BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009505
(533 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 407 bits (1046), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/501 (44%), Positives = 300/501 (59%), Gaps = 51/501 (10%)
Query: 50 IWKESRPKPPNKPIRVHALKYAGLDVASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLR 109
IW + RP+ P KP+ L Y G+ K++ LR + + V++ LDEIAWL NLR
Sbjct: 154 IWTD-RPERPCKPLLTLGLDYTGISWKDKVADLRLKMAERNVMWFVVTALDEIAWLFNLR 212
Query: 110 GSDVPHSPVMYAYLIVEMDRAKLFVDDSKV-TPDVMDHL-------KNAGVELRPYNSIL 161
GSDV H+PV ++Y I+ ++ LF+D ++ P V +HL +++ PY SIL
Sbjct: 213 GSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAPSVKEHLLLDLGLEAEYRIQVHPYKSIL 272
Query: 162 SEIKSLAAQGA---QLWL-DPSS--VNAAIMNTYEIAIEKYLXXXXXXXXXXXMHTDTTG 215
SE+K+L A + ++W+ D +S V+ I + +
Sbjct: 273 SELKALCADLSPREKVWVSDKASYAVSETIPKDHRCCMP--------------------- 311
Query: 216 QSGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEV 275
+PI +KAVKNSAE EGM +H++DA AL + + WLE+E+ G +TE+
Sbjct: 312 ----------YTPICIAKAVKNSAESEGMRRAHIKDAVALCELFNWLEKEVPKGG-VTEI 360
Query: 276 DVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQY 335
ADK EFR +Q+ F+D SF TIS +G GAIIHY P P + +++L+DSGAQY
Sbjct: 361 SAADKAEEFRRQQADFVDLSFPTISSTGPTGAIIHYAPVPETNRTLSLDEVYLIDSGAQY 420
Query: 336 VDGTTDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIG 395
DGTTD+TRT+HF PTA EKECFT VL+GHIA+ A+FP T G +LD+FARS+LW G
Sbjct: 421 KDGTTDVTRTMHFETPTAYEKECFTYVLKGHIAVSAAVFPTGTKGHLLDSFARSALWDSG 480
Query: 396 LDYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLL 455
LDY HGTGHGVG+ LNVHEGP IS++ + PL GMIV++EPGYYED AFGIRIEN++
Sbjct: 481 LDYLHGTGHGVGSFLNVHEGPCGISYKTFSDEPLEAGMIVTDEPGYYEDGAFGIRIENVV 540
Query: 456 YVKEVGTPNRFGGVSYLGFEKLTFVPIQTKLVDLSLLSAAEIDWLNNYHSQVWEKVSPLL 515
V V T F L E LT VPIQTK++D+ L+ E DWLNNYH + + L
Sbjct: 541 LVVPVKTKYNFNNRGSLTLEPLTLVPIQTKMIDVDSLTDKECDWLNNYHLTCRDVIGKEL 600
Query: 516 DGFARQ----WLWNNTRPVAK 532
RQ WL T+P++K
Sbjct: 601 QKQGRQEALEWLIRETQPISK 621
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 106 bits (264), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 126/236 (53%), Gaps = 26/236 (11%)
Query: 233 KAVKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFL 292
+ VK+ E+E ++ A +++ +LE A +TE ++A LLE+ ++ G
Sbjct: 131 RMVKDEGEIE-----KIKQAIEISE-RAFLETVQQIRAGMTEKEIA-ALLEYTMRKEGAE 183
Query: 293 DTSFDTISGSGANGAIIHYKPEPGKCS--VVDSKKLFLLDSGAQYVDGTTDITRTVHFGE 350
+FDTI SG A+ H GK S VV+ + ++D GA Y + DITR V GE
Sbjct: 184 GVAFDTIVASGCRSALPH-----GKASDKVVERGDVIVIDFGATYENYCADITRVVSIGE 238
Query: 351 PTAREKECFTRVLQGHIALDQA--IFPQSTPGFVLDAFARSSLWKIGLD--YRHGTGHGV 406
P+ KE + VL+ A ++A I G +LD+ AR + + G + H GHG+
Sbjct: 239 PSDEVKEVHSIVLE---AQERALKIAKAGVTGKLLDSVAREFIREKGYGEFFGHSLGHGI 295
Query: 407 GAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVGT 462
G L VHEGP +ISFR N +PL E ++ + EPG Y + FGIRIE + +KE G
Sbjct: 296 G--LEVHEGP-AISFR--NDSPLPENVVFTVEPGIYLEGKFGIRIEEDVVLKEQGC 346
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 15/212 (7%)
Query: 245 LNSHLRDAAALAQ-FWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSG 303
+ +H + A + + F+ ++E ++ +E ++A+++ + G D SF+ I SG
Sbjct: 156 IKAHKKAAEIVDKVFYRFIEGKLEGK---SERELANRIEYMIKNEFGADDVSFEPIVASG 212
Query: 304 ANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTRVL 363
NGA H++P K D + + D GA+Y+ +D+TRTV G P+ K+ + V
Sbjct: 213 PNGANPHHRPSHRKIRKGD---VVIFDYGAKYLGYCSDVTRTVVVGPPSEEVKKVYEIVK 269
Query: 364 QGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLD--YRHGTGHGVGAALNVHEGPQSISF 421
