BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009506
(533 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390,
chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=3
Length = 702
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/436 (73%), Positives = 377/436 (86%), Gaps = 3/436 (0%)
Query: 95 YDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154
YD RAR EKWRID FSTLI++YG +GN+DGCLN+YEEMKA+GVKPN++ YN L+D+MG
Sbjct: 268 YD-RARTEKWRIDAVTFSTLIRIYGVSGNYDGCLNIYEEMKALGVKPNLVIYNRLIDSMG 326
Query: 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 214
RAKRPWQ K IYK++ NG +PNW+TYA+L+RAYGRARYG+D L++YREMKEKG+ L+V
Sbjct: 327 RAKRPWQAKIIYKDLITNGFTPNWSTYAALVRAYGRARYGDDALAIYREMKEKGLSLTVI 386
Query: 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274
LYNTLL+MCAD Y DEAFEIF+DMK+ E C PDSWTFSS+IT+ +C G+VSEAEA +
Sbjct: 387 LYNTLLSMCADNRYVDEAFEIFQDMKNCETCDPDSWTFSSLITVYACSGRVSEAEAALLQ 446
Query: 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334
M EAGFEP LFVLTS+IQCYGKA++ DDVVR +++ ELGITPDDRFCGCLLNVMTQTP
Sbjct: 447 MREAGFEPTLFVLTSVIQCYGKAKQVDDVVRTFDQVLELGITPDDRFCGCLLNVMTQTPS 506
Query: 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDI-EGDFKKEATELFNSISKDVKKAYCNCLID 393
EE+GKL+ CVEK+ KLG VVK+L+EEQ+ EG FKKEA+EL +SI DVKKAY NCLID
Sbjct: 507 EEIGKLIGCVEKAKPKLGQVVKMLVEEQNCEEGVFKKEASELIDSIGSDVKKAYLNCLID 566
Query: 394 LCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSK 453
LCVNLN LE AC++L+LGL ++YT +QS+S TQWSLHLKSLSLGAALTALH+W+NDLS+
Sbjct: 567 LCVNLNKLERACEILQLGLEYDIYTGLQSKSATQWSLHLKSLSLGAALTALHVWMNDLSE 626
Query: 454 -ALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAA 512
ALESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVGWFLTT A
Sbjct: 627 AALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWFLTTSVA 686
Query: 513 AKSWLESRSSLVSVPA 528
AK+WLESR S V A
Sbjct: 687 AKAWLESRRSAGGVSA 702
Score = 103 bits (256), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/341 (26%), Positives = 158/341 (46%), Gaps = 33/341 (9%)
Query: 10 CSLFST-PKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNPQYPHG 68
C+L S PK R+F S+ + S F+S+ LQ VS+QE + + P
Sbjct: 21 CNLLSVYPKSTPRSFLSSYNPNSS-HFHSRNLLQATHVSVQEAIPQSEKSKLVDVDLPIP 79
Query: 69 KTGSSPKSYIWVNPKSPRASKLKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGC- 127
+ +S KSY+WVNPKSPRAS+L+ KSYD+R +S+LIKL A + D C
Sbjct: 80 EPTAS-KSYVWVNPKSPRASQLRRKSYDSR------------YSSLIKL---AESLDACK 123
Query: 128 ---LNVYEEMKAIGVK----PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 180
+V + + G K ++T NN+ + P + + + M S
Sbjct: 124 PNEADVCDVITGFGGKLFEQDAVVTLNNMTNP---ETAPLVLNNLLETMKP---SREVIL 177
Query: 181 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 240
Y ++ + +++ E + ++ EM E+G++ + T+++ G A E FE M
Sbjct: 178 YNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKM- 236
Query: 241 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 300
SS C+PD+ T ++MI G V A ++++ + + ++LI+ YG +
Sbjct: 237 SSFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNY 296
Query: 301 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 341
D + + LG+ P+ L++ M + + K++
Sbjct: 297 DGCLNIYEEMKALGVKPNLVIYNRLIDSMGRAKRPWQAKII 337
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 105/206 (50%), Gaps = 1/206 (0%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
++ +K++ + + + +++EM G+KP+ T+ ++ + P + +++M+
Sbjct: 178 YNVTMKVFRKSKDLEKSEKLFDEMLERGIKPDNATFTTIISCARQNGVPKRAVEWFEKMS 237
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
G P+ T A+++ AYGRA + LS+Y + + ++ ++TL+ + G D
Sbjct: 238 SFGCEPDNVTMAAMIDAYGRAGNVDMALSLYDRARTEKWRIDAVTFSTLIRIYGVSGNYD 297
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 290
I+E+MK+ +P+ ++ +I + +A+ ++ +++ GF PN +L
Sbjct: 298 GCLNIYEEMKAL-GVKPNLVIYNRLIDSMGRAKRPWQAKIIYKDLITNGFTPNWSTYAAL 356
Query: 291 IQCYGKAQRTDDVVRALNRLPELGIT 316
++ YG+A+ DD + + E G++
Sbjct: 357 VRAYGRARYGDDALAIYREMKEKGLS 382
>sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580,
chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2
SV=1
Length = 711
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 177/424 (41%), Positives = 268/424 (63%), Gaps = 3/424 (0%)
Query: 98 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 157
RA W+ D AFS L K++G AG++DG V +EMK++ VKPN++ YN LL+ MGRA
Sbjct: 281 RAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAG 340
Query: 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217
+P ++++ EM + GL+PN T +L++ YG+AR+ D L ++ EMK K + LYN
Sbjct: 341 KPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYN 400
Query: 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277
TLL MCAD+G +EA +F DMK S C+PD++++++M+ I GK +A +F EML+
Sbjct: 401 TLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLK 460
Query: 278 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ-TPKEE 336
AG + N+ T L+QC GKA+R DDVV + + G+ PDDR CGCLL+VM E+
Sbjct: 461 AGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMALCESSED 520
Query: 337 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCV 396
K++ C+E++N KL V L+++E+ K+E + N+ + ++ +CNCLID+C
Sbjct: 521 AEKVMACLERANKKLVTFVNLIVDEKTEYETVKEEFKLVINATQVEARRPFCNCLIDICR 580
Query: 397 NLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALE 456
N E A +LL LG +Y + +++ +WSL ++SLS+GAA TAL W+ L+ ++
Sbjct: 581 GNNRHERAHELLYLGTLFGLYPGLHNKTIKEWSLDVRSLSVGAAETALEEWMRTLANIIK 640
Query: 457 SGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSW 516
EE P L TG G H++S +GLA+ F HL++L+APF S D+ G F+ T+ SW
Sbjct: 641 RQEELPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS-DRPGIFVATKEDLVSW 698
Query: 517 LESR 520
LES+
Sbjct: 699 LESK 702
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/297 (25%), Positives = 128/297 (43%), Gaps = 16/297 (5%)
Query: 133 EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 192
EM GV+ + ITY+ ++ R + ++ M GL P+ TY+++L Y ++
Sbjct: 211 EMVKDGVELDNITYSTIITCAKRCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSG 270
Query: 193 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 252
E+ LS+Y G + ++ L M + G D + ++MKS + +P+ +
Sbjct: 271 KVEEVLSLYERAVATGWKPDAIAFSVLGKMFGEAGDYDGIRYVLQEMKSM-DVKPNVVVY 329
Query: 253 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 312
++++ GK A ++FNEMLEAG PN LT+L++ YGKA+ D ++ +
Sbjct: 330 NTLLEAMGRAGKPGLARSLFNEMLEAGLTPNEKTLTALVKIYGKARWARDALQLWEEMKA 389
Query: 313 LGITPDDRFCGCLLNVMTQTPKEE-----LGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 367
D LLN+ EE + E V+ Y L +I G
Sbjct: 390 KKWPMDFILYNTLLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAML-----NIYGS 444
Query: 368 FKK--EATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 419
K +A ELF + K V C CL+ +++ + +L + V D
Sbjct: 445 GGKAEKAMELFEEMLKAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPD 501
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 140 bits (354), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 120/484 (24%), Positives = 210/484 (43%), Gaps = 73/484 (15%)
Query: 105 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 162
RI PN ++ST+I + AG FD LN++ EM+ +G+ + ++YN LL + R +
Sbjct: 404 RIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEA 463
Query: 163 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222
I +EM G+ + TY +LL YG+ ++ V+ EMK + + ++ Y+TL+
Sbjct: 464 LDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDG 523
Query: 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 282
+ G EA EIF + KS+ + D +S++I G V A ++ +EM + G P
Sbjct: 524 YSKGGLYKEAMEIFREFKSA-GLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISP 582
Query: 283 NLFVLTSLIQCYGKAQRTDDVV------------------------RALNRLPELGITPD 318
N+ S+I +G++ D R + +L +
Sbjct: 583 NVVTYNSIIDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESN 642
Query: 319 DRFC----------GCLLNVMTQTPK-----------------------EELGKLVECVE 345
+R C+L V + + E+ L+E +
Sbjct: 643 NRTTKDCEEGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELR 702
Query: 346 KSNSKL-GYVVKLLLEEQDIEGDFKKEATELF---NSISKDVKKAYCNCLIDLCVNLNLL 401
++K+ G V LL+ +++ + +A LF N + A+ N L D+ +
Sbjct: 703 LFDNKVYGVVHGLLMGQRE---NVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQK 759
Query: 402 ENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEF 461
A + G + +V+ ++ S S L L +S GAA +H W+ ++ + G E
Sbjct: 760 RGAELVALEGRSRQVWENVWSDS----CLDLHLMSSGAARAMVHAWLLNIRSIVYEGHEL 815
Query: 462 PPLLGINTGHGKHK--YSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLES 519
P +L I TG GKH D L E L+ ++APFH S +G F ++ + +WL
Sbjct: 816 PKVLSILTGWGKHSKVVGDGALRRAVEVLLRGMDAPFHLSKCNMGRFTSSGSVVATWLRE 875
Query: 520 RSSL 523
++L
Sbjct: 876 SATL 879
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 146/306 (47%), Gaps = 8/306 (2%)
Query: 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW-QVKTIYKE 168
AFS LI YG +G + ++V+ MK G++PN++TYN ++D G+ + QV + E
Sbjct: 270 AFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDE 329
Query: 169 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 228
M NG+ P+ T+ SLL R E +++ EM + ++ V YNTLL G
Sbjct: 330 MQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQ 389
Query: 229 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 288
D AFEI M + P+ ++S++I + G+ EA +F EM G +
Sbjct: 390 MDLAFEILAQMP-VKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYN 448
Query: 289 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS 347
+L+ Y K R+++ + L + +GI D LL + K +E+ K+ +++
Sbjct: 449 TLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKRE 508
Query: 348 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKA---YCNCLID-LCVNLNLLEN 403
+ + L + +G KEA E+F +A + LID LC N L+ +
Sbjct: 509 HVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKN-GLVGS 567
Query: 404 ACKLLE 409
A L++
Sbjct: 568 AVSLID 573
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 116/237 (48%), Gaps = 2/237 (0%)
Query: 93 KSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT 152
K +D RN + D F++L+ + G ++ N+++EM ++ ++ +YN LLD
Sbjct: 325 KFFDEMQRN-GVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNTLLDA 383
Query: 153 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 212
+ + + I +M + PN +Y++++ + +A ++ L+++ EM+ G+ L
Sbjct: 384 ICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALD 443
Query: 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 272
YNTLL++ VG ++EA +I +M +S + D T+++++ +GK E + +F
Sbjct: 444 RVSYNTLLSIYTKVGRSEEALDILREM-ASVGIKKDVVTYNALLGGYGKQGKYDEVKKVF 502
Query: 273 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 329
EM PNL ++LI Y K + + G+ D L++ +
Sbjct: 503 TEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDAL 559
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 81/170 (47%)
Query: 149 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 208
++ T+GR + K I++ G +++L+ AYGR+ E+ +SV+ MKE G
Sbjct: 239 MISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYG 298
Query: 209 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268
++ ++ YN ++ C G + F D QPD TF+S++ +CS G A
Sbjct: 299 LRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAA 358
Query: 269 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+F+EM E ++F +L+ K + D L ++P I P+
Sbjct: 359 RNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPN 408
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 113/240 (47%), Gaps = 6/240 (2%)
Query: 98 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 157
R +NE+ ++ STL G G ++E A G + ++ L+ GR+
Sbjct: 227 RRKNEQGKLASAMISTL----GRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSG 282
Query: 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLY 216
+ +++ M + GL PN TY +++ A G+ + + EM+ G+Q +
Sbjct: 283 LHEEAISVFNSMKEYGLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITF 342
Query: 217 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276
N+LLA+C+ G + A +F++M ++ + D +++++++ G++ A + +M
Sbjct: 343 NSLLAVCSRGGLWEAARNLFDEM-TNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMP 401
Query: 277 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 336
PN+ +++I + KA R D+ + + LGI D LL++ T+ + E
Sbjct: 402 VKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSE 461
>sp|Q5G1S8|PP241_ARATH Pentatricopeptide repeat-containing protein At3g18110, chloroplastic
OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2
Length = 1440
Score = 136 bits (342), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 100/423 (23%), Positives = 205/423 (48%), Gaps = 18/423 (4%)
Query: 104 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
++++ +++++K+Y ++ + VY+ +K G++P+ TYN L+ R +RP +
Sbjct: 923 FKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGY 982
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
+ ++M + GL P +TY SL+ A+G+ + E ++ E+ KG++L + Y+T++ +
Sbjct: 983 LLMQQMRNLGLDPKLDTYKSLISAFGKQKCLEQAEQLFEELLSKGLKLDRSFYHTMMKIS 1042
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283
D G +A ++ + MK++ +P T ++ S G EAE + + + + E
Sbjct: 1043 RDSGSDSKAEKLLQMMKNA-GIEPTLATMHLLMVSYSSSGNPQEAEKVLSNLKDTEVELT 1101
Query: 284 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT-QTPKEELGKLVE 342
+S+I Y +++ + + L + + G+ PD R C + + K E+ L++
Sbjct: 1102 TLPYSSVIDAYLRSKDYNSGIERLLEMKKEGLEPDHRIWTCFVRAASFSKEKIEVMLLLK 1161
Query: 343 CVEKSNSKLGYVVKLL-----LEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVN 397
+E L ++LL L +++G F+K SI + + N L++L
Sbjct: 1162 ALEDIGFDLP--IRLLAGRPELLVSEVDGWFEK-----LKSIEDNAALNFVNALLNLLWA 1214
Query: 398 LNLLENACKLLELGLTLEVYT-DIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKA-L 455
L A + +LG+ +++ D+ + W + LS GAAL AL +W++ + A L
Sbjct: 1215 FELRATASWVFQLGIKRGIFSLDVFRVADKDWGADFRRLSGGAALVALTLWLDHMQDASL 1274
Query: 456 ESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKS 515
E E P + + TG +Y+ L ++ L E+ +PF + G + + +
Sbjct: 1275 EGYPESPKSVVLITGTA--EYNGISLDKTLKACLWEMGSPFLPCKTRTGLLVAKAHSLRM 1332
Query: 516 WLE 518
WL+
Sbjct: 1333 WLK 1335
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 118/233 (50%)
Query: 99 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 158
RN R D ++TL+ N DG + V+E+M+A +P++ TYN ++ GR
Sbjct: 288 VRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGL 347
Query: 159 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 218
+ + ++ E+ G P+ TY SLL A+ R R E VY++M++ G YNT
Sbjct: 348 AAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGKDEMTYNT 407
Query: 219 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278
++ M G D A ++++DMK PD+ T++ +I + EA A+ +EML+
Sbjct: 408 IIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAALMSEMLDV 467
Query: 279 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 331
G +P L ++LI Y KA + ++ + + G PD+ +L+V+ +
Sbjct: 468 GIKPTLQTYSALICGYAKAGKREEAEDTFSCMLRSGTKPDNLAYSVMLDVLLR 520
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 38/213 (17%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVKTI 165
D ++T+I +YG G D L +Y++MK + G P+ ITY L+D++G+A R + +
Sbjct: 401 DEMTYNTIIHMYGKQGQLDLALQLYKDMKGLSGRNPDAITYTVLIDSLGKANRTVEAAAL 460
Query: 166 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225
EM D G+ P TY++L+ Y +A
Sbjct: 461 MSEMLDVGIKPTLQTYSALICGYAKA---------------------------------- 486
Query: 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 285
G +EA + F M S +PD+ +S M+ + + +A ++ +M+ G P+
Sbjct: 487 -GKREEAEDTFSCMLRS-GTKPDNLAYSVMLDVLLRGNETRKAWGLYRDMISDGHTPSYT 544
Query: 286 VLTSLIQCYGKAQRTDDVVRALNRLPEL-GITP 317
+ +I K R+DD+ + + + EL G+ P
Sbjct: 545 LYELMILGLMKENRSDDIQKTIRDMEELCGMNP 577
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 108/232 (46%), Gaps = 3/232 (1%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
++ +I+ YG + +V ++ G P++ T+N+L+ + + + I+ M
Sbjct: 755 YTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMSAYAQCGCYERARAIFNTMM 814
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
+G SP + LL A E+ V E+++ G ++S + +L A G
Sbjct: 815 RDGPSPTVESINILLHALCVDGRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIF 874
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTS 289
E +I+ MK++ P + MI + C+GK V +AE M +EM EA F+ L + S
Sbjct: 875 EVKKIYSSMKAA-GYLPTIRLYRMMIELL-CKGKRVRDAEIMVSEMEEANFKVELAIWNS 932
Query: 290 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 341
+++ Y + V+ R+ E G+ PD+ L+ + + + E G L+
Sbjct: 933 MLKMYTAIEDYKKTVQVYQRIKETGLEPDETTYNTLIIMYCRDRRPEEGYLL 984
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 94/208 (45%), Gaps = 3/208 (1%)
Query: 122 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181
G + V EE++ +G K + + +LD RA ++VK IY M G P Y
Sbjct: 836 GRLEELYVVVEELQDMGFKISKSSILLMLDAFARAGNIFEVKKIYSSMKAAGYLPTIRLY 895
Query: 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241
++ + + D + EM+E ++ + ++N++L M + + ++++ +K
Sbjct: 896 RMMIELLCKGKRVRDAEIMVSEMEEANFKVELAIWNSMLKMYTAIEDYKKTVQVYQRIKE 955
Query: 242 SENCQPDSWTFSSMITICSCRGKV-SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 300
+ +PD T++++I I CR + E + +M G +P L SLI +GK +
Sbjct: 956 T-GLEPDETTYNTLI-IMYCRDRRPEEGYLLMQQMRNLGLDPKLDTYKSLISAFGKQKCL 1013
Query: 301 DDVVRALNRLPELGITPDDRFCGCLLNV 328
+ + L G+ D F ++ +
Sbjct: 1014 EQAEQLFEELLSKGLKLDRSFYHTMMKI 1041
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 10/183 (5%)
Query: 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEM---TDNGLSPNWNTYASLLRAYGRARYGEDT 197
PN +L +GR W +++ E+ + + Y +++ Y R+
Sbjct: 189 PNARMVAAILGVLGR----WNQESLAVEIFTRAEPTVGDRVQVYNAMMGVYSRSGKFSKA 244
Query: 198 LSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSM 255
+ M+++G + +NTL+ A G T + A E+ DM + +PD+ T++++
Sbjct: 245 QELVDAMRQRGCVPDLISFNTLINARLKSGGLTPNLAVELL-DMVRNSGLRPDAITYNTL 303
Query: 256 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 315
++ CS + A +F +M +P+L+ ++I YG+ + R L G
Sbjct: 304 LSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMISVYGRCGLAAEAERLFMELELKGF 363
Query: 316 TPD 318
PD
Sbjct: 364 FPD 366
Score = 40.4 bits (93), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 271
S T+Y TLL C + EA ++F D++ S C+ SM+ + G A +
Sbjct: 680 SSTMYETLLHCCVANEHYAEASQVFSDLRLS-GCEASESVCKSMVVVYCKLGFPETAHQV 738
Query: 272 FNEMLEAGFE----PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 327
N+ GF P + T +I+ YGK + + L + G TPD + L++
Sbjct: 739 VNQAETKGFHFACSP---MYTDIIEAYGKQKLWQKAESVVGNLRQSGRTPDLKTWNSLMS 795
Query: 328 VMTQ 331
Q
Sbjct: 796 AYAQ 799
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/418 (22%), Positives = 188/418 (44%), Gaps = 8/418 (1%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D + TLI ++ AG D +++Y+ M+A G+ P+ TY+ +++ +G+A ++
Sbjct: 433 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCLGKAGHLPAAHKLF 492
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
EM D G +PN TY ++ + +AR ++ L +YR+M+ G + Y+ ++ +
Sbjct: 493 CEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHC 552
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
GY +EA +F +M+ +N PD + ++ + G V +A + ML AG PN+
Sbjct: 553 GYLEEAEAVFTEMQ-QKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPT 611
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ-TPKEELGKLVECVE 345
SL+ + + + + L + LG+ P + LL+ T K ++G + +
Sbjct: 612 CNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTYTLLLSCCTDGRSKLDMGFCGQLMA 671
Query: 346 KSNSKLG-YVVKLLLEEQDIEG--DFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLE 402
+ +++K+ D E + +L +S ++ K+ + ++D E
Sbjct: 672 STGHPAHMFLLKMPAAGPDGENVRNHANNFLDLMHSEDRESKRGLVDAVVDFLHKSGQKE 731
Query: 403 NACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEF 461
A + E+ V+ D ++ +S + W ++L +S G A+TAL + K + +
Sbjct: 732 EAGSVWEVAAQKNVFPDALREKSCSYWLINLHVMSEGTAVTALSRTLAWFRKQMLASGTC 791
Query: 462 PPLLGINTGHGKHKY--SDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWL 517
P + I TG G+ + E L +PF G F+ + WL
Sbjct: 792 PSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFGSPFFTESGNSGCFVGSGEPLNRWL 849
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/329 (24%), Positives = 152/329 (46%), Gaps = 11/329 (3%)
Query: 100 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
+N RID + ++K GN G Y + G K + TY ++ +GRAK+
Sbjct: 323 QNLGLRIDAYQANQVLKQMNDYGNALGFF--YWLKRQPGFKHDGHTYTTMVGNLGRAKQF 380
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219
+ + EM +G PN TY L+ +YGRA Y + ++V+ +M+E G + Y TL
Sbjct: 381 GAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTL 440
Query: 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279
+ + A G+ D A ++++ M++ PD++T+S +I G + A +F EM++ G
Sbjct: 441 IDIHAKAGFLDIAMDMYQRMQAG-GLSPDTFTYSVIINCLGKAGHLPAAHKLFCEMVDQG 499
Query: 280 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELG 338
PNL ++ + KA+ + ++ + G PD ++ V+ EE
Sbjct: 500 CTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAE 559
Query: 339 KLVECVEKSN-----SKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 393
+ +++ N G +V L + ++E ++ L + +V CN L+
Sbjct: 560 AVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPT--CNSLLS 617
Query: 394 LCVNLNLLENACKLLELGLTLEVYTDIQS 422
+ +N + A +LL+ L L + +Q+
Sbjct: 618 TFLRVNKIAEAYELLQNMLALGLRPSLQT 646
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 97 TRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 156
T + + W D + L+ L+G AGN + Y+ M G++PN+ T N+LL T R
Sbjct: 563 TEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRV 622
Query: 157 KRPWQVKTIYKEMTDNGLSPNWNTYASLL 185
+ + + + M GL P+ TY LL
Sbjct: 623 NKIAEAYELLQNMLALGLRPSLQTYTLLL 651
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 100 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA--- 156
+N + D +S ++++ G G + V+ EM+ P+ Y L+D G+A
Sbjct: 531 QNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNV 590
Query: 157 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 216
++ WQ Y+ M GL PN T SLL + R + + + M G++ S+ Y
Sbjct: 591 EKAWQ---WYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRPSLQTY 647
Query: 217 NTLLAMCAD 225
LL+ C D
Sbjct: 648 TLLLSCCTD 656
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/422 (23%), Positives = 185/422 (43%), Gaps = 16/422 (3%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D + TLI ++ AG D +++Y+ M+ G+ P+ TY+ +++ +G+A ++
Sbjct: 428 DRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKAGHLPAAHRLF 487
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
EM G +PN T+ ++ + +AR E L +YR+M+ G Q Y+ ++ +
Sbjct: 488 CEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHC 547
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G+ +EA +F +M+ +N PD + ++ + G V +A + ML+AG PN+
Sbjct: 548 GFLEEAEGVFAEMQ-RKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPT 606
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE-ELGKLVECVE 345
SL+ + + R + L + LG+ P + LL+ T ++G + +
Sbjct: 607 CNSLLSTFLRVHRMSEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFDMGFCGQLMA 666
Query: 346 KSNSKLGYVVKLLLEEQDIEG-------DFKKEATELFNSISKDVKKAYCNCLIDLCVNL 398
S G+ + L + G D + +S ++ K+ + ++D
Sbjct: 667 VS----GHPAHMFLLKMPPAGPDGQKVRDHVSNFLDFMHSEDRESKRGLMDAVVDFLHKS 722
Query: 399 NLLENACKLLELGLTLEVYTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALES 457
L E A + E+ VY D ++ +S + W ++L +S G A+ AL + K +
Sbjct: 723 GLKEEAGSVWEVAAGKNVYPDALREKSYSYWLINLHVMSEGTAVIALSRTLAWFRKQMLV 782
Query: 458 GEEFPPLLGINTGHGKHKY--SDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKS 515
+ P + I TG G+ + E L N PF G F+ + K+
Sbjct: 783 SGDCPSRIDIVTGWGRRSRVTGTSMVRQAVEELLNIFNFPFFTENGNSGCFVGSGEPLKN 842
Query: 516 WL 517
WL
Sbjct: 843 WL 844
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%)
Query: 100 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
+ + W D + L+ L+G AGN D Y+ M G++PN+ T N+LL T R R
Sbjct: 561 QRKNWVPDEPVYGLLVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRM 620
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 196
+ + + M GL P+ TY LL AR D
Sbjct: 621 SEAYNLLQSMLALGLHPSLQTYTLLLSCCTDARSNFD 657
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 217 NTLLAMCADVGYTDEAFEI--FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274
+T M ++G + EI D + C+P++ T++ +I + EA +FN+
Sbjct: 360 HTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQ 419
Query: 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 332
M EAG EP+ +LI + KA D + R+ E G++PD ++N + +
Sbjct: 420 MQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCLGKA 477
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 12/144 (8%)
Query: 91 KEKSYDTRAR------NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 144
K ++Y+T + N ++ D +S ++++ G G + V+ EM+ P+
Sbjct: 511 KARNYETALKLYRDMQNAGFQPDKVTYSIVMEVLGHCGFLEEAEGVFAEMQRKNWVPDEP 570
Query: 145 TYNNLLDTMGRA---KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 201
Y L+D G+A + WQ Y+ M GL PN T SLL + R + ++
Sbjct: 571 VYGLLVDLWGKAGNVDKAWQ---WYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLL 627
Query: 202 REMKEKGMQLSVTLYNTLLAMCAD 225
+ M G+ S+ Y LL+ C D
Sbjct: 628 QSMLALGLHPSLQTYTLLLSCCTD 651
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 232 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 291
A F +K + D T+++M+ + E + +EM+ G +PN LI
Sbjct: 342 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLI 401
Query: 292 QCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 326
YG+A + + N++ E G P DR C L
Sbjct: 402 HSYGRANYLKEAMNVFNQMQEAGCEP-DRVTYCTL 435
>sp|Q8RWS8|PP199_ARATH Pentatricopeptide repeat-containing protein At2g41720
OS=Arabidopsis thaliana GN=EMB2654 PE=2 SV=1
Length = 822
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 140/286 (48%), Gaps = 6/286 (2%)
Query: 102 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
+KW P+A + LI +G AG + +N+ ++M + P+ TYNNL++ G +
Sbjct: 170 QKWSCKPDAETYDALINAHGRAGQWRWAMNLMDDMLRAAIAPSRSTYNNLINACGSSGNW 229
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219
+ + K+MTDNG+ P+ T+ +L AY R LS + MK ++ T +N +
Sbjct: 230 REALEVCKKMTDNGVGPDLVTHNIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNII 289
Query: 220 LAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278
+ + +G + +A ++F M+ C+PD TF+S++ + S +G++ A+F M+
Sbjct: 290 IYCLSKLGQSSQALDLFNSMREKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAE 349
Query: 279 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 338
G +PN+ +L+ Y + + L + + GI PD CLLN ++ +
Sbjct: 350 GLKPNIVSYNALMGAYAVHGMSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKA 409
Query: 339 KLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEATELFNSISKD 382
K V + + + VV L++ G F EA E+F + +D
Sbjct: 410 KEVFLMMRKERRKPNVVTYNALIDAYGSNG-FLAEAVEIFRQMEQD 454
Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 113/232 (48%), Gaps = 1/232 (0%)
Query: 100 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
R E+ + + ++ LI YG+ G + ++ +M+ G+KPN+++ LL R+K+
Sbjct: 417 RKERRKPNVVTYNALIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKK 476
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219
V T+ G++ N Y S + +Y A E +++Y+ M++K ++ + L
Sbjct: 477 VNVDTVLSAAQSRGINLNTAAYNSAIGSYINAAELEKAIALYQSMRKKKVKADSVTFTIL 536
Query: 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279
++ + EA ++M+ + +SS++ S +G+V+EAE++FN+M AG
Sbjct: 537 ISGSCRMSKYPEAISYLKEMEDL-SIPLTKEVYSSVLCAYSKQGQVTEAESIFNQMKMAG 595
Query: 280 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 331
EP++ TS++ Y +++ + GI PD C L+ +
Sbjct: 596 CEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSALMRAFNK 647
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 95/207 (45%), Gaps = 1/207 (0%)
Query: 98 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 157
R + + R D F++++ LY G + C V+E M A G+KPN+++YN L+
Sbjct: 310 REKRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHG 369
Query: 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217
++ ++ NG+ P+ +Y LL +YGR+R V+ M+++ + +V YN
Sbjct: 370 MSGTALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYN 429
Query: 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277
L+ G+ EA EIF M+ + +P+ + +++ CS K + + +
Sbjct: 430 ALIDAYGSNGFLAEAVEIFRQME-QDGIKPNVVSVCTLLAACSRSKKKVNVDTVLSAAQS 488
Query: 278 AGFEPNLFVLTSLIQCYGKAQRTDDVV 304
G N S I Y A + +
Sbjct: 489 RGINLNTAAYNSAIGSYINAAELEKAI 515
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 45/226 (19%), Positives = 102/226 (45%), Gaps = 3/226 (1%)
Query: 112 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 171
+ ++ Y + + L+ +E MK V+P+ T+N ++ + + + Q ++ M +
Sbjct: 252 NIVLSAYKSGRQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMRE 311
Query: 172 NGLS--PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 229
P+ T+ S++ Y E+ +V+ M +G++ ++ YN L+ A G +
Sbjct: 312 KRAECRPDVVTFTSIMHLYSVKGEIENCRAVFEAMVAEGLKPNIVSYNALMGAYAVHGMS 371
Query: 230 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 289
A + D+K + PD +++ ++ + +A+ +F M + +PN+ +
Sbjct: 372 GTALSVLGDIKQN-GIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNA 430
Query: 290 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 335
LI YG + V ++ + GI P+ LL +++ K+
Sbjct: 431 LIDAYGSNGFLAEAVEIFRQMEQDGIKPNVVSVCTLLAACSRSKKK 476
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/212 (17%), Positives = 91/212 (42%), Gaps = 1/212 (0%)
Query: 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 169
+S+++ Y G +++ +MK G +P++I Y ++L +++ + ++ EM
Sbjct: 567 VYSSVLCAYSKQGQVTEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEM 626
Query: 170 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 229
NG+ P+ ++L+RA+ + + + M+EK + + ++ + + C +
Sbjct: 627 EANGIEPDSIACSALMRAFNKGGQPSNVFVLMDLMREKEIPFTGAVFFEIFSACNTLQEW 686
Query: 230 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 289
A ++ + M T + M+ + GKV +F +++ +G NL
Sbjct: 687 KRAIDLIQMMDPYLPSLSIGLT-NQMLHLFGKSGKVEAMMKLFYKIIASGVGINLKTYAI 745
Query: 290 LIQCYGKAQRTDDVVRALNRLPELGITPDDRF 321
L++ + L + GI P ++
Sbjct: 746 LLEHLLAVGNWRKYIEVLEWMSGAGIQPSNQM 777
Score = 35.8 bits (81), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/144 (18%), Positives = 60/144 (41%)
Query: 100 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
R +K + D F+ LI + ++ +EM+ + + Y+++L + +
Sbjct: 522 RKKKVKADSVTFTILISGSCRMSKYPEAISYLKEMEDLSIPLTKEVYSSVLCAYSKQGQV 581
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219
+ ++I+ +M G P+ Y S+L AY + ++ EM+ G++ + L
Sbjct: 582 TEAESIFNQMKMAGCEPDVIAYTSMLHAYNASEKWGKACELFLEMEANGIEPDSIACSAL 641
Query: 220 LAMCADVGYTDEAFEIFEDMKSSE 243
+ G F + + M+ E
Sbjct: 642 MRAFNKGGQPSNVFVLMDLMREKE 665
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 120 bits (300), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 3/215 (1%)
