Query 009501
Match_columns 533
No_of_seqs 259 out of 1812
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 13:53:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4628 Predicted E3 ubiquitin 99.5 9.2E-15 2E-19 151.8 5.7 74 447-531 206-280 (348)
2 PF13639 zf-RING_2: Ring finge 99.5 1.5E-14 3.3E-19 107.7 1.9 44 482-525 1-44 (44)
3 PF12678 zf-rbx1: RING-H2 zinc 99.2 7.5E-12 1.6E-16 103.5 3.9 47 479-525 17-73 (73)
4 COG5540 RING-finger-containing 99.2 8.6E-12 1.9E-16 126.1 3.2 52 480-531 322-374 (374)
5 PHA02929 N1R/p28-like protein; 99.1 3.5E-11 7.6E-16 120.2 4.7 52 478-529 171-227 (238)
6 COG5243 HRD1 HRD ubiquitin lig 99.1 2.4E-11 5.3E-16 125.6 3.6 55 478-532 284-348 (491)
7 KOG0317 Predicted E3 ubiquitin 99.1 5E-11 1.1E-15 120.3 4.1 53 477-532 235-287 (293)
8 KOG0823 Predicted E3 ubiquitin 99.0 1.3E-10 2.8E-15 114.3 3.4 51 478-531 44-97 (230)
9 PLN03208 E3 ubiquitin-protein 99.0 3.6E-10 7.7E-15 109.3 5.4 50 478-530 15-80 (193)
10 cd00162 RING RING-finger (Real 98.9 1.3E-09 2.7E-14 79.0 3.7 44 483-528 1-45 (45)
11 PF13920 zf-C3HC4_3: Zinc fing 98.9 1E-09 2.2E-14 84.0 2.6 47 480-529 1-48 (50)
12 KOG0320 Predicted E3 ubiquitin 98.9 1.5E-09 3.2E-14 103.1 4.1 52 478-530 128-179 (187)
13 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.3E-09 2.8E-14 79.3 2.6 39 484-524 1-39 (39)
14 PF12861 zf-Apc11: Anaphase-pr 98.9 2E-09 4.4E-14 91.4 4.1 53 480-532 20-85 (85)
15 PHA02926 zinc finger-like prot 98.8 2.8E-09 6.1E-14 104.5 3.8 52 478-529 167-230 (242)
16 KOG0802 E3 ubiquitin ligase [P 98.8 2.3E-09 5E-14 118.9 2.4 52 478-529 288-341 (543)
17 PF14634 zf-RING_5: zinc-RING 98.7 1.2E-08 2.7E-13 76.2 3.8 44 483-526 1-44 (44)
18 smart00504 Ubox Modified RING 98.7 1.9E-08 4E-13 79.6 4.2 45 482-529 2-46 (63)
19 PF15227 zf-C3HC4_4: zinc fing 98.6 1.5E-08 3.3E-13 75.3 2.5 38 484-524 1-42 (42)
20 smart00184 RING Ring finger. E 98.6 4.3E-08 9.2E-13 68.5 3.9 38 484-524 1-39 (39)
21 PF00097 zf-C3HC4: Zinc finger 98.6 2.1E-08 4.5E-13 73.2 2.4 39 484-524 1-41 (41)
22 TIGR00599 rad18 DNA repair pro 98.5 4.5E-08 9.9E-13 104.4 4.0 49 479-530 24-72 (397)
23 COG5194 APC11 Component of SCF 98.5 1.1E-07 2.4E-12 79.4 3.7 50 481-530 20-82 (88)
24 COG5574 PEX10 RING-finger-cont 98.5 8.4E-08 1.8E-12 96.2 2.9 51 479-532 213-265 (271)
25 KOG0828 Predicted E3 ubiquitin 98.3 2.1E-07 4.6E-12 99.7 3.0 53 478-530 568-635 (636)
26 KOG1734 Predicted RING-contain 98.3 2.5E-07 5.3E-12 93.0 1.4 54 476-529 219-281 (328)
27 COG5219 Uncharacterized conser 98.2 3.8E-07 8.2E-12 103.4 1.8 53 478-530 1466-1524(1525)
28 smart00744 RINGv The RING-vari 98.2 1.1E-06 2.5E-11 67.5 3.9 42 483-525 1-49 (49)
29 KOG1493 Anaphase-promoting com 98.2 3.5E-07 7.5E-12 75.9 1.0 53 479-531 18-83 (84)
30 KOG2164 Predicted E3 ubiquitin 98.2 7.8E-07 1.7E-11 96.2 2.9 47 481-530 186-237 (513)
31 KOG2177 Predicted E3 ubiquitin 98.1 1E-06 2.3E-11 85.9 2.0 46 478-526 10-55 (386)
32 PF04564 U-box: U-box domain; 98.1 1.1E-06 2.4E-11 72.6 1.6 48 480-530 3-51 (73)
33 PF11793 FANCL_C: FANCL C-term 98.0 6.1E-07 1.3E-11 73.8 -1.1 49 481-529 2-66 (70)
34 KOG0287 Postreplication repair 98.0 1.8E-06 3.8E-11 89.3 1.8 48 480-530 22-69 (442)
35 PF13445 zf-RING_UBOX: RING-ty 98.0 3.8E-06 8.3E-11 62.9 2.7 38 484-522 1-43 (43)
36 KOG2930 SCF ubiquitin ligase, 98.0 4.2E-06 9.1E-11 73.2 2.7 52 478-529 43-108 (114)
37 COG5432 RAD18 RING-finger-cont 97.9 5.1E-06 1.1E-10 84.4 2.6 46 481-529 25-70 (391)
38 KOG4265 Predicted E3 ubiquitin 97.8 1E-05 2.3E-10 84.5 2.8 49 479-530 288-337 (349)
39 KOG0311 Predicted E3 ubiquitin 97.8 4E-06 8.8E-11 87.2 -1.2 50 479-531 41-92 (381)
40 KOG1039 Predicted E3 ubiquitin 97.8 1.2E-05 2.6E-10 84.7 2.2 50 479-528 159-220 (344)
41 KOG0825 PHD Zn-finger protein 97.7 6.9E-06 1.5E-10 92.1 -0.5 51 479-529 121-171 (1134)
42 KOG4445 Uncharacterized conser 97.6 3.3E-05 7.1E-10 79.0 3.0 55 477-531 111-188 (368)
43 KOG0804 Cytoplasmic Zn-finger 97.4 7E-05 1.5E-09 80.2 2.8 50 478-529 172-222 (493)
44 PF14835 zf-RING_6: zf-RING of 97.4 3.6E-05 7.7E-10 62.3 0.1 46 481-530 7-52 (65)
45 KOG1428 Inhibitor of type V ad 97.2 0.00019 4.1E-09 84.6 3.1 53 477-529 3482-3544(3738)
46 KOG4172 Predicted E3 ubiquitin 97.2 0.00013 2.8E-09 57.2 0.7 46 481-529 7-54 (62)
47 COG5152 Uncharacterized conser 97.0 0.00035 7.6E-09 68.0 2.2 45 481-528 196-240 (259)
48 KOG0978 E3 ubiquitin ligase in 97.0 0.00026 5.7E-09 80.2 1.0 47 480-529 642-689 (698)
49 KOG4159 Predicted E3 ubiquitin 96.9 0.00053 1.2E-08 73.7 2.6 49 479-530 82-130 (398)
50 PF11789 zf-Nse: Zinc-finger o 96.9 0.0005 1.1E-08 54.6 1.6 44 478-523 8-53 (57)
51 KOG0297 TNF receptor-associate 96.8 0.00066 1.4E-08 73.0 3.0 51 478-530 18-68 (391)
52 KOG1941 Acetylcholine receptor 96.8 0.00048 1E-08 72.8 1.4 49 478-526 362-413 (518)
53 KOG1785 Tyrosine kinase negati 96.8 0.00051 1.1E-08 72.7 1.2 51 478-531 366-418 (563)
54 KOG4275 Predicted E3 ubiquitin 96.6 0.00049 1.1E-08 70.4 -0.3 44 479-529 298-342 (350)
55 KOG2879 Predicted E3 ubiquitin 96.5 0.0023 5E-08 65.2 4.0 52 476-529 234-287 (298)
56 PF05883 Baculo_RING: Baculovi 96.4 0.0016 3.5E-08 60.1 1.7 36 481-516 26-67 (134)
57 KOG3970 Predicted E3 ubiquitin 96.3 0.004 8.7E-08 61.8 3.9 53 478-531 47-107 (299)
58 KOG1002 Nucleotide excision re 96.3 0.0021 4.5E-08 70.3 2.1 52 476-530 531-587 (791)
59 KOG3039 Uncharacterized conser 96.2 0.0036 7.8E-08 62.9 3.5 52 480-531 220-272 (303)
60 PF12906 RINGv: RING-variant d 96.1 0.0022 4.9E-08 48.8 1.0 40 484-524 1-47 (47)
61 PHA03096 p28-like protein; Pro 96.0 0.0035 7.6E-08 64.8 2.2 44 482-525 179-230 (284)
62 PHA02825 LAP/PHD finger-like p 96.0 0.0066 1.4E-07 57.5 3.8 48 478-529 5-59 (162)
63 KOG4692 Predicted E3 ubiquitin 96.0 0.0045 9.7E-08 65.0 2.7 49 478-529 419-467 (489)
64 KOG1813 Predicted E3 ubiquitin 95.9 0.0034 7.5E-08 64.5 1.4 45 481-528 241-285 (313)
65 KOG2660 Locus-specific chromos 95.9 0.0021 4.5E-08 67.0 -0.1 48 479-528 13-60 (331)
66 KOG0801 Predicted E3 ubiquitin 95.8 0.0026 5.6E-08 60.3 0.0 31 478-508 174-204 (205)
67 PHA02862 5L protein; Provision 95.7 0.0071 1.5E-07 56.4 2.8 47 481-529 2-53 (156)
68 KOG0827 Predicted E3 ubiquitin 95.7 0.00067 1.4E-08 71.7 -4.5 51 479-529 194-245 (465)
69 COG5236 Uncharacterized conser 95.6 0.0089 1.9E-07 62.7 3.2 51 475-528 55-107 (493)
70 KOG1952 Transcription factor N 95.6 0.032 6.9E-07 64.3 7.9 49 479-527 189-245 (950)
71 KOG1814 Predicted E3 ubiquitin 95.3 0.0099 2.1E-07 63.6 2.6 47 480-526 183-237 (445)
72 PF04641 Rtf2: Rtf2 RING-finge 95.2 0.021 4.5E-07 58.3 4.2 52 478-530 110-162 (260)
73 PF14570 zf-RING_4: RING/Ubox 95.1 0.016 3.5E-07 44.6 2.4 44 484-528 1-47 (48)
74 PF10367 Vps39_2: Vacuolar sor 95.1 0.009 2E-07 51.6 1.1 34 478-512 75-108 (109)
75 KOG1571 Predicted E3 ubiquitin 95.0 0.011 2.5E-07 62.3 1.8 45 478-528 302-346 (355)
76 COG5175 MOT2 Transcriptional r 94.7 0.026 5.7E-07 59.1 3.4 52 478-529 11-64 (480)
77 COG5222 Uncharacterized conser 94.6 0.021 4.6E-07 58.9 2.4 42 482-526 275-318 (427)
78 KOG2114 Vacuolar assembly/sort 94.4 0.024 5.2E-07 65.3 2.6 44 480-528 839-882 (933)
79 KOG3268 Predicted E3 ubiquitin 93.8 0.041 8.9E-07 53.1 2.6 53 478-530 162-229 (234)
80 KOG1001 Helicase-like transcri 93.5 0.025 5.4E-07 64.9 0.6 44 482-529 455-500 (674)
81 KOG3053 Uncharacterized conser 93.3 0.037 7.9E-07 56.2 1.3 52 477-528 16-81 (293)
82 KOG2034 Vacuolar sorting prote 93.3 0.051 1.1E-06 63.1 2.6 37 478-515 814-850 (911)
83 PF10272 Tmpp129: Putative tra 93.1 0.049 1.1E-06 58.1 2.0 27 502-528 311-350 (358)
84 PF14447 Prok-RING_4: Prokaryo 93.0 0.043 9.3E-07 43.4 1.0 48 480-532 6-53 (55)
85 KOG0298 DEAD box-containing he 92.5 0.037 8E-07 66.3 0.1 46 479-526 1151-1196(1394)
86 KOG1609 Protein involved in mR 92.4 0.082 1.8E-06 54.1 2.5 51 479-529 76-134 (323)
87 KOG1940 Zn-finger protein [Gen 92.2 0.075 1.6E-06 54.8 1.9 45 482-526 159-204 (276)
88 PF08746 zf-RING-like: RING-li 92.1 0.07 1.5E-06 40.0 1.1 41 484-524 1-43 (43)
89 COG5183 SSM4 Protein involved 92.1 0.11 2.5E-06 59.7 3.3 54 477-531 8-68 (1175)
90 KOG0826 Predicted E3 ubiquitin 91.7 0.16 3.4E-06 53.4 3.5 50 477-528 296-345 (357)
91 PF03854 zf-P11: P-11 zinc fin 90.8 0.084 1.8E-06 40.6 0.4 33 498-530 14-47 (50)
92 KOG2932 E3 ubiquitin ligase in 90.5 0.08 1.7E-06 55.0 0.1 44 482-529 91-134 (389)
93 PF07800 DUF1644: Protein of u 89.6 0.36 7.9E-06 45.9 3.7 37 480-516 1-47 (162)
94 PF14446 Prok-RING_1: Prokaryo 89.4 0.52 1.1E-05 37.3 3.8 44 480-527 4-50 (54)
95 KOG3002 Zn finger protein [Gen 89.4 0.22 4.7E-06 52.1 2.2 45 478-529 45-91 (299)
96 KOG0802 E3 ubiquitin ligase [P 87.2 0.29 6.2E-06 55.0 1.6 48 478-532 476-523 (543)
97 KOG1812 Predicted E3 ubiquitin 86.7 0.31 6.8E-06 52.6 1.5 40 479-518 144-184 (384)
98 KOG0825 PHD Zn-finger protein 86.7 0.44 9.5E-06 55.0 2.6 50 478-527 93-152 (1134)
99 KOG0309 Conserved WD40 repeat- 86.4 0.35 7.6E-06 55.5 1.7 28 496-523 1042-1069(1081)
100 COG5220 TFB3 Cdk activating ki 86.0 0.41 8.9E-06 48.4 1.8 47 480-526 9-61 (314)
101 PF05290 Baculo_IE-1: Baculovi 84.7 0.88 1.9E-05 42.3 3.1 50 480-532 79-135 (140)
102 KOG4362 Transcriptional regula 84.3 0.3 6.5E-06 55.9 -0.1 47 479-528 19-68 (684)
103 KOG1100 Predicted E3 ubiquitin 82.9 0.54 1.2E-05 46.7 1.0 40 483-529 160-200 (207)
104 KOG3899 Uncharacterized conser 81.2 0.96 2.1E-05 47.0 2.1 28 502-529 325-365 (381)
105 KOG2817 Predicted E3 ubiquitin 76.5 2 4.4E-05 46.3 3.0 47 481-527 334-383 (394)
106 KOG1829 Uncharacterized conser 75.1 1.2 2.5E-05 50.5 0.8 42 480-524 510-556 (580)
107 KOG1815 Predicted E3 ubiquitin 73.3 2.4 5.2E-05 46.5 2.7 39 478-518 67-105 (444)
108 KOG3005 GIY-YIG type nuclease 69.9 2.4 5.3E-05 43.6 1.6 49 480-528 181-242 (276)
109 smart00249 PHD PHD zinc finger 69.1 3.2 7E-05 29.6 1.7 32 483-514 1-32 (47)
110 KOG3579 Predicted E3 ubiquitin 69.0 2.5 5.4E-05 43.9 1.4 40 479-518 266-306 (352)
111 KOG4718 Non-SMC (structural ma 68.8 2.5 5.4E-05 42.2 1.3 43 481-525 181-223 (235)
112 KOG0824 Predicted E3 ubiquitin 67.5 1.7 3.7E-05 45.4 -0.1 52 476-529 100-151 (324)
113 PF02891 zf-MIZ: MIZ/SP-RING z 66.6 5.4 0.00012 30.8 2.5 43 482-527 3-50 (50)
114 KOG3842 Adaptor protein Pellin 66.5 4.9 0.00011 42.3 3.0 53 477-529 337-414 (429)
115 KOG2066 Vacuolar assembly/sort 66.5 2.6 5.5E-05 49.1 1.0 45 480-525 783-831 (846)
116 PF10235 Cript: Microtubule-as 63.3 4.2 9.1E-05 35.5 1.5 39 481-531 44-82 (90)
117 KOG0269 WD40 repeat-containing 61.1 5.8 0.00013 46.1 2.5 42 481-523 779-820 (839)
118 KOG2068 MOT2 transcription fac 60.8 6.6 0.00014 41.6 2.7 49 481-529 249-298 (327)
119 KOG3039 Uncharacterized conser 60.3 5.6 0.00012 40.7 2.0 38 477-517 39-76 (303)
120 PF13901 DUF4206: Domain of un 59.3 6.5 0.00014 38.8 2.3 42 480-526 151-197 (202)
121 KOG3161 Predicted E3 ubiquitin 57.0 4.1 8.9E-05 46.5 0.5 44 480-526 10-54 (861)
122 PF06906 DUF1272: Protein of u 51.5 21 0.00046 28.6 3.5 46 482-530 6-53 (57)
123 PF00628 PHD: PHD-finger; Int 49.6 5.7 0.00012 29.9 0.1 44 483-526 1-50 (51)
124 KOG3113 Uncharacterized conser 47.6 19 0.00041 37.1 3.4 50 479-530 109-159 (293)
125 KOG2807 RNA polymerase II tran 44.9 16 0.00034 38.9 2.4 47 480-526 329-375 (378)
126 smart00132 LIM Zinc-binding do 43.3 17 0.00037 24.9 1.7 38 483-529 1-38 (39)
127 KOG1512 PHD Zn-finger protein 43.1 7.6 0.00016 40.5 -0.1 55 478-532 255-328 (381)