+ Q + + P V+DA AR + K G + H TGHG+G ++VHE P
Sbjct: 270 EAQETAVQKV-AEGIPAEVVDATARGIISKYGYGEYFIHRTGHGLG--IDVHEEPY---I 323
Query: 422 RYGNMTPLVEGMIVSNEPGYYEDHAFGIRIEN 453
GN L +GM+ + EPG Y FG+RIE+
Sbjct: 324 SPGNKKILKDGMVFTIEPGIYLQGKFGVRIED 355
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 108/221 (48%), Gaps = 25/221 (11%)
Query: 247 SHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANG 306
+ D A +A EEI G K E +VA K+ E+ K +G +FDTI SG
Sbjct: 140 CEIADKAVMAAI-----EEITEGKK--EREVAAKV-EYLMKMNGAEKPAFDTIIASGYRS 191
Query: 307 AIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTRVLQGH 366
A+ H + D L ++D GA Y +DITRT+ G P ++KE + VL+
Sbjct: 192 ALPHGVASDKRIERGD---LVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIYEIVLEAQ 248
Query: 367 IALDQAIFPQSTPGFV---LDAFARSSLWKIGLD--YRHGTGHGVGAALNVHEGPQSISF 421
+ + PG LD+ AR+ + + G + H GHGVG L VHE P+ +
Sbjct: 249 ----KKAVESAKPGITAKELDSIARNIIAEYGYGEYFNHSLGHGVG--LEVHEWPRVSQY 302
Query: 422 RYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVGT 462
+ T L EGM+++ EPG Y G+RIE+ + + + G+
Sbjct: 303 ---DETVLREGMVITIEPGIYIPKIGGVRIEDTILITKNGS 340
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 115/232 (49%), Gaps = 20/232 (8%)
Query: 233 KAVKNSAELEGMLNS-HLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGF 291
+ +K E+E + + + D A +A EEI G + E +VA K+ E+ K +G
Sbjct: 122 RIIKTKEEIEIIEKACEIADKAVMAAI-----EEITEGKR--EREVAAKV-EYLMKMNGA 173
Query: 292 LDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEP 351
+FDTI SG A+ H + D L ++D GA Y +DITRT+ G P
Sbjct: 174 EKPAFDTIIASGHRSALPHGVASDKRIERGD---LVVIDLGALYNHYNSDITRTIVVGSP 230
Query: 352 TAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGL-DY-RHGTGHGVGAA 409
+++E + VL+ +A P T LD+ AR + + G DY H GHGVG
Sbjct: 231 NEKQREIYEIVLEAQKRAVEAAKPGMTAK-ELDSIAREIIKEYGYGDYFIHSLGHGVG-- 287
Query: 410 LNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 461
L +HE P+ + + T L EGM+++ EPG Y G+RIE+ + + E G
Sbjct: 288 LEIHEWPRISQY---DETVLKEGMVITIEPGIYIPKLGGVRIEDTVLITENG 336
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 101/194 (52%), Gaps = 16/194 (8%)
Query: 272 LTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCS--VVDSKKLFLL 329
++E++V+++L EF ++ G +SFD I SG A+ H G S V+++ L
Sbjct: 161 VSEIEVSNEL-EFFMRKQGATSSSFDIIVASGLRSALPH-----GVASEKVIETGDFVTL 214
Query: 330 DSGAQYVDGTTDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARS 389
D GA Y +DITRT+ GEP+ + KE + VL+ + I T G DA R
Sbjct: 215 DFGAYYKGYCSDITRTIAVGEPSDKLKEIYNIVLEAQLRGVNGIKAGLT-GREADALTRD 273
Query: 390 SLWKIGLD--YRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDHAF 447
+ + G + H TGHG+G L +HE P ++FR + T L GM V+ EPG Y
Sbjct: 274 YITEKGYGEYFGHSTGHGIG--LEIHEAP-GLAFR--SDTVLEPGMAVTVEPGIYIPGIG 328
Query: 448 GIRIENLLYVKEVG 461
G+RIE+ + V G
Sbjct: 329 GVRIEDDIIVTSEG 342
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 109/236 (46%), Gaps = 26/236 (11%)
Query: 233 KAVKNSAELEGMLNSHL---RDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQS 289
+ VK +AE++ + + R A + F V E A + E VA+
Sbjct: 148 RMVKEAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAE---------- 197
Query: 290 GFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGT-TDITRTVHF 348
G +F I GSG +GA H+ K V D + ++D G Y G +D TRT
Sbjct: 198 GHSAVAF-VIVGSGPHGADPHHGYSDRKLQVGD---IVVVDIGGTYEPGYYSDSTRTYSI 253
Query: 349 GEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLD--YRHGTGHGV 406
G+P+ + ++ + + A A+ P T V DA AR L GL + H TGHG+
Sbjct: 254 GDPSPDVAQQYSALQRAQRAAVDAVRPGVTAAQV-DAAARDVLADAGLAEYFVHRTGHGI 312
Query: 407 GAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVGT 462