Query: 106 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
I P+A++ TLI V+EEMKA G + +TYN LLD G++ RP +
Sbjct: 275 IAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAM 334
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
+ EM NG SP+ TY SL+ AY R ++ + + +M EKG + V Y TLL+
Sbjct: 335 KVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGF 394
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283
G + A IFE+M+++ C+P+ TF++ I + RGK +E +F+E+ G P+
Sbjct: 395 ERAGKVESAMSIFEEMRNA-GCKPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPD 453
Query: 284 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+ +L+ +G+ +V + G P+
Sbjct: 454 IVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 488
Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 130/285 (45%), Gaps = 39/285 (13%)
Query: 71 GSSPKSYIWVNPKS--PRASKLKEK-SYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGC 127
G+ P + + S RA K++ S RN + + F+ IK+YG G F
Sbjct: 379 GTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEM 438
Query: 128 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187
+ +++E+ G+ P+++T+N LL G+ +V ++KEM G P T+ +L+ A
Sbjct: 439 MKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISA 498
Query: 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 247
Y R E ++VYR M + G+ ++ YNT+LA A G +++ ++ +M+ C+P
Sbjct: 499 YSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGR-CKP 557
Query: 248 DSWTFSS-----------------------------------MITICSCRGKVSEAEAMF 272
+ T+ S ++ +CS + EAE F
Sbjct: 558 NELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTLVLVCSKCDLLPEAERAF 617
Query: 273 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 317
+E+ E GF P++ L S++ YG+ Q L+ + E G TP
Sbjct: 618 SELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTP 662
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 125/245 (51%), Gaps = 5/245 (2%)
Query: 111 FSTLIKLYGTAGN-FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 169
++ ++ ++G G ++ ++ E+MK+ G+ P+ TYN L+ R + +++EM
Sbjct: 246 YNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEM 305
Query: 170 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 229
G S + TY +LL YG++ ++ + V EM G S+ YN+L++ A G
Sbjct: 306 KAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGML 365
Query: 230 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 289
DEA E+ M + + +PD +T++++++ GKV A ++F EM AG +PN+ +
Sbjct: 366 DEAMELKNQM-AEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNA 424
Query: 290 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNS 349
I+ YG + ++++ + + G++PD LL V Q + V V K
Sbjct: 425 FIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQN---GMDSEVSGVFKEMK 481
Query: 350 KLGYV 354
+ G+V
Sbjct: 482 RAGFV 486
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 90/170 (52%), Gaps = 2/170 (1%)
Query: 149 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 208
++ +G+ R ++ + ++G S + +Y SL+ A+ + + ++V+++M+E G
Sbjct: 179 IISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDG 238
Query: 209 MQLSVTLYNTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 267
+ ++ YN +L + +G ++ + E MKS + PD++T++++IT C E
Sbjct: 239 CKPTLITYNVILNVFGKMGTPWNKITSLVEKMKS-DGIAPDAYTYNTLITCCKRGSLHQE 297
Query: 268 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 317
A +F EM AGF + +L+ YGK+ R + ++ LN + G +P
Sbjct: 298 AAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSP 347
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 11/176 (6%)
Query: 82 PKSPRA-SKLKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK 140
P++ RA S+LKE+ + D ++++ +YG V + MK G
Sbjct: 611 PEAERAFSELKERGFSP---------DITTLNSMVSIYGRRQMVAKANGVLDYMKERGFT 661
Query: 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 200
P+M TYN+L+ R+ + + I +E+ G+ P+ +Y +++ AY R D +
Sbjct: 662 PSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRI 721
Query: 201 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 256
+ EM+ G+ V YNT + A +EA + M C+P+ T++S++
Sbjct: 722 FSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYM-IKHGCRPNQNTYNSIV 776
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 103/233 (44%), Gaps = 11/233 (4%)
Query: 92 EKSYDTRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 149
E+S A E R PN + +L+ Y ++ EE+ + ++P + L
Sbjct: 541 EQSEKVLAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEVYSGVIEPRAVLLKTL 600
Query: 150 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 209
+ + + + + E+ + G SP+ T S++ YGR + V MKE+G
Sbjct: 601 VLVCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGF 660
Query: 210 QLSVTLYNTLLAM---CADVGYTDEAF-EIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265
S+ YN+L+ M AD G ++E EI ++ +PD +++++I ++
Sbjct: 661 TPSMATYNSLMYMHSRSADFGKSEEILREIL-----AKGIKPDIISYNTVIYAYCRNTRM 715
Query: 266 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+A +F+EM +G P++ + I Y ++ + + + + G P+
Sbjct: 716 RDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPN 768
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 70/137 (51%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
+++L+ ++ + +F + E+ A G+KP++I+YN ++ R R I+ EM
Sbjct: 667 YNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIFSEMR 726
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
++G+ P+ TY + + +Y E+ + V R M + G + + YN+++ + D
Sbjct: 727 NSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKLNRKD 786
Query: 231 EAFEIFEDMKSSENCQP 247
EA ED+++ + P
Sbjct: 787 EAKLFVEDLRNLDPHAP 803
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 88/198 (44%), Gaps = 15/198 (7%)
Query: 153 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL-SVYREMKEKGMQL 211
+G+++ P + K + +GLSP +LR+ + L SV E+ E
Sbjct: 78 IGKSRDP----NLGKPWSYHGLSPQGQ---QVLRSLIEPNFDSGQLDSVLSELFEPFKDK 130
Query: 212 SVTLYNTLLAMCADVGYT---DEAFEIFEDMKSSENCQP--DSWTFSSMITICSCRGKVS 266
+ + LLA +G+ D A F+ ++ Q D+ + +I++ G+VS
Sbjct: 131 PESTSSELLAFLKGLGFHKKFDLALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVS 190
Query: 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 326
A MFN + E GF +++ TSLI + + R + V ++ E G P +L
Sbjct: 191 SAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVIL 250
Query: 327 NVMTQ--TPKEELGKLVE 342
NV + TP ++ LVE
Sbjct: 251 NVFGKMGTPWNKITSLVE 268
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 124/244 (50%), Gaps = 4/244 (1%)
Query: 86 RASKLKEKSYDTRARNEK-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 144
R ++KE S+ N + + +D ++TLIK Y GNF L ++ EM G+ P++I
Sbjct: 287 REGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVI 346
Query: 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 204
TY +L+ +M +A + +M GL PN TY +L+ + + Y + V REM
Sbjct: 347 TYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM 406
Query: 205 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG- 263
+ G SV YN L+ G ++A + EDMK + PD ++S++++ CR
Sbjct: 407 NDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMK-EKGLSPDVVSYSTVLS-GFCRSY 464
Query: 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 323
V EA + EM+E G +P+ +SLIQ + + +RT + + +G+ PD+
Sbjct: 465 DVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYT 524
Query: 324 CLLN 327
L+N
Sbjct: 525 ALIN 528
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/352 (23%), Positives = 145/352 (41%), Gaps = 67/352 (19%)
Query: 4 NLCYSTCSLFSTPKLGRRTFTFSFQRDDSLSFYSKTSLQKRSVSLQETQSSNPTKHSQNP 63
+LCYST S+F D + YS+ SL +++S+ + H P
Sbjct: 128 DLCYSTSSVF----------------DLVVKSYSRLSLIDKALSIVHLAQA----HGFMP 167
Query: 64 QYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRARNEKWRIDPNAFS--TLIKLYGTA 121
S + + +S R E + ++ + PN F+ LI+ + A
Sbjct: 168 GVL------SYNAVLDATIRSKRNISFAENVFKEMLESQ---VSPNVFTYNILIRGFCFA 218
Query: 122 GNFDGCLNVYEEMKAIGVKPNMITYNNLLD------------------------------ 151
GN D L ++++M+ G PN++TYN L+D
Sbjct: 219 GNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISY 278
Query: 152 -----TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 206
+ R R +V + EM G S + TY +L++ Y + L ++ EM
Sbjct: 279 NVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR 338
Query: 207 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266
G+ SV Y +L+ G + A E + M+ C P+ T+++++ S +G ++
Sbjct: 339 HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC-PNERTYTTLVDGFSQKGYMN 397
Query: 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
EA + EM + GF P++ +LI + + +D + L + E G++PD
Sbjct: 398 EAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPD 449
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 113/261 (43%), Gaps = 56/261 (21%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ST++ + + + D L V EM G+KP+ ITY++L+ +R + +Y
Sbjct: 449 DVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLY 508
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV------------- 213
+EM GL P+ TY +L+ AY E L ++ EM EKG+ V
Sbjct: 509 EEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQ 568
Query: 214 ----------------------TLYNTLLAMCADV---------------GYTDEAFEIF 236
Y+TL+ C+++ G EA ++F
Sbjct: 569 SRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVF 628
Query: 237 EDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY- 294
E M +N +PD ++ MI CR G + +A ++ EM+++GF + + +L++
Sbjct: 629 ESM-LGKNHKPDGTAYNIMIH-GHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALH 686
Query: 295 --GKAQRTDDVVRALNRLPEL 313
GK + V+ + R EL
Sbjct: 687 KEGKVNELNSVIVHVLRSCEL 707
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 108/261 (41%), Gaps = 55/261 (21%)
Query: 69 KTGSSPKSYIWVNPKSPRASKLKEKSYDTRA--------RNEKWRI----DPNAFS---- 112
K G+ ++ +++ R E++Y T NE +R+ + N FS
Sbjct: 357 KAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVV 416
Query: 113 ---TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 169
LI + G + + V E+MK G+ P++++Y+ +L R+ + + +EM
Sbjct: 417 TYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Query: 170 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 229
+ G+ P+ TY+SL++ + R ++ +Y EM G+
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGL-------------------- 516
Query: 230 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 289
PD +T++++I G + +A + NEM+E G P++ +
Sbjct: 517 ----------------PPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSV 560
Query: 290 LIQCYGKAQRTDDVVRALNRL 310
LI K RT + R L +L
Sbjct: 561 LINGLNKQSRTREAKRLLLKL 581
>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040
OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2
Length = 583
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 114/221 (51%), Gaps = 4/221 (1%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D + +I +Y AGN++ V+ M GV + +TYN+L+ K +V IY
Sbjct: 246 DQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLMSFETSYK---EVSKIY 302
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+M + + P+ +YA L++AYGRAR E+ LSV+ EM + G++ + YN LL A
Sbjct: 303 DQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAIS 362
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G ++A +F+ M+ + PD W++++M++ + AE F + GFEPN+
Sbjct: 363 GMVEQAKTVFKSMRR-DRIFPDLWSYTTMLSAYVNASDMEGAEKFFKRIKVDGFEPNIVT 421
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 327
+LI+ Y KA + ++ ++ GI + +++
Sbjct: 422 YGTLIKGYAKANDVEKMMEVYEKMRLSGIKANQTILTTIMD 462
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 115/241 (47%), Gaps = 7/241 (2%)
Query: 104 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
W F LI YG GNF+G V + +G PN+I+Y L+++ GR + +
Sbjct: 135 WNFSEIDFLMLITAYGKLGNFNGAERVLSVLSKMGSTPNVISYTALMESYGRGGKCNNAE 194
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAY---GRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220
I++ M +G P+ TY +L+ + + + E+ + K+ ++ +Y+ ++
Sbjct: 195 AIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVFETLLDEKKSPLKPDQKMYHMMI 254
Query: 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280
M G ++A ++F M + + T++S+++ + +VS+ ++++M +
Sbjct: 255 YMYKKAGNYEKARKVFSSM-VGKGVPQSTVTYNSLMSFETSYKEVSK---IYDQMQRSDI 310
Query: 281 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 340
+P++ LI+ YG+A+R ++ + + + G+ P + LL+ + E K
Sbjct: 311 QPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKT 370
Query: 341 V 341
V
Sbjct: 371 V 371
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 124/297 (41%), Gaps = 45/297 (15%)
Query: 74 PKSYIWVNPKSPRASKLKE--KSYDTRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLN 129
P+S + N + KE K YD R++ I P+ +++ LIK YG A + L+
Sbjct: 279 PQSTVTYNSLMSFETSYKEVSKIYDQMQRSD---IQPDVVSYALLIKAYGRARREEEALS 335
Query: 130 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 189
V+EEM GV+P YN LLD + Q KT++K M + + P+ +Y ++L AY
Sbjct: 336 VFEEMLDAGVRPTHKAYNILLDAFAISGMVEQAKTVFKSMRRDRIFPDLWSYTTMLSAYV 395
Query: 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 249
A E ++ +K G + ++ Y TL+ A ++ E++E M+ S
Sbjct: 396 NASDMEGAEKFFKRIKVDGFEPNIVTYGTLIKGYAKANDVEKMMEVYEKMRLS------- 448
Query: 250 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 309
G + N +LT+++ G+ + +
Sbjct: 449 -----------------------------GIKANQTILTTIMDASGRCKNFGSALGWYKE 479
Query: 310 LPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 366
+ G+ PD + LL++ + ++EL + E N + ++ + D EG
Sbjct: 480 MESCGVPPDQKAKNVLLSL--ASTQDELEEAKELTGIRNETATIIARVYGSDDDEEG 534
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 125/249 (50%), Gaps = 4/249 (1%)
Query: 102 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 161
+++ +D A++T++ Y G ++ ++++E MK +G P ++TYN +LD G+ R W+
Sbjct: 204 QEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILDVFGKMGRSWR 263
Query: 162 -VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220
+ + EM GL + T +++L A R + + E+K G + YN LL
Sbjct: 264 KILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALL 323
Query: 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280
+ G EA + ++M+ + +C DS T++ ++ G EA + M + G
Sbjct: 324 QVFGKAGVYTEALSVLKEMEEN-SCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGV 382
Query: 281 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE-ELGK 339
PN T++I YGKA + D+ ++ + E G P+ +L+++ + + E+ K
Sbjct: 383 MPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIK 442
Query: 340 LVECVEKSN 348
++ C KSN
Sbjct: 443 ML-CDMKSN 450
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 1/221 (0%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
++ L++++G AG + L+V +EM+ + +TYN L+ RA + + + MT
Sbjct: 319 YNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMT 378
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
G+ PN TY +++ AYG+A ++ L ++ MKE G + YN +L++ ++
Sbjct: 379 KKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSN 438
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 290
E ++ DMKS+ C P+ T+++M+ +C +G +F EM GFEP+ +L
Sbjct: 439 EMIKMLCDMKSN-GCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTL 497
Query: 291 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 331
I YG+ D + + G LLN + +
Sbjct: 498 ISAYGRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALAR 538
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 106/263 (40%), Gaps = 38/263 (14%)
Query: 106 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP---- 159
+ PNA ++T+I YG AG D L ++ MK G PN TYN +L +G+ R
Sbjct: 382 VMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMI 441
Query: 160 -----------------WQ--------------VKTIYKEMTDNGLSPNWNTYASLLRAY 188
W V +++EM G P+ +T+ +L+ AY
Sbjct: 442 KMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAY 501
Query: 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 248
GR D +Y EM G VT YN LL A G + DMK S+ +P
Sbjct: 502 GRCGSEVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRSGENVISDMK-SKGFKPT 560
Query: 249 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 308
++S M+ + G E + N + E P+ +L +L+ K + RA
Sbjct: 561 ETSYSLMLQCYAKGGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFT 620
Query: 309 RLPELGITPDDRFCGCLLNVMTQ 331
+ G PD +L++ T+
Sbjct: 621 LFKKHGYKPDMVIFNSMLSIFTR 643
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 97/184 (52%), Gaps = 4/184 (2%)
Query: 86 RASKLKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT 145
RA E+++ T + ++ D F++++ ++ +D + E ++ G+ P+++T
Sbjct: 610 RALAGSERAF-TLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVT 668
Query: 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 205
YN+L+D R W+ + I K + + L P+ +Y ++++ + R ++ + + EM
Sbjct: 669 YNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMT 728
Query: 206 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GK 264
E+G++ + YNT ++ +G E ++ E M + +C+P+ TF M+ CR GK
Sbjct: 729 ERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECM-AKNDCRPNELTF-KMVVDGYCRAGK 786
Query: 265 VSEA 268
SEA
Sbjct: 787 YSEA 790
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 21/252 (8%)
Query: 71 GSSPKSYIWVNPKSPRASKLKEKSYDTRARNEK---WRIDPNAFSTLIKLYGTAGNFDGC 127
G SP W + +K +K + R K + D + F+TLI YG G+
Sbjct: 451 GCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGSEVDA 510
Query: 128 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV-KTIYKEMTDNGLSPNWNTYASLLR 186
+Y EM G + TYN LL+ + R K W+ + + +M G P +Y+ +L+
Sbjct: 511 SKMYGEMTRAGFNACVTTYNALLNALAR-KGDWRSGENVISDMKSKGFKPTETSYSLMLQ 569
Query: 187 AYGRARYGEDTLSVYR---EMKEKGMQLSVTLYNTLLAM---CADVGYTDEAFEIFEDMK 240
Y + G + L + R +KE + S L TLL C + ++ AF +F+
Sbjct: 570 CYAK---GGNYLGIERIENRIKEGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFK--- 623
Query: 241 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY---GKA 297
+PD F+SM++I + +AE + + E G P+L SL+ Y G+
Sbjct: 624 -KHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGEC 682
Query: 298 QRTDDVVRALNR 309
+ +++++ L +
Sbjct: 683 WKAEEILKTLEK 694
Score = 69.3 bits (168), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/247 (20%), Positives = 113/247 (45%), Gaps = 14/247 (5%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
++ L+ G++ NV +MK+ G KP +Y+ +L + ++ I +
Sbjct: 529 YNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIENRIK 588
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
+ + P+W +LL A + R + + K+ G + + ++N++L++ D
Sbjct: 589 EGQIFPSWMLLRTLLLANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYD 648
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 290
+A I E ++ + PD T++S++ + RG+ +AE + + ++ +P+L ++
Sbjct: 649 QAEGILESIRE-DGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTV 707
Query: 291 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-------EELGKLVEC 343
I+ + + + VR L+ + E GI P C+ T E+ ++EC
Sbjct: 708 IKGFCRRGLMQEAVRMLSEMTERGIRP------CIFTYNTFVSGYTAMGMFAEIEDVIEC 761
Query: 344 VEKSNSK 350
+ K++ +
Sbjct: 762 MAKNDCR 768
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 88/195 (45%), Gaps = 1/195 (0%)
Query: 126 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185
G + K G KP+M+ +N++L R Q + I + + ++GLSP+ TY SL+
Sbjct: 614 GSERAFTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLM 673
Query: 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 245
Y R + + +++ ++ + YNT++ G EA + +M +
Sbjct: 674 DMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEM-TERGI 732
Query: 246 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 305
+P +T+++ ++ + G +E E + M + PN ++ Y +A + + +
Sbjct: 733 RPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMD 792
Query: 306 ALNRLPELGITPDDR 320
++++ DD+
Sbjct: 793 FVSKIKTFDPCFDDQ 807
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 111/220 (50%), Gaps = 2/220 (0%)
Query: 99 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 158
RN + P S L+K G A L+V+ + K KP TYN+++ + + +
Sbjct: 153 VRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQ 212
Query: 159 PWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217
+V +Y EM + G P+ TY++L+ +Y + + + ++ EMK+ MQ + +Y
Sbjct: 213 HEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYT 272
Query: 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277
TLL + VG ++A ++FE+MK + C P +T++ +I G+V EA + +ML
Sbjct: 273 TLLGIYFKVGKVEKALDLFEEMKRA-GCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLR 331
Query: 278 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 317
G P++ L +L+ GK R +++ + + TP
Sbjct: 332 DGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCTP 371
Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 102/231 (44%), Gaps = 2/231 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D +S LI Y G D + +++EMK ++P Y LL + + + ++
Sbjct: 232 DTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLF 291
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+EM G SP TY L++ G+A ++ Y++M G+ V N L+ + V
Sbjct: 292 EEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKV 351
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLF 285
G +E +F +M C P +++++I + + VSE + F++M P+ F
Sbjct: 352 GRVEELTNVFSEM-GMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEF 410
Query: 286 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 336
+ LI Y K R + + L + E G P L+N + + + E
Sbjct: 411 TYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYE 461
Score = 83.6 bits (205), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 115/243 (47%), Gaps = 9/243 (3%)
Query: 99 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM---KAIGVKPNMITYNNLLDTMGR 155
+ ++ D + + TLI+ A + +E+ + V P +++ L+ +GR
Sbjct: 117 GKRRNFQHDCSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLS--ELVKALGR 174
Query: 156 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL 215
AK + +++ + P +TY S++ + E VY EM +G T+
Sbjct: 175 AKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTI 234
Query: 216 -YNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFN 273
Y+ L++ +G D A +F++MK +NC QP +++++ I GKV +A +F
Sbjct: 235 TYSALISSYEKLGRNDSAIRLFDEMK--DNCMQPTEKIYTTLLGIYFKVGKVEKALDLFE 292
Query: 274 EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 333
EM AG P ++ T LI+ GKA R D+ + G+TPD F L+N++ +
Sbjct: 293 EMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVG 352
Query: 334 KEE 336
+ E
Sbjct: 353 RVE 355
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 92/200 (46%), Gaps = 1/200 (0%)
Query: 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 167
P A+ +LI G A ++ +++E+K + Y ++ G+ + + ++
Sbjct: 444 PAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFN 503
Query: 168 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227
EM + G P+ Y +L+ +A + S+ R+M+E G + + +N +L A G
Sbjct: 504 EMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTG 563
Query: 228 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 287
A E+FE +K S +PD T+++++ + G EA M EM + GFE +
Sbjct: 564 VPRRAIEMFETIKHS-GIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITY 622
Query: 288 TSLIQCYGKAQRTDDVVRAL 307
+S++ G D V +
Sbjct: 623 SSILDAVGNVDHEKDDVSSF 642
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 99/215 (46%), Gaps = 3/215 (1%)
Query: 106 IDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
+ P+ F S LI Y + L + EEM G P Y +L++ +G+AKR
Sbjct: 405 VSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAAN 464
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
++KE+ +N + + YA +++ +G+ + + ++ EMK +G V YN L++
Sbjct: 465 ELFKELKENFGNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGM 524
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283
G +EA + M+ + C+ D + + ++ + G A MF + +G +P+
Sbjct: 525 VKAGMINEANSLLRKMEEN-GCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPD 583
Query: 284 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+L+ C+ A ++ R + + + G D
Sbjct: 584 GVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYD 618
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 112/243 (46%), Gaps = 5/243 (2%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEM 169
+ L+ + G G + NV+ EM P +++YN ++ + +K +V + + +M
Sbjct: 341 LNNLMNILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKM 400
Query: 170 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 229
+ +SP+ TY+ L+ Y + E L + EM EKG Y +L+
Sbjct: 401 KADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRY 460
Query: 230 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 289
+ A E+F+++K + S ++ MI GK+SEA +FNEM G P+++ +
Sbjct: 461 EAANELFKELKENFG-NVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNA 519
Query: 290 LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT--PKEELGKLVECVEKS 347
L+ KA ++ L ++ E G D +LN +T P+ + ++ E ++ S
Sbjct: 520 LMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRAI-EMFETIKHS 578
Query: 348 NSK 350
K
Sbjct: 579 GIK 581
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 76/151 (50%), Gaps = 1/151 (0%)
Query: 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 165
+ ++ +IK +G G ++++ EMK G P++ YN L+ M +A + ++
Sbjct: 477 VSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSL 536
Query: 166 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225
++M +NG + N++ +L + R + ++ +K G++ YNTLL A
Sbjct: 537 LRKMEENGCRADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAH 596
Query: 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 256
G +EA + +MK + + D+ T+SS++
Sbjct: 597 AGMFEEAARMMREMK-DKGFEYDAITYSSIL 626
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
Query: 71 GSSPKSYIW--VNPKSPRASKLKEKSYDTRARNEKW-RIDPNAFSTLIKLYGTAGNFDGC 127
GS P Y + + +A + E + R E R D N+ + ++ + G
Sbjct: 509 GSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFARTGVPRRA 568
Query: 128 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187
+ ++E +K G+KP+ +TYN LL A + + +EM D G + TY+S+L A
Sbjct: 569 IEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMMREMKDKGFEYDAITYSSILDA 628
Query: 188 YGRARYGEDTLSVY 201
G + +D +S +
Sbjct: 629 VGNVDHEKDDVSSF 642
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 110/222 (49%), Gaps = 2/222 (0%)
Query: 98 RARNEKWRIDPNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 156
R +NEK ++T+I G +++G L ++ EM+ G++P+++TYN LL
Sbjct: 201 RMKNEKISPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIR 260
Query: 157 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 216
+ + +++ M D G+ P+ TY+ L+ +G+ R E + EM G +T Y
Sbjct: 261 GLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSY 320
Query: 217 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276
N LL A G EA +F M+++ C P++ T+S ++ + G+ + +F EM
Sbjct: 321 NVLLEAYAKSGSIKEAMGVFHQMQAA-GCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMK 379
Query: 277 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+ +P+ LI+ +G+ +VV + + E I PD
Sbjct: 380 SSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPD 421
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/413 (22%), Positives = 174/413 (42%), Gaps = 54/413 (13%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
+ N +S L+ L+G +G +D ++ EMK+ P+ TYN L++ G +V T++
Sbjct: 351 NANTYSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLF 410
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+M + + P+ TY ++ A G+ ED + + M + S Y ++
Sbjct: 411 HDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFGQA 470
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
+EA F M P TF S++ + G V E+EA+ + ++++G N
Sbjct: 471 ALYEEALVAFNTMHEV-GSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSGIPRNRDT 529
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV-ECVE 345
+ I+ Y + + ++ V+ + + PD+R +L+V + +LV EC E
Sbjct: 530 FNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYS------FARLVDECRE 583
Query: 346 KSN---------SKLGYVVKL--------------LLEE--------------QDIEGDF 368
+ S + Y + L LLEE Q I+GD+
Sbjct: 584 QFEEMKASDILPSIMCYCMMLAVYGKTERWDDVNELLEEMLSNRVSNIHQVIGQMIKGDY 643
Query: 369 KKEAT--------ELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 420
++ + NS + + N L+D L E A ++L ++ ++
Sbjct: 644 DDDSNWQIVEYVLDKLNSEGCGLGIRFYNALLDALWWLGQKERAARVLNEATKRGLFPEL 703
Query: 421 QSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGK 473
++ WS+ + +S G TAL +W+ND++ L G + P L + + G+
Sbjct: 704 FRKNKLVWSVDVHRMSEGGMYTALSVWLNDINDMLLKG-DLPQLAVVVSVRGQ 755
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/301 (27%), Positives = 142/301 (47%), Gaps = 13/301 (4%)
Query: 103 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQ 161
K ++ N F+ + K + G++ L +++ M + I KPN Y ++ +GR +
Sbjct: 100 KNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDK 159
Query: 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221
++ EM G+S + +Y +L+ AYGR E +L + MK + + S+ YNT++
Sbjct: 160 CLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPSILTYNTVIN 219
Query: 222 MCADVGYTDEA-FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280
CA G E +F +M+ E QPD T++++++ C+ RG EAE +F M + G
Sbjct: 220 ACARGGLDWEGLLGLFAEMR-HEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMNDGGI 278
Query: 281 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP--KEELG 338
P+L + L++ +GK +R + V L + G PD LL ++ KE +G
Sbjct: 279 VPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMG 338
Query: 339 -----KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLID 393
+ C +N+ Y V L L Q D ++ S + D A N LI+
Sbjct: 339 VFHQMQAAGCTPNANT---YSVLLNLFGQSGRYDDVRQLFLEMKSSNTDPDAATYNILIE 395
Query: 394 L 394
+
Sbjct: 396 V 396
Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 107/214 (50%), Gaps = 2/214 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D +++ L++ Y +G+ + V+ +M+A G PN TY+ LL+ G++ R V+ ++
Sbjct: 316 DITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLF 375
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
EM + P+ TY L+ +G Y ++ ++++ +M E+ ++ + Y ++ C
Sbjct: 376 LEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKG 435
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G ++A +I + M ++ + P S ++ +I EA FN M E G P++
Sbjct: 436 GLHEDARKILQYM-TANDIVPSSKAYTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIET 494
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320
SL+ + + + L+RL + GI P +R
Sbjct: 495 FHSLLYSFARGGLVKESEAILSRLVDSGI-PRNR 527
>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980,
chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2
SV=1
Length = 678
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 116/227 (51%), Gaps = 7/227 (3%)
Query: 103 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 160
K I+PN +++T++++YG A F ++++ M+ ++ N++TYN ++ G+
Sbjct: 358 KMDIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVTYNTMIKIYGKTMEHE 417
