Query 009502
Match_columns 533
No_of_seqs 254 out of 1179
Neff 4.7
Searched_HMMs 46136
Date Thu Mar 28 13:53:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03086 PRLI-interacting fact 99.2 6.1E-12 1.3E-16 138.3 4.7 105 167-282 408-541 (567)
2 PF02176 zf-TRAF: TRAF-type zi 99.2 4.6E-12 9.9E-17 99.6 1.2 59 216-274 1-60 (60)
3 PF02176 zf-TRAF: TRAF-type zi 98.7 5.4E-09 1.2E-13 82.2 2.2 56 188-243 1-60 (60)
4 PLN03086 PRLI-interacting fact 98.7 2.1E-08 4.6E-13 110.7 6.1 119 149-278 413-563 (567)
5 KOG0297 TNF receptor-associate 98.6 1.5E-07 3.2E-12 100.4 9.1 136 106-269 44-181 (391)
6 KOG0297 TNF receptor-associate 97.4 7E-05 1.5E-09 80.2 1.9 76 195-276 85-162 (391)
7 PF03145 Sina: Seven in absent 96.8 0.0011 2.3E-08 64.2 3.4 50 167-217 15-67 (198)
8 PF03145 Sina: Seven in absent 95.2 0.0072 1.6E-07 58.6 1.0 46 231-277 24-69 (198)
9 KOG2462 C2H2-type Zn-finger pr 88.9 0.3 6.6E-06 50.5 2.8 98 172-277 133-237 (279)
10 KOG3002 Zn finger protein [Gen 88.3 0.11 2.4E-06 54.3 -0.8 107 164-278 46-162 (299)
11 KOG2462 C2H2-type Zn-finger pr 88.1 0.6 1.3E-05 48.4 4.3 101 172-280 164-268 (279)
12 KOG3002 Zn finger protein [Gen 84.0 0.91 2E-05 47.6 3.3 105 196-306 48-158 (299)
13 PF05605 zf-Di19: Drought indu 72.7 2 4.4E-05 33.5 1.4 19 252-275 31-49 (54)
14 PF05605 zf-Di19: Drought indu 72.6 1.6 3.5E-05 34.0 0.8 44 197-244 3-49 (54)
15 cd03777 MATH_TRAF3 Tumor Necro 72.1 3.9 8.4E-05 40.0 3.5 31 319-349 21-52 (186)
16 PF13913 zf-C2HC_2: zinc-finge 68.2 2 4.3E-05 29.0 0.4 23 196-220 2-24 (25)
17 cd03778 MATH_TRAF2 Tumor Necro 67.0 2.2 4.8E-05 41.2 0.6 29 320-348 2-31 (164)
18 KOG2186 Cell growth-regulating 55.1 7 0.00015 40.4 1.7 43 172-217 6-48 (276)
19 KOG2186 Cell growth-regulating 54.8 5.6 0.00012 41.1 1.0 45 196-243 3-47 (276)
20 KOG3623 Homeobox transcription 52.8 8.8 0.00019 44.9 2.2 71 172-245 243-330 (1007)
21 KOG3608 Zn finger proteins [Ge 50.1 11 0.00025 40.7 2.4 12 20-31 20-31 (467)
22 smart00734 ZnF_Rad18 Rad18-lik 46.0 7.4 0.00016 26.6 0.2 18 203-220 6-23 (26)
23 KOG3608 Zn finger proteins [Ge 45.5 15 0.00033 39.8 2.5 43 173-217 183-227 (467)
24 COG5639 Uncharacterized conser 45.4 26 0.00057 29.9 3.4 45 64-121 20-64 (77)
25 PF07948 Nairovirus_M: Nairovi 43.6 13 0.00028 42.0 1.7 41 208-252 505-545 (645)
26 smart00734 ZnF_Rad18 Rad18-lik 40.6 23 0.0005 24.1 2.0 22 253-278 2-23 (26)
27 COG5082 AIR1 Arginine methyltr 34.5 24 0.00052 35.1 1.8 58 172-257 63-125 (190)
28 PF07948 Nairovirus_M: Nairovi 31.4 12 0.00025 42.4 -1.0 51 224-282 494-545 (645)
29 PF10038 DUF2274: Protein of u 30.9 66 0.0014 27.2 3.6 46 63-121 19-64 (69)
30 TIGR02098 MJ0042_CXXC MJ0042 f 30.3 55 0.0012 23.5 2.7 14 197-212 3-16 (38)
31 PRK00398 rpoP DNA-directed RNA 29.2 43 0.00093 25.3 2.0 29 196-235 3-31 (46)
32 smart00531 TFIIE Transcription 28.2 69 0.0015 30.0 3.7 39 192-235 95-133 (147)
33 PRK13758 anaerobic sulfatase-m 27.2 73 0.0016 33.4 4.1 55 22-80 14-86 (370)
34 smart00301 DM Doublesex DNA-bi 26.2 24 0.00052 28.4 0.2 36 203-239 7-42 (54)
35 PF05253 zf-U11-48K: U11-48K-l 25.7 26 0.00057 24.0 0.3 12 265-276 12-23 (27)
36 KOG3815 Transcription factor D 25.3 23 0.00049 37.4 -0.1 38 195-235 35-72 (322)
37 COG5082 AIR1 Arginine methyltr 23.8 49 0.0011 33.0 1.9 48 185-250 86-138 (190)
38 PF05716 AKAP_110: A-kinase an 23.6 55 0.0012 37.6 2.4 39 102-145 159-215 (685)
39 PF08209 Sgf11: Sgf11 (transcr 22.1 32 0.00069 25.0 0.2 22 197-220 5-26 (33)
40 smart00807 AKAP_110 A-kinase a 21.5 64 0.0014 37.3 2.4 39 102-145 330-386 (851)
41 KOG0006 E3 ubiquitin-protein l 21.3 62 0.0013 34.9 2.1 44 167-221 316-360 (446)
No 1
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.22 E-value=6.1e-12 Score=138.25 Aligned_cols=105 Identities=21% Similarity=0.513 Sum_probs=85.8
Q ss_pred eecccCCCCcccccCchhHHHHHhhcCCceeeCCCCCCCCccccchhhhhc------------------CcCCCcceecc
Q 009502 167 VDFKNEFHCNMKFNSEKELNEHMLHCGFISMICPNEGCNAKFSAGHLEKHD------------------SVCPFKIIPCE 228 (533)
Q Consensus 167 V~C~N~~GC~ekv~trkeLe~Hle~C~yR~V~CpN~gC~e~~~~~dLq~H~------------------~~Cp~rpV~Cp 228 (533)
|.|+| |.|.+ ....|..|+..|.|..+.||+.+|+..|.+.+++.|. ..| +.++.||
T Consensus 408 V~C~N---C~~~i-~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f~~s~LekH~~~~-Hkpv~Cp 482 (567)
T PLN03086 408 VECRN---CKHYI-PSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAFQQGEMEKHMKVF-HEPLQCP 482 (567)
T ss_pred EECCC---CCCcc-chhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCccchHHHHHHHHhc-CCCccCC
Confidence 66776 99999 6999999999999999999975566666655555554 444 4678998
Q ss_pred CCCCCccccccccccccccccccccCCCCCcCCCCCCCchh-----------HHHHHHhhchhHH
Q 009502 229 QKCPDTLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQC-----------MIQQHRHDDLCSH 282 (533)
Q Consensus 229 n~Cg~kI~R~eLe~Hl~~eCPkr~V~CpF~~~GC~~kv~R~-----------eL~~He~ecl~eH 282 (533)
|+..+.|..|..|+...||.+++.|+| |...+++. .|..|+..|...|
T Consensus 483 --Cg~~~~R~~L~~H~~thCp~Kpi~C~f----C~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt 541 (567)
T PLN03086 483 --CGVVLEKEQMVQHQASTCPLRLITCRF----CGDMVQAGGSAMDVRDRLRGMSEHESICGSRT 541 (567)
