Query 009506
Match_columns 533
No_of_seqs 633 out of 3080
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 13:56:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.5E-60 5.4E-65 514.1 52.6 427 91-521 455-1023(1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.2E-51 4.7E-56 444.6 41.5 335 106-447 435-777 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 4E-50 8.7E-55 431.5 34.5 342 90-447 104-449 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 3.1E-50 6.7E-55 442.4 29.0 393 91-508 205-696 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.6E-48 5.7E-53 417.4 34.0 367 91-477 141-578 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 4.7E-47 1E-51 417.2 30.4 370 91-477 170-605 (857)
7 PRK11788 tetratricopeptide rep 99.9 3.2E-19 6.9E-24 179.8 34.7 301 115-421 42-354 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.8 1.1E-17 2.4E-22 187.0 40.0 312 91-413 517-831 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 5.3E-17 1.2E-21 181.4 41.1 316 90-415 482-800 (899)
10 PRK11788 tetratricopeptide rep 99.8 1.6E-16 3.4E-21 160.2 33.6 283 91-380 53-345 (389)
11 KOG4422 Uncharacterized conser 99.8 6E-15 1.3E-19 138.0 32.9 308 104-415 203-552 (625)
12 PRK15174 Vi polysaccharide exp 99.7 6E-14 1.3E-18 149.2 39.1 314 91-414 60-381 (656)
13 PRK15174 Vi polysaccharide exp 99.7 6.8E-14 1.5E-18 148.8 36.3 296 112-415 46-348 (656)
14 TIGR00990 3a0801s09 mitochondr 99.7 1.5E-12 3.3E-17 138.6 39.0 299 110-415 129-497 (615)
15 TIGR00990 3a0801s09 mitochondr 99.6 2E-12 4.4E-17 137.7 39.1 339 103-454 155-572 (615)
16 PRK11447 cellulose synthase su 99.6 2.7E-12 5.9E-17 145.8 39.9 317 92-415 288-701 (1157)
17 KOG4626 O-linked N-acetylgluco 99.6 3.2E-13 6.9E-18 132.0 24.9 294 107-413 115-416 (966)
18 PRK11447 cellulose synthase su 99.6 2.7E-11 5.9E-16 137.7 39.1 317 92-420 370-747 (1157)
19 KOG4626 O-linked N-acetylgluco 99.5 2.9E-12 6.3E-17 125.4 24.9 315 92-420 135-489 (966)
20 PRK10049 pgaA outer membrane p 99.5 7.9E-11 1.7E-15 128.1 38.8 321 91-420 33-426 (765)
21 KOG4422 Uncharacterized conser 99.5 4.7E-11 1E-15 112.3 30.1 251 91-346 133-426 (625)
22 TIGR00540 hemY_coli hemY prote 99.5 6.8E-11 1.5E-15 119.3 33.8 292 111-412 85-397 (409)
23 PRK10747 putative protoheme IX 99.5 1.3E-10 2.9E-15 116.6 34.3 291 112-413 86-389 (398)
24 PRK10049 pgaA outer membrane p 99.5 3.7E-10 8.1E-15 122.8 40.0 319 91-415 67-457 (765)
25 PF13429 TPR_15: Tetratricopep 99.5 1.6E-13 3.5E-18 131.4 12.1 256 113-376 13-271 (280)
26 PRK14574 hmsH outer membrane p 99.4 1.2E-09 2.5E-14 117.3 38.0 295 115-414 109-479 (822)
27 PF13429 TPR_15: Tetratricopep 99.4 9.7E-13 2.1E-17 126.0 12.1 257 148-412 13-275 (280)
28 COG3071 HemY Uncharacterized e 99.4 1.4E-09 2.9E-14 102.2 32.0 300 113-420 87-396 (400)
29 PRK14574 hmsH outer membrane p 99.4 2.6E-09 5.7E-14 114.6 37.7 318 91-414 120-513 (822)
30 PRK09782 bacteriophage N4 rece 99.4 1.3E-09 2.9E-14 119.2 36.0 299 107-415 375-707 (987)
31 COG2956 Predicted N-acetylgluc 99.4 1.2E-09 2.6E-14 99.6 28.8 285 121-417 48-350 (389)
32 PRK09782 bacteriophage N4 rece 99.4 1.5E-09 3.4E-14 118.7 33.8 260 107-378 476-736 (987)
33 PF13041 PPR_2: PPR repeat fam 99.4 1.8E-12 3.8E-17 88.0 6.7 49 106-154 1-49 (50)
34 PF13041 PPR_2: PPR repeat fam 99.4 1.9E-12 4.2E-17 87.8 6.7 50 141-190 1-50 (50)
35 KOG1126 DNA-binding cell divis 99.4 2.8E-10 6.2E-15 113.2 24.4 281 123-417 334-623 (638)
36 TIGR02521 type_IV_pilW type IV 99.3 1.5E-09 3.3E-14 100.4 26.8 201 107-312 30-231 (234)
37 TIGR00540 hemY_coli hemY prote 99.3 2E-09 4.3E-14 108.6 28.8 305 146-461 85-407 (409)
38 TIGR02521 type_IV_pilW type IV 99.3 5.7E-09 1.2E-13 96.5 26.7 201 142-346 30-231 (234)
39 KOG1126 DNA-binding cell divis 99.3 2E-09 4.2E-14 107.3 24.1 262 107-379 352-617 (638)
40 KOG1155 Anaphase-promoting com 99.3 9.9E-09 2.1E-13 98.0 27.7 252 116-377 235-490 (559)
41 PRK10747 putative protoheme IX 99.3 2E-08 4.3E-13 100.9 32.0 260 108-379 117-387 (398)
42 COG2956 Predicted N-acetylgluc 99.2 5.5E-08 1.2E-12 89.0 29.3 279 91-379 53-344 (389)
43 KOG1155 Anaphase-promoting com 99.2 4.6E-08 9.9E-13 93.5 29.6 302 102-413 158-494 (559)
44 KOG2076 RNA polymerase III tra 99.2 5.8E-08 1.3E-12 100.0 32.0 323 85-412 151-510 (895)
45 PRK12370 invasion protein regu 99.2 1.1E-08 2.5E-13 107.2 28.1 262 141-415 254-536 (553)
46 PRK12370 invasion protein regu 99.2 5.1E-08 1.1E-12 102.3 31.7 232 106-346 254-501 (553)
47 KOG4318 Bicoid mRNA stability 99.1 1.3E-09 2.8E-14 111.4 16.7 225 93-333 10-285 (1088)
48 KOG2003 TPR repeat-containing 99.1 2.4E-09 5.1E-14 101.6 15.4 215 222-447 428-683 (840)
49 KOG1840 Kinesin light chain [C 99.1 7.9E-08 1.7E-12 96.7 25.0 254 92-345 183-477 (508)
50 KOG1129 TPR repeat-containing 99.0 2.5E-08 5.5E-13 91.1 18.2 235 147-421 227-463 (478)
51 KOG2002 TPR-containing nuclear 99.0 1.4E-06 3.1E-11 90.7 32.7 335 106-453 268-709 (1018)
52 KOG1915 Cell cycle control pro 99.0 3.8E-06 8.2E-11 80.9 32.5 316 91-415 91-537 (677)
53 KOG0547 Translocase of outer m 99.0 6.1E-07 1.3E-11 86.6 27.3 190 216-411 363-563 (606)
54 KOG2076 RNA polymerase III tra 99.0 3.1E-06 6.8E-11 87.6 32.7 291 118-414 149-478 (895)
55 KOG0495 HAT repeat protein [RN 99.0 1.8E-05 4E-10 79.2 36.5 291 116-414 414-748 (913)
56 KOG1174 Anaphase-promoting com 99.0 2.2E-06 4.8E-11 81.1 28.6 304 104-415 190-501 (564)
57 COG3071 HemY Uncharacterized e 99.0 6.1E-06 1.3E-10 78.1 31.5 275 93-379 104-387 (400)
58 KOG0495 HAT repeat protein [RN 98.9 9.4E-06 2E-10 81.2 33.6 308 98-414 469-782 (913)
59 KOG4318 Bicoid mRNA stability 98.9 5.6E-08 1.2E-12 99.7 18.1 257 129-423 11-274 (1088)
60 PF12569 NARP1: NMDA receptor- 98.9 2.9E-06 6.3E-11 86.6 30.4 285 115-412 11-332 (517)
61 KOG1129 TPR repeat-containing 98.9 2.6E-07 5.6E-12 84.7 19.3 232 111-350 226-461 (478)
62 KOG2002 TPR-containing nuclear 98.9 2E-06 4.3E-11 89.7 27.5 301 107-413 413-744 (1018)
63 KOG2003 TPR repeat-containing 98.9 2.2E-06 4.8E-11 81.9 25.0 254 153-412 429-687 (840)
64 KOG1840 Kinesin light chain [C 98.9 1.2E-06 2.7E-11 88.2 24.6 233 179-412 200-477 (508)
65 cd05804 StaR_like StaR_like; a 98.8 2.2E-05 4.7E-10 78.1 33.3 302 108-415 6-337 (355)
66 PRK11189 lipoprotein NlpI; Pro 98.8 7.7E-06 1.7E-10 78.7 28.9 197 108-314 64-266 (296)
67 PRK11189 lipoprotein NlpI; Pro 98.8 5.2E-06 1.1E-10 79.9 26.6 219 122-350 40-268 (296)
68 COG3063 PilF Tfp pilus assembl 98.8 7.3E-06 1.6E-10 72.0 24.0 182 149-334 41-222 (250)
69 PF12854 PPR_1: PPR repeat 98.7 1.3E-08 2.8E-13 62.1 4.0 32 103-134 2-33 (34)
70 KOG1173 Anaphase-promoting com 98.7 2.2E-05 4.8E-10 77.5 27.9 265 107-378 243-514 (611)
71 PF12854 PPR_1: PPR repeat 98.7 1.8E-08 3.9E-13 61.5 3.9 26 176-201 5-30 (34)
72 PF04733 Coatomer_E: Coatomer 98.7 1.3E-06 2.8E-11 83.0 18.6 232 108-354 35-272 (290)
73 KOG0547 Translocase of outer m 98.7 1.2E-05 2.6E-10 77.9 23.8 220 154-380 337-564 (606)
74 COG3063 PilF Tfp pilus assembl 98.6 3.6E-05 7.7E-10 67.8 23.4 198 110-312 37-235 (250)
75 cd05804 StaR_like StaR_like; a 98.6 6.9E-05 1.5E-09 74.4 29.0 259 115-379 50-333 (355)
76 KOG1915 Cell cycle control pro 98.6 0.00058 1.3E-08 66.3 32.6 312 92-412 160-583 (677)
77 KOG1070 rRNA processing protei 98.6 3.4E-05 7.3E-10 83.5 26.7 224 107-338 1457-1690(1710)
78 KOG1173 Anaphase-promoting com 98.6 5.6E-05 1.2E-09 74.7 26.1 264 142-413 243-517 (611)
79 KOG1070 rRNA processing protei 98.5 1.5E-05 3.3E-10 86.1 22.5 203 212-418 1457-1667(1710)
80 PF12569 NARP1: NMDA receptor- 98.5 6.4E-05 1.4E-09 76.9 26.1 257 151-416 12-293 (517)
81 KOG2047 mRNA splicing factor [ 98.5 0.00052 1.1E-08 69.0 31.2 167 251-419 389-583 (835)
82 PF04733 Coatomer_E: Coatomer 98.5 8.4E-06 1.8E-10 77.5 16.7 248 117-380 10-263 (290)
83 KOG2047 mRNA splicing factor [ 98.4 0.0014 3E-08 66.1 30.1 291 108-403 387-712 (835)
84 PRK04841 transcriptional regul 98.4 0.00054 1.2E-08 77.2 31.3 300 115-415 416-761 (903)
85 TIGR03302 OM_YfiO outer membra 98.4 8.9E-05 1.9E-09 68.9 20.7 186 106-313 31-232 (235)
86 PLN02789 farnesyltranstransfer 98.4 0.00065 1.4E-08 65.5 26.9 182 108-296 37-229 (320)
87 TIGR03302 OM_YfiO outer membra 98.3 0.00012 2.5E-09 68.1 20.8 186 141-349 31-234 (235)
88 KOG1174 Anaphase-promoting com 98.3 0.00066 1.4E-08 64.8 25.1 268 141-413 192-466 (564)
89 KOG4162 Predicted calmodulin-b 98.3 0.0019 4E-08 66.6 30.1 351 97-462 312-788 (799)
90 PLN02789 farnesyltranstransfer 98.3 0.0018 3.9E-08 62.6 28.4 203 156-364 50-267 (320)
91 COG5010 TadD Flp pilus assembl 98.3 0.00011 2.3E-09 66.2 17.7 158 112-274 70-227 (257)
92 KOG1156 N-terminal acetyltrans 98.3 0.0053 1.1E-07 62.2 31.1 178 107-291 74-259 (700)
93 PRK10370 formate-dependent nit 98.3 0.00024 5.2E-09 63.7 20.3 149 114-278 22-173 (198)
94 PRK04841 transcriptional regul 98.2 0.0014 2.9E-08 74.0 30.3 266 148-414 414-720 (903)
95 PRK15179 Vi polysaccharide bio 98.2 0.0007 1.5E-08 72.1 25.9 162 139-312 82-244 (694)
96 KOG3081 Vesicle coat complex C 98.2 0.0015 3.4E-08 58.9 23.8 179 164-354 94-278 (299)
97 KOG1914 mRNA cleavage and poly 98.2 0.0067 1.5E-07 60.2 30.1 128 285-413 367-500 (656)
98 PRK10370 formate-dependent nit 98.2 0.0004 8.6E-09 62.3 20.0 149 150-314 23-174 (198)
99 KOG4340 Uncharacterized conser 98.2 0.0007 1.5E-08 61.9 20.9 193 111-314 13-208 (459)
100 TIGR00756 PPR pentatricopeptid 98.2 4E-06 8.7E-11 51.6 4.5 33 110-142 2-34 (35)
101 TIGR00756 PPR pentatricopeptid 98.1 4.5E-06 9.7E-11 51.4 4.4 33 145-177 2-34 (35)
102 KOG2376 Signal recognition par 98.1 0.0062 1.3E-07 61.1 28.0 48 155-207 91-139 (652)
103 PRK15359 type III secretion sy 98.1 0.00032 6.9E-09 59.5 16.8 88 151-240 32-119 (144)
104 PF13812 PPR_3: Pentatricopept 98.1 4.2E-06 9.1E-11 51.2 3.9 29 146-174 4-32 (34)
105 PF13812 PPR_3: Pentatricopept 98.1 4.9E-06 1.1E-10 50.9 4.1 33 109-141 2-34 (34)
106 PRK15359 type III secretion sy 98.1 0.0002 4.4E-09 60.6 15.2 110 104-216 20-129 (144)
107 PRK15179 Vi polysaccharide bio 98.1 0.0014 3E-08 69.9 24.4 183 104-298 82-269 (694)
108 KOG1128 Uncharacterized conser 98.1 0.00035 7.5E-09 71.4 18.6 213 110-345 400-614 (777)
109 KOG3785 Uncharacterized conser 98.1 0.00067 1.5E-08 63.4 18.9 121 114-242 63-214 (557)
110 COG4783 Putative Zn-dependent 98.1 0.0025 5.3E-08 62.6 23.5 184 105-313 271-454 (484)
111 PRK14720 transcript cleavage f 98.0 0.0017 3.6E-08 70.1 24.3 225 96-330 18-268 (906)
112 KOG0985 Vesicle coat protein c 98.0 0.0032 7E-08 66.6 25.2 267 107-404 1077-1373(1666)
113 KOG1128 Uncharacterized conser 98.0 0.0002 4.3E-09 73.1 15.8 193 108-313 424-616 (777)
114 COG5010 TadD Flp pilus assembl 98.0 0.002 4.2E-08 58.2 20.4 158 147-309 70-227 (257)
115 TIGR02552 LcrH_SycD type III s 98.0 0.00031 6.7E-09 58.8 15.0 93 182-277 21-113 (135)
116 KOG3785 Uncharacterized conser 98.0 0.0035 7.6E-08 58.8 22.2 293 112-418 155-494 (557)
117 KOG3081 Vesicle coat complex C 98.0 0.0011 2.4E-08 59.9 18.2 116 152-278 117-236 (299)
118 PF06239 ECSIT: Evolutionarily 98.0 0.00016 3.6E-09 63.4 12.9 91 103-193 42-153 (228)
119 KOG3616 Selective LIM binding 98.0 0.00098 2.1E-08 68.0 19.9 191 185-408 739-931 (1636)
120 PF08579 RPM2: Mitochondrial r 98.0 0.0002 4.3E-09 55.8 11.4 80 111-190 28-116 (120)
121 TIGR02552 LcrH_SycD type III s 97.9 0.00044 9.5E-09 57.9 14.5 118 200-323 5-122 (135)
122 KOG2053 Mitochondrial inherita 97.9 0.04 8.8E-07 58.1 30.8 199 111-314 44-256 (932)
123 KOG1125 TPR repeat-containing 97.9 0.00078 1.7E-08 67.2 17.6 220 223-453 295-527 (579)
124 KOG4340 Uncharacterized conser 97.9 0.0023 5E-08 58.6 19.2 284 121-413 125-442 (459)
125 KOG3617 WD40 and TPR repeat-co 97.9 0.004 8.7E-08 64.6 22.8 94 106-206 724-828 (1416)
126 KOG1125 TPR repeat-containing 97.9 0.0017 3.7E-08 64.8 19.7 216 189-410 296-523 (579)
127 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00046 9.9E-09 68.0 15.9 126 179-312 170-296 (395)
128 KOG3617 WD40 and TPR repeat-co 97.9 0.0012 2.7E-08 68.2 18.8 228 107-379 756-993 (1416)
129 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00055 1.2E-08 67.5 16.1 124 146-276 172-295 (395)
130 KOG0624 dsRNA-activated protei 97.9 0.024 5.3E-07 53.2 27.4 298 106-415 36-371 (504)
131 PF10037 MRP-S27: Mitochondria 97.9 0.00018 4E-09 71.1 12.4 126 101-226 59-186 (429)
132 KOG3060 Uncharacterized conser 97.8 0.021 4.5E-07 51.5 23.4 83 226-311 99-181 (289)
133 PF01535 PPR: PPR repeat; Int 97.8 1.8E-05 3.9E-10 47.2 3.0 29 110-138 2-30 (31)
134 KOG2376 Signal recognition par 97.8 0.034 7.4E-07 56.0 26.9 56 188-243 185-254 (652)
135 PF01535 PPR: PPR repeat; Int 97.8 2.7E-05 5.9E-10 46.3 3.5 31 386-416 1-31 (31)
136 KOG3060 Uncharacterized conser 97.8 0.018 3.9E-07 51.9 22.4 187 121-314 25-221 (289)
137 PF10037 MRP-S27: Mitochondria 97.8 0.00033 7.2E-09 69.3 12.9 124 173-297 61-186 (429)
138 KOG3616 Selective LIM binding 97.8 0.0048 1E-07 63.2 20.8 25 390-414 1000-1024(1636)
139 KOG0985 Vesicle coat protein c 97.8 0.034 7.4E-07 59.3 26.8 211 93-334 967-1181(1666)
140 KOG1156 N-terminal acetyltrans 97.7 0.046 1E-06 55.7 26.5 275 118-400 51-335 (700)
141 COG4783 Putative Zn-dependent 97.7 0.0057 1.2E-07 60.1 19.7 145 110-278 309-454 (484)
142 PF09976 TPR_21: Tetratricopep 97.7 0.003 6.4E-08 53.7 16.1 85 186-273 56-142 (145)
143 PF08579 RPM2: Mitochondrial r 97.7 0.00049 1.1E-08 53.7 9.9 80 146-225 28-116 (120)
144 PRK14720 transcript cleavage f 97.7 0.006 1.3E-07 66.0 21.5 231 141-396 29-268 (906)
145 PF06239 ECSIT: Evolutionarily 97.7 0.001 2.2E-08 58.6 12.7 88 247-334 45-153 (228)
146 PF09976 TPR_21: Tetratricopep 97.6 0.0038 8.2E-08 53.0 15.7 128 179-310 13-144 (145)
147 KOG1914 mRNA cleavage and poly 97.5 0.022 4.8E-07 56.7 20.7 129 179-310 367-498 (656)
148 KOG4162 Predicted calmodulin-b 97.5 0.17 3.6E-06 52.9 30.1 249 162-416 463-785 (799)
149 KOG0548 Molecular co-chaperone 97.5 0.098 2.1E-06 52.3 24.9 321 107-458 35-452 (539)
150 PF05843 Suf: Suppressor of fo 97.5 0.0031 6.6E-08 60.1 14.5 129 145-277 3-135 (280)
151 cd00189 TPR Tetratricopeptide 97.5 0.0025 5.3E-08 48.6 11.5 94 111-206 3-96 (100)
152 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0052 1.1E-07 49.8 13.9 97 110-208 4-106 (119)
153 cd00189 TPR Tetratricopeptide 97.5 0.0022 4.8E-08 48.9 11.1 23 287-309 71-93 (100)
154 PF14938 SNAP: Soluble NSF att 97.4 0.015 3.2E-07 55.6 18.4 175 108-313 35-225 (282)
155 PF05843 Suf: Suppressor of fo 97.4 0.0031 6.8E-08 60.0 13.2 129 179-312 2-135 (280)
156 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0078 1.7E-07 48.8 13.7 97 146-242 5-105 (119)
157 PRK02603 photosystem I assembl 97.3 0.013 2.7E-07 51.4 15.0 62 145-206 37-100 (172)
158 PLN03088 SGT1, suppressor of 97.2 0.0075 1.6E-07 59.6 14.1 85 190-277 14-98 (356)
159 PRK02603 photosystem I assembl 97.2 0.018 3.9E-07 50.4 15.2 93 107-200 34-128 (172)
160 KOG3941 Intermediate in Toll s 97.2 0.0039 8.5E-08 56.8 10.5 90 103-192 62-172 (406)
161 CHL00033 ycf3 photosystem I as 97.2 0.0093 2E-07 52.0 12.9 79 180-260 37-117 (168)
162 PLN03088 SGT1, suppressor of 97.1 0.01 2.2E-07 58.7 13.9 86 154-241 13-98 (356)
163 PF12895 Apc3: Anaphase-promot 97.1 0.0015 3.3E-08 49.5 6.0 19 255-273 31-49 (84)
164 PF12895 Apc3: Anaphase-promot 97.0 0.0013 2.8E-08 49.9 5.2 81 121-203 2-83 (84)
165 PRK15363 pathogenicity island 97.0 0.048 1E-06 46.0 14.7 84 190-276 47-130 (157)
166 PRK15363 pathogenicity island 97.0 0.016 3.5E-07 48.8 11.9 96 215-313 37-132 (157)
167 PRK10866 outer membrane biogen 97.0 0.23 4.9E-06 46.1 20.6 57 254-310 180-238 (243)
168 smart00463 SMR Small MutS-rela 97.0 0.0034 7.5E-08 47.0 6.9 76 428-509 2-78 (80)
169 CHL00033 ycf3 photosystem I as 96.9 0.028 6E-07 49.0 13.6 64 108-171 35-100 (168)
170 PRK10153 DNA-binding transcrip 96.9 0.094 2E-06 54.3 19.0 146 173-323 332-490 (517)
171 KOG1127 TPR repeat-containing 96.9 0.15 3.3E-06 54.7 19.9 162 180-348 494-660 (1238)
172 KOG2796 Uncharacterized conser 96.9 0.17 3.6E-06 46.1 17.4 131 146-278 180-315 (366)
173 KOG0548 Molecular co-chaperone 96.8 0.32 6.9E-06 48.7 20.7 187 111-313 227-421 (539)
174 PF14938 SNAP: Soluble NSF att 96.7 0.1 2.2E-06 49.9 16.8 147 216-380 97-264 (282)
175 PRK10153 DNA-binding transcrip 96.7 0.15 3.3E-06 52.8 19.1 63 212-277 419-481 (517)
176 PF14559 TPR_19: Tetratricopep 96.7 0.0059 1.3E-07 43.9 6.3 20 255-274 31-50 (68)
177 PF12688 TPR_5: Tetratrico pep 96.7 0.11 2.4E-06 42.1 14.1 52 154-205 12-65 (120)
178 PF14559 TPR_19: Tetratricopep 96.7 0.0083 1.8E-07 43.1 7.0 52 190-242 3-54 (68)
179 KOG1127 TPR repeat-containing 96.7 0.095 2.1E-06 56.1 16.9 161 109-275 493-656 (1238)
180 KOG0624 dsRNA-activated protei 96.7 0.62 1.3E-05 44.2 25.7 266 105-380 66-368 (504)
181 PF12688 TPR_5: Tetratrico pep 96.6 0.16 3.6E-06 41.1 14.4 105 114-224 7-117 (120)
182 COG4700 Uncharacterized protei 96.6 0.43 9.4E-06 41.2 18.6 99 211-312 87-188 (251)
183 PRK10866 outer membrane biogen 96.6 0.64 1.4E-05 43.2 20.2 173 149-343 38-237 (243)
184 PF13432 TPR_16: Tetratricopep 96.5 0.015 3.4E-07 41.3 7.3 54 222-277 6-59 (65)
185 KOG2053 Mitochondrial inherita 96.5 1.6 3.4E-05 46.8 32.3 224 119-350 20-258 (932)
186 PF12921 ATP13: Mitochondrial 96.4 0.072 1.6E-06 43.6 11.6 26 178-203 2-27 (126)
187 KOG0553 TPR repeat-containing 96.4 0.029 6.3E-07 51.9 9.9 99 223-327 91-190 (304)
188 PF04184 ST7: ST7 protein; In 96.4 1.2 2.6E-05 44.6 21.2 164 114-291 174-338 (539)
189 COG4700 Uncharacterized protei 96.3 0.62 1.4E-05 40.2 18.4 134 175-310 86-219 (251)
190 KOG0553 TPR repeat-containing 96.3 0.061 1.3E-06 49.9 11.1 84 191-277 94-177 (304)
191 PF13525 YfiO: Outer membrane 96.2 0.56 1.2E-05 42.3 17.5 176 113-302 10-196 (203)
192 PF12921 ATP13: Mitochondrial 96.2 0.064 1.4E-06 43.9 10.2 47 175-221 49-96 (126)
193 PLN03098 LPA1 LOW PSII ACCUMUL 96.2 0.24 5.2E-06 49.2 15.6 65 106-172 73-141 (453)
194 PF13432 TPR_16: Tetratricopep 96.2 0.024 5.2E-07 40.3 6.6 55 186-241 5-59 (65)
195 PF13414 TPR_11: TPR repeat; P 96.2 0.029 6.3E-07 40.4 7.2 59 215-275 5-64 (69)
196 PF13281 DUF4071: Domain of un 96.1 1.1 2.3E-05 44.0 19.5 32 282-313 303-334 (374)
197 PF03704 BTAD: Bacterial trans 96.1 0.044 9.5E-07 46.4 9.0 70 215-286 64-138 (146)
198 PF13414 TPR_11: TPR repeat; P 96.0 0.041 8.8E-07 39.6 7.3 63 178-241 3-66 (69)
199 KOG3941 Intermediate in Toll s 96.0 0.1 2.2E-06 47.9 11.0 82 264-345 87-186 (406)
200 PRK10803 tol-pal system protei 96.0 0.12 2.6E-06 48.5 12.0 97 214-313 144-246 (263)
201 PRK10803 tol-pal system protei 95.9 0.14 3E-06 48.0 12.2 97 109-207 144-246 (263)
202 PF03704 BTAD: Bacterial trans 95.9 0.056 1.2E-06 45.8 8.9 97 107-204 2-122 (146)
203 KOG2796 Uncharacterized conser 95.7 1.6 3.5E-05 40.0 21.1 143 179-325 178-325 (366)
204 PF13371 TPR_9: Tetratricopept 95.7 0.08 1.7E-06 38.5 7.9 54 222-277 4-57 (73)
205 PF13170 DUF4003: Protein of u 95.7 2.1 4.5E-05 41.0 20.4 23 161-183 80-102 (297)
206 COG3898 Uncharacterized membra 95.7 2.2 4.9E-05 41.3 30.3 298 110-419 84-397 (531)
207 COG5107 RNA14 Pre-mRNA 3'-end 95.7 0.54 1.2E-05 46.2 15.0 129 145-277 399-530 (660)
208 smart00299 CLH Clathrin heavy 95.6 0.89 1.9E-05 38.0 15.1 85 112-204 11-95 (140)
209 PF04840 Vps16_C: Vps16, C-ter 95.6 2.3 5.1E-05 41.1 20.2 106 250-375 178-284 (319)
210 COG4235 Cytochrome c biogenesi 95.5 0.74 1.6E-05 43.0 15.1 99 212-313 155-256 (287)
211 PF13170 DUF4003: Protein of u 95.5 2.5 5.5E-05 40.4 20.0 130 194-325 78-223 (297)
212 KOG1538 Uncharacterized conser 95.5 0.94 2E-05 46.5 16.4 217 107-346 597-845 (1081)
213 smart00299 CLH Clathrin heavy 95.4 1.1 2.3E-05 37.6 14.9 85 147-239 11-95 (140)
214 COG5107 RNA14 Pre-mRNA 3'-end 95.4 3.2 6.8E-05 41.1 27.6 128 286-414 399-531 (660)
215 COG4235 Cytochrome c biogenesi 95.3 1 2.2E-05 42.2 15.0 105 246-352 153-261 (287)
216 KOG1538 Uncharacterized conser 95.3 3.2 7E-05 42.8 19.4 95 103-202 551-656 (1081)
217 PF13424 TPR_12: Tetratricopep 95.2 0.057 1.2E-06 40.0 5.7 63 108-170 5-73 (78)
218 KOG1130 Predicted G-alpha GTPa 95.1 0.34 7.3E-06 47.0 11.7 193 117-310 26-261 (639)
219 PF13424 TPR_12: Tetratricopep 95.1 0.083 1.8E-06 39.1 6.5 24 251-274 48-71 (78)
220 PF13371 TPR_9: Tetratricopept 95.1 0.1 2.2E-06 37.9 6.7 56 186-242 3-58 (73)
221 KOG2041 WD40 repeat protein [G 95.0 3.3 7.2E-05 43.1 18.9 175 140-339 689-873 (1189)
222 PF04053 Coatomer_WDAD: Coatom 94.9 0.62 1.3E-05 47.2 13.9 157 117-310 270-428 (443)
223 PLN03098 LPA1 LOW PSII ACCUMUL 94.7 0.83 1.8E-05 45.5 13.6 66 140-207 72-141 (453)
224 PF13281 DUF4071: Domain of un 94.7 4.8 0.0001 39.6 20.2 34 318-351 304-338 (374)
225 PRK15331 chaperone protein Sic 94.6 1.2 2.5E-05 38.0 12.3 88 222-312 46-133 (165)
226 PF04840 Vps16_C: Vps16, C-ter 94.2 5.7 0.00012 38.5 25.3 107 286-409 179-286 (319)
227 PF09205 DUF1955: Domain of un 94.2 2.5 5.5E-05 34.4 13.1 64 215-280 88-151 (161)
228 KOG2610 Uncharacterized conser 94.1 1.6 3.6E-05 41.3 13.4 116 121-239 116-235 (491)
229 KOG1130 Predicted G-alpha GTPa 94.1 0.3 6.6E-06 47.3 8.8 259 93-351 37-348 (639)
230 PF07035 Mic1: Colon cancer-as 94.1 3.5 7.6E-05 35.5 15.9 133 129-276 15-147 (167)
231 PRK15331 chaperone protein Sic 94.0 1.9 4.1E-05 36.8 12.5 86 189-277 48-133 (165)
232 PF04053 Coatomer_WDAD: Coatom 94.0 0.92 2E-05 46.0 12.6 134 107-274 294-427 (443)
233 PF10300 DUF3808: Protein of u 94.0 3 6.6E-05 42.9 16.6 145 163-314 177-335 (468)
234 PF13525 YfiO: Outer membrane 94.0 4.5 9.8E-05 36.3 19.3 170 149-334 11-193 (203)
235 COG0457 NrfG FOG: TPR repeat [ 93.8 4.7 0.0001 35.9 24.9 228 121-350 36-268 (291)
236 COG1747 Uncharacterized N-term 93.5 9.6 0.00021 38.5 20.3 182 141-330 64-250 (711)
237 COG3118 Thioredoxin domain-con 93.4 6.8 0.00015 36.8 18.3 143 186-333 142-286 (304)
238 KOG0550 Molecular chaperone (D 93.3 7.3 0.00016 38.3 16.4 151 222-379 178-347 (486)
239 COG3898 Uncharacterized membra 93.3 8.6 0.00019 37.5 25.3 268 105-388 115-398 (531)
240 KOG1585 Protein required for f 93.3 6.4 0.00014 35.8 18.6 209 108-342 31-251 (308)
241 PF10300 DUF3808: Protein of u 93.2 9.9 0.00021 39.2 18.8 161 111-275 191-373 (468)
242 PF01713 Smr: Smr domain; Int 93.0 0.53 1.2E-05 35.3 7.1 70 431-508 2-80 (83)
243 COG3629 DnrI DNA-binding trans 92.8 1.4 3.1E-05 41.3 10.8 77 214-292 154-235 (280)
244 PF07035 Mic1: Colon cancer-as 92.8 5.8 0.00013 34.1 14.8 133 93-241 14-148 (167)
245 COG3118 Thioredoxin domain-con 92.8 8.6 0.00019 36.1 15.6 51 119-170 145-195 (304)
246 PF07079 DUF1347: Protein of u 92.8 11 0.00025 37.4 24.3 272 118-414 16-327 (549)
247 PF09205 DUF1955: Domain of un 92.5 5 0.00011 32.7 14.1 68 248-316 85-152 (161)
248 KOG0543 FKBP-type peptidyl-pro 92.4 2.4 5.1E-05 41.4 12.0 138 115-277 215-354 (397)
249 KOG2114 Vacuolar assembly/sort 92.2 5.2 0.00011 42.7 14.9 180 107-310 333-516 (933)
250 COG3629 DnrI DNA-binding trans 92.2 2 4.4E-05 40.3 11.0 80 144-224 154-238 (280)
251 KOG0543 FKBP-type peptidyl-pro 92.2 2.8 6E-05 41.0 12.1 97 213-313 257-355 (397)
252 KOG2041 WD40 repeat protein [G 92.2 18 0.00038 38.2 19.0 26 212-237 851-876 (1189)
253 KOG4555 TPR repeat-containing 91.8 6.1 0.00013 32.2 12.0 93 116-209 51-146 (175)
254 PF00637 Clathrin: Region in C 91.8 0.0063 1.4E-07 51.5 -5.5 52 151-202 15-66 (143)
255 KOG2610 Uncharacterized conser 91.7 5.1 0.00011 38.2 12.8 153 155-310 115-273 (491)
256 COG1729 Uncharacterized protei 91.2 2.6 5.6E-05 39.0 10.4 98 215-313 144-244 (262)
257 PRK11906 transcriptional regul 91.0 19 0.00041 36.3 17.3 157 179-341 252-430 (458)
258 KOG1550 Extracellular protein 90.8 24 0.00053 37.2 20.1 149 159-314 228-394 (552)
259 PF04184 ST7: ST7 protein; In 90.4 22 0.00048 36.1 17.8 83 178-260 259-342 (539)
260 PF04097 Nic96: Nup93/Nic96; 90.4 24 0.00051 37.8 18.4 43 113-156 116-158 (613)
261 COG4105 ComL DNA uptake lipopr 90.2 15 0.00033 33.8 20.3 56 254-310 172-230 (254)
262 KOG4555 TPR repeat-containing 90.1 9.1 0.0002 31.2 11.7 53 153-206 53-105 (175)
263 PF13428 TPR_14: Tetratricopep 90.0 1.1 2.5E-05 28.7 5.3 18 187-204 10-27 (44)
264 COG1729 Uncharacterized protei 89.9 6.6 0.00014 36.4 11.8 99 179-278 143-244 (262)
265 KOG2280 Vacuolar assembly/sort 89.8 31 0.00066 36.8 21.2 128 267-410 666-795 (829)
266 PF13176 TPR_7: Tetratricopept 89.7 0.84 1.8E-05 27.8 4.2 25 110-134 1-25 (36)
267 PRK11906 transcriptional regul 89.5 24 0.00053 35.5 16.2 75 162-238 323-397 (458)
268 PF13428 TPR_14: Tetratricopep 89.4 1.5 3.3E-05 28.0 5.5 27 216-242 4-30 (44)
269 KOG1550 Extracellular protein 89.4 31 0.00067 36.5 18.2 182 124-316 228-429 (552)
270 KOG0550 Molecular chaperone (D 89.4 24 0.00051 34.9 19.4 187 141-334 166-372 (486)
271 PF10602 RPN7: 26S proteasome 89.2 5.7 0.00012 34.8 10.6 62 179-240 37-100 (177)
272 PF13176 TPR_7: Tetratricopept 89.1 0.83 1.8E-05 27.8 3.9 26 387-412 1-26 (36)
273 COG4105 ComL DNA uptake lipopr 89.1 18 0.0004 33.3 19.2 171 224-414 45-233 (254)
274 cd00923 Cyt_c_Oxidase_Va Cytoc 87.8 4.3 9.2E-05 31.1 7.5 50 158-207 22-71 (103)
275 PRK09687 putative lyase; Provi 87.7 26 0.00056 33.3 28.9 222 105-349 34-265 (280)
276 COG0457 NrfG FOG: TPR repeat [ 87.6 19 0.00042 31.7 28.9 192 157-350 37-234 (291)
277 KOG1920 IkappaB kinase complex 87.3 57 0.0012 36.8 21.1 30 140-170 788-819 (1265)
278 PF10602 RPN7: 26S proteasome 87.2 10 0.00022 33.2 10.9 94 145-240 38-140 (177)
279 KOG2114 Vacuolar assembly/sort 86.2 51 0.0011 35.7 16.7 139 223-381 378-518 (933)
280 PF13512 TPR_18: Tetratricopep 85.5 20 0.00043 29.9 12.1 75 116-190 18-94 (142)
281 KOG1920 IkappaB kinase complex 85.5 55 0.0012 37.0 17.1 17 154-170 862-878 (1265)
282 PF00515 TPR_1: Tetratricopept 85.2 2.4 5.1E-05 25.1 4.3 28 109-136 2-29 (34)
283 KOG4570 Uncharacterized conser 85.2 11 0.00023 35.7 10.2 102 209-312 60-163 (418)
284 COG4649 Uncharacterized protei 85.2 24 0.00052 30.5 14.0 124 154-278 69-196 (221)
285 KOG1941 Acetylcholine receptor 85.1 24 0.00053 34.2 12.7 44 155-198 18-63 (518)
286 PF13374 TPR_10: Tetratricopep 85.0 2.4 5.3E-05 26.3 4.5 29 108-136 2-30 (42)
287 KOG4570 Uncharacterized conser 84.9 4.6 9.9E-05 38.1 7.7 105 101-207 57-164 (418)
288 KOG2066 Vacuolar assembly/sort 84.0 66 0.0014 34.6 23.6 149 115-276 363-532 (846)
289 KOG1941 Acetylcholine receptor 83.7 45 0.00098 32.4 15.1 225 120-344 18-272 (518)
290 PF02284 COX5A: Cytochrome c o 83.4 6.7 0.00015 30.3 6.8 47 161-207 28-74 (108)
291 PF09613 HrpB1_HrpK: Bacterial 83.3 28 0.0006 29.7 13.3 18 260-277 55-72 (160)
292 COG4785 NlpI Lipoprotein NlpI, 83.2 34 0.00075 30.7 15.1 181 120-314 77-267 (297)
293 PF07719 TPR_2: Tetratricopept 83.1 3.3 7.1E-05 24.3 4.3 28 109-136 2-29 (34)
294 PF13512 TPR_18: Tetratricopep 83.1 26 0.00056 29.2 11.7 54 224-277 21-75 (142)
295 PF13929 mRNA_stabil: mRNA sta 82.7 44 0.00095 31.5 15.1 115 159-273 144-262 (292)
296 KOG0276 Vesicle coat complex C 82.3 19 0.00041 37.3 11.4 148 191-379 599-747 (794)
297 cd00923 Cyt_c_Oxidase_Va Cytoc 82.2 10 0.00022 29.1 7.2 48 265-312 23-70 (103)
298 KOG0276 Vesicle coat complex C 81.4 17 0.00038 37.5 10.7 149 121-310 599-747 (794)
299 PF13431 TPR_17: Tetratricopep 80.8 2.4 5.2E-05 25.4 3.0 21 248-268 12-32 (34)
300 PF00637 Clathrin: Region in C 80.3 0.56 1.2E-05 39.4 0.1 83 114-203 13-95 (143)
301 KOG2280 Vacuolar assembly/sort 80.3 89 0.0019 33.5 22.7 300 98-410 422-769 (829)
302 PRK09687 putative lyase; Provi 79.8 57 0.0012 31.0 25.6 205 105-331 65-279 (280)
303 PF08631 SPO22: Meiosis protei 79.8 56 0.0012 31.0 24.6 161 119-283 4-191 (278)
304 PF11207 DUF2989: Protein of u 79.4 18 0.00038 32.1 9.0 73 230-304 123-198 (203)
305 PF02284 COX5A: Cytochrome c o 79.3 7.8 0.00017 30.0 5.9 46 267-312 28-73 (108)
306 PF13374 TPR_10: Tetratricopep 79.0 5.1 0.00011 24.8 4.4 24 252-275 5-28 (42)
307 PF11207 DUF2989: Protein of u 78.5 22 0.00047 31.6 9.3 79 153-233 117-198 (203)
308 PF13929 mRNA_stabil: mRNA sta 77.7 64 0.0014 30.5 15.2 116 227-342 142-262 (292)
309 PF13431 TPR_17: Tetratricopep 77.5 3 6.5E-05 25.0 2.7 22 212-233 12-33 (34)
310 PF02259 FAT: FAT domain; Int 76.8 77 0.0017 30.9 20.7 66 247-312 144-212 (352)
311 COG1747 Uncharacterized N-term 73.7 1.1E+02 0.0025 31.3 22.8 184 103-294 61-249 (711)
312 TIGR02561 HrpB1_HrpK type III 72.9 32 0.0007 28.9 8.4 46 335-381 27-72 (153)
313 PF00515 TPR_1: Tetratricopept 72.9 8.1 0.00017 22.7 3.9 28 387-414 3-30 (34)
314 COG4649 Uncharacterized protei 72.6 64 0.0014 28.0 14.3 142 177-320 58-203 (221)
315 PF07721 TPR_4: Tetratricopept 71.8 5.7 0.00012 22.0 2.7 22 111-132 4-25 (26)
316 COG4785 NlpI Lipoprotein NlpI, 71.8 77 0.0017 28.6 14.1 160 248-416 98-268 (297)
317 COG4455 ImpE Protein of avirul 71.7 28 0.00062 31.3 8.2 76 216-293 4-81 (273)
318 PF09613 HrpB1_HrpK: Bacterial 71.5 64 0.0014 27.6 14.1 52 189-242 21-73 (160)
319 PF13762 MNE1: Mitochondrial s 71.2 61 0.0013 27.2 11.8 94 98-191 27-128 (145)
320 PF02259 FAT: FAT domain; Int 71.1 1.1E+02 0.0023 29.9 18.5 57 358-415 152-214 (352)
321 COG3947 Response regulator con 70.9 96 0.0021 29.4 12.4 59 216-276 282-340 (361)
322 PF07719 TPR_2: Tetratricopept 70.9 9.4 0.0002 22.2 3.9 28 387-414 3-30 (34)
323 PF08631 SPO22: Meiosis protei 70.7 98 0.0021 29.3 24.9 196 110-309 38-271 (278)
324 TIGR02561 HrpB1_HrpK type III 70.6 64 0.0014 27.2 12.3 50 226-278 23-73 (153)
325 TIGR03504 FimV_Cterm FimV C-te 69.6 8.6 0.00019 24.7 3.5 26 390-415 4-29 (44)
326 COG5159 RPN6 26S proteasome re 69.1 76 0.0017 29.8 10.6 55 254-308 8-69 (421)
327 TIGR03504 FimV_Cterm FimV C-te 68.9 12 0.00026 24.0 4.1 23 184-206 5-27 (44)
328 PF13762 MNE1: Mitochondrial s 68.5 70 0.0015 26.8 10.4 82 145-226 41-128 (145)
329 KOG4648 Uncharacterized conser 68.4 14 0.0003 35.4 5.9 53 116-170 105-158 (536)
330 PF13181 TPR_8: Tetratricopept 67.5 13 0.00029 21.7 4.0 28 387-414 3-30 (34)
331 PF13181 TPR_8: Tetratricopept 67.4 17 0.00037 21.2 4.5 27 110-136 3-29 (34)
332 PF11838 ERAP1_C: ERAP1-like C 67.2 1.2E+02 0.0027 29.1 18.4 109 229-342 146-261 (324)
333 PF11663 Toxin_YhaV: Toxin wit 66.6 6.3 0.00014 32.2 2.9 32 120-153 107-138 (140)
334 PRK15180 Vi polysaccharide bio 66.6 45 0.00098 33.6 9.2 123 225-352 301-425 (831)
335 PHA02875 ankyrin repeat protei 66.5 83 0.0018 31.7 12.0 204 93-319 15-230 (413)
336 PF07163 Pex26: Pex26 protein; 64.2 84 0.0018 29.5 9.9 90 182-272 87-181 (309)
337 PF07163 Pex26: Pex26 protein; 64.0 87 0.0019 29.4 10.0 90 147-236 87-181 (309)
338 KOG1464 COP9 signalosome, subu 63.6 1.3E+02 0.0028 28.1 18.3 210 101-311 19-259 (440)
339 PF11838 ERAP1_C: ERAP1-like C 63.4 1.5E+02 0.0032 28.6 19.7 79 265-346 146-229 (324)
340 KOG4077 Cytochrome c oxidase, 63.2 50 0.0011 26.8 7.3 47 161-207 67-113 (149)
341 KOG2063 Vacuolar assembly/sort 63.0 2.5E+02 0.0055 31.3 16.5 27 145-171 506-532 (877)
342 PF04190 DUF410: Protein of un 62.9 1.3E+02 0.0029 28.1 18.8 25 212-236 89-113 (260)
343 COG4455 ImpE Protein of avirul 62.6 53 0.0012 29.6 8.1 75 184-259 7-82 (273)
344 KOG0403 Neoplastic transformat 62.1 1.8E+02 0.0039 29.3 14.8 286 112-416 218-574 (645)
345 KOG3636 Uncharacterized conser 61.4 1.8E+02 0.004 29.1 13.0 87 245-332 179-273 (669)
346 PF11848 DUF3368: Domain of un 60.7 34 0.00073 22.4 5.1 30 191-220 15-44 (48)
347 PF13174 TPR_6: Tetratricopept 60.5 18 0.00039 20.7 3.6 24 113-136 5-28 (33)
348 COG0790 FOG: TPR repeat, SEL1 59.1 1.6E+02 0.0035 27.8 19.5 151 120-280 53-222 (292)
349 PF11848 DUF3368: Domain of un 58.7 40 0.00086 22.1 5.2 32 155-186 14-45 (48)
350 COG3947 Response regulator con 58.4 1.7E+02 0.0037 27.8 16.0 68 253-321 283-355 (361)
351 KOG4077 Cytochrome c oxidase, 58.4 64 0.0014 26.2 7.1 47 267-313 67-113 (149)
352 PF10366 Vps39_1: Vacuolar sor 57.4 87 0.0019 24.7 8.0 26 287-312 42-67 (108)
353 KOG2034 Vacuolar sorting prote 57.3 3E+02 0.0066 30.4 23.1 52 347-400 623-676 (911)
354 KOG3636 Uncharacterized conser 57.2 2.2E+02 0.0047 28.7 15.1 198 95-295 41-271 (669)
355 KOG4234 TPR repeat-containing 56.9 1.1E+02 0.0025 27.2 9.0 86 224-313 106-197 (271)
356 smart00638 LPD_N Lipoprotein N 56.7 2.7E+02 0.0059 29.6 25.5 61 106-171 308-368 (574)
357 TIGR02508 type_III_yscG type I 56.5 93 0.002 24.2 8.4 77 335-415 22-98 (115)
358 PF10345 Cohesin_load: Cohesin 56.4 2.8E+02 0.0061 29.8 20.0 197 105-311 27-252 (608)
359 PRK13342 recombination factor 56.3 2.3E+02 0.005 28.7 19.1 33 262-294 243-275 (413)
360 PRK15180 Vi polysaccharide bio 56.3 1.1E+02 0.0024 31.0 9.9 120 120-243 301-421 (831)
361 KOG1586 Protein required for f 56.2 1.6E+02 0.0036 26.9 15.2 22 293-314 163-184 (288)
362 COG2976 Uncharacterized protei 55.6 1.5E+02 0.0033 26.3 14.3 88 221-314 97-189 (207)
363 PF08311 Mad3_BUB1_I: Mad3/BUB 55.4 1E+02 0.0022 25.1 8.4 43 231-273 81-123 (126)
364 KOG2066 Vacuolar assembly/sort 54.6 2.8E+02 0.0061 30.2 12.9 24 356-380 509-532 (846)
365 PF06552 TOM20_plant: Plant sp 54.2 1.5E+02 0.0033 25.9 10.7 75 230-315 52-138 (186)