G L VHE P ++ GN PLV GM S EPG Y +G RIE+++ V E G
Sbjct: 313 G--LCVHEEPYIVA---GNELPLVAGMAFSIEPGIYFPGRWGARIEDIVVVTENGA 363
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 11/167 (6%)
Query: 295 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAR 354
+F+ I SG N A H++P K D + +LD GA++ +DITRT+ GE R
Sbjct: 183 AFEPIVASGENAANPHHEPGERKIRKGD---IIILDYGARWKGYCSDITRTIGLGELDER 239
Query: 355 EKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLD--YRHGTGHGVGAALNV 412
+ + V + +A+ + +D+ AR + K G + H TGHG+G L+V
Sbjct: 240 LVKIYEVVKDAQESAFKAV-REGIKAKDVDSRAREVISKAGYGEYFIHRTGHGLG--LDV 296
Query: 413 HEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKE 459
HE P L GM + EPG Y G+RIE+ + V E
Sbjct: 297 HEEPY---IGPDGEVILKNGMTFTIEPGIYVPGLGGVRIEDDIVVDE 340
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 108/259 (41%), Gaps = 53/259 (20%)
Query: 235 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 294
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 295 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 353
S++TI GSG NG I+HY +C + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYT--ENECEMRDG-DLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 354 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 396
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 397 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 445
+ HG H +G L+VH+ R + P GM+++ EPG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 446 AFGIRIENLLYVKEVGTPN 464
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 108/259 (41%), Gaps = 53/259 (20%)
Query: 235 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 294
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 295 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 353
S++TI GSG NG I+HY +C + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYT--ENECEMRDG-DLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 354 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 396
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 397 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 445
+ HG H +G L+VH+ R + P GM+++ EPG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 446 AFGIRIENLLYVKEVGTPN 464
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 107/257 (41%), Gaps = 48/257 (18%)
Query: 235 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 294
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 295 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 353
S++TI GSG NG I+HY +C + L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYT--ENECXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 285
Query: 354 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL------------DY 398
++E + VL+ + P ++ V R S L K+G+ +
Sbjct: 286 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 345
Query: 399 RHGTGHGVGA--ALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDHAF 447
R HG+ A L+VH+ R + P GM+++ EPG Y +
Sbjct: 346 RPFFMHGLSAWLGLDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYRGI 402
Query: 448 GIRIENLLYVKEVGTPN 464
GIRIE+ + + E G N
Sbjct: 403 GIRIEDDIVITETGNEN 419
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 107/259 (41%), Gaps = 53/259 (20%)
Query: 235 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 294
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 295 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 353
S++TI GSG NG I+HY +C + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYT--ENECEMRDG-DLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 354 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 396