T ss_pred --CCCCcchhHHHhhhhccCCCCceeCCC----CCCccccCccccchhhhhhhHHHHHHhcCCcc
Confidence 998899999999998899999999999 99887644 6888888775554
No 2
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=99.19 E-value=4.6e-12 Score=99.61 Aligned_cols=59 Identities=29% Similarity=0.859 Sum_probs=45.2
Q ss_pred hcCcCCCcceeccCCCC-CccccccccccccccccccccCCCCCcCCCCCCCchhHHHHH
Q 009502 216 HDSVCPFKIIPCEQKCP-DTLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQH 274 (533)
Q Consensus 216 H~~~Cp~rpV~Cpn~Cg-~kI~R~eLe~Hl~~eCPkr~V~CpF~~~GC~~kv~R~eL~~H 274 (533)
|...||+++|.||+.|. ..|+|.+|..|+..+||+++++|+|..+||.+.++|.+|.+|
T Consensus 1 H~~~C~~~~v~C~~~cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H 60 (60)
T PF02176_consen 1 HEEECPFRPVPCPNGCCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH 60 (60)
T ss_dssp HHTTSTTSEEE-TT--S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred CcccCCCCEeeCCCCCcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence 77789999999997665 669999999998779999999999999999999999999988
No 3
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=98.72 E-value=5.4e-09 Score=82.16 Aligned_cols=56 Identities=32% Similarity=0.752 Sum_probs=44.7
Q ss_pred HHhhcCCceeeCCCCCCCCccccchhhhhcC-cCCCcceeccC---CCCCcccccccccc
Q 009502 188 HMLHCGFISMICPNEGCNAKFSAGHLEKHDS-VCPFKIIPCEQ---KCPDTLMRRDMDRH 243 (533)
Q Consensus 188 Hle~C~yR~V~CpN~gC~e~~~~~dLq~H~~-~Cp~rpV~Cpn---~Cg~kI~R~eLe~H 243 (533)
|+..|++++|.||+..|...+.+.+|+.|.. .||+++++|+. +|...++|.+|++|
T Consensus 1 H~~~C~~~~v~C~~~cc~~~i~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~~~l~~H 60 (60)
T PF02176_consen 1 HEEECPFRPVPCPNGCCNEMIPRKELDDHLENECPKRPVPCPYSPYGCKERVPREDLEEH 60 (60)
T ss_dssp HHTTSTTSEEE-TT--S-BEEECCCHHHHHHTTSTTSEEE-SS----S--EEEHHHHHHC
T ss_pred CcccCCCCEeeCCCCCcccceeHHHHHHHHHccCCCCcEECCCCCCCCCCccchhHHhCC
Confidence 7778999999999766888899999999997 89999999994 39999999999988
No 4
>PLN03086 PRLI-interacting factor K; Provisional
Probab=98.68 E-value=2.1e-08 Score=110.70 Aligned_cols=119 Identities=23% Similarity=0.456 Sum_probs=94.6
Q ss_pred CCCCccchhhhccc---CCceeeccc-----------------CCCCcccccCchhHHHHHhhcCCceeeCCCCCCCCcc
Q 009502 149 GFWSINRREAIAHI---LLKNVDFKN-----------------EFHCNMKFNSEKELNEHMLHCGFISMICPNEGCNAKF 208 (533)
Q Consensus 149 ~~W~~~rREIlal~---LLkeV~C~N-----------------~~GC~ekv~trkeLe~Hle~C~yR~V~CpN~gC~e~~ 208 (533)
+-|....|.+..|. +..+|.|++ |..|+..+ ...+|..|...| +.++.|+ |+..+
T Consensus 413 C~~~i~l~~l~lHe~~C~r~~V~Cp~~~Cg~v~~r~el~~H~~C~~Cgk~f-~~s~LekH~~~~-Hkpv~Cp---Cg~~~ 487 (567)
T PLN03086 413 CKHYIPSRSIALHEAYCSRHNVVCPHDGCGIVLRVEEAKNHVHCEKCGQAF-QQGEMEKHMKVF-HEPLQCP---CGVVL 487 (567)
T ss_pred CCCccchhHHHHHHhhCCCcceeCCcccccceeeccccccCccCCCCCCcc-chHHHHHHHHhc-CCCccCC---CCCCc
Confidence 66777777776433 234577874 45666666 466777777667 5788998 99999
Q ss_pred ccchhhhhcC-cCCCcceeccCCCCCccccc-----------cccccccccccccccCCCCCcCCCCCCCchhHHHHHHh
Q 009502 209 SAGHLEKHDS-VCPFKIIPCEQKCPDTLMRR-----------DMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQHRH 276 (533)
Q Consensus 209 ~~~dLq~H~~-~Cp~rpV~Cpn~Cg~kI~R~-----------eLe~Hl~~eCPkr~V~CpF~~~GC~~kv~R~eL~~He~ 276 (533)
.+.+|..|.. .||.+++.|+ +|+..+++. .|..| ...|+.+++.|.. |...+...+|..|+.
T Consensus 488 ~R~~L~~H~~thCp~Kpi~C~-fC~~~v~~g~~~~d~~d~~s~Lt~H-E~~CG~rt~~C~~----Cgk~Vrlrdm~~H~~ 561 (567)
T PLN03086 488 EKEQMVQHQASTCPLRLITCR-FCGDMVQAGGSAMDVRDRLRGMSEH-ESICGSRTAPCDS----CGRSVMLKEMDIHQI 561 (567)
T ss_pred chhHHHhhhhccCCCCceeCC-CCCCccccCccccchhhhhhhHHHH-HHhcCCcceEccc----cCCeeeehhHHHHHH
Confidence 9999999984 6999999998 799888654 79999 5789999999987 999999999999986
Q ss_pred hc
Q 009502 277 DD 278 (533)
Q Consensus 277 ec 278 (533)
.+
T Consensus 562 ~~ 563 (567)
T PLN03086 562 AV 563 (567)
T ss_pred Hh
Confidence 54
No 5
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=98.58 E-value=1.5e-07 Score=100.36 Aligned_cols=136 Identities=16% Similarity=0.279 Sum_probs=103.6
Q ss_pred HHHhhHHHHhhhccccccccccccccchhhhhHHHHHHHhhhcCCCCccchhhhcccCCceeecccC-CCCcccccCchh
Q 009502 106 IISDFVDEFALSKRNLFSRVSGWMSSEKREDRIDDFLQEMEISGFWSINRREAIAHILLKNVDFKNE-FHCNMKFNSEKE 184 (533)
Q Consensus 106 ~is~~iddFv~skrn~~srvsg~~~se~red~I~dfvqeme~~~~W~~~rREIlal~LLkeV~C~N~-~GC~ekv~trke 184 (533)
+++.+++.|.+.+-....-++.....+ .+- +--..+++++++. +.|.+. .||.|.+ ++..
T Consensus 44 fC~~C~~~~~~~~~~cp~~~~~~~~~~-------~~~-------~~~~~~~~~~~l~----i~c~~~~~GC~~~~-~l~~ 104 (391)
T KOG0297|consen 44 FCAGCLLESLSNHQKCPVCRQELTQAE-------ELP-------VPRALRRELLKLP----IRCIFASRGCRADL-ELEA 104 (391)
T ss_pred ccccccchhhccCcCCcccccccchhh-------ccC-------chHHHHHHHHhcc----cccccCCCCccccc-cHHH
Confidence 455666777766433433333333322 111 1224577788888 999874 8999999 7999
Q ss_pred HHHHHhhcCCceeeCCCCCCCCccccchhhhhc-CcCCCcceeccCCCCCccccccccccccccccccccCCCCCcCCCC
Q 009502 185 LNEHMLHCGFISMICPNEGCNAKFSAGHLEKHD-SVCPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKLANCPFYAVGCQ 263 (533)
Q Consensus 185 Le~Hle~C~yR~V~CpN~gC~e~~~~~dLq~H~-~~Cp~rpV~Cpn~Cg~kI~R~eLe~Hl~~eCPkr~V~CpF~~~GC~ 263 (533)
+..|+..| ..++|++ .|...+...++.+|+ ..|+++...|. .|...+.-..+..|... |...+.|+. .|.