366 KOG3807 Predicted membrane pro 54.2 2.1E+02 0.0046 27.6 13.5 109 155-279 228-341 (556)
367 KOG0686 COP9 signalosome, subu 52.9 2.5E+02 0.0054 28.1 15.0 64 108-171 150-215 (466)
368 KOG1586 Protein required for f 52.3 1.9E+02 0.0041 26.6 13.4 27 257-283 162-188 (288)
369 PRK10564 maltose regulon perip 51.5 30 0.00066 32.8 5.1 43 104-146 252-295 (303)
370 smart00028 TPR Tetratricopepti 51.4 29 0.00063 18.8 3.6 27 110-136 3-29 (34)
371 PF11846 DUF3366: Domain of un 51.4 66 0.0014 28.4 7.3 31 246-276 141-171 (193)
372 PF14689 SPOB_a: Sensor_kinase 50.3 52 0.0011 22.9 5.0 23 218-240 28-50 (62)
373 KOG4648 Uncharacterized conser 49.0 94 0.002 30.1 7.8 88 151-241 105-193 (536)
374 PF11846 DUF3366: Domain of un 48.4 88 0.0019 27.6 7.6 32 175-206 141-172 (193)
375 PF06552 TOM20_plant: Plant sp 48.3 1.7E+02 0.0036 25.7 8.6 91 111-209 31-138 (186)
376 PRK14958 DNA polymerase III su 48.2 2.4E+02 0.0052 29.5 11.6 37 176-213 244-280 (509)
377 COG5159 RPN6 26S proteasome re 48.1 2.5E+02 0.0054 26.6 16.7 198 114-312 9-234 (421)
378 KOG2297 Predicted translation 47.5 2.6E+02 0.0057 26.7 16.8 71 224-305 266-342 (412)
379 cd00280 TRFH Telomeric Repeat 47.5 1.3E+02 0.0029 26.3 7.9 22 220-241 118-139 (200)
380 PF11663 Toxin_YhaV: Toxin wit 47.4 23 0.00049 29.1 3.1 29 192-222 109-137 (140)
381 KOG4234 TPR repeat-containing 47.1 2.1E+02 0.0046 25.6 9.9 54 153-207 105-163 (271)
382 cd08819 CARD_MDA5_2 Caspase ac 47.0 1.2E+02 0.0027 22.8 6.8 11 194-204 52-62 (88)
383 PF04910 Tcf25: Transcriptiona 46.8 3E+02 0.0066 27.2 14.3 101 212-312 39-167 (360)
384 KOG3807 Predicted membrane pro 46.7 1.8E+02 0.0039 28.1 9.2 120 122-254 230-352 (556)
385 COG0735 Fur Fe2+/Zn2+ uptake r 46.1 1.1E+02 0.0024 25.6 7.4 61 96-157 9-69 (145)
386 PF10579 Rapsyn_N: Rapsyn N-te 46.1 59 0.0013 24.0 4.8 44 296-339 18-64 (80)
387 PF10579 Rapsyn_N: Rapsyn N-te 45.2 66 0.0014 23.7 4.9 14 183-196 48-61 (80)
388 PRK13800 putative oxidoreducta 44.8 5.2E+02 0.011 29.4 25.7 123 282-412 754-879 (897)
389 PF07575 Nucleopor_Nup85: Nup8 44.6 1.2E+02 0.0026 32.2 9.1 26 335-360 512-538 (566)
390 KOG0292 Vesicle coat complex C 44.5 1.4E+02 0.0031 32.8 9.1 175 121-346 606-781 (1202)
391 PHA02875 ankyrin repeat protei 44.2 86 0.0019 31.6 7.8 177 117-319 8-196 (413)
392 PF09670 Cas_Cas02710: CRISPR- 44.2 3.4E+02 0.0074 27.1 12.3 55 152-207 140-198 (379)
393 KOG2908 26S proteasome regulat 44.2 3.1E+02 0.0068 26.7 13.1 85 217-302 79-175 (380)
394 COG0735 Fur Fe2+/Zn2+ uptake r 44.2 1.5E+02 0.0033 24.8 7.9 43 185-227 27-69 (145)
395 PF10366 Vps39_1: Vacuolar sor 44.1 1.6E+02 0.0034 23.3 7.7 26 252-277 42-67 (108)
396 PRK11639 zinc uptake transcrip 44.1 1.2E+02 0.0027 26.2 7.5 63 96-159 14-76 (169)
397 PF14689 SPOB_a: Sensor_kinase 43.8 59 0.0013 22.6 4.5 24 253-276 27-50 (62)
398 PF09670 Cas_Cas02710: CRISPR- 43.6 3.1E+02 0.0067 27.4 11.2 56 116-172 139-198 (379)
399 PRK08691 DNA polymerase III su 43.4 2.8E+02 0.006 30.2 11.2 37 98-136 190-226 (709)
400 KOG0890 Protein kinase of the 42.8 7.9E+02 0.017 30.9 21.3 150 113-273 1388-1542(2382)
401 COG5187 RPN7 26S proteasome re 42.3 3.1E+02 0.0067 26.1 12.7 68 249-316 115-187 (412)
402 KOG2582 COP9 signalosome, subu 42.2 3.5E+02 0.0075 26.6 14.3 128 105-241 72-211 (422)
403 PF14669 Asp_Glu_race_2: Putat 42.0 2.5E+02 0.0054 24.9 14.0 180 206-410 1-206 (233)
404 COG5108 RPO41 Mitochondrial DN 41.7 4.2E+02 0.0092 28.4 11.7 74 218-294 33-113 (1117)
405 PRK14956 DNA polymerase III su 41.2 4.3E+02 0.0092 27.4 12.0 33 179-211 249-281 (484)
406 PRK10564 maltose regulon perip 41.1 52 0.0011 31.3 4.9 41 141-181 254-295 (303)
407 KOG0292 Vesicle coat complex C 40.8 2.1E+02 0.0047 31.5 9.7 158 218-415 625-783 (1202)
408 PF14853 Fis1_TPR_C: Fis1 C-te 40.7 1E+02 0.0022 20.8 5.0 35 114-150 7-41 (53)
409 KOG2908 26S proteasome regulat 40.6 3.6E+02 0.0077 26.3 12.0 84 148-231 80-175 (380)
410 cd00280 TRFH Telomeric Repeat 40.0 2E+02 0.0043 25.3 7.8 48 229-277 85-139 (200)
411 PF10475 DUF2450: Protein of u 39.5 2.9E+02 0.0063 26.3 10.1 111 148-273 103-221 (291)
412 PF13934 ELYS: Nuclear pore co 38.8 3.1E+02 0.0067 25.1 10.5 30 370-399 157-186 (226)
413 PRK09462 fur ferric uptake reg 38.5 2E+02 0.0043 24.1 7.9 58 169-227 8-66 (148)
414 PF10475 DUF2450: Protein of u 38.5 3.6E+02 0.0078 25.7 11.6 118 254-408 103-220 (291)
415 KOG4507 Uncharacterized conser 38.0 2.1E+02 0.0045 30.1 8.8 55 221-277 650-704 (886)
416 PRK11639 zinc uptake transcrip 37.9 2E+02 0.0042 24.9 7.8 36 192-227 39-74 (169)
417 PF07575 Nucleopor_Nup85: Nup8 37.7 72 0.0016 33.9 6.1 62 177-240 404-465 (566)
418 KOG1498 26S proteasome regulat 37.6 4.3E+02 0.0093 26.3 14.6 104 219-322 137-251 (439)
419 KOG1585 Protein required for f 37.3 3.4E+02 0.0075 25.2 19.0 39 370-409 207-251 (308)
420 PF12926 MOZART2: Mitotic-spin 36.9 1.8E+02 0.004 21.9 7.9 42 129-170 29-70 (88)
421 COG5108 RPO41 Mitochondrial DN 36.5 2.5E+02 0.0055 29.9 9.2 74 113-189 33-114 (1117)
422 PRK14951 DNA polymerase III su 36.5 3.9E+02 0.0084 28.8 11.1 90 88-180 185-287 (618)
423 cd08819 CARD_MDA5_2 Caspase ac 36.1 1.9E+02 0.0041 21.9 7.5 64 198-268 22-85 (88)
424 PRK09857 putative transposase; 36.0 2.6E+02 0.0056 26.7 9.0 66 146-212 209-274 (292)
425 PF12862 Apc5: Anaphase-promot 35.9 1.6E+02 0.0036 22.3 6.4 21 256-276 48-68 (94)
426 PF09454 Vps23_core: Vps23 cor 35.5 54 0.0012 23.2 3.2 30 144-173 9-38 (65)
427 PF08311 Mad3_BUB1_I: Mad3/BUB 35.4 2.4E+02 0.0053 22.9 8.6 43 267-309 81-124 (126)
428 COG2909 MalT ATP-dependent tra 35.3 6.7E+02 0.015 27.9 26.8 287 125-419 298-652 (894)
429 PF11817 Foie-gras_1: Foie gra 35.1 1.8E+02 0.0039 26.9 7.7 53 149-201 184-241 (247)
430 PRK14970 DNA polymerase III su 34.7 4.6E+02 0.01 25.9 11.6 39 95-135 176-214 (367)
431 PRK07003 DNA polymerase III su 34.3 6.9E+02 0.015 27.8 14.7 73 99-174 191-276 (830)
432 PF08424 NRDE-2: NRDE-2, neces 34.1 4.5E+02 0.0096 25.5 16.8 97 106-204 17-128 (321)
433 PRK09462 fur ferric uptake reg 34.0 2E+02 0.0044 24.1 7.2 59 99-158 8-67 (148)
434 COG2178 Predicted RNA-binding 33.9 3.4E+02 0.0074 24.1 9.5 54 189-242 40-98 (204)
435 PF11817 Foie-gras_1: Foie gra 33.7 2E+02 0.0044 26.6 7.8 57 254-310 183-244 (247)
436 KOG4507 Uncharacterized conser 32.6 3E+02 0.0065 29.0 8.9 162 92-260 555-721 (886)
437 PLN03025 replication factor C 32.5 4.7E+02 0.01 25.3 14.6 39 93-133 165-203 (319)
438 PF13934 ELYS: Nuclear pore co 32.3 3.9E+02 0.0085 24.4 10.9 22 219-240 114-135 (226)
439 PF08424 NRDE-2: NRDE-2, neces 32.2 4.8E+02 0.01 25.3 18.3 116 197-315 50-185 (321)
440 KOG2659 LisH motif-containing 32.2 4E+02 0.0086 24.3 9.2 63 106-170 24-91 (228)
441 TIGR02508 type_III_yscG type I 31.7 2.5E+02 0.0055 22.0 8.6 12 225-236 51-62 (115)
442 KOG0890 Protein kinase of the 31.4 1.2E+03 0.025 29.6 26.0 122 108-237 1420-1542(2382)
443 PF02847 MA3: MA3 domain; Int 31.0 1.6E+02 0.0035 23.1 5.9 21 255-275 8-28 (113)
444 PF09454 Vps23_core: Vps23 cor 30.3 1.1E+02 0.0025 21.5 4.2 52 104-156 4-55 (65)
445 KOG4567 GTPase-activating prot 30.0 5.1E+02 0.011 24.9 9.6 87 198-294 263-359 (370)
446 smart00386 HAT HAT (Half-A-TPR 29.8 1.1E+02 0.0023 17.0 4.0 28 122-150 1-28 (33)
447 PRK06645 DNA polymerase III su 29.6 5.7E+02 0.012 26.7 10.9 37 176-213 256-292 (507)
448 COG2909 MalT ATP-dependent tra 29.6 8.3E+02 0.018 27.3 23.6 220 190-410 427-684 (894)
449 PF03745 DUF309: Domain of unk 29.5 1.7E+02 0.0038 20.3 5.0 14 156-169 12-25 (62)
450 PRK14963 DNA polymerase III su 29.5 5.8E+02 0.013 26.7 11.0 34 178-212 242-275 (504)
451 PF12862 Apc5: Anaphase-promot 29.4 2.5E+02 0.0055 21.2 6.9 53 260-312 9-69 (94)
452 PF09868 DUF2095: Uncharacteri 29.2 2.2E+02 0.0049 22.6 5.8 25 114-138 67-91 (128)
453 PF02184 HAT: HAT (Half-A-TPR) 28.9 81 0.0017 18.7 2.6 23 123-147 2-24 (32)
454 KOG0991 Replication factor C, 28.3 4.8E+02 0.01 24.1 12.5 49 281-331 236-284 (333)
455 cd07153 Fur_like Ferric uptake 28.2 1.5E+02 0.0032 23.4 5.3 36 192-227 14-49 (116)
456 PF07079 DUF1347: Protein of u 28.1 6.7E+02 0.014 25.7 29.0 300 109-414 47-409 (549)
457 PRK14958 DNA polymerase III su 28.0 7.2E+02 0.016 26.0 11.8 36 204-241 191-226 (509)
458 KOG1464 COP9 signalosome, subu 27.4 5.3E+02 0.011 24.3 16.4 192 138-330 21-237 (440)
459 smart00804 TAP_C C-terminal do 27.2 59 0.0013 22.8 2.3 24 226-249 38-61 (63)
460 KOG4567 GTPase-activating prot 26.6 3.4E+02 0.0073 26.1 7.6 57 233-295 263-319 (370)
461 PF00244 14-3-3: 14-3-3 protei 26.5 1.5E+02 0.0033 27.2 5.6 22 395-416 179-200 (236)
462 PF12926 MOZART2: Mitotic-spin 25.7 3E+02 0.0064 20.8 7.9 43 164-206 29-71 (88)
463 TIGR02270 conserved hypothetic 25.6 7.1E+02 0.015 25.2 26.0 205 115-345 45-249 (410)
464 PF11768 DUF3312: Protein of u 25.3 6.7E+02 0.014 26.3 10.1 25 111-135 411-435 (545)
465 PF12069 DUF3549: Protein of u 25.2 6.6E+02 0.014 24.6 18.2 87 254-347 171-259 (340)
466 PF06485 DUF1092: Protein of u 25.1 2.3E+02 0.005 26.6 6.3 60 445-521 43-103 (270)
467 PRK04946 hypothetical protein; 24.6 4.2E+02 0.0091 23.2 7.5 63 428-501 96-160 (181)
468 KOG2063 Vacuolar assembly/sort 24.5 1E+03 0.023 26.7 19.3 27 110-136 506-532 (877)
469 PRK07764 DNA polymerase III su 24.0 8.7E+02 0.019 27.3 11.5 108 88-219 181-288 (824)
470 PF15297 CKAP2_C: Cytoskeleton 23.8 7E+02 0.015 24.5 9.7 77 251-329 105-185 (353)
471 cd07153 Fur_like Ferric uptake 23.4 2.2E+02 0.0048 22.4 5.4 44 150-193 7-50 (116)
472 smart00638 LPD_N Lipoprotein N 23.3 9.1E+02 0.02 25.6 26.7 157 141-304 308-480 (574)
473 PF01475 FUR: Ferric uptake re 23.2 1.5E+02 0.0033 23.6 4.5 41 185-225 14-54 (120)
474 PF09868 DUF2095: Uncharacteri 22.6 3.2E+02 0.0069 21.8 5.6 25 220-244 68-92 (128)
475 KOG0687 26S proteasome regulat 22.6 7.2E+02 0.016 24.2 15.5 67 250-316 105-176 (393)
476 PRK09857 putative transposase; 22.5 6.8E+02 0.015 23.9 10.9 65 253-318 210-274 (292)
477 COG2976 Uncharacterized protei 22.5 5.6E+02 0.012 22.9 15.3 127 145-279 56-189 (207)
478 PRK06305 DNA polymerase III su 22.3 8.6E+02 0.019 25.0 11.7 28 183-211 253-280 (451)
479 PF02631 RecX: RecX family; I 22.1 4.1E+02 0.0089 21.2 10.1 17 384-400 91-107 (121)
480 KOG0840 ATP-dependent Clp prot 21.9 4.2E+02 0.0091 24.6 7.1 53 93-147 88-157 (275)
481 PF12796 Ank_2: Ankyrin repeat 21.8 1.4E+02 0.0031 21.9 3.8 13 165-177 41-53 (89)
482 COG5210 GTPase-activating prot 21.5 9E+02 0.019 25.2 10.8 153 159-319 319-481 (496)
483 smart00544 MA3 Domain in DAP-5 21.5 4E+02 0.0087 20.8 10.3 61 112-174 6-68 (113)
484 PF02847 MA3: MA3 domain; Int 21.2 4E+02 0.0087 20.7 10.0 61 287-349 5-68 (113)
485 PF04762 IKI3: IKI3 family; I 21.1 1.3E+03 0.028 26.5 14.8 30 213-242 812-843 (928)
486 PRK14971 DNA polymerase III su 21.0 1.1E+03 0.023 25.5 11.4 35 99-135 193-227 (614)
487 PRK14962 DNA polymerase III su 20.9 9.4E+02 0.02 24.9 16.8 106 97-227 187-292 (472)
488 PF01347 Vitellogenin_N: Lipop 20.7 1.1E+03 0.023 25.4 17.9 258 91-351 322-607 (618)
489 TIGR02397 dnaX_nterm DNA polym 20.3 8E+02 0.017 23.8 12.9 28 183-211 249-276 (355)
490 PF01475 FUR: Ferric uptake re 20.2 2.2E+02 0.0047 22.7 4.8 45 148-192 12-56 (120)
491 COG4259 Uncharacterized protei 20.1 4.3E+02 0.0093 20.6 6.3 36 324-359 77-113 (121)
492 PRK11619 lytic murein transgly 20.0 1.1E+03 0.025 25.5 26.6 77 113-195 104-180 (644)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-60 Score=514.06 Aligned_cols=427 Identities=18% Similarity=0.278 Sum_probs=349.5
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+.+++..|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE--KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 248 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 248 (533)
+.|+.||..+|+.||.+|++.|++++|.++|++|.+ .|+.||..+|++||.+|++.|++++|.++|++|.+.|. .|+
T Consensus 535 ~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi-~p~ 613 (1060)
T PLN03218 535 SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI-KGT 613 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCC
Confidence 999999999999999999999999999999999876 57888888898888888888888888888888888885 888
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009506 249 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 328 (533)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 328 (533)
..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~a 693 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhcCCh-HHHHHHHHHHHhcCCChhHHH-HHHHHhhhhhccHHHHHHHHHhhhcc---CccchhhHHHHHHHHhcCCHHH
Q 009506 329 MTQTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLEN 403 (533)
Q Consensus 329 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 403 (533)
|++.|+ ++|.++|+.|...+...+... +.++.+|++.|+. ++|.++|++|.. .||..+|++||.+|++.|++++
T Consensus 694 y~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~-eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQL-PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 888888 888888887776554444443 7777777777765 777777776643 3566666666666666665555
Q ss_pred HHHHHHHHHhc---------------------------------------------------------------------
Q 009506 404 ACKLLELGLTL--------------------------------------------------------------------- 414 (533)
Q Consensus 404 A~~l~~~m~~~--------------------------------------------------------------------- 414 (533)
|.++|++|.+.
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~ 852 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ 852 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 44444444333
Q ss_pred ---------------------------------------------------------cccCCccccCccceeecccccCh
Q 009506 415 ---------------------------------------------------------EVYTDIQSRSPTQWSLHLKSLSL 437 (533)
Q Consensus 415 ---------------------------------------------------------g~~~~~~~~~~~~~~~~l~~~~~ 437 (533)
|+.|+....+. .|.++++.++.
T Consensus 853 vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~~~~~-~~~~d~~~~~~ 931 (1060)
T PLN03218 853 VLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVSFKKS-PIVIDAEELPV 931 (1060)
T ss_pred HHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcccccC-ceEEEcccCcc
Confidence 33333322222 69999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeeccccccchh---------HHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 009506 438 GAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKG---------LASVFESHLKELNAPFHDSPDKVGWFLT 508 (533)
Q Consensus 438 g~~~~a~~~~~~~l~~~~~~g~~~p~~~~i~~~~~~~~~~~~~---------l~~~~~~~L~~~~~~f~~~~~~~g~~~~ 508 (533)
|++.+++..|++.+..++..|.++|....++-.-+++.+..+| +++++..+|++++.||+.++++ ||+..
T Consensus 932 ~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-g~~~~ 1010 (1060)
T PLN03218 932 FAAEVYLLTILKGLKHRLAAGAKLPNVTILLPTEKKEIYTPKGEKTINLAGRVGQAVAALLRRLGLPYQGSESH-GKLRI 1010 (1060)
T ss_pred hhHHHHHHHHHHHHHHHHhccCcCCcceeeeccccceeeccCCchhHHHHHHHHHHHHHHHHHhCCCCCCCCCC-CeEEe
Confidence 9999999999999999999999999988733335555555445 8999999999999999999988 99999
Q ss_pred eHHHHHHHhhcCC
Q 009506 509 TEAAAKSWLESRS 521 (533)
Q Consensus 509 ~~~~l~~wl~~~~ 521 (533)
++.++++||+.+.
T Consensus 1011 ~~~~~~~wl~~~~ 1023 (1060)
T PLN03218 1011 NGLSLRRWFQPKL 1023 (1060)
T ss_pred ccHHHHHHhcccC
Confidence 9999999999875
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.2e-51 Score=444.63 Aligned_cols=335 Identities=21% Similarity=0.357 Sum_probs=319.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHhcC
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS--SENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~p~~~~~~~li~~~~~~g 263 (533)
.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|. .||.++|++||.+|++.|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi-~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI-DPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999986 454 999999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHH
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 342 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~ 342 (533)
++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+ ++|.++++
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHhcCCChhHHH-HHHHHhhhhhccHHHHHHHHHhhhcc---CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccC
Q 009506 343 CVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISK---DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 418 (533)
Q Consensus 343 ~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 418 (533)
.|.+.+...+... +.|+.+|+++|++ ++|.++|+.|.. .|+..+||+||.+|++.|++++|+++|++|...|+.|
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~-eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNW-KKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 9999987777666 9999999999987 999999999863 6799999999999999999999999999999999999
Q ss_pred CccccCccceeecccccCh-hhHHHHHHHH
Q 009506 419 DIQSRSPTQWSLHLKSLSL-GAALTALHIW 447 (533)
Q Consensus 419 ~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~ 447 (533)
|..+ |+.++.++.. |....|...+
T Consensus 753 d~~T-----y~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 753 NTIT-----YSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred CHHH-----HHHHHHHHHHCCCHHHHHHHH
Confidence 9877 5667777776 7777777665
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4e-50 Score=431.49 Aligned_cols=342 Identities=14% Similarity=0.205 Sum_probs=271.7
Q ss_pred hHHhhHHHHHhhcC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009506 90 LKEKSYDTRARNEK-WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 168 (533)
Q Consensus 90 ~~~~~l~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~ 168 (533)
..+..++..|...+ +.||..+|+.++.+|++.++++.|.+++..|.+.|+.||..+||.||.+|++.|++++|.++|++
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 183 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 35677777777654 67888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 009506 169 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 248 (533)
Q Consensus 169 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 248 (533)
|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|..+.+.+++..+.+.|. .||
T Consensus 184 m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~-~~d 258 (697)
T PLN03081 184 MP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV-VGD 258 (697)
T ss_pred CC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC-Ccc
Confidence 85 3788888888888888888888888888888888888888888888888888888888888888888775 788
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009506 249 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 328 (533)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 328 (533)
..+|++||++|++.|++++|.++|++|.+ +|.++||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888888888888754 67888888888888888888888888888888888888888888888
Q ss_pred HhcCCh-HHHHHHHHHHHhcCCChhHHH-HHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHH
Q 009506 329 MTQTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACK 406 (533)
Q Consensus 329 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 406 (533)
|++.|. +++.++++.|.+.+...+..+ +.|+.+|+++|++ ++|.++|++|.. +|..+||+||.+|+++|+.++|++
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~-~~A~~vf~~m~~-~d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRM-EDARNVFDRMPR-KNLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCH-HHHHHHHHhCCC-CCeeeHHHHHHHHHHcCCHHHHHH
Confidence 888888 888888888888776665554 7888888888876 888888888765 577788888888888888888888
Q ss_pred HHHHHHhccccCCccccCccceeecccccCh-hhHHHHHHHH
Q 009506 407 LLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIW 447 (533)
Q Consensus 407 l~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~ 447 (533)
+|++|.+.|+.||..| |+.++.+++. |...++...+
T Consensus 413 lf~~M~~~g~~Pd~~T-----~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 413 MFERMIAEGVAPNHVT-----FLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred HHHHHHHhCCCCCHHH-----HHHHHHHHhcCCcHHHHHHHH
Confidence 8888888888887666 4445555555 5555554444
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-50 Score=442.39 Aligned_cols=393 Identities=16% Similarity=0.198 Sum_probs=317.6
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.++++|..+.+.|+.||+.+||+||.+|+++|++++|.++|++|.+ ||.++||+||.+|++.|++++|+++|++|.
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4567777777777777888888999999999999999999999964 788999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+.|+.||..||+.+|.+|++.|+++.|.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|. .||.+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~d~~ 355 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-----TKDAV 355 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-----CCCee
Confidence 9999999999999999999999999999999999999999999999999999999999999988888886 57788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 330 (533)
+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++++.|.+.|+.|+..+++.|+.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888777777777777777777777777777777777777
Q ss_pred cCCh-HHHHHHHHHHHhc--------------------------------------------------------------
Q 009506 331 QTPK-EELGKLVECVEKS-------------------------------------------------------------- 347 (533)
Q Consensus 331 ~~~~-~~a~~~~~~~~~~-------------------------------------------------------------- 347 (533)
+.|+ ++|.++|+.|.+.
T Consensus 436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 7777 7777666654332
Q ss_pred ---CCChhHHH-HHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCcccc
Q 009506 348 ---NSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 423 (533)
Q Consensus 348 ---~~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 423 (533)
+...+..+ +.|+++|.++|++ ++|+++|+.+ .+|..+||+||.+|+++|+.++|+++|++|.+.|+.||..|
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~-~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T- 591 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRM-NYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT- 591 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCH-HHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-
Confidence 22222222 5677899999987 9999999998 67999999999999999999999999999999999999877
Q ss_pred CccceeecccccCh-hhHHHHHHHHHHHH-------------------------HHHHHcCCCC---CC---ceEEEeee
Q 009506 424 SPTQWSLHLKSLSL-GAALTALHIWINDL-------------------------SKALESGEEF---PP---LLGINTGH 471 (533)
Q Consensus 424 ~~~~~~~~l~~~~~-g~~~~a~~~~~~~l-------------------------~~~~~~g~~~---p~---~~~i~~~~ 471 (533)
|+.++.+++. |...++...+..+. +++.+..+.+ |+ |.+++.+|
T Consensus 592 ----~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 592 ----FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667 (857)
T ss_pred ----HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 4556666666 66666665554332 2232222233 33 44566678
Q ss_pred ccccccchhHHHHHHHHhhhcCCCCCCCCCCcceEEE
Q 009506 472 GKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLT 508 (533)
Q Consensus 472 ~~~~~~~~~l~~~~~~~L~~~~~~f~~~~~~~g~~~~ 508 (533)
..|+.. ++++.+.+.|.+++ |++.|+++.
T Consensus 668 ~~~~~~--e~~e~~a~~l~~l~------p~~~~~y~l 696 (857)
T PLN03077 668 RIHRHV--ELGELAAQHIFELD------PNSVGYYIL 696 (857)
T ss_pred HHcCCh--HHHHHHHHHHHhhC------CCCcchHHH
Confidence 888865 78888888888887 888888874
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.6e-48 Score=417.45 Aligned_cols=367 Identities=16% Similarity=0.220 Sum_probs=268.1
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.++++|..|.+.|+.||..+||.||++|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|+++|++|.
T Consensus 141 ~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999964 888999999999999999999999999987
Q ss_pred HCCCCCCHH-----------------------------------HHHHHHHHHHhcCChHH-------------------
Q 009506 171 DNGLSPNWN-----------------------------------TYASLLRAYGRARYGED------------------- 196 (533)
Q Consensus 171 ~~g~~p~~~-----------------------------------~~~~ll~~~~~~g~~~~------------------- 196 (533)
+.|+.||.. +||+||++|+++|++++
T Consensus 217 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~l 296 (697)
T PLN03081 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSM 296 (697)
T ss_pred HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHH
Confidence 766655433 23444445555555544
Q ss_pred ------------HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 197 ------------TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 197 ------------a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++++.|.+.|. .||..+|++||++|+++|+
T Consensus 297 i~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~-~~d~~~~~~Li~~y~k~G~ 375 (697)
T PLN03081 297 LAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF-PLDIVANTALVDLYSKWGR 375 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCC-CCCeeehHHHHHHHHHCCC
Confidence 444555555555555555555555555555555555555555555553 5555555555556666666
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 343 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~ 343 (533)
+++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|. +++.++|+.
T Consensus 376 ~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~ 451 (697)
T PLN03081 376 MEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQS 451 (697)
T ss_pred HHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 6666666665543 67778888888888888888888888888888999999999999999999998 889999998
Q ss_pred HHh-cCCChhH-HHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCcc
Q 009506 344 VEK-SNSKLGY-VVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ 421 (533)
Q Consensus 344 ~~~-~~~~~~~-~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~ 421 (533)
|.+ .+...+. ..+.+++.|.+.|.+ ++|.++|+++...|+..+|++|+.+|..+|+++.|..+++++.+. .|+
T Consensus 452 m~~~~g~~p~~~~y~~li~~l~r~G~~-~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~-- 526 (697)
T PLN03081 452 MSENHRIKPRAMHYACMIELLGREGLL-DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPE-- 526 (697)
T ss_pred HHHhcCCCCCccchHhHHHHHHhcCCH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCC--
Confidence 875 3444433 337788888888876 899999999888888889999999999999999999998888543 343
Q ss_pred ccCccceeecccccCh-hhHHHHHHHHHHHHHHHHHcC-CCCCCceEEEeeecccccc
Q 009506 422 SRSPTQWSLHLKSLSL-GAALTALHIWINDLSKALESG-EEFPPLLGINTGHGKHKYS 477 (533)
Q Consensus 422 ~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~l~~~~~~g-~~~p~~~~i~~~~~~~~~~ 477 (533)
+...|..++..++. |...+|...+ +++.+.| ...|.+.+|..+-..|.++
T Consensus 527 --~~~~y~~L~~~y~~~G~~~~A~~v~----~~m~~~g~~k~~g~s~i~~~~~~~~f~ 578 (697)
T PLN03081 527 --KLNNYVVLLNLYNSSGRQAEAAKVV----ETLKRKGLSMHPACTWIEVKKQDHSFF 578 (697)
T ss_pred --CCcchHHHHHHHHhCCCHHHHHHHH----HHHHHcCCccCCCeeEEEECCeEEEEc
Confidence 23356778888877 8888888776 3444555 4556665555544445443
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.7e-47 Score=417.21 Aligned_cols=370 Identities=16% Similarity=0.173 Sum_probs=303.8
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+..++.+|...|+.||..+|+++|++|++.++++.+.+++..|.+.|+.||..+||+||.+|++.|++++|.++|++|.
T Consensus 170 ~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~ 249 (857)
T PLN03077 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP 249 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC
Confidence 45566666666666666666666666666666666666666666666666666677777777788888888888888875
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
.||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|. .||..
T Consensus 250 ----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~-~~d~~ 324 (857)
T PLN03077 250 ----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGF-AVDVS 324 (857)
T ss_pred ----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-ccchH
Confidence 3677888888888888888888888888888888888888999999888888888888888888888886 88999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 330 (533)
+|++||.+|++.|++++|.++|++|.+ ||..+|+.||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHh
Confidence 999999999999999999999999864 7889999999999999999999999999999999999999999999999
Q ss_pred cCCh-HHHHHHHHHHHhcCCChhHHH-HHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHH
Q 009506 331 QTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLL 408 (533)
Q Consensus 331 ~~~~-~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 408 (533)
+.|+ +++.++++.+.+.+...+..+ +.|+.+|.++|++ ++|.++|++|.. +|..+||++|.+|++.|+.++|+++|
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~-~~A~~vf~~m~~-~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI-DKALEVFHNIPE-KDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred ccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH-HHHHHHHHhCCC-CCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 9999 999999999999988877766 9999999999987 999999999986 58899999999999999999999999
Q ss_pred HHHHhccccCCcccc------------------------------------------------------------Cccce
Q 009506 409 ELGLTLEVYTDIQSR------------------------------------------------------------SPTQW 428 (533)
Q Consensus 409 ~~m~~~g~~~~~~~~------------------------------------------------------------~~~~~ 428 (533)
++|.. ++.||..++ +..+|
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~ 557 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW 557 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhH
Confidence 99975 577776543 44568
Q ss_pred eecccccCh-hhHHHHHHHHHHHHHHHHHcCCCCCCce---EEEeeecccccc
Q 009506 429 SLHLKSLSL-GAALTALHIWINDLSKALESGEEFPPLL---GINTGHGKHKYS 477 (533)
Q Consensus 429 ~~~l~~~~~-g~~~~a~~~~~~~l~~~~~~g~~~p~~~---~i~~~~~~~~~~ 477 (533)
+.++.++.. |...+|+..+. ++.+.| ..|+.+ .++.+|.+.+.+
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~----~M~~~g-~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFN----RMVESG-VNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHH----HHHHcC-CCCCcccHHHHHHHHhhcChH
Confidence 888888887 88888888773 333334 456543 344566665544
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=3.2e-19 Score=179.82 Aligned_cols=301 Identities=11% Similarity=0.045 Sum_probs=249.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRA 191 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~ 191 (533)
...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 345678899999999999999863 23566899999999999999999999999987542222 35688899999999
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChHH
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSE 267 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 267 (533)
|++++|..+|+++.+... .+..+++.++..+.+.|++++|.+.++.+.+.+. .++ ...|..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 999999999999988633 3678999999999999999999999999987653 222 2345678888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 009506 268 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 346 (533)
Q Consensus 268 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~ 346 (533)
|.++|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+......++..+..+|...|+ ++|...++.+.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998753 334668888999999999999999999999876433334578889999999999 999999999998
Q ss_pred cCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc-cCccchhhHHHHHHHHh---cCCHHHHHHHHHHHHhccccCCcc
Q 009506 347 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYCNCLIDLCVN---LNLLENACKLLELGLTLEVYTDIQ 421 (533)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~-~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~~~~~ 421 (533)
..|+.... ..++..+.+.|+. ++|..+|+++. ..|+...++.++..+.. .|+.++|+.++++|.+.++.|+..
T Consensus 278 ~~p~~~~~-~~la~~~~~~g~~-~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 278 EYPGADLL-LALAQLLEEQEGP-EAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hCCCchHH-HHHHHHHHHhCCH-HHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 88876544 7788889999987 99999998754 45788888888888775 568999999999999988877643
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.85 E-value=1.1e-17 Score=186.96 Aligned_cols=312 Identities=13% Similarity=0.057 Sum_probs=187.7
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+..++..+.+.. ..+..++..+...|.+.|++++|..+|+++...+ +.+...+..+...+.+.|++++|..+++.+.
T Consensus 517 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 517 DAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555565555443 3356667777777777777777777777766543 2345566666667777777777777777766
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+.. +.+..+|..+..+|.+.|++++|...|+++.+.... +...+..+...|.+.|++++|.++|+++.+.. +.+..