Query: 161 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220
+ + +EM G+ PN TY++++ +G+A + +++++++ G+++ LY T++
Sbjct: 418 KATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDRAATLFQKLRSSGVEIDQVLYQTMI 477
Query: 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280
VG A + ++K PD+ + ITI + G+ EA +F + E+G
Sbjct: 478 VAYERVGLMGHAKRLLHELK-----LPDNIPRETAITILAKAGRTEEATWVFRQAFESGE 532
Query: 281 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 327
++ V +I Y + QR +V+ ++ G PD +LN
Sbjct: 533 VKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLN 579
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 105/212 (49%), Gaps = 1/212 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D +S LI+L ++ ++++ +K G+ P+++ YN++++ G+AK + + +
Sbjct: 224 DLVLYSNLIELSRRLCDYSKAISIFSRLKRSGITPDLVAYNSMINVYGKAKLFREARLLI 283
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
KEM + G+ PN +Y++LL Y + LSV+ EMKE L +T N ++ + +
Sbjct: 284 KEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAEMKEVNCALDLTTCNIMIDVYGQL 343
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
EA +F ++ + +P+ ++++++ + EA +F M E N+
Sbjct: 344 DMVKEADRLFWSLRKM-DIEPNVVSYNTILRVYGEAELFGEAIHLFRLMQRKDIEQNVVT 402
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
++I+ YGK + + + GI P+
Sbjct: 403 YNTMIKIYGKTMEHEKATNLVQEMQSRGIEPN 434
Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 101/192 (52%), Gaps = 1/192 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D +STLI +G G FD L+ ++M+ V +++ Y+NL++ R + +I+
Sbjct: 189 DRYTYSTLITSFGKEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIF 248
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+ +G++P+ Y S++ YG+A+ + + +EM E G+ + Y+TLL++ +
Sbjct: 249 SRLKRSGITPDLVAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVEN 308
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
EA +F +MK NC D T + MI + V EA+ +F + + EPN+
Sbjct: 309 HKFLEALSVFAEMKEV-NCALDLTTCNIMIDVYGQLDMVKEADRLFWSLRKMDIEPNVVS 367
Query: 287 LTSLIQCYGKAQ 298
++++ YG+A+
Sbjct: 368 YNTILRVYGEAE 379
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 96/202 (47%), Gaps = 4/202 (1%)
Query: 130 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 189
V+EE K P++ YN +L + RAK+ ++ EM L+P+ TY++L+ ++G
Sbjct: 145 VHEEAK---YTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFG 201
Query: 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 249
+ + LS ++M++ + + LY+ L+ + + +A IF +K S PD
Sbjct: 202 KEGMFDSALSWLQKMEQDRVSGDLVLYSNLIELSRRLCDYSKAISIFSRLKRS-GITPDL 260
Query: 250 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 309
++SMI + EA + EM EAG PN ++L+ Y + + + +
Sbjct: 261 VAYNSMINVYGKAKLFREARLLIKEMNEAGVLPNTVSYSTLLSVYVENHKFLEALSVFAE 320
Query: 310 LPELGITPDDRFCGCLLNVMTQ 331
+ E+ D C +++V Q
Sbjct: 321 MKEVNCALDLTTCNIMIDVYGQ 342
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 90/209 (43%), Gaps = 48/209 (22%)
Query: 113 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 172
T I + AG + V+ + G ++ + +++ R +R V ++++M
Sbjct: 506 TAITILAKAGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTA 565
Query: 173 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 232
G P+ N A +L AYG+ R E +VYREM+E+G C
Sbjct: 566 GYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEG--------------C--------- 602
Query: 233 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL------FV 286
+F PD F M+++ S + E++F + LE+ +PN+ V
Sbjct: 603 --VF----------PDEVHF-QMLSLYSSKKDFEMVESLF-QRLES--DPNVNSKELHLV 646
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGI 315
+ +L Y +A + +D R +NR+ E GI
Sbjct: 647 VAAL---YERADKLNDASRVMNRMRERGI 672
Score = 38.5 bits (88), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 33/67 (49%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D + F +I LY + + V+E+M+ G P+ +L+ G+ + + T+Y
Sbjct: 535 DISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVY 594
Query: 167 KEMTDNG 173
+EM + G
Sbjct: 595 REMQEEG 601
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/211 (30%), Positives = 102/211 (48%), Gaps = 1/211 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D F+ L+ AGNF + + M+ G+ PN+ TYN L+ + R R ++
Sbjct: 362 DVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELF 421
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
M G+ P TY + YG++ L + +MK KG+ ++ N L A
Sbjct: 422 GNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKA 481
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G EA +IF +K PDS T++ M+ S G++ EA + +EM+E G EP++ V
Sbjct: 482 GRDREAKQIFYGLKDI-GLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIV 540
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 317
+ SLI KA R D+ + R+ E+ + P
Sbjct: 541 VNSLINTLYKADRVDEAWKMFMRMKEMKLKP 571
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 108/219 (49%), Gaps = 3/219 (1%)
Query: 102 EKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
E + P A++ I YG +G+ L +E+MK G+ PN++ N L ++ +A R
Sbjct: 425 ESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRD 484
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219
+ K I+ + D GL P+ TY +++ Y + ++ + + EM E G + V + N+L
Sbjct: 485 REAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSL 544
Query: 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279
+ DEA+++F MK + +P T+++++ GK+ EA +F M++ G
Sbjct: 545 INTLYKADRVDEAWKMFMRMKEMK-LKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKG 603
Query: 280 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
PN +L C K ++ L ++ ++G PD
Sbjct: 604 CPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 642
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 93/189 (49%)
Query: 130 VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 189
++E M G +PN YN L++ G+A ++K M G+ P+ TY+ L+
Sbjct: 913 LFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLC 972
Query: 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 249
++ L ++E+KE G+ V YN ++ +EA +F +MK+S PD
Sbjct: 973 MVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDL 1032
Query: 250 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 309
+T++S+I G V EA ++NE+ AG EPN+F +LI+ Y + + +
Sbjct: 1033 YTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQT 1092
Query: 310 LPELGITPD 318
+ G +P+
Sbjct: 1093 MVTGGFSPN 1101
Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 106/217 (48%), Gaps = 1/217 (0%)
Query: 123 NFDGCLNVYEEM-KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181
N G ++E+ K +GV+P + TYN L+ + A + ++ ++ G P+ TY
Sbjct: 764 NVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATY 823
Query: 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241
LL AYG++ ++ +Y+EM + + +N +++ G D+A +++ D+ S
Sbjct: 824 NFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMS 883
Query: 242 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301
+ P + T+ +I S G++ EA+ +F ML+ G PN + LI +GKA D
Sbjct: 884 DRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEAD 943
Query: 302 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 338
R+ + G+ PD + L++ + + + G
Sbjct: 944 AACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEG 980
Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 112/238 (47%), Gaps = 10/238 (4%)
Query: 86 RASKLKEKSYDTRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 143
RA K+ E +Y+ R + P+ ++ LI TA D V+E+MK KP+
Sbjct: 270 RAGKINE-AYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDR 328
Query: 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA-RYGE--DTLSV 200
+TY LLD + VK + EM +G P+ T+ L+ A +A +GE DTL V
Sbjct: 329 VTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDV 388
Query: 201 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 260
M+++G+ ++ YNTL+ V D+A E+F +M+S +P ++T+ I
Sbjct: 389 ---MRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESL-GVKPTAYTYIVFIDYYG 444
Query: 261 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
G A F +M G PN+ + + KA R + + L ++G+ PD
Sbjct: 445 KSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPD 502
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 112/243 (46%), Gaps = 9/243 (3%)
Query: 90 LKEKSYDTRARNE-KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNN 148
LK+ Y R E + ++ +++ LI L + + VY M G +P++ TY++
Sbjct: 169 LKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSS 228
Query: 149 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 208
L+ +G+ + V + KEM GL PN T+ +R GRA + + + M ++G
Sbjct: 229 LMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEG 288
Query: 209 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268
V Y L+ D A E+FE MK+ + +PD T+ +++ S +
Sbjct: 289 CGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRH-KPDRVTYITLLDRFSDNRDLDSV 347
Query: 269 EAMFNEMLEAGFEPNLFVLTSLIQC------YGKAQRTDDVVRALNRLPELGITPDDRFC 322
+ ++EM + G P++ T L+ +G+A T DV+R LP L T + C
Sbjct: 348 KQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLH-TYNTLIC 406
Query: 323 GCL 325
G L
Sbjct: 407 GLL 409
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 109/233 (46%), Gaps = 4/233 (1%)
Query: 88 SKLKEKSYDTRARNEKW-RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 146
KL+E +Y ++ + D N + T+ K G +M+ G N +Y
Sbjct: 132 GKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSY 191
Query: 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 206
N L+ + +++ + +Y+ M G P+ TY+SL+ G+ R + + + +EM+
Sbjct: 192 NGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMET 251
Query: 207 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKV 265
G++ +V + + + G +EA+EI + M E C PD T++ +I +C+ R K+
Sbjct: 252 LGLKPNVYTFTICIRVLGRAGKINEAYEILKRM-DDEGCGPDVVTYTVLIDALCTAR-KL 309
Query: 266 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
A+ +F +M +P+ +L+ + + D V + + + + G PD
Sbjct: 310 DCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPD 362
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 83/159 (52%), Gaps = 2/159 (1%)
Query: 98 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 157
R E R D +S L+ G D L+ ++E+K G+ P+++ YN +++ +G++
Sbjct: 951 RMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSH 1010
Query: 158 RPWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 216
R + ++ EM T G++P+ TY SL+ G A E+ +Y E++ G++ +V +
Sbjct: 1011 RLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTF 1070
Query: 217 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 255
N L+ + G + A+ +++ M + P++ T+ +
Sbjct: 1071 NALIRGYSLSGKPEHAYAVYQTMVTG-GFSPNTGTYEQL 1108
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 1/174 (0%)
Query: 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 204
T N +L+ + + ++ ++ M + + NTY ++ ++ + R+M
Sbjct: 120 TCNYMLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKM 179
Query: 205 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264
+E G L+ YN L+ + + EA E++ M E +P T+SS++ R
Sbjct: 180 REFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRM-ILEGFRPSLQTYSSLMVGLGKRRD 238
Query: 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+ + EM G +PN++ T I+ G+A + ++ L R+ + G PD
Sbjct: 239 IDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPD 292
>sp|O82178|PP186_ARATH Pentatricopeptide repeat-containing protein At2g35130
OS=Arabidopsis thaliana GN=At2g35130 PE=2 SV=1
Length = 591
Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 1/207 (0%)
Query: 122 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181
GN + ++V++ MK KP TYN +++ G+A + + +Y EM + PN TY
Sbjct: 243 GNTEEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTY 302
Query: 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241
+L+ A+ R E ++ +++E G++ V +YN L+ + GY A EIF M+
Sbjct: 303 TALVNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQH 362
Query: 242 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301
C+PD +++ M+ G S+AEA+F EM G P + L+ Y KA+
Sbjct: 363 M-GCEPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVT 421
Query: 302 DVVRALNRLPELGITPDDRFCGCLLNV 328
+ + E G+ PD +LN+
Sbjct: 422 KCEAIVKEMSENGVEPDTFVLNSMLNL 448
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 113/239 (47%), Gaps = 3/239 (1%)
Query: 92 EKSYDTRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 149
E++ D R ++ R P ++ +I LYG A +Y EM++ KPN+ TY L
Sbjct: 246 EEAIDVFQRMKRDRCKPTTETYNLMINLYGKASKSYMSWKLYCEMRSHQCKPNICTYTAL 305
Query: 150 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 209
++ R + + I++++ ++GL P+ Y +L+ +Y RA Y ++ M+ G
Sbjct: 306 VNAFAREGLCEKAEEIFEQLQEDGLEPDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGC 365
Query: 210 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269
+ YN ++ G +A +FE+MK P + +++ S V++ E
Sbjct: 366 EPDRASYNIMVDAYGRAGLHSDAEAVFEEMKRL-GIAPTMKSHMLLLSAYSKARDVTKCE 424
Query: 270 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 328
A+ EM E G EP+ FVL S++ YG+ + + + L + T D L+N+
Sbjct: 425 AIVKEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINI 483
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 106/221 (47%), Gaps = 1/221 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ L++ Y AG G ++ M+ +G +P+ +YN ++D GRA + ++
Sbjct: 333 DVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAVF 392
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+EM G++P ++ LL AY +AR ++ +EM E G++ + N++L + +
Sbjct: 393 EEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIVKEMSENGVEPDTFVLNSMLNLYGRL 452
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G + +I +M++ C D T++ +I I G + E +F E+ E F P++
Sbjct: 453 GQFTKMEKILAEMENGP-CTADISTYNILINIYGKAGFLERIEELFVELKEKNFRPDVVT 511
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 327
TS I Y + + + + + G PD LL+
Sbjct: 512 WTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGTAKVLLS 552
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 2/210 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D +++ ++ YG AG V+EEMK +G+ P M ++ LL +A+ + + I
Sbjct: 368 DRASYNIMVDAYGRAGLHSDAEAVFEEMKRLGIAPTMKSHMLLLSAYSKARDVTKCEAIV 427
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
KEM++NG+ P+ S+L YGR + EM+ ++ YN L+ +
Sbjct: 428 KEMSENGVEPDTFVLNSMLNLYGRLGQFTKMEKILAEMENGPCTADISTYNILINIYGKA 487
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G+ + E+F ++K +N +PD T++S I S + + +F EM+++G P+
Sbjct: 488 GFLERIEELFVELK-EKNFRPDVVTWTSRIGAYSRKKLYVKCLEVFEEMIDSGCAPDGGT 546
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGIT 316
L+ ++ + V L + + G+T
Sbjct: 547 AKVLLSACSSEEQVEQVTSVLRTMHK-GVT 575
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 99/217 (45%), Gaps = 38/217 (17%)
Query: 140 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 199
+P++I +N L+D G+ + + +++Y ++ ++ P +TYA L++AY A E
Sbjct: 152 QPDVICFNLLIDAYGQKFQYKEAESLYVQLLESRYVPTEDTYALLIKAYCMAGLIERAEV 211
Query: 200 VYREMKEKGMQ---LSVTLYNTLL-AMCADVGYTDEAFEIFEDMK--------------- 240
V EM+ + + VT+YN + + G T+EA ++F+ MK
Sbjct: 212 VLVEMQNHHVSPKTIGVTVYNAYIEGLMKRKGNTEEAIDVFQRMKRDRCKPTTETYNLMI 271
Query: 241 -------------------SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 281
S C+P+ T+++++ + G +AE +F ++ E G E
Sbjct: 272 NLYGKASKSYMSWKLYCEMRSHQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGLE 331
Query: 282 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
P+++V +L++ Y +A + + +G PD
Sbjct: 332 PDVYVYNALMESYSRAGYPYGAAEIFSLMQHMGCEPD 368
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 120/232 (51%), Gaps = 13/232 (5%)
Query: 103 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 160
K R +P+ ++ L++ + AG V++EMK G++PN+ TY+ ++D + R +
Sbjct: 248 KDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQIS 307
Query: 161 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220
+ ++ +M D+G +PN T+ +L+R + +A E L VY +MK+ G + YN L+
Sbjct: 308 RAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLI 367
Query: 221 -AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279
A C D + A ++ M + C+ ++ TF+++ + V+ A M+++M+EA
Sbjct: 368 EAHCRDENL-ENAVKVLNTM-IKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAK 425
Query: 280 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--------DRFCG 323
EPN L++ + ++ TD V++ + + + P+ FCG
Sbjct: 426 CEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCG 477
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 111/212 (52%), Gaps = 4/212 (1%)
Query: 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 167
P+ ++ +I L G FD ++ + MK+ V+ ++ T+ L+ RA + +
Sbjct: 151 PHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFN 210
Query: 168 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227
M D G P+ ++ ++ R R + S + +K++ + V +Y L+ G
Sbjct: 211 RMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDR-FEPDVIVYTNLVRGWCRAG 269
Query: 228 YTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
EA ++F++MK + +P+ +T+S +I +C C G++S A +F +ML++G PN
Sbjct: 270 EISEAEKVFKEMKLA-GIEPNVYTYSIVIDALCRC-GQISRAHDVFADMLDSGCAPNAIT 327
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+L++ + KA RT+ V++ N++ +LG PD
Sbjct: 328 FNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPD 359
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 97/211 (45%), Gaps = 39/211 (18%)
Query: 108 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL---------------- 149
PNA F+ L++++ AG + L VY +MK +G +P+ ITYN L
Sbjct: 323 PNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKV 382
Query: 150 LDTMGRAKRPWQVKT-------------------IYKEMTDNGLSPNWNTYASLLRAYGR 190
L+TM + K T +Y +M + PN TY L+R +
Sbjct: 383 LNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVG 442
Query: 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250
++ + L + +EM +K ++ +V Y L+ M +G+ + A+++F++M E C S
Sbjct: 443 SKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEM-VEEKCLTPSL 501
Query: 251 TFSSMITICSCR-GKVSEAEAMFNEMLEAGF 280
+ M+ R G++ + E + +M++ G
Sbjct: 502 SLYEMVLAQLRRAGQLKKHEELVEKMIQKGL 532
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 102 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 161
+K ++ + F+T+ + + +G +Y +M +PN +TYN L+ +K
Sbjct: 389 KKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDM 448
Query: 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLYNTLL 220
V + KEM D + PN NTY L+ + + + +++EM +EK + S++LY +L
Sbjct: 449 VLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVL 508
Query: 221 AMCADVGYTDEAFEIFEDM 239
A G + E+ E M
Sbjct: 509 AQLRRAGQLKKHEELVEKM 527
>sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740
OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1
Length = 559
Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 112/210 (53%), Gaps = 6/210 (2%)
Query: 89 KLKEKSYDTRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 146
+L KS+ + R+ + PN F+ LI Y AG+ + +++Y+EM+ + + N++TY
Sbjct: 180 QLALKSFHSMKRDA---LSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTY 236
Query: 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 206
L+D + + + +Y M ++ + PN Y +++ + + ++ + +M
Sbjct: 237 TALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLN 296
Query: 207 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266
+GM+L +T Y +++ G EA EI EDM+ S+ PD F++M+ G++
Sbjct: 297 QGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSD-LVPDMVIFTTMMNAYFKSGRMK 355
Query: 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 296
A M+++++E GFEP++ L+++I K
Sbjct: 356 AAVNMYHKLIERGFEPDVVALSTMIDGIAK 385
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 147/318 (46%), Gaps = 14/318 (4%)
Query: 108 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 165
PN +ST I + +G L + MK + PN++T+ L+D +A ++
Sbjct: 161 PNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSL 220
Query: 166 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225
YKEM +S N TY +L+ + + + +Y M E ++ + +Y T++
Sbjct: 221 YKEMRRVRMSLNVVTYTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQ 280
Query: 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 285
G +D A + M ++ + D + +I+ GK+ EA + +M ++ P++
Sbjct: 281 RGDSDNAMKFLAKML-NQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMV 339
Query: 286 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 345
+ T+++ Y K+ R V ++L E G PD +++ + + + + C+E
Sbjct: 340 IFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVALSTMIDGIAKNGQLHEAIVYFCIE 399
Query: 346 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV----KKAYCNCLIDLCVNLNLL 401
K+N + Y V L++ EGDF E LF+ IS+ K Y + + LC NL+
Sbjct: 400 KANDVM-YTV--LIDALCKEGDF-IEVERLFSKISEAGLVPDKFMYTSWIAGLCKQGNLV 455
Query: 402 EN---ACKLLELGLTLEV 416
+ ++++ GL L++
Sbjct: 456 DAFKLKTRMVQEGLLLDL 473
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/278 (19%), Positives = 120/278 (43%), Gaps = 39/278 (14%)
Query: 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD----------------- 151
++F++++ G ++ M G +P++I+YN+L+D
Sbjct: 57 SSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRSASLVLES 116
Query: 152 ---TMGRAKRPWQVK-----------------TIYKEMTDNGLSPNWNTYASLLRAYGRA 191
+ G +P V +Y + SPN TY++ + + ++
Sbjct: 117 LRASHGFICKPDIVSFNSLFNGFSKMKMLDEVFVYMGVMLKCCSPNVVTYSTWIDTFCKS 176
Query: 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 251
+ L + MK + +V + L+ G + A ++++M+ + T
Sbjct: 177 GELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVR-MSLNVVT 235
Query: 252 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 311
++++I +G++ AE M++ M+E EPN V T++I + + +D+ ++ L ++
Sbjct: 236 YTALIDGFCKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKML 295
Query: 312 ELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 348
G+ D G +++ + K +E ++VE +EKS+
Sbjct: 296 NQGMRLDITAYGVIISGLCGNGKLKEATEIVEDMEKSD 333
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/224 (20%), Positives = 93/224 (41%), Gaps = 34/224 (15%)
Query: 89 KLKEKSYDTRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT- 145
KLKE + + EK + P+ F+T++ Y +G +N+Y ++ G +P+++
Sbjct: 318 KLKEAT-EIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKLIERGFEPDVVAL 376
Query: 146 -----------------------------YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 176
Y L+D + + +V+ ++ ++++ GL P
Sbjct: 377 STMIDGIAKNGQLHEAIVYFCIEKANDVMYTVLIDALCKEGDFIEVERLFSKISEAGLVP 436
Query: 177 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 236
+ Y S + + D + M ++G+ L + Y TL+ A G EA ++F
Sbjct: 437 DKFMYTSWIAGLCKQGNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVF 496
Query: 237 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280
++M +S PDS F +I G ++ A + +M G
Sbjct: 497 DEMLNS-GISPDSAVFDLLIRAYEKEGNMAAASDLLLDMQRRGL 539
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/93 (19%), Positives = 43/93 (46%)
Query: 122 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181
GN + M G+ +++ Y L+ + + + ++ EM ++G+SP+ +
Sbjct: 452 GNLVDAFKLKTRMVQEGLLLDLLAYTTLIYGLASKGLMVEARQVFDEMLNSGISPDSAVF 511
Query: 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 214
L+RAY + + +M+ +G+ +V+
Sbjct: 512 DLLIRAYEKEGNMAAASDLLLDMQRRGLVTAVS 544
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 3/218 (1%)
Query: 102 EKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
EK + P+ A++ LI+ + G + +MK GV P++ TYN L+ GR
Sbjct: 416 EKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEF 475
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219
+ I KEM DNG PN +Y +L+ + + V R+M+++G+ V +YN L
Sbjct: 476 DKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNML 535
Query: 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279
+ C G ++AF ++M + + + T++++I S GK+SEAE + E+ G
Sbjct: 536 IDGCCSKGKIEDAFRFSKEM-LKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKG 594
Query: 280 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 317
+P++F SLI YG A + + GI P
Sbjct: 595 LKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKP 632
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 102/208 (49%), Gaps = 3/208 (1%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
++TLI Y AGN + V E MKA ++P++IT+N LL + +A + + KEM
Sbjct: 252 YNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMK 311
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYT 229
D G P+ T++ L Y E L VY + G++++ + LL A+C + G
Sbjct: 312 DLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKE-GKI 370
Query: 230 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 289
++A EI + ++ P+ +++MI +G + A M + G +P+
Sbjct: 371 EKAEEIL-GREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNC 429
Query: 290 LIQCYGKAQRTDDVVRALNRLPELGITP 317
LI+ + + ++ + +N++ G++P
Sbjct: 430 LIRRFCELGEMENAEKEVNKMKLKGVSP 457
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 107/239 (44%), Gaps = 16/239 (6%)
Query: 96 DTRARNEKWRIDPNAFSTLIK--------LYGTA-------GNFDGCLNVYEEMKAIGVK 140
D + +++R+ N F +++ +YG A + L ++ MK +
Sbjct: 152 DHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIY 211
Query: 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 200
P++ YN L+D + + KR + ++ EM L P+ TY +L+ Y +A E + V
Sbjct: 212 PSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKV 271
Query: 201 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 260
MK ++ S+ +NTLL G ++A + ++MK PD++TFS + S
Sbjct: 272 RERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDL-GFVPDAFTFSILFDGYS 330
Query: 261 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 319
K A ++ +++G + N + + L+ K + + L R G+ P++
Sbjct: 331 SNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNE 389
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 92/178 (51%), Gaps = 9/178 (5%)
Query: 106 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
+ P+ F+ +LI YG AGN C+ +YEEMK G+KP + TY+ LL ++ + +
Sbjct: 595 LKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYH-LLISLCTKEGIELTE 653
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
++ EM+ L P+ Y +L Y E ++ ++M EK + L T YN+L+
Sbjct: 654 RLFGEMS---LKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQ 710
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGF 280
VG E + ++M + E +P++ T++ ++ C + +S A + EM E GF
Sbjct: 711 LKVGKLCEVRSLIDEMNARE-MEPEADTYNIIVKGHCEVKDYMS-AYVWYREMQEKGF 766
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/237 (20%), Positives = 101/237 (42%), Gaps = 1/237 (0%)
Query: 100 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
RNE ++ + L+ F +NV+ + +P+ Y + +
Sbjct: 136 RNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPSKFMYGKAIQAAVKLSDV 195
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219
+ ++ M + + P+ Y L+ + + D ++ EM + + S+ YNTL
Sbjct: 196 GKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTL 255
Query: 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279
+ G +++F++ E MK +++ +P TF++++ G V +AE + EM + G
Sbjct: 256 IDGYCKAGNPEKSFKVRERMK-ADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLG 314
Query: 280 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 336
F P+ F + L Y ++ + + + G+ + C LLN + + K E
Sbjct: 315 FVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIE 371
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 56/115 (48%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ ++ Y G+ + N+ ++M + + TYN+L+ + + +V+++
Sbjct: 664 DLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLI 723
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221
EM + P +TY +++ + + YREM+EKG L V + N L++
Sbjct: 724 DEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVS 778
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 117/230 (50%), Gaps = 1/230 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D +++T+I + G+ D + Y EM G+ P+++TYN+++ + +A+ + +
Sbjct: 195 DVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVL 254
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
M NG+ P+ TY S+L Y + ++ + ++M+ G++ V Y+ L+
Sbjct: 255 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKN 314
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G EA +IF+ M + +P+ T+ +++ + +G + E + + M+ G P+ +V
Sbjct: 315 GRCMEARKIFDSM-TKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYV 373
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 336
+ LI Y K + D + +++ + G+ P+ G ++ ++ ++ + E
Sbjct: 374 FSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 423
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 1/233 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D FS LI Y G D + V+ +M+ G+ PN +TY ++ + ++ R +
Sbjct: 370 DHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYF 429
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
++M D GLSP Y SL+ E + EM ++G+ L+ +N+++
Sbjct: 430 EQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKE 489
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G E+ ++FE M +P+ T++++I GK+ EA + + M+ G +PN
Sbjct: 490 GRVIESEKLFELMVRI-GVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVT 548
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGK 339
++LI Y K R +D + + G++PD +L + QT + K
Sbjct: 549 YSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAK 601
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 91/180 (50%), Gaps = 3/180 (1%)
Query: 106 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
+ PN ++TLI Y AG D + + M ++G+KPN +TY+ L++ + R
Sbjct: 507 VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDAL 566
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
++KEM +G+SP+ TY +L+ + R +Y + E G Q+ ++ YN +L
Sbjct: 567 VLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGL 626
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283
TD+A ++F+++ + + ++ TF+ MI G+ EA+ +F G PN
Sbjct: 627 CKNKLTDDALQMFQNL-CLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 685
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 123/271 (45%), Gaps = 6/271 (2%)
Query: 66 PHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFD 125
P T S Y+ N + A K+ +D+ + + + + TL++ Y T G
Sbjct: 299 PDVVTYSLLMDYLCKNGRCMEARKI----FDSMTK-RGLKPEITTYGTLLQGYATKGALV 353
Query: 126 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185
+ + M G+ P+ ++ L+ + + Q ++ +M GL+PN TY +++
Sbjct: 354 EMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVI 413
Query: 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 245
++ ED + + +M ++G+ +YN+L+ + A E+ +M C
Sbjct: 414 GILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGIC 473
Query: 246 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 305
++ F+S+I G+V E+E +F M+ G +PN+ +LI Y A + D+ ++
Sbjct: 474 L-NTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMK 532
Query: 306 ALNRLPELGITPDDRFCGCLLNVMTQTPKEE 336
L+ + +G+ P+ L+N + + E
Sbjct: 533 LLSGMVSVGLKPNTVTYSTLINGYCKISRME 563