T Consensus 105 ~~~Hl~~c--~~~~C~~-~C~~~~~~~d~~~hl~~~C~~~~~~c~-~~~~~~~~~~~~~h~~~--~~~~~~c~~---k~~ 175 (391)
T KOG0297|consen 105 LQGHLSTC--DPLKCPH-RCGVQVPRDDLEDHLEAECPRRSLKCS-LCQSDSILILLEAHEEN--PQAEVSCEL---KCG 175 (391)
T ss_pred HHhHhccC--CcccCcc-ccccccchHHHHHHHhcccccccccch-hhcCccchhhhhhcCCC--CCccccccc---cch
Confidence 99999999 8999998 499999999999998 67999999998 79988888889999544 888999998 687
Q ss_pred CCCchh
Q 009502 264 STIPQC 269 (533)
Q Consensus 264 ~kv~R~ 269 (533)
+...+.
T Consensus 176 ~~~l~~ 181 (391)
T KOG0297|consen 176 KQKLKR 181 (391)
T ss_pred hhhhhh
Confidence 655444
No 6
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.38 E-value=7e-05 Score=80.15 Aligned_cols=76 Identities=25% Similarity=0.586 Sum_probs=65.1
Q ss_pred ceeeCCC--CCCCCccccchhhhhcCcCCCcceeccCCCCCccccccccccccccccccccCCCCCcCCCCCCCchhHHH
Q 009502 195 ISMICPN--EGCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQ 272 (533)
Q Consensus 195 R~V~CpN--~gC~e~~~~~dLq~H~~~Cp~rpV~Cpn~Cg~kI~R~eLe~Hl~~eCPkr~V~CpF~~~GC~~kv~R~eL~ 272 (533)
-++.|++ .||.|.+.+..++.|+..| .++.||+.|+..++|.++..|+...|+.+...|.| |.....-..+.
T Consensus 85 l~i~c~~~~~GC~~~~~l~~~~~Hl~~c--~~~~C~~~C~~~~~~~d~~~hl~~~C~~~~~~c~~----~~~~~~~~~~~ 158 (391)
T KOG0297|consen 85 LPIRCIFASRGCRADLELEALQGHLSTC--DPLKCPHRCGVQVPRDDLEDHLEAECPRRSLKCSL----CQSDSILILLE 158 (391)
T ss_pred cccccccCCCCccccccHHHHHhHhccC--CcccCccccccccchHHHHHHHhcccccccccchh----hcCccchhhhh
Confidence 5677865 4999999999999999999 99999988999999999999998999999999999 65555555555
Q ss_pred HHHh
Q 009502 273 QHRH 276 (533)
Q Consensus 273 ~He~ 276 (533)
.|..
T Consensus 159 ~h~~ 162 (391)
T KOG0297|consen 159 AHEE 162 (391)
T ss_pred hcCC
Confidence 5553
No 7
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.
Probab=96.76 E-value=0.0011 Score=64.23 Aligned_cols=50 Identities=32% Similarity=0.505 Sum_probs=36.4
Q ss_pred eecccC-CCCcccccCchhHHHHHhhcCCceeeCCC--CCCCCccccchhhhhc
Q 009502 167 VDFKNE-FHCNMKFNSEKELNEHMLHCGFISMICPN--EGCNAKFSAGHLEKHD 217 (533)
Q Consensus 167 V~C~N~-~GC~ekv~trkeLe~Hle~C~yR~V~CpN--~gC~e~~~~~dLq~H~ 217 (533)
+.|+|. .||.+.+ ...++..|...|+|++..||. .+|.|.....+|..|.
T Consensus 15 ~pC~~~~~GC~~~~-~~~~~~~HE~~C~~~p~~CP~~~~~C~~~G~~~~l~~Hl 67 (198)
T PF03145_consen 15 FPCKNAKYGCTETF-PYSEKREHEEECPFRPCSCPFPGSGCDWQGSYKELLDHL 67 (198)
T ss_dssp EE-CCGGGT---EE--GGGHHHHHHT-TTSEEE-SSSSTT---EEECCCHHHHH
T ss_pred ecCCCCCCCCcccc-cccChhhHhccCCCcCCcCCCCCCCccccCCHHHHHHHH
Confidence 779985 7999999 699999999999999999998 6899999999998887
No 8
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.
Probab=95.23 E-value=0.0072 Score=58.56 Aligned_cols=46 Identities=24% Similarity=0.512 Sum_probs=23.0
Q ss_pred CCCccccccccccccccccccccCCCCCcCCCCCCCchhHHHHHHhh
Q 009502 231 CPDTLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQHRHD 277 (533)
Q Consensus 231 Cg~kI~R~eLe~Hl~~eCPkr~V~CpF~~~GC~~kv~R~eL~~He~e 277 (533)
|...++..++..| ...|+.++..||+...+|.+.++...|..|...
T Consensus 24 C~~~~~~~~~~~H-E~~C~~~p~~CP~~~~~C~~~G~~~~l~~Hl~~ 69 (198)
T PF03145_consen 24 CTETFPYSEKREH-EEECPFRPCSCPFPGSGCDWQGSYKELLDHLRD 69 (198)
T ss_dssp ---EE-GGGHHHH-HHT-TTSEEE-SSSSTT---EEECCCHHHHHHH
T ss_pred CcccccccChhhH-hccCCCcCCcCCCCCCCccccCCHHHHHHHHHH
Confidence 4444444444555 344555555555544578888888889999864
No 9
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=88.87 E-value=0.3 Score=50.49 Aligned_cols=98 Identities=18% Similarity=0.329 Sum_probs=70.2
Q ss_pred CCCCcccccCchhHHHHHhh-cCC---ceeeCCCCCCCCcc-ccchhhhhcCcCCCcceeccCCCCCccccc-ccccccc
Q 009502 172 EFHCNMKFNSEKELNEHMLH-CGF---ISMICPNEGCNAKF-SAGHLEKHDSVCPFKIIPCEQKCPDTLMRR-DMDRHCI 245 (533)
Q Consensus 172 ~~GC~ekv~trkeLe~Hle~-C~y---R~V~CpN~gC~e~~-~~~dLq~H~~~Cp~rpV~Cpn~Cg~kI~R~-eLe~Hl~ 245 (533)
|+.|+....+-..|..|.+. |+- ....|+ .|+... ..--|.-|+..= -.+-.|+ .|+..+.|. .|+.|+.
T Consensus 133 c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~--~C~K~YvSmpALkMHirTH-~l~c~C~-iCGKaFSRPWLLQGHiR 208 (279)
T KOG2462|consen 133 CPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCK--YCGKVYVSMPALKMHIRTH-TLPCECG-ICGKAFSRPWLLQGHIR 208 (279)
T ss_pred ccccccccccccccchhhcccccccccccccCC--CCCceeeehHHHhhHhhcc-CCCcccc-cccccccchHHhhcccc
Confidence 46788888777889999875 875 455788 899875 233334344210 0234676 799888887 5788988
Q ss_pred ccccccccCCCCCcCCCCCC-CchhHHHHHHhh
Q 009502 246 TVCQMKLANCPFYAVGCQST-IPQCMIQQHRHD 277 (533)
Q Consensus 246 ~eCPkr~V~CpF~~~GC~~k-v~R~eL~~He~e 277 (533)
+.=..++..|+. |... .-|..|..|+++
T Consensus 209 THTGEKPF~C~h----C~kAFADRSNLRAHmQT 237 (279)
T KOG2462|consen 209 THTGEKPFSCPH----CGKAFADRSNLRAHMQT 237 (279)
T ss_pred cccCCCCccCCc----ccchhcchHHHHHHHHh
Confidence 888889999998 8854 467888888874
No 10
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=88.26 E-value=0.11 Score=54.31 Aligned_cols=107 Identities=21% Similarity=0.398 Sum_probs=75.5
Q ss_pred CceeecccCCCCcccccCchhHH---HHHh--h-cCCceeeCCCCCCCCccccchhhhhc-CcCCCcceeccC---CCCC
Q 009502 164 LKNVDFKNEFHCNMKFNSEKELN---EHML--H-CGFISMICPNEGCNAKFSAGHLEKHD-SVCPFKIIPCEQ---KCPD 233 (533)
Q Consensus 164 LkeV~C~N~~GC~ekv~trkeLe---~Hle--~-C~yR~V~CpN~gC~e~~~~~dLq~H~-~~Cp~rpV~Cpn---~Cg~ 233 (533)
+.-++||. |-..+ +.--++ -|+. . |......|| .|...+. .-...++ .++....++||+ +|..