T Consensus 595 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 670 (899)
T TIGR02917 595 DAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELK--PDNTE 670 (899)
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHH
Confidence 542 445666677777777777777777777766655322 45566666666666777777777776666543 34566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 330 (533)
++..++..+...|++++|.++++.+.+.+ +.+...+..+...+.+.|++++|...|+++.+.+ |+..++..+..++.
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 747 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALL 747 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHH
Confidence 66666666666666666666666665543 3345555566666666666666666666665543 33344555555666
Q ss_pred cCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHH
Q 009506 331 QTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKL 407 (533)
Q Consensus 331 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l 407 (533)
+.|+ ++|.+.++.+.+..|+.......++..+...|+. ++|...|+++.. +.+..+++.+...+.+.|+ ++|+.+
T Consensus 748 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~ 825 (899)
T TIGR02917 748 ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDY-DKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEY 825 (899)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHH
Confidence 6666 6666666665555555554445555555555554 556666655432 2233455555555555555 455555
Q ss_pred HHHHHh
Q 009506 408 LELGLT 413 (533)
Q Consensus 408 ~~~m~~ 413 (533)
++++..
T Consensus 826 ~~~~~~ 831 (899)
T TIGR02917 826 AEKALK 831 (899)
T ss_pred HHHHHh
Confidence 555543
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.83 E-value=5.3e-17 Score=181.42 Aligned_cols=316 Identities=13% Similarity=0.034 Sum_probs=270.0
Q ss_pred hHHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009506 90 LKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 169 (533)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m 169 (533)
..+...+.++.+.. ..+...+..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|+.++|..+|+++
T Consensus 482 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 482 AKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred HHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677777776543 3456778889999999999999999999998754 347888999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH
Q 009506 170 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS 249 (533)
Q Consensus 170 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~ 249 (533)
.+.+ +.+...+..+...|.+.|++++|..+++.+.+... .+..+|..+...|.+.|++++|.+.|+.+.+.. +.+.
T Consensus 560 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 635 (899)
T TIGR02917 560 AELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSA 635 (899)
T ss_pred HHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCh
Confidence 8765 45677888999999999999999999999987643 478899999999999999999999999998764 4577
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009506 250 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 329 (533)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 329 (533)
..+..+...|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|..+++.+.+.+ ..+...+..+...+
T Consensus 636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 636 LALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLY 713 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHH
Confidence 889999999999999999999999988753 3458899999999999999999999999998875 34666788888999
Q ss_pred hcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHH
Q 009506 330 TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACK 406 (533)
Q Consensus 330 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 406 (533)
...|+ ++|.+.++.+....|+. .....++..+...|+. ++|.+.++++.. +.+...+..+...|.+.|+.++|..
T Consensus 714 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~-~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNT-AEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999 99999999999888877 3446677888888987 899998888653 3456688999999999999999999
Q ss_pred HHHHHHhcc
Q 009506 407 LLELGLTLE 415 (533)
Q Consensus 407 l~~~m~~~g 415 (533)
.|+++.+..
T Consensus 792 ~~~~~~~~~ 800 (899)
T TIGR02917 792 HYRTVVKKA 800 (899)
T ss_pred HHHHHHHhC
Confidence 999998764
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=1.6e-16 Score=160.22 Aligned_cols=283 Identities=15% Similarity=0.145 Sum_probs=227.9
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN---MITYNNLLDTMGRAKRPWQVKTIYK 167 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~~~~~li~~~~~~g~~~~a~~~~~ 167 (533)
.+...+.++.+.. ..+..++..+...|.+.|++++|..+++.+...+..++ ...+..+...|.+.|++++|..+|+
T Consensus 53 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 131 (389)
T PRK11788 53 KAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFL 131 (389)
T ss_pred HHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4667777777653 34567899999999999999999999999987532222 3568889999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009506 168 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 243 (533)
Q Consensus 168 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 243 (533)
++.+.. +.+..+++.++..|.+.|++++|.++++.+.+.+..+. ...|..+...+.+.|++++|.+.|+++.+..
T Consensus 132 ~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 210 (389)
T PRK11788 132 QLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD 210 (389)
T ss_pred HHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC
Confidence 999753 45778999999999999999999999999998764432 2245677788899999999999999998754
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHH
Q 009506 244 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 323 (533)
Q Consensus 244 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 323 (533)
+.+...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++++.+. .|+...+.
T Consensus 211 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~ 286 (389)
T PRK11788 211 --PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLL 286 (389)
T ss_pred --cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHH
Confidence 44577888899999999999999999999987542222467889999999999999999999999876 46767778
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhh--hccHHHHHHHHHhhhc
Q 009506 324 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI--EGDFKKEATELFNSIS 380 (533)
Q Consensus 324 ~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~a~~~~~~~~ 380 (533)
.+...+.+.|+ ++|.++++.+.+..|+...+...+...... .|+. +++..+|+++.
T Consensus 287 ~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~-~~a~~~~~~~~ 345 (389)
T PRK11788 287 ALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRA-KESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccc-hhHHHHHHHHH
Confidence 89999999999 999999999998888876554344332211 3444 77888777664
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=6e-15 Score=137.97 Aligned_cols=308 Identities=18% Similarity=0.207 Sum_probs=226.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 009506 104 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 183 (533)
Q Consensus 104 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 183 (533)
...+..+|..||.+++|.-..+.|.++|++-.+...+.+..+||.+|.+-.-.. ..+++.+|....+.||..|+|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHH
Confidence 345789999999999999999999999999998878899999999998764332 3889999999999999999999
Q ss_pred HHHHHHhcCChHHH----HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCC--C-CCCHHH
Q 009506 184 LLRAYGRARYGEDT----LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE-AFEIFEDMKS----SEN--C-QPDSWT 251 (533)
Q Consensus 184 ll~~~~~~g~~~~a----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~--~-~p~~~~ 251 (533)
++.+..+.|+++.| .+++.+|++.|++|...+|..+|..+++.++..+ |..++.++.. +.. + +.|...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 99999999988764 7889999999999999999999999999887644 4445544432 211 1 226788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEA----GFEPN---LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 324 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 324 (533)
|...|..|.+..+.+.|.++..-+... -+.|+ .+-|..+..+.|+....+.....|+.|+-.-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 899999999999999999987766431 12233 23466777788888888888888888888777788888888
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHhcCCChhHHH--HHHHHhhhhh--------ccH----HHHHHHHHhhhc--------c
Q 009506 325 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVV--KLLLEEQDIE--------GDF----KKEATELFNSIS--------K 381 (533)
Q Consensus 325 ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~--~~l~~~~~~~--------g~~----~~~a~~~~~~~~--------~ 381 (533)
++++....+. +-.-+++..+...+......+ .++....... .++ .+-|..+++..+ .
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 8888888877 777777776666554443333 1111111100 000 011222222221 1
Q ss_pred CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 382 DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
+......++.+-.+.+.|..++|-++|....+.+
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 2233466777778888888888888888886554
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=6e-14 Score=149.18 Aligned_cols=314 Identities=12% Similarity=0.035 Sum_probs=249.2
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+..+........... ...+..++..+...|++++|+..|+++.+.. +-+...|..+...+...|++++|+..|++..
T Consensus 60 ~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al 137 (656)
T PRK15174 60 VGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAW 137 (656)
T ss_pred hhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555554444 3344445566677999999999999998752 2356678888899999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+.. +.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...++.+..... .++..
T Consensus 138 ~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~-~~~~~ 213 (656)
T PRK15174 138 LAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFA-LERQE 213 (656)
T ss_pred HhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC-Ccchh
Confidence 753 3457788899999999999999999999887765443 3334333 347889999999999999877542 34455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH----HHHHHHHhhhCCCCCC-HHHHHHH
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD----VVRALNRLPELGITPD-DRFCGCL 325 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~-~~~~~~l 325 (533)
.+..+...+.+.|++++|...|++..+.. +.+...+..+...|...|++++ |...|++..+.. |+ ...+..+
T Consensus 214 ~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~--P~~~~a~~~l 290 (656)
T PRK15174 214 SAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN--SDNVRIVTLY 290 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC--CCCHHHHHHH
Confidence 56666788999999999999999988754 3457788889999999999986 899999988753 44 5588889
Q ss_pred HHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Cccch-hhHHHHHHHHhcCCHH
Q 009506 326 LNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVKKA-YCNCLIDLCVNLNLLE 402 (533)
Q Consensus 326 l~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~ 402 (533)
...+...|+ ++|...++.+....|+.......++..+...|+. ++|...|+++.. .|+.. .+..+..++...|+.+
T Consensus 291 g~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~-~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~d 369 (656)
T PRK15174 291 ADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQY-TAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTS 369 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHH
Confidence 999999999 9999999999999999888888899999999987 999999988763 44443 3444677899999999
Q ss_pred HHHHHHHHHHhc
Q 009506 403 NACKLLELGLTL 414 (533)
Q Consensus 403 ~A~~l~~~m~~~ 414 (533)
+|...|++..+.
T Consensus 370 eA~~~l~~al~~ 381 (656)
T PRK15174 370 EAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHh
Confidence 999999987654
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.71 E-value=6.8e-14 Score=148.75 Aligned_cols=296 Identities=7% Similarity=-0.070 Sum_probs=240.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 191 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 191 (533)
-.++..+.+.|++++|+.+++........ +...+..++.+....|++++|+..|+++.+.. +.+...+..+...+.+.
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 34677788999999999999999876433 44556666677788999999999999999864 44567888899999999
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 271 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (533)
|++++|...|++..+.... +...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|..+
T Consensus 124 g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~-~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATC-LSFLNKSRLPEDHDL 199 (656)
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHH-HHHHHcCCHHHHHHH
Confidence 9999999999999886433 67788899999999999999999999887654 2333444343 348889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HH----HHHHHHHHHh
Q 009506 272 FNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EE----LGKLVECVEK 346 (533)
Q Consensus 272 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~----a~~~~~~~~~ 346 (533)
++.+.+..-.++...+..+..++.+.|++++|...|++..+.. ..+...+..+...+...|+ ++ |...++.+..
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 9998775433445555666788999999999999999998764 2245577778888999998 54 8899999999
Q ss_pred cCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 347 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
..|+.......++..+...|+. ++|...+++... .| +...+..+..+|.+.|++++|+..++++....
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~-~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQN-EKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999888888999999999987 999999988653 33 44577889999999999999999999987653
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.65 E-value=1.5e-12 Score=138.63 Aligned_cols=299 Identities=15% Similarity=0.068 Sum_probs=236.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 189 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 189 (533)
.+......|.+.|++++|+..|++... +.|+...|..+..+|.+.|++++|++.++..++.. +.+...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 456677888999999999999999887 46888889999999999999999999999998764 345678888999999
Q ss_pred hcCChHHHHHHHHHHHHcCC----------------------------Cc----CHHHHHHH------------------
Q 009506 190 RARYGEDTLSVYREMKEKGM----------------------------QL----SVTLYNTL------------------ 219 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~----------------------------~~----~~~~~~~l------------------ 219 (533)
..|++++|+.-|......+. .| ........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 99999999776544322110 00 00000000
Q ss_pred ---------HHHH------HhcCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 009506 220 ---------LAMC------ADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN 283 (533)
Q Consensus 220 ---------i~~~------~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 283 (533)
+..+ ...+++++|.+.|+.....+...| +...|+.+...+...|++++|...|++..+. .|+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~ 363 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPR 363 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC
Confidence 0000 123578899999999887652233 4667888889999999999999999998875 355
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHh
Q 009506 284 -LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE 361 (533)
Q Consensus 284 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (533)
...|..+...+...|++++|...|++..+.. .-+..++..+...+...|+ ++|...++...+.+|+.......++..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 6688888999999999999999999998763 2245688888889999999 999999999999999988877888889
Q ss_pred hhhhccHHHHHHHHHhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 362 QDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 362 ~~~~g~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
+.+.|+. ++|+..|++... .| +...|+.+...+...|++++|++.|++..+..
T Consensus 443 ~~~~g~~-~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 443 QYKEGSI-ASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHCCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 9999987 999999988643 33 45688999999999999999999999987654
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.65 E-value=2e-12 Score=137.72 Aligned_cols=339 Identities=12% Similarity=0.020 Sum_probs=247.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-C-------
Q 009506 103 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-L------- 174 (533)
Q Consensus 103 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~------- 174 (533)
.+.|++..|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|...|++++|+.-|......+ .
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~ 233 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQ 233 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 356788899999999999999999999999998753 2356788889999999999999987665443211 0
Q ss_pred --------------------CC----CHHHHHHH---------------------------HHHH------HhcCChHHH
Q 009506 175 --------------------SP----NWNTYASL---------------------------LRAY------GRARYGEDT 197 (533)
Q Consensus 175 --------------------~p----~~~~~~~l---------------------------l~~~------~~~g~~~~a 197 (533)
.| ........ +..+ ...+++++|
T Consensus 234 ~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A 313 (615)
T TIGR00990 234 AVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEA 313 (615)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHH
Confidence 00 00000000 0000 112578899
Q ss_pred HHHHHHHHHcC-CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009506 198 LSVYREMKEKG-MQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 275 (533)
Q Consensus 198 ~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (533)
.+.|++..+.+ ..| ....|+.+...+...|++++|+..|++..+.. +.+...|..+...+...|++++|...|++.
T Consensus 314 ~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 314 ARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRVTQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999988765 223 45678888888889999999999999988753 345678888899999999999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhH
Q 009506 276 LEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGY 353 (533)
Q Consensus 276 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~ 353 (533)
.+.. +.+...|..+...|...|++++|...|++..+.. |+ ...+..+..++.+.|+ ++|...++...+..|+...
T Consensus 392 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~ 468 (615)
T TIGR00990 392 LKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPD 468 (615)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH
Confidence 7753 3357788888999999999999999999988753 44 4566777888888888 9999999999888888888
Q ss_pred HHHHHHHhhhhhccHHHHHHHHHhhhcc-Ccc--ch------hhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCccccC
Q 009506 354 VVKLLLEEQDIEGDFKKEATELFNSISK-DVK--KA------YCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRS 424 (533)
Q Consensus 354 ~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~~--~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~ 424 (533)
....++..+...|++ ++|...|++... .++ .. .++..+..+...|++++|..++++..... |+.
T Consensus 469 ~~~~lg~~~~~~g~~-~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~--p~~---- 541 (615)
T TIGR00990 469 VYNYYGELLLDQNKF-DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID--PEC---- 541 (615)
T ss_pred HHHHHHHHHHHccCH-HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCc----
Confidence 888888888888987 899998887532 221 11 22223334445699999999999887654 332
Q ss_pred ccceeecccccCh-hhHHHHHHHHHHHHHHH
Q 009506 425 PTQWSLHLKSLSL-GAALTALHIWINDLSKA 454 (533)
Q Consensus 425 ~~~~~~~l~~~~~-g~~~~a~~~~~~~l~~~ 454 (533)
...|..+...+.. |...+|+..+.+.++-.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 2234444555544 88888887776655543
No 16
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.63 E-value=2.7e-12 Score=145.78 Aligned_cols=317 Identities=13% Similarity=0.067 Sum_probs=218.6
Q ss_pred HhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHH------------HHHHHhcCC
Q 009506 92 EKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-PNMITYNNL------------LDTMGRAKR 158 (533)
Q Consensus 92 ~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~~~~~l------------i~~~~~~g~ 158 (533)
+...+.+..+.. .-|...+..|...|.+.|++++|+..|++..+.... ++...|..+ ...+.+.|+
T Consensus 288 A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~ 366 (1157)
T PRK11447 288 AIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANN 366 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCC
Confidence 444455555432 236788888999999999999999999988764321 111222222 345668899
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH--------------------
Q 009506 159 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT-------------------- 218 (533)
Q Consensus 159 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-------------------- 218 (533)
+++|+..|++..+.. +.+...+..+...|...|++++|++.|++..+.... +...+..
T Consensus 367 ~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 367 LAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 999999999988763 345677778888999999999999999988875332 2222222
Q ss_pred ----------------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 219 ----------------------LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 219 ----------------------li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
+...+...|++++|++.|++..+.. +.+...+..+...|.+.|++++|...|+++.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2234456788888888888887754 3456777788888889999999999988877
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---------------------------------------CCCC
Q 009506 277 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---------------------------------------GITP 317 (533)
Q Consensus 277 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------------------g~~p 317 (533)
+.. +.+...+..+...+...|+.++|+..++.+... ....
T Consensus 523 ~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~ 601 (1157)
T PRK11447 523 QQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP 601 (1157)
T ss_pred HcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 632 123333332323333444444444444332110 0122
Q ss_pred CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-C-ccchhhHHHHHH
Q 009506 318 DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-D-VKKAYCNCLIDL 394 (533)
Q Consensus 318 ~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~-~~~~~~~~li~~ 394 (533)
+...+..+...+.+.|+ ++|...++.+.+..|+.......++..+...|+. ++|++.++.... . .+...+..+..+
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~-~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDL-AAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 33455667777788888 9999999999999998887778888888888887 899999988764 2 244567778888
Q ss_pred HHhcCCHHHHHHHHHHHHhcc
Q 009506 395 CVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 395 ~~~~g~~~~A~~l~~~m~~~g 415 (533)
+.+.|++++|.++++++....
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999999887653
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.61 E-value=3.2e-13 Score=132.01 Aligned_cols=294 Identities=17% Similarity=0.124 Sum_probs=207.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-H
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS-L 184 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-l 184 (533)
-..+|..+.+.+-..|++++|+.+|+.+.+. +| .+..|..+..++...|+.+.|.+.|.+.++. .|+.....+ +
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 3678999999999999999999999999985 34 5788999999999999999999999998874 466554433 3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcC
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD-SWTFSSMITICSCRG 263 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 263 (533)
-...-..|++++|...|.+..+.... =.+.|+.|...+-..|+...|+..|++..+. .|+ ...|-.|...|...+
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~ 266 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEAR 266 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHh
Confidence 33334468888888888877765322 3456777777888888888888888887764 343 566777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHHHHHHHHhcCCh-HHHHHH
Q 009506 264 KVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCLLNVMTQTPK-EELGKL 340 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~-~~a~~~ 340 (533)
.+++|...|.+.... .|+ .+.+..|...|-..|.+|.|+..|++..+. .|+- ..|+.|..++...|+ .++...
T Consensus 267 ~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred cchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHH
Confidence 777777777765542 344 455666666666777777777777776653 3443 366677777777777 777777
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 341 VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
+.......|......+.|+..|...|.+ ++|..+|...-. .| -...+|.|...|.+.|++++|+.-+++.+.
T Consensus 343 YnkaL~l~p~hadam~NLgni~~E~~~~-e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 343 YNKALRLCPNHADAMNNLGNIYREQGKI-EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhccc-hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 7777777777766667777777766655 666666665432 12 233566677777777777777776666543
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.56 E-value=2.7e-11 Score=137.70 Aligned_cols=317 Identities=10% Similarity=0.008 Sum_probs=203.4
Q ss_pred HhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH------------------
Q 009506 92 EKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM------------------ 153 (533)
Q Consensus 92 ~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~------------------ 153 (533)
+...+.++.+.. ..+...+..+...|.+.|++++|++.|++..+.. +.+...+..+...+
T Consensus 370 A~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~ 447 (1157)
T PRK11447 370 AERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKALAFIASLSAS 447 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence 455555555543 3466778889999999999999999999988742 22344444444443
Q ss_pred ------------------------HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 009506 154 ------------------------GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 209 (533)
Q Consensus 154 ------------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 209 (533)
...|++++|++.|++.++.. +-+...+..+...|.+.|++++|...|+++.+...
T Consensus 448 ~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P 526 (1157)
T PRK11447 448 QRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP 526 (1157)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 23444555555555544432 12233444444455555555555555555444322
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH---------HHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 009506 210 QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW---------TFSSMITICSCRGKVSEAEAMFNEMLEAGF 280 (533)
Q Consensus 210 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~---------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 280 (533)
. +...+..+...+...|+.++|+..++.+..... .++.. .+..+...+...|+.++|.++++. .
T Consensus 527 ~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~-~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~ 599 (1157)
T PRK11447 527 N-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQW-NSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----Q 599 (1157)
T ss_pred C-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhc-ChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----C
Confidence 1 222222233333444555555555544332110 11110 112334556667777777777652 2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHH
Q 009506 281 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLL 359 (533)
Q Consensus 281 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~ 359 (533)
+.+...+..+...+.+.|+.++|+..|++..+.. ..+...+..+...+...|+ ++|.+.++.+.+..|+.......++
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la 678 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVA 678 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 4556677888899999999999999999998864 2246688889999999999 9999999999988888777777778
Q ss_pred HhhhhhccHHHHHHHHHhhhccC-c-c------chhhHHHHHHHHhcCCHHHHHHHHHHHH-hccccCCc
Q 009506 360 EEQDIEGDFKKEATELFNSISKD-V-K------KAYCNCLIDLCVNLNLLENACKLLELGL-TLEVYTDI 420 (533)
Q Consensus 360 ~~~~~~g~~~~~a~~~~~~~~~~-~-~------~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~~~~ 420 (533)
..+...|+. ++|.++|+++... + + ...+..+...+.+.|++++|+..|++.. ..|+.|..
T Consensus 679 ~~~~~~g~~-~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~~ 747 (1157)
T PRK11447 679 LAWAALGDT-AAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPTR 747 (1157)
T ss_pred HHHHhCCCH-HHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCC
Confidence 888888987 9999999987542 1 1 1356667888999999999999999885 44565543
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.54 E-value=2.9e-12 Score=125.39 Aligned_cols=315 Identities=15% Similarity=0.166 Sum_probs=180.8
Q ss_pred HhhHHHHHhhcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHH
Q 009506 92 EKSYDTRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNL-LDTMGRAKRPWQVKTIYKEM 169 (533)
Q Consensus 92 ~~~l~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l-i~~~~~~g~~~~a~~~~~~m 169 (533)
+..+...+++ ++| .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+- -..+-..|+..+|...|.+.
T Consensus 135 al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 135 ALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 3444444443 234 567789999999999999999999988876 34655443322 22222345555555555444
Q ss_pred HHCC--------------------------------CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHH
Q 009506 170 TDNG--------------------------------LSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 216 (533)
Q Consensus 170 ~~~g--------------------------------~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 216 (533)
++.. +.|+ ...|-.|-..|...+.++.|...|.+....... ..+.|
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~ 289 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAH 289 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhc
Confidence 4321 1222 234444455555555555555555444333111 23444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 009506 217 NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYG 295 (533)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~ 295 (533)
..|...|...|.++.|+..+++..+.. +.-...|+.|..++-..|++.+|.+.|++.... .|+ ....+.|...|.
T Consensus 290 gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 290 GNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYR 365 (966)
T ss_pred cceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHH
Confidence 455555555666666666666655532 122556666666666666666666666665543 233 455666666666
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHH
Q 009506 296 KAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 373 (533)
Q Consensus 296 ~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~ 373 (533)
..|.+++|..+|....+ +.|.-. .++.|...|.+.|+ ++|...+++..+..|.....++.++..|-..|+. +.|.
T Consensus 366 E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v-~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV-SAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH-HHHH
Confidence 66666666666666554 233322 55666666666666 6666667766666666666666666666666665 5555
Q ss_pred HHHhhh-ccCcc-chhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCc
Q 009506 374 ELFNSI-SKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 420 (533)
Q Consensus 374 ~~~~~~-~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~ 420 (533)
+.+.+. ...|. ....+.|...|...|+..+|+.-+++.++ ++||.
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 555443 22222 23556677777777777777777776544 34554
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.54 E-value=7.9e-11 Score=128.09 Aligned_cols=321 Identities=12% Similarity=0.077 Sum_probs=228.8
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+..++..... .-..+...+..+...+.+.|++++|.++|++..+.. +.+...+..+..++...|++++|+..+++..
T Consensus 33 ~A~~~~~~~~~-~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 33 EVITVYNRYRV-HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555544 224566678999999999999999999999987742 3356677788888999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH-------------
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE------------- 237 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------------- 237 (533)
+.. +.+.. +..+..++...|+.++|+..++++.+.... +...+..+...+...|..++|++.++
T Consensus 111 ~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~ 187 (765)
T PRK10049 111 SGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLE 187 (765)
T ss_pred HhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHH
Confidence 763 44556 888888999999999999999999987554 55555566666666666555554443
Q ss_pred ---------------------------------HHHhCCCCCCCHH-HHH----HHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 238 ---------------------------------DMKSSENCQPDSW-TFS----SMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 238 ---------------------------------~m~~~~~~~p~~~-~~~----~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
.+.+...-.|+.. .+. ..+..+...|++++|...|+.+.+.+
T Consensus 188 ~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~ 267 (765)
T PRK10049 188 ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEG 267 (765)
T ss_pred HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccC
Confidence 3332200022211 111 11334567799999999999998865
Q ss_pred CC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC---CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC----
Q 009506 280 FE-PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP---DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK---- 350 (533)
Q Consensus 280 ~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~---- 350 (533)
-. |+. ....+..+|...|++++|..+|+++.+..-.. .......+..++...++ ++|..+++.+....|.
T Consensus 268 ~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~ 346 (765)
T PRK10049 268 QIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL 346 (765)
T ss_pred CCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee
Confidence 32 332 22225778999999999999999987643211 12345566667888888 9999999998877652
Q ss_pred ---------hh--HHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 009506 351 ---------LG--YVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVY 417 (533)
Q Consensus 351 ---------~~--~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 417 (533)
.. .....++..+...|+. ++|+++|+++.. +.+...+..+...+...|++++|++.+++.....
T Consensus 347 ~~~~~~~p~~~~~~a~~~~a~~l~~~g~~-~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-- 423 (765)
T PRK10049 347 YGSPTSIPNDDWLQGQSLLSQVAKYSNDL-PQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-- 423 (765)
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--
Confidence 11 2335566777777877 999999998653 3456688999999999999999999999887654
Q ss_pred CCc
Q 009506 418 TDI 420 (533)
Q Consensus 418 ~~~ 420 (533)
|+.
T Consensus 424 Pd~ 426 (765)
T PRK10049 424 PRN 426 (765)
T ss_pred CCC
Confidence 553
No 21
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=4.7e-11 Score=112.30 Aligned_cols=251 Identities=16% Similarity=0.183 Sum_probs=181.3
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHH--cCChHH-HHHHHHHHHHCC-------------------CCCCHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGT--AGNFDG-CLNVYEEMKAIG-------------------VKPNMITYNN 148 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~-A~~~~~~m~~~g-------------------~~pd~~~~~~ 148 (533)
..--+..+|+..|...++..--.|...-+- ..+..- -.+-|-.|.+.| .+.+..+|.+
T Consensus 133 Ds~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~ 212 (625)
T KOG4422|consen 133 DSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVSI 212 (625)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHHH
Confidence 345677788888888877776666554322 222211 112222333222 3456789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009506 149 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 228 (533)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 228 (533)
||.++++--..+.|.++|++-.+...+.+..+||.+|.+-.-. ...+++.+|....+.||..|+|+++.+..+.|+
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~ 288 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGK 288 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcc
Confidence 9999999999999999999999888899999999999875432 238899999999999999999999999999998
Q ss_pred HHH----HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHH----cCCCC----CHHHHHHHHHHHH
Q 009506 229 TDE----AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE-AEAMFNEMLE----AGFEP----NLFVLTSLIQCYG 295 (533)
Q Consensus 229 ~~~----A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----~~~~~~~li~~~~ 295 (533)
++. |.+++.+|++.|+ .|...+|..+|..+++.++..+ |..++.++.. ..++| |..-|..-+..|.
T Consensus 289 F~~ar~aalqil~EmKeiGV-ePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~ 367 (625)
T KOG4422|consen 289 FEDARKAALQILGEMKEIGV-EPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICS 367 (625)
T ss_pred hHHHHHHHHHHHHHHHHhCC-CcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHH
Confidence 765 5677889999997 9999999999999999988754 4444444432 22333 3455667777788
Q ss_pred hcCChhHHHHHHHHhhhC----CCCCCHH---HHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 009506 296 KAQRTDDVVRALNRLPEL----GITPDDR---FCGCLLNVMTQTPK-EELGKLVECVEK 346 (533)
Q Consensus 296 ~~g~~~~a~~~~~~m~~~----g~~p~~~---~~~~ll~~~~~~~~-~~a~~~~~~~~~ 346 (533)
+..+.+.|.++-.-+... -+.|+.. -|..+..+.++... +...++++.+..
T Consensus 368 ~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP 426 (625)
T KOG4422|consen 368 SLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP 426 (625)
T ss_pred HhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888876665432 1233322 45677777777777 778888887664
No 22
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=6.8e-11 Score=119.26 Aligned_cols=292 Identities=11% Similarity=-0.005 Sum_probs=216.4
Q ss_pred HHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 009506 111 FSTLIKLY--GTAGNFDGCLNVYEEMKAIGVKPNMIT-YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW--NTYASLL 185 (533)
Q Consensus 111 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll 185 (533)
+..+.++. ...|+++.|.+.+.+..+. .|+... |-....++.+.|+++.|.+.|++..+.. |+. ...-...
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a 160 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHH
Confidence 44455555 3579999999999888775 355333 3344566778899999999999987653 444 3444458
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHH---Hh
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS-SMITIC---SC 261 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~-~li~~~---~~ 261 (533)
..+...|+++.|...++.+.+.... +..++..+...+...|++++|.++++.+.+.+. .+...+. .-..++ ..
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~--~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL--FDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999998755 778888999999999999999999999999874 3333332 111221 33
Q ss_pred cCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH-HHHHHHHh--cCCh-
Q 009506 262 RGKVSEAEAMFNEMLEAG---FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFC-GCLLNVMT--QTPK- 334 (533)
Q Consensus 262 ~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~--~~~~- 334 (533)
.+..+++.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.. ||.... ..++..+. ..++
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCCh
Confidence 333333344555544432 12378889999999999999999999999998754 443311 01223222 2344
Q ss_pred HHHHHHHHHHHhcCCChh--HHHHHHHHhhhhhccHHHHHHHHHh---hhccCccchhhHHHHHHHHhcCCHHHHHHHHH
Q 009506 335 EELGKLVECVEKSNSKLG--YVVKLLLEEQDIEGDFKKEATELFN---SISKDVKKAYCNCLIDLCVNLNLLENACKLLE 409 (533)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~~a~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 409 (533)
..+.+.++...+..|+.. .+...++..+.+.|++ ++|.+.|+ .....|+...+..+...+.+.|+.++|.++++
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~-~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF-IEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH-HHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 788888999899999888 7778999999999988 99999999 34456777788899999999999999999999
Q ss_pred HHH
Q 009506 410 LGL 412 (533)
Q Consensus 410 ~m~ 412 (533)
+..
T Consensus 395 ~~l 397 (409)
T TIGR00540 395 DSL 397 (409)
T ss_pred HHH
Confidence 764
No 23
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=1.3e-10 Score=116.59 Aligned_cols=291 Identities=11% Similarity=0.051 Sum_probs=223.8
Q ss_pred HHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHH
Q 009506 112 STLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMIT-YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA--SLLR 186 (533)
Q Consensus 112 ~~li~~~~--~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~ 186 (533)
..+..+.. -.|++++|.+.+....+.. ++... |-....+..+.|+++.|.+.|.++.+. .|+...+. ....
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~ 161 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVR 161 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHH
Confidence 33444443 2599999999888876642 22333 333344457899999999999999874 46654433 3467
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH------HHHHHHHHHHH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS------WTFSSMITICS 260 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~------~~~~~li~~~~ 260 (533)
.+...|+++.|.+.++++.+.... +...+..+...|.+.|++++|.+++..+.+.....++. .+|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999998755 78889999999999999999999999999887532221 23444555555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHH
Q 009506 261 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGK 339 (533)
Q Consensus 261 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~ 339 (533)
...+.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+. .+|.... ++.+....++ +++.+
T Consensus 241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 566667777777776432 3457888899999999999999999999998874 4455322 2223334466 89999
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-CccchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 340 LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVKKAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
.++...+..|+.......++..+...+++ ++|.+.|+.... .|+...|-.|...+.+.|+.++|..++++...
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~-~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEW-QEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999998889999999999988 999999998754 57888888999999999999999999998754
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.50 E-value=3.7e-10 Score=122.85 Aligned_cols=319 Identities=11% Similarity=0.011 Sum_probs=232.2
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+..++....... +.++..+..++..+.+.|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.
T Consensus 67 ~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 67 NSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455555555432 3356777889999999999999999999998752 33455 8888889999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHH----------------------------------------------HHHHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLS----------------------------------------------VYREM 204 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~----------------------------------------------~~~~m 204 (533)
+.. +-+...+..+..++.+.+..+.|++ .++.+
T Consensus 144 ~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l 222 (765)
T PRK10049 144 PRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL 222 (765)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence 864 3345555666666666666554443 33344
Q ss_pred HHc-CCCcCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 205 KEK-GMQLSVT-LY----NTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 205 ~~~-g~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
.+. ...|+.. .+ ...+.++...|++++|++.|+.+.+.+...|+. .-..+...|...|++++|..+|+++.+.
T Consensus 223 l~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~ 301 (765)
T PRK10049 223 EALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYH 301 (765)
T ss_pred HhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 322 1112211 11 111344567799999999999998875311332 2223577899999999999999998764
Q ss_pred CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-----------CCCCH---HHHHHHHHHHhcCCh-HHHHHH
Q 009506 279 GFEP---NLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-----------ITPDD---RFCGCLLNVMTQTPK-EELGKL 340 (533)
Q Consensus 279 g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~~~-~~a~~~ 340 (533)
.-.. ....+..|..++...|++++|..+++++.+.. -.|+. ..+..+...+...|+ ++|.++
T Consensus 302 ~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~ 381 (765)
T PRK10049 302 PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR 381 (765)
T ss_pred CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3111 13456677778899999999999999998652 12342 245567778888899 999999
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 341 VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
++.+....|+.......++..+...|+. ++|++.+++... .| +...+-.++..+.+.|++++|..+++.+++..
T Consensus 382 l~~al~~~P~n~~l~~~lA~l~~~~g~~-~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 382 ARELAYNAPGNQGLRIDYASVLQARGWP-RAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999988888899999898986 999999998754 34 45577788889999999999999999998753
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=1.6e-13 Score=131.36 Aligned_cols=256 Identities=18% Similarity=0.152 Sum_probs=80.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEMKAIGVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 191 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 191 (533)
.+...+.+.|++++|++++++......+| |...|..+...+-..++++.|++.++++...+- -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 44666777788888888875543322123 344444444555567777777777777776542 245556666666 567
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 271 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (533)
+++++|.+++++..+.. ++...+..++..+.+.++++++.++++.+......+.+...|..+...+.+.|+.++|.++
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777776655442 3455566677777777777777777777665433245666677777777777777777777
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCC
Q 009506 272 FNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 349 (533)
Q Consensus 272 ~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~ 349 (533)
+++..+.. |+ ....+.++..+...|+.+++.++++...+.. ..|...+..+..++...|+ ++|..+++...+.+|
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 77766642 43 5566667777777777777666666665442 2233344555555555555 555555555555555
Q ss_pred ChhHHHHHHHHhhhhhccHHHHHHHHH
Q 009506 350 KLGYVVKLLLEEQDIEGDFKKEATELF 376 (533)
Q Consensus 350 ~~~~~~~~l~~~~~~~g~~~~~a~~~~ 376 (533)
+...+...++..+...|+. ++|.++.
T Consensus 246 ~d~~~~~~~a~~l~~~g~~-~~A~~~~ 271 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRK-DEALRLR 271 (280)
T ss_dssp T-HHHHHHHHHHHT-------------
T ss_pred ccccccccccccccccccc-ccccccc
Confidence 4444444444444444433 4444443
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.45 E-value=1.2e-09 Score=117.29 Aligned_cols=295 Identities=13% Similarity=0.099 Sum_probs=194.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 194 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 194 (533)
...|...|++++|+++|+++.+.. +-|...+..++..+...++.++|++.++++... .|+...+-.++..+...++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 446666677777777777776642 223455556666677777777777777777654 35545554444444445555
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH-----------------------------------
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM----------------------------------- 239 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----------------------------------- 239 (533)
.+|++.++++.+.... +...+..+..++.+.|-...|+++..+-
T Consensus 186 ~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 186 YDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 5577777777776433 4555555555555555444444433221
Q ss_pred -------------HhCCCCCCC-HHHH----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009506 240 -------------KSSENCQPD-SWTF----SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 240 -------------~~~~~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 301 (533)
...-.-.|. ...| -=.+-++...|++.++.+.|+.|...|.+.-..+-..+.++|...++.+
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 110000121 1111 1234466778888999999999988776655667888999999999999
Q ss_pred HHHHHHHHhhhCC-----CCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCC---------------ChhHHHHHHHH
Q 009506 302 DVVRALNRLPELG-----ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS---------------KLGYVVKLLLE 360 (533)
Q Consensus 302 ~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~---------------~~~~~~~~l~~ 360 (533)
+|..+|+.+.... ..++......|.-++...++ ++|..+++.+.+..| +.......++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 9999999986543 12233345778889999999 999999998887433 22233355666
Q ss_pred hhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 361 EQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 361 ~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
.+.-.|++ .+|++.++++.. +.|......+.+.+...|.+.+|...++.....
T Consensus 425 ~~~~~gdl-~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 425 SLVALNDL-PTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 66677877 999999998853 457778999999999999999999999776554
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.43 E-value=9.7e-13 Score=126.00 Aligned_cols=257 Identities=15% Similarity=0.131 Sum_probs=108.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009506 148 NLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226 (533)
Q Consensus 148 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 226 (533)
.+-..+.+.|++++|++++++.....- +-|...|..+...+...++.+.|++.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 556778899999999999976554432 334455556666777889999999999999987655 66677777777 789
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009506 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 227 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~ 305 (533)
+++++|.++++..-+. .++...+..++..+.+.++++++.++++.+... ....+...|..+...+.+.|+.++|.+
T Consensus 91 ~~~~~A~~~~~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER---DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccc---ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999876554 356677888999999999999999999998753 235677888899999999999999999
Q ss_pred HHHHhhhCCCCCC-HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--
Q 009506 306 ALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-- 381 (533)
Q Consensus 306 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-- 381 (533)
.|++..+.. |+ ......++..+...|+ +++..+++...+..++...+...++.++...|+. ++|+..|++...
T Consensus 168 ~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~-~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY-EEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H-HHHHHHHHHHHHHS
T ss_pred HHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc-cccccccccccccc
Confidence 999998754 65 6678889999999999 8888888888777666666667888888888987 999999998764
Q ss_pred CccchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 382 DVKKAYCNCLIDLCVNLNLLENACKLLELGL 412 (533)
Q Consensus 382 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 412 (533)
+.|......+.+++.+.|+.++|..+.++..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp TT-HHHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 3467788899999999999999999988653
No 28
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.42 E-value=1.4e-09 Score=102.22 Aligned_cols=300 Identities=10% Similarity=0.027 Sum_probs=239.3
Q ss_pred HHHHHHHH--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 113 TLIKLYGT--AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 113 ~li~~~~~--~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
.+..+..+ .|+|.+|.++..+-.+.+-.| ...|-.-..+.-+.|+.+.+-..+.+..+.--.++...+-+..+....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34444433 699999999999987766443 334555566777889999999999999886335667777788888899
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHhcCC
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP------DSWTFSSMITICSCRGK 264 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~ 264 (533)
.|+++.|..-++++.+.+.. +..+......+|.+.|++.....++..+.+.+.+.+ ...+|+.+++-....+.
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999988766 778889999999999999999999999999986333 24567888888777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 343 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~ 343 (533)
.+.-...|+.... ..+-++..-..++.-+.+.|+.++|.++.++..+.+..|. .. .+-.+.+.++ +...+..+.
T Consensus 245 ~~gL~~~W~~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHH
Confidence 7776677776543 2345666777888899999999999999999988887766 22 2223445555 888888888
Q ss_pred HHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc-cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCc
Q 009506 344 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDI 420 (533)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~ 420 (533)
..+..|+.......|+..|.+.+.| .+|.+.|+... ..++...|+-+.+++.+.|++++|.++.++.+..-..|+.
T Consensus 320 ~l~~h~~~p~L~~tLG~L~~k~~~w-~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~~ 396 (400)
T COG3071 320 WLKQHPEDPLLLSTLGRLALKNKLW-GKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPNL 396 (400)
T ss_pred HHHhCCCChhHHHHHHHHHHHhhHH-HHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCCC
Confidence 8888888888889999999999987 89999998654 4678889999999999999999999999998765555554
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.41 E-value=2.6e-09 Score=114.60 Aligned_cols=318 Identities=12% Similarity=0.049 Sum_probs=239.4
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+..++..+.+.... |+..+..++..|.+.++.++|++.++++... .|+...+-.++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 456666666655433 4677778899999999999999999999874 5776666555445545677767999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-----------------------------------------------
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE----------------------------------------------- 203 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~----------------------------------------------- 203 (533)
+.. +-+...+..++.++.+.|-...|.++..+
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 875 44677888888888887755444444332
Q ss_pred -HHH-cCCCcC-HHH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 204 -MKE-KGMQLS-VTL----YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 204 -m~~-~g~~~~-~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
+.. .+-.|. ... .--.+-++...|++.++++.|+.+...+. +....+-..+.++|...++.++|..+|+.+.
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~-~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY-KMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC-CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 221 011121 111 11234567788999999999999998885 4456688899999999999999999999986
Q ss_pred HcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-----------CCCHH---HHHHHHHHHhcCCh-HH
Q 009506 277 EAG-----FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-----------TPDDR---FCGCLLNVMTQTPK-EE 336 (533)
Q Consensus 277 ~~g-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----------~p~~~---~~~~ll~~~~~~~~-~~ 336 (533)
... ..++......|.-+|...+++++|..+++++.+... .|++. .+..++..+...|+ .+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 642 233455567899999999999999999999987311 23332 34556777788899 99
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 337 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
|++.++.+....|....+...+...+...|.. .+|++.++.... +.+..+....+.++...|++++|..+.+...+.