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 5/227 (2%)
Query: 104 WRIDPNAFSTLIK-LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 162
+R+D AF+ L+K L D V M +G PN+ +YN LL + R +
Sbjct: 118 FRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQEA 177
Query: 163 KTIYKEMTDN---GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219
+ M D+ G P+ +Y +++ + + + S Y EM ++G+ V YN++
Sbjct: 178 LELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSI 237
Query: 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279
+A D+A E+ M + PD T++S++ G+ EA +M G
Sbjct: 238 IAALCKAQAMDKAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDG 296
Query: 280 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 326
EP++ + L+ K R + + + + + G+ P+ G LL
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLL 343
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 6/239 (2%)
Query: 108 PNAFSTLIKLYGTAGNFDG-----CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 162
PN FS I L G L++ + + G P++++Y +++ + +
Sbjct: 156 PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215
Query: 163 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222
+ Y EM D G+ P+ TY S++ A +A+ + + V M + G+ YN++L
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 275
Query: 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 282
G EA + M+ S+ +PD T+S ++ G+ EA +F+ M + G +P
Sbjct: 276 YCSSGQPKEAIGFLKKMR-SDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKP 334
Query: 283 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 341
+ +L+Q Y ++ L+ + GI PD L+ + K + LV
Sbjct: 335 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLV 393
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 117/263 (44%), Gaps = 13/263 (4%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
F+++I + G ++E M IGVKPN+ITYN L++ A + + + M
Sbjct: 479 FNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMV 538
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
GL PN TY++L+ Y + ED L +++EM+ G+ + YN +L T
Sbjct: 539 SVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTA 598
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS-EAEAMFNEMLEAGFEPNLFVLTS 289
A E++ ++ +E+ + ++I C+ K++ +A MF + +
Sbjct: 599 AAKELY--VRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNI 656
Query: 290 LIQCYGKAQRTDDVVRALNRLPELGITPD---DRFCGCLLNVMTQTPKEELGKLVECVEK 346
+I K R D+ G+ P+ R N++ Q EEL +L +E
Sbjct: 657 MIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMA--ENIIGQGLLEELDQLFLSMED 714
Query: 347 S-----NSKLGYVVKLLLEEQDI 364
+ + L ++V+ LL+ +I
Sbjct: 715 NGCTVDSGMLNFIVRELLQRGEI 737
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI--FEDMK--SSENCQPDSW 250
ED V+ E+ +G S+ N LA DV A + + M ++ PD
Sbjct: 32 EDARHVFDELLRRGRGASIYGLNRALA---DVARDSPAAAVSRYNRMARAGADEVTPDLC 88
Query: 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR-ALNR 309
T+ +I C G++ A +++ GF + T L++ +RT D + L R
Sbjct: 89 TYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 148
Query: 310 LPELGITPD 318
+ ELG P+
Sbjct: 149 MTELGCIPN 157
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 107/212 (50%), Gaps = 1/212 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ LI+ Y G +N+ EM G +++TYN +L + + K + ++
Sbjct: 409 DNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLF 468
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
EMT+ L P+ T L+ + + ++ + ++++MKEK ++L V YNTLL V
Sbjct: 469 NEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKV 528
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G D A EI+ DM S E P ++S ++ +G ++EA +++EM+ +P + +
Sbjct: 529 GDIDTAKEIWADMVSKE-ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMI 587
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
S+I+ Y ++ D L ++ G PD
Sbjct: 588 CNSMIKGYCRSGNASDGESFLEKMISEGFVPD 619
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/414 (22%), Positives = 181/414 (43%), Gaps = 51/414 (12%)
Query: 86 RASKLKEKSYD-TRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 144
+A KL+E T R++ + + +A + LI G + VY+E+ GV N+
Sbjct: 177 QARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVY 236
Query: 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 204
T N +++ + + + +V T ++ + G+ P+ TY +L+ AY E+ + M
Sbjct: 237 TLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAM 296
Query: 205 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264
KG V YNT++ G + A E+F +M S PDS T+ S++ +G
Sbjct: 297 PGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS-GLSPDSTTYRSLLMEACKKGD 355
Query: 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD----- 319
V E E +F++M P+L +S++ + ++ D + N + E G+ PD+
Sbjct: 356 VVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTI 415
Query: 320 ---RFC------------------GCLLNVMTQT-------PKEELGK----LVECVEKS 347
+C GC ++V+T ++ LG+ E E++
Sbjct: 416 LIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERA 475
Query: 348 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKL 407
Y + +L++ G+ + A ELF + + + +D+ LL+ K+
Sbjct: 476 LFPDSYTLTILIDGHCKLGNLQN-AMELFQKMKEKRIR------LDVVTYNTLLDGFGKV 528
Query: 408 LELGLTLEVYTDIQSR----SPTQWSLHLKSL-SLGAALTALHIWINDLSKALE 456
++ E++ D+ S+ +P +S+ + +L S G A +W +SK ++
Sbjct: 529 GDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIK 582
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/225 (21%), Positives = 104/225 (46%), Gaps = 1/225 (0%)
Query: 98 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 157
+ + ++ R+D ++TL+ +G G+ D ++ +M + + P I+Y+ L++ +
Sbjct: 505 KMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKG 564
Query: 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217
+ ++ EM + P S+++ Y R+ D S +M +G YN
Sbjct: 565 HLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYN 624
Query: 218 TLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276
TL+ +AF + + M+ + PD +T++S++ + ++ EAE + +M+
Sbjct: 625 TLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMI 684
Query: 277 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 321
E G P+ T +I + + R + + + G +PDD+F
Sbjct: 685 ERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDKF 729
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 102/223 (45%), Gaps = 3/223 (1%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D + LI + GN + ++++MK ++ +++TYN LLD G+ K I+
Sbjct: 479 DSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIW 538
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+M + P +Y+ L+ A + + V+ EM K ++ +V + N+++
Sbjct: 539 ADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRS 598
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE--AGFEPNL 284
G + E M SE PD +++++I +S+A + +M E G P++
Sbjct: 599 GNASDGESFLEKM-ISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDV 657
Query: 285 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 327
F S++ + + + + L ++ E G+ PD C++N
Sbjct: 658 FTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMIN 700
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 74/165 (44%), Gaps = 1/165 (0%)
Query: 177 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIF 236
N + + L+R Y +AR + + ++ KG +S+ N L+ +G+ + A+ ++
Sbjct: 164 NDSVFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVY 223
Query: 237 EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 296
+++ S + +T + M+ GK+ + +++ E G P++ +LI Y
Sbjct: 224 QEI-SRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSS 282
Query: 297 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 341
++ +N +P G +P ++N + + K E K V
Sbjct: 283 KGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 109/228 (47%), Gaps = 1/228 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ +I +G D + ++ M + G++P+ +T+N L+D + R + ++
Sbjct: 443 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF 502
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+ M G P TY ++ +YG +D + +MK +G+ +V + TL+ +
Sbjct: 503 EAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKS 562
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G ++A E E+MKS +P S ++++I + RG +A F M G +P+L
Sbjct: 563 GRFNDAIECLEEMKSV-GLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLA 621
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334
L SLI +G+ +R + L + E G+ PD L+ + + K
Sbjct: 622 LNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDK 669
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/305 (27%), Positives = 136/305 (44%), Gaps = 13/305 (4%)
Query: 51 TQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTRARNEKWR---ID 107
+S +P+K Q TG S K+ V+ S A ++ + A E+ R I
Sbjct: 280 AKSGDPSKALQLLGMAQA-TGLSAKTATLVSIISALADS--GRTLEAEALFEELRQSGIK 336
Query: 108 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 165
P A++ L+K Y G ++ EM+ GV P+ TY+ L+D A R + +
Sbjct: 337 PRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIV 396
Query: 166 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225
KEM + PN ++ LL + + T V +EMK G++ YN ++
Sbjct: 397 LKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGK 456
Query: 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNL 284
D A F+ M SE +PD T++++I C C+ G+ AE MF M G P
Sbjct: 457 FNCLDHAMTTFDRM-LSEGIEPDRVTWNTLID-CHCKHGRHIVAEEMFEAMERRGCLPCA 514
Query: 285 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 344
+I YG +R DD+ R L ++ GI P+ L++V ++ + +EC+
Sbjct: 515 TTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGR--FNDAIECL 572
Query: 345 EKSNS 349
E+ S
Sbjct: 573 EEMKS 577
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 108/227 (47%), Gaps = 5/227 (2%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT-- 164
D + +S LI Y AG ++ V +EM+A V+PN ++ LL R + WQ KT
Sbjct: 373 DEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGF-RDRGEWQ-KTFQ 430
Query: 165 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224
+ KEM G+ P+ Y ++ +G+ + ++ + M +G++ +NTL+
Sbjct: 431 VLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHC 490
Query: 225 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 284
G A E+FE M+ C P + T++ MI + + + + + +M G PN+
Sbjct: 491 KHGRHIVAEEMFEAME-RRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNV 549
Query: 285 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 331
T+L+ YGK+ R +D + L + +G+ P L+N Q
Sbjct: 550 VTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQ 596
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 3/145 (2%)
Query: 106 IDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
I PN + TL+ +YG +G F+ + EEMK++G+KP+ YN L++ + Q
Sbjct: 545 ILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAV 604
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
++ MT +GL P+ SL+ A+G R + +V + MKE G++ V Y TL+
Sbjct: 605 NAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKAL 664
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPD 248
V + ++E+M S C+PD
Sbjct: 665 IRVDKFQKVPVVYEEMIMS-GCKPD 688
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 109/232 (46%), Gaps = 6/232 (2%)
Query: 106 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
I+P+ ++TLI + G ++E M+ G P TYN ++++ G +R +K
Sbjct: 475 IEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINSYGDQERWDDMK 534
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
+ +M G+ PN T+ +L+ YG++ D + EMK G++ S T+YN L+
Sbjct: 535 RLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAY 594
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283
A G +++A F M +S+ +P +S+I + +EA A+ M E G +P+
Sbjct: 595 AQRGLSEQAVNAFRVM-TSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPD 653
Query: 284 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL---LNVMTQT 332
+ T+L++ + + V + G PD + L L M QT
Sbjct: 654 VVTYTTLMKALIRVDKFQKVPVVYEEMIMSGCKPDRKARSMLRSALRYMKQT 705
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 105/239 (43%), Gaps = 9/239 (3%)
Query: 102 EKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
E + PN+F S L+ + G + V +EMK+IGVKP+ YN ++DT G+
Sbjct: 401 EAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCL 460
Query: 160 WQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 216
T + M G+ P+ WNT +GR E+ ++ M+ +G T Y
Sbjct: 461 DHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEE---MFEAMERRGCLPCATTY 517
Query: 217 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276
N ++ D D+ + MKS + P+ T ++++ + G+ ++A EM
Sbjct: 518 NIMINSYGDQERWDDMKRLLGKMKS-QGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMK 576
Query: 277 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKE 335
G +P+ + +LI Y + ++ V A + G+ P L+N + ++
Sbjct: 577 SVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRD 635
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/267 (20%), Positives = 119/267 (44%), Gaps = 7/267 (2%)
Query: 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT--LSVY 201
+TYN L+ R + + +M +G ++ Y+ ++++ R+ + L +Y
Sbjct: 198 LTYNALIGACARNNDIEKALNLIAKMRQDGYQSDFVNYSLVIQSLTRSNKIDSVMLLRLY 257
Query: 202 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 261
+E++ ++L V L N ++ A G +A ++ M + + T S+I+ +
Sbjct: 258 KEIERDKLELDVQLVNDIIMGFAKSGDPSKALQLL-GMAQATGLSAKTATLVSIISALAD 316
Query: 262 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 321
G+ EAEA+F E+ ++G +P +L++ Y K D ++ + + G++PD+
Sbjct: 317 SGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHT 376
Query: 322 CGCLLNVMTQTPKEELGKLV--ECVEKSNSKLGYVVKLLLEEQDIEGDFKK--EATELFN 377
L++ + E ++V E +V LL G+++K + +
Sbjct: 377 YSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMK 436
Query: 378 SISKDVKKAYCNCLIDLCVNLNLLENA 404
SI + + N +ID N L++A
Sbjct: 437 SIGVKPDRQFYNVVIDTFGKFNCLDHA 463
>sp|Q56XR6|PP421_ARATH Pentatricopeptide repeat-containing protein At5g46680
OS=Arabidopsis thaliana GN=At5g46680 PE=2 SV=2
Length = 468
Score = 95.5 bits (236), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 122/233 (52%), Gaps = 7/233 (3%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++TLIK Y D V M+ G++P++ TYN+L+ + +V ++
Sbjct: 47 DVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLF 106
Query: 167 KEMTDNGLSPNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225
EM +GLSP+ +Y +L+ Y + R+GE ++ ++ G+ + YN LL
Sbjct: 107 DEMLHSGLSPDMWSYNTLMSCYFKLGRHGEAFKILHEDIHLAGLVPGIDTYNILLDALCK 166
Query: 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNL 284
G+TD A E+F+ +KS +P+ T++ +I +C R +V + M E+ ++G+ PN
Sbjct: 167 SGHTDNAIELFKHLKS--RVKPELMTYNILINGLCKSR-RVGSVDWMMRELKKSGYTPNA 223
Query: 285 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC-LLNVMTQTPKEE 336
T++++ Y K +R + ++ ++ + G T D F C +++ + +T + E
Sbjct: 224 VTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDG-FANCAVVSALIKTGRAE 275
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 109/219 (49%), Gaps = 1/219 (0%)
Query: 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 168
+ ++ L+ +G+ D + +++ +K+ VKP ++TYN L++ + +++R V + +E
Sbjct: 155 DTYNILLDALCKSGHTDNAIELFKHLKS-RVKPELMTYNILINGLCKSRRVGSVDWMMRE 213
Query: 169 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 228
+ +G +PN TY ++L+ Y + + E L ++ +MK++G +++ G
Sbjct: 214 LKKSGYTPNAVTYTTMLKMYFKTKRIEKGLQLFLKMKKEGYTFDGFANCAVVSALIKTGR 273
Query: 229 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 288
+EA+E ++ S D ++++++ + G + + + E+ G +P+ + T
Sbjct: 274 AEEAYECMHELVRSGTRSQDIVSYNTLLNLYFKDGNLDAVDDLLEEIEMKGLKPDDYTHT 333
Query: 289 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 327
++ T + L + E+G+ P C CL++
Sbjct: 334 IIVNGLLNIGNTGGAEKHLACIGEMGMQPSVVTCNCLID 372
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 151/328 (46%), Gaps = 28/328 (8%)
Query: 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 168
+A + LIK +G G + L V+ +MK G++P + TYN L++ + A + +++
Sbjct: 188 SAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEV 247
Query: 169 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 228
M + P+ TY ++++ Y +A + + R+M+ +G + Y T++ C Y
Sbjct: 248 MESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQAC----Y 303
Query: 229 TDEAF----EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 284
D F ++++M + Q FS +I GK++E +F M+ G +PN+
Sbjct: 304 ADSDFGSCVALYQEM-DEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNV 362
Query: 285 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECV 344
+ T LI Y K+ +D +R L+R+ + G PD ++N + + G++ E +
Sbjct: 363 AIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKN-----GRVEEAL 417
Query: 345 EKSNSKL--GYVVKLLLEEQDIEGDFK----KEATELFNSISKD--VKKAYC-NCLIDLC 395
+ ++ G + + I+G K EA LF +S+ + +YC N LID
Sbjct: 418 DYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAF 477
Query: 396 VNLNLLENACKLL-----ELGLTLEVYT 418
++ A L E G VYT
Sbjct: 478 TKHRKVDEAIALFKRMEEEEGCDQTVYT 505
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 102/214 (47%), Gaps = 2/214 (0%)
Query: 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 164
++ P+AFS +I G + V+E M G KPN+ Y L+D ++
Sbjct: 324 QVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIR 383
Query: 165 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224
+ M D G P+ TY+ ++ + E+ L + + G+ ++ Y++L+
Sbjct: 384 LLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLG 443
Query: 225 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM-LEAGFEPN 283
G DEA +FE+M S + C DS+ ++++I + KV EA A+F M E G +
Sbjct: 444 KAGRVDEAERLFEEM-SEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQT 502
Query: 284 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 317
++ T L+ K R ++ ++ + + + GITP
Sbjct: 503 VYTYTILLSGMFKEHRNEEALKLWDMMIDKGITP 536
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 104/229 (45%), Gaps = 3/229 (1%)
Query: 108 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 165
PN ++ LI Y +G+ + + + M G KP+++TY+ +++ + + R +
Sbjct: 360 PNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDY 419
Query: 166 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225
+ +GL+ N Y+SL+ G+A ++ ++ EM EKG YN L+
Sbjct: 420 FHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTK 479
Query: 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 285
DEA +F+ M+ E C +T++ +++ + EA +++ M++ G P
Sbjct: 480 HRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAA 539
Query: 286 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334
+L + + + L+ L +G+ D C ++N + + +
Sbjct: 540 CFRALSTGLCLSGKVARACKILDELAPMGVILDAA-CEDMINTLCKAGR 587
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 115/242 (47%), Gaps = 3/242 (1%)
Query: 98 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 157
R +E ++ D +S ++ G + L+ + + G+ N + Y++L+D +G+A
Sbjct: 387 RMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAG 446
Query: 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM-KEKGMQLSVTLY 216
R + + +++EM++ G + + Y +L+ A+ + R ++ +++++ M +E+G +V Y
Sbjct: 447 RVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTY 506
Query: 217 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276
LL+ +EA +++ DM + P + F ++ T GKV+ A + +E+
Sbjct: 507 TILLSGMFKEHRNEEALKLW-DMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELA 565
Query: 277 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 336
G + +I KA R + + + + E G R ++N + + K +
Sbjct: 566 PMGVILDA-ACEDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKAD 624
Query: 337 LG 338
L
Sbjct: 625 LA 626
>sp|Q9M8M3|PP136_ARATH Pentatricopeptide repeat-containing protein At1g80550,
mitochondrial OS=Arabidopsis thaliana GN=At1g80550 PE=2
SV=1
Length = 448
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 111/218 (50%), Gaps = 4/218 (1%)
Query: 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 173
+++ + G + C +++M GV ++ +Y+ +D M ++ +PW+ +YKEM
Sbjct: 195 ILRGWSKLGWWGKCKEYWKKMDTEGVTKDLFSYSIYMDIMCKSGKPWKAVKLYKEMKSRR 254
Query: 174 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 233
+ + Y +++RA G ++ E + V+REM+E+G + +V +NT++ + + G +A+
Sbjct: 255 MKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRMRDAY 314
Query: 234 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC 293
+ ++M CQPDS T+ + + K SE ++F M+ +G P + L++
Sbjct: 315 RMLDEM-PKRGCQPDSITYMCLFSRLE---KPSEILSLFGRMIRSGVRPKMDTYVMLMRK 370
Query: 294 YGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 331
+ + V+ + E G TPD +++ + Q
Sbjct: 371 FERWGFLQPVLYVWKTMKESGDTPDSAAYNAVIDALIQ 408
Score = 65.9 bits (159), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 85/183 (46%), Gaps = 4/183 (2%)
Query: 100 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
++ + ++D A++T+I+ G + + + V+ EM+ G +PN+ T+N ++ + R
Sbjct: 251 KSRRMKLDVVAYNTVIRAIGASQGVEFGIRVFREMRERGCEPNVATHNTIIKLLCEDGRM 310
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219
+ EM G P+ TY L + R + LS++ M G++ + Y L
Sbjct: 311 RDAYRMLDEMPKRGCQPDSITYMCL---FSRLEKPSEILSLFGRMIRSGVRPKMDTYVML 367
Query: 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279
+ G+ +++ MK S + PDS ++++I +G + A EM+E G
Sbjct: 368 MRKFERWGFLQPVLYVWKTMKESGD-TPDSAAYNAVIDALIQKGMLDMAREYEEEMIERG 426
Query: 280 FEP 282
P
Sbjct: 427 LSP 429
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 110/216 (50%), Gaps = 3/216 (1%)
Query: 105 RIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 162
R P+ A S+L++ G + LN+ + + GV PN+ YN L+D++ + ++ +
Sbjct: 327 RFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEA 386
Query: 163 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222
+ ++ M GL PN TY+ L+ + R + LS EM + G++LSV YN+L+
Sbjct: 387 ELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLING 446
Query: 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 282
G A +M ++ +P T++S++ +GK+++A +++EM G P
Sbjct: 447 HCKFGDISAAEGFMAEM-INKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAP 505
Query: 283 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+++ T+L+ +A D V+ N + E + P+
Sbjct: 506 SIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPN 541
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 103/240 (42%), Gaps = 3/240 (1%)
Query: 101 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 160
N+K +++L+ Y + G + L +Y EM G+ P++ T+ LL + RA
Sbjct: 465 NKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIR 524
Query: 161 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220
++ EM + + PN TY ++ Y +EM EKG+ Y L+
Sbjct: 525 DAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLI 584
Query: 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280
G EA ++F D NC+ + ++ ++ GK+ EA ++ EM++ G
Sbjct: 585 HGLCLTGQASEA-KVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGV 643
Query: 281 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP--KEELG 338
+ +L LI K + L + + G+ PDD +++ ++T KE G
Sbjct: 644 DLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFG 703
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 102/233 (43%), Gaps = 7/233 (3%)
Query: 103 KWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 160
+W + PN ++ +I+ Y G+ +EM G+ P+ +Y L+ + +
Sbjct: 535 EWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQAS 594
Query: 161 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220
+ K + N Y LL + R E+ LSV +EM ++G+ L + Y L+
Sbjct: 595 EAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLI 654
Query: 221 AMCADVGYTDEA--FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278
+ + D F + ++M +PD ++SMI S G EA +++ M+
Sbjct: 655 D--GSLKHKDRKLFFGLLKEMHD-RGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINE 711
Query: 279 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 331
G PN T++I KA ++ +++ + P+ GC L+++T+
Sbjct: 712 GCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTK 764
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 105/228 (46%), Gaps = 12/228 (5%)
Query: 123 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 182
+F + ++ +M ++G++P++ Y ++ ++ K + K + M G N Y
Sbjct: 207 HFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYN 266
Query: 183 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242
L+ + + + + + +++ K ++ V Y TL+ V + FEI +M
Sbjct: 267 VLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKV----QEFEIGLEMMDE 322
Query: 243 ENC---QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 299
C P SS++ RGK+ EA + +++ G PNLFV +LI K ++
Sbjct: 323 MLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRK 382
Query: 300 TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE-----LGKLVE 342
+ +R+ ++G+ P+D L+++ + K + LG++V+
Sbjct: 383 FHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVD 430
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 92/211 (43%), Gaps = 1/211 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D + TL+ F+ L + +EM + P+ ++L++ + + + + +
Sbjct: 296 DVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLV 355
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
K + D G+SPN Y +L+ + + R + ++ M + G++ + Y+ L+ M
Sbjct: 356 KRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRR 415
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G D A +M + + + ++S+I G +S AE EM+ EP +
Sbjct: 416 GKLDTALSFLGEMVDT-GLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVT 474
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITP 317
TSL+ Y + + +R + + GI P
Sbjct: 475 YTSLMGGYCSKGKINKALRLYHEMTGKGIAP 505
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 84/214 (39%), Gaps = 1/214 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++++I G+F +++ M G PN +TY +++ + +A + + +
Sbjct: 681 DDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLC 740
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+M PN TY L + KG+ + YN L+
Sbjct: 741 SKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCRQ 800
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G +EA E+ M + PD T+++MI R V +A ++N M E G P+
Sbjct: 801 GRIEEASELITRM-IGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVA 859
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320
+LI A N + G+ P+++
Sbjct: 860 YNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNK 893
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 126/259 (48%), Gaps = 8/259 (3%)
Query: 87 ASKLKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 146
A K+ EK D+ R + +++LIK + G + +Y++M P++
Sbjct: 466 AYKVYEKMLDSDCRT-----NSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLL 520
Query: 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 206
N +D M +A P + + +++E+ P+ +Y+ L+ +A + +T ++ MKE
Sbjct: 521 NTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKE 580
Query: 207 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266
+G L YN ++ G ++A+++ E+MK ++ +P T+ S+I + ++
Sbjct: 581 QGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMK-TKGFEPTVVTYGSVIDGLAKIDRLD 639
Query: 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 326
EA +F E E N+ + +SLI +GK R D+ L L + G+TP+ LL
Sbjct: 640 EAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLL 699
Query: 327 NVMTQTPKEELGKLVECVE 345
+ + + EE+ + + C +
Sbjct: 700 DALVKA--EEINEALVCFQ 716
Score = 89.7 bits (221), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 106/217 (48%), Gaps = 3/217 (1%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ I +G G D + E++A G+KP+ +TY +++ + +A R + ++
Sbjct: 237 DIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKANRLDEAVEMF 296
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+ + N P Y +++ YG A ++ S+ + KG SV YN +L +
Sbjct: 297 EHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKM 356
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G DEA ++FE+MK ++ P+ T++ +I + GK+ A + + M +AG PN+
Sbjct: 357 GKVDEALKVFEEMK--KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRT 414
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFC 322
+ ++ K+Q+ D+ + TPD+ FC
Sbjct: 415 VNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFC 451
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 102/214 (47%), Gaps = 3/214 (1%)
Query: 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 165
+D A++ +I + G + + EEMK G +P ++TY +++D + + R + +
Sbjct: 585 LDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYML 644
Query: 166 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225
++E + N Y+SL+ +G+ ++ + E+ +KG+ ++ +N+LL
Sbjct: 645 FEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVK 704
Query: 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPNL 284
+EA F+ MK + C P+ T+ +I +C R K ++A + EM + G +P+
Sbjct: 705 AEEINEALVCFQSMKELK-CTPNQVTYGILINGLCKVR-KFNKAFVFWQEMQKQGMKPST 762
Query: 285 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
T++I KA + +R G PD
Sbjct: 763 ISYTTMISGLAKAGNIAEAGALFDRFKANGGVPD 796
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/286 (21%), Positives = 124/286 (43%), Gaps = 8/286 (2%)
Query: 129 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188
+V + M+ +P Y L+ + T++++M + G P + + +L+R +
Sbjct: 154 DVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGF 213
Query: 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 248
+ + LS+ EMK + + LYN + VG D A++ F +++++ +PD
Sbjct: 214 AKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEAN-GLKPD 272
Query: 249 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 308
T++SMI + ++ EA MF + + P + ++I YG A + D+ L
Sbjct: 273 EVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE 332
Query: 309 RLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN----SKLGYVVKLLLEEQD 363
R G P C+L + + K +E K+ E ++K S ++ +L
Sbjct: 333 RQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGK 392
Query: 364 IEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 409
++ F+ + + +V+ N ++D L+ AC + E
Sbjct: 393 LDTAFELRDSMQKAGLFPNVRTV--NIMVDRLCKSQKLDEACAMFE 436
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 93/182 (51%), Gaps = 1/182 (0%)
Query: 99 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 158
A++++ ++ +S+LI +G G D + EE+ G+ PN+ T+N+LLD + +A+
Sbjct: 648 AKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEE 707
Query: 159 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 218
+ ++ M + +PN TY L+ + R ++EM+++GM+ S Y T
Sbjct: 708 INEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTT 767
Query: 219 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278
+++ A G EA +F+ K++ PDS +++MI S + +A ++F E
Sbjct: 768 MISGLAKAGNIAEAGALFDRFKANGGV-PDSACYNAMIEGLSNGNRAMDAFSLFEETRRR 826
Query: 279 GF 280
G
Sbjct: 827 GL 828
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 104/227 (45%), Gaps = 11/227 (4%)
Query: 108 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 165
PN ++ LI + AG D + + M+ G+ PN+ T N ++D + ++++ + +