T Consensus 46 ~~lleCPv---C~~~l-~~Pi~QC~nGHlaCssC~~~~~~~CP--~Cr~~~g-~~R~~amEkV~e~~~vpC~~~~~GC~~ 118 (299)
T KOG3002|consen 46 LDLLDCPV---CFNPL-SPPIFQCDNGHLACSSCRTKVSNKCP--TCRLPIG-NIRCRAMEKVAEAVLVPCKNAKLGCTK 118 (299)
T ss_pred hhhccCch---hhccC-cccceecCCCcEehhhhhhhhcccCC--ccccccc-cHHHHHHHHHHHhceecccccccCCce
Confidence 33467776 43333 233333 3654 3 447888999 7988876 2222333 347778888885 6888
Q ss_pred ccccccccccccccccccccCCCCCcCCCCCCCchhHHHHHHhhc
Q 009502 234 TLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQHRHDD 278 (533)
Q Consensus 234 kI~R~eLe~Hl~~eCPkr~V~CpF~~~GC~~kv~R~eL~~He~ec 278 (533)
.++...-..| ...|-.++-.||+-...|.+.+.-.++-.|....
T Consensus 119 ~~~Y~~~~~H-E~~C~f~~~~CP~p~~~C~~~G~~~~l~~H~~~~ 162 (299)
T KOG3002|consen 119 SFPYGEKSKH-EKVCEFRPCSCPVPGAECKYTGSYKDLYAHLNDT 162 (299)
T ss_pred eecccccccc-ccccccCCcCCCCCcccCCccCcHHHHHHHHHhh
Confidence 8888777999 6899999999998777899999999998988754
No 11
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=88.07 E-value=0.6 Score=48.37 Aligned_cols=101 Identities=21% Similarity=0.339 Sum_probs=73.7
Q ss_pred CCCCcccccCchhHHHHHhhcCCceeeCCCCCCCCccc-cchhhhhcC-cCCCcceeccCCCCCccc-cccccccccccc
Q 009502 172 EFHCNMKFNSEKELNEHMLHCGFISMICPNEGCNAKFS-AGHLEKHDS-VCPFKIIPCEQKCPDTLM-RRDMDRHCITVC 248 (533)
Q Consensus 172 ~~GC~ekv~trkeLe~Hle~C~yR~V~CpN~gC~e~~~-~~dLq~H~~-~Cp~rpV~Cpn~Cg~kI~-R~eLe~Hl~~eC 248 (533)
|..|+...-+.-.|.-|+..=. .+..|. .|+..|. .-.||.|.. .=...|..|| .|+.-+. |..|..|+++.-
T Consensus 164 C~~C~K~YvSmpALkMHirTH~-l~c~C~--iCGKaFSRPWLLQGHiRTHTGEKPF~C~-hC~kAFADRSNLRAHmQTHS 239 (279)
T KOG2462|consen 164 CKYCGKVYVSMPALKMHIRTHT-LPCECG--ICGKAFSRPWLLQGHIRTHTGEKPFSCP-HCGKAFADRSNLRAHMQTHS 239 (279)
T ss_pred CCCCCceeeehHHHhhHhhccC-CCcccc--cccccccchHHhhcccccccCCCCccCC-cccchhcchHHHHHHHHhhc
Confidence 5678887756677888875300 123487 8999996 446788884 3668899999 8996655 889999988877
Q ss_pred cccccCCCCCcCCCCCCCchh-HHHHHHhhchh
Q 009502 249 QMKLANCPFYAVGCQSTIPQC-MIQQHRHDDLC 280 (533)
Q Consensus 249 Pkr~V~CpF~~~GC~~kv~R~-eL~~He~ecl~ 280 (533)
.-....|+- |...+.|. -|..|+++.+.
T Consensus 240 ~~K~~qC~~----C~KsFsl~SyLnKH~ES~C~ 268 (279)
T KOG2462|consen 240 DVKKHQCPR----CGKSFALKSYLNKHSESACL 268 (279)
T ss_pred CCccccCcc----hhhHHHHHHHHHHhhhhccc
Confidence 777788887 98777665 46788876543
No 12
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=83.95 E-value=0.91 Score=47.65 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=59.7
Q ss_pred eeeCCCCCCCCccccchhhh---hc--Cc-CCCcceeccCCCCCccccccccccccccccccccCCCCCcCCCCCCCchh
Q 009502 196 SMICPNEGCNAKFSAGHLEK---HD--SV-CPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQC 269 (533)
Q Consensus 196 ~V~CpN~gC~e~~~~~dLq~---H~--~~-Cp~rpV~Cpn~Cg~kI~R~eLe~Hl~~eCPkr~V~CpF~~~GC~~kv~R~ 269 (533)
.+.|| -|-..+..-.+|- |+ .. |......|| .|...|. .-...+++.++....++|||..+||+..++=.
T Consensus 48 lleCP--vC~~~l~~Pi~QC~nGHlaCssC~~~~~~~CP-~Cr~~~g-~~R~~amEkV~e~~~vpC~~~~~GC~~~~~Y~ 123 (299)
T KOG3002|consen 48 LLDCP--VCFNPLSPPIFQCDNGHLACSSCRTKVSNKCP-TCRLPIG-NIRCRAMEKVAEAVLVPCKNAKLGCTKSFPYG 123 (299)
T ss_pred hccCc--hhhccCcccceecCCCcEehhhhhhhhcccCC-ccccccc-cHHHHHHHHHHHhceecccccccCCceeeccc
Confidence 44466 5666655555543 44 22 336677777 5776665 33445555667777788888888887666555
Q ss_pred HHHHHHhhchhHHHHHHHHHhhcCCchhHHHHHHHHH
Q 009502 270 MIQQHRHDDLCSHLLYILQKLHRDKPLKVLKNRVEEL 306 (533)
Q Consensus 270 eL~~He~ecl~eHL~lL~~~i~lgckv~dLr~rLqeh 306 (533)
.-..|++.|... ..-|+.-...|...+--..+-.|
T Consensus 124 ~~~~HE~~C~f~--~~~CP~p~~~C~~~G~~~~l~~H 158 (299)
T KOG3002|consen 124 EKSKHEKVCEFR--PCSCPVPGAECKYTGSYKDLYAH 158 (299)
T ss_pred cccccccccccC--CcCCCCCcccCCccCcHHHHHHH
Confidence 557777766542 22223222345555544444444
No 13
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=72.74 E-value=2 Score=33.50 Aligned_cols=19 Identities=26% Similarity=0.646 Sum_probs=9.4
Q ss_pred ccCCCCCcCCCCCCCchhHHHHHH
Q 009502 252 LANCPFYAVGCQSTIPQCMIQQHR 275 (533)
Q Consensus 252 ~V~CpF~~~GC~~kv~R~eL~~He 275 (533)
.+.||. |.....+ .|..|+
T Consensus 31 ~v~CPi----C~~~~~~-~l~~Hl 49 (54)
T PF05605_consen 31 NVVCPI----CSSRVTD-NLIRHL 49 (54)
T ss_pred CccCCC----chhhhhh-HHHHHH
Confidence 466776 6543332 444444
No 14
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=72.59 E-value=1.6 Score=34.01 Aligned_cols=44 Identities=27% Similarity=0.522 Sum_probs=21.0
Q ss_pred eeCCCCCCCCccccchhhhhcCc--CC-CcceeccCCCCCccccccccccc
Q 009502 197 MICPNEGCNAKFSAGHLEKHDSV--CP-FKIIPCEQKCPDTLMRRDMDRHC 244 (533)
Q Consensus 197 V~CpN~gC~e~~~~~dLq~H~~~--Cp-~rpV~Cpn~Cg~kI~R~eLe~Hl 244 (533)
..|| +|+..+....|..|... .. ...+.|| -|...+. ..|..|+
T Consensus 3 f~CP--~C~~~~~~~~L~~H~~~~H~~~~~~v~CP-iC~~~~~-~~l~~Hl 49 (54)
T PF05605_consen 3 FTCP--YCGKGFSESSLVEHCEDEHRSESKNVVCP-ICSSRVT-DNLIRHL 49 (54)
T ss_pred cCCC--CCCCccCHHHHHHHHHhHCcCCCCCccCC-Cchhhhh-hHHHHHH
Confidence 3455 56665555555555411 11 2245666 5654433 2555553
No 15
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al
Probab=72.12 E-value=3.9 Score=40.01 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHH-hCCceeeccccccccc
Q 009502 319 DVRSLSFAIKDLEAK-LGPFKEDTVNRYSGEG 349 (533)
Q Consensus 319 ~I~sL~~~VkdLE~K-i~~le~WKI~~ysqkg 349 (533)