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 397 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 445
+ HG H +G L+VH+ R + P GM+++ PG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVAPGLYIAPDAEVPEQYR 399
Query: 446 AFGIRIENLLYVKEVGTPN 464
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 107/259 (41%), Gaps = 53/259 (20%)
Query: 235 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 294
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 295 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 353
S++TI GSG NG I+HY +C + D L L+ +G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYT--ENECEMRDG-DLVLIAAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 354 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 396
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 397 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 445
+ HG H +G L+VH+ R + P GM+++ EPG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 446 AFGIRIENLLYVKEVGTPN 464
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 107/259 (41%), Gaps = 53/259 (20%)
Query: 235 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 294
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 295 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 353
S++TI GSG NG I+HY +C + D L L+D+G +Y ITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYT--ENECEMRDG-DLVLIDAGCEYKGYAGAITRTFPVNGKFTQ 284
Query: 354 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 396
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 397 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 445
+ HG H +G L+VH+ R + P GM+++ EPG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 446 AFGIRIENLLYVKEVGTPN 464
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 106/259 (40%), Gaps = 53/259 (20%)
Query: 235 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 294
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 295 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 353
S++TI GSG NG I+HY + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYTENEXEMRDGD---LVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 354 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 396
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 397 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 445
+ HG H +G L+VH+ R + P GM+++ EPG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 446 AFGIRIENLLYVKEVGTPN 464
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 107/259 (41%), Gaps = 53/259 (20%)
Query: 235 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 294
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 295 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 353
S++TI GSG NG I+HY +C + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYT--ENECEMRDG-DLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 354 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 396
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 397 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 445
+ G H +G L+VH+ R + P GM+++ EPG Y +
Sbjct: 345 RPFFMAGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 446 AFGIRIENLLYVKEVGTPN 464
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 98/218 (44%), Gaps = 31/218 (14%)
Query: 266 IHNGAKLTEVDVADKLLE----FRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCSVV 321
I+N K + D + LE F K SG +F+TI SG N ++HY+ + +
Sbjct: 191 IYNVLKHAKADXXEYELEAQFDFTLKSSGIKHHAFNTILASGKNATVLHYEDNDAQ---I 247