T Consensus 435 Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p-~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 435 AQKKLEDLSSTAPANQNLRIALASIYLARDLP-RKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999965 999999977553 335557778888899999999999999877654
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.41 E-value=1.3e-09 Score=119.20 Aligned_cols=299 Identities=10% Similarity=0.039 Sum_probs=227.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCC---hhHHHHH----------------
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-G-VKPNMITYNNLLDTMGRAKR---PWQVKTI---------------- 165 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~pd~~~~~~li~~~~~~g~---~~~a~~~---------------- 165 (533)
+....-.+--...+.|+.++|.++|+..... + ..++....+-|+..|.+.+. ..++..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 4444555555567899999999999998762 1 23355566688888887766 3333333
Q ss_pred ------HHHHHH-CCC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009506 166 ------YKEMTD-NGL-SP--NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 235 (533)
Q Consensus 166 ------~~~m~~-~g~-~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (533)
++.... .+. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~ 531 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAA 531 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHH
Confidence 111111 111 33 67788888888877 88999999888877663 5544444445555789999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 009506 236 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 315 (533)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 315 (533)
|+++... .|+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 532 ~rka~~~---~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-- 605 (987)
T PRK09782 532 WQKISLH---DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-- 605 (987)
T ss_pred HHHHhcc---CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--
Confidence 9998654 4555567777888999999999999999988764 223333434444555679999999999999875
Q ss_pred CCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-C-ccchhhHHHH
Q 009506 316 TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-D-VKKAYCNCLI 392 (533)
Q Consensus 316 ~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~-~~~~~~~~li 392 (533)
.|+...+..+..++.+.|+ ++|...++......|+.......++..+...|+. ++|++.|++... . .+...+..+.
T Consensus 606 ~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~-eeAi~~l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 606 APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI-AQSREMLERAHKGLPDDPALIRQLA 684 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 4677888899999999999 9999999999999999998889999999999987 999999988653 3 3566889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcc
Q 009506 393 DLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 393 ~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
.++...|++++|+..+++..+..
T Consensus 685 ~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 685 YVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999987654
No 31
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.2e-09 Score=99.60 Aligned_cols=285 Identities=14% Similarity=0.104 Sum_probs=215.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCh
Q 009506 121 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW------NTYASLLRAYGRARYG 194 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~g~~ 194 (533)
.++.++|.++|-+|.+.. +-+..+--+|-+.|-+.|..|.|+++.+.+.++ ||. .....|.+-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 468999999999998732 224445567888999999999999999999874 442 3445667778899999
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChHHHHH
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSEAEA 270 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~ 270 (533)
|.|+++|..+.+.|.. -......|+..|-...+|++|+++-+++.+.+. .+. ...|.-|...+....+++.|..
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 9999999999886432 456778899999999999999999999888764 443 3456777778888899999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcC
Q 009506 271 MFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN 348 (533)
Q Consensus 271 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~ 348 (533)
++.+..+.+ |+ +..-..+-+.+...|++..|.+.|+...+.+..--..+...|..+|.+.|+ ++...++..+.+..
T Consensus 202 ~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 202 LLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999988754 33 333445567788999999999999999998866667789999999999999 88888877777655
Q ss_pred CChhHH--HHHHHHhhhhhccHHHHHHHH-HhhhccCccchhhHHHHHHHHhc---CCHHHHHHHHHHHHhcccc
Q 009506 349 SKLGYV--VKLLLEEQDIEGDFKKEATEL-FNSISKDVKKAYCNCLIDLCVNL---NLLENACKLLELGLTLEVY 417 (533)
Q Consensus 349 ~~~~~~--~~~l~~~~~~~g~~~~~a~~~-~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~ 417 (533)
+..... +.-++. ...| . +.|..+ .+.+..+|+...+..||+.-... |...+...+++.|...-+.
T Consensus 280 ~g~~~~l~l~~lie--~~~G-~-~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 280 TGADAELMLADLIE--LQEG-I-DAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred CCccHHHHHHHHHH--HhhC-h-HHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 544433 322222 2234 2 555554 46677889999888999876543 4566677778877655443
No 32
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.38 E-value=1.5e-09 Score=118.72 Aligned_cols=260 Identities=14% Similarity=0.066 Sum_probs=197.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
++..|..+..++.. ++.++|+..|.+.... .|+......+..++...|++++|+..|+++... .|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 67788888888877 7888899988877664 466554444455556899999999999987654 455556667778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
.+.+.|+.++|...+++..+.+.. +...+..+.....+.|++++|+..+++..+. .|+...|..+..++.+.|+++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHH
Confidence 888999999999999998887532 3333334444555669999999999998875 567888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 009506 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 345 (533)
Q Consensus 267 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~ 345 (533)
+|...|++..+.. +.+...++.+..++...|+.++|+..|++..+... -+...+..+..++...|+ ++|...++.+.
T Consensus 627 eA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 627 AAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999988753 33466777888889999999999999999887532 244577888889999999 99999999999
Q ss_pred hcCCChhHHHHHHHHhhhhhccHHHHHHHHHhh
Q 009506 346 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 378 (533)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~ 378 (533)
+..|+...+....+.......++ +.+.+-+++
T Consensus 705 ~l~P~~a~i~~~~g~~~~~~~~~-~~a~~~~~r 736 (987)
T PRK09782 705 DDIDNQALITPLTPEQNQQRFNF-RRLHEEVGR 736 (987)
T ss_pred hcCCCCchhhhhhhHHHHHHHHH-HHHHHHHHH
Confidence 98887766655555554444444 555554443
No 33
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=1.8e-12 Score=88.04 Aligned_cols=49 Identities=39% Similarity=0.666 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG 154 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~ 154 (533)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||++||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 34
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=1.9e-12 Score=87.85 Aligned_cols=50 Identities=28% Similarity=0.551 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776654
No 35
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.36 E-value=2.8e-10 Score=113.16 Aligned_cols=281 Identities=12% Similarity=0.050 Sum_probs=214.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009506 123 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSV 200 (533)
Q Consensus 123 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~ 200 (533)
+..+|+..|+.+... +.-+..+...+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 678899999996654 22233555667789999999999999999998642 123668888887665432 22222
Q ss_pred H-HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 201 Y-REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 201 ~-~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
+ +++.+.. +-...+|.++.++|.-+++.+.|++.|++....+ +....+|+.+..-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-- 483 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKALG-- 483 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhhc--
Confidence 2 2333322 2267899999999999999999999999998854 34889999999999999999999999998765
Q ss_pred CCCCHHHHHH---HHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHH
Q 009506 280 FEPNLFVLTS---LIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV 355 (533)
Q Consensus 280 ~~p~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~ 355 (533)
.|...|++ |.-.|.+.++++.|.-.|++..+.+.. +.+....+...+.+.|. ++|..+++.+...+|......
T Consensus 484 --~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 484 --VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred --CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 56666665 455789999999999999999876533 44566677778888888 999999999998888766544
Q ss_pred HHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Q 009506 356 KLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVY 417 (533)
Q Consensus 356 ~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 417 (533)
.--+..+...++. ++|+..++++.. ..+..++-.+...|.+.|+.+.|+.-|-.|.....+
T Consensus 561 ~~~~~il~~~~~~-~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 561 YHRASILFSLGRY-VEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHhhcch-HHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 3334444444666 899999998875 235568888999999999999999988877665543
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=1.5e-09 Score=100.42 Aligned_cols=201 Identities=9% Similarity=0.035 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
....+..+...|.+.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.|++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35667888899999999999999999987653 3356778888889999999999999999988764 345677888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 187 AYGRARYGEDTLSVYREMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
.|...|++++|.+.+++..+... ......+..+...+...|++++|.+.|++..... +.+...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHHHHHHHHHHHHcCCH
Confidence 99999999999999999887532 2234567777888889999999999998887754 34567788888899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 266 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
++|.+.+++..+. .+.+...+..+...+...|+.++|..+++.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988775 344567777778888888999999888877654
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.32 E-value=2e-09 Score=108.64 Aligned_cols=305 Identities=9% Similarity=-0.043 Sum_probs=207.1
Q ss_pred HHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009506 146 YNNLLDTM--GRAKRPWQVKTIYKEMTDNGLSPNW-NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222 (533)
Q Consensus 146 ~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 222 (533)
+..+..+. ...|+++.|.+.+.+..+. .|+. ..+-....++.+.|+.+.|.+.+.+..+....+.....-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 34444444 4579999999999887765 3554 34445567788899999999999998776433333444445788
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HhcC
Q 009506 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT-SLIQCY---GKAQ 298 (533)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g 298 (533)
+...|+++.|.+.++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+.. +...+. .-..++ ...+
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999875 557788999999999999999999999999988754 333332 111222 2223
Q ss_pred ChhHHHHHHHHhhhCC---CCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHH--HHHHHhhhhhccHHHHH
Q 009506 299 RTDDVVRALNRLPELG---ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEA 372 (533)
Q Consensus 299 ~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~~a 372 (533)
..++..+.+..+.+.. .+.+...+..+...+...|+ ++|.++++...+..|+..... .+........++. +.+
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~-~~~ 318 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN-EKL 318 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh-HHH
Confidence 3333333444443322 12377788889999999999 999999999999888776421 1111111222443 667
Q ss_pred HHHHhhhcc-Cc-cc--hhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCccccCccceeecccccC-hhhHHHHHHHH
Q 009506 373 TELFNSISK-DV-KK--AYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLS-LGAALTALHIW 447 (533)
Q Consensus 373 ~~~~~~~~~-~~-~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~~~~~~l~~~~-~g~~~~a~~~~ 447 (533)
.+.+++..+ .| +. ....++...|.+.|++++|.+.|+........|+... +..+...+. .|...+|.+.|
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-----~~~La~ll~~~g~~~~A~~~~ 393 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-----LAMAADAFDQAGDKAEAAAMR 393 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-----HHHHHHHHHHcCCHHHHHHHH
Confidence 777766542 33 44 5667999999999999999999996544444555433 112222233 38888999999
Q ss_pred HHHHHHHHHcCCCC
Q 009506 448 INDLSKALESGEEF 461 (533)
Q Consensus 448 ~~~l~~~~~~g~~~ 461 (533)
.+.+.-++-.++..
T Consensus 394 ~~~l~~~~~~~~~~ 407 (409)
T TIGR00540 394 QDSLGLMLAIQDNI 407 (409)
T ss_pred HHHHHHHhcccccC
Confidence 76666554444443
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=5.7e-09 Score=96.54 Aligned_cols=201 Identities=11% Similarity=0.038 Sum_probs=152.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 45667788888899999999999999888753 345678888888999999999999999988876543 5667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 301 (533)
.+...|++++|.+.|++.............+..+...+...|++++|.+.|.+..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 8899999999999999887643212345567778888899999999999999887643 234667888888888999999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 009506 302 DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 346 (533)
Q Consensus 302 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~ 346 (533)
+|...+++..+. ...+...+..+...+...|+ +++..+.+.+.+
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999988776 23344555556666666666 666665555443
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=2e-09 Score=107.30 Aligned_cols=262 Identities=13% Similarity=0.082 Sum_probs=201.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHH-HHHHCCCCCCHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTIYK-EMTDNGLSPNWNTYAS 183 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~ 183 (533)
+..+...+.++|...+++++|.++|+.+++.. ..-+..+|.+.+.-+-+ +-++..+- .+.+. -+-.+.+|-+
T Consensus 352 t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~-~~~sPesWca 426 (638)
T KOG1126|consen 352 TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLAQDLIDT-DPNSPESWCA 426 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHHHHHHhh-CCCCcHHHHH
Confidence 44667778899999999999999999998742 11377889888875532 12222222 22222 1345789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
+-++|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+...... ..+-..|.-|.-.|.+.+
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~--~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD--PRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC--chhhHHHHhhhhheeccc
Confidence 999999999999999999999887433 78899999999999999999999999887533 234556667788999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHH
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVE 342 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~ 342 (533)
+++.|+-.|++..+.+ +-+.+....+...+-+.|+.|+|+++|++.....-+--..-|. -...+...++ ++|.+.++
T Consensus 504 k~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~il~~~~~~~eal~~LE 581 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RASILFSLGRYVEALQELE 581 (638)
T ss_pred hhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHHHHHhhcchHHHHHHHH
Confidence 9999999999988754 2345666677778889999999999999987765442223344 3344445555 99999999
Q ss_pred HHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh
Q 009506 343 CVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 343 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
++++.-|+...+..+++..|.+.|+. +.|+.-|--+
T Consensus 582 eLk~~vP~es~v~~llgki~k~~~~~-~~Al~~f~~A 617 (638)
T KOG1126|consen 582 ELKELVPQESSVFALLGKIYKRLGNT-DLALLHFSWA 617 (638)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHccc-hHHHHhhHHH
Confidence 99999999999999999999999977 7777666543
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=9.9e-09 Score=97.98 Aligned_cols=252 Identities=13% Similarity=0.081 Sum_probs=124.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CC-CCHHHHHHHHHHHHhcCC
Q 009506 116 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LS-PNWNTYASLLRAYGRARY 193 (533)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~-p~~~~~~~ll~~~~~~g~ 193 (533)
.+|-...+.++++.-.+.....|+.-+...-+....+.....++++|+.+|+++++.. .+ -|..+|+.++-.-....+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 3444556777788888888877776555555555555667788999999999998763 11 245666655433222111
Q ss_pred hH-HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009506 194 GE-DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMF 272 (533)
Q Consensus 194 ~~-~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 272 (533)
+. .|..+++ . ..+ -..|...+.+-|.-.++.++|...|++..+.+ +.....|+.+..-|...++...|.+-+
T Consensus 315 Ls~LA~~v~~-i--dKy--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 315 LSYLAQNVSN-I--DKY--RPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHH-h--ccC--CccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 11 0111110 0 011 22344444444444455555555555544433 233444455555555555555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCh
Q 009506 273 NEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 351 (533)
Q Consensus 273 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~ 351 (533)
+...+-. +.|-..|-.|-++|.-.+...-|+-+|++..+.. .-|...|.+|-..|.+.++ ++|.+.+......+...
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte 465 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE 465 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence 5444422 2234444455555555555555555555444321 1133345555555555444 55555555444444444
Q ss_pred hHHHHHHHHhhhhhccHHHHHHHHHh
Q 009506 352 GYVVKLLLEEQDIEGDFKKEATELFN 377 (533)
Q Consensus 352 ~~~~~~l~~~~~~~g~~~~~a~~~~~ 377 (533)
+..+.-|+..|.+.++. ++|...|.
T Consensus 466 ~~~l~~LakLye~l~d~-~eAa~~ye 490 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDL-NEAAQYYE 490 (559)
T ss_pred hHHHHHHHHHHHHHHhH-HHHHHHHH
Confidence 44444444444444433 44444443
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.26 E-value=2e-08 Score=100.90 Aligned_cols=260 Identities=9% Similarity=-0.023 Sum_probs=200.4
Q ss_pred HHHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 108 PNAFSTL-IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN--NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 108 ~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
+..+-.+ .....+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|...++++.+.. +-+...+..+
T Consensus 117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll 193 (398)
T PRK10747 117 PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLA 193 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 4444434 44448999999999999999874 46654433 33567889999999999999999875 4567889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSV-------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
...|.+.|++++|.+++..+.+.+...+. .+|..++.......+.+...++++.+.+.- +.+......+..
T Consensus 194 ~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~--~~~~~~~~~~A~ 271 (398)
T PRK10747 194 EQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT--RHQVALQVAMAE 271 (398)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH--hCCHHHHHHHHH
Confidence 99999999999999999999987655222 234444555555566777778887775542 568888999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HH
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EE 336 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~ 336 (533)
.+...|+.++|.+++.+..+. .++... .++.+....++.+++++..+...+.. .-|......+...|.+.++ ++
T Consensus 272 ~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~ 346 (398)
T PRK10747 272 HLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQE 346 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998774 455522 23444456699999999999988653 2345567788899999999 99
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh
Q 009506 337 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
|.+.|+...+..|+...+ ..+...+...|+. ++|.+++++-
T Consensus 347 A~~~le~al~~~P~~~~~-~~La~~~~~~g~~-~~A~~~~~~~ 387 (398)
T PRK10747 347 ASLAFRAALKQRPDAYDY-AWLADALDRLHKP-EEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCH-HHHHHHHHHH
Confidence 999999999999887654 4677788888876 8898888764
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=5.5e-08 Score=88.97 Aligned_cols=279 Identities=17% Similarity=0.170 Sum_probs=205.8
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM------ITYNNLLDTMGRAKRPWQVKT 164 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~------~~~~~li~~~~~~g~~~~a~~ 164 (533)
++-.+|.+|.+ +-.-+..+.-+|-+.|.+.|..+.|+++.+.+.+. ||. ...-.|..-|...|-+|.|.+
T Consensus 53 KAvdlF~e~l~-~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 53 KAVDLFLEMLQ-EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred hHHHHHHHHHh-cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 34455556665 22334555678999999999999999999999874 554 233445566788999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 165 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTLYNTLLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 165 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 240 (533)
+|..+.+.| ..-.....-|+..|-...++++|+++-+++.+.|-.+. ...|.-|...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 999998865 34556788899999999999999999999988765543 2346666677777889999999999988
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 009506 241 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320 (533)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 320 (533)
+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+.++.+....++..
T Consensus 208 qa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 208 QAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred hhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 765 445556667788999999999999999999987644446788899999999999999999999998875555444
Q ss_pred HHHHHHHHH-hcCChHHHHHHHHHHHhcCCChhHHHHHHHHhhhhh--ccHHHHHHHHHhhh
Q 009506 321 FCGCLLNVM-TQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE--GDFKKEATELFNSI 379 (533)
Q Consensus 321 ~~~~ll~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~~a~~~~~~~ 379 (533)
..+.... ...|.+.|...+..-.+..|+...+...+-...... |.. .+-+.+++.|
T Consensus 286 --l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~-k~sL~~lr~m 344 (389)
T COG2956 286 --LMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRA-KESLDLLRDM 344 (389)
T ss_pred --HHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccch-hhhHHHHHHH
Confidence 2222222 245557777777777778888877765554333222 323 3444455554
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=4.6e-08 Score=93.54 Aligned_cols=302 Identities=13% Similarity=0.020 Sum_probs=195.1
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-----------------------------H
Q 009506 102 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD-----------------------------T 152 (533)
Q Consensus 102 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~-----------------------------~ 152 (533)
.+...|+..+-.....+.+.|....|++.|......- +-.=..|-.|.. +
T Consensus 158 ~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a 236 (559)
T KOG1155|consen 158 CGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKA 236 (559)
T ss_pred hcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHH
Confidence 3445566666666666777888888888887766521 111112221111 1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHH
Q 009506 153 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ--LSVTLYNTLLAMCADVGYTD 230 (533)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~ 230 (533)
+-.....++++.=.+.....|++-+...-+-...+.-...++++|+.+|+++.+..+- -|..+|..++-.--.+..+.
T Consensus 237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 1122233333333333444444333333333333333444555555555555544210 03344444432221111111
Q ss_pred -HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009506 231 -EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 309 (533)
Q Consensus 231 -~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 309 (533)
-|..+++ .+ +--..|..++.+-|+-.++.++|...|++..+.+ +.....|+.|-.-|....+...|.+.++.
T Consensus 317 ~LA~~v~~----id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 317 YLAQNVSN----ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred HHHHHHHH----hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 1111111 11 1223344566677888899999999999988754 22367788888999999999999999999
Q ss_pred hhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccc--h
Q 009506 310 LPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKK--A 386 (533)
Q Consensus 310 m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~--~ 386 (533)
.++-+ +-|-..|-.|-++|.-.+. .-|.-.|+......|....++..|+.+|.+.++. ++|.+.|++.-.-.|+ .
T Consensus 390 Avdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~-~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 390 AVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRL-EEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH-HHHHHHHHHHHhccccchH
Confidence 98754 3366689999999999998 9999999999999999999999999999999987 9999999987654554 6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 387 YCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
.+..|...|-+.++.++|...|++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 899999999999999999998887654
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.21 E-value=5.8e-08 Score=100.02 Aligned_cols=323 Identities=15% Similarity=0.128 Sum_probs=238.8
Q ss_pred chhhhhHHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009506 85 PRASKLKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 164 (533)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~ 164 (533)
.+.+...+..++.++++.. ..+...|.+|...|-+.|+.++++..+-..-.. .+-|..-|-.+-....+.|++++|.-
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHH
Confidence 3444556677777777654 456778999999999999999998877444332 23477889888888899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH----HHHHHHhcCCHHHHHHHHHHHH
Q 009506 165 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT----LLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 165 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~ 240 (533)
.|.+.++.. +++...+---+..|-+.|+...|...|.++.......|..-+.. ++..+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999875 56666666778889999999999999999988754333333333 3455667777799999998877
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------------------------CCCCHHHHHHHHHH
Q 009506 241 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG---------------------------FEPNLFVLTSLIQC 293 (533)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------~~p~~~~~~~li~~ 293 (533)
..+.-..+...++.++..|.+...++.|......+.... +.++...+ .+.-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence 643225567788899999999999999999888776522 22222231 23334
Q ss_pred HHhcCChhHHHHHHHHhhhCCCCC--CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHH-HHHHHhhhhhccHH
Q 009506 294 YGKAQRTDDVVRALNRLPELGITP--DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEGDFK 369 (533)
Q Consensus 294 ~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~ 369 (533)
+.+....+....+...+.+.++.| +...|.-+..++.+.|. .+|..++..+....+....++ .-++.+|...|..
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~- 465 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY- 465 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH-
Confidence 455555555666666666666444 44588889999999999 999999999887666555554 7788888888877
Q ss_pred HHHHHHHhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 370 KEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGL 412 (533)
Q Consensus 370 ~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 412 (533)
++|.+.|++... .| +...--+|...|.+.|+.|+|.+.++.|.
T Consensus 466 e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 466 EEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999988753 22 44455678888999999999999999875
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=1.1e-08 Score=107.16 Aligned_cols=262 Identities=12% Similarity=-0.038 Sum_probs=178.6
Q ss_pred CCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH---------hcCChHHHHHHHHHHH
Q 009506 141 PNMITYNNLLDTMGR-----AKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYG---------RARYGEDTLSVYREMK 205 (533)
Q Consensus 141 pd~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~m~ 205 (533)
.+...|...+.+-.. .+..++|+.+|++..+.. |+ ...|..+..+|. ..+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 345556666655322 234567888888888753 43 455655555443 2244788899998888
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-
Q 009506 206 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL- 284 (533)
Q Consensus 206 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 284 (533)
+.+.. +...+..+...+...|++++|+..|++..+.+ +.+...+..+...|...|++++|...+++..+.. |+.
T Consensus 332 ~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~ 406 (553)
T PRK12370 332 ELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRA 406 (553)
T ss_pred hcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCh
Confidence 87654 67778888888888899999999999888764 4567778888888999999999999999987753 442
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 009506 285 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQD 363 (533)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (533)
..+..++..+...|++++|...++++.+....-+...+..+..++...|+ ++|...+..+....+........+...|.
T Consensus 407 ~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 407 AAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 23334444566688899999998887765322234456667777778888 88988888887777776666677777777
Q ss_pred hhccHHHHHHHHHhhhcc----CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 364 IEGDFKKEATELFNSISK----DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 364 ~~g~~~~~a~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
..| ++|...++.+.. .+....+ +-..|.-.|+.+.+..+ +++.+.+
T Consensus 487 ~~g---~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS---ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH---HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 355555555432 2222233 45556677887777776 7776554
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=5.1e-08 Score=102.31 Aligned_cols=232 Identities=9% Similarity=-0.013 Sum_probs=168.0
Q ss_pred CCHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH---------hcCChhHHHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGT-----AGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMG---------RAKRPWQVKTIYKEMT 170 (533)
Q Consensus 106 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~---------~~g~~~~a~~~~~~m~ 170 (533)
.+...|...+++-.. .+++++|+++|++..+. .|+ ...|..+..++. ..+++++|...+++..
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 355666666666422 23567999999999874 454 445555544443 2345789999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+.. +-+...+..+...+...|++++|...|++..+.+.. +...|..+...+...|++++|+..+++..+.. +.+..
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~ 407 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAA 407 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChh
Confidence 865 456788888888999999999999999999988644 67788888999999999999999999998864 22333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH-HHHHHHHHH
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVM 329 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~ 329 (533)
.+..++..+...|++++|...++++.+..-+-+...+..+..+|...|+.++|...+.++... .|+.. ..+.+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 444455567778999999999999876532224556777888889999999999999987654 34444 344555566
Q ss_pred hcCChHHHHHHHHHHHh
Q 009506 330 TQTPKEELGKLVECVEK 346 (533)
Q Consensus 330 ~~~~~~~a~~~~~~~~~ 346 (533)
...|+ .+...++.+.+
T Consensus 486 ~~~g~-~a~~~l~~ll~ 501 (553)
T PRK12370 486 CQNSE-RALPTIREFLE 501 (553)
T ss_pred hccHH-HHHHHHHHHHH
Confidence 66664 55554444443
No 47
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.15 E-value=1.3e-09 Score=111.36 Aligned_cols=225 Identities=18% Similarity=0.190 Sum_probs=161.8
Q ss_pred hhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009506 93 KSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 172 (533)
Q Consensus 93 ~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 172 (533)
..++..+...|+.|+-+||..+|.-|+..|+.+.|- +|.-|.......+...|+.++.+...+++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 356678999999999999999999999999999999 9998887766777777888888877777776665
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHH----HcCC-----------------CcCHH----------HHHH
Q 009506 173 GLSPNWNTYASLLRAYGRARYGED---TLSVYREMK----EKGM-----------------QLSVT----------LYNT 218 (533)
Q Consensus 173 g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~m~----~~g~-----------------~~~~~----------~~~~ 218 (533)
.|-..||+.|+.+|...|++.. +++.+..+. ..|+ -||.. .|..
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5777788888888888877654 222111111 1121 11211 1222
Q ss_pred HHHHHHhc------C-----------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 009506 219 LLAMCADV------G-----------YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE 281 (533)
Q Consensus 219 li~~~~~~------g-----------~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 281 (533)
++....++ + +..-.+++....+ .+.-.|+..+|.+++..-...|+.+.|..++.+|.+.|++
T Consensus 158 llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~ck-sl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCK-SLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHH-HhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 22222111 1 0111122222222 2221589999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC
Q 009506 282 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 333 (533)
Q Consensus 282 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 333 (533)
.+.+-|-.|+-+ .+...-+..+++-|.+.|+.|+..|+...+..+...|
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 999888888876 7888889999999999999999999988777777643
No 48
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=2.4e-09 Score=101.60 Aligned_cols=215 Identities=14% Similarity=0.163 Sum_probs=138.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH------------------------------------HHHHhcCCh
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI------------------------------------TICSCRGKV 265 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li------------------------------------~~~~~~g~~ 265 (533)
.|.+.|+++.|.++++-+.+... +.-...-+.|- +.-..+|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdn-k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDN-KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccc-hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 47889999999998887776442 21111111110 011225788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHH
Q 009506 266 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~ 344 (533)
++|.+.|++.....-.-....||+= -.+-..|++++|++.|-++... +..+..+...+.+.|-...+ .+|.+++-+.
T Consensus 507 dka~~~ykeal~ndasc~ealfnig-lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIG-LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 8888888887653221122223322 2456778999999988877532 22345566667777776666 7888888887
Q ss_pred HhcCCChhHHHHHHHHhhhhhccHHHHHHHH-HhhhccCc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCccc
Q 009506 345 EKSNSKLGYVVKLLLEEQDIEGDFKKEATEL-FNSISKDV-KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQS 422 (533)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~-~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~ 422 (533)
...-|+...+++-|.+.|.+.|+. .+|.+. ++...--| +..+...|..-|....-+++|+..|++.. -++|+
T Consensus 585 ~slip~dp~ilskl~dlydqegdk-sqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~--- 658 (840)
T KOG2003|consen 585 NSLIPNDPAILSKLADLYDQEGDK-SQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPN--- 658 (840)
T ss_pred cccCCCCHHHHHHHHHHhhcccch-hhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCcc---
Confidence 777788888888889999888876 556554 44444323 45566667777788888889999888653 23344
Q ss_pred cCccceeecccccCh--hhHHHHHHHH
Q 009506 423 RSPTQWSLHLKSLSL--GAALTALHIW 447 (533)
Q Consensus 423 ~~~~~~~~~l~~~~~--g~~~~a~~~~ 447 (533)
...|.+++..+-. |.-+.|+..+
T Consensus 659 --~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 659 --QSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred --HHHHHHHHHHHHHhcccHHHHHHHH
Confidence 4458887665543 8888888776
No 49
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.06 E-value=7.9e-08 Score=96.73 Aligned_cols=254 Identities=15% Similarity=0.140 Sum_probs=176.8
Q ss_pred HhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHHhcCChhHHHH
Q 009506 92 EKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-----GV-KPNMIT-YNNLLDTMGRAKRPWQVKT 164 (533)
Q Consensus 92 ~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~pd~~~-~~~li~~~~~~g~~~~a~~ 164 (533)
.+.+..+-...+.+--..+...|...|...|+++.|..+++...+. |. .|.+.+ .+.+-..|...+++++|..
T Consensus 183 ~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ 262 (508)
T KOG1840|consen 183 GLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVN 262 (508)
T ss_pred HHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444444444444444556666999999999999999999987653 21 233322 2335567888999999999
Q ss_pred HHHHHHH-----CC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CcCH-HHHHHHHHHHHhcCCHH
Q 009506 165 IYKEMTD-----NG-LSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEK-----GM-QLSV-TLYNTLLAMCADVGYTD 230 (533)
Q Consensus 165 ~~~~m~~-----~g-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~-~~~~~li~~~~~~g~~~ 230 (533)
+|+++.. .| ..|. ..+++.|-.+|.+.|++++|...+++..+. |. .+.+ ..++.+...|+..++++
T Consensus 263 ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~E 342 (508)
T KOG1840|consen 263 LYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYE 342 (508)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchh
Confidence 9999874 22 1122 357778888899999999998888766542 21 2222 34566677788899999
Q ss_pred HHHHHHHHHHhCC--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC--CC-CHHHHHHHHHHHHhc
Q 009506 231 EAFEIFEDMKSSE--NCQPD----SWTFSSMITICSCRGKVSEAEAMFNEMLEA----GF--EP-NLFVLTSLIQCYGKA 297 (533)
Q Consensus 231 ~A~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~--~p-~~~~~~~li~~~~~~ 297 (533)
+|..+++...+.- .+.++ ..+++.|...|.+.|++++|+++|++.... +. .+ ....++.|...|.+.
T Consensus 343 ea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~ 422 (508)
T KOG1840|consen 343 EAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL 422 (508)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh
Confidence 9999987654321 01222 467899999999999999999999987642 11 12 245677888889999
Q ss_pred CChhHHHHHHHHhhh----CCC-CCCHH-HHHHHHHHHhcCCh-HHHHHHHHHHH
Q 009506 298 QRTDDVVRALNRLPE----LGI-TPDDR-FCGCLLNVMTQTPK-EELGKLVECVE 345 (533)
Q Consensus 298 g~~~~a~~~~~~m~~----~g~-~p~~~-~~~~ll~~~~~~~~-~~a~~~~~~~~ 345 (533)
++.++|.++|.+... .|. .|+.. +|..|...|.+.|+ +.|.++.+.+.
T Consensus 423 k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 423 KKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999998887533 332 23433 78888888888888 88888777655
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=2.5e-08 Score=91.12 Aligned_cols=235 Identities=17% Similarity=0.135 Sum_probs=126.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009506 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226 (533)
Q Consensus 147 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 226 (533)
+.|-.+|.+.|.+.+|.+.|+.-++. .|-+.||-.|-+.|.+..+.+.|+.+|.+-.+. ++-|+....-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 44555566666666666666655544 345555555666666666666666666555544 111333333344555555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009506 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 306 (533)
Q Consensus 227 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 306 (533)
++.++|.++++...+.. ..++.....+...|.-.++.+-|++.|+++.+.|+ -+...|+.+--+|.-.+++|.++..
T Consensus 304 ~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH--PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC--CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 66666666665555443 33444555555555555666666666666665554 3455555555555555566655555
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-C-cc
Q 009506 307 LNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-D-VK 384 (533)
Q Consensus 307 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~-~~ 384 (533)
|.+....--.|+.. ..++..|+......|++ .-|.+.|+-... + ..
T Consensus 381 f~RAlstat~~~~a-------------------------------aDvWYNlg~vaV~iGD~-nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 381 FQRALSTATQPGQA-------------------------------ADVWYNLGFVAVTIGDF-NLAKRCFRLALTSDAQH 428 (478)
T ss_pred HHHHHhhccCcchh-------------------------------hhhhhccceeEEeccch-HHHHHHHHHHhccCcch
Confidence 55544433223222 11223333333344554 555555554322 2 23
Q ss_pred chhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCcc
Q 009506 385 KAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ 421 (533)
Q Consensus 385 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~ 421 (533)
...+|.|.-.-.+.|++++|..+++.... +.|++.
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~s--~~P~m~ 463 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAKS--VMPDMA 463 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhhh--hCcccc
Confidence 34677777777888888888888876544 335543
No 51
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.4e-06 Score=90.74 Aligned_cols=335 Identities=12% Similarity=0.039 Sum_probs=173.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK--PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW--NTY 181 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~ 181 (533)
-||+..+.|.+.|.-.|++..+..+..-+...... --...|--+..+|-..|++++|...|-+-.+.. +|. ..+
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~ 345 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPL 345 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccc
Confidence 36777777888887788888888777776654211 112346667777777888888877776665532 333 334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC----CHHHHHHHHHHH------------------
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG----YTDEAFEIFEDM------------------ 239 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m------------------ 239 (533)
.-|..+|.+.|+++.+...|+...+.... +..+...|...|+..+ ..+.|..++...
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 45667777777777777777766654221 3333333333333332 222333332222
Q ss_pred -------------------HhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCH------HHHHHHH
Q 009506 240 -------------------KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA---GFEPNL------FVLTSLI 291 (533)
Q Consensus 240 -------------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~------~~~~~li 291 (533)
...+. .+.....|.+...+...|++++|...|+..... ...+|. .+--.+.
T Consensus 425 e~~d~~~sL~~~~~A~d~L~~~~~-~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPWASLDAYGNALDILESKGK-QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChHHHHHHHHHHHHHHHHcCC-CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 23333 345555566666666677777777777665443 111222 1122233
Q ss_pred HHHHhcCChhHHHHHHHHhhhCCCCCCHHH-HHHHHHHHhcC-Ch-HHHHHHHHHHHhcCCChhHHHH------------
Q 009506 292 QCYGKAQRTDDVVRALNRLPELGITPDDRF-CGCLLNVMTQT-PK-EELGKLVECVEKSNSKLGYVVK------------ 356 (533)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~-~~-~~a~~~~~~~~~~~~~~~~~~~------------ 356 (533)
..+-..++.+.|.+.|..+.+.. |.-+. |.-+. ++++. +. .++..++..+...+.......+
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~-~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~ 580 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLG-CMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW 580 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhh-HHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh
Confidence 34444555666666666655431 22221 11111 12211 11 4444444433322221111111
Q ss_pred ------------------------HHHHhhhhh-----------ccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcC
Q 009506 357 ------------------------LLLEEQDIE-----------GDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLN 399 (533)
Q Consensus 357 ------------------------~l~~~~~~~-----------g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g 399 (533)
.|+..+... -...++|+++|.+.-. +.+...-|-+.-.++..|
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg 660 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKG 660 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhcc
Confidence 111111100 0122666667665543 223444466677778888
Q ss_pred CHHHHHHHHHHHHhccccCCccccCccceeecccccCh-hhHHHHHHHHHHHHHH
Q 009506 400 LLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIWINDLSK 453 (533)
Q Consensus 400 ~~~~A~~l~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~l~~ 453 (533)
++.+|..+|.+.++... .....|-.+-+++.. |....|++.+..-+++
T Consensus 661 ~~~~A~dIFsqVrEa~~------~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 661 RFSEARDIFSQVREATS------DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred CchHHHHHHHHHHHHHh------hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888776654 122235445555554 7778887777655553
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=3.8e-06 Score=80.89 Aligned_cols=316 Identities=13% Similarity=0.126 Sum_probs=185.3
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM-ITYNNLLDTMGRAKRPWQVKTIYKEM 169 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~a~~~~~~m 169 (533)
++++++.+..... ..+...|-.-+.+=.+++++..|..++++.... -|-+ ..|--.+..=-..|++..|.++|++-
T Consensus 91 RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 91 RARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 6777887777655 456666777777777777777777777776653 1221 12333333334456666666666665
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----
Q 009506 170 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN----- 244 (533)
Q Consensus 170 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----- 244 (533)
.+ ..|+...|++.|+.=.+-..++.|..+|++..-. .|++.+|--....=.++|....|..+|+...+.-.
T Consensus 168 ~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 168 ME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred Hc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 54 3566666666666666666666666666665543 35555555544444455555544444443322100
Q ss_pred --------------------------------------------------------------------------CCCCHH
Q 009506 245 --------------------------------------------------------------------------CQPDSW 250 (533)
Q Consensus 245 --------------------------------------------------------------------------~~p~~~ 250 (533)
-+-|-.
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 011222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCChhHHHHHHHHhhh--------
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL-------FVLTSLIQCY---GKAQRTDDVVRALNRLPE-------- 312 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~---~~~g~~~~a~~~~~~m~~-------- 312 (533)
+|--.++.--..|+.+...++|++.... ++|-. ..|..+=-++ ....+.+.+.++|+...+
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFt 402 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFT 402 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccch
Confidence 2233344444456666666666665432 33311 1111111111 123445555555543322
Q ss_pred ----------------------------CCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 009506 313 ----------------------------LGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQD 363 (533)
Q Consensus 313 ----------------------------~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (533)
.|.-|...+|...|..-.+.+. +...++++...+.+|.....+.-.+..-.
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~ 482 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELET 482 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHH
Confidence 2455666666666666666666 77777777777777777666666666666
Q ss_pred hhccHHHHHHHHHhhhccCcc----chhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 364 IEGDFKKEATELFNSISKDVK----KAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 364 ~~g~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
..|+. +.|..+|.-....|. ...|.+.|+.-...|..++|..+++.+++..
T Consensus 483 ~Lgdt-dRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 483 SLGDT-DRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HhhhH-HHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 66877 999999988765552 3388899999999999999999999987653
No 53
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=6.1e-07 Score=86.57 Aligned_cols=190 Identities=14% Similarity=0.138 Sum_probs=102.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009506 216 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 295 (533)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 295 (533)
|--+..+|....+.++..+.|+.....+ +-|..+|..-..++.-.+++++|..=|++..... +-+...|.-+..+..
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld--p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD--PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALY 439 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC--CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHH
Confidence 3344445555555555666665555543 3344555555555555556666666666554421 112344444444555
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChh-------HHH-HHHHHhhhhhc
Q 009506 296 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG-------YVV-KLLLEEQDIEG 366 (533)
Q Consensus 296 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~-------~~~-~~l~~~~~~~g 366 (533)
+.++++++...|++.++. +.--+..|+-....+...++ +.|.+.++...+..|... ..+ ..++....+ +
T Consensus 440 r~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~ 517 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-E 517 (606)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-h
Confidence 666666666666666553 33344566666666666666 666666666665554421 111 222222222 3
Q ss_pred cHHHHHHHHHhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 367 DFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELG 411 (533)
Q Consensus 367 ~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 411 (533)
++ .+|..++++..+ +| ....|.+|...-.+.|+.++|+++|++.
T Consensus 518 d~-~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 518 DI-NQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred hH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33 666666665432 22 3346666666677777777777777654
No 54
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.97 E-value=3.1e-06 Score=87.62 Aligned_cols=291 Identities=15% Similarity=0.114 Sum_probs=213.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 118 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 197 (533)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 197 (533)
..-.|++++|.+++.+..... +.+...|-+|...|-..|+.+++...+-..-... +-|..-|..+-....+.|.++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 334499999999999998763 4577899999999999999999987665544432 55778999999999999999999
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHhcCChHHHHHHHH
Q 009506 198 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF----SSMITICSCRGKVSEAEAMFN 273 (533)
Q Consensus 198 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~----~~li~~~~~~g~~~~A~~~~~ 273 (533)
.-.|.+.++.... +...+---...|-+.|+...|.+.|.++..... +.|..-+ -.++..|...++-+.|.+.+.
T Consensus 227 ~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 227 RYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999987544 555555667889999999999999999987642 2222222 344666777888899999988
Q ss_pred HHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC---------------------------CCCCHHHHHHH
Q 009506 274 EMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG---------------------------ITPDDRFCGCL 325 (533)
Q Consensus 274 ~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---------------------------~~p~~~~~~~l 325 (533)
..... +-..+...++.++..|.+...++.+.....++.... +.++..++. +
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-L 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh-H
Confidence 87652 334566778899999999999999999888887622 222222312 1
Q ss_pred HHHHhcCCh-HHHHHHHHHHHhcCCChh---HHHHHHHHhhhhhccHHHHHHHHHhhhccCc---cchhhHHHHHHHHhc
Q 009506 326 LNVMTQTPK-EELGKLVECVEKSNSKLG---YVVKLLLEEQDIEGDFKKEATELFNSISKDV---KKAYCNCLIDLCVNL 398 (533)
Q Consensus 326 l~~~~~~~~-~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~ 398 (533)
.-++.+... +....+...+...+.... .++.-+.+++...|.. .+|+.+|..+...+ +..+|--+..+|...
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~-~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY-KEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH-HHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 222223333 444444444444442222 2335567788888877 99999999887532 456899999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 009506 399 NLLENACKLLELGLTL 414 (533)
Q Consensus 399 g~~~~A~~l~~~m~~~ 414 (533)
|..++|.+.++..+..
T Consensus 463 ~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLIL 478 (895)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999999988754
No 55
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.97 E-value=1.8e-05 Score=79.19 Aligned_cols=291 Identities=13% Similarity=0.060 Sum_probs=176.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----HHCCCCCCHHH-----------
Q 009506 116 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM----TDNGLSPNWNT----------- 180 (533)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~g~~p~~~~----------- 180 (533)
-+|++..-|+.|..+++..++. ++-|..+|.+-...=-.+|+.+.+.+++++- ...|+..|..-
T Consensus 414 lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a 492 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA 492 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc
Confidence 3445555666666666666654 4556666655555555566666655555432 23444443333
Q ss_pred --------------------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 009506 181 --------------------------YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 234 (533)
Q Consensus 181 --------------------------~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (533)
|+.-...|.+.+.++-|..+|....+.- .-+...|......--..|..+....