.|..|..++..||.. ..+..+|+|.+|+++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~G~hvwkI~~yS~~~ 52 (186)
T cd03777 21 RLADMDLRFQVLETASYNGVLIWKIRDYKRRK 52 (186)
T ss_pred HHHHHHHHHHHhhccccceEEEEEECChhHHH
Confidence 577888888999844 4899999999999853
No 16
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=68.23 E-value=2 Score=28.98 Aligned_cols=23 Identities=43% Similarity=1.001 Sum_probs=15.1
Q ss_pred eeeCCCCCCCCccccchhhhhcCcC
Q 009502 196 SMICPNEGCNAKFSAGHLEKHDSVC 220 (533)
Q Consensus 196 ~V~CpN~gC~e~~~~~dLq~H~~~C 220 (533)
++.|+ .|+..|....|+.|...|
T Consensus 2 l~~C~--~CgR~F~~~~l~~H~~~C 24 (25)
T PF13913_consen 2 LVPCP--ICGRKFNPDRLEKHEKIC 24 (25)
T ss_pred CCcCC--CCCCEECHHHHHHHHHhc
Confidence 35666 677777767777776655
No 17
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z
Probab=67.00 E-value=2.2 Score=41.16 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHH-HhCCceeecccccccc
Q 009502 320 VRSLSFAIKDLEA-KLGPFKEDTVNRYSGE 348 (533)
Q Consensus 320 I~sL~~~VkdLE~-Ki~~le~WKI~~ysqk 348 (533)
|..|.+++.+||. .+.+.++|+|.+|+++
T Consensus 2 ~~~~~~~~~~l~~~~~~g~fiWkI~~fs~~ 31 (164)
T cd03778 2 XADLEQKVLEXEASTYDGVFIWKISDFARK 31 (164)
T ss_pred hhHHHHHhhhccccccCCEEEEEECcHHHH
Confidence 4567778888885 4589999999999985
No 18
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=55.07 E-value=7 Score=40.40 Aligned_cols=43 Identities=19% Similarity=0.414 Sum_probs=29.4
Q ss_pred CCCCcccccCchhHHHHHhhcCCceeeCCCCCCCCccccchhhhhc
Q 009502 172 EFHCNMKFNSEKELNEHMLHCGFISMICPNEGCNAKFSAGHLEKHD 217 (533)
Q Consensus 172 ~~GC~ekv~trkeLe~Hle~C~yR~V~CpN~gC~e~~~~~dLq~H~ 217 (533)
|.-|++.+ ..-.++.|+..|+-..+.|. .|+..|..-++..|.
T Consensus 6 CnvCgEsv-KKp~vekH~srCrn~~fSCI--DC~k~F~~~sYknH~ 48 (276)
T KOG2186|consen 6 CNVCGESV-KKPQVEKHMSRCRNAYFSCI--DCGKTFERVSYKNHT 48 (276)
T ss_pred hhhhhhhc-cccchHHHHHhccCCeeEEe--ecccccccchhhhhh
Confidence 45677777 46677777777777777776 677777666666664
No 19
>KOG2186 consensus Cell growth-regulating nucleolar protein [Cell cycle control, cell division, chromosome partitioning]
Probab=54.84 E-value=5.6 Score=41.07 Aligned_cols=45 Identities=27% Similarity=0.508 Sum_probs=35.8
Q ss_pred eeeCCCCCCCCccccchhhhhcCcCCCcceeccCCCCCcccccccccc
Q 009502 196 SMICPNEGCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTLMRRDMDRH 243 (533)
Q Consensus 196 ~V~CpN~gC~e~~~~~dLq~H~~~Cp~rpV~Cpn~Cg~kI~R~eLe~H 243 (533)
...|- -|++.+..-.++.|+..|+..-++|- .|+..+.|.++..|
T Consensus 3 ~FtCn--vCgEsvKKp~vekH~srCrn~~fSCI-DC~k~F~~~sYknH 47 (276)
T KOG2186|consen 3 FFTCN--VCGESVKKPQVEKHMSRCRNAYFSCI-DCGKTFERVSYKNH 47 (276)
T ss_pred EEehh--hhhhhccccchHHHHHhccCCeeEEe-ecccccccchhhhh
Confidence 34676 68888888888888888888888886 78888888888888
No 20
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=52.78 E-value=8.8 Score=44.85 Aligned_cols=71 Identities=23% Similarity=0.455 Sum_probs=54.0
Q ss_pred CCCCcccccCchhHHHHHhh---cC-----------CceeeCCCCCCCCccccc-hhhhhcCc-CCCcceeccCCCCCcc
Q 009502 172 EFHCNMKFNSEKELNEHMLH---CG-----------FISMICPNEGCNAKFSAG-HLEKHDSV-CPFKIIPCEQKCPDTL 235 (533)
Q Consensus 172 ~~GC~ekv~trkeLe~Hle~---C~-----------yR~V~CpN~gC~e~~~~~-dLq~H~~~-Cp~rpV~Cpn~Cg~kI 235 (533)
|.-|...|..|..|+.|... |. .|..+|+ -|+.-|.++ +|+.|+.. -...|..|| .|+..+
T Consensus 243 C~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCt--ECgKAFKfKHHLKEHlRIHSGEKPfeCp-nCkKRF 319 (1007)
T KOG3623|consen 243 CMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCT--ECGKAFKFKHHLKEHLRIHSGEKPFECP-NCKKRF 319 (1007)
T ss_pred chhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhcccccc--ccchhhhhHHHHHhhheeecCCCCcCCc-cccccc
Confidence 56899999888889988752 43 3788999 899999765 47888854 778899999 599776
Q ss_pred c-ccccccccc
Q 009502 236 M-RRDMDRHCI 245 (533)
Q Consensus 236 ~-R~eLe~Hl~ 245 (533)
. -..+..|+.
T Consensus 320 SHSGSySSHmS 330 (1007)
T KOG3623|consen 320 SHSGSYSSHMS 330 (1007)
T ss_pred ccCCccccccc
Confidence 5 457778853
No 21
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=50.15 E-value=11 Score=40.68 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=9.4
Q ss_pred CCCccccCCCCC
Q 009502 20 DGGLTFHCNLSD 31 (533)
Q Consensus 20 ~~~~~~~c~~~d 31 (533)
...+-|+|..||
T Consensus 20 ~~nlwL~c~W~~ 31 (467)
T KOG3608|consen 20 PANLWLTCGWRD 31 (467)
T ss_pred ccceeeecchhh
Confidence 346778999998
No 22
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=45.96 E-value=7.4 Score=26.56 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=8.3
Q ss_pred CCCCccccchhhhhcCcC
Q 009502 203 GCNAKFSAGHLEKHDSVC 220 (533)
Q Consensus 203 gC~e~~~~~dLq~H~~~C 220 (533)
-|.+.+....+..|.+.|
T Consensus 6 iC~~~v~~~~in~HLD~C 23 (26)
T smart00734 6 VCFREVPENLINSHLDSC 23 (26)
T ss_pred CCcCcccHHHHHHHHHHh
Confidence 444444444444444433
No 23
>KOG3608 consensus Zn finger proteins [General function prediction only]
Probab=45.50 E-value=15 Score=39.79 Aligned_cols=43 Identities=23% Similarity=0.422 Sum_probs=30.1
Q ss_pred CCCcccccCchhHHHHHhh-cCCceeeCCCCCCCCccccch-hhhhc
Q 009502 173 FHCNMKFNSEKELNEHMLH-CGFISMICPNEGCNAKFSAGH-LEKHD 217 (533)
Q Consensus 173 ~GC~ekv~trkeLe~Hle~-C~yR~V~CpN~gC~e~~~~~d-Lq~H~ 217 (533)
.+|...+..+..|-.|+.. -....|.|| .|+..|..+. |-+|.