Query: 322 DSKKLFLLDSGAQYVDGTTDITRTV-HFGEPTAREKECFTRVLQGHIALDQAIFPQSTPG 380
+ L LLD GAQ DI+ T G ++R+K+ + VL + I P
Sbjct: 248 QNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQIYNIVLNALKETTEIIKP-GLKF 306
Query: 381 FVLDAFARSSLWK----IGL---------DYRHGTGHGVGAALNVHEGPQSISFRYGNMT 427
L+ A+ L + +GL Y HG H +G L+ H+ Y +
Sbjct: 307 AALNEHAKKVLAEGCKAVGLIQEDEELSKYYYHGVSHFLG--LDTHDVGT-----YKDRV 359
Query: 428 PLVEGMIVSNEPGYY-EDHAFGIRIENLLYVKEVGTPN 464
L EG +++ EPG Y E+ + GIRIE+ + V + G N
Sbjct: 360 -LEEGXVITIEPGLYIEEESIGIRIEDDILVTKDGHEN 396
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 105/259 (40%), Gaps = 53/259 (20%)
Query: 235 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 294
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 295 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 353
S++TI GSG NG I+HY + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYTENEXEMRDGD---LVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 354 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 396
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 397 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 445
+ HG H +G L+VH+ R + P GM+++ PG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVAPGLYIAPDAEVPEQYR 399
Query: 446 AFGIRIENLLYVKEVGTPN 464
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 105/259 (40%), Gaps = 53/259 (20%)
Query: 235 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 294
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 295 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 353
S++TI GSG NG I+ Y + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILAYTENEXEMRDGD---LVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 354 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 396
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 397 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 445
+ HG H +G L+VH+ R + P GM+++ EPG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 446 AFGIRIENLLYVKEVGTPN 464
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 105/259 (40%), Gaps = 53/259 (20%)
Query: 235 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 294
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 295 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 353
S++TI GSG NG I+HY + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYTENEXEMRDGD---LVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 354 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 396
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 397 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 445
+ HG H +G L+V + R + P GM+++ EPG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVADVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 446 AFGIRIENLLYVKEVGTPN 464
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|2IW2|A Chain A, Crystal Structure Of Human Prolidase
pdb|2IW2|B Chain B, Crystal Structure Of Human Prolidase
pdb|2OKN|A Chain A, Crystal Strcture Of Human Prolidase
pdb|2OKN|B Chain B, Crystal Strcture Of Human Prolidase
Length = 494
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 109/270 (40%), Gaps = 57/270 (21%)
Query: 272 LTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHY--KPEPGKCSVVDSKKLFLL 329
+ E ++ + + G +S+ I GSG N A++HY P + + + L
Sbjct: 218 MKEYELESLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPND-RTIQNGDMCLF 276
Query: 330 DSGAQYVDGTTDITRTV-HFGEPTAREKECFTRVLQGHIALDQAIFPQ------------ 376
D G +Y +DIT + G+ TA +K + VL+ A+ A+ P