Sbjct: 375 PNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAM 434
Query: 166 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225
++EM +P+ T+ SL+ G+ +D VY +M + + + +Y +L+ +
Sbjct: 435 FEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFN 494
Query: 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 285
G ++ +I++DM ++NC PD ++ + G+ + AMF E+ F P+
Sbjct: 495 HGRKEDGHKIYKDM-INQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDAR 553
Query: 286 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR--------FCGC 324
+ LI KA ++ + E G D R FC C
Sbjct: 554 SYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKC 600
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/227 (19%), Positives = 104/227 (45%), Gaps = 4/227 (1%)
Query: 86 RASKLKEKSYDTRARNEKWRIDP--NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 143
+A+KL+E YD K++ P +A++TLI + + D L ++++M+ +G +P +
Sbjct: 145 KANKLRE-GYDVVQMMRKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTV 203
Query: 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 203
+ L+ + R ++ EM + L + Y + ++G+ + + E
Sbjct: 204 HLFTTLIRGFAKEGRVDSALSLLDEMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHE 263
Query: 204 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263
++ G++ Y +++ + DEA E+FE ++ + P ++ +++MI G
Sbjct: 264 IEANGLKPDEVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRV-PCTYAYNTMIMGYGSAG 322
Query: 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310
K EA ++ G P++ ++ C K + D+ ++ +
Sbjct: 323 KFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEM 369
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 96/211 (45%), Gaps = 2/211 (0%)
Query: 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 169
A++ ++ G D L V+EEMK PN+ TYN L+D + RA + + M
Sbjct: 345 AYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLCRAGKLDTAFELRDSM 403
Query: 170 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 229
GL PN T ++ +++ ++ +++ EM K + +L+ VG
Sbjct: 404 QKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRV 463
Query: 230 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 289
D+A++++E M S+ C+ +S ++S+I G+ + ++ +M+ P+L +L +
Sbjct: 464 DDAYKVYEKMLDSD-CRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNT 522
Query: 290 LIQCYGKAQRTDDVVRALNRLPELGITPDDR 320
+ C KA + + PD R
Sbjct: 523 YMDCMFKAGEPEKGRAMFEEIKARRFVPDAR 553
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 36/201 (17%)
Query: 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT------------------------ 180
+YN+LL M R + + I EM+ G P+ NT
Sbjct: 100 SYNSLLLVMARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMM 159
Query: 181 -----------YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 229
Y +L+ A+ + + L+++++M+E G + +V L+ TL+ A G
Sbjct: 160 RKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRV 219
Query: 230 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 289
D A + ++MKSS + D ++ I GKV A F+E+ G +P+ TS
Sbjct: 220 DSALSLLDEMKSS-SLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTS 278
Query: 290 LIQCYGKAQRTDDVVRALNRL 310
+I KA R D+ V L
Sbjct: 279 MIGVLCKANRLDEAVEMFEHL 299
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 67/159 (42%), Gaps = 9/159 (5%)
Query: 69 KTGSSPKSYIW--VNPKSPRASKLKEKSYDTRARNEKWRIDPN--AFSTLIKLYGTAGNF 124
+ G +P Y W + +A ++ E ++ E + PN + LI F
Sbjct: 685 QKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKE-LKCTPNQVTYGILINGLCKVRKF 743
Query: 125 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184
+ ++EM+ G+KP+ I+Y ++ + +A + ++ NG P+ Y ++
Sbjct: 744 NKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAM 803
Query: 185 LRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTL 219
+ D S++ E + +G+ + V L +TL
Sbjct: 804 IEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTL 842
>sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490,
mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2
SV=1
Length = 836
Score = 93.2 bits (230), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 104/213 (48%), Gaps = 1/213 (0%)
Query: 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 165
+D + + +I +G D ++++MK ++P+ +++L+D+MG+A R +
Sbjct: 311 LDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKV 370
Query: 166 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225
Y EM G P+ + SL+ +Y +A + L ++ EMK+ G + + LY ++ A
Sbjct: 371 YMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAK 430
Query: 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 285
G + A +F+DM+ + P T+S ++ + + G+V A ++N M AG P L
Sbjct: 431 SGKLEVAMTVFKDMEKA-GFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLS 489
Query: 286 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
SL+ + D + L + +G + D
Sbjct: 490 SYISLLTLLANKRLVDVAGKILLEMKAMGYSVD 522
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 95/443 (21%), Positives = 196/443 (44%), Gaps = 47/443 (10%)
Query: 98 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 157
+ + K R + FS+L+ G AG D + VY EM+ G +P+ + +L+D+ +A
Sbjct: 338 QMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAG 397
Query: 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217
+ ++ EM +G PN+ Y ++ ++ ++ E ++V+++M++ G + + Y+
Sbjct: 398 KLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYS 457
Query: 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277
LL M A G D A +I+ M ++ +P ++ S++T+ + + V A + EM
Sbjct: 458 CLLEMHAGSGQVDSAMKIYNSM-TNAGLRPGLSSYISLLTLLANKRLVDVAGKILLEMKA 516
Query: 278 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-----RFCGCLLNVMTQT 332
G+ ++ + ++ Y K D ++ L + GI ++ F C+ N + +
Sbjct: 517 MGYSVDV-CASDVLMIYIKDASVDLALKWLRFMGSSGIKTNNFIIRQLFESCMKNGLYDS 575
Query: 333 PKEELGKLVECVEKSN-----SKLGYVVKLLLEEQDIE-----------------GDF-- 368
+ L LV K + S L ++V+ E+++ + G F
Sbjct: 576 ARPLLETLVHSAGKVDLVLYTSILAHLVRCQDEDKERQLMSILSATKHKAHAFMCGLFTG 635
Query: 369 ---KKEAT-----ELFNSISKDVKKA----YCNCLIDLCVNLNLLENACKLLELGLTLEV 416
+K+ E + I ++++ + N L++ V + + A + ++ ++
Sbjct: 636 PEQRKQPVLTFVREFYQGIDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKL 695
Query: 417 YTD-IQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHK 475
+ I WSL +++LS+GAAL A+ ++ K + P + + TG
Sbjct: 696 FPKAIVFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKI 755
Query: 476 YSDKGLASV---FESHLKELNAP 495
+ L+SV FE L AP
Sbjct: 756 VIAQMLSSVESPFEVSKVVLRAP 778
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/318 (20%), Positives = 144/318 (45%), Gaps = 10/318 (3%)
Query: 98 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 157
+A+ +ID ++ L+ L+ G +YE M+ + TY ++ ++ ++
Sbjct: 268 KAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLLDGSTYELIIPSLAKSG 327
Query: 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217
R ++++M + L P+++ ++SL+ + G+A + ++ VY EM+ G + S T++
Sbjct: 328 RLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFV 387
Query: 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277
+L+ A G D A ++++MK S +P+ ++ +I + GK+ A +F +M +
Sbjct: 388 SLIDSYAKAGKLDTALRLWDEMKKS-GFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEK 446
Query: 278 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 337
AGF P + L++ + + + D ++ N + G+ P ++++T + L
Sbjct: 447 AGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPG---LSSYISLLTLLANKRL 503
Query: 338 GKLVECVEKSNSKLGYVVK------LLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCL 391
+ + +GY V L++ +D D + S L
Sbjct: 504 VDVAGKILLEMKAMGYSVDVCASDVLMIYIKDASVDLALKWLRFMGSSGIKTNNFIIRQL 563
Query: 392 IDLCVNLNLLENACKLLE 409
+ C+ L ++A LLE
Sbjct: 564 FESCMKNGLYDSARPLLE 581
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 109/220 (49%), Gaps = 1/220 (0%)
Query: 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 168
NA++ +I+ A + +++ + G K + TYNNL+ P++ IY+
Sbjct: 244 NAYNQVIQYLAKAEKLEVAFCCFKKAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYES 303
Query: 169 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 228
M + +TY ++ + ++ + ++++MKE+ ++ S +++++L+ G
Sbjct: 304 MEKTDSLLDGSTYELIIPSLAKSGRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGR 363
Query: 229 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 288
D + +++ +M+ + +P + F S+I + GK+ A +++EM ++GF PN + T
Sbjct: 364 LDTSMKVYMEMQGFGH-RPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYT 422
Query: 289 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 328
+I+ + K+ + + + + + G P CLL +
Sbjct: 423 MIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEM 462
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/273 (21%), Positives = 126/273 (46%), Gaps = 16/273 (5%)
Query: 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP---NWNTYASLLRAYGRARYGEDTLSVYR 202
Y L D + + + ++++++EM + S ++N Y +++ +A E ++
Sbjct: 208 YVVLFDGLNQGRDFVGIQSLFEEMVQDSSSHGDLSFNAYNQVIQYLAKAEKLEVAFCCFK 267
Query: 203 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 262
+ +E G ++ YN L+ + + G +AFEI+E M+ +++ D T+ +I +
Sbjct: 268 KAQESGCKIDTQTYNNLMMLFLNKGLPYKAFEIYESMEKTDSLL-DGSTYELIIPSLAKS 326
Query: 263 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 322
G++ A +F +M E P+ V +SL+ GKA R D ++ + G P
Sbjct: 327 GRLDAAFKLFQQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMF 386
Query: 323 GCLLNVMTQTPKEELG-KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 381
L++ + K + +L + ++KS G+ L IE K E+ ++ K
Sbjct: 387 VSLIDSYAKAGKLDTALRLWDEMKKS----GFRPNFGLYTMIIESHAKSGKLEVAMTVFK 442
Query: 382 DVKKA-------YCNCLIDLCVNLNLLENACKL 407
D++KA +CL+++ +++A K+
Sbjct: 443 DMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKI 475
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 113/242 (46%), Gaps = 6/242 (2%)
Query: 103 KWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAK 157
+ +I PN F+ +I G + +V E+MK G PN+++YN L+D +G
Sbjct: 216 RRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNG 275
Query: 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217
+ ++ + KEM +N +SPN T+ L+ + + ++ V++EM ++ ++ +V YN
Sbjct: 276 KMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYN 335
Query: 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277
+L+ + G EA + + M S+ QP+ T++++I + EA MF +
Sbjct: 336 SLINGLCNGGKISEAISMRDKMVSA-GVQPNLITYNALINGFCKNDMLKEALDMFGSVKG 394
Query: 278 AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEEL 337
G P + LI Y K + DD + GI PD CL+ + + E
Sbjct: 395 QGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEA 454
Query: 338 GK 339
K
Sbjct: 455 AK 456
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 106/214 (49%), Gaps = 4/214 (1%)
Query: 106 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
+ PN F+ LI + N G + V++EM VKPN+I+YN+L++ + + +
Sbjct: 292 VSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAI 351
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
++ +M G+ PN TY +L+ + + ++ L ++ +K +G + +YN L+
Sbjct: 352 SMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAY 411
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283
+G D+ F + E+M+ E PD T++ +I G + A+ +F+++ G P+
Sbjct: 412 CKLGKIDDGFALKEEME-REGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PD 469
Query: 284 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 317
L L++ Y + + L + ++G+ P
Sbjct: 470 LVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKP 503
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 1/173 (0%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
++ LI Y G D + EEM+ G+ P++ TYN L+ + R K ++ ++T
Sbjct: 404 YNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLT 463
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
GL P+ T+ L+ Y R + +EM + G++ YN ++ G
Sbjct: 464 SKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLK 522
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283
A + M+ + + +++ ++ S +GK+ +A + NEMLE G PN
Sbjct: 523 AATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPN 575
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 131/335 (39%), Gaps = 72/335 (21%)
Query: 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 173
L+ Y F+ ++ G K + ++ L+ + + R V+ +YKEM
Sbjct: 159 LVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRK 218
Query: 174 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-----Y 228
+ PN T+ ++ A + V +MK G +V YNTL+ +G Y
Sbjct: 219 IQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMY 278
Query: 229 TDEA---------------------------------FEIFEDMKSSENCQPDSWTFSSM 255
+A ++F++M ++ +P+ +++S+
Sbjct: 279 KADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEM-LDQDVKPNVISYNSL 337
Query: 256 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 315
I GK+SEA +M ++M+ AG +PNL +LI + K + + + G
Sbjct: 338 INGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGA 397
Query: 316 TPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 375
P R L++ + LGK+ + G+ +K EE + EG
Sbjct: 398 VPTTRMYNMLIDAYCK-----LGKIDD---------GFALK---EEMEREG--------- 431
Query: 376 FNSISKDVKKAYCNCLI-DLCVNLNLLENACKLLE 409
I DV NCLI LC N N +E A KL +
Sbjct: 432 ---IVPDV--GTYNCLIAGLCRNGN-IEAAKKLFD 460
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM---GRAKRPWQVK 163
D F L++ Y G + +EM +G+KP +TYN ++ G K ++
Sbjct: 469 DLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMR 528
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
T ++ + L N +Y LL+ Y + ED + EM EKG+ + Y +
Sbjct: 529 TQMEK--ERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEM 586
Query: 224 ADVGYT 229
D G+
Sbjct: 587 VDQGFV 592
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 6/229 (2%)
Query: 92 EKSYDTRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 149
EK YD K IDP+ F S+LI + D +++E M + PN++TYN L
Sbjct: 350 EKLYDEMI---KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 406
Query: 150 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 209
++ +AKR + +++EM+ GL N TY +L+ + +AR ++ V+++M G+
Sbjct: 407 INGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGV 466
Query: 210 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269
++ YNTLL G ++A +FE ++ S+ +P +T++ MI GKV +
Sbjct: 467 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK-MEPTIYTYNIMIEGMCKAGKVEDGW 525
Query: 270 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+F + G +P++ + ++I + + ++ ++ E G PD
Sbjct: 526 DLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDGPLPD 574
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 97/195 (49%), Gaps = 1/195 (0%)
Query: 122 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181
G+ D N+ +M+A ++ N++ Y+ ++D++ + + ++ EM + G+ PN TY
Sbjct: 239 GDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 298
Query: 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241
+SL+ D + +M E+ + +V +N L+ G EA +++++M
Sbjct: 299 SSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEM-I 357
Query: 242 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301
+ PD +T+SS+I ++ EA+ MF M+ PN+ +LI + KA+R D
Sbjct: 358 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRID 417
Query: 302 DVVRALNRLPELGIT 316
+ V + + G+
Sbjct: 418 EGVELFREMSQRGLV 432
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 125/251 (49%), Gaps = 5/251 (1%)
Query: 94 SYDTRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD 151
+++ + E +I+ N +ST+I + D LN++ EM+ GV+PN+ITY++L+
Sbjct: 244 AFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLIS 303
Query: 152 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 211
+ +R + +M + ++PN T+ +L+ A+ + + +Y EM ++ +
Sbjct: 304 CLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDP 363
Query: 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEA 270
+ Y++L+ DEA +FE M S++C P+ T++++I C + ++ E
Sbjct: 364 DIFTYSSLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLINGFCKAK-RIDEGVE 421
Query: 271 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330
+F EM + G N T+LI + +A+ D+ ++ G+ P+ LL+ +
Sbjct: 422 LFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLC 481
Query: 331 QTPKEELGKLV 341
+ K E +V
Sbjct: 482 KNGKLEKAMVV 492
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 104/216 (48%), Gaps = 3/216 (1%)
Query: 105 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 162
+I+PN F+ LI + G +Y+EM + P++ TY++L++ R +
Sbjct: 325 KINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 384
Query: 163 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222
K +++ M PN TY +L+ + +A+ ++ + ++REM ++G+ + Y TL+
Sbjct: 385 KHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHG 444
Query: 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 282
D A +F+ M S+ P+ T+++++ GK+ +A +F + + EP
Sbjct: 445 FFQARDCDNAQMVFKQM-VSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEP 503
Query: 283 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
++ +I+ KA + +D L G+ PD
Sbjct: 504 TIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPD 539
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 1/208 (0%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
F+ L+ FD +++ E+M+ +G+ N+ TYN L++ R + + +M
Sbjct: 88 FNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMM 147
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
G P+ T +SLL Y + D +++ +M E G + + TL+
Sbjct: 148 KLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKAS 207
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 290
EA + + M CQP+ T+ ++ RG + A + N+M A E N+ + +++
Sbjct: 208 EAVALVDRM-VQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTV 266
Query: 291 IQCYGKAQRTDDVVRALNRLPELGITPD 318
I K + DD + + G+ P+
Sbjct: 267 IDSLCKYRHEDDALNLFTEMENKGVRPN 294
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/290 (21%), Positives = 119/290 (41%), Gaps = 8/290 (2%)
Query: 97 TRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 156
T N+ R + +S+LI + + +M + PN++T+N L+D +
Sbjct: 284 TEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKE 343
Query: 157 KRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 216
+ + + +Y EM + P+ TY+SL+ + ++ ++ M K +V Y
Sbjct: 344 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 403
Query: 217 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276
NTL+ DE E+F +M S ++ T++++I A+ +F +M+
Sbjct: 404 NTLINGFCKAKRIDEGVELFREM-SQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMV 462
Query: 277 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 336
G PN+ +L+ K + + + L + P ++ M + K E
Sbjct: 463 SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 522
Query: 337 LGKLVECVEKSNSKLGYVVKLLLEEQDIEG----DFKKEATELFNSISKD 382
G + C S S G +++ I G K+EA LF + +D
Sbjct: 523 DGWDLFC---SLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMRED 569
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 181 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 240
Y +LR + +D + ++ M + S+ +N LL+ A + D + E M+
Sbjct: 53 YREILRNGLHSMKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQ 112
Query: 241 SSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 299
+ +T++ +I C CR ++S A A+ +M++ G+EP++ L+SL+ Y +R
Sbjct: 113 RL-GISHNLYTYNILIN-CFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKR 170
Query: 300 TDDVVRALNRLPELGITPD 318
D V ++++ E+G PD
Sbjct: 171 ISDAVALVDQMVEMGYRPD 189
Score = 33.9 bits (76), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 102 EKWRIDPNAFSTLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
++ +++P ++ I + G AG + +++ + GVKP++I YN ++ R
Sbjct: 497 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLK 556
Query: 160 WQVKTIYKEMTDNGLSPNWNT 180
+ ++++M ++G P+ T
Sbjct: 557 EEADALFRKMREDGPLPDSGT 577
>sp|O81908|PPR2_ARATH Pentatricopeptide repeat-containing protein At1g02060,
chloroplastic OS=Arabidopsis thaliana GN=At1g02060 PE=2
SV=2
Length = 710
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 107/208 (51%), Gaps = 2/208 (0%)
Query: 98 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 157
R N ++ F++LI+ YG AG F + +++ MK +G+ P+++T+N+LL + +
Sbjct: 128 RRSNGCVKLQDRYFNSLIRSYGNAGLFQESVKLFQTMKQMGISPSVLTFNSLLSILLKRG 187
Query: 158 RPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 216
R ++ EM G++P+ T+ +L+ + + ++ ++++M+ V Y
Sbjct: 188 RTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTY 247
Query: 217 NTLLAMCADVGYTDEAFEIFEDM-KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 275
NT++ G A + M K + + P+ ++++++ + ++ EA +F++M
Sbjct: 248 NTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDM 307
Query: 276 LEAGFEPNLFVLTSLIQCYGKAQRTDDV 303
L G +PN +LI+ +A R D++
Sbjct: 308 LSRGLKPNAVTYNTLIKGLSEAHRYDEI 335
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 3/192 (1%)
Query: 95 YDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154
+D R D F+TLI + D ++++M+ P+++TYN ++D +
Sbjct: 196 FDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLC 255
Query: 155 RAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 212
RA + + M + PN +Y +L+R Y + ++ + V+ +M +G++ +
Sbjct: 256 RAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPN 315
Query: 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSS-ENCQPDSWTFSSMITICSCRGKVSEAEAM 271
YNTL+ ++ DE +I + PD+ TF+ +I G + A +
Sbjct: 316 AVTYNTLIKGLSEAHRYDEIKDILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKV 375
Query: 272 FNEMLEAGFEPN 283
F EML P+
Sbjct: 376 FQEMLNMKLHPD 387
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 88/186 (47%), Gaps = 10/186 (5%)
Query: 106 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
+ PN +++TL++ Y D + V+ +M + G+KPN +TYN L+ + A R ++K
Sbjct: 277 VHPNVVSYTTLVRGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIK 336
Query: 164 TIYKEMTD--NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221
I D +P+ T+ L++A+ A + + + V++EM + Y+ L+
Sbjct: 337 DILIGGNDAFTTFAPDACTFNILIKAHCDAGHLDAAMKVFQEMLNMKLHPDSASYSVLIR 396
Query: 222 MCADVGYTDEAFEIFEDMKSSE------NCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 275
D A +F ++ E C+P + ++ M GK +AE +F ++
Sbjct: 397 TLCMRNEFDRAETLFNELFEKEVLLGKDECKPLAAAYNPMFEYLCANGKTKQAEKVFRQL 456
Query: 276 LEAGFE 281
++ G +
Sbjct: 457 MKRGVQ 462
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 54/270 (20%), Positives = 106/270 (39%), Gaps = 40/270 (14%)
Query: 77 YIWVNPKSPRASKLKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 136
Y+ N K+ +A K+ R ++ DP ++ TLI + G F + M
Sbjct: 439 YLCANGKTKQAEKV------FRQLMKRGVQDPPSYKTLITGHCREGKFKPAYELLVLMLR 492
Query: 137 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 196
P++ TY L+D + + + M + P T+ S+L + ++ +
Sbjct: 493 REFVPDLETYELLIDGLLKIGEALLAHDTLQRMLRSSYLPVATTFHSVLAELAKRKFANE 552
Query: 197 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-------------- 242
+ + M EK ++ ++ L ++ + ++AF I + +
Sbjct: 553 SFCLVTLMLEKRIRQNIDLSTQVVRLLFSSAQKEKAFLIVRLLYDNGYLVKMEELLGYLC 612
Query: 243 ENCQ-PDSWTF-------SSMITICSCRGKV---------SEAEAMFNEMLEAGFEPNL- 284
EN + D+ T S M+ I +C + SEA +++NE++E G L
Sbjct: 613 ENRKLLDAHTLVLFCLEKSQMVDIDTCNTVIEGLCKHKRHSEAFSLYNELVELGNHQQLS 672
Query: 285 --FVLTSLIQCYGKAQRTDDVVRALNRLPE 312
VL + ++ GK + V + + L E
Sbjct: 673 CHVVLRNALEAAGKWEELQFVSKRMATLRE 702
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 12/228 (5%)
Query: 107 DPNAFSTLIKLYGTAG---NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
DP ++ +I + + FD ++ + M V N+ T N L+ G +
Sbjct: 132 DPFLYNRIILILSRSNLPDRFDRVRSILDSMVKSNVHGNISTVNILIGFFGNTEDLQMCL 191
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AM 222
+ K+ L N TY LL+AY R+R VY E++ G +L + YN LL A+
Sbjct: 192 RLVKKW---DLKMNSFTYKCLLQAYLRSRDYSKAFDVYCEIRRGGHKLDIFAYNMLLDAL 248
Query: 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 282
D ++A ++FEDMK +C+ D +T++ MI GK EA +FNEM+ G
Sbjct: 249 AKD----EKACQVFEDMKK-RHCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTL 303
Query: 283 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330
N+ +L+Q K + D ++ +R+ E G P++ LLN++
Sbjct: 304 NVVGYNTLMQVLAKGKMVDKAIQVFSRMVETGCRPNEYTYSLLLNLLV 351
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/279 (23%), Positives = 131/279 (46%), Gaps = 16/279 (5%)
Query: 69 KTGSSPKSYIWVNPKSPRASKLKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCL 128
+TG P Y + + ++ + D K + +S L++ G+
Sbjct: 333 ETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQGIYSYLVRTLSKLGHVSEAH 392
Query: 129 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188
++ +M + VK +Y ++L+++ A + + + ++ + G+ + Y ++ A
Sbjct: 393 RLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSAL 452
Query: 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 248
G+ + ++ +MK+ G + YN L+A VG DEA IFE+++ S+ C+PD
Sbjct: 453 GKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSD-CKPD 511
Query: 249 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 308
+++S+I G V EA F EM E G P++ ++L++C+GK +R + A +
Sbjct: 512 IISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVE---MAYS 568
Query: 309 RLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 347
E+ + GC N++T L++C+EK+
Sbjct: 569 LFEEMLVK------GCQPNIVTYNI------LLDCLEKN 595
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 95/171 (55%), Gaps = 5/171 (2%)
Query: 89 KLKEKSY--DTRARNEKWRIDPNAFS--TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 144
KLK+ S+ D + +K P+ F+ LI +G G D +N++EE++ KP++I
Sbjct: 454 KLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDII 513
Query: 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 204
+YN+L++ +G+ + +KEM + GL+P+ TY++L+ +G+ E S++ EM
Sbjct: 514 SYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEM 573
Query: 205 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 255
KG Q ++ YN LL G T EA +++ MK + PDS T++ +
Sbjct: 574 LVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMK-QQGLTPDSITYTVL 623
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 109/213 (51%), Gaps = 7/213 (3%)
Query: 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 168
+++ ++++ AG + + ++ GV + + YN + +G+ K+ + ++++
Sbjct: 408 DSYMSMLESLCGAGKTIEAIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEK 467
Query: 169 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 228
M +G SP+ TY L+ ++GR ++ ++++ E++ + + YN+L+ G
Sbjct: 468 MKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGD 527
Query: 229 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE---AMFNEMLEAGFEPNLF 285
DEA F++M+ + PD T+S T+ C GK E ++F EML G +PN+
Sbjct: 528 VDEAHVRFKEMQ-EKGLNPDVVTYS---TLMECFGKTERVEMAYSLFEEMLVKGCQPNIV 583
Query: 286 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
L+ C K RT + V +++ + G+TPD
Sbjct: 584 TYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPD 616
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 92/184 (50%), Gaps = 1/184 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++T+ G +++E+MK G P++ TYN L+ + GR + I+
Sbjct: 441 DTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIF 500
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+E+ + P+ +Y SL+ G+ ++ ++EM+EKG+ V Y+TL+
Sbjct: 501 EELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQEKGLNPDVVTYSTLMECFGKT 560
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
+ A+ +FE+M + CQP+ T++ ++ G+ +EA ++++M + G P+
Sbjct: 561 ERVEMAYSLFEEM-LVKGCQPNIVTYNILLDCLEKNGRTAEAVDLYSKMKQQGLTPDSIT 619
Query: 287 LTSL 290
T L
Sbjct: 620 YTVL 623
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/217 (22%), Positives = 99/217 (45%), Gaps = 10/217 (4%)
Query: 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 164
R D ++ +I+ G G D + ++ EM G+ N++ YN L+ + + K +
Sbjct: 267 RRDEYTYTIMIRTMGRIGKCDEAVGLFNEMITEGLTLNVVGYNTLMQVLAKGKMVDKAIQ 326
Query: 165 IYKEMTDNGLSPNWNTYA---SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221
++ M + G PN TY+ +LL A G+ + + + + +G +Y+ L+
Sbjct: 327 VFSRMVETGCRPNEYTYSLLLNLLVAEGQLVRLDGVVEISKRYMTQG------IYSYLVR 380
Query: 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 281
+ +G+ EA +F DM S + + ++ SM+ GK EA M +++ E G
Sbjct: 381 TLSKLGHVSEAHRLFCDMWSFP-VKGERDSYMSMLESLCGAGKTIEAIEMLSKIHEKGVV 439
Query: 282 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+ + ++ GK ++ + ++ + G +PD
Sbjct: 440 TDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPD 476
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D +STL++ +G + +++EEM G +PN++TYN LLD + + R + +Y
Sbjct: 546 DVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNGRTAEAVDLY 605
Query: 167 KEMTDNGLSPNWNTYASLLR----AYGRAR 192
+M GL+P+ TY L R ++G++R
Sbjct: 606 SKMKQQGLTPDSITYTVLERLQSVSHGKSR 635
>sp|Q9C9U0|PP118_ARATH Pentatricopeptide repeat-containing protein At1g73710
OS=Arabidopsis thaliana GN=At1g73710 PE=2 SV=1
Length = 991
Score = 92.8 bits (229), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/276 (26%), Positives = 123/276 (44%), Gaps = 42/276 (15%)
Query: 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 164
R D ++ +IK YG A + L++++ MK G P+ TYN+L + + +
Sbjct: 512 RNDVLEYNVMIKAYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQR 571
Query: 165 IYKEMTDNGLSPNWNTYASLLRAYGR-----------------------ARYG------- 194
I EM D+G P TYA+++ +Y R YG
Sbjct: 572 ILAEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFA 631
Query: 195 -----EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 249
E+ + +R M+E G+Q + + +L+ + VG +EA +++ MK SE PD
Sbjct: 632 ESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEG-GPDV 690
Query: 250 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 309
+SM+++C+ G VSEAE++FN + E G ++ +++ Y D+ +
Sbjct: 691 AASNSMLSLCADLGIVSEAESIFNALREKG-TCDVISFATMMYLYKGMGMLDEAIEVAEE 749
Query: 310 LPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 345
+ E G+ D C VM + G+L EC E
Sbjct: 750 MRESGLLSD---CTSFNQVMACYAAD--GQLSECCE 780
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 105/227 (46%), Gaps = 6/227 (2%)
Query: 97 TRARNEKWRID----PNAFSTLIKLYGTAGNFDGCLNV-YEEMKAIGVKPNMITYNNLLD 151
+A E++++D + +I +Y G + V Y + G + +++ YN ++
Sbjct: 464 AKALFERFQLDCVLSSTTLAAVIDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIK 523
Query: 152 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 211
G+AK + +++K M + G P+ TY SL + ++ + EM + G +
Sbjct: 524 AYGKAKLHEKALSLFKGMKNQGTWPDECTYNSLFQMLAGVDLVDEAQRILAEMLDSGCKP 583
Query: 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 271
Y ++A +G +A +++E M+ + +P+ + S+I + G V EA
Sbjct: 584 GCKTYAAMIASYVRLGLLSDAVDLYEAMEKT-GVKPNEVVYGSLINGFAESGMVEEAIQY 642
Query: 272 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
F M E G + N VLTSLI+ Y K ++ R +++ + PD
Sbjct: 643 FRMMEEHGVQSNHIVLTSLIKAYSKVGCLEEARRVYDKMKDSEGGPD 689