128 KOG4430 Topoisomerase I-bindin 41.9 13 0.00029 41.9 1.5 53 478-530 257-310 (553)
129 PF04710 Pellino: Pellino; In 41.5 8.7 0.00019 41.7 0.0 50 480-529 327-401 (416)
130 smart00064 FYVE Protein presen 41.5 7.8 0.00017 31.0 -0.3 39 479-517 8-47 (68)
131 PLN02189 cellulose synthase 40.1 27 0.00058 42.4 3.7 51 479-529 32-87 (1040)
132 PF04710 Pellino: Pellino; In 39.6 9.8 0.00021 41.3 0.0 30 495-527 302-337 (416)
133 COG5109 Uncharacterized conser 39.4 19 0.00042 38.1 2.1 45 481-525 336-383 (396)
134 PF06844 DUF1244: Protein of u 38.8 18 0.00039 29.9 1.4 13 505-517 11-23 (68)
135 KOG2169 Zn-finger transcriptio 37.9 35 0.00077 39.5 4.1 43 481-530 306-357 (636)
136 KOG1812 Predicted E3 ubiquitin 37.9 17 0.00037 39.4 1.6 44 481-524 306-351 (384)
137 PLN02436 cellulose synthase A 37.3 30 0.00066 42.1 3.5 51 479-529 34-89 (1094)
138 PF14569 zf-UDP: Zinc-binding 37.1 36 0.00078 29.0 3.0 52 478-529 6-62 (80)
139 KOG1729 FYVE finger containing 35.9 7.7 0.00017 40.6 -1.5 40 479-518 212-251 (288)
140 PF05605 zf-Di19: Drought indu 34.0 26 0.00056 27.0 1.6 37 481-527 2-40 (54)
141 TIGR00622 ssl1 transcription f 32.2 48 0.001 30.1 3.2 46 481-526 55-111 (112)
142 cd00350 rubredoxin_like Rubred 30.3 36 0.00078 23.9 1.7 9 518-526 17-25 (33)
143 PF14169 YdjO: Cold-inducible 29.9 26 0.00057 28.3 1.0 13 518-530 39-51 (59)
144 PLN02915 cellulose synthase A 29.9 52 0.0011 40.1 3.9 52 478-529 12-68 (1044)
145 KOG2113 Predicted RNA binding 29.8 40 0.00087 35.8 2.6 44 480-528 342-386 (394)
146 KOG2071 mRNA cleavage and poly 29.8 27 0.00058 39.8 1.4 37 479-515 511-557 (579)
147 KOG4185 Predicted E3 ubiquitin 29.2 10 0.00022 39.0 -1.9 47 480-526 206-264 (296)
148 PF07975 C1_4: TFIIH C1-like d 29.1 33 0.00071 26.9 1.4 42 484-525 2-50 (51)
149 PLN02638 cellulose synthase A 29.1 54 0.0012 40.1 3.8 51 479-529 15-70 (1079)
150 PF04423 Rad50_zn_hook: Rad50 28.7 17 0.00037 28.1 -0.2 21 510-530 8-32 (54)
151 KOG1245 Chromatin remodeling c 27.7 23 0.0005 44.5 0.5 50 478-527 1105-1158(1404)
152 PF01363 FYVE: FYVE zinc finge 27.6 17 0.00037 29.1 -0.4 38 479-516 7-45 (69)
153 KOG3799 Rab3 effector RIM1 and 26.8 18 0.0004 33.8 -0.4 50 478-527 62-116 (169)
154 PF13832 zf-HC5HC2H_2: PHD-zin 26.6 53 0.0012 28.6 2.5 33 480-514 54-88 (110)
155 KOG2979 Protein involved in DN 25.9 38 0.00082 34.9 1.6 43 481-525 176-220 (262)
156 PRK11827 hypothetical protein; 25.2 24 0.00051 28.6 -0.0 19 512-530 2-20 (60)
157 PF10497 zf-4CXXC_R1: Zinc-fin 25.1 70 0.0015 28.5 2.9 24 503-526 37-69 (105)
158 PF07191 zinc-ribbons_6: zinc- 24.8 5.5 0.00012 33.2 -3.8 39 482-528 2-40 (70)
159 PLN02400 cellulose synthase 24.6 58 0.0013 39.9 3.0 51 479-529 34-89 (1085)
160 cd00065 FYVE FYVE domain; Zinc 24.3 51 0.0011 25.2 1.7 35 482-516 3-38 (57)
161 KOG4218 Nuclear hormone recept 24.0 31 0.00068 37.0 0.6 48 478-526 12-75 (475)
162 PF04216 FdhE: Protein involve 23.9 10 0.00022 39.2 -3.0 48 480-527 171-220 (290)
163 COG3813 Uncharacterized protei 23.4 77 0.0017 26.8 2.6 45 483-530 7-53 (84)
164 PF13717 zinc_ribbon_4: zinc-r 23.1 36 0.00077 24.5 0.6 25 483-507 4-36 (36)
165 COG5574 PEX10 RING-finger-cont 22.0 85 0.0018 32.6 3.2 41 476-516 90-132 (271)
166 KOG4577 Transcription factor L 21.1 26 0.00056 36.7 -0.7 41 481-530 92-132 (383)
167 PF00412 LIM: LIM domain; Int 20.8 37 0.00079 25.8 0.3 13 482-494 27-39 (58)
168 KOG3476 Microtubule-associated 20.7 18 0.0004 31.4 -1.5 41 480-532 53-93 (100)
169 PF00357 Integrin_alpha: Integ 20.6 22 0.00048 21.2 -0.8 9 144-152 3-11 (15)
170 KOG4021 Mitochondrial ribosoma 20.6 47 0.001 33.0 1.0 21 508-528 97-118 (239)
171 COG3492 Uncharacterized protei 20.4 58 0.0012 28.7 1.4 13 505-517 42-54 (104)
No 1
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=9.2e-15 Score=151.84 Aligned_cols=74 Identities=28% Similarity=0.807 Sum_probs=56.7
Q ss_pred CCCHHHHHHhhcceeeecccccccccCCcCCCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC-CCCcccc
Q 009501 447 GLSEEIVARQLKTRVYLSATNYINLEEPASKDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK-NVCPICK 525 (533)
Q Consensus 447 glSee~I~~~L~~~~~~ss~~~~~~ee~~~~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k-~sCPvCR 525 (533)
.+.+..+ +.++..+|+.. .+ ....+.|+||||+|+++|++++|||+|.||..||+.||... ..||+||
T Consensus 206 r~~k~~l-~~~p~~~f~~~---------~~-~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK 274 (348)
T KOG4628|consen 206 RLIKRLL-KKLPVRTFTKG---------DD-EDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCK 274 (348)
T ss_pred hhHHHHH-hhCCcEEeccc---------cc-cCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCC
Confidence 3444444 44666666543 11 12226999999999999999999999999999999999986 5599999
Q ss_pred cCcCCC
Q 009501 526 SEALAT 531 (533)
Q Consensus 526 ~~l~~~ 531 (533)
+.+..+
T Consensus 275 ~di~~~ 280 (348)
T KOG4628|consen 275 RDIRTD 280 (348)
T ss_pred CcCCCC
Confidence 987653
No 2
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.47 E-value=1.5e-14 Score=107.74 Aligned_cols=44 Identities=43% Similarity=1.117 Sum_probs=40.7
Q ss_pred CcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccc
Q 009501 482 GSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICK 525 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR 525 (533)
++|+||+++|..++.++.|+|+|.||.+||++||+.+.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999999999999999999999999999999999999997
No 3
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.22 E-value=7.5e-12 Score=103.55 Aligned_cols=47 Identities=34% Similarity=0.818 Sum_probs=37.5
Q ss_pred CCCCcccccccccCCC----------CceEEeCCCChhhHHHHHHHHhcCCCCcccc
Q 009501 479 QEPGSCIICQEDYRDN----------EKIGTLDCDHEYHAECLKKWLFIKNVCPICK 525 (533)
Q Consensus 479 eee~~C~ICLEey~~~----------e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR 525 (533)
..++.|+||++.|.+. -.+...+|+|.||..||.+||+.+.+||+||
T Consensus 17 ~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 17 IADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3456699999999432 2345558999999999999999999999998
No 4
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=8.6e-12 Score=126.14 Aligned_cols=52 Identities=33% Similarity=0.951 Sum_probs=47.9
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHh-cCCCCcccccCcCCC
Q 009501 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF-IKNVCPICKSEALAT 531 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~-~k~sCPvCR~~l~~~ 531 (533)
..-+|+|||++|...+++++|||.|.||..||++||. -++.||+||++++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPPp 374 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPPP 374 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCCC
Confidence 3478999999999999999999999999999999999 589999999998864
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.13 E-value=3.5e-11 Score=120.19 Aligned_cols=52 Identities=33% Similarity=0.821 Sum_probs=42.9
Q ss_pred CCCCCcccccccccCCCCc----eEE-eCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009501 478 DQEPGSCIICQEDYRDNEK----IGT-LDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~----v~~-LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
...+.+|+||++.+.+++. +.+ ++|+|.||.+||.+|++.+.+||+||.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 3456899999999876531 234 479999999999999999999999998764
No 6
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.4e-11 Score=125.61 Aligned_cols=55 Identities=29% Similarity=0.794 Sum_probs=45.2
Q ss_pred CCCCCcccccccc-cCCCC---------ceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCCCC
Q 009501 478 DQEPGSCIICQED-YRDNE---------KIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALATK 532 (533)
Q Consensus 478 ~eee~~C~ICLEe-y~~~e---------~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~~e 532 (533)
..++..|+||+|+ +..+. +-..|||||++|..|+|.|++++.+||+||.++..++
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~ 348 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQ 348 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccccc
Confidence 4567789999999 44331 2357899999999999999999999999999966554
No 7
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=5e-11 Score=120.30 Aligned_cols=53 Identities=23% Similarity=0.630 Sum_probs=46.8
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCCCC
Q 009501 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALATK 532 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~~e 532 (533)
..+....|+||||.-... ..+||||+||+.||.+|+..+..||+||.+..+.|
T Consensus 235 i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 356678999999988776 78899999999999999999999999999887654
No 8
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.3e-10 Score=114.28 Aligned_cols=51 Identities=31% Similarity=0.612 Sum_probs=43.1
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc---CCCCcccccCcCCC
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI---KNVCPICKSEALAT 531 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~---k~sCPvCR~~l~~~ 531 (533)
+....+|-||||.-++. +++.|||.||+.||++||.. ++.||+||..+..+
T Consensus 44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccccc
Confidence 56678999999987766 66779999999999999997 55799999987654
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.00 E-value=3.6e-10 Score=109.28 Aligned_cols=50 Identities=30% Similarity=0.698 Sum_probs=41.6
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc----------------CCCCcccccCcCC
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI----------------KNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~----------------k~sCPvCR~~l~~ 530 (533)
..++.+|+||++.+++. ++++|||.||+.||.+|+.. +..||+||+++..
T Consensus 15 ~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 15 SGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 44568899999998766 66799999999999999853 3479999998754
No 10
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.90 E-value=1.3e-09 Score=79.03 Aligned_cols=44 Identities=41% Similarity=1.040 Sum_probs=37.0
Q ss_pred cccccccccCCCCceEEeCCCChhhHHHHHHHHhc-CCCCcccccCc
Q 009501 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI-KNVCPICKSEA 528 (533)
Q Consensus 483 ~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~-k~sCPvCR~~l 528 (533)
.|+||++.+. +.+..++|+|.||..||++|++. ...||+||+.+
T Consensus 1 ~C~iC~~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhh--CceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999983 33555579999999999999998 77899999764
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.87 E-value=1e-09 Score=83.99 Aligned_cols=47 Identities=38% Similarity=0.764 Sum_probs=39.4
Q ss_pred CCCcccccccccCCCCceEEeCCCCh-hhHHHHHHHHhcCCCCcccccCcC
Q 009501 480 EPGSCIICQEDYRDNEKIGTLDCDHE-YHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~-FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
++..|.||++...+ +..+||||. ||..|+.+|++.+..||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 35689999998654 577899999 999999999999999999999874
No 12
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.5e-09 Score=103.09 Aligned_cols=52 Identities=23% Similarity=0.569 Sum_probs=44.1
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
.+....|+|||+.+.+... ..++|||+||..||+.-|+....||+|++++..