Sbjct: 277 DMGGEYYCFASDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADR 336
Query: 377 ------STPGFV---LDAFARSSLWKIGLDYRHGTGHGVGAALNVH------EGPQSI-- 419
+ G + +DA ++ L + + HG GH +G ++VH EG + I
Sbjct: 337 IHLEELAHMGILSGSVDAMVQAHLGAVFMP--HGLGHFLG--IDVHDVGGYPEGVERIDE 392
Query: 420 ----SFRYGNMTPLVEGMIVSNEPG-YYEDH----AFGIRIENLLYVKEVGTPNR-FGGV 469
S R L GM+++ EPG Y+ DH A + +EV R FGGV
Sbjct: 393 PGLRSLRTARH--LQPGMVLTVEPGIYFIDHLLDEALADPARASFFNREVLQRFRGFGGV 450
Query: 470 SY--------LGFEKLTFVPIQTKLVDLSL 491
G E LT VP + ++ +
Sbjct: 451 RIEEDVVVTDSGIELLTCVPRTVEEIEACM 480
>pdb|3L24|A Chain A, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|B Chain B, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|C Chain C, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L7G|A Chain A, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|B Chain B, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|C Chain C, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
Length = 517
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 62/163 (38%), Gaps = 41/163 (25%)
Query: 283 EFRSKQSGFL-------DTSFDTISGSGANGAIIHY----KPEPGKCSVVDSKKLFLLDS 331
EF +Q+ L D + I N AI+HY + P + + FL+D+
Sbjct: 192 EFEIQQAYLLATQHSENDNPYGNIVALNENCAILHYTHFDRVAPA------THRSFLIDA 245
Query: 332 GAQYVDGTTDITRTVHF-GEPTAREKECFTRVLQGHIALDQAIFP--------------- 375
GA + DITRT F GE E + Q IAL + P
Sbjct: 246 GANFNGYAADITRTYDFTGE--GEFAELVATMKQHQIALMNQLAPGKLYGELHLDCHQRV 303
Query: 376 -QSTPGFVLDAFARSSLWKIGLD---YRHGTGHGVGAALNVHE 414
Q+ F + + + G+ + HG GH +G L VH+
Sbjct: 304 AQTLSDFNIVDLSADEIVAKGITSTFFPHGLGHHIG--LQVHD 344
>pdb|3RVA|A Chain A, Crystal Structure Of Organophosphorus Acid Anhydrolase
From Alteromonas Macleodii
Length = 451
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 229 IAFSKAVKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQ 288
+ + +A K EL+ M R+A LA E+ K +E D+ L + +
Sbjct: 153 LHYQRAYKTDYELDCM-----REANKLAVAGHKAAEQAFREGK-SEFDI--NLAYAAASR 204
Query: 289 SGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRT 345
G D + +I + +I+HY + + +S+ FL+D+GA Y DITRT
Sbjct: 205 QGDNDVPYTSIVALNEHASILHYM-QXDTVAPKESRS-FLIDAGANYHGYAADITRT 259
>pdb|1P49|A Chain A, Structure Of Human Placental EstroneDHEA SULFATASE
Length = 562
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 444 DHAFGIRIENLLYVKEVGTPNRFGGVSYLGFEKLTFVPIQTKLVDLSLLSAAEIDWLNNY 503
++ +GI + NL K P G V GF++L F+P+Q +V ++LL+ A ++ L
Sbjct: 136 NYFYGISLTNLRDCK----PGE-GSVFTTGFKRLVFLPLQ--IVGVTLLTLAALNCLGLL 188
Query: 504 H 504
H
Sbjct: 189 H 189
>pdb|1KP0|A Chain A, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
pdb|1KP0|B Chain B, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
Length = 402
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 396 LDYR-HGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY----EDHAFGIR 450
L YR G GH G + + + R T L GM+VS EP E A G R
Sbjct: 314 LRYRTFGYGHSFGVLXHYYGREAGVELREDIXTVLEPGMVVSMEPMVMXPEGEPGAGGYR 373
Query: 451 IENLLYVKEVGTPNRFG 467
++L +KE T N G
Sbjct: 374 EHDILVIKENXTENITG 390
>pdb|3NW8|A Chain A, Glycoprotein B From Herpes Simplex Virus Type 1, Y179s
Mutant, High-Ph
pdb|3NW8|B Chain B, Glycoprotein B From Herpes Simplex Virus Type 1, Y179s
Mutant, High-Ph
pdb|3NW8|C Chain C, Glycoprotein B From Herpes Simplex Virus Type 1, Y179s
Mutant, High-Ph
pdb|3NW8|D Chain D, Glycoprotein B From Herpes Simplex Virus Type 1, Y179s
Mutant, High-Ph
pdb|3NWD|A Chain A, Glycoprotein B From Herpes Simplex Virus Type 1, Y179s
Mutant, Low-Ph
pdb|3NWD|B Chain B, Glycoprotein B From Herpes Simplex Virus Type 1, Y179s