T Consensus 183 ~~Ct~~~~~k~~LreH~r~Hs~eKvvACp--~Cg~~F~~~tkl~DH~ 227 (467)
T KOG3608|consen 183 AMCTKHMGNKYRLREHIRTHSNEKVVACP--HCGELFRTKTKLFDHL 227 (467)
T ss_pred hhhhhhhccHHHHHHHHHhcCCCeEEecc--hHHHHhccccHHHHHH
Confidence 4666666666778888776 777888888 7888876443 44555
No 24
>COG5639 Uncharacterized conserved small protein [Function unknown]
Probab=45.35 E-value=26 Score=29.94 Aligned_cols=45 Identities=18% Similarity=0.448 Sum_probs=37.1
Q ss_pred ccccchHHHHHHHHHhhhhhhhhhhhcccCCCCcccCCChHHHHHhhHHHHhhhcccc
Q 009502 64 SVAVGIRTEMVEYLTKRSETFVAESVILEDPDQAEVSDHPYDIISDFVDEFALSKRNL 121 (533)
Q Consensus 64 sva~~~~~em~~yl~qrs~~~~~e~~~~~~~~~~~~s~~p~~~is~~iddFv~skrn~ 121 (533)
++.++|..+|.+|..=..++| |+ +..|.+.|..+++.|.+.-|++
T Consensus 20 ~~pa~L~~~L~~Yaai~~~t~------------Ge-~~~~a~Lia~MLe~Fla~DR~F 64 (77)
T COG5639 20 ELPASLHRALDDYAAIYAQTY------------GE-SATPATLIAHMLEAFLAGDRGF 64 (77)
T ss_pred ecChhHHHHHHHHHHHHHHhh------------cc-ccCHHHHHHHHHHHHHhccHHH
Confidence 577899999999988777666 33 5599999999999999987654
No 25
>PF07948 Nairovirus_M: Nairovirus M polyprotein-like; InterPro: IPR012487 The sequences in this family are similar to the Dugbe virus (Dugbe nairovirus) M polyprotein precursor (Q02004 from SWISSPROT), which includes glycoproteins G1 and G2. Both are thought to be inserted in the membrane of the Golgi complex of the infected host cell, and G1 is known to have a role in infection of vertebrate hosts []. ; PDB: 2L7X_A.
Probab=43.57 E-value=13 Score=41.99 Aligned_cols=41 Identities=29% Similarity=0.616 Sum_probs=22.6
Q ss_pred cccchhhhhcCcCCCcceeccCCCCCccccccccccccccccccc
Q 009502 208 FSAGHLEKHDSVCPFKIIPCEQKCPDTLMRRDMDRHCITVCQMKL 252 (533)
Q Consensus 208 ~~~~dLq~H~~~Cp~rpV~Cpn~Cg~kI~R~eLe~Hl~~eCPkr~ 252 (533)
+.+.|.+-|+..|.|.+ || +|...++-.-|.+| ...||+|.
T Consensus 505 vN~~DqElHdLNCsyNi--CP-YCanRLs~eGL~RH-V~~CPKRk 545 (645)
T PF07948_consen 505 VNAIDQELHDLNCSYNI--CP-YCANRLSDEGLVRH-VPQCPKRK 545 (645)
T ss_dssp SSHHHHHHHHHHHTTT----T-TT-----TTTHHHH-HTT-SHHH
T ss_pred cchhhHHHHhcCCCccc--Ch-hhhhccCccchhhh-cccCCchh
Confidence 34555566777777763 67 77777777778888 57788764
No 26
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=40.58 E-value=23 Score=24.14 Aligned_cols=22 Identities=27% Similarity=0.733 Sum_probs=14.6
Q ss_pred cCCCCCcCCCCCCCchhHHHHHHhhc
Q 009502 253 ANCPFYAVGCQSTIPQCMIQQHRHDD 278 (533)
Q Consensus 253 V~CpF~~~GC~~kv~R~eL~~He~ec 278 (533)
+.||- |...++...+..|++.|
T Consensus 2 v~CPi----C~~~v~~~~in~HLD~C 23 (26)
T smart00734 2 VQCPV----CFREVPENLINSHLDSC 23 (26)
T ss_pred CcCCC----CcCcccHHHHHHHHHHh
Confidence 56665 77666666777777655
No 27
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=34.46 E-value=24 Score=35.10 Aligned_cols=58 Identities=28% Similarity=0.580 Sum_probs=39.2
Q ss_pred CCCCcccccCchhHHHHHhh-cCCceeeCCCCCCCCccccchhhhhcC-cCCCcceeccCCCCCccccccccccccccc-
Q 009502 172 EFHCNMKFNSEKELNEHMLH-CGFISMICPNEGCNAKFSAGHLEKHDS-VCPFKIIPCEQKCPDTLMRRDMDRHCITVC- 248 (533)
Q Consensus 172 ~~GC~ekv~trkeLe~Hle~-C~yR~V~CpN~gC~e~~~~~dLq~H~~-~Cp~rpV~Cpn~Cg~kI~R~eLe~Hl~~eC- 248 (533)
|+.|+..+ |+.. || -+.|. .|.|. .|.. .||+. +.|. .|+. .-|+..+|
T Consensus 63 C~nCg~~G--------H~~~DCP--~~iC~--~C~~~-------~H~s~~C~~~-~~C~-~Cg~-------~GH~~~dC~ 114 (190)
T COG5082 63 CFNCGQNG--------HLRRDCP--HSICY--NCSWD-------GHRSNHCPKP-KKCY-NCGE-------TGHLSRDCN 114 (190)
T ss_pred cchhcccC--------cccccCC--hhHhh--hcCCC-------CcccccCCcc-cccc-cccc-------cCccccccC
Confidence 56788888 8776 99 37787 67443 5663 47777 7887 5874 36888888
Q ss_pred cc--cccCCCC
Q 009502 249 QM--KLANCPF 257 (533)
Q Consensus 249 Pk--r~V~CpF 257 (533)
|. .++.|-+
T Consensus 115 P~~~~~~~C~~ 125 (190)
T COG5082 115 PSKDQQKSCFD 125 (190)
T ss_pred cccccCcceec
Confidence 33 3445655
No 28
>PF07948 Nairovirus_M: Nairovirus M polyprotein-like; InterPro: IPR012487 The sequences in this family are similar to the Dugbe virus (Dugbe nairovirus) M polyprotein precursor (Q02004 from SWISSPROT), which includes glycoproteins G1 and G2. Both are thought to be inserted in the membrane of the Golgi complex of the infected host cell, and G1 is known to have a role in infection of vertebrate hosts []. ; PDB: 2L7X_A.
Probab=31.35 E-value=12 Score=42.41 Aligned_cols=51 Identities=20% Similarity=0.381 Sum_probs=25.2
Q ss_pred ceeccCCCCCc-cccccccccccccccccccCCCCCcCCCCCCCchhHHHHHHhhchhHH
Q 009502 224 IIPCEQKCPDT-LMRRDMDRHCITVCQMKLANCPFYAVGCQSTIPQCMIQQHRHDDLCSH 282 (533)
Q Consensus 224 pV~Cpn~Cg~k-I~R~eLe~Hl~~eCPkr~V~CpF~~~GC~~kv~R~eL~~He~ecl~eH 282 (533)
+-.|- .|.+. +---+-+-| +..|.+ --||| |-.+++-+-|..|.-.|+...