T Consensus 128 ~~~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred cccccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 3455889999999987633 457999999999999999999999999987754
No 13
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.86 E-value=1.3e-09 Score=79.30 Aligned_cols=39 Identities=36% Similarity=0.959 Sum_probs=34.0
Q ss_pred ccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCccc
Q 009501 484 CIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPIC 524 (533)
Q Consensus 484 C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvC 524 (533)
|+||++++.+ .++.++|||.||.+||.+|++.+..||+|
T Consensus 1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 8999999887 46778999999999999999999999998
No 14
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.86 E-value=2e-09 Score=91.36 Aligned_cols=53 Identities=26% Similarity=0.698 Sum_probs=41.9
Q ss_pred CCCcccccccccCC--------CC--ceEEeCCCChhhHHHHHHHHhc---CCCCcccccCcCCCC
Q 009501 480 EPGSCIICQEDYRD--------NE--KIGTLDCDHEYHAECLKKWLFI---KNVCPICKSEALATK 532 (533)
Q Consensus 480 ee~~C~ICLEey~~--------~e--~v~~LpCgH~FH~~CI~qWL~~---k~sCPvCR~~l~~~e 532 (533)
+++.|.||...|+. ++ .++.-.|+|.||..||.+||.. +..||+||++....|
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k~ 85 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFKE 85 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeCC
Confidence 47899999998872 11 2444479999999999999996 568999999876654
No 15
>PHA02926 zinc finger-like protein; Provisional
Probab=98.81 E-value=2.8e-09 Score=104.54 Aligned_cols=52 Identities=27% Similarity=0.673 Sum_probs=40.3
Q ss_pred CCCCCcccccccccCCC-----CceEEe-CCCChhhHHHHHHHHhcC------CCCcccccCcC
Q 009501 478 DQEPGSCIICQEDYRDN-----EKIGTL-DCDHEYHAECLKKWLFIK------NVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~-----e~v~~L-pCgH~FH~~CI~qWL~~k------~sCPvCR~~l~ 529 (533)
..++++|+||+|..-++ ..-++| +|+|.||..||++|.+.+ .+||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 45678999999986432 123455 799999999999999863 45999998764
No 16
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.3e-09 Score=118.92 Aligned_cols=52 Identities=29% Similarity=0.768 Sum_probs=45.4
Q ss_pred CCCCCcccccccccCCCCc--eEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009501 478 DQEPGSCIICQEDYRDNEK--IGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~--v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
...++.|+||+|++..+.. ..+|+|+|+||..||++||+++.+||+||..+.
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 3457899999999998755 567899999999999999999999999998543
No 17
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.71 E-value=1.2e-08 Score=76.19 Aligned_cols=44 Identities=34% Similarity=0.753 Sum_probs=38.8
Q ss_pred cccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCccccc
Q 009501 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKS 526 (533)
Q Consensus 483 ~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~ 526 (533)
.|.||++.|.+.....+|+|||+||..||+++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999999966666778899999999999999966788999985
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.68 E-value=1.9e-08 Score=79.60 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=40.8
Q ss_pred CcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009501 482 GSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
..|+||++.++++ .+++|||+|+..||.+|++.+..||+|+.++.
T Consensus 2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 5799999999886 66799999999999999999899999998874
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.64 E-value=1.5e-08 Score=75.28 Aligned_cols=38 Identities=32% Similarity=0.798 Sum_probs=30.5
Q ss_pred ccccccccCCCCceEEeCCCChhhHHHHHHHHhcC----CCCccc
Q 009501 484 CIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK----NVCPIC 524 (533)
Q Consensus 484 C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k----~sCPvC 524 (533)
|+||++.|+++ +.|+|||.|+..||.+|++.. ..||+|
T Consensus 1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999988 789999999999999999873 369998
No 20
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.61 E-value=4.3e-08 Score=68.49 Aligned_cols=38 Identities=42% Similarity=1.042 Sum_probs=32.8
Q ss_pred ccccccccCCCCceEEeCCCChhhHHHHHHHHh-cCCCCccc
Q 009501 484 CIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF-IKNVCPIC 524 (533)
Q Consensus 484 C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~-~k~sCPvC 524 (533)
|+||++.. .....++|+|.||..||++|++ .+..||+|
T Consensus 1 C~iC~~~~---~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL---KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC---CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 88999983 3457889999999999999999 56789998
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.60 E-value=2.1e-08 Score=73.19 Aligned_cols=39 Identities=41% Similarity=1.025 Sum_probs=34.2
Q ss_pred ccccccccCCCCceEEeCCCChhhHHHHHHHHh--cCCCCccc
Q 009501 484 CIICQEDYRDNEKIGTLDCDHEYHAECLKKWLF--IKNVCPIC 524 (533)
Q Consensus 484 C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~--~k~sCPvC 524 (533)
|+||++.+.+. +..++|+|.||.+||++|++ ....||+|
T Consensus 1 C~iC~~~~~~~--~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDP--VILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSE--EEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCC--CEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999998876 35789999999999999999 46679998
No 22
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.55 E-value=4.5e-08 Score=104.41 Aligned_cols=49 Identities=22% Similarity=0.623 Sum_probs=43.0
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009501 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
+....|+||++.|... ++++|+|.||..||..|+.....||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 4567999999999876 468999999999999999998899999987754
No 23
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.48 E-value=1.1e-07 Score=79.37 Aligned_cols=50 Identities=26% Similarity=0.668 Sum_probs=37.4
Q ss_pred CCcccccccccC-----------CCCc--eEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009501 481 PGSCIICQEDYR-----------DNEK--IGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 481 e~~C~ICLEey~-----------~~e~--v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
-+.|+||...|. .+++ +..-.|.|.||..||.+||.+++.||+||++...
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 366777665442 3333 2333799999999999999999999999987643
No 24
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=8.4e-08 Score=96.21 Aligned_cols=51 Identities=25% Similarity=0.622 Sum_probs=44.2
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHH-HHhcCCC-CcccccCcCCCC
Q 009501 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKK-WLFIKNV-CPICKSEALATK 532 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~q-WL~~k~s-CPvCR~~l~~~e 532 (533)
+.+.+|+||++..... ..++|||+||+.||-. |-+++.. ||+||+...+.+
T Consensus 213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 5678999999987765 7889999999999999 9988876 999999887643
No 25
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=2.1e-07 Score=99.72 Aligned_cols=53 Identities=25% Similarity=0.673 Sum_probs=41.8
Q ss_pred CCCCCcccccccccCCCC---c-----------eEEeCCCChhhHHHHHHHHh-cCCCCcccccCcCC
Q 009501 478 DQEPGSCIICQEDYRDNE---K-----------IGTLDCDHEYHAECLKKWLF-IKNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e---~-----------v~~LpCgH~FH~~CI~qWL~-~k~sCPvCR~~l~~ 530 (533)
......|+||+.++.--. . ...+||.|+||..|+++|+. .|..||+||.++++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 455678999998775211 1 23559999999999999999 57799999998865
No 26
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.5e-07 Score=93.00 Aligned_cols=54 Identities=26% Similarity=0.725 Sum_probs=44.2
Q ss_pred CCCCCCCcccccccccCCCC-------ceEEeCCCChhhHHHHHHHHhc--CCCCcccccCcC
Q 009501 476 SKDQEPGSCIICQEDYRDNE-------KIGTLDCDHEYHAECLKKWLFI--KNVCPICKSEAL 529 (533)
Q Consensus 476 ~~~eee~~C~ICLEey~~~e-------~v~~LpCgH~FH~~CI~qWL~~--k~sCPvCR~~l~ 529 (533)
.+..++..|+||-..+...+ ++-.|.|+|.||..||+-|... |.+||.||..+.
T Consensus 219 tkhl~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 219 TKHLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CCCCCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence 34567789999998886554 5668899999999999999764 779999998763
No 27
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.23 E-value=3.8e-07 Score=103.44 Aligned_cols=53 Identities=26% Similarity=0.639 Sum_probs=41.5
Q ss_pred CCCCCcccccccccCCCC----ceEEeCCCChhhHHHHHHHHhc--CCCCcccccCcCC
Q 009501 478 DQEPGSCIICQEDYRDNE----KIGTLDCDHEYHAECLKKWLFI--KNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e----~v~~LpCgH~FH~~CI~qWL~~--k~sCPvCR~~l~~ 530 (533)
-+.-++|+||+..+..-+ ..++-.|.|.||..||++|++. +++||+||.++..
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 456789999998876221 1234469999999999999997 5689999988764
No 28
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.23 E-value=1.1e-06 Score=67.46 Aligned_cols=42 Identities=33% Similarity=0.819 Sum_probs=32.7
Q ss_pred cccccccccCCCCceEEeCCC-----ChhhHHHHHHHHhc--CCCCcccc
Q 009501 483 SCIICQEDYRDNEKIGTLDCD-----HEYHAECLKKWLFI--KNVCPICK 525 (533)
Q Consensus 483 ~C~ICLEey~~~e~v~~LpCg-----H~FH~~CI~qWL~~--k~sCPvCR 525 (533)
.|.||++. .+++...++||. |.+|..||++|+.. +.+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 49999993 334444567885 89999999999976 45899995
No 29
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.5e-07 Score=75.89 Aligned_cols=53 Identities=26% Similarity=0.686 Sum_probs=39.2
Q ss_pred CCCCcccccccccCC--------CCceE-Ee-CCCChhhHHHHHHHHhc---CCCCcccccCcCCC
Q 009501 479 QEPGSCIICQEDYRD--------NEKIG-TL-DCDHEYHAECLKKWLFI---KNVCPICKSEALAT 531 (533)
Q Consensus 479 eee~~C~ICLEey~~--------~e~v~-~L-pCgH~FH~~CI~qWL~~---k~sCPvCR~~l~~~ 531 (533)
..++.|.||.-.|.. +|..- ++ .|.|.||..||.+||.. +..||+||++....
T Consensus 18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~~ 83 (84)
T KOG1493|consen 18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQFK 83 (84)
T ss_pred CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEec
Confidence 344599999988862 22211 22 69999999999999987 44699999987554
No 30
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=7.8e-07 Score=96.25 Aligned_cols=47 Identities=26% Similarity=0.550 Sum_probs=38.9
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC-----CCCcccccCcCC
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK-----NVCPICKSEALA 530 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k-----~sCPvCR~~l~~ 530 (533)
+..|+|||+..... ..+.|||+||..||-+.+... ..||+||..+..
T Consensus 186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 67999999987765 455699999999999998763 479999987754
No 31
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1e-06 Score=85.89 Aligned_cols=46 Identities=33% Similarity=0.671 Sum_probs=41.3
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCccccc
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKS 526 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~ 526 (533)
.+++..|.||++.|... .+|+|+|.||..||..|+.....||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 46778999999999998 77899999999999999996678999993
No 32
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.11 E-value=1.1e-06 Score=72.61 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=38.3
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc-CCCCcccccCcCC
Q 009501 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI-KNVCPICKSEALA 530 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~-k~sCPvCR~~l~~ 530 (533)
++..|+||.+-+.++ ++++|||.|.+.||.+||+. ..+||+|+..+..
T Consensus 3 ~~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 356899999999987 77899999999999999999 8899999887654
No 33
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=98.04 E-value=6.1e-07 Score=73.83 Aligned_cols=49 Identities=31% Similarity=0.680 Sum_probs=23.9
Q ss_pred CCcccccccccCCCCce---EEe--CCCChhhHHHHHHHHhc--CC---------CCcccccCcC
Q 009501 481 PGSCIICQEDYRDNEKI---GTL--DCDHEYHAECLKKWLFI--KN---------VCPICKSEAL 529 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v---~~L--pCgH~FH~~CI~qWL~~--k~---------sCPvCR~~l~ 529 (533)
+.+|.||++.+.+.+.+ +.- .|+..||..||.+||+. +. .||.|++++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 46899999987633322 222 59999999999999974 11 5999999874
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.03 E-value=1.8e-06 Score=89.27 Aligned_cols=48 Identities=27% Similarity=0.564 Sum_probs=42.8
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009501 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
.-..|.||.|-|..+ .++||+|.||.-||+..|..+..||.|+.++.+
T Consensus 22 ~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 346899999999987 677999999999999999999999999987654
No 35
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.01 E-value=3.8e-06 Score=62.95 Aligned_cols=38 Identities=34% Similarity=0.734 Sum_probs=22.6
Q ss_pred ccccccccCCCC-ceEEeCCCChhhHHHHHHHHhcC----CCCc
Q 009501 484 CIICQEDYRDNE-KIGTLDCDHEYHAECLKKWLFIK----NVCP 522 (533)
Q Consensus 484 C~ICLEey~~~e-~v~~LpCgH~FH~~CI~qWL~~k----~sCP 522 (533)
|+||.| |...+ .-.+|+|||+|+.+||++|++.. ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 76643 44678999999999999999953 3576
No 36
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=4.2e-06 Score=73.24 Aligned_cols=52 Identities=31% Similarity=0.738 Sum_probs=38.3
Q ss_pred CCCCCccccccccc-------------CCCCceEEe-CCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009501 478 DQEPGSCIICQEDY-------------RDNEKIGTL-DCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey-------------~~~e~v~~L-pCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
+..-+.|+||..-+ ..++.++.- -|.|.||..||.+||++++.||+|.++-.
T Consensus 43 Di~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 43 DIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred eeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 45667888886533 122323333 79999999999999999999999987643
No 37
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.92 E-value=5.1e-06 Score=84.44 Aligned_cols=46 Identities=22% Similarity=0.592 Sum_probs=41.1
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
-..|-||-+-|... ..++|||.||.-||+..|..+..||+||.+..
T Consensus 25 ~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~ 70 (391)
T COG5432 25 MLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDPC 70 (391)
T ss_pred HHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccHH
Confidence 46899999999876 56799999999999999999999999998643
No 38
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=1e-05 Score=84.45 Aligned_cols=49 Identities=31% Similarity=0.680 Sum_probs=41.9
Q ss_pred CCCCcccccccccCCCCceEEeCCCC-hhhHHHHHHHHhcCCCCcccccCcCC
Q 009501 479 QEPGSCIICQEDYRDNEKIGTLDCDH-EYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH-~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
+...+|.|||.+-++ +.+|||.| --|.+|.+...-..+.||+||+++..
T Consensus 288 ~~gkeCVIClse~rd---t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRD---TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcc---eEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 457899999998776 47899999 56999999988789999999998743
No 39
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=4e-06 Score=87.21 Aligned_cols=50 Identities=26% Similarity=0.547 Sum_probs=41.2
Q ss_pred CCCCcccccccccCCCCceEEe-CCCChhhHHHHHHHHhc-CCCCcccccCcCCC
Q 009501 479 QEPGSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWLFI-KNVCPICKSEALAT 531 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL~~-k~sCPvCR~~l~~~ 531 (533)
..+..|.|||+-++.. +.+ .|.|.||.+||.+-|+. .++||.||+.+...
T Consensus 41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 3457899999998764 333 59999999999999986 77999999987654
No 40
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.2e-05 Score=84.65 Aligned_cols=50 Identities=28% Similarity=0.853 Sum_probs=39.4
Q ss_pred CCCCcccccccccCCCC----ceEEe-CCCChhhHHHHHHHHh--c-----CCCCcccccCc
Q 009501 479 QEPGSCIICQEDYRDNE----KIGTL-DCDHEYHAECLKKWLF--I-----KNVCPICKSEA 528 (533)
Q Consensus 479 eee~~C~ICLEey~~~e----~v~~L-pCgH~FH~~CI~qWL~--~-----k~sCPvCR~~l 528 (533)
..+.+|.||+|...+.. ..++| +|.|.||..||++|-. + .+.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 56789999999887654 12344 6999999999999983 3 46899999764
No 41
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.70 E-value=6.9e-06 Score=92.14 Aligned_cols=51 Identities=20% Similarity=0.432 Sum_probs=45.4
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009501 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
.....|+|||..+.++......+|+|.||..||..|-+...+||+||.++.
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 445789999999998877777799999999999999999999999998764
No 42
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=97.61 E-value=3.3e-05 Score=78.99 Aligned_cols=55 Identities=27% Similarity=0.729 Sum_probs=45.5
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc-----------------------CCCCcccccCcCCC
Q 009501 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI-----------------------KNVCPICKSEALAT 531 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~-----------------------k~sCPvCR~~l~~~ 531 (533)
.......|+|||-.|.+++...++.|-|.||..|+.+.|.. +..||+||..+..+
T Consensus 111 nn~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 111 NNHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 34567799999999999999999999999999999877621 23699999887653
No 43
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.45 E-value=7e-05 Score=80.22 Aligned_cols=50 Identities=32% Similarity=0.775 Sum_probs=39.0
Q ss_pred CCCCCcccccccccCCCCc-eEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009501 478 DQEPGSCIICQEDYRDNEK-IGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~-v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
..+-..|+||||.....-. +..+.|.|.||..|+.+|- ..+||+||-...