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/338 (19%), Positives = 146/338 (43%), Gaps = 42/338 (12%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ L+ L+ AG+ + L Y +++ +G+ P+ +T+ +L + + K +V+ +
Sbjct: 374 DTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMVAEVEAVI 433
Query: 167 KEMTDNGLSPNWNTYASLLRAYG------RAR-----------------------YGEDT 197
EM N + + ++ +++ Y +A+ Y E
Sbjct: 434 AEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQLDCVLSSTTLAAVIDVYAEKG 493
Query: 198 LSV------YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 251
L V Y + G + V YN ++ ++A +F+ MK+ + PD T
Sbjct: 494 LWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKGMKN-QGTWPDECT 552
Query: 252 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 311
++S+ + + V EA+ + EML++G +P ++I Y + D V +
Sbjct: 553 YNSLFQMLAGVDLVDEAQRILAEMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAME 612
Query: 312 ELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK 370
+ G+ P++ G L+N ++ EE + +E+ + ++V L + + +
Sbjct: 613 KTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLE 672
Query: 371 EATELFNSISKDVKK----AYCNCLIDLCVNLNLLENA 404
EA +++ + KD + A N ++ LC +L ++ A
Sbjct: 673 EARRVYDKM-KDSEGGPDVAASNSMLSLCADLGIVSEA 709
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 111/257 (43%), Gaps = 42/257 (16%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
F+TLI LYG AG + N++ EM GV + +T+N ++ T G + +++ K+M
Sbjct: 308 FNTLIDLYGKAGRLNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKME 367
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL------AMCA 224
+ G+SP+ TY LL + A E L YR++++ G+ + +L M A
Sbjct: 368 EKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHRAVLHILCQRKMVA 427
Query: 225 DV-----------------------------GYTDEAFEIFEDMKSSENCQPDSWTFSSM 255
+V G +A +FE + +C S T +++
Sbjct: 428 EVEAVIAEMDRNSIRIDEHSVPVIMQMYVNEGLVVQAKALFERFQL--DCVLSSTTLAAV 485
Query: 256 ITICSCRGKVSEAEAMF-NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314
I + + +G EAE +F + +G ++ +I+ YGKA+ + + + G
Sbjct: 486 IDVYAEKGLWVEAETVFYGKRNMSGQRNDVLEYNVMIKAYGKAKLHEKALSLFKGMKNQG 545
Query: 315 ITPDDRFCGCLLNVMTQ 331
PD+ C N + Q
Sbjct: 546 TWPDE----CTYNSLFQ 558
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 106/250 (42%), Gaps = 14/250 (5%)
Query: 99 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 158
A EK D +F+T++ LY G D + V EEM+ G+ + ++N ++ +
Sbjct: 715 ALREKGTCDVISFATMMYLYKGMGMLDEAIEVAEEMRESGLLSDCTSFNQVMACYAADGQ 774
Query: 159 PWQVKTIYKEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLS----VYREMKEKGM-QLS 212
+ ++ EM + L +W T+ +L + + +S Y E K ++
Sbjct: 775 LSECCELFHEMLVERKLLLDWGTFKTLFTLLKKGGVPSEAVSQLQTAYNEAKPLATPAIT 834
Query: 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 272
TL++ + G A E +++ S E + + ++++I S G + A +
Sbjct: 835 ATLFSAM-------GLYAYALESCQELTSGE-IPREHFAYNAVIYTYSASGDIDMALKAY 886
Query: 273 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 332
M E G EP++ L+ YGKA + V R +RL + P + +
Sbjct: 887 MRMQEKGLEPDIVTQAYLVGIYGKAGMVEGVKRVHSRLTFGELEPSQSLFKAVRDAYVSA 946
Query: 333 PKEELGKLVE 342
+++L +V+
Sbjct: 947 NRQDLADVVK 956
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 68/321 (21%), Positives = 131/321 (40%), Gaps = 43/321 (13%)
Query: 69 KTGSSPKSYIWVNPKSPRA-SKLKEKSYDTRARNEKWRIDPN--AFSTLIKLYGTAGNFD 125
KTG P ++ + + A S + E++ E+ + N ++LIK Y G +
Sbjct: 613 KTGVKPNEVVYGSLINGFAESGMVEEAIQYFRMMEEHGVQSNHIVLTSLIKAYSKVGCLE 672
Query: 126 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185
VY++MK P++ N++L + ++I+ + + G + + ++A+++
Sbjct: 673 EARRVYDKMKDSEGGPDVAASNSMLSLCADLGIVSEAESIFNALREKG-TCDVISFATMM 731
Query: 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 245
Y ++ + V EM+E G+ T +N ++A A G E E+F +M
Sbjct: 732 YLYKGMGMLDEAIEVAEEMRESGLLSDCTSFNQVMACYAADGQLSECCELFHEMLVERKL 791
Query: 246 QPDSWTFSSMITICSCRGKVSEA----EAMFNEM-------------------------- 275
D TF ++ T+ G SEA + +NE
Sbjct: 792 LLDWGTFKTLFTLLKKGGVPSEAVSQLQTAYNEAKPLATPAITATLFSAMGLYAYALESC 851
Query: 276 --LEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 332
L +G P F ++I Y + D ++A R+ E G+ PD L+ + +
Sbjct: 852 QELTSGEIPREHFAYNAVIYTYSASGDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGK- 910
Query: 333 PKEELGKLVECVEKSNSKLGY 353
+VE V++ +S+L +
Sbjct: 911 -----AGMVEGVKRVHSRLTF 926
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 96/242 (39%), Gaps = 54/242 (22%)
Query: 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 200
PN+I YN +L +GRA + +++ + EM NG+ P NTY L+ YG+A ++ L
Sbjct: 143 PNVIHYNIVLRALGRAGKWDELRLCWIEMAHNGVLPTNNTYGMLVDVYGKAGLVKEALLW 202
Query: 201 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE---------DMKS---------- 241
+ M ++ T++ + + G D A F+ D+ S
Sbjct: 203 IKHMGQRMHFPDEVTMATVVRVFKNSGEFDRADRFFKGWCAGKVDLDLDSIDDFPKNGSA 262
Query: 242 ------------------SENCQPDSWTFSS-----------------MITICSCRGKVS 266
+ N S F+S +I + G+++
Sbjct: 263 QSPVNLKQFLSMELFKVGARNPIEKSLHFASGSDSSPRKPRLTSTFNTLIDLYGKAGRLN 322
Query: 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 326
+A +F+EML++G + ++I G + L ++ E GI+PD + LL
Sbjct: 323 DAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTYNILL 382
Query: 327 NV 328
++
Sbjct: 383 SL 384
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%)
Query: 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 169
A++ +I Y +G+ D L Y M+ G++P+++T L+ G+A VK ++ +
Sbjct: 865 AYNAVIYTYSASGDIDMALKAYMRMQEKGLEPDIVTQAYLVGIYGKAGMVEGVKRVHSRL 924
Query: 170 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 204
T L P+ + + ++ AY A + V +EM
Sbjct: 925 TFGELEPSQSLFKAVRDAYVSANRQDLADVVKKEM 959
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 1/185 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D F+T I + G + + ++ +M+ GV PN++T+N ++D +G R +
Sbjct: 272 DVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFK 331
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
++M + G+ P TY+ L++ RA+ D V +EM +KG +V +YN L+ +
Sbjct: 332 EKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEA 391
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G ++A EI +D+ S+ S T++++I G+ AE + EML GF N
Sbjct: 392 GSLNKAIEI-KDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGS 450
Query: 287 LTSLI 291
TS+I
Sbjct: 451 FTSVI 455
Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 101/212 (47%), Gaps = 1/212 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D +S LI + + +++ K G+ P++ TY+ ++D +A+R + + +
Sbjct: 587 DNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFF 646
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
EM + PN Y L+RAY R+ L + +MK KG+ + Y +L+ + +
Sbjct: 647 DEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSII 706
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
+EA +FE+M+ E +P+ + ++++I G++ + E + EM PN
Sbjct: 707 SRVEEAKLLFEEMR-MEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKIT 765
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
T +I Y + + R LN + E GI PD
Sbjct: 766 YTVMIGGYARDGNVTEASRLLNEMREKGIVPD 797
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 1/166 (0%)
Query: 131 YEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190
++EM + V+PN + YN+L+ R+ R + ++M G+SPN TY SL++
Sbjct: 646 FDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSI 705
Query: 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250
E+ ++ EM+ +G++ +V Y L+ +G + + +M S +N P+
Sbjct: 706 ISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHS-KNVHPNKI 764
Query: 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 296
T++ MI + G V+EA + NEM E G P+ I Y K
Sbjct: 765 TYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLK 810
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 100/252 (39%), Gaps = 34/252 (13%)
Query: 101 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 160
N+ + +D + L+ AG D + +E+ G + ++YN L+ K+
Sbjct: 511 NKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLD 570
Query: 161 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220
+ EM GL P+ TY+ L+ E+ + + + K GM V Y+ ++
Sbjct: 571 EAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMI 630
Query: 221 AMCADVGYTDEAFEIFEDMKSS----------------------------------ENCQ 246
C T+E E F++M S +
Sbjct: 631 DGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGIS 690
Query: 247 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 306
P+S T++S+I S +V EA+ +F EM G EPN+F T+LI YGK + V
Sbjct: 691 PNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECL 750
Query: 307 LNRLPELGITPD 318
L + + P+
Sbjct: 751 LREMHSKNVHPN 762
Score = 72.4 bits (176), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 3/165 (1%)
Query: 106 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
+ PN ++ LI+ Y +G L + E+MK G+ PN TY +L+ M R + K
Sbjct: 654 VQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAK 713
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
+++EM GL PN Y +L+ YG+ + REM K + + Y ++
Sbjct: 714 LLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGY 773
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268
A G EA + +M+ + PDS T+ I +G V EA
Sbjct: 774 ARDGNVTEASRLLNEMR-EKGIVPDSITYKEFIYGYLKQGGVLEA 817
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 103/206 (50%), Gaps = 5/206 (2%)
Query: 114 LIKLYGTAGNFDGC---LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
LI++Y T DGC L+V+ + G+ P+ T N LL ++ RA + + ++
Sbjct: 207 LIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAF-DVV 265
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
G+SP+ + + + A+ + E+ + ++ +M+E G+ +V +NT++ G D
Sbjct: 266 CKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYD 325
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 290
EAF +F++ +P T+S ++ + ++ +A + EM + GF PN+ V +L
Sbjct: 326 EAF-MFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNL 384
Query: 291 IQCYGKAQRTDDVVRALNRLPELGIT 316
I + +A + + + + G++
Sbjct: 385 IDSFIEAGSLNKAIEIKDLMVSKGLS 410
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 105/272 (38%), Gaps = 34/272 (12%)
Query: 104 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
+ ++ +F+++I L + FD L EM + P L+ + + + +
Sbjct: 444 FNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAL 503
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
++ + + G + T +LL A ++ + +E+ +G + YNTL++ C
Sbjct: 504 ELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGC 563
Query: 224 ADVGYTDEAFEIFEDM-----------------------KSSENCQ-----------PDS 249
DEAF ++M K E Q PD
Sbjct: 564 CGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDV 623
Query: 250 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 309
+T+S MI C + E + F+EM+ +PN V LI+ Y ++ R +
Sbjct: 624 YTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRED 683
Query: 310 LPELGITPDDRFCGCLLNVMTQTPKEELGKLV 341
+ GI+P+ L+ M+ + E KL+
Sbjct: 684 MKHKGISPNSATYTSLIKGMSIISRVEEAKLL 715
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 87/208 (41%), Gaps = 1/208 (0%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
+S L+K A V +EM G PN+I YNNL+D+ A + I M
Sbjct: 346 YSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMV 405
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
GLS +TY +L++ Y + ++ + +EM G ++ + +++ + D
Sbjct: 406 SKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFD 465
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 290
A +M N P +++I+ GK S+A ++ + L GF + +L
Sbjct: 466 SALRFVGEM-LLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNAL 524
Query: 291 IQCYGKAQRTDDVVRALNRLPELGITPD 318
+ +A + D+ R + G D
Sbjct: 525 LHGLCEAGKLDEAFRIQKEILGRGCVMD 552
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 106 IDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
I PN+ +++LIK + ++EEM+ G++PN+ Y L+D G+ + +V+
Sbjct: 689 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVE 748
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
+ +EM + PN TY ++ Y R + + EM+EKG+ Y +
Sbjct: 749 CLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGY 808
Query: 224 ADVGYTDEAFE 234
G EAF+
Sbjct: 809 LKQGGVLEAFK 819
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 71/154 (46%), Gaps = 2/154 (1%)
Query: 165 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224
++ + + G+ P+ T LL + RA + + ++ KG+ V L+ T +
Sbjct: 226 VFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAF-DVVCKGVSPDVYLFTTAINAFC 284
Query: 225 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 284
G +EA ++F M+ + P+ TF+++I G+ EA +M+E G EP L
Sbjct: 285 KGGKVEEAVKLFSKMEEA-GVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTL 343
Query: 285 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+ L++ +A+R D L + + G P+
Sbjct: 344 ITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPN 377
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 197 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 256
L V+ + KGM S T N LL + E F+ + + PD + F++ I
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVV--CKGVSPDVYLFTTAI 280
Query: 257 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 316
GKV EA +F++M EAG PN+ ++I G R D+ ++ E G+
Sbjct: 281 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGME 340
Query: 317 P 317
P
Sbjct: 341 P 341
>sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222
OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1
Length = 831
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 1/222 (0%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D F+ +I +GN D + ++E+MK G KP T+N L+ G+ + + +
Sbjct: 388 DTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLL 447
Query: 167 KEM-TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225
M D L PN T L++A+ R E+ ++ +M+ G++ V +NTL A
Sbjct: 448 DMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYAR 507
Query: 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 285
+G T A ++ +P+ T +++ GK+ EA F M E G PNLF
Sbjct: 508 IGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFYRMKELGVHPNLF 567
Query: 286 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 327
V SLI+ + D V ++ + E G+ PD L+N
Sbjct: 568 VFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMN 609
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 113/236 (47%), Gaps = 4/236 (1%)
Query: 86 RASKLKEKS--YDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 143
+ KL+E S D R+E + + + L++ + + N+ +M++ GVKP++
Sbjct: 436 KIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDV 495
Query: 144 ITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 202
+T+N L R + I M N + PN T +++ Y E+ L +
Sbjct: 496 VTFNTLAKAYARIGSTCTAEDMIIPRMLHNKVKPNVRTCGTIVNGYCEEGKMEEALRFFY 555
Query: 203 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 262
MKE G+ ++ ++N+L+ ++ D E+ D+ +PD TFS+++ S
Sbjct: 556 RMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVV-DLMEEFGVKPDVVTFSTLMNAWSSV 614
Query: 263 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
G + E ++ +MLE G +P++ + L + Y +A + + LN++ + G+ P+
Sbjct: 615 GDMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPN 670
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 90/171 (52%), Gaps = 2/171 (1%)
Query: 149 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 208
L++ + RP + +I+ + + G P+ TY +L+ A R ++ LS+ ++++ G
Sbjct: 325 LMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNG 384
Query: 209 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268
++ L+N ++ ++ G D+A +IFE MK S C+P + TF+++I GK+ E+
Sbjct: 385 LKPDTILFNAIINASSESGNLDQAMKIFEKMKES-GCKPTASTFNTLIKGYGKIGKLEES 443
Query: 269 EAMFNEML-EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+ + ML + +PN L+Q + ++ ++ + ++ G+ PD
Sbjct: 444 SRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPD 494
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 100/202 (49%), Gaps = 5/202 (2%)
Query: 138 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 197
G KP++ITY L+ + R K + ++ ++ NGL P+ + +++ A + +
Sbjct: 349 GHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQA 408
Query: 198 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257
+ ++ +MKE G + + + +NTL+ +G +E+ + + M E QP+ T + ++
Sbjct: 409 MKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQ 468
Query: 258 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT---DDVVRALNRLPELG 314
+ K+ EA + +M G +P++ +L + Y + T +D++ + R+
Sbjct: 469 AWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAEDMI--IPRMLHNK 526
Query: 315 ITPDDRFCGCLLNVMTQTPKEE 336
+ P+ R CG ++N + K E
Sbjct: 527 VKPNVRTCGTIVNGYCEEGKME 548
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 83/159 (52%), Gaps = 2/159 (1%)
Query: 100 RNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 157
R ++ + PN F++LIK + + DG V + M+ GVKP+++T++ L++
Sbjct: 556 RMKELGVHPNLFVFNSLIKGFLNINDMDGVGEVVDLMEEFGVKPDVVTFSTLMNAWSSVG 615
Query: 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217
+ + IY +M + G+ P+ + ++ L + Y RA E + +M++ G++ +V +Y
Sbjct: 616 DMKRCEEIYTDMLEGGIDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYT 675
Query: 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 256
+++ G +A ++++ M P+ T+ ++I
Sbjct: 676 QIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYETLI 714
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 106 IDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD---TMGRAKRPW 160
IDP+ AFS L K Y AG + + +M+ GV+PN++ Y ++ + G K+
Sbjct: 632 IDPDIHAFSILAKGYARAGEPEKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAM 691
Query: 161 QVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 209
QV YK+M GLSPN TY +L+ +G A+ + ++M+ K +
Sbjct: 692 QV---YKKMCGIVGLSPNLTTYETLIWGFGEAKQPWKAEELLKDMEGKNV 738
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 92 EKSYDTRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNMITYNN 148
EK+ + K+ + PN ++ +I + +AG + VY++M I G+ PN+ TY
Sbjct: 653 EKAEQILNQMRKFGVRPNVVIYTQIISGWCSAGEMKKAMQVYKKMCGIVGLSPNLTTYET 712
Query: 149 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT 180
L+ G AK+PW+ + + K+M + P T
Sbjct: 713 LIWGFGEAKQPWKAEELLKDMEGKNVVPTRKT 744
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 262 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 321
RG+ EA ++FN ++E G +P+L T+L+ + + ++ ++++ + G+ PD
Sbjct: 332 RGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTIL 391
Query: 322 CGCLLNVMTQTPK-EELGKLVECVEKSNSK 350
++N +++ ++ K+ E +++S K
Sbjct: 392 FNAIINASSESGNLDQAMKIFEKMKESGCK 421
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 123/266 (46%), Gaps = 12/266 (4%)
Query: 104 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
+ ++ + +S LI G + ++++ +M G KPN++ Y+ L+D + R +P + K
Sbjct: 358 YHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAK 417
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
I M +G PN TY+SL++ + + E+ + V++EM + G + Y+ L+
Sbjct: 418 EILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGL 477
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML---EAGF 280
VG EA ++ M + +PD+ +SS+I G + A +++EML E
Sbjct: 478 CGVGRVKEAMMVWSKMLTI-GIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKS 536
Query: 281 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKL 340
+P++ L+ + V LN + + G PD C LN +++
Sbjct: 537 QPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNS----- 591
Query: 341 VECVEKSNSKLGYVVKLLLEEQDIEG 366
+K S L +V LL+ Q + G
Sbjct: 592 ---CDKGRSFLEELVVRLLKRQRVSG 614
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 103/213 (48%), Gaps = 3/213 (1%)
Query: 108 PN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 165
PN ++TLI G D +++ E M + PN +TY L++ + + +R +
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRL 349
Query: 166 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225
M + G N + Y+ L+ + E+ +S++R+M EKG + ++ +Y+ L+
Sbjct: 350 LSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCR 409
Query: 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 285
G +EA EI M +S C P+++T+SS++ G EA ++ EM + G N F
Sbjct: 410 EGKPNEAKEILNRMIAS-GCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKF 468
Query: 286 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+ LI R + + +++ +GI PD
Sbjct: 469 CYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPD 501
Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 103/215 (47%), Gaps = 2/215 (0%)
Query: 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 167
P ++ LI G+ + + M G PN +TYN L+ + + + ++ +
Sbjct: 257 PVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLE 316
Query: 168 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227
M + PN TY +L+ + R D + + M+E+G L+ +Y+ L++ G
Sbjct: 317 RMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEG 376
Query: 228 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 287
+EA ++ M + + C+P+ +S ++ GK +EA+ + N M+ +G PN +
Sbjct: 377 KAEEAMSLWRKM-AEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTY 435
Query: 288 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC 322
+SL++ + K ++ V+ + + G + ++FC
Sbjct: 436 SSLMKGFFKTGLCEEAVQVWKEMDKTGCS-RNKFC 469
Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 93/220 (42%), Gaps = 3/220 (1%)
Query: 101 NEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 158
N I PN +F+ +IK D + V+ M P+ TY L+D + + +R
Sbjct: 178 NMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEER 237
Query: 159 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 218
+ + EM G SP+ Y L+ + + M KG + YNT
Sbjct: 238 IDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNT 297
Query: 219 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278
L+ G D+A + E M SS+ C P+ T+ ++I + + ++A + + M E
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSK-CIPNDVTYGTLINGLVKQRRATDAVRLLSSMEER 356
Query: 279 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
G+ N + + LI K + ++ + ++ E G P+
Sbjct: 357 GYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPN 396
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 92.4 bits (228), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 4/243 (1%)
Query: 103 KWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 160
K I+P+ F+ LI ++ GN D +Y+EM V PN +TYN++++ + R +
Sbjct: 239 KRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLY 298
Query: 161 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220
K + M G PN TY +L+ + + R ++ + +++ M +G + YNTL+
Sbjct: 299 DAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLI 358
Query: 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280
VG A +IF M S PD T ++ G++ A F++M E+
Sbjct: 359 HGYCQVGKLRVALDIFCWM-VSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEK 417
Query: 281 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPKEELGK 339
+ +I KA + + RLP G+ PD R + +L + P+ E +
Sbjct: 418 YIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADE 477
Query: 340 LVE 342
L+
Sbjct: 478 LIR 480
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 7/215 (3%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D +F+ LI + L+V +M +G +P+++T+ +LL R ++
Sbjct: 105 DLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLV 164
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGE--DTLSVYREMKEKGMQLSVTLYNTLL-AMC 223
M +G PN Y +L+ G + GE L + EM++KG+ V YNTLL +C
Sbjct: 165 ILMVKSGYEPNVVVYNTLID--GLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLC 222
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283
++D A + + MK S N PD TF+++I + +G + EA+ ++ EM+++ +PN
Sbjct: 223 YSGRWSDAARMLRDMMKRSIN--PDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPN 280
Query: 284 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
S+I R D + + + G P+
Sbjct: 281 NVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPN 315
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 102/215 (47%), Gaps = 5/215 (2%)
Query: 107 DPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 164
+PN ++TLI G + L + EM+ G+ +++TYN LL + + R
Sbjct: 173 EPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAAR 232
Query: 165 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224
+ ++M ++P+ T+ +L+ + + ++ +Y+EM + + + YN+++
Sbjct: 233 MLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLC 292
Query: 225 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGFEPN 283
G +A + F D+ +S+ C P+ T++++I+ C R V E +F M GF +
Sbjct: 293 MHGRLYDAKKTF-DLMASKGCFPNVVTYNTLISGFCKFR-MVDEGMKLFQRMSCEGFNAD 350
Query: 284 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+F +LI Y + + + + +TPD
Sbjct: 351 IFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPD 385
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 93/209 (44%), Gaps = 1/209 (0%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
F+ L+ ++ + ++M+ G+ ++ ++ L+ R R ++ +M
Sbjct: 74 FTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMM 133
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
G P+ T+ SLL + D S+ M + G + +V +YNTL+ G +
Sbjct: 134 KLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELN 193
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 290
A E+ +M+ + D T+++++T G+ S+A M +M++ P++ T+L
Sbjct: 194 IALELLNEME-KKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTAL 252
Query: 291 IQCYGKAQRTDDVVRALNRLPELGITPDD 319
I + K D+ + + + P++
Sbjct: 253 IDVFVKQGNLDEAQELYKEMIQSSVDPNN 281
Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 1/195 (0%)
Query: 124 FDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 183
F+ ++ EM P+++ + LL +R V ++M G+S + ++
Sbjct: 52 FEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTI 111
Query: 184 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 243
L+ + R LSV +M + G + S+ + +LL V +AF + M S
Sbjct: 112 LIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS- 170
Query: 244 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 303
+P+ ++++I G+++ A + NEM + G ++ +L+ + R D
Sbjct: 171 GYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDA 230
Query: 304 VRALNRLPELGITPD 318
R L + + I PD
Sbjct: 231 ARMLRDMMKRSINPD 245
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 103/209 (49%), Gaps = 1/209 (0%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
F+ LI G +++ E+M G +PN ++YN LL + K+ + + M
Sbjct: 347 FNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMV 406
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
G P+ TY ++L A + ED + + ++ KG + YNT++ A G T
Sbjct: 407 SRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTG 466
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 290
+A ++ ++M+ +++ +PD+ T+SS++ S GKV EA F+E G PN S+
Sbjct: 467 KAIKLLDEMR-AKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSI 525
Query: 291 IQCYGKAQRTDDVVRALNRLPELGITPDD 319
+ K+++TD + L + G P++
Sbjct: 526 MLGLCKSRQTDRAIDFLVFMINRGCKPNE 554
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 4/212 (1%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ +I Y AG + L+V + M V P+++TYN +L ++ + + Q +
Sbjct: 171 DVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGKLKQAMEVL 227
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
M P+ TY L+ A R + + EM+++G V YN L+
Sbjct: 228 DRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKE 287
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
G DEA + DM SS CQP+ T + ++ G+ +AE + +ML GF P++
Sbjct: 288 GRLDEAIKFLNDMPSS-GCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVT 346
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
LI + + L ++P+ G P+
Sbjct: 347 FNILINFLCRKGLLGRAIDILEKMPQHGCQPN 378
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
++T+I AG + + +EM+A +KP+ ITY++L+ + R + + + E
Sbjct: 452 YNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFE 511
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
G+ PN T+ S++ ++R + + M +G + + T Y L+ A G
Sbjct: 512 RMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAK 571
Query: 231 EAFEIFEDM 239
EA E+ ++
Sbjct: 572 EALELLNEL 580
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 71/172 (41%), Gaps = 4/172 (2%)
Query: 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 206
NN L M R + + M +G P+ +L+R + R + ++
Sbjct: 106 NNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEG 165
Query: 207 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266
G V YN +++ G + A + + M S PD T+++++ GK+
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS----PDVVTYNTILRSLCDSGKLK 221
Query: 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+A + + ML+ P++ T LI+ + ++ L+ + + G TPD
Sbjct: 222 QAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPD 273
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 52/110 (47%)
Query: 100 RNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
R + + D +S+L+ G D + + E + +G++PN +T+N+++ + ++++
Sbjct: 476 RAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQT 535
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 209
+ M + G PN +Y L+ ++ L + E+ KG+
Sbjct: 536 DRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 2/231 (0%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
F+ +K + A + ++E MK K + T N LLD++GRAK + + ++ ++
Sbjct: 231 FTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLK 290
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
+ +PN TY LL + R R + ++ +M + G++ + +N +L
Sbjct: 291 ER-FTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKS 349
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 290
+A ++F MKS C P+ +++ MI + + A F++M+++G +P+ V T L
Sbjct: 350 DAIKLFHVMKSKGPC-PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCL 408
Query: 291 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 341
I +G ++ D V L + E G PD + L+ +M E G +
Sbjct: 409 ITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 459
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 105/220 (47%), Gaps = 5/220 (2%)
Query: 103 KWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 160
K R PN + + L G N ++ +M G+KP+++ +N +L+ + R+ +
Sbjct: 290 KERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKS 349
Query: 161 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220
++ M G PN +Y ++R + + E + + +M + G+Q +Y L+
Sbjct: 350 DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLI 409
Query: 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280
D +E+ ++M+ + PD T++++I + + + ++N+M++
Sbjct: 410 TGFGTQKKLDTVYELLKEMQEKGH-PPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEI 468
Query: 281 EPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPDD 319
EP++ +++ Y A R ++ RA+ + + + GI PDD
Sbjct: 469 EPSIHTFNMIMKSYFVA-RNYEMGRAVWDEMIKKGICPDD 507
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 1/201 (0%)
Query: 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 200
PNM+TY LL+ R + + I+ +M D+GL P+ + +L R+ D + +