Mutant, Low-Ph
pdb|3NWD|C Chain C, Glycoprotein B From Herpes Simplex Virus Type 1, Y179s
Mutant, Low-Ph
pdb|3NWD|D Chain D, Glycoprotein B From Herpes Simplex Virus Type 1, Y179s
Mutant, Low-Ph
Length = 703
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 33/115 (28%)
Query: 419 ISFRYGNMTPLVEGMIVSN----------EPG---------------YYEDHAFGIRIEN 453
+SFRY + PLVEG + N EP Y+E++A+ +
Sbjct: 575 VSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYS----H 630
Query: 454 LLYVKEVGTPNRFGGVSYLGFEKLTFVPIQT----KLVDLSLLSAAEIDWLNNYH 504
L ++ T + F ++ E FVP++ ++ D LL E+ N H
Sbjct: 631 QLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLH 685
>pdb|3NWA|A Chain A, Glycoprotein B From Herpes Simplex Virus Type 1, W174r
Mutant, Low-Ph
pdb|3NWA|B Chain B, Glycoprotein B From Herpes Simplex Virus Type 1, W174r
Mutant, Low-Ph
pdb|3NWA|C Chain C, Glycoprotein B From Herpes Simplex Virus Type 1, W174r
Mutant, Low-Ph
pdb|3NWA|D Chain D, Glycoprotein B From Herpes Simplex Virus Type 1, W174r
Mutant, Low-Ph
Length = 703
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 33/115 (28%)
Query: 419 ISFRYGNMTPLVEGMIVSN----------EPG---------------YYEDHAFGIRIEN 453
+SFRY + PLVEG + N EP Y+E++A+ +
Sbjct: 575 VSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYS----H 630
Query: 454 LLYVKEVGTPNRFGGVSYLGFEKLTFVPIQT----KLVDLSLLSAAEIDWLNNYH 504
L ++ T + F ++ E FVP++ ++ D LL E+ N H
Sbjct: 631 QLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLH 685
>pdb|3NWF|A Chain A, Glycoprotein B From Herpes Simplex Virus Type 1, Low-Ph
pdb|3NWF|B Chain B, Glycoprotein B From Herpes Simplex Virus Type 1, Low-Ph
pdb|3NWF|C Chain C, Glycoprotein B From Herpes Simplex Virus Type 1, Low-Ph
pdb|3NWF|D Chain D, Glycoprotein B From Herpes Simplex Virus Type 1, Low-Ph
Length = 703
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 33/115 (28%)
Query: 419 ISFRYGNMTPLVEGMIVSN----------EPG---------------YYEDHAFGIRIEN 453
+SFRY + PLVEG + N EP Y+E++A+ +
Sbjct: 575 VSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYS----H 630
Query: 454 LLYVKEVGTPNRFGGVSYLGFEKLTFVPIQT----KLVDLSLLSAAEIDWLNNYH 504
L ++ T + F ++ E FVP++ ++ D LL E+ N H
Sbjct: 631 QLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLH 685
>pdb|2GUM|A Chain A, Crystal Structure Of The Extracellular Domain Of
Glycoprotein B From Herpes Simplex Virus Type I
pdb|2GUM|B Chain B, Crystal Structure Of The Extracellular Domain Of
Glycoprotein B From Herpes Simplex Virus Type I
pdb|2GUM|C Chain C, Crystal Structure Of The Extracellular Domain Of
Glycoprotein B From Herpes Simplex Virus Type I
Length = 628
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 33/115 (28%)
Query: 419 ISFRYGNMTPLVEGMIVSN----------EPG---------------YYEDHAFGIRIEN 453
+SFRY + PLVEG + N EP Y+E++A+ +
Sbjct: 500 VSFRYEDQGPLVEGQLGENNELRLTRDAIEPCTVGHRRYFTFGGGYVYFEEYAYS----H 555
Query: 454 LLYVKEVGTPNRFGGVSYLGFEKLTFVPIQT----KLVDLSLLSAAEIDWLNNYH 504
L ++ T + F ++ E FVP++ ++ D LL E+ N H
Sbjct: 556 QLSRADITTVSTFIDLNITMLEDHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQLH 610
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,466,574
Number of Sequences: 62578
Number of extensions: 625755
Number of successful extensions: 1367
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 32
length of query: 533
length of database: 14,973,337
effective HSP length: 103
effective length of query: 430
effective length of database: 8,527,803
effective search space: 3666955290
effective search space used: 3666955290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)