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhhcC
Confidence 4566789999999876532 3445799999999999994 568999996544
No 44
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.41 E-value=3.6e-05 Score=62.33 Aligned_cols=46 Identities=22% Similarity=0.627 Sum_probs=24.1
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
-..|.+|.+.++++ +....|.|.||..||.+-+. ..||+|+.++-.
T Consensus 7 lLrCs~C~~~l~~p--v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~ 52 (65)
T PF14835_consen 7 LLRCSICFDILKEP--VCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWI 52 (65)
T ss_dssp TTS-SSS-S--SS---B---SSS--B-TTTGGGGTT--TB-SSS--B-S-
T ss_pred hcCCcHHHHHhcCC--ceeccCccHHHHHHhHHhcC--CCCCCcCChHHH
Confidence 45899999998876 44458999999999988554 459999998754
No 45
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=97.22 E-value=0.00019 Score=84.64 Aligned_cols=53 Identities=30% Similarity=0.649 Sum_probs=43.7
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC----------CCCcccccCcC
Q 009501 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK----------NVCPICKSEAL 529 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k----------~sCPvCR~~l~ 529 (533)
....++.|.||..+--.....+.|.|+|+||..|.+.-|+++ -+||+|+.++.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 345678999999887777778899999999999999877753 17999998763
No 46
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00013 Score=57.21 Aligned_cols=46 Identities=26% Similarity=0.556 Sum_probs=34.9
Q ss_pred CCcccccccccCCCCceEEeCCCC-hhhHHHHHHHHh-cCCCCcccccCcC
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCDH-EYHAECLKKWLF-IKNVCPICKSEAL 529 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH-~FH~~CI~qWL~-~k~sCPvCR~~l~ 529 (533)
.++|.||+|.-.+. +.-.||| -.|.+|-.+.++ .+..||+||+++.
T Consensus 7 ~dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 7 SDECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 48999999875443 2337999 569999766555 6889999998764
No 47
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.00 E-value=0.00035 Score=67.98 Aligned_cols=45 Identities=24% Similarity=0.608 Sum_probs=40.0
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCc
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEA 528 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l 528 (533)
...|.||-++|+.+ +++.|||.||..|.-+-++....|-+|.+..
T Consensus 196 PF~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t 240 (259)
T COG5152 196 PFLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKAT 240 (259)
T ss_pred ceeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence 35899999999987 6788999999999999888899999998754
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.00026 Score=80.18 Aligned_cols=47 Identities=23% Similarity=0.595 Sum_probs=39.5
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc-CCCCcccccCcC
Q 009501 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI-KNVCPICKSEAL 529 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~-k~sCPvCR~~l~ 529 (533)
+-..|+.|-..+++. ++++|+|.||..||+.-+.. ...||.|.+.+-
T Consensus 642 ~~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFG 689 (698)
T ss_pred hceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 456899999877764 67799999999999999986 678999987654
No 49
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00053 Score=73.71 Aligned_cols=49 Identities=24% Similarity=0.615 Sum_probs=43.2
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009501 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
..+..|.||+.-+... +.++|||.||..||.+-|..+..||+||.++..
T Consensus 82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCccccccccc
Confidence 5678999999988876 677999999999999988888999999998764
No 50
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.86 E-value=0.0005 Score=54.60 Aligned_cols=44 Identities=18% Similarity=0.519 Sum_probs=30.3
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc--CCCCcc
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI--KNVCPI 523 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~--k~sCPv 523 (533)
......|+|.+..|+++ +....|+|+|-++.|.+||+. +..||+
T Consensus 8 ~~~~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred cEeccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 34567899999998865 677799999999999999954 457999
No 51
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.85 E-value=0.00066 Score=73.03 Aligned_cols=51 Identities=33% Similarity=0.626 Sum_probs=43.5
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
..++..|+||...+.+. +..+.|||.||..||.+|+..+..||.|+..+..
T Consensus 18 ~~~~l~C~~C~~vl~~p--~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~ 68 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDP--VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQ 68 (391)
T ss_pred CcccccCccccccccCC--CCCCCCCCcccccccchhhccCcCCcccccccch
Confidence 45678999999999887 2226899999999999999999999999887654
No 52
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.80 E-value=0.00048 Score=72.84 Aligned_cols=49 Identities=29% Similarity=0.674 Sum_probs=40.7
Q ss_pred CCCCCcccccccccCCC-CceEEeCCCChhhHHHHHHHHhcC--CCCccccc
Q 009501 478 DQEPGSCIICQEDYRDN-EKIGTLDCDHEYHAECLKKWLFIK--NVCPICKS 526 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~-e~v~~LpCgH~FH~~CI~qWL~~k--~sCPvCR~ 526 (533)
.+-+.-|..|-|.|..+ +.+..|||.|+||..|+.+.|+.+ .+||-||+
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 34567899999998765 457788999999999999999874 47999994
No 53
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.76 E-value=0.00051 Score=72.74 Aligned_cols=51 Identities=27% Similarity=0.614 Sum_probs=40.4
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc--CCCCcccccCcCCC
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI--KNVCPICKSEALAT 531 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~--k~sCPvCR~~l~~~ 531 (533)
...-+.|-||-|.= ..|.+-||||..|..|+..|-.. ...||.||.++.-.
T Consensus 366 gsTFeLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 366 GSTFELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred cchHHHHHHhhccC---CCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 34556899999853 33566799999999999999854 57899999988643
No 54
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.00049 Score=70.41 Aligned_cols=44 Identities=34% Similarity=0.707 Sum_probs=34.1
Q ss_pred CCCCcccccccccCCCCceEEeCCCC-hhhHHHHHHHHhcCCCCcccccCcC
Q 009501 479 QEPGSCIICQEDYRDNEKIGTLDCDH-EYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH-~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
.....|.||++.-.+ ...|.||| +-|.+|-+. -+.|||||+.+.
T Consensus 298 ~~~~LC~ICmDaP~D---CvfLeCGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 298 ATRRLCAICMDAPRD---CVFLECGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred hHHHHHHHHhcCCcc---eEEeecCcEEeehhhccc----cccCchHHHHHH
Confidence 346789999987555 47889999 459999755 349999998764
No 55
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0023 Score=65.18 Aligned_cols=52 Identities=21% Similarity=0.394 Sum_probs=41.9
Q ss_pred CCCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc--CCCCcccccCcC
Q 009501 476 SKDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI--KNVCPICKSEAL 529 (533)
Q Consensus 476 ~~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~--k~sCPvCR~~l~ 529 (533)
.....+.+|++|-+.-..+ -...+|+|+||.-||..=+.. ..+||.|..++.
T Consensus 234 s~~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4456778999999986655 455689999999999987775 468999998776
No 56
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=96.37 E-value=0.0016 Score=60.09 Aligned_cols=36 Identities=22% Similarity=0.508 Sum_probs=30.0
Q ss_pred CCcccccccccCCCCceEEeCCC------ChhhHHHHHHHHh
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCD------HEYHAECLKKWLF 516 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCg------H~FH~~CI~qWL~ 516 (533)
.-+|.||++.+.+.+-++.++|+ |.||.+|+++|-+
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~ 67 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR 67 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence 56899999999985556777776 8999999999943
No 57
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.004 Score=61.83 Aligned_cols=53 Identities=23% Similarity=0.535 Sum_probs=43.4
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc--------CCCCcccccCcCCC
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI--------KNVCPICKSEALAT 531 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~--------k~sCPvCR~~l~~~ 531 (533)
..-...|..|--.+..+|.+ .|-|-|.||++|+.+|-.. .-.||.|..+++++
T Consensus 47 sDY~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp 107 (299)
T KOG3970|consen 47 SDYNPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP 107 (299)
T ss_pred cCCCCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence 34456899999999888765 5779999999999999765 22699999999875
No 58
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.26 E-value=0.0021 Score=70.32 Aligned_cols=52 Identities=19% Similarity=0.548 Sum_probs=40.8
Q ss_pred CCCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc-----CCCCcccccCcCC
Q 009501 476 SKDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI-----KNVCPICKSEALA 530 (533)
Q Consensus 476 ~~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~-----k~sCPvCR~~l~~ 530 (533)
.+...+.+|.+|-+.-++. +...|.|.||+-||+++... +.+||+|-..+.-
T Consensus 531 ~enk~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 531 DENKGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred ccccCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 3456778999999875543 67789999999999999864 4589999776543
No 59
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0036 Score=62.92 Aligned_cols=52 Identities=15% Similarity=0.260 Sum_probs=46.7
Q ss_pred CCCcccccccccCCCCceEEe-CCCChhhHHHHHHHHhcCCCCcccccCcCCC
Q 009501 480 EPGSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWLFIKNVCPICKSEALAT 531 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL~~k~sCPvCR~~l~~~ 531 (533)
.-..|+||.+.+...-....| +|||+|+.+|+++.+.....||+|..++.+.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 456899999999998888888 8999999999999999999999999887653
No 60
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=96.11 E-value=0.0022 Score=48.85 Aligned_cols=40 Identities=33% Similarity=0.754 Sum_probs=27.7
Q ss_pred ccccccccCCCCceEEeCCC--C---hhhHHHHHHHHhc--CCCCccc
Q 009501 484 CIICQEDYRDNEKIGTLDCD--H---EYHAECLKKWLFI--KNVCPIC 524 (533)
Q Consensus 484 C~ICLEey~~~e~v~~LpCg--H---~FH~~CI~qWL~~--k~sCPvC 524 (533)
|-||+++-.+.+ ..+.||. = ..|..||++|+.. +..|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 789999877765 2345654 3 6799999999985 4679988
No 61
>PHA03096 p28-like protein; Provisional
Probab=96.01 E-value=0.0035 Score=64.80 Aligned_cols=44 Identities=30% Similarity=0.595 Sum_probs=32.6
Q ss_pred CcccccccccCCCC----ceEEe-CCCChhhHHHHHHHHhc---CCCCcccc
Q 009501 482 GSCIICQEDYRDNE----KIGTL-DCDHEYHAECLKKWLFI---KNVCPICK 525 (533)
Q Consensus 482 ~~C~ICLEey~~~e----~v~~L-pCgH~FH~~CI~qWL~~---k~sCPvCR 525 (533)
..|.||+|...... .-+.| .|.|.||..||+.|... +..||.||
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~ 230 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR 230 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence 68999999876542 33566 59999999999999876 33444444
No 62
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=96.00 E-value=0.0066 Score=57.50 Aligned_cols=48 Identities=29% Similarity=0.701 Sum_probs=35.8
Q ss_pred CCCCCcccccccccCCCCceEEeCCC--C---hhhHHHHHHHHhc--CCCCcccccCcC
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCD--H---EYHAECLKKWLFI--KNVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCg--H---~FH~~CI~qWL~~--k~sCPvCR~~l~ 529 (533)
...+..|-||.++..+ . .-||. . .-|.+|+++|+.. ...|++|+++..
T Consensus 5 s~~~~~CRIC~~~~~~--~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDEYDV--V--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCCeeEecCCCCCC--c--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 4567899999988542 2 23554 4 5599999999987 457999998653
No 63
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0045 Score=64.96 Aligned_cols=49 Identities=24% Similarity=0.485 Sum_probs=41.2
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
+.++..|+||.-.--. .+..||+|.-|.+||.+-|...+.|=.||+.+.
T Consensus 419 ~sEd~lCpICyA~pi~---Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPIN---AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred CcccccCcceecccch---hhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 5678899999865333 256699999999999999999999999998765
No 64
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.0034 Score=64.51 Aligned_cols=45 Identities=22% Similarity=0.524 Sum_probs=40.5
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCc
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEA 528 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l 528 (533)
...|-||.+.|..+ +++.|+|.||..|..+=++....|.+|-+.+
T Consensus 241 Pf~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 241 PFKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred Cccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccc
Confidence 46799999999988 7889999999999999999899999998754
No 65
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=95.87 E-value=0.0021 Score=66.98 Aligned_cols=48 Identities=23% Similarity=0.529 Sum_probs=39.8
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCc
Q 009501 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEA 528 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l 528 (533)
..-..|.+|-.-|-+. ..+.-|-|.||..||.+.|...+.||.|...+
T Consensus 13 n~~itC~LC~GYliDA--TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~i 60 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDA--TTITECLHTFCKSCIVKYLEESKYCPTCDIVI 60 (331)
T ss_pred ccceehhhccceeecc--hhHHHHHHHHHHHHHHHHHHHhccCCccceec
Confidence 3456899999888765 23346999999999999999999999998755
No 66
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.0026 Score=60.29 Aligned_cols=31 Identities=35% Similarity=0.805 Sum_probs=27.9
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhH
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHA 508 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~ 508 (533)
..+..+|.||||+++.++.|..|||-.+||+
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 3456789999999999999999999999995
No 67
>PHA02862 5L protein; Provisional
Probab=95.75 E-value=0.0071 Score=56.44 Aligned_cols=47 Identities=23% Similarity=0.624 Sum_probs=33.6
Q ss_pred CCcccccccccCCCCceEEeCC---CChhhHHHHHHHHhc--CCCCcccccCcC
Q 009501 481 PGSCIICQEDYRDNEKIGTLDC---DHEYHAECLKKWLFI--KNVCPICKSEAL 529 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpC---gH~FH~~CI~qWL~~--k~sCPvCR~~l~ 529 (533)
.+.|-||.++-++. +.--.| --.-|.+|+.+|+.. +..|++||.+..
T Consensus 2 ~diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 36899999985433 211123 147799999999985 568999998753
No 68
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.00067 Score=71.73 Aligned_cols=51 Identities=39% Similarity=0.676 Sum_probs=45.4
Q ss_pred CCCCcccccccccCCC-CceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009501 479 QEPGSCIICQEDYRDN-EKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~-e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
.-...|+||.+.|+.. +++..+-|||.+|.+||.+||..+..||.|+.++.
T Consensus 194 slv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~ 245 (465)
T KOG0827|consen 194 SLVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP 245 (465)
T ss_pred HHHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence 3457899999999987 77778889999999999999999999999998875
No 69
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.61 E-value=0.0089 Score=62.65 Aligned_cols=51 Identities=24% Similarity=0.638 Sum_probs=40.6
Q ss_pred cCCCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHH--hcCCCCcccccCc
Q 009501 475 ASKDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWL--FIKNVCPICKSEA 528 (533)
Q Consensus 475 ~~~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL--~~k~sCPvCR~~l 528 (533)
.+.++++..|.||-+.+.- +..+||+|..|--|..+.- -.++.||+||++-
T Consensus 55 ddtDEen~~C~ICA~~~TY---s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 55 DDTDEENMNCQICAGSTTY---SARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccccccceeEEecCCceE---EEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3457888899999987654 4678999999999987653 3588999999853
No 70
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=95.61 E-value=0.032 Score=64.32 Aligned_cols=49 Identities=31% Similarity=0.770 Sum_probs=38.7
Q ss_pred CCCCcccccccccCCCCceEEe-CCCChhhHHHHHHHHhcC--C-----CCcccccC
Q 009501 479 QEPGSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWLFIK--N-----VCPICKSE 527 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL~~k--~-----sCPvCR~~ 527 (533)
....+|.||++.++....+-.- .|-|+||..||++|-+.. . .||-|...
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 4557899999999877666544 589999999999998751 1 59999843
No 71
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.0099 Score=63.61 Aligned_cols=47 Identities=30% Similarity=0.523 Sum_probs=38.6
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc--------CCCCccccc
Q 009501 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI--------KNVCPICKS 526 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~--------k~sCPvCR~ 526 (533)
.-..|.||+++..-......|||+|+||..|++..+.. .-.||-|+-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 34689999999887788888999999999999999865 236887653
No 72
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.16 E-value=0.021 Score=58.25 Aligned_cols=52 Identities=17% Similarity=0.399 Sum_probs=41.6
Q ss_pred CCCCCcccccccccCCCCceEEe-CCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
......|+|+..++......+.| +|||+|...||++- .....||+|-.++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTE 162 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCcccc
Confidence 45567899999999766566666 99999999999997 335679999887653
No 73
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.10 E-value=0.016 Score=44.62 Aligned_cols=44 Identities=23% Similarity=0.594 Sum_probs=22.8
Q ss_pred ccccccccCCCCceEEe--CCCChhhHHHHHHHHh-cCCCCcccccCc
Q 009501 484 CIICQEDYRDNEKIGTL--DCDHEYHAECLKKWLF-IKNVCPICKSEA 528 (533)
Q Consensus 484 C~ICLEey~~~e~v~~L--pCgH~FH~~CI~qWL~-~k~sCPvCR~~l 528 (533)
|++|.+++...+. ..+ +|+...|+.|..+-++ ....||-||++.