Sbjct: 295 PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKL 354
Query: 201 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 260
+ MK KG +V Y ++ + A E F+DM S QPD+ ++ +IT
Sbjct: 355 FHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITGFG 413
Query: 261 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320
+ K+ + EM E G P+ +LI+ + + R N++ + I P
Sbjct: 414 TQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIH 473
Query: 321 FCGCLLNVMTQTPKEELGKLV 341
++ E+G+ V
Sbjct: 474 TFNMIMKSYFVARNYEMGRAV 494
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ LI +GT D + +EM+ G P+ TYN L+ M K P IY
Sbjct: 401 DAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIY 460
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+M N + P+ +T+ ++++Y AR E +V+ EM +KG+ Y L+
Sbjct: 461 NKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISE 520
Query: 227 GYTDEAFEIFEDM 239
G + EA E+M
Sbjct: 521 GKSREACRYLEEM 533
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ LIKL + +Y +M ++P++ T+N ++ + A+ + ++
Sbjct: 436 DGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVW 495
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
EM G+ P+ N+Y L+R + EM +KGM+ + YN A
Sbjct: 496 DEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRG 555
Query: 227 GYTDEAFEIFEDM 239
G EIFE++
Sbjct: 556 GQP----EIFEEL 564
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 17/154 (11%)
Query: 172 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 231
G + + TY S++ + R E +SV EM KG+ L++ + + A +
Sbjct: 188 QGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKK 246
Query: 232 AFEIFEDMKSSENCQPDSWTFSSMITICSC------RGKVS-EAEAMFNEMLEAGFEPNL 284
A IFE MK + F + +C R K+ EA+ +F+++ E F PN+
Sbjct: 247 AVGIFELMK--------KYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER-FTPNM 297
Query: 285 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
T L+ + + + + R N + + G+ PD
Sbjct: 298 MTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPD 331
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 135/309 (43%), Gaps = 19/309 (6%)
Query: 42 QKRSVSLQETQSSNPTKHSQNPQYPHGKTGSSPKSYIWVNPKSPRASKLKEKSYDTR-AR 100
Q R V LQ P H+ N + HG W +A++++E + + +
Sbjct: 208 QARVVLLQLKSHITPNAHTFNI-FIHG----------WC-----KANRVEEALWTIQEMK 251
Query: 101 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 160
+R +++T+I+ Y F + EM+A G PN ITY ++ ++ K
Sbjct: 252 GHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFE 311
Query: 161 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR-EMKEKGMQLSVTLYNTL 219
+ + M +G P+ Y L+ RA E+ V+R EM E G+ ++ + YN++
Sbjct: 312 EALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINTSTYNSM 371
Query: 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML-EA 278
+AM D+A E+ ++M+SS C PD T+ ++ C RG V E + EM+ +
Sbjct: 372 IAMYCHHDEEDKAIELLKEMESSNLCNPDVHTYQPLLRSCFKRGDVVEVGKLLKEMVTKH 431
Query: 279 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 338
+ T LIQ +A + + ITP R C LL + + E
Sbjct: 432 HLSLDESTYTFLIQRLCRANMCEWAYCLFEEMISQDITPRHRTCLLLLEEVKKKNMHESA 491
Query: 339 KLVECVEKS 347
+ +E + K+
Sbjct: 492 ERIEHIMKT 500
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 38/243 (15%)
Query: 138 GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 197
G K + Y+ +D +G+AK+ ++K + M + L NT A ++R + A E+
Sbjct: 116 GHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGDKL-VTLNTVAKIMRRFAGAGEWEEA 174
Query: 198 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257
+ ++ + E G++ + N LL ++A + +KS + P++ TF+ I
Sbjct: 175 VGIFDRLGEFGLEKNTESMNLLLDTLCKEKRVEQARVVLLQLKS--HITPNAHTFNIFIH 232
Query: 258 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK--------------------- 296
+V EA EM GF P + T++I+CY +
Sbjct: 233 GWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRCYCQQFEFIKVYEMLSEMEANGSPP 292
Query: 297 -------------AQRT-DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVE 342
AQ+ ++ +R R+ G PD F CL++ + + + E + V
Sbjct: 293 NSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVF 352
Query: 343 CVE 345
VE
Sbjct: 353 RVE 355
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 107/229 (46%), Gaps = 8/229 (3%)
Query: 91 KEKSYDTRARNEKWRIDPNAFS-------TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 143
KE+ + R K +D + FS TLIK Y G+ G L + EM G+K N
Sbjct: 392 KEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNT 451
Query: 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 203
IT N +LD + + ++ + + G + TY +L+ + R E L ++ E
Sbjct: 452 ITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDE 511
Query: 204 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263
MK+ + +V+ +N+L+ G T+ A E F+++ S PD TF+S+I G
Sbjct: 512 MKKVKITPTVSTFNSLIGGLCHHGKTELAMEKFDELAES-GLLPDDSTFNSIILGYCKEG 570
Query: 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 312
+V +A +NE ++ F+P+ + L+ K T+ + N L E
Sbjct: 571 RVEKAFEFYNESIKHSFKPDNYTCNILLNGLCKEGMTEKALNFFNTLIE 619
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 3/215 (1%)
Query: 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA-IGVKPNMITYNNLLDTMGRAKRPWQVKT 164
++ F+ L+ Y G + L + E M + V P+ +TYN +L M + R +K
Sbjct: 202 LNVQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKE 261
Query: 165 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224
+ +M NGL PN TY +L+ Y + ++ + MK+ + + YN L+
Sbjct: 262 LLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLC 321
Query: 225 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 284
+ G E E+ + MKS + QPD T++++I C G EA + +M G + N
Sbjct: 322 NAGSMREGLELMDAMKSLK-LQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQ 380
Query: 285 FVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITPD 318
++ K ++ + V R + L ++ G +PD
Sbjct: 381 VTHNISLKWLCKEEKREAVTRKVKELVDMHGFSPD 415
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/270 (25%), Positives = 117/270 (43%), Gaps = 55/270 (20%)
Query: 103 KWRIDPNAFSTLIKLYGTAGNFDGCL---------NVYEEMKAIGVKPNMITYNNLLDTM 153
K + D ++TLI DGC + E+M+ GVK N +T+N L +
Sbjct: 340 KLQPDVVTYNTLI---------DGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWL 390
Query: 154 GRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 212
+ ++ V KE+ D +G SP+ TY +L++AY + L + REM +KG++++
Sbjct: 391 CKEEKREAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMN 450
Query: 213 VTLYNTLL-AMCAD-----------------------------VGY-----TDEAFEIFE 237
NT+L A+C + +G+ ++A E+++
Sbjct: 451 TITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWD 510
Query: 238 DMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297
+MK + P TF+S+I GK A F+E+ E+G P+ S+I Y K
Sbjct: 511 EMKKVK-ITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDDSTFNSIILGYCKE 569
Query: 298 QRTDDVVRALNRLPELGITPDDRFCGCLLN 327
R + N + PD+ C LLN
Sbjct: 570 GRVEKAFEFYNESIKHSFKPDNYTCNILLN 599
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 96/210 (45%), Gaps = 5/210 (2%)
Query: 99 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 158
A + +D + TLI + + L +++EMK + + P + T+N+L+ + +
Sbjct: 477 AHKRGFIVDEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGK 536
Query: 159 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 218
+ E+ ++GL P+ +T+ S++ Y + E Y E + + N
Sbjct: 537 TELAMEKFDELAESGLLPDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNI 596
Query: 219 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278
LL G T++A F + E + D+ T+++MI+ K+ EA + +EM E
Sbjct: 597 LLNGLCKEGMTEKALNFFNTL--IEEREVDTVTYNTMISAFCKDKKLKEAYDLLSEMEEK 654
Query: 279 GFEPNLFVLTSLIQCY---GKAQRTDDVVR 305
G EP+ F S I GK TD++++
Sbjct: 655 GLEPDRFTYNSFISLLMEDGKLSETDELLK 684
Score = 55.8 bits (133), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 7/166 (4%)
Query: 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED-----TLSVYREMKEKGMQLS 212
+P I+++M L PN T +LL G RY V+ +M + G+ L+
Sbjct: 146 KPHVALQIFQKMIRLKLKPNLLTCNTLL--IGLVRYPSSFSISSAREVFDDMVKIGVSLN 203
Query: 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 272
V +N L+ G ++A + E M S PD+ T+++++ S +G++S+ + +
Sbjct: 204 VQTFNVLVNGYCLEGKLEDALGMLERMVSEFKVNPDNVTYNTILKAMSKKGRLSDLKELL 263
Query: 273 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+M + G PN +L+ Y K + + + + + + PD
Sbjct: 264 LDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPD 309
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 2/231 (0%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
F+ +K + A + ++E MK K + T N LLD++GRAK + + ++ ++
Sbjct: 232 FTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLK 291
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
+ +PN TY LL + R R + ++ +M + G++ + +N +L
Sbjct: 292 ER-FTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKS 350
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 290
+A ++F MKS C P+ +++ MI + + A F++M+++G +P+ V T L
Sbjct: 351 DAIKLFHVMKSKGPC-PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCL 409
Query: 291 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV 341
I +G ++ D V L + E G PD + L+ +M E G +
Sbjct: 410 ITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 460
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 105/220 (47%), Gaps = 5/220 (2%)
Query: 103 KWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 160
K R PN + + L G N ++ +M G+KP+++ +N +L+ + R+ +
Sbjct: 291 KERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKS 350
Query: 161 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220
++ M G PN +Y ++R + + E + + +M + G+Q +Y L+
Sbjct: 351 DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLI 410
Query: 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280
D +E+ ++M+ + PD T++++I + + + ++N+M++
Sbjct: 411 TGFGTQKKLDTVYELLKEMQEKGH-PPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEI 469
Query: 281 EPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPDD 319
EP++ +++ Y A R ++ RA+ + + + GI PDD
Sbjct: 470 EPSIHTFNMIMKSYFVA-RNYEMGRAVWDEMIKKGICPDD 508
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 87/201 (43%), Gaps = 1/201 (0%)
Query: 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 200
PNM+TY LL+ R + + I+ +M D+GL P+ + +L R+ D + +
Sbjct: 296 PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKL 355
Query: 201 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 260
+ MK KG +V Y ++ + A E F+DM S QPD+ ++ +IT
Sbjct: 356 FHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITGFG 414
Query: 261 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320
+ K+ + EM E G P+ +LI+ + + R N++ + I P
Sbjct: 415 TQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIH 474
Query: 321 FCGCLLNVMTQTPKEELGKLV 341
++ E+G+ V
Sbjct: 475 TFNMIMKSYFVARNYEMGRAV 495
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ LI +GT D + +EM+ G P+ TYN L+ M K P IY
Sbjct: 402 DAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIY 461
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+M N + P+ +T+ ++++Y AR E +V+ EM +KG+ Y L+
Sbjct: 462 NKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISE 521
Query: 227 GYTDEAFEIFEDM 239
G + EA E+M
Sbjct: 522 GKSREACRYLEEM 534
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 86/177 (48%), Gaps = 5/177 (2%)
Query: 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 204
TYN+++ + + ++ + ++ +EM GL T+ ++A+ A+ + + ++ M
Sbjct: 197 TYNSMMSILAKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKKAVGIFELM 255
Query: 205 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRG 263
K+ ++ V N LL EA +F+ +K E P+ T++ ++ C R
Sbjct: 256 KKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLK--ERFTPNMMTYTVLLNGWCRVRN 313
Query: 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320
+ EA ++N+M++ G +P++ +++ ++ + D ++ + + G P+ R
Sbjct: 314 LI-EAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVR 369
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ LIKL + +Y +M ++P++ T+N ++ + A+ + ++
Sbjct: 437 DGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVW 496
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
EM G+ P+ N+Y L+R + EM +KGM+ + YN A
Sbjct: 497 DEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRG 556
Query: 227 GYTDEAFEIFEDM 239
G EIFE++
Sbjct: 557 GQP----EIFEEL 565
>sp|Q9LS88|PP250_ARATH Pentatricopeptide repeat-containing protein At3g23020
OS=Arabidopsis thaliana GN=At3g23020 PE=2 SV=1
Length = 842
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 38/245 (15%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ--------- 161
++ +IK YG + + + ++E M + GV P+ TYN L+ + A P +
Sbjct: 508 YNVMIKAYGISKSCEKACELFESMMSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMR 567
Query: 162 --------------------------VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE 195
+ +YKEM + + P+ Y L+ A+ +
Sbjct: 568 ETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLINAFADTGNVQ 627
Query: 196 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ--PDSWTFS 253
+S MKE G+ + +YN+L+ + VGY DEA I+ + S N PD +T +
Sbjct: 628 QAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSN 687
Query: 254 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313
MI + S R V +AEA+F+ M + G E N F ++ Y K R ++ + ++ E+
Sbjct: 688 CMINLYSERSMVRKAEAIFDSMKQRG-EANEFTFAMMLCMYKKNGRFEEATQIAKQMREM 746
Query: 314 GITPD 318
I D
Sbjct: 747 KILTD 751
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 101/216 (46%), Gaps = 9/216 (4%)
Query: 123 NFDGCLNVYEEMKAIGV-KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181
+++ + ++E K+ G + N+I YN +L +G+A + V++++ EM G+ P +TY
Sbjct: 166 HWERAVEIFEWFKSKGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTY 225
Query: 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241
+L+ Y + L +M + GMQ +L M +A E F+
Sbjct: 226 GTLIDVYSKGGLKVHALCWLGKMSKIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSC 285
Query: 242 SENCQPD------SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 295
EN + D S+T+++MI G++ EA F MLE G P ++I YG
Sbjct: 286 DEN-KADSHVCLSSYTYNTMIDTYGKSGQIKEASETFKRMLEEGIVPTTVTFNTMIHIYG 344
Query: 296 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 331
+ +V +L + +L PD R L+++ T+
Sbjct: 345 NNGQLGEVT-SLMKTMKLHCAPDTRTYNILISLHTK 379
Score = 66.6 bits (161), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 100/232 (43%), Gaps = 5/232 (2%)
Query: 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 150
K + Y + R + D + +I + G + VY+EM ++P+++ Y L+
Sbjct: 558 KGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEYNIEPDVVVYGVLI 617
Query: 151 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE---K 207
+ Q + + M + G+ N Y SL++ Y + Y ++ ++YR++ + K
Sbjct: 618 NAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNSLIKLYTKVGYLDEAEAIYRKLLQSCNK 677
Query: 208 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 267
V N ++ + ++ +A IF+ MK + + + +TF+ M+ + G+ E
Sbjct: 678 TQYPDVYTSNCMINLYSERSMVRKAEAIFDSMK--QRGEANEFTFAMMLCMYKKNGRFEE 735
Query: 268 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 319
A + +M E + S++ + R + V + GI PDD
Sbjct: 736 ATQIAKQMREMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDD 787
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 110/248 (44%), Gaps = 11/248 (4%)
Query: 86 RASKLKEKSYDTRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM 143
++ ++KE S +T R + I P F+T+I +YG G ++ + MK + P+
Sbjct: 310 KSGQIKEAS-ETFKRMLEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTMK-LHCAPDT 367
Query: 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 203
TYN L+ + + +KEM D+GL P+ +Y +LL A+ E+ + E
Sbjct: 368 RTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLIAE 427
Query: 204 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263
M + +++ + L M + ++++ F+ + N + +S+ I RG
Sbjct: 428 MDDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAGNMSSEG--YSANIDAYGERG 485
Query: 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 323
+SEAE +F E + + +I+ YG ++ + + G+TPD
Sbjct: 486 YLSEAERVFICCQEVN-KRTVIEYNVMIKAYGISKSCEKACELFESMMSYGVTPDK---- 540
Query: 324 CLLNVMTQ 331
C N + Q
Sbjct: 541 CTYNTLVQ 548
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 5/225 (2%)
Query: 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 169
+S I YG G V+ + + K +I YN ++ G +K + +++ M
Sbjct: 473 GYSANIDAYGERGYLSEAERVFICCQEVN-KRTVIEYNVMIKAYGISKSCEKACELFESM 531
Query: 170 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 229
G++P+ TY +L++ A +M+E G Y +++ +G
Sbjct: 532 MSYGVTPDKCTYNTLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQL 591
Query: 230 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS 289
+ A E++++M N +PD + +I + G V +A + M EAG N + S
Sbjct: 592 NMAEEVYKEM-VEYNIEPDVVVYGVLINAFADTGNVQQAMSYVEAMKEAGIPGNSVIYNS 650
Query: 290 LIQCYGKAQRTDD---VVRALNRLPELGITPDDRFCGCLLNVMTQ 331
LI+ Y K D+ + R L + PD C++N+ ++
Sbjct: 651 LIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCMINLYSE 695
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 9/188 (4%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVK---PNMITYNNLLDTMGRAKRPWQVKTIYK 167
+++LIKLY G D +Y ++ K P++ T N +++ + + I+
Sbjct: 648 YNSLIKLYTKVGYLDEAEAIYRKLLQSCNKTQYPDVYTSNCMINLYSERSMVRKAEAIFD 707
Query: 168 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227
M G N T+A +L Y + E+ + ++M+E + YN++L + A G
Sbjct: 708 SMKQRG-EANEFTFAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGLFALDG 766
Query: 228 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG----KVSEAEAMFNEMLEAGFEPN 283
EA E F++M SS QPD TF S+ TI G V + E + + ++ G E
Sbjct: 767 RFKEAVETFKEMVSS-GIQPDDSTFKSLGTILMKLGMSKKAVRKIEEIRKKEIKRGLELW 825
Query: 284 LFVLTSLI 291
+ L+SL+
Sbjct: 826 ISTLSSLV 833
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 14/217 (6%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
++ ++++ G A + ++++EM G+KP TY L+D + +M+
Sbjct: 190 YNIMLRILGKACKWRYVQSLWDEMIRKGIKPINSTYGTLIDVYSKGGLKVHALCWLGKMS 249
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE------MKEKGMQLSVTLYNTLLAMCA 224
G+ P+ T +L+ Y +AR + +++ + + LS YNT++
Sbjct: 250 KIGMQPDEVTTGIVLQMYKKAREFQKAEEFFKKWSCDENKADSHVCLSSYTYNTMIDTYG 309
Query: 225 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 284
G EA E F+ M E P + TF++MI I G++ E ++ M + P+
Sbjct: 310 KSGQIKEASETFKRM-LEEGIVPTTVTFNTMIHIYGNNGQLGEVTSLMKTM-KLHCAPDT 367
Query: 285 FVLTSLIQCYGKAQRTDDVVRALNRLPEL---GITPD 318
LI + K +D+ RA E+ G+ PD
Sbjct: 368 RTYNILISLHTK---NNDIERAGAYFKEMKDDGLKPD 401
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/259 (19%), Positives = 98/259 (37%), Gaps = 34/259 (13%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ LI L+ + + ++EMK G+KP+ ++Y LL + + +
Sbjct: 366 DTRTYNILISLHTKNNDIERAGAYFKEMKDDGLKPDPVSYRTLLYAFSIRHMVEEAEGLI 425
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK------------------EKG 208
EM D+ + + T ++L R Y A E + S ++ E+G
Sbjct: 426 AEMDDDNVEIDEYTQSALTRMYVEAEMLEKSWSWFKRFHVAGNMSSEGYSANIDAYGERG 485
Query: 209 M---------------QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 253
+ +V YN ++ ++A E+FE M S PD T++
Sbjct: 486 YLSEAERVFICCQEVNKRTVIEYNVMIKAYGISKSCEKACELFESMMSY-GVTPDKCTYN 544
Query: 254 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313
+++ I + + +M E G+ + ++I + K + + + E
Sbjct: 545 TLVQILASADMPHKGRCYLEKMRETGYVSDCIPYCAVISSFVKLGQLNMAEEVYKEMVEY 604
Query: 314 GITPDDRFCGCLLNVMTQT 332
I PD G L+N T
Sbjct: 605 NIEPDVVVYGVLINAFADT 623
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/117 (18%), Positives = 58/117 (49%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
F+ ++ +Y G F+ + ++M+ + + + ++YN++L R + +KEM
Sbjct: 720 FAMMLCMYKKNGRFEEATQIAKQMREMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMV 779
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227
+G+ P+ +T+ SL + + + E+++K ++ + L+ + L+ +G
Sbjct: 780 SSGIQPDDSTFKSLGTILMKLGMSKKAVRKIEEIRKKEIKRGLELWISTLSSLVGIG 836
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 98 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL---LDTMG 154
+ R K DP ++++++ L+ G F + ++EM + G++P+ T+ +L L +G
Sbjct: 742 QMREMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILMKLG 801
Query: 155 RAKRPW-QVKTIYKEMTDNGLSPNWNTYASLL 185
+K+ +++ I K+ GL +T +SL+
Sbjct: 802 MSKKAVRKIEEIRKKEIKRGLELWISTLSSLV 833
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 72/159 (45%), Gaps = 6/159 (3%)
Query: 108 PNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 165
P+ +++ +I LY +++ MK G + N T+ +L + R + I
Sbjct: 681 PDVYTSNCMINLYSERSMVRKAEAIFDSMKQRG-EANEFTFAMMLCMYKKNGRFEEATQI 739
Query: 166 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225
K+M + + + +Y S+L + ++ + ++EM G+Q + + +L +
Sbjct: 740 AKQMREMKILTDPLSYNSVLGLFALDGRFKEAVETFKEMVSSGIQPDDSTFKSLGTILMK 799
Query: 226 VGYTDEAFEIFEDMKSSENCQP-DSW--TFSSMITICSC 261
+G + +A E+++ E + + W T SS++ I C
Sbjct: 800 LGMSKKAVRKIEEIRKKEIKRGLELWISTLSSLVGIGDC 838
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 108/220 (49%), Gaps = 2/220 (0%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
F+ +K + A + ++E MK K + T N LLD++GRAK + + ++ ++
Sbjct: 232 FTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLK 291
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
+ +PN TY LL + R R + ++ +M ++G++ + +N +L
Sbjct: 292 ER-FTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKS 350
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 290
+A ++F MKS C P+ +++ MI + + A F++M+++G +P+ V T L
Sbjct: 351 DAIKLFHVMKSKGPC-PNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCL 409
Query: 291 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330
I +G ++ D V L + E G PD + L+ +M
Sbjct: 410 ITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMA 449
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 106/220 (48%), Gaps = 5/220 (2%)
Query: 103 KWRIDPNAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW 160
K R PN + + L G N ++ +M G+KP+++ +N +L+ + R+++
Sbjct: 291 KERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKS 350
Query: 161 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220
++ M G PN +Y ++R + + E + + +M + G+Q +Y L+
Sbjct: 351 DAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLI 410
Query: 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280
D +E+ ++M+ + PD T++++I + + + A ++N+M++
Sbjct: 411 TGFGTQKKLDTVYELLKEMQEKGH-PPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEI 469
Query: 281 EPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPDD 319
EP++ +++ Y A R ++ RA+ + + GI PDD
Sbjct: 470 EPSIHTFNMIMKSYFMA-RNYEMGRAVWEEMIKKGICPDD 508
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 1/201 (0%)
Query: 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 200
PNM+TY LL+ R + + I+ +M D GL P+ + +L R+R D + +
Sbjct: 296 PNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKL 355
Query: 201 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 260
+ MK KG +V Y ++ + A E F+DM S QPD+ ++ +IT
Sbjct: 356 FHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDS-GLQPDAAVYTCLITGFG 414
Query: 261 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320
+ K+ + EM E G P+ +LI+ + + R N++ + I P
Sbjct: 415 TQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIH 474
Query: 321 FCGCLLNVMTQTPKEELGKLV 341
++ E+G+ V
Sbjct: 475 TFNMIMKSYFMARNYEMGRAV 495
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 63/133 (47%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ LI +GT D + +EM+ G P+ TYN L+ M K P IY
Sbjct: 402 DAAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIY 461
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+M N + P+ +T+ ++++Y AR E +V+ EM +KG+ Y L+
Sbjct: 462 NKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGE 521
Query: 227 GYTDEAFEIFEDM 239
G + EA E+M
Sbjct: 522 GKSREACRYLEEM 534
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ LIKL + +Y +M ++P++ T+N ++ + A+ + ++
Sbjct: 437 DGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVW 496
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+EM G+ P+ N+Y L+R + EM +KGM+ + YN A
Sbjct: 497 EEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLIDYNKFAADFHRG 556
Query: 227 GYTDEAFEIFEDM 239
G EIFE++
Sbjct: 557 GQP----EIFEEL 565
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 17/154 (11%)
Query: 172 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE 231
G + + TY S++ + R E +SV EM KG+ L++ + + A +
Sbjct: 189 QGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGL-LTMETFTIAMKAFAAAKERKK 247
Query: 232 AFEIFEDMKSSENCQPDSWTFSSMITICSC------RGKVS-EAEAMFNEMLEAGFEPNL 284
A IFE MK + F + +C R K+ EA+ +F+++ E F PN+
Sbjct: 248 AVGIFELMK--------KYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKER-FTPNM 298
Query: 285 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
T L+ + + + + R N + + G+ PD
Sbjct: 299 MTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPD 332
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 113/229 (49%), Gaps = 6/229 (2%)
Query: 92 EKSYDTRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 149
EK YD K IDP+ F S+LI + D +++E M + PN++TYN L
Sbjct: 346 EKLYDEMI---KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 402
Query: 150 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 209
+ +AKR + +++EM+ GL N TY +L+ + +AR ++ V+++M G+
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGV 462
Query: 210 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269
+ Y+ LL + G + A +FE ++ S+ +PD +T++ MI GKV +
Sbjct: 463 LPDIMTYSILLDGLCNNGKVETALVVFEYLQRSK-MEPDIYTYNIMIEGMCKAGKVEDGW 521
Query: 270 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+F + G +PN+ T+++ + + ++ + E G PD
Sbjct: 522 DLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPD 570
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 120/243 (49%), Gaps = 5/243 (2%)
Query: 102 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
E+ +I+P ++T+I N + LN++ EM G++PN++TYN+L+ + R
Sbjct: 248 EQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRW 307
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219
+ +M + ++PN T+++L+ A+ + + +Y EM ++ + + Y++L
Sbjct: 308 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 367
Query: 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEA 278
+ DEA +FE M S++C P+ T++++I C + +V E +F EM +
Sbjct: 368 INGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKAK-RVDEGMELFREMSQR 425
Query: 279 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 338
G N T+LI + +A+ D+ ++ G+ PD LL+ + K E
Sbjct: 426 GLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETA 485
Query: 339 KLV 341
+V
Sbjct: 486 LVV 488
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 104/216 (48%), Gaps = 3/216 (1%)
Query: 105 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 162
+I+PN FS LI + G +Y+EM + P++ TY++L++ R +
Sbjct: 321 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 380
Query: 163 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222
K +++ M PN TY +L++ + +A+ ++ + ++REM ++G+ + Y TL+
Sbjct: 381 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHG 440
Query: 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 282
D A +F+ M S+ PD T+S ++ GKV A +F + + EP
Sbjct: 441 FFQARECDNAQIVFKQM-VSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEP 499
Query: 283 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+++ +I+ KA + +D L G+ P+
Sbjct: 500 DIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 535
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 100/198 (50%), Gaps = 7/198 (3%)
Query: 122 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181
G+ D L++ ++M+ ++P ++ YN ++D + K ++ EM + G+ PN TY
Sbjct: 235 GDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 294
Query: 182 ASLLRA---YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 238
SL+R YGR D + +M E+ + +V ++ L+ G EA +++++
Sbjct: 295 NSLIRCLCNYGRW---SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 351
Query: 239 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 298
M + PD +T+SS+I ++ EA+ MF M+ PN+ +LI+ + KA+
Sbjct: 352 M-IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 410
Query: 299 RTDDVVRALNRLPELGIT 316
R D+ + + + G+
Sbjct: 411 RVDEGMELFREMSQRGLV 428
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 115/284 (40%), Gaps = 19/284 (6%)
Query: 53 SSNPTKHSQNPQYPHGKTGSSPKSY----IWVNPKSP-----------RASKLK-EKSYD 96
SS + GK G++P S+ WV S R + LK + + +
Sbjct: 8 SSTGNRFVHRSLLGKGKCGTAPPSFSHCSFWVRDFSGVRYDYRKISINRLNDLKLDDAVN 67
Query: 97 TRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154
K R P+ FS L+ FD +++ E+M+ +G+ N+ TY+ L++
Sbjct: 68 LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFC 127
Query: 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 214
R + + +M G P+ T SLL + D +S+ +M E G Q
Sbjct: 128 RRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSF 187
Query: 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274
+NTL+ EA + + M + CQPD T+ ++ RG + A ++ +
Sbjct: 188 TFNTLIHGLFRHNRASEAVALVDRM-VVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKK 246
Query: 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
M + EP + + ++I + +D + + GI P+
Sbjct: 247 MEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 68/135 (50%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D +S L+ G + L V+E ++ ++P++ TYN +++ M +A + ++
Sbjct: 465 DIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 524
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
++ G+ PN TY +++ + R E+ +++REMKE+G YNTL+
Sbjct: 525 CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRD 584
Query: 227 GYTDEAFEIFEDMKS 241
G + E+ +M+S
Sbjct: 585 GDKAASAELIREMRS 599
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Query: 102 EKWRIDPNAFSTLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
++ +++P+ ++ I + G AG + +++ + GVKPN++TY ++ R
Sbjct: 493 QRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLK 552
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMK 205
+ +++EM + G P+ TY +L+RA+ R + + REM+
Sbjct: 553 EEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMR 598
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 106/226 (46%), Gaps = 3/226 (1%)
Query: 92 EKSYDTRARNEKWRIDPNAFST--LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 149
E++ ++ +++R+ P S L+ + G D +++M G +P + TYN +
Sbjct: 209 EEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIM 268
Query: 150 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 209
+D M + + +++EM GL P+ TY S++ +G+ +DT+ + EMK+
Sbjct: 269 IDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 328
Query: 210 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269