T Consensus 493 gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 493 GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHH
Confidence 3333344444445555555555554432 1244455555444445566677777
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 235 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
+|++.... |+-....|-....-+-..|++..|..++.+..+.. +-+...|..-+.....+.+++.|..+|.+...
T Consensus 572 llqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~-- 646 (913)
T KOG0495|consen 572 LLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARS-- 646 (913)
T ss_pred HHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--
Confidence 77766654 34456666666777777888888888888877754 22567788888888888888899888888765
Q ss_pred CCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc-c-CccchhhHHH
Q 009506 315 ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-K-DVKKAYCNCL 391 (533)
Q Consensus 315 ~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~-~-~~~~~~~~~l 391 (533)
..|+...|.--++..-..+. ++|.++++...+.-|+..-++-+++..+.+.++. +.|.+.|..-. . +.....|-.|
T Consensus 647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i-e~aR~aY~~G~k~cP~~ipLWllL 725 (913)
T KOG0495|consen 647 ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI-EMAREAYLQGTKKCPNSIPLWLLL 725 (913)
T ss_pred cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH-HHHHHHHHhccccCCCCchHHHHH
Confidence 45666666655555555666 8888888888888888777777777777666655 55555444322 1 1233455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc
Q 009506 392 IDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 392 i~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
...--+.|++-+|..+|+..+-.
T Consensus 726 akleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhc
Confidence 55555555555555555554433
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=2.2e-06 Score=81.11 Aligned_cols=304 Identities=14% Similarity=0.045 Sum_probs=221.0
Q ss_pred CCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-H
Q 009506 104 WRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAI-GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW-N 179 (533)
Q Consensus 104 ~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~-g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ 179 (533)
..++..+....|.+++.+ ++...|..++-.+... -++-|++....+...+...|+.++|+..|++.+-.+ |+. .
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~ 267 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVE 267 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhh
Confidence 344555566677777654 5555555555444432 356688889999999999999999999999887542 433 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009506 180 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 259 (533)
Q Consensus 180 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (533)
......-.+.+.|++++...+...+....- -+...|-.-........+++.|+.+-++....+ +.+...|-.-.+.+
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL 344 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLL 344 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHH
Confidence 223333445677888888888777765421 133344444455556778999999988887654 45666666667788
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH-HHHhc--CChHH
Q 009506 260 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQ--TPKEE 336 (533)
Q Consensus 260 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~--~~~~~ 336 (533)
...|+.++|.-.|+...... +-+...|.-|+.+|...|++.+|..+-+...+. +.-+..+...+- ..|.- .+++.
T Consensus 345 ~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEK 422 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREK 422 (564)
T ss_pred HhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHH
Confidence 89999999999999865521 246889999999999999999998877665432 222344444331 33443 34499
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc-cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 337 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
|.++++.-.+.+|..-..+..+...+...|.. +++..++++.- ..+|....+.|.+.+...+.+++|++.|...+..+
T Consensus 423 AKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~-~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 423 AKKFAEKSLKINPIYTPAVNLIAELCQVEGPT-KDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhhhccCCccHHHHHHHHHHHHhhCcc-chHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99999999999999999888888888888876 88888888765 45788899999999999999999999999877654
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.96 E-value=6.1e-06 Score=78.08 Aligned_cols=275 Identities=11% Similarity=0.064 Sum_probs=207.9
Q ss_pred hhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009506 93 KSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN 172 (533)
Q Consensus 93 ~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 172 (533)
..+..+..+.+..| ...|-.-+.+--+.|+.+.|-+.+.+..+..-.++...+-+........|+.+.|..-.+++.+.
T Consensus 104 Ekl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~ 182 (400)
T COG3071 104 EKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEM 182 (400)
T ss_pred HHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence 33333433444333 33466667777889999999999999988544567777778888899999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009506 173 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS-------VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 245 (533)
Q Consensus 173 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 245 (533)
+ +-+........++|.+.|++..+..++..|.+.|.--| ..+|+.+++-....+..+.-...+++...+-
T Consensus 183 ~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l-- 259 (400)
T COG3071 183 T-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL-- 259 (400)
T ss_pred C-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh--
Confidence 6 56778899999999999999999999999999887544 3578888888777777777777777776653
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh-CCCCCCHHHHHH
Q 009506 246 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE-LGITPDDRFCGC 324 (533)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ 324 (533)
+-+...-.+++.-+.++|+.++|.++..+..+.+..|+.. ..-.+.+-++...-++..++-.+ .+-. +..+.+
T Consensus 260 r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~t 333 (400)
T COG3071 260 RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPED--PLLLST 333 (400)
T ss_pred hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCC--hhHHHH
Confidence 5567777888899999999999999999988887777622 22344566777766666666543 3333 367778
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh
Q 009506 325 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 325 ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
|-..|.+.+. .+|...|+...+..++.... ..+...+.+.|+. .+|.+.++..
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl~~~~s~~~~-~~la~~~~~~g~~-~~A~~~r~e~ 387 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAALKLRPSASDY-AELADALDQLGEP-EEAEQVRREA 387 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCChhhH-HHHHHHHHHcCCh-HHHHHHHHHH
Confidence 8888888888 99999999887777765544 7778888888876 7777776653
No 58
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.95 E-value=9.4e-06 Score=81.21 Aligned_cols=308 Identities=11% Similarity=0.040 Sum_probs=231.8
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 009506 98 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP--NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS 175 (533)
Q Consensus 98 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 175 (533)
.+...|...|...|-.=...|-+.|..-.+..+.......|+.- -..||+.--..|.+.+.++-|..+|...++- ++
T Consensus 469 ~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp 547 (913)
T KOG0495|consen 469 ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FP 547 (913)
T ss_pred HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-cc
Confidence 34455666666666666666666666666666666665555432 1345666666777777778888888887764 34
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009506 176 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 255 (533)
Q Consensus 176 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 255 (533)
-+...|......=-..|..+....+|++....-.+ ....|-....-+-..|++..|..++.+.-+.. +-+...|-..
T Consensus 548 ~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~--pnseeiwlaa 624 (913)
T KOG0495|consen 548 CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEAN--PNSEEIWLAA 624 (913)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC--CCcHHHHHHH
Confidence 45567777666666678899999999999886433 55566666677778899999999999988765 4478889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcCCh
Q 009506 256 ITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPK 334 (533)
Q Consensus 256 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~ 334 (533)
+..-..+.+++.|..+|.+.... .|+...|..-+....-.+..++|.+++++..+. .|+-. .|-.+-..+-+.++
T Consensus 625 vKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHH
Confidence 99999999999999999987664 478888877777777789999999999988764 45654 67777777777777
Q ss_pred -HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc--cCccchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 335 -EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS--KDVKKAYCNCLIDLCVNLNLLENACKLLELG 411 (533)
Q Consensus 335 -~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 411 (533)
+.|..-+..=.+.-|.....+-+|...-.+.|+. -+|..+|++.. .+.+...|-..|.+-.+.|+.+.|..++.+.
T Consensus 701 ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~-~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 701 IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQL-VRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred HHHHHHHHHhccccCCCCchHHHHHHHHHHHhcch-hhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777766667777777777777777777865 88999998765 3457789999999999999999999888877
Q ss_pred Hhc
Q 009506 412 LTL 414 (533)
Q Consensus 412 ~~~ 414 (533)
++.
T Consensus 780 LQe 782 (913)
T KOG0495|consen 780 LQE 782 (913)
T ss_pred HHh
Confidence 654
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.93 E-value=5.6e-08 Score=99.70 Aligned_cols=257 Identities=16% Similarity=0.119 Sum_probs=142.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 129 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 208 (533)
Q Consensus 129 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 208 (533)
.++..+...|+.||.+||..+|.-|+..|+.+.|- +|..|.-...+.+...++.++.+..++++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45566777777777777888887777777777777 7777776666677777777777777777766655
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHH
Q 009506 209 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-AGFEPNLFVL 287 (533)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~ 287 (533)
.|...||+.|+.+|...||+.. ++..++ -...++..+...|.-.....++..+.- .++-||..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veq------------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n- 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQ------------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN- 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHH------------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH-
Confidence 5667777777777777777665 222222 112234455556665555555554322 234455433
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhcCCh--HHHHHHHHHHHhcCCChhHHHHHHHHhhhh
Q 009506 288 TSLIQCYGKAQRTDDVVRALNRLPELGIT-PDDRFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDI 364 (533)
Q Consensus 288 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (533)
.+......|.++.+++++..+...... |-.. +++-+..... ++...+.+...+ .++... +......-..
T Consensus 145 --~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e-~~~s~~-l~a~l~~ala 216 (1088)
T KOG4318|consen 145 --AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE-APTSET-LHAVLKRALA 216 (1088)
T ss_pred --HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc-CCChHH-HHHHHHHHHh
Confidence 333445566677777777666433211 1111 2333332222 222222222222 222222 2333333334
Q ss_pred hccHHHHHHHHHhhhccCc---cchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCcccc
Q 009506 365 EGDFKKEATELFNSISKDV---KKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSR 423 (533)
Q Consensus 365 ~g~~~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 423 (533)
.|+. +.|..++..|.+.+ +...|-.|+-+ .|+..-+..+++.|.+.|+.|+..|+
T Consensus 217 ag~~-d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 217 AGDV-DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred cCch-hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence 4554 66777777766532 12222233332 66666677777777777777776553
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.92 E-value=2.9e-06 Score=86.57 Aligned_cols=285 Identities=16% Similarity=0.151 Sum_probs=195.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhc-
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNM-ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT-YASLLRAYGRA- 191 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~- 191 (533)
...+...|++++|++.+++-... .+|. ..+......+.+.|+.++|..+|..+++.+ |+... |..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 34567889999999999875543 3454 455666778899999999999999999986 55554 44555554222
Q ss_pred ----CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 192 ----RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT-DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 192 ----g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
...+...++|+++...-. .......+.-.+.....+ ..+...+..+..+|+ | .+|+.|-..|......+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp--~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv--P--slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYP--RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV--P--SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCc--cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC--c--hHHHHHHHHHcChhHHH
Confidence 246777888888877632 222222222222221222 345555667777774 3 35677777777666666
Q ss_pred HHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHH
Q 009506 267 EAEAMFNEMLEA----G----------FEPNL--FVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVM 329 (533)
Q Consensus 267 ~A~~~~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~ 329 (533)
-..+++..+... + -.|.. .++.-+.+.|...|++++|++++++.++. .|+ +..|..-.+.+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 666666665432 1 12343 24466678888999999999999998875 466 44788888889
Q ss_pred hcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCc-cch--------hh--HHHHHHHHh
Q 009506 330 TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDV-KKA--------YC--NCLIDLCVN 397 (533)
Q Consensus 330 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~-~~~--------~~--~~li~~~~~ 397 (533)
.+.|+ .+|.+.++.....+...-.+.+-.+..+.+.|+. ++|.+++....+.. +.. .| .....+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~-e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRI-EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCH-HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999888877666656667777777876 89998887776543 111 22 667788999
Q ss_pred cCCHHHHHHHHHHHH
Q 009506 398 LNLLENACKLLELGL 412 (533)
Q Consensus 398 ~g~~~~A~~l~~~m~ 412 (533)
.|++..|++.|....
T Consensus 318 ~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 318 QGDYGLALKRFHAVL 332 (517)
T ss_pred HhhHHHHHHHHHHHH
Confidence 999999988777664
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=2.6e-07 Score=84.68 Aligned_cols=232 Identities=13% Similarity=0.036 Sum_probs=180.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY-ASLLRAYG 189 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ll~~~~ 189 (533)
-+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-.+|.+..++..|+.+|.+-++. .|-.+|| .-..+.+-
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 367888999999999999999988774 578888989999999999999999999998875 3544444 55677888
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 269 (533)
..++.++|.++|++..+.... ++.....+...|.-.++.+.|+..++++...| .-+...|+.+.-+|.-.+++|.++
T Consensus 302 am~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG--~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMG--AQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhc--CCChHHHhhHHHHHHhhcchhhhH
Confidence 899999999999999886433 66666667778888999999999999999999 478889999999999999999999
Q ss_pred HHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 009506 270 AMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 346 (533)
Q Consensus 270 ~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~ 346 (533)
--|.+....--.|+ ...|-.|-......|++..|.+.|+-....+-. ....++.|.-.-.+.|+ ++|..++.....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99988776433344 345666666667788888888888877654322 33466666666666666 666666666555
Q ss_pred cCCC
Q 009506 347 SNSK 350 (533)
Q Consensus 347 ~~~~ 350 (533)
..|+
T Consensus 458 ~~P~ 461 (478)
T KOG1129|consen 458 VMPD 461 (478)
T ss_pred hCcc
Confidence 4444
No 62
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.88 E-value=2e-06 Score=89.65 Aligned_cols=301 Identities=14% Similarity=0.116 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCH-
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMK----AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNW- 178 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~- 178 (533)
|...|-.+...|-...-+ .++.+|.... ..+-.+-....|.+.......|++++|...|+..... ...+|.
T Consensus 413 d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 444444444444433322 2254444322 3333455556666666666666666666666665543 111222
Q ss_pred -----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 009506 179 -----NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 253 (533)
Q Consensus 179 -----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 253 (533)
.+--.+...+-..++.+.|.+.|..+.+..+. -+..|--+..+.-..+...+|...+....... ..+...++
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d--~~np~ars 568 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID--SSNPNARS 568 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc--cCCcHHHH
Confidence 12222334444455666666666666654211 22233333333333455666666666666544 34555555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh------------cCChhHHHHHHHHhhhCCCCCCHH
Q 009506 254 SMITICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGK------------AQRTDDVVRALNRLPELGITPDDR 320 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~g~~p~~~ 320 (533)
.+...|.+...+..|.+-|....+. ...+|..+...|-..|.+ .+..++|+++|.+..+... -|..
T Consensus 569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~y 647 (1018)
T KOG2002|consen 569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMY 647 (1018)
T ss_pred HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhh
Confidence 5666666666666666655554432 112455555555443332 2345567777776665431 2444
Q ss_pred HHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc----CccchhhHHHHHHH
Q 009506 321 FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK----DVKKAYCNCLIDLC 395 (533)
Q Consensus 321 ~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~----~~~~~~~~~li~~~ 395 (533)
.-+-+.-.++..|. .+|..+|..+.+...+...++-.++.+|..+|++ ..|.++|+.... ..+..+.+.|..++
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy-~~AIqmYe~~lkkf~~~~~~~vl~~Lara~ 726 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY-RLAIQMYENCLKKFYKKNRSEVLHYLARAW 726 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH-HHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 55556666666777 7777777777766655555555666666667766 667777665432 23455667777777
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 009506 396 VNLNLLENACKLLELGLT 413 (533)
Q Consensus 396 ~~~g~~~~A~~l~~~m~~ 413 (533)
.+.|.+.+|.+.+.....
T Consensus 727 y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 727 YEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHhhhHHHHHHHHHHHHH
Confidence 777777777766655543
No 63
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=2.2e-06 Score=81.86 Aligned_cols=254 Identities=12% Similarity=0.030 Sum_probs=125.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 009506 153 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA--YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230 (533)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 230 (533)
+.+.|+++.|+++++-+.+..-+.-...-|.|-.. +.-..++..|.+.-+......- -+......-.+....+|+++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~d 507 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLD 507 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHH
Confidence 45666666666666666554322222222222222 2123345555555544433210 01222211222334456666
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 231 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
+|.+.+++.....- ..+...-.+.-.+-..|++++|++.|-++... +.-+..+...+...|....+...|++++.+.
T Consensus 508 ka~~~ykeal~nda--sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 508 KAAEFYKEALNNDA--SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHcCch--HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 66666666654321 11111112222345566666666666554331 1234555555666666666666666666555
Q ss_pred hhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc-cCccchhh
Q 009506 311 PELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KDVKKAYC 388 (533)
Q Consensus 311 ~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~-~~~~~~~~ 388 (533)
... +..|+.+..-|...|-+.|+ .+|.+.+-.--+.-|.....+.-|...|.... +.+++..+|++.. ..|+..-|
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtq-f~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQ-FSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhH-HHHHHHHHHHHHHhcCccHHHH
Confidence 432 33445566666666666666 66655544333333333333333333333222 4466777776654 35666667
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHH
Q 009506 389 NCLIDLCV-NLNLLENACKLLELGL 412 (533)
Q Consensus 389 ~~li~~~~-~~g~~~~A~~l~~~m~ 412 (533)
..||..|. +.|++++|+++++...
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHH
Confidence 66665543 4577777777776654
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.85 E-value=1.2e-06 Score=88.21 Aligned_cols=233 Identities=20% Similarity=0.233 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-CcCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCC
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEK-----GM-QLSVTL-YNTLLAMCADVGYTDEAFEIFEDMKS-----SENCQ 246 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~ 246 (533)
.+...|..+|...|+++.|+.+++...+. |. .|.+.+ .+.+...|...+++++|..+|+++.. .|.-.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444555555556666655555544332 21 112111 22233455555555555555555432 11101
Q ss_pred C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhhC---CC
Q 009506 247 P-DSWTFSSMITICSCRGKVSEAEAMFNEMLE-----AGF-EPNL-FVLTSLIQCYGKAQRTDDVVRALNRLPEL---GI 315 (533)
Q Consensus 247 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~ 315 (533)
| -..+++.|...|.+.|++++|...+++..+ .|. .|.+ ..++.+...|+..+++++|..++.+..+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 234445555555666665555555554322 111 1222 12344444555556666665555543221 11
Q ss_pred CCCH----HHHHHHHHHHhcCCh-HHHHHHHHHHHhc--------CCChhHHHHHHHHhhhhhccHHHHHHHHHhhh---
Q 009506 316 TPDD----RFCGCLLNVMTQTPK-EELGKLVECVEKS--------NSKLGYVVKLLLEEQDIEGDFKKEATELFNSI--- 379 (533)
Q Consensus 316 ~p~~----~~~~~ll~~~~~~~~-~~a~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~--- 379 (533)
.++. .+++.|-..|...|+ .+|.++++.+... .+..+..++.+...|.+.+.. ++|.++|.+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~-~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKY-EEAEQLFEEAKDI 438 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhccc-chHHHHHHHHHHH
Confidence 1222 255556666666666 6666655544321 122233445555555444332 4444444332
Q ss_pred ----cc-Ccc-chhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 380 ----SK-DVK-KAYCNCLIDLCVNLNLLENACKLLELGL 412 (533)
Q Consensus 380 ----~~-~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 412 (533)
.. .++ ..+|..|...|.+.|+++.|+++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 222 3488999999999999999999988875
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=2.2e-05 Score=78.08 Aligned_cols=302 Identities=9% Similarity=-0.069 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH--
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNMI-TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS-- 183 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-- 183 (533)
+..|..+...+...|+.+.+.+.+....... ..++.. ........+...|++++|.+++++..+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 3446666667777788888777776655431 122321 12222334567889999999999888753 334444442
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 009506 184 -LLRAYGRARYGEDTLSVYREMKEKGMQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 261 (533)
Q Consensus 184 -ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (533)
+.......+..+.+.+.++. .....|+ ......+...+...|++++|++.+++..+.. +.+...+..+..+|..
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~ 160 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHH
Confidence 12222224455555555544 1122233 3444455677888999999999999988865 4567778888889999
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCCHHHH-H--HHHHHHhcCCh
Q 009506 262 RGKVSEAEAMFNEMLEAGF-EPNL--FVLTSLIQCYGKAQRTDDVVRALNRLPELGI-TPDDRFC-G--CLLNVMTQTPK 334 (533)
Q Consensus 262 ~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~-~--~ll~~~~~~~~ 334 (533)
.|++++|...+++..+..- .++. ..|..+...+...|+.++|..+|++...... .+..... + .++..+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 9999999999988776421 1232 3455677888899999999999998754332 1111111 1 33333444443
Q ss_pred -HHHHHH---HHHHHhcCCC-hhHHH-HHHHHhhhhhccHHHHHHHHHhhhccCc-----------cchhhHHHHHHHHh
Q 009506 335 -EELGKL---VECVEKSNSK-LGYVV-KLLLEEQDIEGDFKKEATELFNSISKDV-----------KKAYCNCLIDLCVN 397 (533)
Q Consensus 335 -~~a~~~---~~~~~~~~~~-~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~~~-----------~~~~~~~li~~~~~ 397 (533)
..+.++ ........+. ...+. ......+...|+. ++|..+++.+.... .+...-...-++..
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDK-DALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 222222 2222221111 11111 2344445555655 77777776654311 11122333445678
Q ss_pred cCCHHHHHHHHHHHHhcc
Q 009506 398 LNLLENACKLLELGLTLE 415 (533)
Q Consensus 398 ~g~~~~A~~l~~~m~~~g 415 (533)
.|+.++|..++......+
T Consensus 320 ~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 320 EGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 899999999888776443
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.84 E-value=7.7e-06 Score=78.70 Aligned_cols=197 Identities=12% Similarity=0.014 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
...|..+...|.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|...|++..+.. +-+..+|..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4568888889999999999999999998753 2367889999999999999999999999998753 2346788888888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 267 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (533)
+...|++++|.+.|+...+.... +. ........+...++.++|.+.|++..... .++...+ .+ .....|+..+
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~--~~~~~~~-~~--~~~~lg~~~~ 214 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL--DKEQWGW-NI--VEFYLGKISE 214 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC--CccccHH-HH--HHHHccCCCH
Confidence 99999999999999999886443 22 12222233455678999999997655432 3333222 22 2334556555
Q ss_pred HHHHHHHHHHcC-----CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 268 AEAMFNEMLEAG-----FEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 268 A~~~~~~m~~~g-----~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
+ +.+..+.+.. +.| ....|..+...+.+.|++++|...|++..+.+
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4 3555544311 011 23578888899999999999999999988765
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.81 E-value=5.2e-06 Score=79.87 Aligned_cols=219 Identities=8% Similarity=-0.069 Sum_probs=142.6
Q ss_pred CChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 122 GNFDGCLNVYEEMKAIG-VKPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 198 (533)
Q Consensus 122 g~~~~A~~~~~~m~~~g-~~pd--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 198 (533)
+..+.++.-+.++.... ..|+ ...|..+...+.+.|+.++|...|++..+.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45666777777776432 1222 3457777778888899999999888888764 345788888888899999999999
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 199 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 199 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
..|++..+.... +..+|..+...+...|++++|++.|+...+.. |+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~---P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD---PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 999888876544 56677778888888899999999998887753 43222222223344567888888888765432
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC---CCC--C-CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC
Q 009506 279 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL---GIT--P-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 350 (533)
Q Consensus 279 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~--p-~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~ 350 (533)
. .++...+ .+. ....|+.+.+ +.+..+.+. .+. | ....|..+...+.+.|+ ++|...|+.....+|.
T Consensus 195 ~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 195 L-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred C-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 1 2332222 222 2334555443 344444321 111 1 12366777777778888 8888888887777753
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.79 E-value=7.3e-06 Score=72.02 Aligned_cols=182 Identities=15% Similarity=0.040 Sum_probs=83.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009506 149 LLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 228 (533)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 228 (533)
|--.|.+.|+...|.+-+++.++.. +-+..+|..+...|.+.|..+.|.+-|+........ +..+.|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 3334444555555555555544432 222344444444555555555555555544443322 34444444445555555
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 229 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 229 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (533)
+++|...|++........--..+|..+.-+..+.|+.+.|...|++-.+.. +-...+...+.+...+.|++-.|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 555555555544432211123444455444455555555555555544422 1113334444444455555555555555
Q ss_pred HhhhCCCCCCHHHHHHHHHHHhcCCh
Q 009506 309 RLPELGITPDDRFCGCLLNVMTQTPK 334 (533)
Q Consensus 309 ~m~~~g~~p~~~~~~~ll~~~~~~~~ 334 (533)
.....+. ++....-..|..-...|+
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd 222 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGD 222 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhcc
Confidence 5544433 444444444444444444
No 69
>PF12854 PPR_1: PPR repeat
Probab=98.74 E-value=1.3e-08 Score=62.11 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 009506 103 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEM 134 (533)
Q Consensus 103 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 134 (533)
|+.||..+||+||++|++.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666665
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.2e-05 Score=77.48 Aligned_cols=265 Identities=10% Similarity=-0.003 Sum_probs=115.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
++...-.-.+-+-..+++.+..++++.+.+. .+++...+..=|.++...|+..+-..+=.+|.+. .+-...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3333334444444455555555555555443 1233334444444455555544444444444443 1233445555544
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
-|.-.|+..+|.+.|.+....+.. =...|-.....|+-.|..+.|...+...-+.- +-...-+--+.--|.+.+++.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcchHHHHHHHHHHhccHH
Confidence 444445555555555544332111 12344444555555555555555544333211 111111222223344455555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC----C--CCCCHHHHHHHHHHHhcCCh-HHHHH
Q 009506 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL----G--ITPDDRFCGCLLNVMTQTPK-EELGK 339 (533)
Q Consensus 267 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g--~~p~~~~~~~ll~~~~~~~~-~~a~~ 339 (533)
.|.+.|.+..... +-|+..++-+--...+.+.+.+|..+|+..... + ......+++.|-.+|.+.+. ++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 5555555443321 122334444443334445555555555544311 0 00122344444445555555 55555
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhh
Q 009506 340 LVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 378 (533)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~ 378 (533)
.+++.....|........++..|...|++ +.|.+.|++
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnl-d~Aid~fhK 514 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNL-DKAIDHFHK 514 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcCh-HHHHHHHHH
Confidence 55555555555444444555555555544 555555444
No 71
>PF12854 PPR_1: PPR repeat
Probab=98.71 E-value=1.8e-08 Score=61.47 Aligned_cols=26 Identities=23% Similarity=0.557 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHH
Q 009506 176 PNWNTYASLLRAYGRARYGEDTLSVY 201 (533)
Q Consensus 176 p~~~~~~~ll~~~~~~g~~~~a~~~~ 201 (533)
||..|||+||++|++.|++++|.++|
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~ 30 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELF 30 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHH
Confidence 33333333333333333333333333
No 72
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.71 E-value=1.3e-06 Score=82.97 Aligned_cols=232 Identities=16% Similarity=0.131 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PNWNTYASLLR 186 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~ 186 (533)
.....-+.++|...|+++.++ .++.... .|.......+...+...++-+.++.-+++....... .|.........
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 444556778888888877544 4443332 566655544444443334444555555444433333 23333333445
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH---HHHHHHHhcC
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS---SMITICSCRG 263 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~---~li~~~~~~g 263 (533)
.+...|++++|++++..- -+.......+..|.+.++++.|.+.++.|.+.+ .|....+ +.+..+.-.+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCch
Confidence 667789999998888643 266777778899999999999999999998743 3433322 3333333345
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh--HHHHHHH
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--EELGKLV 341 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~a~~~~ 341 (533)
.+.+|..+|+++.+. +.++..+.+.+..+....|++++|.+++.+..+.+. -|..+...++.+....|+ +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 799999999997653 567888999999999999999999999998766542 244566667777777777 6778888
Q ss_pred HHHHhcCCChhHH
Q 009506 342 ECVEKSNSKLGYV 354 (533)
Q Consensus 342 ~~~~~~~~~~~~~ 354 (533)
..+....|+....
T Consensus 260 ~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 260 SQLKQSNPNHPLV 272 (290)
T ss_dssp HHCHHHTTTSHHH
T ss_pred HHHHHhCCCChHH
Confidence 8888888876544
No 73
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.2e-05 Score=77.88 Aligned_cols=220 Identities=15% Similarity=0.144 Sum_probs=172.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 009506 154 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 233 (533)
Q Consensus 154 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 233 (533)
.-.|+.-.+..-|+..++..-.++ ..|--+..+|....+-++..+.|.+..+.+.. +..+|.+-..++.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 346788888999998887653333 33777788899999999999999999888766 7788888888888899999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 234 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
.=|++..... +-+...|--+.-+.-+.+.+++++..|++.++. ++-.+..|+...+.+...++++.|.+.|+..++.
T Consensus 415 aDF~Kai~L~--pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAISLD--PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHhhcC--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999988754 446777777777777889999999999997664 5556889999999999999999999999998764
Q ss_pred C-----CCCCHH--HHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc
Q 009506 314 G-----ITPDDR--FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 380 (533)
Q Consensus 314 g-----~~p~~~--~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~ 380 (533)
. +..+.. +--.++..- =.++ .+|..++....+.+|........|+....++|++ ++|+++|++--
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i-~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKI-DEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH-HHHHHHHHHHH
Confidence 2 111221 111222211 1255 8999999999999999998888888888899987 99999998753
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.63 E-value=3.6e-05 Score=67.79 Aligned_cols=198 Identities=10% Similarity=-0.008 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 189 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 189 (533)
+...|.-.|.+.|++..|..-+++..+.. +-+..+|..+...|-+.|..+.|.+-|++..+.. +-+..+.|..-..+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45568889999999999999999999853 2356788899999999999999999999999764 345678899999999
Q ss_pred hcCChHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 190 RARYGEDTLSVYREMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
..|++++|.+.|++....-. .--..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+.-.+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHH
Confidence 99999999999999887522 1235678888888999999999999999988865 44567788899999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 269 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 269 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
...++.....+. ++..+.-..|+.-...|+.+.+.++=..+..
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999877665 8888888888888889999988887666654
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.62 E-value=6.9e-05 Score=74.42 Aligned_cols=259 Identities=14% Similarity=0.050 Sum_probs=157.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYG 189 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~ 189 (533)
...+...|++++|.+++++..+.. +.|...++. ...+.. .+..+.+.+.+.. .....|+ ......+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHH
Confidence 344567899999999999988752 234444442 223333 3445555555544 1222333 345556677888
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHhcCChHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS--WTFSSMITICSCRGKVSE 267 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~ 267 (533)
..|++++|...+++..+.... +...+..+...|...|++++|...+++........++. ..|..+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999987644 67788888999999999999999999887653212332 346678889999999999
Q ss_pred HHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCChhHHHHH--HHHhhhCCC--CCCHHHHHHHHHHHhcCCh-HHHH
Q 009506 268 AEAMFNEMLEAGF-EPNLFVL-T--SLIQCYGKAQRTDDVVRA--LNRLPELGI--TPDDRFCGCLLNVMTQTPK-EELG 338 (533)
Q Consensus 268 A~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~a~~~--~~~m~~~g~--~p~~~~~~~ll~~~~~~~~-~~a~ 338 (533)
|.++|++...... .+..... + .++.-+...|..+.+.++ +........ ............++...|+ +++.
T Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~ 284 (355)
T cd05804 205 ALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALD 284 (355)
T ss_pred HHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHH
Confidence 9999999864321 1222211 1 333344445544333332 111111111 1111222245666667777 8888
Q ss_pred HHHHHHHhcCCC---hh----HHH--HHHHHhhhhhccHHHHHHHHHhhh
Q 009506 339 KLVECVEKSNSK---LG----YVV--KLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 339 ~~~~~~~~~~~~---~~----~~~--~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
.+++.+...... .. .+. ......+...|+. ++|.+.+...
T Consensus 285 ~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~-~~A~~~L~~a 333 (355)
T cd05804 285 KLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY-ATALELLGPV 333 (355)
T ss_pred HHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH-HHHHHHHHHH
Confidence 888877653222 11 111 2223445566776 7777766543
No 76
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.60 E-value=0.00058 Score=66.29 Aligned_cols=312 Identities=13% Similarity=0.150 Sum_probs=183.4
Q ss_pred HhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009506 92 EKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 171 (533)
Q Consensus 92 ~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (533)
+++|+.+.. .+.|+...|++.|+.=.+.+.++.|..+|++..- +.|++.+|--...-=-++|....+..+|+...+
T Consensus 160 aRqiferW~--~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 160 ARQIFERWM--EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHH--cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 344544443 3678888888888888888888888888888765 347777776666655666666666666655432
Q ss_pred C-CC-CCCHHHHHHHHHHHHhcCChHHHHHHH--------------------------------------------HHHH
Q 009506 172 N-GL-SPNWNTYASLLRAYGRARYGEDTLSVY--------------------------------------------REMK 205 (533)
Q Consensus 172 ~-g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~--------------------------------------------~~m~ 205 (533)
. |- .-+...+++....=.++..++.|.-+| +.+.
T Consensus 236 ~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 236 FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 1 10 000111111111101111111111111 1111
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------------------------------------------
Q 009506 206 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE------------------------------------------ 243 (533)
Q Consensus 206 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------------------------------------ 243 (533)
..+ ..|-.+|--.+..-...|+.+...++|++....-
T Consensus 316 ~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 316 SKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred HhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 111 2244455555555555556665555555554321
Q ss_pred CCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009506 244 NCQPDSWTFSSMITIC----SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 319 (533)
Q Consensus 244 ~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 319 (533)
.++-..+||.-+--+| .++.++..|.+++... -|.-|-..+|...|..=.+.+.+|.+..+|++..+.+.. +.
T Consensus 395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A--IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c 471 (677)
T KOG1915|consen 395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA--IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NC 471 (677)
T ss_pred hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH--hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hh
Confidence 1122233333222222 2455666666666553 356788888988898889999999999999999987533 55
Q ss_pred HHHHHHHHHHhcCCh-HHHHHHHHHHHhcC-CChhHHH-HHHHHhhhhhccHHHHHHHHHhhhcc-CccchhhHHHHHHH
Q 009506 320 RFCGCLLNVMTQTPK-EELGKLVECVEKSN-SKLGYVV-KLLLEEQDIEGDFKKEATELFNSISK-DVKKAYCNCLIDLC 395 (533)
Q Consensus 320 ~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~-~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~-~~~~~~~~~li~~~ 395 (533)
.+|.-....-...|+ +.+..+|....... .+....+ ...++.-..+|.. +.|..+++++.. .....+|-++...-
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~-ekaR~LYerlL~rt~h~kvWisFA~fe 550 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF-EKARALYERLLDRTQHVKVWISFAKFE 550 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH-HHHHHHHHHHHHhcccchHHHhHHHHh
Confidence 577777777778888 99999998766432 2222222 5666666677877 999999998764 33444676665544
Q ss_pred H-----hcC-----------CHHHHHHHHHHHH
Q 009506 396 V-----NLN-----------LLENACKLLELGL 412 (533)
Q Consensus 396 ~-----~~g-----------~~~~A~~l~~~m~ 412 (533)
. +.| ....|..+|+...
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred ccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 3 334 5667888888764
No 77
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=3.4e-05 Score=83.53 Aligned_cols=224 Identities=12% Similarity=0.113 Sum_probs=183.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-----NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 181 (533)
....|-..|....+.++.++|++++++.... +.+ -...|.++++.-...|.-+...++|++..+.. ---..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4567888888999999999999999998753 212 23578888888888888899999999998753 234678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHH
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD---SWTFSSMITI 258 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~ 258 (533)
..|...|.+.+.+++|.++|+.|.++ +.-...+|...+..+.+..+-+.|.+++.+..+. -|- .....-.+..
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHH
Confidence 89999999999999999999999876 2236788999999999999999999999988774 343 3444555666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH--HHHHHHHHHhcCChHH
Q 009506 259 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR--FCGCLLNVMTQTPKEE 336 (533)
Q Consensus 259 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~ 336 (533)
-.+.|+.+.+..+|+..... .+.-...|+..|+.-.++|+.+.+..+|++....++.|... .|...|..-...|+++
T Consensus 1610 EFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 77899999999999998764 34457889999999999999999999999999999888764 7777777777777733
Q ss_pred HH
Q 009506 337 LG 338 (533)
Q Consensus 337 a~ 338 (533)
..
T Consensus 1689 ~v 1690 (1710)
T KOG1070|consen 1689 NV 1690 (1710)
T ss_pred hH
Confidence 33
No 78
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=5.6e-05 Score=74.72 Aligned_cols=264 Identities=10% Similarity=-0.021 Sum_probs=188.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
|....-.-..-|...+++.+..++++...+.. +++...+..-|.++...|+..+-..+=..|.+.-+. ...+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 34444444555667788888888888888753 566677777777888888888877777788776433 6778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 301 (533)
-|...|...+|.+.|.+....+ +--...|-.....|+-.|.-|+|...+...-+.- +-..--+.-+---|.+.+..+
T Consensus 321 YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 8888899999999998776543 2346678888888888899898888887765420 111111222334567788899
Q ss_pred HHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCh-HHHHHHHHHHHh----cC---CChhHHHHHHHHhhhhhccHHHHH
Q 009506 302 DVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEK----SN---SKLGYVVKLLLEEQDIEGDFKKEA 372 (533)
Q Consensus 302 ~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~-~~a~~~~~~~~~----~~---~~~~~~~~~l~~~~~~~g~~~~~a 372 (533)
.|.++|.+... +-|+ +...+.+--.....+. .+|..+|+.... .. +.....++.|+..|.+++.. ++|
T Consensus 398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~-~eA 474 (611)
T KOG1173|consen 398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY-EEA 474 (611)
T ss_pred HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH-HHH
Confidence 99999988764 4454 4455555555555556 888888876552 11 22334458889999999876 899
Q ss_pred HHHHhhhc--cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 373 TELFNSIS--KDVKKAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 373 ~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
+..|++.- .+.+..++.++.-.|...|+++.|++.|.+.+.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99888764 245777899999999999999999999987653
No 79
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.55 E-value=1.5e-05 Score=86.09 Aligned_cols=203 Identities=14% Similarity=0.155 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP---DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 288 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 288 (533)
....|-..|......++.++|.+++++....=.+.- -...|.++++.-..-|.-+...++|++..+. --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 455666667777777777777777777654210011 1345666666666667777788888877663 12245677
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC--hhHHHHHHHHhhhhh
Q 009506 289 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK--LGYVVKLLLEEQDIE 365 (533)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 365 (533)
.|...|.+.+..++|.++|+.|.+. +.-....|...+..+.+..+ +.|..++....+.-|. +..++.-.+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7888888888888888888888654 22455678888888888877 7777788887777766 555667777777788
Q ss_pred ccHHHHHHHHHhhhccC--ccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccC
Q 009506 366 GDFKKEATELFNSISKD--VKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYT 418 (533)
Q Consensus 366 g~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 418 (533)
|+- ++++.+|+..... .....|+..|+.-.++|+.+.+..+|++....++.|
T Consensus 1614 GDa-eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDA-ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCc-hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 876 8999999887542 256799999999999999999999999998877654
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.53 E-value=6.4e-05 Score=76.90 Aligned_cols=257 Identities=12% Similarity=0.081 Sum_probs=177.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc----
Q 009506 151 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV---- 226 (533)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---- 226 (533)
..+...|++++|++.++.-... +......+......+.+.|+.++|..++..+.+.+.. +..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 4467889999999999775543 3334566677888999999999999999999998654 555555555555222
Q ss_pred -CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009506 227 -GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV-SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVV 304 (533)
Q Consensus 227 -g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 304 (533)
.+.+...++++++.... |.......+.-.+.....+ ..+...+..+...|++ .+|+.|-..|......+-..
T Consensus 90 ~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred cccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 35788889999887753 3333332222222222223 2345555666677764 34555666666555666566
Q ss_pred HHHHHhhhC----C----------CCCCHH--HHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhcc
Q 009506 305 RALNRLPEL----G----------ITPDDR--FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 367 (533)
Q Consensus 305 ~~~~~m~~~----g----------~~p~~~--~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (533)
+++...... + -.|... ++.-+...|...|+ ++|.++++..+...|........-+..+-..|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 666665432 1 123332 44555667778899 999999999999999998888888888889998
Q ss_pred HHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009506 368 FKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEV 416 (533)
Q Consensus 368 ~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 416 (533)
+ ++|.+.++.... ..|..+=+-.+..+.++|+.++|.+++......+.
T Consensus 244 ~-~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 244 L-KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred H-HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 8 888888887764 23555666677788999999999999988766554
No 81
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.53 E-value=0.00052 Score=69.04 Aligned_cols=167 Identities=10% Similarity=0.107 Sum_probs=93.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhhC----------CCCC
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN---LFVLTSLIQCYGKAQRTDDVVRALNRLPEL----------GITP 317 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------g~~p 317 (533)
.|..+...|-..|+++.|..+|++..+-.++-- ..+|-.-...=.++.+++.|+++.++.... |-.|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 455677777788888888888887766433211 233444444445666777777776665321 1111
Q ss_pred -------CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc---Cccc-
Q 009506 318 -------DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK---DVKK- 385 (533)
Q Consensus 318 -------~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~---~~~~- 385 (533)
....|...++..-..|- +...++++.+.....-...++-.....+. .....+++.+.+++-.. -|++
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHH
Confidence 11234444444445555 66666777766654444433311111111 12244777777765432 2333
Q ss_pred hhhHHHHHHHHhc---CCHHHHHHHHHHHHhccccCC
Q 009506 386 AYCNCLIDLCVNL---NLLENACKLLELGLTLEVYTD 419 (533)
Q Consensus 386 ~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~~~ 419 (533)
..|++.+.-+.+. -.++.|..+|++.++ |+.|.
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 3787777766543 358899999999888 66554
No 82
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.47 E-value=8.4e-06 Score=77.49 Aligned_cols=248 Identities=14% Similarity=0.098 Sum_probs=148.0
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 117 LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 196 (533)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 196 (533)
-+.-.|++..++.-.+ .....-..+......+.+++...|+++.++ .++.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444688888886665 332211223445556778888888877544 4444333 5666666555544443344444
Q ss_pred HHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009506 197 TLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 275 (533)
Q Consensus 197 a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (533)
+..-+++........ +..........+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444333332222 2222233335577789999999988642 34566777889999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC
Q 009506 276 LEAGFEPNLFVLTSLIQCYG----KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 350 (533)
Q Consensus 276 ~~~g~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~ 350 (533)
.+.+ .| .+...|..++. ..+.+.+|..+|+++.+. ..++..+.+.+..+....|+ ++|.+++......++.