T Consensus 1 cp~C~e~~d~~d~-~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDK-DFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCT-T--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCC-ccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7899999954433 233 6899999999999887 477899999863
No 74
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.06 E-value=0.009 Score=51.64 Aligned_cols=34 Identities=24% Similarity=0.567 Sum_probs=27.9
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHH
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLK 512 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~ 512 (533)
-.++..|.||-..+.. ....+.||||+||..|++
T Consensus 75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence 3456789999999987 455667999999999986
No 75
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.011 Score=62.26 Aligned_cols=45 Identities=20% Similarity=0.566 Sum_probs=32.7
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCc
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEA 528 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l 528 (533)
....+.|.||+++.++ ...+||||.-| |+.--.. -.+||+||+.+
T Consensus 302 ~~~p~lcVVcl~e~~~---~~fvpcGh~cc--ct~cs~~-l~~CPvCR~rI 346 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKS---AVFVPCGHVCC--CTLCSKH-LPQCPVCRQRI 346 (355)
T ss_pred cCCCCceEEecCCccc---eeeecCCcEEE--chHHHhh-CCCCchhHHHH
Confidence 4456789999998776 47789999865 6544322 33499999865
No 76
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=94.69 E-value=0.026 Score=59.12 Aligned_cols=52 Identities=19% Similarity=0.347 Sum_probs=36.9
Q ss_pred CCCCCcccccccccCCCCceEE-eCCCChhhHHHHHHHHhc-CCCCcccccCcC
Q 009501 478 DQEPGSCIICQEDYRDNEKIGT-LDCDHEYHAECLKKWLFI-KNVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~-LpCgH~FH~~CI~qWL~~-k~sCPvCR~~l~ 529 (533)
..+++.|+.|+|++...++-.. .+||-..|.-|...--+. +..||.||+...
T Consensus 11 edeed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 11 EDEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 3455669999999887665443 479987777776554332 668999997543
No 77
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.57 E-value=0.021 Score=58.91 Aligned_cols=42 Identities=26% Similarity=0.565 Sum_probs=34.5
Q ss_pred CcccccccccCCCCceEEe-CCCChhhHHHHHHHHhc-CCCCccccc
Q 009501 482 GSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWLFI-KNVCPICKS 526 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL~~-k~sCPvCR~ 526 (533)
..|+.|-.-+... ..+ -|+|.||.+||..-|.. ...||.|.+
T Consensus 275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 7899999888776 334 59999999999988775 668999954
No 78
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.40 E-value=0.024 Score=65.33 Aligned_cols=44 Identities=27% Similarity=0.642 Sum_probs=35.2
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCc
Q 009501 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEA 528 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l 528 (533)
....|.+|--.++-+ .+-..|||.||..|+. .....||-|+.++
T Consensus 839 q~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred eeeeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 346899999888765 5566899999999998 4467899998743
No 79
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.041 Score=53.11 Aligned_cols=53 Identities=30% Similarity=0.688 Sum_probs=36.8
Q ss_pred CCCCCcccccccccCCCCc----eEEeCCCChhhHHHHHHHHhc----C-------CCCcccccCcCC
Q 009501 478 DQEPGSCIICQEDYRDNEK----IGTLDCDHEYHAECLKKWLFI----K-------NVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~----v~~LpCgH~FH~~CI~qWL~~----k-------~sCPvCR~~l~~ 530 (533)
+++...|.||+.---++.. .--..||--||.-|+..||+. + ..||.|..++.-
T Consensus 162 dd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 162 DDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred chhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 4556689999853333321 122379999999999999974 1 269999887743
No 80
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.50 E-value=0.025 Score=64.95 Aligned_cols=44 Identities=30% Similarity=0.669 Sum_probs=36.5
Q ss_pred CcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC--CCCcccccCcC
Q 009501 482 GSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK--NVCPICKSEAL 529 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k--~sCPvCR~~l~ 529 (533)
..|.||++ .+....+.|+|.||.+|+.+-+... ..||+||..+.
T Consensus 455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 79999999 4456788999999999999988863 35999997654
No 81
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.31 E-value=0.037 Score=56.16 Aligned_cols=52 Identities=29% Similarity=0.641 Sum_probs=37.4
Q ss_pred CCCCCCcccccccccCCCCceEEe-CCC-----ChhhHHHHHHHHhcCC--------CCcccccCc
Q 009501 477 KDQEPGSCIICQEDYRDNEKIGTL-DCD-----HEYHAECLKKWLFIKN--------VCPICKSEA 528 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~L-pCg-----H~FH~~CI~qWL~~k~--------sCPvCR~~l 528 (533)
+.+.+..|=||+..=++...-... ||. |..|..||..|+..|. +||-|+++.
T Consensus 16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 356678899999875544222122 653 7999999999997654 599999864
No 82
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=0.051 Score=63.05 Aligned_cols=37 Identities=22% Similarity=0.473 Sum_probs=29.7
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHH
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWL 515 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL 515 (533)
-+..+.|.||.-.+-.. +-.+.+|||.||++||.+-.
T Consensus 814 ~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred ecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence 46678999999887654 44566999999999998764
No 83
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.11 E-value=0.049 Score=58.11 Aligned_cols=27 Identities=33% Similarity=0.914 Sum_probs=21.6
Q ss_pred CCChhhHHHHHHHHhc-------------CCCCcccccCc
Q 009501 502 CDHEYHAECLKKWLFI-------------KNVCPICKSEA 528 (533)
Q Consensus 502 CgH~FH~~CI~qWL~~-------------k~sCPvCR~~l 528 (533)
|.-.+|.+|+-+|+.. +-.||.||+++
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~F 350 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKF 350 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccc
Confidence 5567899999999864 33799999975
No 84
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=92.99 E-value=0.043 Score=43.37 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=35.2
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCCCC
Q 009501 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALATK 532 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~~e 532 (533)
.+..|..|...-.. -.+++|+|..+..|..- ++-+-||+|.+++...+
T Consensus 6 ~~~~~~~~~~~~~~---~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTK---GTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccc---cccccccceeeccccCh--hhccCCCCCCCcccCCC
Confidence 34567777765333 36789999999999764 45678999999887653
No 85
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.50 E-value=0.037 Score=66.31 Aligned_cols=46 Identities=37% Similarity=0.779 Sum_probs=39.3
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCccccc
Q 009501 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKS 526 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~ 526 (533)
.+...|.||++.+... ..+..|||.+|..|+..|+..+..||+|+.
T Consensus 1151 ~~~~~c~ic~dil~~~--~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQ--GGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred hcccchHHHHHHHHhc--CCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence 3455899999998843 256789999999999999999999999984
No 86
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=92.37 E-value=0.082 Score=54.10 Aligned_cols=51 Identities=31% Similarity=0.656 Sum_probs=37.3
Q ss_pred CCCCcccccccccCCCCc-eEEeCCC-----ChhhHHHHHHHHhc--CCCCcccccCcC
Q 009501 479 QEPGSCIICQEDYRDNEK-IGTLDCD-----HEYHAECLKKWLFI--KNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~-v~~LpCg-----H~FH~~CI~qWL~~--k~sCPvCR~~l~ 529 (533)
.++..|.||.++...... ....+|. ...|..|+..|+.. +..|.+|.....
T Consensus 76 ~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 76 SSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 345789999998765432 3345665 46799999999995 567999987543
No 87
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=92.23 E-value=0.075 Score=54.79 Aligned_cols=45 Identities=31% Similarity=0.679 Sum_probs=38.5
Q ss_pred CcccccccccCCCC-ceEEeCCCChhhHHHHHHHHhcCCCCccccc
Q 009501 482 GSCIICQEDYRDNE-KIGTLDCDHEYHAECLKKWLFIKNVCPICKS 526 (533)
Q Consensus 482 ~~C~ICLEey~~~e-~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~ 526 (533)
..|+||.+.+.... .+..++|||.-|..|+.+.....-.||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34999999887654 4567799999999999999888889999987
No 88
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=92.11 E-value=0.07 Score=40.00 Aligned_cols=41 Identities=29% Similarity=0.799 Sum_probs=23.9
Q ss_pred ccccccccCCCCceEEeCCCChhhHHHHHHHHhcCC--CCccc
Q 009501 484 CIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKN--VCPIC 524 (533)
Q Consensus 484 C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~--sCPvC 524 (533)
|.+|-+....+..-....|+=.+|..|++.+++... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778888877773332235888999999999999754 69988
No 89
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=92.10 E-value=0.11 Score=59.67 Aligned_cols=54 Identities=26% Similarity=0.576 Sum_probs=39.8
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCC-----hhhHHHHHHHHhc--CCCCcccccCcCCC
Q 009501 477 KDQEPGSCIICQEDYRDNEKIGTLDCDH-----EYHAECLKKWLFI--KNVCPICKSEALAT 531 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~LpCgH-----~FH~~CI~qWL~~--k~sCPvCR~~l~~~ 531 (533)
..++...|.||..+=..++++- -||+. ..|.+|+-+|+.- +..|-+|+.+....
T Consensus 8 mN~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk 68 (1175)
T COG5183 8 MNEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFK 68 (1175)
T ss_pred CCccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeee
Confidence 3556689999998766655442 25553 5699999999986 56799999877543
No 90
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=0.16 Score=53.36 Aligned_cols=50 Identities=12% Similarity=0.262 Sum_probs=39.5
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCc
Q 009501 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEA 528 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l 528 (533)
...+...|+||+.....+ .+..--|-+||..||-+.+...+.||+=..++
T Consensus 296 l~~~~~~CpvClk~r~Np--tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 296 LPPDREVCPVCLKKRQNP--TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCCccccChhHHhccCCC--ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 345667899999986665 33335699999999999999999999966554
No 91
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=90.80 E-value=0.084 Score=40.57 Aligned_cols=33 Identities=30% Similarity=0.648 Sum_probs=24.0
Q ss_pred EEeCCC-ChhhHHHHHHHHhcCCCCcccccCcCC
Q 009501 498 GTLDCD-HEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 498 ~~LpCg-H~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
....|. |.-|..|+...|.+...||+|+.++++
T Consensus 14 ~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 14 GLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp SEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred CeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 355786 788999999999999999999998875
No 92
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.54 E-value=0.08 Score=55.04 Aligned_cols=44 Identities=20% Similarity=0.489 Sum_probs=29.7
Q ss_pred CcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009501 482 GSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
-.|.-|---+.. .-+++||+|+||.+|... ...+.||.|-.++.
T Consensus 91 HfCd~Cd~PI~I--YGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAI--YGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCccee--eecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 346666443332 235669999999999754 34678999976654
No 93
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=89.62 E-value=0.36 Score=45.94 Aligned_cols=37 Identities=30% Similarity=0.580 Sum_probs=22.6
Q ss_pred CCCcccccccccCCCCceEEe---------CCCChh-hHHHHHHHHh
Q 009501 480 EPGSCIICQEDYRDNEKIGTL---------DCDHEY-HAECLKKWLF 516 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~L---------pCgH~F-H~~CI~qWL~ 516 (533)
++-.|+||||--.+...+... =|+-.| |..||++.-+
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 356899999976554111111 144433 8999999853
No 94
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=89.43 E-value=0.52 Score=37.28 Aligned_cols=44 Identities=27% Similarity=0.739 Sum_probs=33.7
Q ss_pred CCCcccccccccCCCCceEEe-CCCChhhHHHHHHHHhcCCCCcc--cccC
Q 009501 480 EPGSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWLFIKNVCPI--CKSE 527 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL~~k~sCPv--CR~~ 527 (533)
....|.+|-+.|++++.+++- .|+=.||++|..+ ...|=+ |.+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~~~c~~~ 50 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCINYSCGTG 50 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEeccCCCC
Confidence 456899999999977666665 5999999999755 556655 6544
No 95
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=89.39 E-value=0.22 Score=52.12 Aligned_cols=45 Identities=22% Similarity=0.520 Sum_probs=36.6
Q ss_pred CCCCCcccccccccCCCCceEEeCC--CChhhHHHHHHHHhcCCCCcccccCcC
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDC--DHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpC--gH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
..+-.+|+||.+.+..+ +.+| ||+-|..|-. +..+.||.||.++.
T Consensus 45 ~~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRT---KVSNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCccc----ceecCCCcEehhhhhh---hhcccCCccccccc
Confidence 44567899999999876 6677 7999999975 45788999998875
No 96
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.17 E-value=0.29 Score=55.02 Aligned_cols=48 Identities=31% Similarity=0.869 Sum_probs=39.7
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCCCC
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALATK 532 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~~e 532 (533)
.+..+.|.||+++. ..+..+|. |..|+++|+..+..||+|++.+..++
T Consensus 476 ~~~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~ 523 (543)
T KOG0802|consen 476 REPNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDD 523 (543)
T ss_pred hcccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhccc
Confidence 45678999999987 33566788 99999999999999999988776543
No 97
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.72 E-value=0.31 Score=52.61 Aligned_cols=40 Identities=23% Similarity=0.582 Sum_probs=30.1
Q ss_pred CCCCcccccccccCCC-CceEEeCCCChhhHHHHHHHHhcC
Q 009501 479 QEPGSCIICQEDYRDN-EKIGTLDCDHEYHAECLKKWLFIK 518 (533)
Q Consensus 479 eee~~C~ICLEey~~~-e~v~~LpCgH~FH~~CI~qWL~~k 518 (533)
.....|.||..++... +....+.|+|.||.+|+++-++.+
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~ 184 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVK 184 (384)
T ss_pred cccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhh
Confidence 3467899999444443 444456899999999999988864
No 98
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.68 E-value=0.44 Score=54.95 Aligned_cols=50 Identities=12% Similarity=0.216 Sum_probs=35.6
Q ss_pred CCCCCcccccccccCCC-CceEEeC---CCChhhHHHHHHHHhc------CCCCcccccC
Q 009501 478 DQEPGSCIICQEDYRDN-EKIGTLD---CDHEYHAECLKKWLFI------KNVCPICKSE 527 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~-e~v~~Lp---CgH~FH~~CI~qWL~~------k~sCPvCR~~ 527 (533)
..+.+.|.||.-++... +....++ |+|.||..||..|+.+ +-.|+.|..-
T Consensus 93 ~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~C 152 (1134)
T KOG0825|consen 93 TAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEEC 152 (1134)
T ss_pred cccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHH
Confidence 34556777777777763 2234444 9999999999999864 3368999753
No 99
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=86.36 E-value=0.35 Score=55.49 Aligned_cols=28 Identities=29% Similarity=0.643 Sum_probs=24.7
Q ss_pred ceEEeCCCChhhHHHHHHHHhcCCCCcc
Q 009501 496 KIGTLDCDHEYHAECLKKWLFIKNVCPI 523 (533)
Q Consensus 496 ~v~~LpCgH~FH~~CI~qWL~~k~sCPv 523 (533)
..++..|+|+-|.+|.++|++...+||.