T Consensus 494 ~~~C~-kCEq~~vN~~DqElH-dLNCsy--NiCPY----CanRLs~eGL~RHV~~CPKRk 545 (645)
T PF07948_consen 494 GQTCI-KCEQKPVNAIDQELH-DLNCSY--NICPY----CANRLSDEGLVRHVPQCPKRK 545 (645)
T ss_dssp ----T-TT----SSHHHHHHH-HHHHTT--T--TT----T-----TTTHHHHHTT-SHHH
T ss_pred Cceee-eecccccchhhHHHH-hcCCCc--ccChh----hhhccCccchhhhcccCCchh
Confidence 44554 56532 334455667 677887 46898 888888888999988876543
No 29
>PF10038 DUF2274: Protein of unknown function (DUF2274); InterPro: IPR018733 Members of this family of hypothetical bacterial proteins have no known function.
Probab=30.94 E-value=66 Score=27.16 Aligned_cols=46 Identities=13% Similarity=0.409 Sum_probs=37.5
Q ss_pred CccccchHHHHHHHHHhhhhhhhhhhhcccCCCCcccCCChHHHHHhhHHHHhhhcccc
Q 009502 63 GSVAVGIRTEMVEYLTKRSETFVAESVILEDPDQAEVSDHPYDIISDFVDEFALSKRNL 121 (533)
Q Consensus 63 ~sva~~~~~em~~yl~qrs~~~~~e~~~~~~~~~~~~s~~p~~~is~~iddFv~skrn~ 121 (533)
-++.++|..+|++|..--++++ |.. .+|.+.|..++..|.++=|++
T Consensus 19 i~lpa~l~rdL~~Ya~~~~~~~------------g~~-~~~~~Li~~MLerFmatDRgF 64 (69)
T PF10038_consen 19 IELPASLHRDLVAYAEALAREY------------GQA-ADPAKLIPPMLERFMATDRGF 64 (69)
T ss_pred EeCCHHHHHHHHHHHHHHHHHh------------CCC-CCHHHHHHHHHHHHHHhcHHH
Confidence 3677889999999988877765 222 589999999999999997665
No 30
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=30.28 E-value=55 Score=23.46 Aligned_cols=14 Identities=29% Similarity=0.883 Sum_probs=7.7
Q ss_pred eeCCCCCCCCccccch
Q 009502 197 MICPNEGCNAKFSAGH 212 (533)
Q Consensus 197 V~CpN~gC~e~~~~~d 212 (533)
+.|| .|+..+....
T Consensus 3 ~~CP--~C~~~~~v~~ 16 (38)
T TIGR02098 3 IQCP--NCKTSFRVVD 16 (38)
T ss_pred EECC--CCCCEEEeCH
Confidence 4566 5666554443
No 31
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=29.22 E-value=43 Score=25.25 Aligned_cols=29 Identities=14% Similarity=0.419 Sum_probs=15.4
Q ss_pred eeeCCCCCCCCccccchhhhhcCcCCCcceeccCCCCCcc
Q 009502 196 SMICPNEGCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTL 235 (533)
Q Consensus 196 ~V~CpN~gC~e~~~~~dLq~H~~~Cp~rpV~Cpn~Cg~kI 235 (533)
.+.|+ .|+..+....... .+.|| +|+..+
T Consensus 3 ~y~C~--~CG~~~~~~~~~~--------~~~Cp-~CG~~~ 31 (46)
T PRK00398 3 EYKCA--RCGREVELDEYGT--------GVRCP-YCGYRI 31 (46)
T ss_pred EEECC--CCCCEEEECCCCC--------ceECC-CCCCeE
Confidence 35566 5766665433221 45666 576543
No 32
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=28.22 E-value=69 Score=29.96 Aligned_cols=39 Identities=18% Similarity=0.399 Sum_probs=23.3
Q ss_pred cCCceeeCCCCCCCCccccchhhhhcCcCCCcceeccCCCCCcc
Q 009502 192 CGFISMICPNEGCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTL 235 (533)
Q Consensus 192 C~yR~V~CpN~gC~e~~~~~dLq~H~~~Cp~rpV~Cpn~Cg~kI 235 (533)
-......|| .|+..+...+...... +-....|| .|+..+
T Consensus 95 ~~~~~Y~Cp--~C~~~y~~~ea~~~~d--~~~~f~Cp-~Cg~~l 133 (147)
T smart00531 95 TNNAYYKCP--NCQSKYTFLEANQLLD--MDGTFTCP-RCGEEL 133 (147)
T ss_pred cCCcEEECc--CCCCEeeHHHHHHhcC--CCCcEECC-CCCCEE
Confidence 344566777 6777777665554433 23447777 677654
No 33
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=27.21 E-value=73 Score=33.44 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=33.3
Q ss_pred CccccCCCCCH-----------------HHHHHHHHHHhhhh-hhhhhcccCCCccCCCCccccchHHHHHHHHHhh
Q 009502 22 GLTFHCNLSDT-----------------EIVHKIAQEFLPGL-ASACVDNTTGDIFRTPGSVAVGIRTEMVEYLTKR 80 (533)
Q Consensus 22 ~~~~~c~~~d~-----------------e~vh~~a~~ll~gl-A~a~vd~t~g~~f~~p~sva~~~~~em~~yl~qr 80 (533)
.=+|.|.||-. +++.++.+.++... ....|.=|.|.||-.| .++-.+|++|+.+.
T Consensus 14 ~CNl~C~yC~~~~~~~~~~~~~~~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~----~~~~~~~~~~~~~~ 86 (370)
T PRK13758 14 GCNLKCTYCFYHSLSDNRNVKSYGIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAG----LEFFEELMELQRKH 86 (370)
T ss_pred CcCCCCcccCCcCccccccccccCCCCHHHHHHHHHHHHhccCCceEEEEECCccccCC----hHHHHHHHHHHHHh
Confidence 44678888853 44555555444432 2234567789998776 24556777777664
No 34
>smart00301 DM Doublesex DNA-binding motif.
Probab=26.21 E-value=24 Score=28.43 Aligned_cols=36 Identities=33% Similarity=0.592 Sum_probs=21.3
Q ss_pred CCCCccccchhhhhcCcCCCcceeccCCCCCcccccc
Q 009502 203 GCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTLMRRD 239 (533)
Q Consensus 203 gC~e~~~~~dLq~H~~~Cp~rpV~Cpn~Cg~kI~R~e 239 (533)
-|..-....-|..|...|||..-.|+ .|.....|..
T Consensus 7 rCrnHg~~~~lKGHKr~C~~r~C~C~-kC~Li~~Rq~ 42 (54)
T smart00301 7 KCENHGVKVPLKGHKPECPFRDCECE-KCTLVEKRRA 42 (54)
T ss_pred hHhcCCCeeccCCcCCCCCCCCCcCC-CCcChHHHHH
Confidence 45445555566667667777777776 5665444443
No 35
>PF05253 zf-U11-48K: U11-48K-like CHHC zinc finger; InterPro: IPR022776 This zinc binding domain [] has four conserved zinc chelating residues in a CHHC pattern. This domain is predicted to have an RNA-binding function []. ; PDB: 2VY5_A 2VY4_A.
Probab=25.68 E-value=26 Score=23.96 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=5.2
Q ss_pred CCchhHHHHHHh
Q 009502 265 TIPQCMIQQHRH 276 (533)
Q Consensus 265 kv~R~eL~~He~ 276 (533)
.+++..|+.|+.
T Consensus 12 ~v~~~~l~~Hi~ 23 (27)
T PF05253_consen 12 RVPASELQKHIK 23 (27)
T ss_dssp EEEGGGHHHHHH
T ss_pred CcCHHHHHHHHH
Confidence 344444444443
No 36
>KOG3815 consensus Transcription factor Doublesex [Transcription]
Probab=25.33 E-value=23 Score=37.43 Aligned_cols=38 Identities=29% Similarity=0.623 Sum_probs=26.2
Q ss_pred ceeeCCCCCCCCccccchhhhhcCcCCCcceeccCCCCCcc
Q 009502 195 ISMICPNEGCNAKFSAGHLEKHDSVCPFKIIPCEQKCPDTL 235 (533)
Q Consensus 195 R~V~CpN~gC~e~~~~~dLq~H~~~Cp~rpV~Cpn~Cg~kI 235 (533)
|...|- -|.-.+....|+.|...|+|+.-.|. +|....