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 8742 34 33344444443 335689999999998765 56778888888888888888 8888888877777777
Q ss_pred hhHHHHHHHHhhhhhccHHHHHHHHHhhhc
Q 009506 351 LGYVVKLLLEEQDIEGDFKKEATELFNSIS 380 (533)
Q Consensus 351 ~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~ 380 (533)
....+..++....-.|+..+.+.+++.++.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 666654444444444433244555555554
No 83
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.39 E-value=0.0014 Score=66.09 Aligned_cols=291 Identities=13% Similarity=0.129 Sum_probs=191.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----------
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN---MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG----------- 173 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----------- 173 (533)
...|..+.+.|-.+|+++.|+.+|++......+-- ..+|......=.+..+++.|+++.++....-
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~ 466 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNS 466 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCC
Confidence 34688999999999999999999999876533211 2344444455556778888888877664311
Q ss_pred CCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 009506 174 LSP------NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 247 (533)
Q Consensus 174 ~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 247 (533)
.++ +...|...++.--..|-++....+|+.+.+..+.-...+.| ....+-...-++++.+++++-..... .|
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk-~p 544 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFK-WP 544 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCC-Cc
Confidence 111 22344455555556788888899999998876642222222 22233445568899999988766553 44
Q ss_pred C-HHHHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHhhhCCCCCCHH-
Q 009506 248 D-SWTFSSMITICSC---RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC--YGKAQRTDDVVRALNRLPELGITPDDR- 320 (533)
Q Consensus 248 ~-~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~- 320 (533)
+ ...|++-+.-+.+ ...++.|..+|++.++ |.+|...-+.-|+-+ =-+.|....|+.++++... ++.+...
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l 622 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRL 622 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHH
Confidence 4 3456666655554 3468999999999988 666654433333322 2356888999999999654 4555544
Q ss_pred -HHHHHHHHHhc-CChHHHHHHHHHHHhcCCChhHHH--HHHHHhhhhhccHHHHHHHHHhhhc----cCccchhhHHHH
Q 009506 321 -FCGCLLNVMTQ-TPKEELGKLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEATELFNSIS----KDVKKAYCNCLI 392 (533)
Q Consensus 321 -~~~~ll~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~~a~~~~~~~~----~~~~~~~~~~li 392 (533)
.|++.|.--+. -|-.....+++..++.-|+..... --+.++-.+.|+. +.|..++.--. ...+...|++.=
T Consensus 623 ~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEi-dRARaIya~~sq~~dPr~~~~fW~twk 701 (835)
T KOG2047|consen 623 DMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEI-DRARAIYAHGSQICDPRVTTEFWDTWK 701 (835)
T ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhH-HHHHHHHHhhhhcCCCcCChHHHHHHH
Confidence 78877765543 333666678887777766554332 3345666777987 99999886543 233566999999
Q ss_pred HHHHhcCCHHH
Q 009506 393 DLCVNLNLLEN 403 (533)
Q Consensus 393 ~~~~~~g~~~~ 403 (533)
..-.++|+-+.
T Consensus 702 ~FEvrHGnedT 712 (835)
T KOG2047|consen 702 EFEVRHGNEDT 712 (835)
T ss_pred HHHHhcCCHHH
Confidence 99999999433
No 84
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.37 E-value=0.00054 Score=77.18 Aligned_cols=300 Identities=13% Similarity=0.037 Sum_probs=158.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC------CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHH
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGV------KPNM--ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW----NTYA 182 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~------~pd~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~ 182 (533)
...+...|++++|..+++.....-- .+.. .....+-..+...|++++|...+++..+.--..+. ...+
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 3344456777777777766543200 0111 11112223345677788888777776652111111 2344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCC-CC-CHHH
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEK----GM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS----SENC-QP-DSWT 251 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~-~p-~~~~ 251 (533)
.+...+...|++++|...+++.... |. .....++..+...+...|++++|.+.+++... .+.. .+ ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 5555666778888887777766542 11 11123444555667777888888777766443 1210 01 2233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHH----
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEA--GFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFC---- 322 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~---- 322 (533)
+..+...+...|++++|...+.+.... ...+. ...+..+...+...|+.++|.+.+.+.....-.. ....+
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 445555666678888888777775442 11121 2334445556667788888877777764321100 00000
Q ss_pred -HHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHH----HHHHHHhhhhhccHHHHHHHHHhhhcc-------Cc-cchhh
Q 009506 323 -GCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV----VKLLLEEQDIEGDFKKEATELFNSISK-------DV-KKAYC 388 (533)
Q Consensus 323 -~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~~a~~~~~~~~~-------~~-~~~~~ 388 (533)
...+..+...|. +.+.+++............+ ...+...+...|+. ++|..++++... .. ...+.
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~-~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF-DEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 111223334555 66666655443322111111 13455556666765 677777665432 11 12255
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 389 NCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 389 ~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
..+..++.+.|+.++|...+.+..+..
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 666777888888888888888886554
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.36 E-value=8.9e-05 Score=68.88 Aligned_cols=186 Identities=12% Similarity=0.013 Sum_probs=119.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH-H
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNW-N 179 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~-~ 179 (533)
..+..+-.+...+.+.|++++|...|+++... .|+. .++..+..++.+.|++++|+..|+++.+..- .+.. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 35566777888888899999999999988764 2432 4667778888889999999999999886431 1111 2
Q ss_pred HHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHH
Q 009506 180 TYASLLRAYGRA--------RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 251 (533)
Q Consensus 180 ~~~~ll~~~~~~--------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~ 251 (533)
++..+..++.+. |+.++|.+.|+.+.+.... +...+..+..... .. .... ..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~~---------~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRLA---------GK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHHH---------HH
Confidence 344444555443 6677788888887765332 2222221111100 00 0000 01
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEAG--FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
...+...|.+.|++++|...+....+.. -+.....+..+..++.+.|+.++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1245567888888888888888877642 1223567888888888888888888888877654
No 86
>PLN02789 farnesyltranstransferase
Probab=98.36 E-value=0.00065 Score=65.55 Aligned_cols=182 Identities=7% Similarity=0.074 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
..++..+-..+...++.++|+.+++++.+. .|+ ..+|+.--.++...| +++++++.++++.+.. +-+..+|+..-
T Consensus 37 ~~a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~ 113 (320)
T PLN02789 37 REAMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRR 113 (320)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHH
Confidence 344555666667788889999999988873 343 345665555566666 5688888888887654 34455666555
Q ss_pred HHHHhcCCh--HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-
Q 009506 186 RAYGRARYG--EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR- 262 (533)
Q Consensus 186 ~~~~~~g~~--~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~- 262 (533)
..+.+.|.. ++++.+++++.+...+ +..+|+.....+.+.|+++++++.++++.+.+ ..|...|+.....+.+.
T Consensus 114 ~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 114 WLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRNNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCchhHHHHHHHHHHhcc
Confidence 555555552 5667777777776554 77777777777777788888888888877765 45666666655554443
Q ss_pred --CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 009506 263 --GKV----SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK 296 (533)
Q Consensus 263 --g~~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 296 (533)
|.. ++......++.... +-|...|+-+...+..
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKD 229 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhc
Confidence 222 23444443443322 2234455555555544
No 87
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.33 E-value=0.00012 Score=68.13 Aligned_cols=186 Identities=10% Similarity=-0.010 Sum_probs=126.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH--H
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-W---NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV--T 214 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~ 214 (533)
.....+..+...+...|++++|...|+++.... |+ . .++..+..+|.+.|++++|...++++.+....... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 345567778888889999999999999887643 33 2 46677888888999999999999998876432121 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 009506 215 LYNTLLAMCADV--------GYTDEAFEIFEDMKSSENCQPD-SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLF 285 (533)
Q Consensus 215 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 285 (533)
++..+...+.+. |+.++|.+.|+.+.... |+ ...+..+..... . ..... .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~a~~~~~~----~------~~~~~--------~ 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY---PNSEYAPDAKKRMDY----L------RNRLA--------G 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC---CCChhHHHHHHHHHH----H------HHHHH--------H
Confidence 344444555543 67888888888887653 33 223322211110 0 00000 1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CC-CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCC
Q 009506 286 VLTSLIQCYGKAQRTDDVVRALNRLPELGI-TP-DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 349 (533)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~ 349 (533)
....+...|.+.|++++|...|++..+..- .| ....+..+..++...|+ +++...++.+....|
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 122456678999999999999999887532 23 34578889999999999 999999988877654
No 88
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=0.00066 Score=64.84 Aligned_cols=268 Identities=10% Similarity=0.034 Sum_probs=181.6
Q ss_pred CCHHHHHHHHHHHHh--cCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHH
Q 009506 141 PNMITYNNLLDTMGR--AKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217 (533)
Q Consensus 141 pd~~~~~~li~~~~~--~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 217 (533)
|+..+....|.+++. .++...+...+-.+.. .-++-|+.....+.+.+...|+.++|+..|+.....++. ++....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMD 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHH
Confidence 333334444555443 4454555555444433 336678889999999999999999999999988765221 122222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
...-.+.+.|+++....+...+-... +-....|-.-.......++++.|+.+-.+-.+.. ..+...|..=-..+...
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhc
Confidence 22334567788888888887776532 2333344444455566778888888887766532 12344444444577889
Q ss_pred CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHH-HhhhhhccHHHHHHHH
Q 009506 298 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLL-EEQDIEGDFKKEATEL 375 (533)
Q Consensus 298 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~~a~~~ 375 (533)
|+.++|.-.|+..+... .-+...|..|+..|...+. .+|........+.-+.....+.+++ ..+.-.....++|..+
T Consensus 348 ~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred cchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 99999999999987642 2356799999999999999 9998888877776666666666664 3333333335889999
Q ss_pred Hhhhcc-Ccc-chhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 376 FNSISK-DVK-KAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 376 ~~~~~~-~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
+++--. .|+ ....+.+...|...|..+.++.+++.-+.
T Consensus 427 ~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 427 AEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 887543 333 44678889999999999999999997654
No 89
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.33 E-value=0.0019 Score=66.63 Aligned_cols=351 Identities=16% Similarity=0.161 Sum_probs=194.7
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 009506 97 TRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 176 (533)
Q Consensus 97 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 176 (533)
..++...+.-|+.+|..|.-+...+|+++.+.+.|++..-.- --....|+.+-..|..+|.-..|..+++.-....-.|
T Consensus 312 ~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p 390 (799)
T KOG4162|consen 312 RKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP 390 (799)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC
Confidence 344555567899999999999999999999999999876432 2355678888888888888778888777655332113
Q ss_pred -CHHHHHHHHHHHHh-cCChHHH--------------------------------------------------HHHHHHH
Q 009506 177 -NWNTYASLLRAYGR-ARYGEDT--------------------------------------------------LSVYREM 204 (533)
Q Consensus 177 -~~~~~~~ll~~~~~-~g~~~~a--------------------------------------------------~~~~~~m 204 (533)
|...+-..-+.|.+ .+.++++ .+.+++.
T Consensus 391 s~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~a 470 (799)
T KOG4162|consen 391 SDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEA 470 (799)
T ss_pred CcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHH
Confidence 23333222222322 2333333 3333333
Q ss_pred HHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCC
Q 009506 205 KEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-AGFEP 282 (533)
Q Consensus 205 ~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p 282 (533)
.+.+. .|++..|- ---|+..++++.|.+..++..+.+. ..+...|..|.-.+...+++.+|+.+.+...+ .|..-
T Consensus 471 v~~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~-~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~ 547 (799)
T KOG4162|consen 471 VQFDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNR-GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH 547 (799)
T ss_pred HhcCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 33222 22222222 2234455666777777766666543 56667777777777777777777777665433 22100
Q ss_pred --------------C----HHHHHHHHHHHH------hcC-----------------ChhHHHHHHHHh--------hhC
Q 009506 283 --------------N----LFVLTSLIQCYG------KAQ-----------------RTDDVVRALNRL--------PEL 313 (533)
Q Consensus 283 --------------~----~~~~~~li~~~~------~~g-----------------~~~~a~~~~~~m--------~~~ 313 (533)
| ..|...++..+- +.+ +..++.+..+.+ ...
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 0 011111111111 000 000111111100 000
Q ss_pred C---------CC--CCH------HHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHH
Q 009506 314 G---------IT--PDD------RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 375 (533)
Q Consensus 314 g---------~~--p~~------~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~ 375 (533)
| +. |+. ..|......+.+.+. +++.-.+.+..+..+-........+..+...|.+ ++|.+.
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~-~EA~~a 706 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQL-EEAKEA 706 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhh-HHHHHH
Confidence 0 11 111 122233334444555 6666666666666666666667777777777876 777776
Q ss_pred Hhhh-ccCc-cchhhHHHHHHHHhcCCHHHHHH--HHHHHHhccccCCccccCccceeecccccCh-hhHHHHHHHHHHH
Q 009506 376 FNSI-SKDV-KKAYCNCLIDLCVNLNLLENACK--LLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIWIND 450 (533)
Q Consensus 376 ~~~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~--l~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~ 450 (533)
|... ..+| ++....++...+.+.|+..-|.. ++..+.+.+. + +...|-.+-..+.. |....|.+.+
T Consensus 707 f~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp--~----n~eaW~~LG~v~k~~Gd~~~Aaecf--- 777 (799)
T KOG4162|consen 707 FLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP--L----NHEAWYYLGEVFKKLGDSKQAAECF--- 777 (799)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC--C----CHHHHHHHHHHHHHccchHHHHHHH---
Confidence 6554 3344 56688999999999998777777 8888877653 2 33456555555544 7777777776
Q ss_pred HHHHHHcCCCCC
Q 009506 451 LSKALESGEEFP 462 (533)
Q Consensus 451 l~~~~~~g~~~p 462 (533)
.-+++.-+..|
T Consensus 778 -~aa~qLe~S~P 788 (799)
T KOG4162|consen 778 -QAALQLEESNP 788 (799)
T ss_pred -HHHHhhccCCC
Confidence 33344444444
No 90
>PLN02789 farnesyltranstransferase
Probab=98.30 E-value=0.0018 Score=62.57 Aligned_cols=203 Identities=10% Similarity=0.055 Sum_probs=114.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH--HHH
Q 009506 156 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR-YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT--DEA 232 (533)
Q Consensus 156 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~--~~A 232 (533)
.++.++|+.+.+++++.. +-+..+|+..-.++.+.| .+++++..++++.+...+ +..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 355666777777666542 223344554444555555 467777777777666544 455566555555555542 556
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCh----hHHHH
Q 009506 233 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRT----DDVVR 305 (533)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~----~~a~~ 305 (533)
+++++.+.+.. +-|..+|+...-++.+.|+++++++.++++.+.+. -|...|+.....+.+. |.. ++.+.
T Consensus 128 l~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 128 LEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 66666666554 45667777766667777777777777777766542 3444555444443332 222 34555
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhcC----Ch-HHHHHHHHHHHhcCCChhHHHHHHHHhhhh
Q 009506 306 ALNRLPELGITPDDRFCGCLLNVMTQT----PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI 364 (533)
Q Consensus 306 ~~~~m~~~g~~p~~~~~~~ll~~~~~~----~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (533)
+..++++... -|...|+-+...+... +. .++..++..+...++.....+..|++.|..
T Consensus 205 y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 5555554431 1334555555555542 22 446666666666666666655666666654
No 91
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=0.00011 Score=66.22 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=102.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 191 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 191 (533)
..+-..+.-.|+-+....+....... ...|....+..+....+.|++.+|+..|++..... ++|..+|+.+--+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555555666666666666554332 23355555666777777777777777777766543 56677777777777777
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 271 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (533)
|++++|..-|.+..+.-.. +...+|.|.-.|.-.|+.+.|..++......+ .-|...-..+.......|++++|.++
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 7777777777766665333 45566666666667777777777777666654 34666666666677777777777776
Q ss_pred HHH
Q 009506 272 FNE 274 (533)
Q Consensus 272 ~~~ 274 (533)
-..
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 554
No 92
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.27 E-value=0.0053 Score=62.19 Aligned_cols=178 Identities=14% Similarity=0.129 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
+.+.|..+.-.+....++++|++.|......+ +-|...|.-+--.-++.|+++.......+..+.. +-....|..+..
T Consensus 74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Av 151 (700)
T KOG1156|consen 74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAV 151 (700)
T ss_pred cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHH
Confidence 45567777777777788888888888877643 2345566655555567777777777777776642 234466777888
Q ss_pred HHHhcCChHHHHHHHHHHHHcC-CCcCHHHHHHHHH------HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH-HHHHHH
Q 009506 187 AYGRARYGEDTLSVYREMKEKG-MQLSVTLYNTLLA------MCADVGYTDEAFEIFEDMKSSENCQPDSWTF-SSMITI 258 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~li~------~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~~li~~ 258 (533)
++.-.|+...|..++++..+.. -.|+...|..... ...+.|..++|++.+..-... ..|-..+ .+-...
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l 228 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADL 228 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHH
Confidence 8888899999999999888764 3456666655442 344566777777766554432 2233333 344566
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009506 259 CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 291 (533)
Q Consensus 259 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 291 (533)
+.+.+++++|..++..+.... ||..-|...+
T Consensus 229 ~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l 259 (700)
T KOG1156|consen 229 LMKLGQLEEAVKVYRRLLERN--PDNLDYYEGL 259 (700)
T ss_pred HHHHhhHHhHHHHHHHHHhhC--chhHHHHHHH
Confidence 677778888888887777653 6655554433
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.26 E-value=0.00024 Score=63.71 Aligned_cols=149 Identities=13% Similarity=0.174 Sum_probs=103.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 193 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 193 (533)
-+-.|.+.|+++.+..-.+.+.. |. . .+...++.++++..++...+.. +.|...|..|...|...|+
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC
Confidence 44567788888776555433321 11 0 1122556667777777766654 5677788888888888888
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAM-CADVGY--TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 270 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (533)
+++|...|++..+.... +...+..+..+ +...|+ .++|.+++++..+.+ +.+...+..+...+.+.|++++|..
T Consensus 89 ~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 89 YDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888776554 66777777765 356666 488888888887765 4567777888888888888888888
Q ss_pred HHHHHHHc
Q 009506 271 MFNEMLEA 278 (533)
Q Consensus 271 ~~~~m~~~ 278 (533)
.|+++.+.
T Consensus 166 ~~~~aL~l 173 (198)
T PRK10370 166 LWQKVLDL 173 (198)
T ss_pred HHHHHHhh
Confidence 88887764
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.23 E-value=0.0014 Score=73.98 Aligned_cols=266 Identities=12% Similarity=0.032 Sum_probs=164.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC--C----CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HHH
Q 009506 148 NLLDTMGRAKRPWQVKTIYKEMTDNG--L----SPN--WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS----VTL 215 (533)
Q Consensus 148 ~li~~~~~~g~~~~a~~~~~~m~~~g--~----~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~ 215 (533)
.....+...|+++++..++.+..+.- . .+. ......+-..+...|++++|...+++..+.-...+ ...
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 34445567889999999888775421 0 111 12222333455678999999999998776311112 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCC--C-CH
Q 009506 216 YNTLLAMCADVGYTDEAFEIFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE----AGFE--P-NL 284 (533)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~--p-~~ 284 (533)
.+.+...+...|++++|...+++.... |.......++..+...+...|++++|...+++..+ .+.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 556666778899999999999877542 21011234556677788899999999999888654 2221 1 22
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhC--CCCCC--HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCh---hHH-H
Q 009506 285 FVLTSLIQCYGKAQRTDDVVRALNRLPEL--GITPD--DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL---GYV-V 355 (533)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~--~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~---~~~-~ 355 (533)
..+..+...+...|++++|...+.+.... ...+. ...+..+.......|+ ++|...++......... ... .
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 34445556677789999999998887543 11122 2234445556667888 88888777765421111 111 1
Q ss_pred ---HHHHHhhhhhccHHHHHHHHHhhhccCc--cch----hhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 356 ---KLLLEEQDIEGDFKKEATELFNSISKDV--KKA----YCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 356 ---~~l~~~~~~~g~~~~~a~~~~~~~~~~~--~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
......+...|+. +.|...+....... ... .+..+..++...|+.++|..++++....
T Consensus 654 ~~~~~~~~~~~~~g~~-~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 654 NADKVRLIYWQMTGDK-EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHCCCH-HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1112333345655 77888776654321 111 1346777889999999999999988654
No 95
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.22 E-value=0.0007 Score=72.09 Aligned_cols=162 Identities=15% Similarity=0.096 Sum_probs=125.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHH
Q 009506 139 VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217 (533)
Q Consensus 139 ~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 217 (533)
...+...+-.|.....+.|.+++|..+++...+. .|| ......+...+.+.+++++|...+++....... +....+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 3456788888888888999999999999998875 354 566777888889999999999999999887655 677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
.+..++.+.|++++|.++|+++...+ +-+..++..+...+-..|+.++|...|+...+.- .+....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~----- 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV----- 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH-----
Confidence 88888889999999999999988743 4458888899999999999999999999887632 244556555443
Q ss_pred CChhHHHHHHHHhhh
Q 009506 298 QRTDDVVRALNRLPE 312 (533)
Q Consensus 298 g~~~~a~~~~~~m~~ 312 (533)
++..-..+++++.-
T Consensus 231 -~~~~~~~~~~~~~~ 244 (694)
T PRK15179 231 -DLNADLAALRRLGV 244 (694)
T ss_pred -HHHHHHHHHHHcCc
Confidence 33445556666643
No 96
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.0015 Score=58.92 Aligned_cols=179 Identities=14% Similarity=0.119 Sum_probs=113.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009506 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 243 (533)
Q Consensus 164 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 243 (533)
++.+.+.......|......-...|++.|++++|++...... +....-.=+..+.+..+.+-|.+.+++|.+
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~-- 165 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ-- 165 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 334444444334444444444556778888888887776521 222222233445666778888888888876
Q ss_pred CCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009506 244 NCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 319 (533)
Q Consensus 244 ~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 319 (533)
-.+..|.+-|..++.+ .+.+.+|.-+|++|-+ ...|+..+.+-+..++...|++++|..++++....... ++
T Consensus 166 --ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dp 241 (299)
T KOG3081|consen 166 --IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DP 241 (299)
T ss_pred --cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CH
Confidence 3455666655555543 4568888888888755 24688888888888888888888888888888766433 45
Q ss_pred HHHHHHHHHHhcCCh--HHHHHHHHHHHhcCCChhHH
Q 009506 320 RFCGCLLNVMTQTPK--EELGKLVECVEKSNSKLGYV 354 (533)
Q Consensus 320 ~~~~~ll~~~~~~~~--~~a~~~~~~~~~~~~~~~~~ 354 (533)
.+...++..-...|. +...+.+.++....|....+
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 555555555555555 55666777777777765543
No 97
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.22 E-value=0.0067 Score=60.18 Aligned_cols=128 Identities=16% Similarity=0.103 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCChhHHHHHHHHhhh
Q 009506 285 FVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQD 363 (533)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 363 (533)
.+|-.++..-.+..-+..|..+|.+..+.+..+ +..+.++++..++....+.|.++|+.=.+.-++...++...++.+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLS 446 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 356666777777888899999999999988887 6678899999988887799999999887777777777655555555
Q ss_pred hhccHHHHHHHHHhhhccC-----ccchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 364 IEGDFKKEATELFNSISKD-----VKKAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 364 ~~g~~~~~a~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
..++. ..+..+|++.... .....|+.+|+--..-|++..+.++-+++..
T Consensus 447 ~lNdd-~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 447 HLNDD-NNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HhCcc-hhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 55654 7899999987643 1345999999999999999999999888753
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.19 E-value=0.0004 Score=62.32 Aligned_cols=149 Identities=11% Similarity=0.128 Sum_probs=112.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 009506 150 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 229 (533)
Q Consensus 150 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 229 (533)
+..|...|+++.+....+.+.. |. ..|...++.+++...++...+.... |...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3467888888887555433221 11 0122356667777778877776554 888999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009506 230 DEAFEIFEDMKSSENCQPDSWTFSSMITI-CSCRGK--VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 306 (533)
Q Consensus 230 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 306 (533)
++|...|++..+.. +.+...+..+..+ |...|+ .++|.+++++..+.+ +-+...+..+...+.+.|++++|...
T Consensus 90 ~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988865 4577888888776 467777 599999999988864 23677888888899999999999999
Q ss_pred HHHhhhCC
Q 009506 307 LNRLPELG 314 (533)
Q Consensus 307 ~~~m~~~g 314 (533)
|+++.+..
T Consensus 167 ~~~aL~l~ 174 (198)
T PRK10370 167 WQKVLDLN 174 (198)
T ss_pred HHHHHhhC
Confidence 99998763
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0007 Score=61.90 Aligned_cols=193 Identities=11% Similarity=0.091 Sum_probs=103.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL-LRAYG 189 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~ 189 (533)
+.+.|..+.+..++.+|++++..-.++. +.+......|..+|....++..|...|+++... .|...-|... ...+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5556666667777888888777766543 226666777777777777888888888777653 3554444322 33445
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLA--MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 267 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (533)
+.+.+.+|+.+...|.+. ++...-..-+. .....+++..+..++++....| +..+.+.......+.|+++.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHH
Confidence 566777777777766543 11111111111 1223455555555555554322 22233333333445566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 268 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 268 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
|.+-|+...+-+-.-....|+.-+..| +.|+.+.|++...+++++|
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhh
Confidence 666666555532222344455444333 3455566666655555544
No 100
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=4e-06 Score=51.64 Aligned_cols=33 Identities=30% Similarity=0.609 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN 142 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 142 (533)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
No 101
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.5e-06 Score=51.41 Aligned_cols=33 Identities=36% Similarity=0.688 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 177 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 177 (533)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777776
No 102
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=0.0062 Score=61.08 Aligned_cols=48 Identities=15% Similarity=0.150 Sum_probs=22.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 155 RAKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+.++.++|+..++ |..++ ..+...-...+.+.|++++|..+|+.+.+.
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4455555555544 22222 223333344455556666666666655443
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.11 E-value=0.00032 Score=59.47 Aligned_cols=88 Identities=8% Similarity=-0.061 Sum_probs=35.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 009506 151 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD 230 (533)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 230 (533)
.++...|++++|...|+...... +.+...|..+..++.+.|++++|...|++..+.... +...+..+..++...|+++
T Consensus 32 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~~~ 109 (144)
T PRK15359 32 YASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGEPG 109 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCCHH
Confidence 33334444444444444443322 223333444444444444444444444444433221 3333444444444444444
Q ss_pred HHHHHHHHHH
Q 009506 231 EAFEIFEDMK 240 (533)
Q Consensus 231 ~A~~~~~~m~ 240 (533)
+|.+.|+...
T Consensus 110 eAi~~~~~Al 119 (144)
T PRK15359 110 LAREAFQTAI 119 (144)
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 104
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=4.2e-06 Score=51.22 Aligned_cols=29 Identities=31% Similarity=0.590 Sum_probs=11.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGL 174 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 174 (533)
||.+|.+|++.|+++.|.++|++|.+.|+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33333333333333333333333333333
No 105
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=4.9e-06 Score=50.92 Aligned_cols=33 Identities=36% Similarity=0.749 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP 141 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 141 (533)
.+|+.+|++|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999987
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.08 E-value=0.0002 Score=60.63 Aligned_cols=110 Identities=6% Similarity=-0.100 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 009506 104 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS 183 (533)
Q Consensus 104 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 183 (533)
+..|+..+..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|+..|++..+.. +.+..++..
T Consensus 20 l~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~ 97 (144)
T PRK15359 20 LSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQ 97 (144)
T ss_pred HHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHH
Confidence 34455556678888899999999999999998753 3478889999999999999999999999999864 567889999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHH
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLY 216 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~ 216 (533)
+..++.+.|++++|...|+...+.... +...|
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~~p~-~~~~~ 129 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKMSYA-DASWS 129 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 999999999999999999999886433 33444
No 107
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.08 E-value=0.0014 Score=69.91 Aligned_cols=183 Identities=10% Similarity=0.061 Sum_probs=142.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 009506 104 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 182 (533)
Q Consensus 104 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 182 (533)
+..++..+-.|.....+.|.+++|..+++...+. .|| ......+...+.+.+++++|+..+++..... +-+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 3456888999999999999999999999999984 565 4566778889999999999999999999865 34567788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 262 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (533)
.+..++.+.|++++|..+|++....+.. +..++..+...+.+.|+.++|...|+...+.. .+....|+..+.-
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~---- 231 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI--GDGARKLTRRLVD---- 231 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--CcchHHHHHHHHH----
Confidence 8888999999999999999999985433 58889999999999999999999999988764 4566666665533
Q ss_pred CChHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcC
Q 009506 263 GKVSEAEAMFNEMLE----AGFEPNLFVLTSLIQCYGKAQ 298 (533)
Q Consensus 263 g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~~~~~g 298 (533)
+..-...++.+.- .|......+...+|.-|.+..
T Consensus 232 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 232 --LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred --HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 3344455555543 233444556667777776543
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.07 E-value=0.00035 Score=71.39 Aligned_cols=213 Identities=13% Similarity=0.074 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 189 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 189 (533)
.=-.+...+...|-...|+.+|+++. .|.-+|.+|...|+..+|..+..+-.++ +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456667778888888888888775 4777888888888888888888877773 588888888888777
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 269 (533)
.-.-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+.+ +--..+|-.+..+..+.++++.|.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHH
Confidence 766777777777654332 11111112233577777777777665544 345566777777777777777777
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 009506 270 AMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 345 (533)
Q Consensus 270 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~ 345 (533)
+.|..-..- .|| ...||.+-.+|.+.++-.+|...+.+..+.+.. +-..|...+....+-|. ++|.+.+..+.
T Consensus 540 ~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 540 KAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 777765542 243 567777777777777777777777777666522 33344444555556666 66666666544
No 109
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.00067 Score=63.44 Aligned_cols=121 Identities=15% Similarity=0.090 Sum_probs=69.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-----------
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA----------- 182 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~----------- 182 (533)
+..++.+.|++++|+..|+-+.+. -.++...+-.|.-++.-.|.+.+|..+-.... -++..-.
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklnd 136 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLND 136 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCc
Confidence 445667899999999999988764 34566666666666666677777665543221 1111111
Q ss_pred -------------------HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhC
Q 009506 183 -------------------SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL-AMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 183 -------------------~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
+|....-..-.+.+|++++.+....+ |.-...|.-+ -+|.+..-++.+.++++-..+.
T Consensus 137 Ek~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 137 EKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 12222222234667777777766542 3344444333 3456667777777777655543
No 110
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.06 E-value=0.0025 Score=62.57 Aligned_cols=184 Identities=14% Similarity=0.012 Sum_probs=131.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
.|+...+...+.+......-..+-.++.+-.+. .-...-|..-+ .+...|.+++|+..++.+... .+-|.......
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHH
Confidence 566777777777655544444444444333321 12223343333 345688899999999998865 24455666667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
...+.+.++.++|.+.++.+...... .....-.+..+|.+.|+..+|+.++++..... +-|...|..|..+|...|+
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFND--PEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--CCCchHHHHHHHHHHHhCc
Confidence 78889999999999999999887433 25666677888999999999999998887765 6788999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
..++..-..+ +|...|+++.|...+....+.
T Consensus 424 ~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 424 RAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred hHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 8888776655 345678888888888887665
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.04 E-value=0.0017 Score=70.14 Aligned_cols=225 Identities=12% Similarity=0.089 Sum_probs=138.4
Q ss_pred HHHHhhcCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChhHHHHH--------
Q 009506 96 DTRARNEKWRI-DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT-YNNLLDTMGRAKRPWQVKTI-------- 165 (533)
Q Consensus 96 ~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-~~~li~~~~~~g~~~~a~~~-------- 165 (533)
+.+..-..+.| +...+..||..|...+++++|.++.+...+. .|+... |-.+...+.+.++..++..+
T Consensus 18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~ 95 (906)
T PRK14720 18 WTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQ 95 (906)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhhhhhhhccc
Confidence 33444445544 6777999999999999999999999977663 354433 22222245555555544433
Q ss_pred ----------HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009506 166 ----------YKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 235 (533)
Q Consensus 166 ----------~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (533)
...|... .-+...+-.|..+|-+.|+.+++..+++++.+.... |..+.|.+...|... ++++|+++
T Consensus 96 ~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 96 NLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHH
Confidence 2233221 123356677788888888888898888888888744 788888888888888 88888888
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHH-----HhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009506 236 FEDMKSSENCQPDSWTFSSMITIC-----SCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYGKAQRTDDVVRALNR 309 (533)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 309 (533)
+.+...... +..-|+.+.... ..-.+++.-.++.+.+... |...-+.++-.+-..|-..++++++..+++.
T Consensus 172 ~~KAV~~~i---~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 172 LKKAIYRFI---KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred HHHHHHHHH---hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 877665311 111222222111 1112333334444443332 3334455566666777788888888888888
Q ss_pred hhhCCCCCCHHHHHHHHHHHh
Q 009506 310 LPELGITPDDRFCGCLLNVMT 330 (533)
Q Consensus 310 m~~~g~~p~~~~~~~ll~~~~ 330 (533)
+.+..-. |.....-++..|.
T Consensus 249 iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 249 ILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHhcCCc-chhhHHHHHHHHH
Confidence 8775433 3345555555555
No 112
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.0032 Score=66.63 Aligned_cols=267 Identities=14% Similarity=0.063 Sum_probs=159.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
+....+.||.- -+.+++|.++-++.. ....|..+..+-.+.|...+|++-|-+. -|+..|.-+++
T Consensus 1077 n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~ 1141 (1666)
T KOG0985|consen 1077 NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVID 1141 (1666)
T ss_pred cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHH
Confidence 44444444443 467777777766653 3456888888888888888887666332 36677888888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
...+.|.+++-.+.+...+++.-+|.+. +.||-+|++.++..+.++++. -||......+.+-|...|.++
T Consensus 1142 ~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~--------gpN~A~i~~vGdrcf~~~~y~ 1211 (1666)
T KOG0985|consen 1142 VASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA--------GPNVANIQQVGDRCFEEKMYE 1211 (1666)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc--------CCCchhHHHHhHHHhhhhhhH
Confidence 8888888888888887777766655544 467888888888877766642 466666666666666666666
Q ss_pred HHHHHHHHHHHc--------------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009506 267 EAEAMFNEMLEA--------------------GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 326 (533)
Q Consensus 267 ~A~~~~~~m~~~--------------------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 326 (533)
.|.-+|...... .-.-+..||-.+-.+|...+.+.-| +|.-.++.....-...|+
T Consensus 1212 aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli 1286 (1666)
T KOG0985|consen 1212 AAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELI 1286 (1666)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHH
Confidence 666665443110 0012344454444444444333222 222333444455567778
Q ss_pred HHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhh--ccHHHHHHHHHhh-hccC------ccchhhHHHHHHHH
Q 009506 327 NVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIE--GDFKKEATELFNS-ISKD------VKKAYCNCLIDLCV 396 (533)
Q Consensus 327 ~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~~a~~~~~~-~~~~------~~~~~~~~li~~~~ 396 (533)
..|...|. ++...+++.........-.+.+-|...|.+- ..+ .+-+++|-. +... .....|+.+.-.|.
T Consensus 1287 ~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskykp~km-~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~ 1365 (1666)
T KOG0985|consen 1287 EYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYKPEKM-MEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYD 1365 (1666)
T ss_pred HHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887 7777777765544444444445555555543 222 223334332 2211 12336777777777
Q ss_pred hcCCHHHH
Q 009506 397 NLNLLENA 404 (533)
Q Consensus 397 ~~g~~~~A 404 (533)
+-..++.|
T Consensus 1366 ~y~eyDNA 1373 (1666)
T KOG0985|consen 1366 KYEEYDNA 1373 (1666)
T ss_pred hhhhhhHH
Confidence 76666665
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=0.0002 Score=73.05 Aligned_cols=193 Identities=13% Similarity=0.071 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
...|.-+|.+|...|+..+|..+..+..++ +||...|..+.+.....--+++|.++++....+ .-..+...
T Consensus 424 lemw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~ 494 (777)
T KOG1128|consen 424 LEMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALL 494 (777)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccc
Confidence 456889999999999999999999887773 689999999999988888899999999876543 11122222
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 267 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (533)
..+.+++.++.+.|+.-.+... .-..+|-.+..+..+.+++..|.+.|....... +.+...||++-.+|.+.|+-.+
T Consensus 495 ~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~r 571 (777)
T KOG1128|consen 495 ILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKR 571 (777)
T ss_pred cccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHH
Confidence 2336899999999987666532 257788888889999999999999999988753 4467889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 268 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 268 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
|...+.+..+.+ .-+...|...+-...+.|.+++|++.+.++.+.
T Consensus 572 a~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 572 AFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999999999877 455666777777778999999999999988653
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.02 E-value=0.002 Score=58.24 Aligned_cols=158 Identities=13% Similarity=0.041 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009506 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226 (533)
Q Consensus 147 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 226 (533)
..+-..+.-.|+-+....+....... ..-|....+.+++...+.|++..|...|.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 33444555556655555555443321 12344455556666666677777776666665543 23666666666666677
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009506 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 306 (533)
Q Consensus 227 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 306 (533)
|+.++|..-|.+..+.. .-+...++.|.-.|.-.|+++.|..++......+ .-|...-..|.-.....|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELA--PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 77776666666665543 2345556666666666666666666666655543 22455555555566666666666665
Q ss_pred HHH
Q 009506 307 LNR 309 (533)
Q Consensus 307 ~~~ 309 (533)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 443
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.02 E-value=0.00031 Score=58.83 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=41.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 261 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (533)
..+...+.+.|++++|.+.|+.+...+.. +...|..+...+.+.|++++|.++|+...+.+ +.+...+..+...|..
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHH
Confidence 33344444444444444444444443222 34444444444444444444444444444332 2334444444444444
Q ss_pred cCChHHHHHHHHHHHH
Q 009506 262 RGKVSEAEAMFNEMLE 277 (533)
Q Consensus 262 ~g~~~~A~~~~~~m~~ 277 (533)
.|++++|.+.|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444443
No 116
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.0035 Score=58.81 Aligned_cols=293 Identities=14% Similarity=0.088 Sum_probs=180.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLD-TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
-+|.+...-.-.+.+|+++|.+.... .|+-...|.-+. +|.+..-++-+.++++--++. ++-+....|....-..|
T Consensus 155 LSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fR 231 (557)
T KOG3785|consen 155 LSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFR 231 (557)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhh
Confidence 34555555556899999999998864 366666666554 456777788888888877754 22333444433322222
Q ss_pred --cCCh---------------------------------HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009506 191 --ARYG---------------------------------EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 235 (533)
Q Consensus 191 --~g~~---------------------------------~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (533)
.|+. +.|++++--+.+. -...--.|+--|.+.+++.+|..+
T Consensus 232 l~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L 307 (557)
T KOG3785|consen 232 LINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISL 307 (557)
T ss_pred hhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHH
Confidence 1222 2222222222111 111222344557889999999998
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHH
Q 009506 236 FEDMKSSENCQPDSWTFSSMITICSCRG-------KVSEAEAMFNEMLEAGFEPNL-FVLTSLIQCYGKAQRTDDVVRAL 307 (533)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~ 307 (533)
.+++.- .+..-|-.-.-.++..| .+.-|.+.|+..-+.+..-|. ..--++..++.-..++|+++-++
T Consensus 308 ~Kdl~P-----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl 382 (557)
T KOG3785|consen 308 CKDLDP-----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL 382 (557)
T ss_pred HhhcCC-----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 877642 22333322222233333 356677777665555444332 23445666666677888888888
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHH-HHHHHhhhhhccHHHHHHHHHhhhccCccc
Q 009506 308 NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISKDVKK 385 (533)
Q Consensus 308 ~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~ 385 (533)
+.+...= ..|....-.+..+.+..|. .+++++|-.+........... .+|.++|..++.- +-|+++|-++....+.
T Consensus 383 nSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP-~lAW~~~lk~~t~~e~ 460 (557)
T KOG3785|consen 383 NSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKP-QLAWDMMLKTNTPSER 460 (557)
T ss_pred HHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCc-hHHHHHHHhcCCchhH
Confidence 8877653 3344433448888888898 999999887765554444444 8889999988865 8899999888765555
Q ss_pred hh-hHHHHHHHHhcCCHHHHHHHHHHHHhccccC
Q 009506 386 AY-CNCLIDLCVNLNLLENACKLLELGLTLEVYT 418 (533)
Q Consensus 386 ~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~ 418 (533)
.+ ...+..-|.+++.+=-|-+.|+.+...+..|
T Consensus 461 fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 461 FSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 43 4555667999999888888888776555433
No 117
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=0.0011 Score=59.88 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=54.4
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cC
Q 009506 152 TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VG 227 (533)
Q Consensus 152 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g 227 (533)
.|...|++++|++..+.. -+......=+..+.|..+++-|.+.++.|.+.. +..|.+.|..++.+ .+
T Consensus 117 i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGE 187 (299)
T ss_pred HhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccch
Confidence 344555555555554431 111222222333444455555555555555432 33344433333332 23
Q ss_pred CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 228 YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 228 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
.+.+|.-+|++|.++- .|+..+.+-...++...|++++|..++++....
T Consensus 188 k~qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred hhhhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4555555555555442 455555555555555555555555555555443
No 118
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.99 E-value=0.00016 Score=63.44 Aligned_cols=91 Identities=22% Similarity=0.372 Sum_probs=68.1
Q ss_pred CCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------------hhH
Q 009506 103 KWRIDPNAFSTLIKLYGTA-----GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR----------------PWQ 161 (533)
Q Consensus 103 g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~----------------~~~ 161 (533)
+-..|-.+|..+|+.|.+. |..+=....+..|.+.|+..|..+|+.||+.+-+..- -+-
T Consensus 42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c 121 (228)
T PF06239_consen 42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQEC 121 (228)
T ss_pred hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHH
Confidence 3467889999999999764 7788888888999999999999999999998865221 233
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 193 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 193 (533)
|++++++|...|+-||..|+..|++.+++.+.
T Consensus 122 ~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 122 AIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 66666666666666666666666666655443
No 119
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.99 E-value=0.00098 Score=67.96 Aligned_cols=191 Identities=18% Similarity=0.242 Sum_probs=116.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
+.+..+...+.+|+.+++.+.+... -..-|..+.+.|+..|+++.|+++|-+.. .++-.|.+|.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhcccc
Confidence 4455667778888888887776532 23346667778888889888888885432 25567888889999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 343 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~ 343 (533)
|++|.++-.+. .|-......|.+-..-+.+.|++.+|.++|-.+.+ |+. .|..|-+.|. ++..++.+.