T Consensus 1042 s~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1042 SNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred chhhccccccccHHHHHHHHhcCCcCCC
Confidence 3456689999999999999999999985
No 100
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.02 E-value=0.41 Score=48.37 Aligned_cols=47 Identities=21% Similarity=0.509 Sum_probs=35.2
Q ss_pred CCCcccccccccC-CCCceEEe-C-CCChhhHHHHHHHHhcC-CCCc--cccc
Q 009501 480 EPGSCIICQEDYR-DNEKIGTL-D-CDHEYHAECLKKWLFIK-NVCP--ICKS 526 (533)
Q Consensus 480 ee~~C~ICLEey~-~~e~v~~L-p-CgH~FH~~CI~qWL~~k-~sCP--vCR~ 526 (533)
.+..|+||..+.- .++.+... | |-|..|..|+++-+.+. ..|| -|.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 4568999997654 44433333 6 99999999999999985 5799 7754
No 101
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=84.74 E-value=0.88 Score=42.27 Aligned_cols=50 Identities=24% Similarity=0.523 Sum_probs=38.6
Q ss_pred CCCcccccccccCCCCceEEe-C---CCChhhHHHHHHHHhc---CCCCcccccCcCCCC
Q 009501 480 EPGSCIICQEDYRDNEKIGTL-D---CDHEYHAECLKKWLFI---KNVCPICKSEALATK 532 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~L-p---CgH~FH~~CI~qWL~~---k~sCPvCR~~l~~~e 532 (533)
.-.+|-||.|.-.++ +-| | ||-.-|--|--..++. ...||+||+.+....
T Consensus 79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 567899999987765 344 2 9999999988776665 568999999876643
No 102
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=84.33 E-value=0.3 Score=55.87 Aligned_cols=47 Identities=36% Similarity=0.711 Sum_probs=38.3
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC---CCCcccccCc
Q 009501 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK---NVCPICKSEA 528 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k---~sCPvCR~~l 528 (533)
.-..+|.||++.|.+. ..++|-|.|+..|+-.-|..+ ..||+|+..+
T Consensus 19 ~k~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 19 QKILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhhccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 3456899999999887 677999999999998777654 4799998644
No 103
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.88 E-value=0.54 Score=46.72 Aligned_cols=40 Identities=33% Similarity=0.690 Sum_probs=29.1
Q ss_pred cccccccccCCCCceEEeCCCC-hhhHHHHHHHHhcCCCCcccccCcC
Q 009501 483 SCIICQEDYRDNEKIGTLDCDH-EYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 483 ~C~ICLEey~~~e~v~~LpCgH-~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
.|-+|-+. +-.|..|||.| .+|..|-.. ...||+|+....
T Consensus 160 ~Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 38888764 33466779998 779999644 456999987653
No 104
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.17 E-value=0.96 Score=46.95 Aligned_cols=28 Identities=21% Similarity=0.610 Sum_probs=22.4
Q ss_pred CCChhhHHHHHHHHh-------------cCCCCcccccCcC
Q 009501 502 CDHEYHAECLKKWLF-------------IKNVCPICKSEAL 529 (533)
Q Consensus 502 CgH~FH~~CI~qWL~-------------~k~sCPvCR~~l~ 529 (533)
|.-.+|.+|+-+|+. .+-+||+||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 667899999999874 3558999998753
No 105
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.54 E-value=2 Score=46.28 Aligned_cols=47 Identities=23% Similarity=0.336 Sum_probs=39.7
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC---CCCcccccC
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK---NVCPICKSE 527 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k---~sCPvCR~~ 527 (533)
-..|+|=.+.-.+++.-..|.|||+-..+-|.+..+.. ..||.|=.+
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 35799998888888889999999999999999987753 579999543
No 106
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=75.11 E-value=1.2 Score=50.52 Aligned_cols=42 Identities=24% Similarity=0.672 Sum_probs=27.3
Q ss_pred CCCcccccccc-----cCCCCceEEeCCCChhhHHHHHHHHhcCCCCccc
Q 009501 480 EPGSCIICQED-----YRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPIC 524 (533)
Q Consensus 480 ee~~C~ICLEe-----y~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvC 524 (533)
....|.||... |+......+..|+++||..|++. .+.-||.|
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC 556 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRC 556 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCch
Confidence 44678888431 22223344557999999999754 23449999
No 107
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.34 E-value=2.4 Score=46.53 Aligned_cols=39 Identities=31% Similarity=0.597 Sum_probs=32.9
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK 518 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k 518 (533)
+.....|.||.+.+.. .+..+.|+|.||..|+...|.++
T Consensus 67 ~~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~k 105 (444)
T KOG1815|consen 67 KKGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGTK 105 (444)
T ss_pred CCccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhhe
Confidence 4566789999999876 56677999999999999998763
No 108
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=69.88 E-value=2.4 Score=43.61 Aligned_cols=49 Identities=24% Similarity=0.600 Sum_probs=36.2
Q ss_pred CCCcccccccccCCCCceEEe----CCCChhhHHHHHHHHh-c--------CCCCcccccCc
Q 009501 480 EPGSCIICQEDYRDNEKIGTL----DCDHEYHAECLKKWLF-I--------KNVCPICKSEA 528 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~L----pCgH~FH~~CI~qWL~-~--------k~sCPvCR~~l 528 (533)
...+|-||.+++.+.+..+.+ .|.-++|..|+-.-+. . ...||.|++.+
T Consensus 181 ~~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 181 LNVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred cchhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 346899999999655555444 3999999999998433 2 34799998743
No 109
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.97 E-value=2.5 Score=43.89 Aligned_cols=40 Identities=18% Similarity=0.421 Sum_probs=30.3
Q ss_pred CCCCcccccccccCCCCceEEeC-CCChhhHHHHHHHHhcC
Q 009501 479 QEPGSCIICQEDYRDNEKIGTLD-CDHEYHAECLKKWLFIK 518 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~Lp-CgH~FH~~CI~qWL~~k 518 (533)
.....|.+|.|.+++...|.+-. =.|+||.-|-++-++..
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 34589999999999874433221 26999999999998873
No 111
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=68.84 E-value=2.5 Score=42.18 Aligned_cols=43 Identities=26% Similarity=0.706 Sum_probs=35.6
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccc
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICK 525 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR 525 (533)
-..|.+|-+-.-.+ +++-.|+=.||..|+.+.+.+...||.|.
T Consensus 181 lk~Cn~Ch~LvIqg--~rCg~c~i~~h~~c~qty~q~~~~cphc~ 223 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQG--IRCGSCNIQYHRGCIQTYLQRRDICPHCG 223 (235)
T ss_pred HHHHhHhHHHhhee--eccCcccchhhhHHHHHHhcccCcCCchh
Confidence 35799999876655 34457888999999999999999999994
No 112
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.47 E-value=1.7 Score=45.42 Aligned_cols=52 Identities=25% Similarity=0.506 Sum_probs=40.8
Q ss_pred CCCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009501 476 SKDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 476 ~~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
......+.|-||...|...... --|.|.|+..|.+.|....+.||.||..+.
T Consensus 100 ~~~~~~~~~~~~~g~l~vpt~~--qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 100 GFQQDHDICYICYGKLTVPTRI--QGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred cccCCccceeeeeeeEEecccc--cCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 3356677899999887765221 139999999999999999999999987553
No 113
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=66.57 E-value=5.4 Score=30.78 Aligned_cols=43 Identities=23% Similarity=0.456 Sum_probs=21.1
Q ss_pred CcccccccccCCCCceEEeCCCChhhHHHHHHHHhc---CC--CCcccccC
Q 009501 482 GSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI---KN--VCPICKSE 527 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~---k~--sCPvCR~~ 527 (533)
..|+|....++.+ ++...|.|.-|.+ ++.||.. +. .||+|+++
T Consensus 3 L~CPls~~~i~~P--~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIP--VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSE--EEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeC--ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 4688888877654 5666899975433 4556554 22 59999863
No 114
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=66.53 E-value=4.9 Score=42.35 Aligned_cols=53 Identities=21% Similarity=0.468 Sum_probs=36.9
Q ss_pred CCCCCCcccccccccC---------------CCCce-EEeCCCChhhHHHHHHHHhc---------CCCCcccccCcC
Q 009501 477 KDQEPGSCIICQEDYR---------------DNEKI-GTLDCDHEYHAECLKKWLFI---------KNVCPICKSEAL 529 (533)
Q Consensus 477 ~~eee~~C~ICLEey~---------------~~e~v-~~LpCgH~FH~~CI~qWL~~---------k~sCPvCR~~l~ 529 (533)
....+.+|++|+..=. .+-.. ...||||.--.+-.+=|-+. +..||.|-+.+.
T Consensus 337 ~g~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 337 TGQRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cCcccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 3556789999997421 11111 23389999999999999876 347999977654
No 115
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.50 E-value=2.6 Score=49.06 Aligned_cols=45 Identities=27% Similarity=0.509 Sum_probs=34.1
Q ss_pred CCCcccccccccCCC----CceEEeCCCChhhHHHHHHHHhcCCCCcccc
Q 009501 480 EPGSCIICQEDYRDN----EKIGTLDCDHEYHAECLKKWLFIKNVCPICK 525 (533)
Q Consensus 480 ee~~C~ICLEey~~~----e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR 525 (533)
.+..|.-|.+..-.. +.++++.|+|.||..|+.--+.+++ |-.|-
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~ 831 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIES 831 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhh
Confidence 355899999876532 4678899999999999987776655 66664
No 116
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=63.32 E-value=4.2 Score=35.46 Aligned_cols=39 Identities=28% Similarity=0.694 Sum_probs=31.5
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCCC
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALAT 531 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~~ 531 (533)
...|.||-..+.. =+|.||..|.++ +..|.+|.+.+...
T Consensus 44 ~~~C~~CK~~v~q--------~g~~YCq~CAYk----kGiCamCGKki~dt 82 (90)
T PF10235_consen 44 SSKCKICKTKVHQ--------PGAKYCQTCAYK----KGICAMCGKKILDT 82 (90)
T ss_pred Ccccccccccccc--------CCCccChhhhcc----cCcccccCCeeccc
Confidence 5689999876554 268899999876 88999999888654
No 117
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=61.13 E-value=5.8 Score=46.09 Aligned_cols=42 Identities=26% Similarity=0.578 Sum_probs=29.9
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcc
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPI 523 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPv 523 (533)
...|++|-..+.. ..+-+--|+|.-|.+|+++|+.....||.
T Consensus 779 ~~~CtVC~~vi~G-~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIRG-VDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceeee-eEeecccccccccHHHHHHHHhcCCCCcc
Confidence 3467788665432 11222259999999999999999887766
No 118
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=60.77 E-value=6.6 Score=41.58 Aligned_cols=49 Identities=27% Similarity=0.381 Sum_probs=37.8
Q ss_pred CCcccccccccCCCCceE-EeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009501 481 PGSCIICQEDYRDNEKIG-TLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~-~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
...|+||.+.....+... -.+|++.-|+.|+..-..-...||.||++..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 478999999875443332 2378898899999888888889999997654
No 119
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.29 E-value=5.6 Score=40.67 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=32.4
Q ss_pred CCCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc
Q 009501 477 KDQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI 517 (533)
Q Consensus 477 ~~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~ 517 (533)
...+.+.|..||..+.++ ++++=||+|+++||.+.+..
T Consensus 39 siK~FdcCsLtLqPc~dP---vit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 39 SIKPFDCCSLTLQPCRDP---VITPDGYLFDREAILEYILA 76 (303)
T ss_pred ccCCcceeeeecccccCC---ccCCCCeeeeHHHHHHHHHH
Confidence 345678999999999887 67789999999999998754
No 120
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=59.27 E-value=6.5 Score=38.77 Aligned_cols=42 Identities=26% Similarity=0.755 Sum_probs=29.0
Q ss_pred CCCcccccccc-----cCCCCceEEeCCCChhhHHHHHHHHhcCCCCccccc
Q 009501 480 EPGSCIICQED-----YRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKS 526 (533)
Q Consensus 480 ee~~C~ICLEe-----y~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~ 526 (533)
....|-||-++ |.....+..-.|+-+||..|.. +..||-|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 45789999863 2232333444799999999976 367999953
No 121
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.01 E-value=4.1 Score=46.50 Aligned_cols=44 Identities=23% Similarity=0.451 Sum_probs=32.2
Q ss_pred CCCcccccccccCCCC-ceEEeCCCChhhHHHHHHHHhcCCCCccccc
Q 009501 480 EPGSCIICQEDYRDNE-KIGTLDCDHEYHAECLKKWLFIKNVCPICKS 526 (533)
Q Consensus 480 ee~~C~ICLEey~~~e-~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~ 526 (533)
+-..|.||+..|.... .-+.|.|||.-|..|+..-. +.+|| |+.
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp-~~~ 54 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP-TKR 54 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC-CCc
Confidence 4468999998887653 23566899999999998743 55677 653
No 122
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=51.51 E-value=21 Score=28.58 Aligned_cols=46 Identities=26% Similarity=0.645 Sum_probs=32.2
Q ss_pred CcccccccccCCCCceEEeCCC--ChhhHHHHHHHHhcCCCCcccccCcCC
Q 009501 482 GSCIICQEDYRDNEKIGTLDCD--HEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~LpCg--H~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
..|-.|-.++.....-. .-|. ..||.+|.+.-| +..||-|.-++..
T Consensus 6 pnCE~C~~dLp~~s~~A-~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEA-YICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcc-eEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 35777777776553111 1243 489999999876 7899999988765
No 123
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=49.56 E-value=5.7 Score=29.86 Aligned_cols=44 Identities=27% Similarity=0.597 Sum_probs=30.6
Q ss_pred cccccccccCCCCceEEeCCCChhhHHHHHHHHhc------CCCCccccc
Q 009501 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI------KNVCPICKS 526 (533)
Q Consensus 483 ~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~------k~sCPvCR~ 526 (533)
.|.||...-..++.|..-.|+-.||..|+..=... .-.||.|+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 38899995444444444479999999998765442 236888864
No 124
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.62 E-value=19 Score=37.06 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=36.0
Q ss_pred CCCCcccccccccCCCCceEEe-CCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009501 479 QEPGSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
.....|+|---++...-....| +|||+|-..-+++. ....|++|.+....
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~ 159 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQE 159 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccc
Confidence 3456799876666655444444 89999999998874 36789999876544
No 125
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=44.90 E-value=16 Score=38.89 Aligned_cols=47 Identities=17% Similarity=0.383 Sum_probs=34.8
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCccccc
Q 009501 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKS 526 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~ 526 (533)
....|-.|.++.......+.-.|.+.||.+|=.--=+.=-.||-|..
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 34459999888888777777789999999995433233346999964
No 126
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=43.28 E-value=17 Score=24.93 Aligned_cols=38 Identities=24% Similarity=0.517 Sum_probs=24.5
Q ss_pred cccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcC
Q 009501 483 SCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEAL 529 (533)
Q Consensus 483 ~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~ 529 (533)
.|..|-+.+...+.... .=+..||.+|+ .|..|+..+.
T Consensus 1 ~C~~C~~~i~~~~~~~~-~~~~~~H~~Cf--------~C~~C~~~L~ 38 (39)
T smart00132 1 KCAGCGKPIRGGELVLR-ALGKVWHPECF--------KCSKCGKPLG 38 (39)
T ss_pred CccccCCcccCCcEEEE-eCCccccccCC--------CCcccCCcCc
Confidence 47788887776533322 23678888775 5788877653
No 127
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=43.14 E-value=7.6 Score=40.46 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=34.6
Q ss_pred CCCCCcccccccccCCC------CceEEeCCCChhhHHHHHH------------HHhc-CCCCcccccCcCCCC
Q 009501 478 DQEPGSCIICQEDYRDN------EKIGTLDCDHEYHAECLKK------------WLFI-KNVCPICKSEALATK 532 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~------e~v~~LpCgH~FH~~CI~q------------WL~~-k~sCPvCR~~l~~~e 532 (533)
......|.||++.-+.. ..+.+-+|.-.+|-.||.- |--. -..|-+|.++..++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E 328 (381)
T KOG1512|consen 255 NQRRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESE 328 (381)
T ss_pred CcchhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchh
Confidence 35567899999864421 2344558999999999863 3221 235777777665543
No 128
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=41.91 E-value=13 Score=41.92 Aligned_cols=53 Identities=17% Similarity=0.350 Sum_probs=45.4
Q ss_pred CCCCCcccccccccCCCCceEEe-CCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
.+....|.+|+......+....+ .|.+.++..|+.+|-.....|+.|++++..