+ V YN L+ G E + +MK + +P+ ++S+++ G + +A
Sbjct: 329 EPDVITYNALINCFCKFGKLPIGLEFYREMKGN-GLKPNVVSYSTLVDAFCKEGMMQQAI 387
Query: 270 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 315
+ +M G PN + TSLI K D R N + ++G+
Sbjct: 388 KFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGV 433
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 100/248 (40%), Gaps = 41/248 (16%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D ++ LI + G L Y EMK G+KPN+++Y+ L+D + Q Y
Sbjct: 331 DVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFY 390
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+M GL PN TY SL+ A + D + EM + G++ +V Y L+ D
Sbjct: 391 VDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDA 450
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286
E MK EAE +F +M AG PNL
Sbjct: 451 ----------ERMK--------------------------EAEELFGKMDTAGVIPNLAS 474
Query: 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLV----- 341
+LI + KA+ D + LN L GI PD G + + K E K+V
Sbjct: 475 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMK 534
Query: 342 ECVEKSNS 349
EC K+NS
Sbjct: 535 ECGIKANS 542
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 95/210 (45%), Gaps = 7/210 (3%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
FS LI L G + + + +MK V P + N LL + + VK +K+M
Sbjct: 199 FSVLIDL----GMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMI 254
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
G P TY ++ + E ++ EMK +G+ YN+++ VG D
Sbjct: 255 GAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLD 314
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTS 289
+ FE+MK C+PD T++++I C C+ GK+ + EM G +PN+ ++
Sbjct: 315 DTVCFFEEMKDM-CCEPDVITYNALIN-CFCKFGKLPIGLEFYREMKGNGLKPNVVSYST 372
Query: 290 LIQCYGKAQRTDDVVRALNRLPELGITPDD 319
L+ + K ++ + +G+ P++
Sbjct: 373 LVDAFCKEGMMQQAIKFYVDMRRVGLVPNE 402
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 109/234 (46%), Gaps = 3/234 (1%)
Query: 87 ASKLKEKSYDTRARNEKWRIDPN--AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 144
A ++KE + + + + PN +++ LI + A N D L + E+K G+KP+++
Sbjct: 450 AERMKEAE-ELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLL 508
Query: 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 204
Y + + ++ K + EM + G+ N Y +L+ AY ++ + L + EM
Sbjct: 509 LYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEM 568
Query: 205 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264
KE ++++V + L+ +A + F + + Q ++ F++MI +
Sbjct: 569 KELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQ 628
Query: 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
V A +F +M++ G P+ TSL+ K + + +++ E+G+ D
Sbjct: 629 VEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLD 682
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 79/220 (35%), Gaps = 51/220 (23%)
Query: 169 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV--------------- 213
MT NG + +Y + AR D SV +EM V
Sbjct: 133 MTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKADCDVFDVLWSTRNVCVPGF 192
Query: 214 TLYNTLLAMCADVGYTDEAFEIFEDMK------SSENC---------------------- 245
+++ L ++ D+G +EA + F MK + +C
Sbjct: 193 GVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKD 252
Query: 246 ------QPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 298
+P +T++ MI C C+ G V A +F EM G P+ S+I +GK
Sbjct: 253 MIGAGARPTVFTYNIMID-CMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVG 311
Query: 299 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG 338
R DD V + ++ PD L+N + K +G
Sbjct: 312 RLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIG 351
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 137 IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 196
G++ N + ++D + + + T++++M GL P+ Y SL+ + +
Sbjct: 607 FGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLE 666
Query: 197 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 248
L++ +M E GM+L + Y +L+ + +A E+M E PD
Sbjct: 667 ALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM-IGEGIHPD 717
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 3/151 (1%)
Query: 88 SKLKEKSYDTRAR-NEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI 144
+KL K+ D R + + + NA F+ +I + ++E+M G+ P+
Sbjct: 590 NKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRT 649
Query: 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 204
Y +L+D + + + +M + G+ + Y SL+ + S EM
Sbjct: 650 AYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEM 709
Query: 205 KEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 235
+G+ L ++L ++G DEA E+
Sbjct: 710 IGEGIHPDEVLCISVLKKHYELGCIDEAVEL 740
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 117/264 (44%), Gaps = 39/264 (14%)
Query: 92 EKSYDTRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 149
E + D E ++ PN ++ LIK Y N + V +M V P+++TYN+L
Sbjct: 410 EDAVDVVELMESRKLSPNTRTYNELIKGY-CKSNVHKAMGVLNKMLERKVLPDVVTYNSL 468
Query: 150 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 209
+D R+ + M D GL P+ TY S++ + +++ E+ ++ +++KG+
Sbjct: 469 IDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGV 528
Query: 210 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269
+V +Y L+ G DEA + E M S+NC P+S TF+++I GK+ EA
Sbjct: 529 NPNVVMYTALIDGYCKAGKVDEAHLMLEKM-LSKNCLPNSLTFNALIHGLCADGKLKEAT 587
Query: 270 AM-----------------------------------FNEMLEAGFEPNLFVLTSLIQCY 294
+ F +ML +G +P+ T+ IQ Y
Sbjct: 588 LLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTY 647
Query: 295 GKAQRTDDVVRALNRLPELGITPD 318
+ R D + ++ E G++PD
Sbjct: 648 CREGRLLDAEDMMAKMRENGVSPD 671
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 3/217 (1%)
Query: 103 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 162
K+++ ++TL+ G D VY EM V PN+ TYN +++ + +
Sbjct: 178 KYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEA 237
Query: 163 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222
++ + GL P++ TY SL+ Y + + + V+ EM KG + + Y L+
Sbjct: 238 NQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHG 297
Query: 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-TICSCRGKVSEAEAMFNEMLEAGFE 281
DEA ++F MK E C P T++ +I ++C K SEA + EM E G +
Sbjct: 298 LCVARRIDEAMDLFVKMKDDE-CFPTVRTYTVLIKSLCGSERK-SEALNLVKEMEETGIK 355
Query: 282 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
PN+ T LI + + L ++ E G+ P+
Sbjct: 356 PNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPN 392
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 105/214 (49%), Gaps = 2/214 (0%)
Query: 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 164
R + A++ LI A D ++++ +MK P + TY L+ ++ ++R +
Sbjct: 285 RRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALN 344
Query: 165 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224
+ KEM + G+ PN +TY L+ + E + +M EKG+ +V YN L+
Sbjct: 345 LVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYC 404
Query: 225 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 284
G ++A ++ E M+S + P++ T++ +I C+ V +A + N+MLE P++
Sbjct: 405 KRGMIEDAVDVVELMESRK-LSPNTRTYNELIK-GYCKSNVHKAMGVLNKMLERKVLPDV 462
Query: 285 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
SLI ++ D R L+ + + G+ PD
Sbjct: 463 VTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPD 496
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 107/235 (45%), Gaps = 37/235 (15%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
++ LIK + LN+ +EM+ G+KPN+ TY L+D++ + + + + +M
Sbjct: 326 YTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQML 385
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSV---------------YRE------------ 203
+ GL PN TY +L+ Y + ED + V Y E
Sbjct: 386 EKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHK 445
Query: 204 -------MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 256
M E+ + V YN+L+ G D A+ + M + PD WT++SMI
Sbjct: 446 AMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLM-NDRGLVPDQWTYTSMI 504
Query: 257 -TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310
++C + +V EA +F+ + + G PN+ + T+LI Y KA + D+ L ++
Sbjct: 505 DSLCKSK-RVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 130/292 (44%), Gaps = 35/292 (11%)
Query: 122 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181
G+FD + +++M + G KP+ TY + T R R + + +M +NG+SP+ TY
Sbjct: 616 GDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY 675
Query: 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTLLAM------------CA- 224
+SL++ YG V + M++ G + S ++L LL M CA
Sbjct: 676 SSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAM 735
Query: 225 -DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLE-AGFE 281
++ D E+ E M + P++ ++ +I IC G + AE +F+ M G
Sbjct: 736 SNMMEFDTVVELLEKM-VEHSVTPNAKSYEKLILGICEV-GNLRVAEKVFDHMQRNEGIS 793
Query: 282 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELG--- 338
P+ V +L+ C K ++ ++ + ++ + +G P C L+ + + ++E G
Sbjct: 794 PSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSV 853
Query: 339 --KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYC 388
L++C GY L + I+G K+ E F + ++K C
Sbjct: 854 FQNLLQC--------GYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGC 897
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 89/196 (45%), Gaps = 18/196 (9%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D + ++T I+ Y G ++ +M+ GV P++ TY++L+ G + +
Sbjct: 636 DAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVL 695
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDT--------------LSVYREMKEKGMQLS 212
K M D G P+ +T+ SL++ +YG+ E+ EK ++ S
Sbjct: 696 KRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHS 755
Query: 213 VT----LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268
VT Y L+ +VG A ++F+ M+ +E P F+++++ C K +EA
Sbjct: 756 VTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEA 815
Query: 269 EAMFNEMLEAGFEPNL 284
+ ++M+ G P L
Sbjct: 816 AKVVDDMICVGHLPQL 831
>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810,
chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1
Length = 952
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 110/271 (40%), Gaps = 36/271 (13%)
Query: 92 EKSYDTRARNEKWRIDP--NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 149
+++ T +K R P F +I Y +G+ L V++ M+ G P + T+N L
Sbjct: 571 DRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGL 630
Query: 150 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 209
++ + ++ + I EMT G+S N +TY +++ Y + ++ +G+
Sbjct: 631 INGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQGYASVGDTGKAFEYFTRLQNEGL 690
Query: 210 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS---------------------------- 241
+ + Y LL C G A + ++M +
Sbjct: 691 DVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAAD 750
Query: 242 ------SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 295
E +PD T++S I+ CS G ++ A EM G +PN+ T+LI+ +
Sbjct: 751 LIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGWA 810
Query: 296 KAQRTDDVVRALNRLPELGITPDDRFCGCLL 326
+A + + + +GI PD CLL
Sbjct: 811 RASLPEKALSCYEEMKAMGIKPDKAVYHCLL 841
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 123/266 (46%), Gaps = 15/266 (5%)
Query: 86 RASKLKEKSYDTRARNEK-WRID-PNAFSTLIKLYGTAG-NFDGCLNVYEEMKAIGVKPN 142
R ++E DT+ N+ W + + +L ++ T G N+ ++ +E++ KP+
Sbjct: 253 RVRWVEEGEEDTKMSNKSSWHQEREGSRKSLQRILDTNGDNWQAVISAFEKIS----KPS 308
Query: 143 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 202
+ ++ GR + + ++ M G++P Y SL+ AY R ++ LS R
Sbjct: 309 RTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVR 368
Query: 203 EMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC-SC 261
+MKE+G+++S+ Y+ ++ + G+ + A F++ K S + C +C
Sbjct: 369 KMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTC 428
Query: 262 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 321
+ AEA+ EM E G + + + +++ Y + RL E G TP
Sbjct: 429 --NMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVT 486
Query: 322 CGCLLNVMTQTPKEELGKLVECVEKS 347
GCL+N+ T+ +GK+ + +E S
Sbjct: 487 YGCLINLYTK-----VGKISKALEVS 507
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 7/210 (3%)
Query: 95 YDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154
Y TR +NE +D + L+K +G L V +EM A + N YN L+D
Sbjct: 681 YFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFVYNILIDGWA 740
Query: 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT 214
R W+ + ++M G+ P+ +TY S + A +A EM+ G++ ++
Sbjct: 741 RRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIK 800
Query: 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA------ 268
Y TL+ A ++A +E+MK+ +PD + ++T R ++EA
Sbjct: 801 TYTTLIKGWARASLPEKALSCYEEMKAM-GIKPDKAVYHCLLTSLLSRASIAEAYIYSGV 859
Query: 269 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 298
+ EM+EAG ++ +C K +
Sbjct: 860 MTICKEMVEAGLIVDMGTAVHWSKCLCKIE 889
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 101/212 (47%), Gaps = 7/212 (3%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN---NLLDTMGRAKRPWQVKTIYK 167
+ T++ Y + L V++ +K G P ++TY NL +G+ + +V + K
Sbjct: 452 YHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMK 511
Query: 168 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227
E G+ N TY+ ++ + + + + +V+ +M ++GM+ V LYN +++ +G
Sbjct: 512 E---EGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFCGMG 568
Query: 228 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVL 287
D A + ++M+ + +P + TF +I + G + + +F+ M G P +
Sbjct: 569 NMDRAIQTVKEMQKLRH-RPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHTF 627
Query: 288 TSLIQCYGKAQRTDDVVRALNRLPELGITPDD 319
LI + ++ + V L+ + G++ ++
Sbjct: 628 NGLINGLVEKRQMEKAVEILDEMTLAGVSANE 659
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/217 (21%), Positives = 93/217 (42%), Gaps = 1/217 (0%)
Query: 102 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 161
E + D ++ +I + GN D + +EM+ + +P T+ ++ ++ +
Sbjct: 548 EGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRR 607
Query: 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221
++ M G P +T+ L+ R E + + EM G+ + Y ++
Sbjct: 608 SLEVFDMMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAGVSANEHTYTKIMQ 667
Query: 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 281
A VG T +AFE F ++ +E D +T+ +++ C G++ A A+ EM
Sbjct: 668 GYASVGDTGKAFEYFTRLQ-NEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIP 726
Query: 282 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
N FV LI + + + + ++ + G+ PD
Sbjct: 727 RNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPD 763
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 10/225 (4%)
Query: 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 165
++ + + +I + N + + EM+ G+ + Y+ ++D + +
Sbjct: 412 LNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVV 471
Query: 166 YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225
+K + + G +P TY L+ Y + L V R MKE+G++ ++ Y+ ++
Sbjct: 472 FKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVK 531
Query: 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 285
+ AF +FEDM E +PD ++++I+ G + A EM + P
Sbjct: 532 LKDWANAFAVFEDM-VKEGMKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTR 590
Query: 286 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330
+I Y K + D+ R+L + R CGC+ V T
Sbjct: 591 TFMPIIHGYAK---SGDMRRSLEVFDMM------RRCGCVPTVHT 626
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 109/265 (41%), Gaps = 38/265 (14%)
Query: 93 KSYDTRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 150
++ +T R I P + +++LI Y + D L+ +MK G++ +++TY+ ++
Sbjct: 327 RARETFERMRARGITPTSRIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIV 386
Query: 151 DTMGRAKRP-----W--QVKTIYK----------------------------EMTDNGLS 175
+A W + K I+K EM + G+
Sbjct: 387 GGFSKAGHAEAADYWFDEAKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGID 446
Query: 176 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 235
Y +++ Y + L V++ +KE G +V Y L+ + VG +A E+
Sbjct: 447 APIAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEV 506
Query: 236 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 295
MK E + + T+S MI + A A+F +M++ G +P++ + ++I +
Sbjct: 507 SRVMK-EEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNIISAFC 565
Query: 296 KAQRTDDVVRALNRLPELGITPDDR 320
D ++ + + +L P R
Sbjct: 566 GMGNMDRAIQTVKEMQKLRHRPTTR 590
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 6/229 (2%)
Query: 92 EKSYDTRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 149
EK YD K IDP+ F S+LI + D +++E M + PN++TY+ L
Sbjct: 348 EKLYDEMI---KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404
Query: 150 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 209
+ +AKR + +++EM+ GL N TY +L+ + +AR ++ V+++M G+
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGV 464
Query: 210 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269
++ YN LL G +A +FE ++ S +PD +T++ MI GKV +
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRS-TMEPDIYTYNIMIEGMCKAGKVEDGW 523
Query: 270 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+F + G PN+ ++I + + ++ L ++ E G P+
Sbjct: 524 ELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPN 572
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 107/216 (49%), Gaps = 3/216 (1%)
Query: 105 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 162
+I+PN FS LI + G +Y+EM + P++ TY++L++ R +
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 382
Query: 163 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222
K +++ M PN TY++L++ + +A+ E+ + ++REM ++G+ + Y TL+
Sbjct: 383 KHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHG 442
Query: 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 282
D A +F+ M S P+ T++ ++ GK+++A +F + + EP
Sbjct: 443 FFQARDCDNAQMVFKQMVSV-GVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEP 501
Query: 283 NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+++ +I+ KA + +D L G++P+
Sbjct: 502 DIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPN 537
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 112/220 (50%), Gaps = 5/220 (2%)
Query: 102 EKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
EK +I+ + ++T+I + D LN++ EM G++P++ TY++L+ + R
Sbjct: 250 EKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRW 309
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219
+ +M + ++PN T+++L+ A+ + + +Y EM ++ + + Y++L
Sbjct: 310 SDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSL 369
Query: 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEA 278
+ DEA +FE M S++C P+ T+S++I C + +V E +F EM +
Sbjct: 370 INGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYSTLIKGFCKAK-RVEEGMELFREMSQR 427
Query: 279 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
G N T+LI + +A+ D+ ++ +G+ P+
Sbjct: 428 GLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPN 467
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 106/213 (49%), Gaps = 3/213 (1%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D S+L+ Y + + + ++M +G KP+ T+ L+ + + + +
Sbjct: 152 DIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALV 211
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226
+M G P+ TY +++ + + LS+ ++M++ ++ V +YNT++
Sbjct: 212 DQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKY 271
Query: 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLF 285
+ D+A +F +M ++ +PD +T+SS+I+ C C G+ S+A + ++M+E PN+
Sbjct: 272 KHMDDALNLFTEM-DNKGIRPDVFTYSSLIS-CLCNYGRWSDASRLLSDMIERKINPNVV 329
Query: 286 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
++LI + K + + + + + + I PD
Sbjct: 330 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 107/213 (50%), Gaps = 7/213 (3%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D + T++ G+ D L++ ++M+ ++ +++ YN ++D + + K ++
Sbjct: 222 DLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLF 281
Query: 167 KEMTDNGLSPNWNTYASLLRA---YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
EM + G+ P+ TY+SL+ YGR D + +M E+ + +V ++ L+
Sbjct: 282 TEMDNKGIRPDVFTYSSLISCLCNYGRW---SDASRLLSDMIERKINPNVVTFSALIDAF 338
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283
G EA +++++M + PD +T+SS+I ++ EA+ MF M+ PN
Sbjct: 339 VKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 397
Query: 284 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 316
+ ++LI+ + KA+R ++ + + + G+
Sbjct: 398 VVTYSTLIKGFCKAKRVEEGMELFREMSQRGLV 430
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 92/208 (44%), Gaps = 1/208 (0%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
F+ L+ F+ +++ E+M+ +G+ ++ TY+ ++ R + + +M
Sbjct: 86 FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMM 145
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
G P+ T +SLL Y ++ D +++ +M E G + + TL+
Sbjct: 146 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKAS 205
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 290
EA + + M CQPD T+ +++ RG + A ++ +M + E ++ + ++
Sbjct: 206 EAVALVDQM-VQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTI 264
Query: 291 IQCYGKAQRTDDVVRALNRLPELGITPD 318
I K + DD + + GI PD
Sbjct: 265 IDGLCKYKHMDDALNLFTEMDNKGIRPD 292
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 90/192 (46%), Gaps = 17/192 (8%)
Query: 128 LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187
L V+ ++ IG P + ++ NL + + Y+E+ N LS
Sbjct: 12 LFVHWNLQGIGNPPTVPSFFNLCGSGCWERSFASASGDYREILRNRLSDIIKV------- 64
Query: 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 247
+D + ++ +M + S+ +N LL+ A + + + E M++
Sbjct: 65 -------DDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTL-GISH 116
Query: 248 DSWTFSSMITICSCR-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 306
D +T+S I C CR ++S A A+ +M++ G+EP++ L+SL+ Y ++R D V
Sbjct: 117 DLYTYSIFIN-CFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVAL 175
Query: 307 LNRLPELGITPD 318
++++ E+G PD
Sbjct: 176 VDQMVEMGYKPD 187
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 106 IDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK 163
+ PN + I L G G + V+E ++ ++P++ TYN +++ M +A +
Sbjct: 464 VHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGW 523
Query: 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
++ ++ G+SPN Y +++ + R E+ S+ ++MKE G + YNTL+
Sbjct: 524 ELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRAR 583
Query: 224 ADVGYTDEAFEIFEDMKS 241
G + + E+ ++M+S
Sbjct: 584 LRDGDREASAELIKEMRS 601
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Query: 102 EKWRIDPNAFSTLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
++ ++P+ ++ I + G AG + ++ + GV PN+I YN ++ R
Sbjct: 495 QRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSK 554
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219
+ ++ K+M ++G PN TY +L+RA R E + + +EM+ G + +
Sbjct: 555 EEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLV 614
Query: 220 LAMCADVGYTDEAF 233
M D G D++F
Sbjct: 615 TNMLHD-GRLDKSF 627
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 104/200 (52%), Gaps = 3/200 (1%)
Query: 105 RIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQV 162
+I+PN FS LI + G +Y+EM + P++ TY++L++ R +
Sbjct: 320 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA 379
Query: 163 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222
K +++ M PN TY +L++ + +A+ E+ + ++REM ++G+ + YNTL+
Sbjct: 380 KHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQG 439
Query: 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 282
G D A +IF+ M S+ PD T+S ++ GK+ +A +F + ++ EP
Sbjct: 440 LFQAGDCDMAQKIFKKM-VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEP 498
Query: 283 NLFVLTSLIQCYGKAQRTDD 302
+++ +I+ KA + +D
Sbjct: 499 DIYTYNIMIEGMCKAGKVED 518
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 112/229 (48%), Gaps = 6/229 (2%)
Query: 92 EKSYDTRARNEKWRIDPNAF--STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL 149
EK YD K IDP+ F S+LI + D +++E M + PN++TYN L
Sbjct: 345 EKLYDEMI---KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401
Query: 150 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 209
+ +AKR + +++EM+ GL N TY +L++ +A + ++++M G+
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461
Query: 210 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269
+ Y+ LL G ++A +FE ++ S+ +PD +T++ MI GKV +
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK-MEPDIYTYNIMIEGMCKAGKVEDGW 520
Query: 270 AMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318
+F + G +PN+ + T++I + + ++ + E G P+
Sbjct: 521 DLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPN 569
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/252 (25%), Positives = 125/252 (49%), Gaps = 6/252 (2%)
Query: 100 RNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 157
+ EK +I+ + ++T+I N + LN++ EM G++PN++TYN+L+ +
Sbjct: 245 KMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYG 304
Query: 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217
R + +M + ++PN T+++L+ A+ + + +Y EM ++ + + Y+
Sbjct: 305 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 364
Query: 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEML 276
+L+ DEA +FE M S++C P+ T++++I C + +V E +F EM
Sbjct: 365 SLINGFCMHDRLDEAKHMFELM-ISKDCFPNVVTYNTLIKGFCKAK-RVEEGMELFREMS 422
Query: 277 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEE 336
+ G N +LIQ +A D + ++ G+ PD LL+ + + K E
Sbjct: 423 QRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLE 482
Query: 337 LGKLV-ECVEKS 347
+V E ++KS
Sbjct: 483 KALVVFEYLQKS 494
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 99/189 (52%), Gaps = 7/189 (3%)
Query: 108 PNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTI 165
PN ++TLIK + A + + ++ EM G+ N +TYN L+ + +A + I
Sbjct: 393 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452
Query: 166 YKEMTDNGLSPNWNTYASLLRAYGRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
+K+M +G+ P+ TY+ LL G +YG E L V+ +++ M+ + YN ++
Sbjct: 453 FKKMVSDGVPPDIITYSILLD--GLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGM 510
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283
G ++ +++F + S + +P+ +++MI+ +G EA+A+F EM E G PN
Sbjct: 511 CKAGKVEDGWDLFCSL-SLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPN 569
Query: 284 LFVLTSLIQ 292
+LI+
Sbjct: 570 SGTYNTLIR 578
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 104/213 (48%), Gaps = 7/213 (3%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D + T++ G+ D L++ ++M+ ++ +++ Y ++D + K ++
Sbjct: 219 DLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLF 278
Query: 167 KEMTDNGLSPNWNTYASLLRA---YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223
EM + G+ PN TY SL+R YGR LS +M E+ + +V ++ L+
Sbjct: 279 TEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLS---DMIERKINPNVVTFSALIDAF 335
Query: 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283
G EA +++++M + PD +T+SS+I ++ EA+ MF M+ PN
Sbjct: 336 VKEGKLVEAEKLYDEM-IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 394
Query: 284 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 316
+ +LI+ + KA+R ++ + + + G+
Sbjct: 395 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLV 427
Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 108/261 (41%), Gaps = 49/261 (18%)
Query: 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIY 166
D S+L+ Y + + ++M + +PN +T+N L+ + + + +
Sbjct: 149 DIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALI 208
Query: 167 KEMTDNGLSPNWNTYASLLRAYGRARYGE------------------------------- 195
M G P+ TY +++ G + G+
Sbjct: 209 DRMVARGCQPDLFTYGTVVN--GLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALC 266
Query: 196 ------DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 249
D L+++ EM KG++ +V YN+L+ + G +A + DM P+
Sbjct: 267 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM-IERKINPNV 325
Query: 250 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 309
TFS++I GK+ EAE +++EM++ +P++F +SLI + R D+
Sbjct: 326 VTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEA----KH 381
Query: 310 LPELGITPDDRFCGCLLNVMT 330
+ EL I+ D C NV+T
Sbjct: 382 MFELMISKD-----CFPNVVT 397
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 90/170 (52%), Gaps = 1/170 (0%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
++TLI+ AG+ D ++++M + GV P++ITY+ LLD + + + + +++ +
Sbjct: 433 YNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQ 492
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
+ + P+ TY ++ +A ED ++ + KG++ +V +Y T+++ G +
Sbjct: 493 KSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKE 552
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280
EA +F +MK + P+S T++++I G + + + EM GF
Sbjct: 553 EADALFREMK-EDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGF 601
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 92/208 (44%), Gaps = 1/208 (0%)
Query: 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170
F+ L+ FD +++ E M+ + + ++ +YN L++ R + + +M
Sbjct: 83 FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142
Query: 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230
G P+ T +SLL Y + + +++ +M Q + +NTL+
Sbjct: 143 KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKAS 202
Query: 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 290
EA + + M + CQPD +T+ +++ RG + A ++ +M + E ++ + T++
Sbjct: 203 EAVALIDRM-VARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTI 261
Query: 291 IQCYGKAQRTDDVVRALNRLPELGITPD 318
I + +D + + GI P+
Sbjct: 262 IDALCNYKNVNDALNLFTEMDNKGIRPN 289
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 102 EKWRIDPNAFSTLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159
+K +++P+ ++ I + G AG + +++ + GVKPN+I Y ++ R
Sbjct: 492 QKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLK 551
Query: 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS--VYREMKEKGMQLSVTLYN 217
+ +++EM ++G PN TY +L+RA R R G+ S + +EM+ G + +
Sbjct: 552 EEADALFREMKEDGTLPNSGTYNTLIRA--RLRDGDKAASAELIKEMRSCGFVGDASTIS 609
Query: 218 TLLAMCAD 225
++ M D
Sbjct: 610 MVINMLHD 617
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,650,445
Number of Sequences: 539616
Number of extensions: 8161924
Number of successful extensions: 28653
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 22187
Number of HSP's gapped (non-prelim): 2968
length of query: 533
length of database: 191,569,459
effective HSP length: 122
effective length of query: 411
effective length of database: 125,736,307
effective search space: 51677622177
effective search space used: 51677622177
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)