T Consensus 807 w~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHH
Confidence 98888876553 33334556666666677788888888887765432 332 3556666666 555554442
Q ss_pred HHhcCCChhHHH-HHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHH
Q 009506 344 VEKSNSKLGYVV-KLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLL 408 (533)
Q Consensus 344 ~~~~~~~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 408 (533)
..++.-.-. ..+...+...|++ +.|..-|-+.. -|.+-++.|...+.+++|.++-
T Consensus 876 ---~h~d~l~dt~~~f~~e~e~~g~l-kaae~~flea~------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 876 ---HHGDHLHDTHKHFAKELEAEGDL-KAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred ---hChhhhhHHHHHHHHHHHhccCh-hHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHH
Confidence 222222222 4445555555655 55555544333 2445555555566666555443
No 120
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.96 E-value=0.0002 Score=55.76 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=64.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHHCCCCCCHHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNMITYNNLLDTMGRAKR--------PWQVKTIYKEMTDNGLSPNWNTY 181 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~~~~~li~~~~~~g~--------~~~a~~~~~~m~~~g~~p~~~~~ 181 (533)
-...|.-+...+++.....+|+.+++.|+ .|++.+||.++.+.++... .-..+.+|+.|+..+++|+..||
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677999999999999999999 8999999999998876532 33477888888888888888888
Q ss_pred HHHHHHHHh
Q 009506 182 ASLLRAYGR 190 (533)
Q Consensus 182 ~~ll~~~~~ 190 (533)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888887754
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=0.00044 Score=57.90 Aligned_cols=118 Identities=12% Similarity=0.128 Sum_probs=89.4
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 200 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 200 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
.|+........ +......+...+...|++++|.+.|+.+...+ +.+...|..+...|.+.|++++|..+++...+.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34445444322 44556667778888999999999999987765 5578888889999999999999999999877654
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHH
Q 009506 280 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG 323 (533)
Q Consensus 280 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 323 (533)
+.+...+..+...|...|+.++|...|++..+.. |+...+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 122 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPEYS 122 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchHH
Confidence 4456777778888999999999999999887753 5544433
No 122
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.93 E-value=0.04 Score=58.14 Aligned_cols=199 Identities=14% Similarity=0.154 Sum_probs=119.0
Q ss_pred HHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 111 FSTLIKLY--GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188 (533)
Q Consensus 111 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 188 (533)
|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|-+.++.++|..+|++.... -|+......+..+|
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmay 120 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAY 120 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHH
Confidence 33344444 4677788888777777655444 7777777777788888888888888877764 36677777777777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHhCCCCCC-CHHHHHHHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG----------YTDEAFEIFEDMKSSENCQP-DSWTFSSMIT 257 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~ 257 (533)
.|.+.+.+-.++--+|-+. +.-+...+-++++.+...- -..-|.+.++.+.+.++ +- ...-.-.-..
T Consensus 121 vR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccchHHHHHHHHH
Confidence 7777776655544444432 2224555555555554421 12345556666655432 11 1111222233
Q ss_pred HHHhcCChHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 258 ICSCRGKVSEAEAMFN-EMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
..-..|++++|+.++. ...+.-...+...-+.-++.+...+++.+..++-.++.+.|
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 3445677888888773 33333333344444556667777788888888777777766
No 123
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00078 Score=67.15 Aligned_cols=220 Identities=17% Similarity=0.141 Sum_probs=129.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009506 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 302 (533)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 302 (533)
+.+.|++.+|.-.|+...+.. +-+...|.-|...-...++-..|+..+.+..+.. +-|....-.|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 345566666666666655543 3455666666666666666666666666655532 1234555555566666666666
Q ss_pred HHHHHHHhhhCCCC--------CCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCC--ChhHHHHHHHHhhhhhccHHHH
Q 009506 303 VVRALNRLPELGIT--------PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS--KLGYVVKLLLEEQDIEGDFKKE 371 (533)
Q Consensus 303 a~~~~~~m~~~g~~--------p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~~ 371 (533)
|+..+++......+ ++...-.. ..+..... ....++|-.+....+ ....+-..|+..|...|++ ++
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef-dr 448 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF-DR 448 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH-HH
Confidence 66666655332100 00000000 01111111 233333333333333 1222235666666666766 88
Q ss_pred HHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCccccCccceeecccccChhhHHHHHHHHHH
Q 009506 372 ATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSLGAALTALHIWIN 449 (533)
Q Consensus 372 a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~g~~~~a~~~~~~ 449 (533)
|.+.|+..-. +.|...||-|...++...+.++|+.-|++.++. +|+ |..+.|++-|.++-.|...+|+..++.
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~---yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPG---YVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCC---eeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 8888887542 336678999999999999999999999987764 454 345568888889999999999999888
Q ss_pred HHHH
Q 009506 450 DLSK 453 (533)
Q Consensus 450 ~l~~ 453 (533)
.|.-
T Consensus 524 AL~m 527 (579)
T KOG1125|consen 524 ALSM 527 (579)
T ss_pred HHHh
Confidence 8763
No 124
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0023 Score=58.62 Aligned_cols=284 Identities=15% Similarity=0.100 Sum_probs=160.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009506 121 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 200 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 200 (533)
.+++..+..++++.... -+..+.+...-...+.|++++|.+-|+...+-+---....||..+.-| +.|+.+.|++.
T Consensus 125 e~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~ 200 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKH 200 (459)
T ss_pred cccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHH
Confidence 45555666666655432 133333334444568899999999999888744333456788776665 45888999999
Q ss_pred HHHHHHcCCCc-------------CH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH
Q 009506 201 YREMKEKGMQL-------------SV---------------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 252 (533)
Q Consensus 201 ~~~m~~~g~~~-------------~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 252 (533)
..+++++|++- |+ ..+|.-...+.+.|+++.|.+-+-+|.-+..-..|.+|.
T Consensus 201 iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 201 ISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred HHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 99998877631 21 123333344567889999999988886554335677877
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC-CCHHHHHHHHHHHhc
Q 009506 253 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT-PDDRFCGCLLNVMTQ 331 (533)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~ 331 (533)
..+.-.- ..+++.+..+-+.-+.+.. +-...||..++-.||++.-++.|-.++.+=...-.+ .+...|+ |+.++..
T Consensus 281 HN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt 357 (459)
T KOG4340|consen 281 HNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALIT 357 (459)
T ss_pred hHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHh
Confidence 6554322 2344444444445555543 234678888999999999999999888765433221 2334444 5565554
Q ss_pred CCh--HHHHHHHHHHHhcCCChhHHHHHHHHhhhhh-ccHHHHHHHHHhhhccC--ccchhhHHHHHHHHhcCCHHHHHH
Q 009506 332 TPK--EELGKLVECVEKSNSKLGYVVKLLLEEQDIE-GDFKKEATELFNSISKD--VKKAYCNCLIDLCVNLNLLENACK 406 (533)
Q Consensus 332 ~~~--~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~a~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~ 406 (533)
+.- +++.+-++.+.+.-.+--. ..-+...... .+...+.+..++..... .-.++.-+-...|++..++..+.+
T Consensus 358 ~qT~pEea~KKL~~La~~l~~kLR--klAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk 435 (459)
T KOG4340|consen 358 CQTAPEEAFKKLDGLAGMLTEKLR--KLAIQVQEARHNRDDEAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEK 435 (459)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHH
Confidence 443 7776655543321100000 0001100000 00001222222222210 012234455567888999999999
Q ss_pred HHHHHHh
Q 009506 407 LLELGLT 413 (533)
Q Consensus 407 l~~~m~~ 413 (533)
+|+.-.+
T Consensus 436 ~Fr~Sve 442 (459)
T KOG4340|consen 436 IFRKSVE 442 (459)
T ss_pred HHHHHHh
Confidence 9986543
No 125
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.004 Score=64.57 Aligned_cols=94 Identities=18% Similarity=0.240 Sum_probs=61.0
Q ss_pred CCHHHHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCC--------
Q 009506 106 IDPNAFSTLIK--LYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD-NGL-------- 174 (533)
Q Consensus 106 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~-------- 174 (533)
-|..|-..+++ .|.-.|+.+.|.+-.+-++.. .+|..|.+.|.+..+++-|.-.+..|.. +|.
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 37777777776 467789999998888888763 3688888888888888887777766642 121
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 175 SPNWNTYASLLRAYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 175 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 206 (533)
.++ .+=..+.-.....|.+++|+.+|.+-++
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR 828 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR 828 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 121 2222222233455667777777666544
No 126
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.91 E-value=0.0017 Score=64.81 Aligned_cols=216 Identities=11% Similarity=0.025 Sum_probs=92.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
.+.|++.+|.-.|+..+..... +...|--|.......++-..|+..+++..+.. +-|....-.|.-.|...|.-..|
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld--P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD--PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC--CccHHHHHHHHHHHhhhhhHHHH
Confidence 3445555555555555544333 44555555555555555555555555555432 23444455555555555555555
Q ss_pred HHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCChhHHHHHHHHh-hhCCCCCCHHHHHHHHHHHhcCCh-HHHH
Q 009506 269 EAMFNEMLEAGFE--------PNLFVLTSLIQCYGKAQRTDDVVRALNRL-PELGITPDDRFCGCLLNVMTQTPK-EELG 338 (533)
Q Consensus 269 ~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~~~-~~a~ 338 (533)
.+.++.......+ ++...-.. ..+.....+....++|-++ .+.+..+|..+...|--.|.-.|. +.+.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 5555544322100 00000000 1111112222333333333 222333444444444444444444 5555
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Ccc-chhhHHHHHHHHhcCCHHHHHHHHHH
Q 009506 339 KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVK-KAYCNCLIDLCVNLNLLENACKLLEL 410 (533)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~~-~~~~~~li~~~~~~g~~~~A~~l~~~ 410 (533)
..|+.+...+|+....++-|+..++.... ..+|..-+++... .|. +.++-.|.-.|...|.+++|.+.|-.
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNR-SEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcc-cHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 55555555555555555555444443222 2444444444321 221 22333344445555555555444433
No 127
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.91 E-value=0.00046 Score=68.03 Aligned_cols=126 Identities=15% Similarity=0.176 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 258 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (533)
.....|++.+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +.|......-.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 344566777777899999999999999884 44 34457788888888999999998888654 4577777777888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 259 CSCRGKVSEAEAMFNEMLEAGFEPNL-FVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 259 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
|.+.++++.|.++.+++.+. .|+. .+|..|..+|.+.|+++.|+..++-+.-
T Consensus 244 Ll~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 99999999999999998875 3664 5899999999999999999999988753
No 128
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=0.0012 Score=68.18 Aligned_cols=228 Identities=10% Similarity=0.078 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-C--------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-G--------VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 177 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 177 (533)
+..+|..|.++|.+.++++-|.-.+-.|... | -.++ .+=....-.....|..++|+.+|.+-+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 3445666666666666555555555544321 1 1111 1111122223345555666666555443
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
|..|=+.|-..|.+++|.++-+.=-+..+ ..||..-..-+-..++.+.|++.|++... +--..+..|.
T Consensus 829 ---~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~-----hafev~rmL~- 896 (1416)
T KOG3617|consen 829 ---YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGV-----HAFEVFRMLK- 896 (1416)
T ss_pred ---HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCC-----hHHHHHHHHH-
Confidence 22333444455666666555443211111 12344444444445556666655554321 1111111110
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HH
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EE 336 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~ 336 (533)
.++...++..+.+ .|...|....+.+-..|+.|.|+.+|...++ |-++++..+-.|+ ++
T Consensus 897 -----e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 897 -----EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDK 956 (1416)
T ss_pred -----hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchH
Confidence 0111111122221 2334455555555566777777776666543 2334455555555 55
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh
Q 009506 337 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
|.++.++- +. -..-..|.+.|...|+. .+|..+|.+.
T Consensus 957 Aa~iA~es---gd--~AAcYhlaR~YEn~g~v-~~Av~FfTrA 993 (1416)
T KOG3617|consen 957 AARIAEES---GD--KAACYHLARMYENDGDV-VKAVKFFTRA 993 (1416)
T ss_pred HHHHHHhc---cc--HHHHHHHHHHhhhhHHH-HHHHHHHHHH
Confidence 55554431 11 11124566777777765 6777776654
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.89 E-value=0.00055 Score=67.50 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=85.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 225 (533)
-..|+..+...++++.|+.+|+++.+.. |+. ...+++.+...++-.+|.+++.+..+.... +....+.-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3445555566677777888887777654 443 344667777777777777777777754332 56666666667778
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 226 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
.++++.|+++.+++.... +-+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~ls--P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS--PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888877753 3345588888888888888888888877765
No 130
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.87 E-value=0.024 Score=53.18 Aligned_cols=298 Identities=12% Similarity=0.074 Sum_probs=199.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH---HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL---DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 182 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 182 (533)
-++.-.--+-+.+...|++.+|+.-|....+ -|...|.++. ..|...|+-..|+.=|.+.++. .||-..-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~AR 109 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAAR 109 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHH
Confidence 3455566678888889999999999998876 4555666554 4577788888888888888874 56643211
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHHcCCCc----CH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 009506 183 -SLLRAYGRARYGEDTLSVYREMKEKGMQL----SV----------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP 247 (533)
Q Consensus 183 -~ll~~~~~~g~~~~a~~~~~~m~~~g~~~----~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p 247 (533)
---..+.+.|.++.|..=|+...+....- +. ......+..+.-.|+...|++....+.+.. +.
T Consensus 110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~W 187 (504)
T KOG0624|consen 110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PW 187 (504)
T ss_pred HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cc
Confidence 11234678999999999999988764311 11 112233455667899999999999988754 56
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009506 248 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 327 (533)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 327 (533)
|...|..-..+|...|++..|..=++...+.. .-+..++-.+-..+...|+.+.++...++..+. .||...+-....
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK 264 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK 264 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH
Confidence 88889999999999999999988777765432 346677777888889999999999999998764 477653322222
Q ss_pred HHhcC-------------Ch-HHHHHHHHHHHhcCCChhHHH----HHHHHhhhhhccHHHHHHHHHhhh-ccCc-cchh
Q 009506 328 VMTQT-------------PK-EELGKLVECVEKSNSKLGYVV----KLLLEEQDIEGDFKKEATELFNSI-SKDV-KKAY 387 (533)
Q Consensus 328 ~~~~~-------------~~-~~a~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~~a~~~~~~~-~~~~-~~~~ 387 (533)
-+-+. ++ .++..-.+.+.+.+|....+. ..+..++...|+. .+|++.-.+. ..+| |+.+
T Consensus 265 klkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~-~eAiqqC~evL~~d~~dv~~ 343 (504)
T KOG0624|consen 265 KLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQF-GEAIQQCKEVLDIDPDDVQV 343 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCH-HHHHHHHHHHHhcCchHHHH
Confidence 22211 11 222222333445566533221 4445566666766 5666554443 3334 4667
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 388 CNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 388 ~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
+---.++|.-...++.|+.=|+...+..
T Consensus 344 l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 344 LCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 7777788888888888888888776543
No 131
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.87 E-value=0.00018 Score=71.11 Aligned_cols=126 Identities=11% Similarity=0.048 Sum_probs=98.4
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 009506 101 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 178 (533)
Q Consensus 101 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 178 (533)
..+...+......+++.+....+++.+..++-+.+.. ....-..|.+++|+.|.+.|..++++.+++.=...|+-||.
T Consensus 59 ~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 59 ERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred hcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 3445567777777888887778888888888887754 22222345568899999999999999998888888999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 226 (533)
.++|.||+.+.+.|++..|.++..+|...+.-.+..|+...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999888888776666777777777776665
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.021 Score=51.51 Aligned_cols=83 Identities=23% Similarity=0.270 Sum_probs=37.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009506 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 226 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 305 (533)
.|++++|+++++.+.+.+ +-|.+++---+.+.-..|+--+|.+-+....+. +.-|...|.-+-..|...|++++|.-
T Consensus 99 ~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 344444555554444433 334444443333444444444444444443332 23344445555555555555555555
Q ss_pred HHHHhh
Q 009506 306 ALNRLP 311 (533)
Q Consensus 306 ~~~~m~ 311 (533)
.++++.
T Consensus 176 ClEE~l 181 (289)
T KOG3060|consen 176 CLEELL 181 (289)
T ss_pred HHHHHH
Confidence 444444
No 133
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.83 E-value=1.8e-05 Score=47.17 Aligned_cols=29 Identities=34% Similarity=0.743 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIG 138 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 138 (533)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 134
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.034 Score=55.97 Aligned_cols=56 Identities=13% Similarity=0.074 Sum_probs=31.1
Q ss_pred HHhcCChHHHHHHHHHHHHcC-------------CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009506 188 YGRARYGEDTLSVYREMKEKG-------------MQLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKSSE 243 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g-------------~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 243 (533)
++..|++.+|+++++...+.+ +.-... .--.|...+...|+.++|.+++....+..
T Consensus 185 ~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 185 LIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 345677888887777662211 110111 11123345566788888888777766654
No 135
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.80 E-value=2.7e-05 Score=46.34 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009506 386 AYCNCLIDLCVNLNLLENACKLLELGLTLEV 416 (533)
Q Consensus 386 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 416 (533)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998875
No 136
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.018 Score=51.88 Aligned_cols=187 Identities=14% Similarity=0.156 Sum_probs=137.2
Q ss_pred cCChHHHHHHHHHHHHC---C-CCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCh
Q 009506 121 AGNFDGCLNVYEEMKAI---G-VKPNMIT-YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL-LRAYGRARYG 194 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~---g-~~pd~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~ 194 (533)
..+.++..+++.++... | ..+|..+ |..++-+....|+.+.|...++++..+- |...-...| .-.+--.|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 45788889988888643 4 5566644 4556667778899999999999988753 433222111 1223346899
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (533)
++|+++++.+.+.+. .|.++|--=+...-..|.--+|++-+....+.. ..|...|.-+...|...|++++|.-.+++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--MNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999998873 478888877777777888889988888877764 68999999999999999999999999999
Q ss_pred HHHcCCCCC-HHHHHHHHHHHHh---cCChhHHHHHHHHhhhCC
Q 009506 275 MLEAGFEPN-LFVLTSLIQCYGK---AQRTDDVVRALNRLPELG 314 (533)
Q Consensus 275 m~~~g~~p~-~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g 314 (533)
+.-. .|. .-.+..+.+.+.. ..+...+.++|.+..+..
T Consensus 180 ~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 180 LLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8764 354 3344455554433 345667788888877654
No 137
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.80 E-value=0.00033 Score=69.34 Aligned_cols=124 Identities=14% Similarity=0.117 Sum_probs=76.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 173 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 173 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+.+.+......+++.+....+++.+..++-+.... ....-..|.+++|+.|.+.|..++++++++.=..-|+ =||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi-F~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI-FPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc-CCChh
Confidence 34456666666666666666666666666666553 2222233445666777777777777777666666664 66777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
++|.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777766666655555555555555544443
No 138
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.79 E-value=0.0048 Score=63.17 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=15.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 390 CLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 390 ~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
-+...+-..|++++|-+-+-+..+.
T Consensus 1000 k~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 1000 KLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHhhhhhhccchhhhhHhhHHHhhc
Confidence 3444556677888877766655443
No 139
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.034 Score=59.34 Aligned_cols=211 Identities=16% Similarity=0.160 Sum_probs=96.5
Q ss_pred hhHHHHHhhcCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 009506 93 KSYDTRARNEKW--RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQVKTIYKE 168 (533)
Q Consensus 93 ~~l~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~ 168 (533)
+++.+++...++ ..|+.--+..+.++...+-..+-+++++++.-. .+.-+...-|.||-...+. +..++.+..++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHH
Confidence 445555555554 336666666777777777777777777776521 1111222233344333332 33344555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 009506 169 MTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD 248 (533)
Q Consensus 169 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~ 248 (533)
+.... .|+. ...+...+-+++|..+|+...- +....+.||.- -+..+.|.++-++.. .
T Consensus 1046 LdnyD-a~~i------a~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie~---i~~ldRA~efAe~~n-------~ 1103 (1666)
T KOG0985|consen 1046 LDNYD-APDI------AEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIEN---IGSLDRAYEFAERCN-------E 1103 (1666)
T ss_pred hccCC-chhH------HHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHHH---hhhHHHHHHHHHhhC-------C
Confidence 44332 1221 2223334445555555544311 22233333321 133334433333322 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009506 249 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 328 (533)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 328 (533)
...|+.+..+-.+.|.+.+|.+-|-+. -|+..|..+|+...+.|.+++-.+++...++..-.|... ..||-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 234555555555555555555444321 344455555555555555555555555444444333333 234455
Q ss_pred HhcCCh
Q 009506 329 MTQTPK 334 (533)
Q Consensus 329 ~~~~~~ 334 (533)
|++.++
T Consensus 1176 yAkt~r 1181 (1666)
T KOG0985|consen 1176 YAKTNR 1181 (1666)
T ss_pred HHHhch
Confidence 555544
No 140
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.72 E-value=0.046 Score=55.68 Aligned_cols=275 Identities=12% Similarity=0.058 Sum_probs=151.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 118 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 197 (533)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 197 (533)
+...|+-++|......-.+..+ .+.+.|+.+.-.+-...++++|++.|......+ +-|..++.-|--.-++.|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 3445677777776666555432 355677777666666777777777777777654 34556666555555666677666
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH------HhcCChHHHHHH
Q 009506 198 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC------SCRGKVSEAEAM 271 (533)
Q Consensus 198 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~------~~~g~~~~A~~~ 271 (533)
...-.++.+.... ....|..+.-++--.|++..|.++++...+...-.|+...|.-..... .+.|.+++|.+.
T Consensus 129 ~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~ 207 (700)
T KOG1156|consen 129 LETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEH 207 (700)
T ss_pred HHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 6666665554222 455666666777777778888887777766542245666655443332 345666666666
Q ss_pred HHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH-HHHHHhcCCh-HHHH-HHHHHHHhc
Q 009506 272 FNEMLEAGFEPNLFV-LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC-LLNVMTQTPK-EELG-KLVECVEKS 347 (533)
Q Consensus 272 ~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~-~~a~-~~~~~~~~~ 347 (533)
+..-... + .|-.. -.+-...+.+.+++++|..+|..+...+ ||..-|.. +..++.+-.+ .++. .++....+.
T Consensus 208 L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 208 LLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 5543221 1 22222 2344556677788888888888877654 66654443 3344432222 3333 455554443
Q ss_pred CCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCC
Q 009506 348 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNL 400 (533)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~ 400 (533)
-+...+....-+.... ..++.+..-.++...-..+-+.++..+...|-.-..
T Consensus 284 y~r~e~p~Rlplsvl~-~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k 335 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLN-GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEK 335 (700)
T ss_pred CcccccchhccHHHhC-cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhH
Confidence 3333333211111111 122323333344444444455677777777765443
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.72 E-value=0.0057 Score=60.11 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN-WNTYASLLRAY 188 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~ 188 (533)
-|-.-+ .+...|++++|+..++.+... .+-|+.-+......+.+.++..+|.+.++.+... .|+ ....-.+..+|
T Consensus 309 ~YG~A~-~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~al 384 (484)
T COG4783 309 QYGRAL-QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHH-HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHH
Confidence 344333 344689999999999998875 2335555566677899999999999999999986 466 56777888999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
.+.|+..+|+.+++........ |...|..|..+|...|+..++..-.-+ +|...|+++.|
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~~~~A 444 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGRLEQA 444 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCCHHHH
Confidence 9999999999999999887655 899999999999999999988776543 45667889999
Q ss_pred HHHHHHHHHc
Q 009506 269 EAMFNEMLEA 278 (533)
Q Consensus 269 ~~~~~~m~~~ 278 (533)
...+....+.
T Consensus 445 ~~~l~~A~~~ 454 (484)
T COG4783 445 IIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHh
Confidence 9998887764
No 142
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.72 E-value=0.003 Score=53.66 Aligned_cols=85 Identities=13% Similarity=0.105 Sum_probs=36.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSV--TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
..+...|++++|...|+...+....++. ...-.|...+...|++++|+..++..... ......+....+.|.+.|
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~---~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE---AFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc---chHHHHHHHHHHHHHHCC
Confidence 3444445555555555555444322111 12222334444455555555555442211 122333444444555555
Q ss_pred ChHHHHHHHH
Q 009506 264 KVSEAEAMFN 273 (533)
Q Consensus 264 ~~~~A~~~~~ 273 (533)
++++|...|+
T Consensus 133 ~~~~A~~~y~ 142 (145)
T PF09976_consen 133 DYDEARAAYQ 142 (145)
T ss_pred CHHHHHHHHH
Confidence 5555555544
No 143
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.71 E-value=0.00049 Score=53.67 Aligned_cols=80 Identities=15% Similarity=0.294 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHcCCCcCHHHH
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRAR--------YGEDTLSVYREMKEKGMQLSVTLY 216 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~~~ 216 (533)
-...|..|...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556666667888888888888888888 788888888888877642 233456667777777777777777
Q ss_pred HHHHHHHHh
Q 009506 217 NTLLAMCAD 225 (533)
Q Consensus 217 ~~li~~~~~ 225 (533)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 777766544
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.70 E-value=0.006 Score=65.96 Aligned_cols=231 Identities=10% Similarity=0.028 Sum_probs=107.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN-TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 219 (533)
.+...|-.|+..+...+++++|.++.+...+. .|+.. .|-.+...|...++.+++..+ .+.+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 35677889999999999999999999976664 35543 333333366666776666555 3322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009506 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 299 (533)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 299 (533)
......++.....+.+.|...+ -+...+-.+..+|-+.|+.++|..+|+++.+.. +-|..+.|-+...|... +
T Consensus 92 --~~~~~~~~~~ve~~~~~i~~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 92 --SFSQNLKWAIVEHICDKILLYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred --hcccccchhHHHHHHHHHHhhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 2222222322222222333211 122344444444444555555555555544433 23344444444444444 4
Q ss_pred hhHHHHHHHHhhhCCCCCC--HHHHHHHHHHHhcCCh--HHHHHHHHHHHhc-CCCh-hHHHHHHHHhhhhhccHHHHHH
Q 009506 300 TDDVVRALNRLPELGITPD--DRFCGCLLNVMTQTPK--EELGKLVECVEKS-NSKL-GYVVKLLLEEQDIEGDFKKEAT 373 (533)
Q Consensus 300 ~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~--~~a~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~~a~ 373 (533)
+++|.+++.+....-+.-. .......-..|....+ +...++.+.+... +... ...+..+-..|....++ +++.
T Consensus 165 L~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~-~~~i 243 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDW-DEVI 243 (906)
T ss_pred HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh-hHHH
Confidence 4444444444433211000 0000000011111111 2222222222222 1111 11123344555555555 8899
Q ss_pred HHHhhhcc--CccchhhHHHHHHHH
Q 009506 374 ELFNSISK--DVKKAYCNCLIDLCV 396 (533)
Q Consensus 374 ~~~~~~~~--~~~~~~~~~li~~~~ 396 (533)
.+|+.+-. ..+.....-++..|.
T Consensus 244 ~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCCcchhhHHHHHHHHH
Confidence 99888754 234445566777665
No 145
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.69 E-value=0.001 Score=58.62 Aligned_cols=88 Identities=26% Similarity=0.388 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------------cCChhHHHH
Q 009506 247 PDSWTFSSMITICSC-----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK----------------AQRTDDVVR 305 (533)
Q Consensus 247 p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------------~g~~~~a~~ 305 (533)
.|-.+|..+++.|.+ .|.++-....++.|.+.|+..|..+|+.||+.+=+ -.+.+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 344455555554443 24455555555555555555566666665555432 134567899
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhcCCh
Q 009506 306 ALNRLPELGITPDDRFCGCLLNVMTQTPK 334 (533)
Q Consensus 306 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 334 (533)
++++|...|+.||..|+..|++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999999988776
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.64 E-value=0.0038 Score=52.99 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--HHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD--SWTFSS 254 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~ 254 (533)
..|..++..+. .++...+...++.+.+....-. ....-.+...+...|++++|...|+....... .++ ......
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP-DPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-CHHHHHHHHHH
Confidence 34555555553 7888888888888887643311 22233344778889999999999999887652 332 234456
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 255 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
|...+...|++++|...++...... .....+....+.|.+.|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788889999999999997743332 34456667788899999999999988763
No 147
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.53 E-value=0.022 Score=56.67 Aligned_cols=129 Identities=13% Similarity=0.154 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
.+|..+|+.-.|..-+..|..+|.+..+.+..+ ++.+++++|.-||. ++.+-|.++|+.=.+.. ..+..--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf--~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF--GDSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 345555555555555556666666655554444 45555555554443 45555666665433321 122333334455
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
-+...++-..|..+|++....++.|+ ...|..+|+-=..-|++..+.++-+++
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 55555555555666665555544433 345555555555555555555555444
No 148
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.51 E-value=0.17 Score=52.86 Aligned_cols=249 Identities=14% Similarity=0.037 Sum_probs=158.0
Q ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 162 VKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 162 a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 240 (533)
+++.+++..+.+ -.|++.-|- ---|+..++++.|.+...+..+.+-.-+...|..|.-.+...+++.+|+.+.+...
T Consensus 463 slqale~av~~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 444444444432 233333333 33456678899999999999998666689999999999999999999999997765
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH--------------------------------------------
Q 009506 241 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML-------------------------------------------- 276 (533)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------------------------------------------- 276 (533)
.... .|......-+..-...++.+++......+.
T Consensus 541 ~E~~--~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 541 EEFG--DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHhh--hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 4321 111111111111111222222221111110
Q ss_pred -------HcC---------CC--CC------HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC
Q 009506 277 -------EAG---------FE--PN------LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 332 (533)
Q Consensus 277 -------~~g---------~~--p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 332 (533)
..| +. |+ ...|......+.+.+..++|...+.+..... .-....|...-..+-..
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVK 697 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHH
Confidence 001 00 11 1234455566777888888887777765432 22333555554555566
Q ss_pred Ch-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHH--HHhhhc-cCc-cchhhHHHHHHHHhcCCHHHHHHH
Q 009506 333 PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATE--LFNSIS-KDV-KKAYCNCLIDLCVNLNLLENACKL 407 (533)
Q Consensus 333 ~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~--~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~A~~l 407 (533)
|. ++|...|......+|+.......++.++.+.|+- .-|.. ++..+. .+| +...|-.+...+.+.|+.++|.+.
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~-~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP-RLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc-chHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHH
Confidence 67 9999999999999999999999999999888854 44444 555543 344 566999999999999999999999
Q ss_pred HHHHHhccc
Q 009506 408 LELGLTLEV 416 (533)
Q Consensus 408 ~~~m~~~g~ 416 (533)
|+...+..-
T Consensus 777 f~aa~qLe~ 785 (799)
T KOG4162|consen 777 FQAALQLEE 785 (799)
T ss_pred HHHHHhhcc
Confidence 998876653
No 149
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.098 Score=52.25 Aligned_cols=321 Identities=16% Similarity=0.147 Sum_probs=170.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
|.+.|+.=..+|++.|++++|++=-.+-.+ +.|+ ..-|+-...++.-.|++++|+.-|.+-++.. +-|...++-|.
T Consensus 35 nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~ 111 (539)
T KOG0548|consen 35 NHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLA 111 (539)
T ss_pred ccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHH
Confidence 778888888888888888888776655554 4566 3568888888888889999998888887754 45667788888
Q ss_pred HHHHhcCChHH------------------------H-HHHHHHHHHc-------------------------------CC
Q 009506 186 RAYGRARYGED------------------------T-LSVYREMKEK-------------------------------GM 209 (533)
Q Consensus 186 ~~~~~~g~~~~------------------------a-~~~~~~m~~~-------------------------------g~ 209 (533)
.++.-....++ + ..+++.+... |.
T Consensus 112 ~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~ 191 (539)
T KOG0548|consen 112 QAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGI 191 (539)
T ss_pred HhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCcccccccccc
Confidence 77721100000 0 0000000000 00
Q ss_pred -------Cc------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009506 210 -------QL------------S----------VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 260 (533)
Q Consensus 210 -------~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 260 (533)
.| | ..-.-.+.++..+..+++.|++-+....+. .-+..-++..-.+|.
T Consensus 192 ~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el---~~~it~~~n~aA~~~ 268 (539)
T KOG0548|consen 192 EILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL---ATDITYLNNIAAVYL 268 (539)
T ss_pred ccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH---hhhhHHHHHHHHHHH
Confidence 00 0 001122223333333334444444333321 222233344444555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC
Q 009506 261 CRGKVSEAEAMFNEMLEAGFEPNLFVL-------TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 333 (533)
Q Consensus 261 ~~g~~~~A~~~~~~m~~~g~~p~~~~~-------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 333 (533)
..|.+.++...-....+.|.. ...-| ..+-.+|.+.++++.++..|.+....-..||.. .+..
T Consensus 269 e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk 338 (539)
T KOG0548|consen 269 ERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLK 338 (539)
T ss_pred hccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHH
Confidence 555555544444443333211 11111 122234455566666666666644332222211 1111
Q ss_pred h-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc-cC-ccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009506 334 K-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS-KD-VKKAYCNCLIDLCVNLNLLENACKLLEL 410 (533)
Q Consensus 334 ~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~-~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~ 410 (533)
. +++.+..+...-.+|....-...-+..+.+.|++ ..|...+.++. .. .|...|..-.-+|.+.|.+.+|++=.+.
T Consensus 339 ~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy-~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~ 417 (539)
T KOG0548|consen 339 EAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY-PEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKK 417 (539)
T ss_pred HHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2 3344433333344555544334446667777887 67777776653 33 3667888888899999998888876666
Q ss_pred HHhccccCCccccCccceeecccccCh-hhHHHHHHHHHHHHHHHHHcC
Q 009506 411 GLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIWINDLSKALESG 458 (533)
Q Consensus 411 m~~~g~~~~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~l~~~~~~g 458 (533)
.++. .|+ .+.+|.. |.+..++..|-..++ ++..+
T Consensus 418 ~ieL--~p~-----------~~kgy~RKg~al~~mk~ydkAle-ay~ea 452 (539)
T KOG0548|consen 418 CIEL--DPN-----------FIKAYLRKGAALRAMKEYDKALE-AYQEA 452 (539)
T ss_pred HHhc--Cch-----------HHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 5554 222 2344444 777888777766654 34444
No 150
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.50 E-value=0.0031 Score=60.06 Aligned_cols=129 Identities=12% Similarity=0.163 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 223 (533)
+|..++..+-+.+..+.|..+|++.++.+ ..+..+|...... |...++.+.|.+||+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555555555555555332 1122333333222 11234444455555555543 222455555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 224 ADVGYTDEAFEIFEDMKSSENCQPD---SWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
.+.|+.+.|..+|++....- .++ ...|...++.=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l--~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSL--PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTS--SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666665555431 111 13555555555555555555555555544
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.48 E-value=0.0025 Score=48.65 Aligned_cols=94 Identities=23% Similarity=0.273 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
|..+...+...|++++|+.+|++..+.. +.+...+..+...+...+++++|.+.|+...... +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4445556666667777777776665532 1233455556666666666666666666665543 2233455555556666
Q ss_pred cCChHHHHHHHHHHHH
Q 009506 191 ARYGEDTLSVYREMKE 206 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~ 206 (533)
.|+.+.|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666666555443
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.47 E-value=0.0052 Score=49.81 Aligned_cols=97 Identities=8% Similarity=0.016 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYAS 183 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ 183 (533)
++-.+...+.+.|++++|.+.|+.+.... |+ ...+..+..++.+.|++++|.+.|+.+.... .......+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 44555666666677777777776665432 22 2344556666666667777777766666432 1111344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKG 208 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g 208 (533)
+..++.+.|+.++|.+.++++.+..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 5566666666666666666666653
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.46 E-value=0.0022 Score=48.89 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=9.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 009506 287 LTSLIQCYGKAQRTDDVVRALNR 309 (533)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~ 309 (533)
+..+...+...|+.++|...+..
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 33333333334444444443333
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.44 E-value=0.015 Score=55.60 Aligned_cols=175 Identities=13% Similarity=0.175 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP-N----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 182 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 182 (533)
...|......|...|++++|.+.|.+..+..... + ...|......| +..++++|++.|++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~-------------- 99 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEK-------------- 99 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHH--------------
Confidence 3456777777777788888887777654310000 0 01122222222 22244444443333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCCCHHHHHHHHH
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV-GYTDEAFEIFEDMKSS----ENCQPDSWTFSSMIT 257 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~~p~~~~~~~li~ 257 (533)
.+..|.+.|++..|-+++.++ ...|-.. |++++|++.|++.... +...--..++..+..
T Consensus 100 -A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 -AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAAD 163 (282)
T ss_dssp -HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHH
Confidence 344455555555554444433 2334444 6667766666554432 100001334456666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC-----CCCHH-HHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGF-----EPNLF-VLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
.+.+.|++++|.++|++....-. +.+.. .|...+-++...|+.-.|...|++....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67777777777777777654321 11221 2223333555567777777777776543
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.40 E-value=0.0031 Score=59.98 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM-CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
.+|..+|+...+.+..+.|..+|.+.++.+. .+..+|-..... |...++.+.|.++|+...+.. ..+...|..-++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 3566666666666667777777776664322 122223332222 222355555777776666553 456666666666
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGFEPNL----FVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
.+.+.++.+.|..+|++.... + +.. ..|...++-=.+.|+++.+.++.+++.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666777777777777665543 2 222 3566666666666666666666666654
No 156
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.37 E-value=0.0078 Score=48.75 Aligned_cols=97 Identities=11% Similarity=-0.020 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHHHH
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGL--SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ--LSVTLYNTLLA 221 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~ 221 (533)
+..+...+.+.|++++|.+.|+.+.+..- ......+..+...+.+.|+++.|...|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444445555555555555555554210 001233444555555555555555555555443211 11233444444
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 009506 222 MCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~ 242 (533)
++.+.|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 455555555555555555443
No 157
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.30 E-value=0.013 Score=51.44 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN--WNTYASLLRAYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 206 (533)
.|..+...+...|++++|...|++..+..-.++ ...+..+...|.+.|++++|...+++..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445555555555555555544321111 23444444444445555555554444444
No 158
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.22 E-value=0.0075 Score=59.59 Aligned_cols=85 Identities=12% Similarity=0.035 Sum_probs=40.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 269 (533)
..|++++|++.|++..+.... +...|..+..+|.+.|++++|+..+++..... +.+...|..+..+|...|++++|.
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 344444555555444443322 34444444444555555555555555444432 223444444445555555555555
Q ss_pred HHHHHHHH
Q 009506 270 AMFNEMLE 277 (533)
Q Consensus 270 ~~~~~m~~ 277 (533)
..|++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555444
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.22 E-value=0.018 Score=50.41 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
....|..+...|.+.|++++|+..|++..+....++ ...|..+...+.+.|++++|+..+++..+.. +-+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 456688888899999999999999999986432222 4678888999999999999999999998753 2356667777
Q ss_pred HHHHHhcCChHHHHHH
Q 009506 185 LRAYGRARYGEDTLSV 200 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~ 200 (533)
...|...|+...+..-
T Consensus 113 g~~~~~~g~~~~a~~~ 128 (172)
T PRK02603 113 AVIYHKRGEKAEEAGD 128 (172)
T ss_pred HHHHHHcCChHhHhhC
Confidence 7788887775554433
No 160
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.20 E-value=0.0039 Score=56.75 Aligned_cols=90 Identities=19% Similarity=0.278 Sum_probs=61.1
Q ss_pred CCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----------------hH
Q 009506 103 KWRIDPNAFSTLIKLYGTA-----GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP----------------WQ 161 (533)
Q Consensus 103 g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~----------------~~ 161 (533)
+-+.|-.+|-+.+..+... +.++-....++.|.+.|+..|..+|+.||+.+-+-... +-
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C 141 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC 141 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence 4466888888888888654 56777777788999999999999999999887654321 12
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 192 (533)
+++++++|...|+.||..+-..|++++++.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4555555555555555555555555555444
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.18 E-value=0.0093 Score=52.04 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 180 TYASLLRAYGRARYGEDTLSVYREMKEKGMQL--SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 180 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
.|..+...+...|++++|+..|++.......+ ...+|..+...|...|++++|++.++...... +....++..+..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHH
Confidence 34444444555555555555555554432211 12345555555555666666666665555432 223333444444
Q ss_pred HHH
Q 009506 258 ICS 260 (533)
Q Consensus 258 ~~~ 260 (533)
.|.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 162
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.13 E-value=0.01 Score=58.69 Aligned_cols=86 Identities=14% Similarity=-0.002 Sum_probs=44.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 009506 154 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF 233 (533)
Q Consensus 154 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 233 (533)
...|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|+
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHHH
Confidence 34455555555555555432 223444555555555555555555555555554322 3445555555555555555555
Q ss_pred HHHHHHHh
Q 009506 234 EIFEDMKS 241 (533)
Q Consensus 234 ~~~~~m~~ 241 (533)
..|++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555554
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.08 E-value=0.0015 Score=49.51 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=7.6
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 009506 255 MITICSCRGKVSEAEAMFN 273 (533)
Q Consensus 255 li~~~~~~g~~~~A~~~~~ 273 (533)
+..+|.+.|++++|..+++
T Consensus 31 la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3333344444444444443
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.03 E-value=0.0013 Score=49.89 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=38.3
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009506 121 AGNFDGCLNVYEEMKAIGVK-PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 199 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~-pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 199 (533)
.|+++.|+.+|+++.+.... ++...+-.+..++.+.|++++|..+++. .+.+ ..+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666543211 1233333455566666666666666655 2111 1122333344555555666666665
Q ss_pred HHHH
Q 009506 200 VYRE 203 (533)
Q Consensus 200 ~~~~ 203 (533)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 165
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.02 E-value=0.048 Score=45.97 Aligned_cols=84 Identities=8% Similarity=-0.019 Sum_probs=36.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 269 (533)
..|++++|..+|+-+....+. +..-|-.|.-++-..|++++|++.|....... +.|...+-.+..++...|+.+.|.
T Consensus 47 ~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--~ddp~~~~~ag~c~L~lG~~~~A~ 123 (157)
T PRK15363 47 EVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--IDAPQAPWAAAECYLACDNVCYAI 123 (157)
T ss_pred HCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHcCCHHHHH
Confidence 344444444444444443322 33333344444444444444444444444433 233444444444444444444444
Q ss_pred HHHHHHH
Q 009506 270 AMFNEML 276 (533)
Q Consensus 270 ~~~~~m~ 276 (533)
+.|+...