T Consensus 257 q~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~ 310 (553)
T KOG4430|consen 257 QENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRT 310 (553)
T ss_pred hhcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhcccccccc
Confidence 45567899999998888777777 588999999999999999999999987653
No 129
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=41.54 E-value=8.7 Score=41.70 Aligned_cols=50 Identities=22% Similarity=0.486 Sum_probs=0.0
Q ss_pred CCCcccccccccC--------------C-CCc-eEEeCCCChhhHHHHHHHHhc---------CCCCcccccCcC
Q 009501 480 EPGSCIICQEDYR--------------D-NEK-IGTLDCDHEYHAECLKKWLFI---------KNVCPICKSEAL 529 (533)
Q Consensus 480 ee~~C~ICLEey~--------------~-~e~-v~~LpCgH~FH~~CI~qWL~~---------k~sCPvCR~~l~ 529 (533)
...+|++|+..-. + +.. ...-||||.-=.++.+-|-+. +..||.|-..+.
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 3789999997421 1 101 123389999999999999876 247999987664
No 130
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PLN02189 cellulose synthase
Probab=40.15 E-value=27 Score=42.43 Aligned_cols=51 Identities=18% Similarity=0.359 Sum_probs=35.4
Q ss_pred CCCCcccccccccCC---CCceEEe-CCCChhhHHHHHHHHhc-CCCCcccccCcC
Q 009501 479 QEPGSCIICQEDYRD---NEKIGTL-DCDHEYHAECLKKWLFI-KNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~---~e~v~~L-pCgH~FH~~CI~qWL~~-k~sCPvCR~~l~ 529 (533)
.....|.||-+++.. ++.-+.. -|+=-.|+.|.+-=.+. +..||.||+...
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 445689999999763 3333333 48888899999543333 668999998654
No 132
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=39.58 E-value=9.8 Score=41.34 Aligned_cols=30 Identities=23% Similarity=0.578 Sum_probs=0.0
Q ss_pred CceEEeCCCChhhHHHHHHHHhc------CCCCcccccC
Q 009501 495 EKIGTLDCDHEYHAECLKKWLFI------KNVCPICKSE 527 (533)
Q Consensus 495 e~v~~LpCgH~FH~~CI~qWL~~------k~sCPvCR~~ 527 (533)
+.-+-|.|||++- ...|-.. ..+||+||+.
T Consensus 302 qP~VYl~CGHVhG---~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 302 QPWVYLNCGHVHG---YHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ---------------------------------------
T ss_pred Cceeeccccceee---ecccccccccccccccCCCcccc
Confidence 3456789999876 3467543 3479999975
No 133
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=39.40 E-value=19 Score=38.09 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=36.6
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc---CCCCcccc
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI---KNVCPICK 525 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~---k~sCPvCR 525 (533)
-..|++--|.-.+++.-..|.|||+.-.+-+++.-+. ...||.|-
T Consensus 336 ~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 336 LFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 3579988888888888889999999999999886654 34699994
No 134
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=38.75 E-value=18 Score=29.91 Aligned_cols=13 Identities=31% Similarity=0.779 Sum_probs=9.2
Q ss_pred hhhHHHHHHHHhc
Q 009501 505 EYHAECLKKWLFI 517 (533)
Q Consensus 505 ~FH~~CI~qWL~~ 517 (533)
-||+.||.+|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999864
No 135
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=37.92 E-value=35 Score=39.45 Aligned_cols=43 Identities=19% Similarity=0.416 Sum_probs=24.7
Q ss_pred CCcccccccccCCCCceEEeCCCChhhH--HHHHH-HHhc----CC--CCcccccCcCC
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCDHEYHA--ECLKK-WLFI----KN--VCPICKSEALA 530 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~--~CI~q-WL~~----k~--sCPvCR~~l~~ 530 (533)
...|+||.-.. .+||.+..|. .|.+. |+.. +. .||+|.+.+..
T Consensus 306 SL~CPl~~~Rm-------~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~ 357 (636)
T KOG2169|consen 306 SLNCPLSKMRM-------SLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPF 357 (636)
T ss_pred EecCCccccee-------ecCCcccccccceecchhhhHHhccCCCeeeCccCCccccc
Confidence 35688877553 4455554444 56554 3322 22 59999887654
No 136
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.91 E-value=17 Score=39.39 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=30.4
Q ss_pred CCcccccccccCCCCc--eEEeCCCChhhHHHHHHHHhcCCCCccc
Q 009501 481 PGSCIICQEDYRDNEK--IGTLDCDHEYHAECLKKWLFIKNVCPIC 524 (533)
Q Consensus 481 e~~C~ICLEey~~~e~--v~~LpCgH~FH~~CI~qWL~~k~sCPvC 524 (533)
...|++|.-.++-.+- ..+-.|||.||..|.-.|......|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 4567777765543321 1222599999999999998888777555
No 137
>PLN02436 cellulose synthase A
Probab=37.31 E-value=30 Score=42.10 Aligned_cols=51 Identities=22% Similarity=0.463 Sum_probs=35.5
Q ss_pred CCCCcccccccccC---CCCceEEe-CCCChhhHHHHHHHHhc-CCCCcccccCcC
Q 009501 479 QEPGSCIICQEDYR---DNEKIGTL-DCDHEYHAECLKKWLFI-KNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~---~~e~v~~L-pCgH~FH~~CI~qWL~~-k~sCPvCR~~l~ 529 (533)
.....|-||-+++. +++.-+.. -|+=-.|+.|.+-=.+. +..||.||+...
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 44569999999974 34433333 58888999999543333 568999998654
No 138
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=37.06 E-value=36 Score=29.05 Aligned_cols=52 Identities=23% Similarity=0.440 Sum_probs=21.2
Q ss_pred CCCCCcccccccccCCC---Cc-eEEeCCCChhhHHHHHHHHhc-CCCCcccccCcC
Q 009501 478 DQEPGSCIICQEDYRDN---EK-IGTLDCDHEYHAECLKKWLFI-KNVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~---e~-v~~LpCgH~FH~~CI~qWL~~-k~sCPvCR~~l~ 529 (533)
......|-||-+++... +. +...-|+--.|+.|..==.+. ...||-||+...
T Consensus 6 ~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 6 NLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp --SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred hcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 34567899999987533 22 223368888899998765554 678999997653
No 139
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=35.86 E-value=7.7 Score=40.58 Aligned_cols=40 Identities=23% Similarity=0.472 Sum_probs=32.1
Q ss_pred CCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcC
Q 009501 479 QEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIK 518 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k 518 (533)
....+|.||+++|..+.....+.|--+||..|+..|+...
T Consensus 212 k~~rvC~~CF~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (288)
T KOG1729|consen 212 KPIRVCDICFEELEKGARGDREDSLPVFHGKCYPNWLTTG 251 (288)
T ss_pred CCceecHHHHHHHhcccccchhhccccccccccccccccc
Confidence 3445999999999876666666666699999999999873
No 140
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=33.97 E-value=26 Score=27.05 Aligned_cols=37 Identities=27% Similarity=0.640 Sum_probs=21.1
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhc--CCCCcccccC
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFI--KNVCPICKSE 527 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~--k~sCPvCR~~ 527 (533)
...|+.|-++|.... | + ..|.++=... ...||+|...
T Consensus 2 ~f~CP~C~~~~~~~~----L-~-----~H~~~~H~~~~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSESS----L-V-----EHCEDEHRSESKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHHH----H-H-----HHHHhHCcCCCCCccCCCchhh
Confidence 468999999665431 1 2 2233333222 3469999764
No 141
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.17 E-value=48 Score=30.13 Aligned_cols=46 Identities=17% Similarity=0.348 Sum_probs=34.5
Q ss_pred CCcccccccccCCCC-----------ceEEeCCCChhhHHHHHHHHhcCCCCccccc
Q 009501 481 PGSCIICQEDYRDNE-----------KIGTLDCDHEYHAECLKKWLFIKNVCPICKS 526 (533)
Q Consensus 481 e~~C~ICLEey~~~e-----------~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~ 526 (533)
...|--|+..|.... ......|++.||.+|=.-|-+.=..||-|-.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~~ 111 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCIH 111 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCCC
Confidence 356999999886531 1224479999999998888777778999953
No 142
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=30.26 E-value=36 Score=23.85 Aligned_cols=9 Identities=44% Similarity=1.217 Sum_probs=6.5
Q ss_pred CCCCccccc
Q 009501 518 KNVCPICKS 526 (533)
Q Consensus 518 k~sCPvCR~ 526 (533)
...||+|..
T Consensus 17 ~~~CP~Cg~ 25 (33)
T cd00350 17 PWVCPVCGA 25 (33)
T ss_pred CCcCcCCCC
Confidence 447899875
No 143
>PF14169 YdjO: Cold-inducible protein YdjO
Probab=29.91 E-value=26 Score=28.29 Aligned_cols=13 Identities=46% Similarity=1.132 Sum_probs=10.3
Q ss_pred CCCCcccccCcCC
Q 009501 518 KNVCPICKSEALA 530 (533)
Q Consensus 518 k~sCPvCR~~l~~ 530 (533)
...||+|+.++..
T Consensus 39 ~p~CPlC~s~M~~ 51 (59)
T PF14169_consen 39 EPVCPLCKSPMVS 51 (59)
T ss_pred CccCCCcCCcccc
Confidence 3589999998765
No 144
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=29.89 E-value=52 Score=40.08 Aligned_cols=52 Identities=13% Similarity=0.395 Sum_probs=36.5
Q ss_pred CCCCCcccccccccCC---CCc-eEEeCCCChhhHHHHHHHHhc-CCCCcccccCcC
Q 009501 478 DQEPGSCIICQEDYRD---NEK-IGTLDCDHEYHAECLKKWLFI-KNVCPICKSEAL 529 (533)
Q Consensus 478 ~eee~~C~ICLEey~~---~e~-v~~LpCgH~FH~~CI~qWL~~-k~sCPvCR~~l~ 529 (533)
......|-||-++... ++. |.+--|+--.|+.|.+-=.+. +..||.||+...
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4466789999999764 333 233368888999999543333 568999998654
No 145
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=29.78 E-value=40 Score=35.79 Aligned_cols=44 Identities=2% Similarity=-0.191 Sum_probs=33.3
Q ss_pred CCCcccccccccCCCCceEEeCCCC-hhhHHHHHHHHhcCCCCcccccCc
Q 009501 480 EPGSCIICQEDYRDNEKIGTLDCDH-EYHAECLKKWLFIKNVCPICKSEA 528 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH-~FH~~CI~qWL~~k~sCPvCR~~l 528 (533)
...+|..|-+.+-.. +..+|+| .||..|.. +....+||+|....
T Consensus 342 s~~~~~~~~~~~~st---~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLST---IWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hhcccccccCceeee---EeecCCcccChhhhhh--cccCCccccccccc
Confidence 446788888765442 5559998 88999988 66788999997643
No 146
>KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=29.76 E-value=27 Score=39.80 Aligned_cols=37 Identities=30% Similarity=0.593 Sum_probs=25.6
Q ss_pred CCCCcccccccccCC----CCc------eEEeCCCChhhHHHHHHHH
Q 009501 479 QEPGSCIICQEDYRD----NEK------IGTLDCDHEYHAECLKKWL 515 (533)
Q Consensus 479 eee~~C~ICLEey~~----~e~------v~~LpCgH~FH~~CI~qWL 515 (533)
+....|+||.|.|+. .+. .+.+-=|-+||..|+.+--
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~~ 557 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEKR 557 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchHH
Confidence 667889999999873 111 1223358899999987653
No 147
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.22 E-value=10 Score=39.02 Aligned_cols=47 Identities=32% Similarity=0.569 Sum_probs=36.3
Q ss_pred CCCcccccccccCCC-Cc--eEEeC--------CCChhhHHHHHHHHhcC-CCCccccc
Q 009501 480 EPGSCIICQEDYRDN-EK--IGTLD--------CDHEYHAECLKKWLFIK-NVCPICKS 526 (533)
Q Consensus 480 ee~~C~ICLEey~~~-e~--v~~Lp--------CgH~FH~~CI~qWL~~k-~sCPvCR~ 526 (533)
....|.||...|... .. -.++. |+|..|..|+..-+... ..||.|+.
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~ 264 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTW 264 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccc
Confidence 346799999999843 22 22335 99999999999998775 48999986
No 148
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=29.15 E-value=33 Score=26.92 Aligned_cols=42 Identities=21% Similarity=0.540 Sum_probs=19.4
Q ss_pred ccccccccCCCC-------ceEEeCCCChhhHHHHHHHHhcCCCCcccc
Q 009501 484 CIICQEDYRDNE-------KIGTLDCDHEYHAECLKKWLFIKNVCPICK 525 (533)
Q Consensus 484 C~ICLEey~~~e-------~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR 525 (533)
|--|+..|.... ....-.|++.||.+|=.--=++=-.||-|-
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 455666666542 122336999999999422112233688883
No 149
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=29.10 E-value=54 Score=40.12 Aligned_cols=51 Identities=20% Similarity=0.366 Sum_probs=35.1
Q ss_pred CCCCcccccccccCC---CCc-eEEeCCCChhhHHHHHHHHh-cCCCCcccccCcC
Q 009501 479 QEPGSCIICQEDYRD---NEK-IGTLDCDHEYHAECLKKWLF-IKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~---~e~-v~~LpCgH~FH~~CI~qWL~-~k~sCPvCR~~l~ 529 (533)
.....|-||-+++.. ++. |.+--|+=-.|+.|.+-=.+ .+..||.||+...
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 445699999999764 333 23336888899999843222 2668999998654
No 150
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=28.73 E-value=17 Score=28.12 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=10.0
Q ss_pred HHHHHHhc----CCCCcccccCcCC
Q 009501 510 CLKKWLFI----KNVCPICKSEALA 530 (533)
Q Consensus 510 CI~qWL~~----k~sCPvCR~~l~~ 530 (533)
-+.+++.. +..||+|.+++..
T Consensus 8 ~~~k~i~~l~~~~~~CPlC~r~l~~ 32 (54)
T PF04423_consen 8 ELKKYIEELKEAKGCCPLCGRPLDE 32 (54)
T ss_dssp HHHHHHHHHTT-SEE-TTT--EE-H
T ss_pred HHHHHHHHHhcCCCcCCCCCCCCCH
Confidence 34555543 3389999887643
No 151
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=27.71 E-value=23 Score=44.52 Aligned_cols=50 Identities=24% Similarity=0.559 Sum_probs=41.1
Q ss_pred CCCCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCC----CCcccccC
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKN----VCPICKSE 527 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~----sCPvCR~~ 527 (533)
......|-||.....+.+.+.+.-|.-.||..|++.-+.... .||-||.+
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 456678999999988876676678999999999999887633 69999875
No 152
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=27.59 E-value=17 Score=29.06 Aligned_cols=38 Identities=16% Similarity=0.446 Sum_probs=20.4
Q ss_pred CCCCcccccccccCCCCceEEe-CCCChhhHHHHHHHHh
Q 009501 479 QEPGSCIICQEDYRDNEKIGTL-DCDHEYHAECLKKWLF 516 (533)
Q Consensus 479 eee~~C~ICLEey~~~e~v~~L-pCgH~FH~~CI~qWL~ 516 (533)
.+...|.+|...|.--.....- .||++||.+|....+.