T Consensus 35 r~p~Ca--RCrnHG~~~~LKGHk~~C~~~~C~C~-kC~li~ 72 (322)
T KOG3815|consen 35 RGPKCA--RCENHGVLSRLKGHKRSCPYRDCPCE-KCGLVE 72 (322)
T ss_pred ccchhh--hhhccCcceeccCCCCCCCCCCCCch-HhcchH
Confidence 555666 67777777777777777777777776 666433
No 37
>COG5082 AIR1 Arginine methyltransferase-interacting protein, contains RING Zn-finger [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=23.77 E-value=49 Score=32.96 Aligned_cols=48 Identities=23% Similarity=0.405 Sum_probs=32.8
Q ss_pred HHHHHhh-cCCceeeCCCCCCCCccccchhhhhc-CcCC---CcceeccCCCCCccccccccccccccccc
Q 009502 185 LNEHMLH-CGFISMICPNEGCNAKFSAGHLEKHD-SVCP---FKIIPCEQKCPDTLMRRDMDRHCITVCQM 250 (533)
Q Consensus 185 Le~Hle~-C~yR~V~CpN~gC~e~~~~~dLq~H~-~~Cp---~rpV~Cpn~Cg~kI~R~eLe~Hl~~eCPk 250 (533)
+..|... |++. +.|. .|+... |. ..|+ .++..|. .|.. ..|....||.
T Consensus 86 ~~~H~s~~C~~~-~~C~--~Cg~~G-------H~~~dC~P~~~~~~~C~-~C~s-------~~H~s~~Cp~ 138 (190)
T COG5082 86 WDGHRSNHCPKP-KKCY--NCGETG-------HLSRDCNPSKDQQKSCF-DCNS-------TRHSSEDCPS 138 (190)
T ss_pred CCCcccccCCcc-cccc--cccccC-------ccccccCcccccCccee-ccCC-------CccccccCcc
Confidence 3458876 9988 8999 798874 66 4684 4555664 5764 3576777775
No 38
>PF05716 AKAP_110: A-kinase anchor protein 110 kDa (AKAP 110); InterPro: IPR018292 This family consists of several mammalian protein kinase A anchoring protein 3 (PRKA3) or A-kinase anchor protein 110 kDa (AKAP 110) sequences. Agents that increase intracellular cAMP are potent stimulators of sperm motility. Anchoring inhibitor peptides, designed to disrupt the interaction of the cAMP-dependent protein kinase A (PKA) with A kinase-anchoring proteins (AKAPs), are potent inhibitors of sperm motility. PKA anchoring is a key biochemical mechanism controlling motility. AKAP110 shares compartments with both RI and RII isoforms of PKA and may function as a regulator of both motility- and head-associated functions such as capacitation and the acrosome reaction []. This entry represents a sub group of the A-kinase anschor 110kDa protein.
Probab=23.60 E-value=55 Score=37.59 Aligned_cols=39 Identities=38% Similarity=0.797 Sum_probs=28.1
Q ss_pred ChHHHHHhhHH-----------------HHhhh-ccccccccccccccchhhhhHHHHHHHh
Q 009502 102 HPYDIISDFVD-----------------EFALS-KRNLFSRVSGWMSSEKREDRIDDFLQEM 145 (533)
Q Consensus 102 ~p~~~is~~id-----------------dFv~s-krn~~srvsg~~~se~red~I~dfvqem 145 (533)
|--+|+||+|| |||+. |||||+| | +-+.-|+.+.|+..|
T Consensus 159 H~KevVSDLIDS~MkNLHnvTG~LMTDsDFVsaVKr~lF~~--G---~QkatdImeAMl~rL 215 (685)
T PF05716_consen 159 HAKEVVSDLIDSCMKNLHNVTGVLMTDSDFVSAVKRNLFNH--G---SQKATDIMEAMLKRL 215 (685)
T ss_pred HHHHHHHHHHHHHHHHHhhccceeecchHHHHHHHHHHhhc--c---cccHHHHHHHHHHHH
Confidence 67799999999 56666 8888887 3 234566777777744
No 39
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=22.13 E-value=32 Score=25.04 Aligned_cols=22 Identities=27% Similarity=0.714 Sum_probs=9.7
Q ss_pred eeCCCCCCCCccccchhhhhcCcC
Q 009502 197 MICPNEGCNAKFSAGHLEKHDSVC 220 (533)
Q Consensus 197 V~CpN~gC~e~~~~~dLq~H~~~C 220 (533)
+.|+ .|+-.+....+..|++.|
T Consensus 5 ~~C~--nC~R~v~a~RfA~HLekC 26 (33)
T PF08209_consen 5 VECP--NCGRPVAASRFAPHLEKC 26 (33)
T ss_dssp EE-T--TTSSEEEGGGHHHHHHHH
T ss_pred EECC--CCcCCcchhhhHHHHHHH
Confidence 4444 354444444444444433
No 40
>smart00807 AKAP_110 A-kinase anchor protein 110 kDa. This family consists of several mammalian protein kinase A anchoring protein 3 (PRKA3) or A-kinase anchor protein 110 kDa (AKAP 110) sequences. Agents that increase intracellular cAMP are potent stimulators of sperm motility. Anchoring inhibitor peptides, designed to disrupt the interaction of the cAMP-dependent protein kinase A (PKA) with A kinase-anchoring proteins (AKAPs), are potent inhibitors of sperm motility. PKA anchoring is a key biochemical mechanism controlling motility. AKAP110 shares compartments with both RI and RII isoforms of PKA and may function as a regulator of both motility- and head-associated functions such as capacitation and the acrosome reaction PUBMED:10319321.
Probab=21.54 E-value=64 Score=37.26 Aligned_cols=39 Identities=44% Similarity=0.811 Sum_probs=27.0
Q ss_pred ChHHHHHhhHHH-----------------Hhhh-ccccccccccccccchhhhhHHHHHHHh
Q 009502 102 HPYDIISDFVDE-----------------FALS-KRNLFSRVSGWMSSEKREDRIDDFLQEM 145 (533)
Q Consensus 102 ~p~~~is~~idd-----------------Fv~s-krn~~srvsg~~~se~red~I~dfvqem 145 (533)
|--+|+||+||. ||+- |||||+| | +-+..|..+.|++.+
T Consensus 330 HaKEvVSDLIDS~mkNLHnvTG~LMTDsdFVSAVKR~~F~h--g---~Q~AtdimdaML~kL 386 (851)
T smart00807 330 HAKEVVSDLIDSFMKNLHNVTGVLMTDTDFVSAVKRNLFSH--G---SQKATDIMDAMLKKL 386 (851)
T ss_pred HHHHHHHHHHHHHHHHhhccceeeecchHHHHHHHHHHhhc--c---ccchHHHHHHHHHHH
Confidence 677899999995 4544 7777776 2 334566777777754
No 41
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=21.31 E-value=62 Score=34.87 Aligned_cols=44 Identities=20% Similarity=0.390 Sum_probs=23.5
Q ss_pred eecccCCCCcccccCchhHHHHHhhcCCceeeCCCCCCCCccccchhhh-hcCcCC
Q 009502 167 VDFKNEFHCNMKFNSEKELNEHMLHCGFISMICPNEGCNAKFSAGHLEK-HDSVCP 221 (533)
Q Consensus 167 V~C~N~~GC~ekv~trkeLe~Hle~C~yR~V~CpN~gC~e~~~~~dLq~-H~~~Cp 221 (533)
|.||+ +||++-+ ...- ..|.+.|++ ||+-.|.+.-++. |...|.
T Consensus 316 VlCP~-pgCG~gl-l~EP--------D~rkvtC~~-gCgf~FCR~C~e~yh~geC~ 360 (446)
T KOG0006|consen 316 VLCPR-PGCGAGL-LPEP--------DQRKVTCEG-GCGFAFCRECKEAYHEGECS 360 (446)
T ss_pred EecCC-CCCCccc-ccCC--------CCCcccCCC-CchhHhHHHHHhhhccccce
Confidence 66665 6666655 1111 234566664 5666666666653 555554
Done!