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~ 45 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIP 45 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEc
Confidence 4567899999999654333322 6999999999987664
No 153
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.75 E-value=18 Score=33.83 Aligned_cols=50 Identities=22% Similarity=0.552 Sum_probs=29.2
Q ss_pred CCCCCcccccccc-cCCCCceEEeCCCChhhHHHHHHHHhcCC----CCcccccC
Q 009501 478 DQEPGSCIICQED-YRDNEKIGTLDCDHEYHAECLKKWLFIKN----VCPICKSE 527 (533)
Q Consensus 478 ~eee~~C~ICLEe-y~~~e~v~~LpCgH~FH~~CI~qWL~~k~----sCPvCR~~ 527 (533)
.+++..|-||+.. |.++---.+.=|.-.||+.|--+--.+++ .|-+|++.
T Consensus 62 v~ddatC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcCcchhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 4667899999974 44441111222444677777665544433 58888753
No 154
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=26.58 E-value=53 Score=28.61 Aligned_cols=33 Identities=24% Similarity=0.517 Sum_probs=23.3
Q ss_pred CCCcccccccccCCCCceEEeC--CCChhhHHHHHHH
Q 009501 480 EPGSCIICQEDYRDNEKIGTLD--CDHEYHAECLKKW 514 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~Lp--CgH~FH~~CI~qW 514 (533)
....|.||... .+..+..-. |.-.||..|..++
T Consensus 54 ~~~~C~iC~~~--~G~~i~C~~~~C~~~fH~~CA~~~ 88 (110)
T PF13832_consen 54 FKLKCSICGKS--GGACIKCSHPGCSTAFHPTCARKA 88 (110)
T ss_pred cCCcCcCCCCC--CceeEEcCCCCCCcCCCHHHHHHC
Confidence 45689999987 342333333 7789999999764
No 155
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=25.90 E-value=38 Score=34.93 Aligned_cols=43 Identities=16% Similarity=0.316 Sum_probs=33.0
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCC--CCcccc
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKN--VCPICK 525 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~--sCPvCR 525 (533)
...|+|=...+..+ ++..+|+|+|-++=|.+.+..+. .||+=.
T Consensus 176 s~rdPis~~~I~nP--viSkkC~HvydrDsI~~~l~~~~~i~CPv~g 220 (262)
T KOG2979|consen 176 SNRDPISKKPIVNP--VISKKCGHVYDRDSIMQILCDEITIRCPVLG 220 (262)
T ss_pred cccCchhhhhhhch--hhhcCcCcchhhhhHHHHhccCceeeccccc
Confidence 45788876666654 66678999999999999998743 588743
No 156
>PRK11827 hypothetical protein; Provisional
Probab=25.18 E-value=24 Score=28.61 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=12.9
Q ss_pred HHHHhcCCCCcccccCcCC
Q 009501 512 KKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 512 ~qWL~~k~sCPvCR~~l~~ 530 (533)
++||..--.||+||.++..
T Consensus 2 d~~LLeILaCP~ckg~L~~ 20 (60)
T PRK11827 2 DHRLLEIIACPVCNGKLWY 20 (60)
T ss_pred ChHHHhheECCCCCCcCeE
Confidence 4566666778888877643
No 157
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=25.07 E-value=70 Score=28.51 Aligned_cols=24 Identities=21% Similarity=0.551 Sum_probs=18.8
Q ss_pred CChhhHHHHHHHHhc---------CCCCccccc
Q 009501 503 DHEYHAECLKKWLFI---------KNVCPICKS 526 (533)
Q Consensus 503 gH~FH~~CI~qWL~~---------k~sCPvCR~ 526 (533)
.=.||..||..+... +-.||.||.
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 668999999998754 225999985
No 158
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=24.76 E-value=5.5 Score=33.18 Aligned_cols=39 Identities=23% Similarity=0.477 Sum_probs=19.5
Q ss_pred CcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCc
Q 009501 482 GSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEA 528 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l 528 (533)
..|++|..+++... ++.+|..|-+. ++....||-|.+++
T Consensus 2 ~~CP~C~~~L~~~~-------~~~~C~~C~~~-~~~~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQG-------GHYHCEACQKD-YKKEAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEET-------TEEEETTT--E-EEEEEE-TTT-SB-
T ss_pred CcCCCCCCccEEeC-------CEEECcccccc-ceecccCCCcccHH
Confidence 46888887755432 55566666554 34456788887765
No 159
>PLN02400 cellulose synthase
Probab=24.56 E-value=58 Score=39.88 Aligned_cols=51 Identities=20% Similarity=0.388 Sum_probs=34.9
Q ss_pred CCCCcccccccccCC---CCc-eEEeCCCChhhHHHHHHHHh-cCCCCcccccCcC
Q 009501 479 QEPGSCIICQEDYRD---NEK-IGTLDCDHEYHAECLKKWLF-IKNVCPICKSEAL 529 (533)
Q Consensus 479 eee~~C~ICLEey~~---~e~-v~~LpCgH~FH~~CI~qWL~-~k~sCPvCR~~l~ 529 (533)
.....|-||-+++.. +|. |.+--|+=--|+.|.+==.+ .+..||.||+...
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 445699999999764 332 33336888899999843222 2568999998665
No 160
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=24.33 E-value=51 Score=25.15 Aligned_cols=35 Identities=14% Similarity=0.445 Sum_probs=26.5
Q ss_pred CcccccccccCCCCce-EEeCCCChhhHHHHHHHHh
Q 009501 482 GSCIICQEDYRDNEKI-GTLDCDHEYHAECLKKWLF 516 (533)
Q Consensus 482 ~~C~ICLEey~~~e~v-~~LpCgH~FH~~CI~qWL~ 516 (533)
..|.+|-..|..-... ..-.||++|+.+|....+.
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 5799999888764322 2336999999999988765
No 161
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=24.03 E-value=31 Score=37.00 Aligned_cols=48 Identities=19% Similarity=0.484 Sum_probs=25.9
Q ss_pred CCCCCcccccccccCCCCceEEeC---CCChhh--------HHHHHHHH-----hcCCCCccccc
Q 009501 478 DQEPGSCIICQEDYRDNEKIGTLD---CDHEYH--------AECLKKWL-----FIKNVCPICKS 526 (533)
Q Consensus 478 ~eee~~C~ICLEey~~~e~v~~Lp---CgH~FH--------~~CI~qWL-----~~k~sCPvCR~ 526 (533)
...++.|++|-+...- =..+.|. |+-.|- ..|+.+-- ..++.||.||.
T Consensus 12 edl~ElCPVCGDkVSG-YHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 12 EDLGELCPVCGDKVSG-YHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred cccccccccccCcccc-ceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 3456789999886542 2234444 444442 23443321 11347999985
No 162
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=23.93 E-value=10 Score=39.22 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=20.1
Q ss_pred CCCcccccccccCCCCceEEe--CCCChhhHHHHHHHHhcCCCCcccccC
Q 009501 480 EPGSCIICQEDYRDNEKIGTL--DCDHEYHAECLKKWLFIKNVCPICKSE 527 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~L--pCgH~FH~~CI~qWL~~k~sCPvCR~~ 527 (533)
....|+||-..-.-......- --.+.+|.-|-.+|--....||.|...
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 347899998754321000000 013456777999998889999999753
No 163
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.38 E-value=77 Score=26.79 Aligned_cols=45 Identities=24% Similarity=0.687 Sum_probs=28.0
Q ss_pred cccccccccCCCCceEEeCC--CChhhHHHHHHHHhcCCCCcccccCcCC
Q 009501 483 SCIICQEDYRDNEKIGTLDC--DHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 483 ~C~ICLEey~~~e~v~~LpC--gH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
.|--|-.++..+. .-.+-| .+.||.+|...- ....||-|..+++.
T Consensus 7 nCECCDrDLpp~s-~dA~ICtfEcTFCadCae~~--l~g~CPnCGGelv~ 53 (84)
T COG3813 7 NCECCDRDLPPDS-TDARICTFECTFCADCAENR--LHGLCPNCGGELVA 53 (84)
T ss_pred CCcccCCCCCCCC-CceeEEEEeeehhHhHHHHh--hcCcCCCCCchhhc
Confidence 3445556654332 112223 478999999863 36789999877653
No 164
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=23.05 E-value=36 Score=24.51 Aligned_cols=25 Identities=24% Similarity=0.713 Sum_probs=15.3
Q ss_pred cccccccccCCCCc--------eEEeCCCChhh
Q 009501 483 SCIICQEDYRDNEK--------IGTLDCDHEYH 507 (533)
Q Consensus 483 ~C~ICLEey~~~e~--------v~~LpCgH~FH 507 (533)
.|+=|.-.|...+. +....|+|+|.
T Consensus 4 ~Cp~C~~~y~i~d~~ip~~g~~v~C~~C~~~f~ 36 (36)
T PF13717_consen 4 TCPNCQAKYEIDDEKIPPKGRKVRCSKCGHVFF 36 (36)
T ss_pred ECCCCCCEEeCCHHHCCCCCcEEECCCCCCEeC
Confidence 57778777775543 33335777763
No 165
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.00 E-value=85 Score=32.58 Aligned_cols=41 Identities=15% Similarity=0.180 Sum_probs=30.6
Q ss_pred CCCCCCCccccccc-ccCCCCceEEe-CCCChhhHHHHHHHHh
Q 009501 476 SKDQEPGSCIICQE-DYRDNEKIGTL-DCDHEYHAECLKKWLF 516 (533)
Q Consensus 476 ~~~eee~~C~ICLE-ey~~~e~v~~L-pCgH~FH~~CI~qWL~ 516 (533)
..-..++.|++|.. ++....+...+ .|++.|+..|..-|..
T Consensus 90 S~~~~~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~ 132 (271)
T COG5574 90 SRFNREETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSI 132 (271)
T ss_pred cccccccccccccCcccccccccceeeecccccchhhhHHHHH
Confidence 34566788999988 55544333344 8999999999999987
No 166
>KOG4577 consensus Transcription factor LIM3, contains LIM and HOX domains [Transcription]
Probab=21.14 E-value=26 Score=36.74 Aligned_cols=41 Identities=29% Similarity=0.629 Sum_probs=29.4
Q ss_pred CCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCC
Q 009501 481 PGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALA 530 (533)
Q Consensus 481 e~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~ 530 (533)
...|+-|.+.+...+.|+. .=.|+||..|. .|-+|++.+.+
T Consensus 92 GTKCsaC~~GIpPtqVVRk-Aqd~VYHl~CF--------~C~iC~R~L~T 132 (383)
T KOG4577|consen 92 GTKCSACQEGIPPTQVVRK-AQDFVYHLHCF--------ACFICKRQLAT 132 (383)
T ss_pred CCcchhhcCCCChHHHHHH-hhcceeehhhh--------hhHhhhccccc
Confidence 4679999988766543333 35789999996 48888877654
No 167
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=20.81 E-value=37 Score=25.77 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=5.9
Q ss_pred CcccccccccCCC
Q 009501 482 GSCIICQEDYRDN 494 (533)
Q Consensus 482 ~~C~ICLEey~~~ 494 (533)
..|.+|...+..+
T Consensus 27 f~C~~C~~~l~~~ 39 (58)
T PF00412_consen 27 FKCSKCGKPLNDG 39 (58)
T ss_dssp SBETTTTCBTTTS
T ss_pred cccCCCCCccCCC
Confidence 3444444444443
No 168
>KOG3476 consensus Microtubule-associated protein CRIPT [Cytoskeleton]
Probab=20.74 E-value=18 Score=31.38 Aligned_cols=41 Identities=29% Similarity=0.657 Sum_probs=31.0
Q ss_pred CCCcccccccccCCCCceEEeCCCChhhHHHHHHHHhcCCCCcccccCcCCCC
Q 009501 480 EPGSCIICQEDYRDNEKIGTLDCDHEYHAECLKKWLFIKNVCPICKSEALATK 532 (533)
Q Consensus 480 ee~~C~ICLEey~~~e~v~~LpCgH~FH~~CI~qWL~~k~sCPvCR~~l~~~e 532 (533)
....|.||....... |-.||..|.++ +..|-+|.+.++..+
T Consensus 53 ~~~kC~iCk~~vHQ~--------GshYC~tCAY~----KgiCAMCGKki~nTK 93 (100)
T KOG3476|consen 53 ALAKCRICKQLVHQP--------GSHYCQTCAYK----KGICAMCGKKILNTK 93 (100)
T ss_pred ccchhHHHHHHhcCC--------cchhHhHhhhh----hhHHHHhhhHhhccc
Confidence 346899998775544 44699999987 888999988876543
No 169
>PF00357 Integrin_alpha: Integrin alpha cytoplasmic region; InterPro: IPR018184 Some alpha subunits are cleaved post- translationally to produce a heavy and a light chain linked by a disulphide bond [, ]. Integrin alpha chains share a conserved sequence which is found at the beginning of the cytoplasmic domain, just after the end of the transmembrane region. Within the N-terminal domain of alpha subunits, seven sequence repeats, each of approximately 60 amino acids, have been found []. It has been predicted that these repeats assume the beta-propeller fold. The domains contain seven four-stranded beta-sheets arranged in a torus around a pseudosymmetry axis []. Integrin ligands and a putative Mg2+ ion are predicted to bind to the upper face of the propeller, in a manner analogous to the way in which the trimeric G-protein beta subunit (G beta) (which also has a beta-propeller fold) binds the G protein alpha subunit []. Integrin cytoplasmic domains are normally less than 50 amino acids in length, with the beta-subunit sequences exhibiting greater homology to each other than the alpha-subunit sequences []. This is consistent with current evidence that the beta subunit is the principal site for binding of cytoskeletal and signalling molecules, whereas the alpha subunit has a regulatory role. The first ten residues of the alpha-subunit cytoplasmic domain appear to form an alpha helix that is terminated by a proline residue. The remainder of the domain is highly acidic in nature and this loops back to contact the membrane-proximal lysine anchor residue. This entry represents the conserved site of the C-terminal integrin alpha chain. ; PDB: 2LKJ_A 2LKE_A 2K8O_A 1DPK_A 2K9J_A 1DPQ_A 1S4W_A 1M8O_A 2K1A_A 2KNC_A ....
Probab=20.56 E-value=22 Score=21.23 Aligned_cols=9 Identities=33% Similarity=0.674 Sum_probs=6.7
Q ss_pred ccccccCCC
Q 009501 144 GSYKRKNTE 152 (533)
Q Consensus 144 g~~KRK~~~ 152 (533)
|||||+.+.
T Consensus 3 GFFKR~~~~ 11 (15)
T PF00357_consen 3 GFFKRQRPP 11 (15)
T ss_dssp CHHHHHHHH
T ss_pred ccccccCcc
Confidence 788888653
No 170
>KOG4021 consensus Mitochondrial ribosomal protein S18b [Translation, ribosomal structure and biogenesis]
Probab=20.55 E-value=47 Score=33.01 Aligned_cols=21 Identities=38% Similarity=0.816 Sum_probs=14.8
Q ss_pred HHHHHHHHh-cCCCCcccccCc
Q 009501 508 AECLKKWLF-IKNVCPICKSEA 528 (533)
Q Consensus 508 ~~CI~qWL~-~k~sCPvCR~~l 528 (533)
..||++=-. ..+-|||||.+-
T Consensus 97 ktCIrkn~~~~gnpCPICRDey 118 (239)
T KOG4021|consen 97 KTCIRKNGRFLGNPCPICRDEY 118 (239)
T ss_pred hHHHhhcCeecCCCCCccccce
Confidence 458877544 467899999764
No 171
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.36 E-value=58 Score=28.67 Aligned_cols=13 Identities=23% Similarity=0.718 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHhc
Q 009501 505 EYHAECLKKWLFI 517 (533)
Q Consensus 505 ~FH~~CI~qWL~~ 517 (533)
-||+.||..|.+.
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999875
Done!