T Consensus 124 ~aF~~Ai 130 (157)
T PRK15363 124 KALKAVV 130 (157)
T ss_pred HHHHHHH
Confidence 4444433
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.02 E-value=0.016 Score=48.77 Aligned_cols=96 Identities=10% Similarity=0.043 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 294 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 294 (533)
..-.+-.-+...|++++|.++|+.+..-. +-+..-|-.|.-+|-..|++++|...|....... +-|...+-.+-.++
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 34444555667788888888888777644 3456667777777778888888888888776654 24566777777788
Q ss_pred HhcCChhHHHHHHHHhhhC
Q 009506 295 GKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 295 ~~~g~~~~a~~~~~~m~~~ 313 (533)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888876654
No 167
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.98 E-value=0.23 Score=46.13 Aligned_cols=57 Identities=14% Similarity=0.133 Sum_probs=36.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 254 SMITICSCRGKVSEAEAMFNEMLEA--GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
.+.+-|.+.|.+..|..-|+.+.+. +.+........++.+|...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4455577777777777777777653 22333455566677777777777777665544
No 168
>smart00463 SMR Small MutS-related domain.
Probab=96.96 E-value=0.0034 Score=46.97 Aligned_cols=76 Identities=32% Similarity=0.543 Sum_probs=60.1
Q ss_pred eeecccccChhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeecccccc-chhHHHHHHHHhhhcCCCCCCCCCCcceE
Q 009506 428 WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYS-DKGLASVFESHLKELNAPFHDSPDKVGWF 506 (533)
Q Consensus 428 ~~~~l~~~~~g~~~~a~~~~~~~l~~~~~~g~~~p~~~~i~~~~~~~~~~-~~~l~~~~~~~L~~~~~~f~~~~~~~g~~ 506 (533)
|.+++++++.+.|..++..|++...+ .+ .+..+.|++|.|.|+.. ...+...+.+.+.....+|.+. .|.|++
T Consensus 2 ~~lDLHG~~~~eA~~~l~~~l~~~~~---~~--~~~~~~II~G~G~~s~~g~~~i~~~l~~~l~~~~~~~~~~-~~~G~~ 75 (80)
T smart00463 2 WSLDLHGLTVEEALTALDKFLNNARL---KG--LEQKLVIITGKGKHSLGGKSGVKPALKEHLRVESFRFAEE-GNSGVL 75 (80)
T ss_pred CeEEcCCCCHHHHHHHHHHHHHHHHH---cC--CCceEEEEEcccCCCccchhhHHHHHHhchhhcccccCCC-CCCeEE
Confidence 67899999999999999988776653 23 21468999999999862 3567888899999888888764 899998
Q ss_pred EEe
Q 009506 507 LTT 509 (533)
Q Consensus 507 ~~~ 509 (533)
+..
T Consensus 76 ~v~ 78 (80)
T smart00463 76 VVK 78 (80)
T ss_pred EEE
Confidence 864
No 169
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.94 E-value=0.028 Score=49.02 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP--NMITYNNLLDTMGRAKRPWQVKTIYKEMTD 171 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (533)
...|..+...+...|++++|+..|++.......+ ...+|..+-..+...|++++|++.+++..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4445555555555556666666555554321111 122445555555555555555555555544
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.90 E-value=0.094 Score=54.35 Aligned_cols=146 Identities=10% Similarity=-0.005 Sum_probs=90.0
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 009506 173 GLSPNWNTYASLLRAYGRAR-----YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV--------GYTDEAFEIFEDM 239 (533)
Q Consensus 173 g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m 239 (533)
+.+.|...|...+++..... ..+.|..+|++..+.... ....|..+..+|... .++..+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 34567788888887755432 356788888888876433 334444433333221 1223344444443
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009506 240 KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 319 (533)
Q Consensus 240 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 319 (533)
........+...|..+.-.+...|++++|...+++..+.+ |+...|..+...|...|+.++|.+.|++..+.+ |..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC
Confidence 3321113455677777666667788888888888877754 677788888888888888888888888876543 444
Q ss_pred HHHH
Q 009506 320 RFCG 323 (533)
Q Consensus 320 ~~~~ 323 (533)
.+|.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 4433
No 171
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.86 E-value=0.15 Score=54.66 Aligned_cols=162 Identities=13% Similarity=0.095 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH--HHHHHHH
Q 009506 180 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW--TFSSMIT 257 (533)
Q Consensus 180 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~--~~~~li~ 257 (533)
.|..|-..|+...+...|.+.|+...+.+-. |...+..+.+.|++..++++|..+.-...+.. +.-.. .|.-..-
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka--~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKA--PAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhc--hHHHHHhhhhhccc
Confidence 4555555555555555566666555544322 44455555666666666666666632222211 11111 1222333
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH--HHhcCCh-
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN--VMTQTPK- 334 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~- 334 (533)
.|.+.++...|..-|+...... +.|...|..+.++|...|++..|.++|.+.... .|+.. |...-. ..+..|.
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~-y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSK-YGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhH-HHHHHHHHHHHHhhhH
Confidence 3455556666666665544432 234566666777777777777777777666543 34332 111111 1223344
Q ss_pred HHHHHHHHHHHhcC
Q 009506 335 EELGKLVECVEKSN 348 (533)
Q Consensus 335 ~~a~~~~~~~~~~~ 348 (533)
.++...++.+....
T Consensus 647 keald~l~~ii~~~ 660 (1238)
T KOG1127|consen 647 KEALDALGLIIYAF 660 (1238)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554433
No 172
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=0.17 Score=46.08 Aligned_cols=131 Identities=9% Similarity=0.034 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH-----
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL----- 220 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li----- 220 (533)
.+.++..+.-.|.+.-...++++.++..-+.++.....|.+.-.+.|+.+.|...|+...+..-..|..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344555555555666666666666665545555666666666666666666666666555433333333333333
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
..|.-.+++..|...|.++.... ..|.+.-|.-.-+..-.|+..+|.+.+..|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22333455555555555555443 233443333333333345555666666665553
No 173
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.32 Score=48.75 Aligned_cols=187 Identities=13% Similarity=0.129 Sum_probs=103.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH-------
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYAS------- 183 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~------- 183 (533)
+..+.++..+..++..|++-++...+.. -+..-++..-.+|...|.+.+....-+...+.|- -...-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 5667788888889999999998887743 3454556666678888888777666666655542 12222332
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhc
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS-WTFSSMITICSCR 262 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~ 262 (533)
+-.+|.+.++++.+...|.+.......||... +....+++.+..+...-. .|+. .-.-.-...+.+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~---~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAYI---NPEKAEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhh---ChhHHHHHHHHHHHHHhc
Confidence 33466667788888888887665433333221 122223333333222221 2221 1111123445556
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 263 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 263 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
|++..|.+.|.+++... +-|...|..-.-+|.+.|.+..|+.-.+...+.
T Consensus 372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 66666666666655543 334455555555666666666555554444443
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.75 E-value=0.1 Score=49.87 Aligned_cols=147 Identities=16% Similarity=0.235 Sum_probs=79.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHH----cCCCCC--HHHHH
Q 009506 216 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-GKVSEAEAMFNEMLE----AGFEPN--LFVLT 288 (533)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~----~g~~p~--~~~~~ 288 (533)
|...+..|...|++..|-+++..+ ...|-.. |++++|.+.|.+..+ .| .+. ...+.
T Consensus 97 ~~~A~~~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~ 159 (282)
T PF14938_consen 97 YEKAIEIYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLL 159 (282)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHH
Confidence 333445566666666666665554 3456666 788888888887654 22 111 34566
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCC-----CCHH--HHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCh-----hHHH
Q 009506 289 SLIQCYGKAQRTDDVVRALNRLPELGIT-----PDDR--FCGCLLNVMTQTPK-EELGKLVECVEKSNSKL-----GYVV 355 (533)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~--~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~-----~~~~ 355 (533)
.+...+.+.|++++|.++|+++...-.. .+.. .+..+| .+...|+ ..|.+.++......|.. ..++
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 7778899999999999999998664322 1121 233333 3334456 77777777766554432 2233
Q ss_pred HHHHHhhhhh-ccHHHHHHHHHhhhc
Q 009506 356 KLLLEEQDIE-GDFKKEATELFNSIS 380 (533)
Q Consensus 356 ~~l~~~~~~~-g~~~~~a~~~~~~~~ 380 (533)
.-|+.++... .+..+++..-|+++.
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 4444444332 112244444444444
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.74 E-value=0.15 Score=52.78 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
+...|.++.-.+...|++++|...|++.... .|+...|..+...|...|+.++|.+.|++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL---EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555544444556666666666666654 34566666666666666666666666666544
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.71 E-value=0.0059 Score=43.94 Aligned_cols=20 Identities=20% Similarity=0.338 Sum_probs=7.0
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 009506 255 MITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~ 274 (533)
+..+|.+.|++++|.++++.
T Consensus 31 la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 31 LAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HHHHHHHTT-HHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 33333333333333333333
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.70 E-value=0.11 Score=42.05 Aligned_cols=52 Identities=15% Similarity=0.173 Sum_probs=20.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 154 GRAKRPWQVKTIYKEMTDNGLSPN--WNTYASLLRAYGRARYGEDTLSVYREMK 205 (533)
Q Consensus 154 ~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 205 (533)
-..|+.++|+.+|++....|.... ...+-.+-..|...|++++|..+|++..
T Consensus 12 d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 12 DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444443222 1222233333444444444444444433
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.70 E-value=0.0083 Score=43.12 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=30.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
+.|++++|+++|+++.+.... +...+..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455666666666666555433 5555555666666666666666666665554
No 179
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.68 E-value=0.095 Score=56.13 Aligned_cols=161 Identities=12% Similarity=0.067 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA--SLLR 186 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~ 186 (533)
..|+.|...|...-+...|.+.|+...+.. .-|...+..+...|++..+++.|..+.-..-+.. +.-...+| -+--
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccc
Confidence 345666666655556666666666665432 1244555566666666666666666522211110 00111111 1222
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHhcCCh
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT-FSSMITICSCRGKV 265 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~g~~ 265 (533)
.|.+.++..++..-|+...+..+. |...|..+..+|.+.|++..|.++|.+.... .|+... ---...+-+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L---rP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL---RPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc---CcHhHHHHHHHHHHHHHhhhH
Confidence 344555566666666655555443 5666666666666666666666666655542 333211 11112233455666
Q ss_pred HHHHHHHHHH
Q 009506 266 SEAEAMFNEM 275 (533)
Q Consensus 266 ~~A~~~~~~m 275 (533)
.+|...+...
T Consensus 647 keald~l~~i 656 (1238)
T KOG1127|consen 647 KEALDALGLI 656 (1238)
T ss_pred HHHHHHHHHH
Confidence 6666655554
No 180
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.66 E-value=0.62 Score=44.17 Aligned_cols=266 Identities=11% Similarity=0.070 Sum_probs=174.4
Q ss_pred CCCHHHHHHHH---HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--
Q 009506 105 RIDPNAFSTLI---KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN-NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW-- 178 (533)
Q Consensus 105 ~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-- 178 (533)
.-|+..|-++. ..|...|+-.-|+.=|++..+ ++||-..-. .--..+.+.|.+++|..=|+..++.. |+.
T Consensus 66 e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~ 141 (504)
T KOG0624|consen 66 EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGL 141 (504)
T ss_pred cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcch
Confidence 44566665554 357778888888888888877 467753321 11235678999999999999998754 321
Q ss_pred --HHH------------HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009506 179 --NTY------------ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 244 (533)
Q Consensus 179 --~~~------------~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 244 (533)
..+ ...+..+.-.|+...|+.....+.+..+- |...|..-..+|...|++..|+.=++...+..
T Consensus 142 ~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs- 219 (504)
T KOG0624|consen 142 VLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS- 219 (504)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-
Confidence 111 22345556678999999999988887544 77888888899999999999988887776654
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH----HHHH---------HHHHHhcCChhHHHHHHHHhh
Q 009506 245 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV----LTSL---------IQCYGKAQRTDDVVRALNRLP 311 (533)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~l---------i~~~~~~g~~~~a~~~~~~m~ 311 (533)
..++.++--+-..+-..|+.+.++...++..+. .||... |-.| +......++|-++++-.+...
T Consensus 220 -~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 220 -QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL 296 (504)
T ss_pred -ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 466777777788888889999988888887763 355322 2111 112345677777888777776
Q ss_pred hCCCCCCHHHH---HHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc
Q 009506 312 ELGITPDDRFC---GCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 380 (533)
Q Consensus 312 ~~g~~p~~~~~---~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~ 380 (533)
+.........+ ..+-.++...+. .+|++.-.++....|+...++.--..+|.....+ +.|..-|+...
T Consensus 297 k~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y-D~AI~dye~A~ 368 (504)
T KOG0624|consen 297 KNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY-DDAIHDYEKAL 368 (504)
T ss_pred hcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH-HHHHHHHHHHH
Confidence 65433223333 333333344455 7777777777777777665554444444444433 66666665543
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.59 E-value=0.16 Score=41.08 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=76.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHH
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPN--MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN----WNTYASLLRA 187 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~ 187 (533)
+..++-..|+.++|+.+|++....|...+ ...+-.+-+.+...|++++|+.+|++..... |+ ......+.-+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 45667788999999999999999887654 3355567788899999999999999998752 43 2223333446
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 224 (533)
+...|+.++|...+-..... +...|.--|..|+
T Consensus 85 L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 67789999998888765543 4446666665554
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.57 E-value=0.43 Score=41.17 Aligned_cols=99 Identities=13% Similarity=0.076 Sum_probs=49.4
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHH
Q 009506 211 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA---GFEPNLFVL 287 (533)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~ 287 (533)
|++..--.|..+..+.|++.+|...|++... |.+.-|....-.+.++....+++..|...++.+.+. +-.|| +.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 4444444455555555555555555555442 323445555555555555555555555555554442 11222 22
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 288 TSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 288 ~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
..+...|...|+..+|..-|+....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH
Confidence 3344455555555555555555544
No 183
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.56 E-value=0.64 Score=43.16 Aligned_cols=173 Identities=11% Similarity=-0.019 Sum_probs=93.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHH---HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009506 149 LLDTMGRAKRPWQVKTIYKEMTDNGLSPN-WNTY---ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224 (533)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~---~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 224 (533)
....+...|++++|++.|+++...- |+ .... -.+..+|.+.+++++|...+++..+....-...-|...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 3444556777888888887777642 22 2222 3455667777888888888877777643322333333333322
Q ss_pred h--cC---------------C---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 009506 225 D--VG---------------Y---TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 284 (533)
Q Consensus 225 ~--~g---------------~---~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 284 (533)
. .+ | ..+|++.|+++.+ -|-...-..+|...+..+... . .
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~---l-a 175 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDR---L-A 175 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHH---H-H
Confidence 1 00 1 1233344444333 333333345555544444321 0 1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhC--CCCCCHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 009506 285 FVLTSLIQCYGKAQRTDDVVRALNRLPEL--GITPDDRFCGCLLNVMTQTPK-EELGKLVEC 343 (533)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~ 343 (533)
..-..+..-|.+.|.+..|..-|+.+.+. +..........+..+|...|. +++......
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 11124556678888888888888888764 333334456667777777776 665554443
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.51 E-value=0.015 Score=41.29 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=26.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
.+.+.|++++|++.|+++.+.. +-+...+..+..++...|++++|...|+++.+
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555443 22444444555555555555555555555443
No 185
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.50 E-value=1.6 Score=46.81 Aligned_cols=224 Identities=13% Similarity=0.087 Sum_probs=150.2
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 119 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM--GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 196 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 196 (533)
...+++.+|+...+++.+. -||. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3567899999999988764 3565 455666665 5889999999999888776644 88999999999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC----------ChH
Q 009506 197 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG----------KVS 266 (533)
Q Consensus 197 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g----------~~~ 266 (533)
|..+|+..... .|+......+..+|.+.+++.+-.++-=++-+.. +-+...|=++++.+.+.- -..
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~--pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF--PKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999998876 4567778888889999988876555444444321 334555555555554422 145
Q ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHH-HHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 009506 267 EAEAMFNEMLEAG-FEPNLFVLTSLIQCYGKAQRTDDVVRAL-NRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 343 (533)
Q Consensus 267 ~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~ 343 (533)
.|.+.++.+.+.+ ..-+..=...-...+...|++++|+.++ ....+.-..-+...-+.-+..+...+. .+..++...
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 7888888887754 2222222222233445678899999988 444444333444444455555555555 666666666
Q ss_pred HHhcCCC
Q 009506 344 VEKSNSK 350 (533)
Q Consensus 344 ~~~~~~~ 350 (533)
+...+++
T Consensus 252 Ll~k~~D 258 (932)
T KOG2053|consen 252 LLEKGND 258 (932)
T ss_pred HHHhCCc
Confidence 6655555
No 186
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.44 E-value=0.072 Score=43.61 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHH
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYRE 203 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~ 203 (533)
..++..+|.++++.|+++....+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~ 27 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKS 27 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 44555666666666666655555543
No 187
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.40 E-value=0.029 Score=51.93 Aligned_cols=99 Identities=14% Similarity=0.161 Sum_probs=63.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChh
Q 009506 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 301 (533)
..+.+++.+|+..|.+..+.. +-|.+.|..-..+|++.|.++.|++-.+..+.. .|+ ..+|..|-.+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 345667777777777666643 346666666677777777777777666665542 233 456777777777777777
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009506 302 DVVRALNRLPELGITPDDRFCGCLLN 327 (533)
Q Consensus 302 ~a~~~~~~m~~~g~~p~~~~~~~ll~ 327 (533)
+|.+.|++..+ +.|+-.+|-.=|.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 77777776654 4566666654443
No 188
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.36 E-value=1.2 Score=44.63 Aligned_cols=164 Identities=11% Similarity=0.139 Sum_probs=84.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 193 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 193 (533)
+|.-.-+..+.+.-++.-.+..+ +.||..+.-.++ +--.+....++.++|++..+.|- .. |.+...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~-------lg~s~~ 239 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----AS-------LGKSQF 239 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hh-------hchhhh
Confidence 34444455566666666666555 345553322222 22234557788888887765431 00 001000
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 273 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 273 (533)
.+..-..++.+..+...+-..+-..+..++-+.|+.++|.+.|++|.+......+......|+.++...+.+.++..++.
T Consensus 240 ~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 240 LQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00001111222222222223333345555567788888888888887643212234466778888888888888888888
Q ss_pred HHHHcCCCCC-HHHHHHHH
Q 009506 274 EMLEAGFEPN-LFVLTSLI 291 (533)
Q Consensus 274 ~m~~~g~~p~-~~~~~~li 291 (533)
+..+...+.+ ...|+..+
T Consensus 320 kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 320 KYDDISLPKSATICYTAAL 338 (539)
T ss_pred HhccccCCchHHHHHHHHH
Confidence 7644332222 34555544
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.31 E-value=0.62 Score=40.23 Aligned_cols=134 Identities=12% Similarity=0.069 Sum_probs=86.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009506 175 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 254 (533)
Q Consensus 175 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 254 (533)
.|++..--.|..+..+.|+..+|...|++...--+.-|....-.+.++....++..+|...++++.+...-.....+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 46666666777777777777777777777766545556666667777777777777777777776654311112334455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 255 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
+.+.|...|.+.+|+.-|+..... .|+...-...-..+.+.|+.+++..-+.++
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 667777778888788877777663 355444333344456667666655544444
No 190
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.25 E-value=0.061 Score=49.87 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=36.4
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 270 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (533)
.+++.+|+..|.+.++.... |.+-|..-..+|.+.|.++.|++-.+...... +--..+|..|-.+|...|++++|.+
T Consensus 94 ~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD--p~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID--PHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHccCcHHHHHH
Confidence 34444444444444443222 34444444444444444444444444433321 1223444444444444444444444
Q ss_pred HHHHHHH
Q 009506 271 MFNEMLE 277 (533)
Q Consensus 271 ~~~~m~~ 277 (533)
.|++.++
T Consensus 171 aykKaLe 177 (304)
T KOG0553|consen 171 AYKKALE 177 (304)
T ss_pred HHHhhhc
Confidence 4444433
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.25 E-value=0.56 Score=42.26 Aligned_cols=176 Identities=14% Similarity=0.115 Sum_probs=81.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHH
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEMKAIGV--KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW--NTYASLLRAY 188 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~ 188 (533)
.....+.+.|++.+|++.|+++..... +--....-.+..++.+.|+++.|...|+++.+.- |+. .-+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHHH
Confidence 344555678888888888888876421 1122344566777888888888888888877542 221 2222222222
Q ss_pred HhcCChHHHHHHHHHHHHcCCC---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 189 GRARYGEDTLSVYREMKEKGMQ---LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
+......... ....... --...+..+|.-|=......+|...+..+... - ...--.+...|.+.|.+
T Consensus 88 ~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----l-a~~e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 88 SYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----L-AEHELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----H-HHHHHHHHHHHHCTT-H
T ss_pred HHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----H-HHHHHHHHHHHHHcccH
Confidence 2111110000 0000000 00122333333343444444444444433321 0 00111245566677777
Q ss_pred HHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhH
Q 009506 266 SEAEAMFNEMLEAGFEPNL----FVLTSLIQCYGKAQRTDD 302 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~ 302 (533)
..|..-++.+.+. -|+. ...-.|+.+|.+.|..+.
T Consensus 158 ~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 158 KAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHH
Confidence 7777777766654 2332 334555666666666553
No 192
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.22 E-value=0.064 Score=43.89 Aligned_cols=47 Identities=13% Similarity=0.209 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHHHHHHHHH
Q 009506 175 SPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLA 221 (533)
Q Consensus 175 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~ 221 (533)
.|+..+..+++.+|+..|++..|.++++...+. +++.+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344444444555554444554444444444332 34444444444443
No 193
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.19 E-value=0.24 Score=49.15 Aligned_cols=65 Identities=12% Similarity=0.078 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDN 172 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 172 (533)
.++..|+.+..+|.+.|++++|+..|++..+. .||. .+|..+..+|...|+.++|++.|++.++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36778999999999999999999999998874 5764 35899999999999999999999999885
No 194
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.15 E-value=0.024 Score=40.30 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=28.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
..+.+.|++++|..+|+++.+.... +...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555554422 444555555555555555555555555543
No 195
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.15 E-value=0.029 Score=40.37 Aligned_cols=59 Identities=19% Similarity=0.177 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHH
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG-KVSEAEAMFNEM 275 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m 275 (533)
+|..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.| ++++|.+.|++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 34444444444444444444444444332 223444444444444444 344444444443
No 196
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.11 E-value=1.1 Score=43.97 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 282 PNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 282 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
.+--.+.+++.++.-.|+.++|.+..++|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34455566777777777777777777777655
No 197
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.07 E-value=0.044 Score=46.44 Aligned_cols=70 Identities=16% Similarity=0.267 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-----AGFEPNLFV 286 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 286 (533)
+...++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+...|.++|+.+.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44555666667777777777777777654 45677777777777777777777777776542 366666544
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.01 E-value=0.041 Score=39.60 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-YTDEAFEIFEDMKS 241 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~ 241 (533)
..+|..+...+...|++++|+..|++..+.... +...|..+..+|.+.| ++++|++.|++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 445555566666666666666666666655433 4555556666666666 46666666655443
No 199
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.00 E-value=0.1 Score=47.91 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=49.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------------CChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA----------------QRTDDVVRALNRLPELGITPDDRFCGCLLN 327 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 327 (533)
.++-....++.|.+.|+..|..+|+.||..+=+- .+-+-++.++++|...|+.||..+-..|++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 3444444444455555555555555554443221 223457788888888888888888888888
Q ss_pred HHhcCCh--HHHHHHHHHHH
Q 009506 328 VMTQTPK--EELGKLVECVE 345 (533)
Q Consensus 328 ~~~~~~~--~~a~~~~~~~~ 345 (533)
++.+.+. ....++.-.|.
T Consensus 167 ~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 167 AFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HhccccccHHHHHHHHHhhh
Confidence 8888776 44444444333
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.97 E-value=0.12 Score=48.50 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHH
Q 009506 214 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSEAEAMFNEMLEAG--FEPNLFVL 287 (533)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~ 287 (533)
..|...+..+.+.|++++|...|+.+.+.. |+ ...+..+...|...|++++|...|+.+.+.- -......+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345555555555677777777777766643 33 2455666677777777777777777766531 11123344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 288 TSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 288 ~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
..+...|...|+.++|..+|+++.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555666677777777777766654
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.91 E-value=0.14 Score=48.00 Aligned_cols=97 Identities=9% Similarity=0.042 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYA 182 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~ 182 (533)
..|...+..+.+.|++++|+..|+.+.+. .|+. ..+-.+..+|...|++++|...|+.+.+.- -+.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34666666666778999999999988874 2443 456677788888888888888888888642 111234444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
.+...|...|+.++|..+|+++.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566677778888888888877765
No 202
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.90 E-value=0.056 Score=45.79 Aligned_cols=97 Identities=20% Similarity=0.295 Sum_probs=44.4
Q ss_pred CHHHHHHHHHH---HHHcCChHHHHHHHHHHHHC--C-CCCCH------------------HHHHHHHHHHHhcCChhHH
Q 009506 107 DPNAFSTLIKL---YGTAGNFDGCLNVYEEMKAI--G-VKPNM------------------ITYNNLLDTMGRAKRPWQV 162 (533)
Q Consensus 107 ~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~--g-~~pd~------------------~~~~~li~~~~~~g~~~~a 162 (533)
|...|..++.. ....|+.+.+...++++... | +-++. .+...++..+...|++++|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 34445555433 34567888888888877653 1 11111 1122233333444555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009506 163 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREM 204 (533)
Q Consensus 163 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m 204 (533)
+++.+.+.... +.|...|..+|.+|...|+...|.++|+.+
T Consensus 82 ~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 82 LRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 55555444432 234444555555555555555555444443
No 203
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=1.6 Score=39.95 Aligned_cols=143 Identities=14% Similarity=0.158 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH--
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI-- 256 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li-- 256 (533)
.+.+.++..+.-.+.+.-...++.+.++...+.+......|...-.+.||.+.|...|++.++... +.|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHh
Confidence 355667777777788888889999999888777899999999999999999999999998877654 55666665544
Q ss_pred ---HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 009506 257 ---TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCL 325 (533)
Q Consensus 257 ---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 325 (533)
..|.-.+++..|...|++..... .-|.+..|.=.-+..-.|+..+|++.++.|++. .|...+-+++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 34556778888888888876643 234444443333334468899999999999875 3555544433
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.71 E-value=0.08 Score=38.51 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=25.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
.|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444455555555555544433 23444444444445555555555555554444
No 205
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.69 E-value=2.1 Score=40.96 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH
Q 009506 161 QVKTIYKEMTDNGLSPNWNTYAS 183 (533)
Q Consensus 161 ~a~~~~~~m~~~g~~p~~~~~~~ 183 (533)
+.+.+++.|.+.|+.-+..+|-+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHH
Confidence 34555566666665555554444
No 206
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.68 E-value=2.2 Score=41.31 Aligned_cols=298 Identities=13% Similarity=0.044 Sum_probs=178.4
Q ss_pred HHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHH--HHHH
Q 009506 110 AFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM--GRAKRPWQVKTIYKEMTDNGLSPNWN--TYAS 183 (533)
Q Consensus 110 ~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ 183 (533)
-|.+|-.++. -.|+-..|.++-.+-.+. +.-|....-.|+.+- .-.|+++.|.+-|+.|... |... -...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 3666766664 457888888877765432 334555555555543 3469999999999999852 3221 1223
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHH-
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF--SSMITICS- 260 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~--~~li~~~~- 260 (533)
|.-..-+.|..+.|.+.-+..-+.-.. -...+.+.+...+..|+++.|+++++.-+...++.+|..-- ..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 333445678888888888877665433 35778889999999999999999998877766556664332 23332221
Q ss_pred --hcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh--H
Q 009506 261 --CRGKVSEAEAMFNEMLEAGFEPNLFV-LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK--E 335 (533)
Q Consensus 261 --~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~ 335 (533)
-..+...|...-.+.. .+.||..- -..-..+|.+.|++.++-.+++.+-+....|+.. .+-...+.|+ .
T Consensus 239 s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~ 312 (531)
T COG3898 239 SLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTAL 312 (531)
T ss_pred HHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHH
Confidence 1223444444433332 34566432 2334567889999999999999998776555533 2233456666 3
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh-ccCccchhhHHHHHHHHh-cCCHHHHHHHHHHHHh
Q 009506 336 ELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SKDVKKAYCNCLIDLCVN-LNLLENACKLLELGLT 413 (533)
Q Consensus 336 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~ 413 (533)
.-.+-.+.+....++.....-....+-...|++ ..|..--+.. ...|....|--|.+.-.- .|+-.++...+-+..+
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~-~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEF-SAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccch-HHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 333334444444555443333333333333443 3333322222 224556677777776544 4999999888888766
Q ss_pred ccccCC
Q 009506 414 LEVYTD 419 (533)
Q Consensus 414 ~g~~~~ 419 (533)
.--.|.
T Consensus 392 APrdPa 397 (531)
T COG3898 392 APRDPA 397 (531)
T ss_pred CCCCCc
Confidence 544444
No 207
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.65 E-value=0.54 Score=46.16 Aligned_cols=129 Identities=12% Similarity=0.159 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNG-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 223 (533)
+|...|++..+..-++.|..+|-+..+.| +.+++.+++++|.-++. |+..-|..+|+--...- .-+..--+-.+.-+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f-~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF-PDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 44444444444444444445554444444 33444444444444432 34444444444222210 10111122333334
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 224 ADVGYTDEAFEIFEDMKSSENCQPD--SWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
..-++-+.|..+|+....+ +..+ ...|..+|+--..-|++..+..+=+.|.+
T Consensus 477 i~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4444444455555422211 0111 23444555555555555555544444443
No 208
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.63 E-value=0.89 Score=38.05 Aligned_cols=85 Identities=12% Similarity=0.201 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 191 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 191 (533)
..+|..+.+.+.......+++.+...+. .+...+|.+|..|++.+ ..+.++.++. ..+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 3466666666677777777777666542 56666677777776543 2223333321 11222333355555555
Q ss_pred CChHHHHHHHHHH
Q 009506 192 RYGEDTLSVYREM 204 (533)
Q Consensus 192 g~~~~a~~~~~~m 204 (533)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555444
No 209
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.62 E-value=2.3 Score=41.09 Aligned_cols=106 Identities=15% Similarity=0.105 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009506 250 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 329 (533)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 329 (533)
.+.+..|.-+...|+...|.++-++.. .|+..-|...|.+|+..++|++..++-.. + -.+.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHH
Confidence 345555666777788777777765542 37777788888888888888877765432 1 1235577778888
Q ss_pred hcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHH
Q 009506 330 TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATEL 375 (533)
Q Consensus 330 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~ 375 (533)
.+.|. .+|.+++..+.. .--+..|.++|++ .+|.+.
T Consensus 248 ~~~~~~~eA~~yI~k~~~---------~~rv~~y~~~~~~-~~A~~~ 284 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIPD---------EERVEMYLKCGDY-KEAAQE 284 (319)
T ss_pred HHCCCHHHHHHHHHhCCh---------HHHHHHHHHCCCH-HHHHHH
Confidence 87777 777777666211 2334555666776 444433
No 210
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.74 Score=43.05 Aligned_cols=99 Identities=12% Similarity=0.104 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHHHH
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR---GKVSEAEAMFNEMLEAGFEPNLFVLT 288 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~ 288 (533)
|...|-.|...|...|+.+.|..-|....+.. .++...+..+..++... .+-.++.++|+++.... +-|+.+..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 66667777777777777777777776665543 34444444444443322 23456667777766542 22444555
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 289 SLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5556667777777777777777665
No 211
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.46 E-value=2.5 Score=40.39 Aligned_cols=130 Identities=20% Similarity=0.373 Sum_probs=88.0
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHhcCC-
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD--VG----YTDEAFEIFEDMKSSEN--CQPDSWTFSSMITICSCRGK- 264 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~- 264 (533)
+++...+++.|++.|+.-+..+|-+..-.... .. ....|.++|+.|++... -.++...+..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45568889999999999888777764443333 22 34679999999998642 23467777777666 3333
Q ss_pred ---hHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCCCHHHHHHH
Q 009506 265 ---VSEAEAMFNEMLEAGFEPNL--FVLTSLIQCYGKAQR--TDDVVRALNRLPELGITPDDRFCGCL 325 (533)
Q Consensus 265 ---~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~l 325 (533)
.+.++++|+.+.+.|+..+- .....++..+..... ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 46778889998888876653 333333333322222 45788899999999999888876643
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.45 E-value=0.94 Score=46.55 Aligned_cols=217 Identities=18% Similarity=0.177 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFD--GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
++-.+++.=++|.+-++.. +.+.-+++|+++|-.|+... +...|+-.|++.+|.++|.+ .|.. |..
T Consensus 597 eAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRA 664 (1081)
T KOG1538|consen 597 EALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRA 664 (1081)
T ss_pred hhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhH
Confidence 3445667777887766544 44555677888888888754 34456678888888888864 3422 233
Q ss_pred HHHHHhcCChHHHHHHHHH-------H--HHc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH------HHhCCC--CC
Q 009506 185 LRAYGRARYGEDTLSVYRE-------M--KEK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFED------MKSSEN--CQ 246 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~-------m--~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~~~--~~ 246 (533)
+.+|...+.++.|.+++.. | +++ ....++.-=.+...++...|+.++|..+.-+ +.+.+. -.
T Consensus 665 lEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~ 744 (1081)
T KOG1538|consen 665 LEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDK 744 (1081)
T ss_pred HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcch
Confidence 4555555555555444421 1 110 0000000001233445556666666655311 111110 03
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH------
Q 009506 247 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR------ 320 (533)
Q Consensus 247 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------ 320 (533)
.+..+...+...+.+...+..|.++|..|-+. ..+++.....++|++|+.+-+...+. .||+.
T Consensus 745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqw 813 (1081)
T KOG1538|consen 745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQW 813 (1081)
T ss_pred hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHH
Confidence 34556666666667778888999999887542 34667778889999999988877653 33432
Q ss_pred -----HHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 009506 321 -----FCGCLLNVMTQTPK-EELGKLVECVEK 346 (533)
Q Consensus 321 -----~~~~ll~~~~~~~~-~~a~~~~~~~~~ 346 (533)
-|...-.++.+.|+ .+|.++++++..
T Consensus 814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 23444556667777 777777776554
No 213
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.43 E-value=1.1 Score=37.59 Aligned_cols=85 Identities=11% Similarity=0.140 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009506 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226 (533)
Q Consensus 147 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 226 (533)
..+|..+.+.+........++.+...+ ..+...++.++..|++.+. .+..+.+.. . .+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 345555555566666666666666555 2555666666666665432 222222221 1 1222233355555555
Q ss_pred CCHHHHHHHHHHH
Q 009506 227 GYTDEAFEIFEDM 239 (533)
Q Consensus 227 g~~~~A~~~~~~m 239 (533)
+.++++..++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555444
No 214
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.39 E-value=3.2 Score=41.10 Aligned_cols=128 Identities=13% Similarity=0.034 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCChhHHHHHHHHhhhh
Q 009506 286 VLTSLIQCYGKAQRTDDVVRALNRLPELG-ITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDI 364 (533)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (533)
+|-..|.+..+..-++.|..+|.++.+.| +.++..++++++..++......|.++|+.-....++....+.-....+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 34455666666667788888999988888 56777788888888887766888888888777777776665333333333
Q ss_pred hccHHHHHHHHHhhhc----cCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 365 EGDFKKEATELFNSIS----KDVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 365 ~g~~~~~a~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
.++- +.|..+|+... ..--...|..+|+--..-|++..+..+-+.|...
T Consensus 479 inde-~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 479 INDE-ENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred hCcH-HHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 3544 78888888433 2222458999999888899988887777766543
No 215
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=1 Score=42.18 Aligned_cols=105 Identities=14% Similarity=0.024 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHhhhCCCCCCHHHH
Q 009506 246 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRTDDVVRALNRLPELGITPDDRFC 322 (533)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~ 322 (533)
+-|...|-.|...|...|+++.|..-|.+..+.- .+|...+..+..++... ....++..+|+++..... -|....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence 3455566666666666666666666665554421 13344444444433222 123345555555554321 123344
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHhcCCChh
Q 009506 323 GCLLNVMTQTPK-EELGKLVECVEKSNSKLG 352 (533)
Q Consensus 323 ~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~ 352 (533)
..|...+...|+ .+|...++.|.+..|..+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 444445555555 555555655555544443
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.27 E-value=3.2 Score=42.84 Aligned_cols=95 Identities=11% Similarity=0.098 Sum_probs=51.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHH---------HHHHHCCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHHHH
Q 009506 103 KWRIDPNAFSTLIKLYGTAGNFDGCLNVY---------EEMKAIGVKPNMITYNNLLDTMGRAKRPW--QVKTIYKEMTD 171 (533)
Q Consensus 103 g~~~~~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~g~~pd~~~~~~li~~~~~~g~~~--~a~~~~~~m~~ 171 (533)
.+.+.++.+.+-+..|...|.+++|.++- +.+... ..+.-.++..=.+|.+..+.. +.+.-+++|.+
T Consensus 551 ~i~~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~ 628 (1081)
T KOG1538|consen 551 SISAVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKK 628 (1081)
T ss_pred eeecccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45667777888888888999999887652 111111 123333444445555544432 23333455556
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009506 172 NGLSPNWNTYASLLRAYGRARYGEDTLSVYR 202 (533)
Q Consensus 172 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 202 (533)
+|-.|+.... ...++-.|++.+|-++|.
T Consensus 629 rge~P~~iLl---A~~~Ay~gKF~EAAklFk 656 (1081)
T KOG1538|consen 629 RGETPNDLLL---ADVFAYQGKFHEAAKLFK 656 (1081)
T ss_pred cCCCchHHHH---HHHHHhhhhHHHHHHHHH
Confidence 6655665432 233444566666666653
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.19 E-value=0.057 Score=39.97 Aligned_cols=63 Identities=29% Similarity=0.432 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GVK-PN-MITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-pd-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
..+|+.+...|.+.|++++|+..|++..+. |-. |+ ..+++.+..++...|++++|++.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345777777888888888888888776532 111 11 3455666666667777777776666554
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.15 E-value=0.34 Score=46.97 Aligned_cols=193 Identities=11% Similarity=0.065 Sum_probs=96.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHH--HC--CC-CCCHHHHHHHHHH
Q 009506 117 LYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMT--DN--GL-SPNWNTYASLLRA 187 (533)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~a~~~~~~m~--~~--g~-~p~~~~~~~ll~~ 187 (533)
-++|.|+...-..+|+...+.|.. |. .+|..|-++|.-.+++++|++....=+ .+ |- .-.......|-+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 468899999999999999887743 43 346666677777888888887754321 11 10 0112233334444
Q ss_pred HHhcCChHHHHHHHHH----HHHcCCC-cCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHH----
Q 009506 188 YGRARYGEDTLSVYRE----MKEKGMQ-LSVTLYNTLLAMCADVGYT--------------------DEAFEIFED---- 238 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~----m~~~g~~-~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~---- 238 (533)
+--.|.+++|.-.-.+ ..+.|-+ .....+..|...|...|+. +.|.++|.+
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 4555677777443222 2222211 1233455566666665532 223333321
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 239 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML----EAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 239 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
+.+.|.--.-...|..|.+.|--.|+++.|....+.-. +.|-+. ....+..|-.++.-.|+++.|.+.|+..
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 11111101122334444455555566666665544322 122111 1234555555555666666666665553
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.15 E-value=0.083 Score=39.06 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHH
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~ 274 (533)
++..+...|...|++++|.+.+++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444444444444444
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.05 E-value=0.1 Score=37.90 Aligned_cols=56 Identities=20% Similarity=0.141 Sum_probs=31.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
..|.+.+++++|.++++.+...+.. +...|......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455556666666666666555433 4555555555566666666666666655543
No 221
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.03 E-value=3.3 Score=43.15 Aligned_cols=175 Identities=10% Similarity=0.109 Sum_probs=86.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 009506 140 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSP--------NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 210 (533)
Q Consensus 140 ~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p--------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 210 (533)
.|....|..|.......-.++-|...|-+... .|++. +...-.+=+.+| -|++++|+++|-+|-++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 47777887777665555555555555544332 12211 111111223333 47888888888877665
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 009506 211 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL 290 (533)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 290 (533)
| ..|..+.+.|++-...++++.-.....=.--...|+.+...++....+++|.+.|..-.. . ...
T Consensus 764 -D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~ 828 (1189)
T KOG2041|consen 764 -D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQ 828 (1189)
T ss_pred -h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhH
Confidence 2 235666777777766666543111000001134566666666666666666666644211 0 123
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHH
Q 009506 291 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGK 339 (533)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~ 339 (533)
+.+|.+..++++...+-+.+. -|....-.+..++...|. ++|.+
T Consensus 829 ~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHH
Confidence 444444444444433333332 233344445555555555 44444
No 222
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.93 E-value=0.62 Score=47.23 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=103.7
Q ss_pred HHHHcCChHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 117 LYGTAGNFDGCLNVYE--EMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 194 (533)
Q Consensus 117 ~~~~~g~~~~A~~~~~--~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 194 (533)
...-.|+++++.++.+ ++.. .+ +..-.+.++.-+-+.|..+.|+++-+.-. .-.....++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 3445788888777775 2221 11 24557888888889999999987765432 235666778888
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (533)
+.|.++.++.. +...|..|.+...+.|+++.|++.|++... |..|+-.|.-.|+.+.-.++.+.
T Consensus 335 ~~A~~~a~~~~------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 335 DIALEIAKELD------DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHCCCCS------THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhcC------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHH
Confidence 88887764432 667899999999999999999999887654 66777788888888888888777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 275 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
....|- ++....++...|+.++..+++.+-
T Consensus 399 a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 399 AEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 666552 555666667778888888777654
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.72 E-value=0.83 Score=45.49 Aligned_cols=66 Identities=12% Similarity=0.011 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 140 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW----NTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 140 ~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+.+...|+.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|++++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788999999999999999999999998885 4664 46899999999999999999999999885
No 224
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.69 E-value=4.8 Score=39.56 Aligned_cols=34 Identities=18% Similarity=-0.014 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCh
Q 009506 318 DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 351 (533)
Q Consensus 318 ~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~ 351 (533)
|-.-+.+++.++.-.|+ +.+.+..+++.+..|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 33466778888888888 88888898888776553
No 225
>PRK15331 chaperone protein SicA; Provisional
Probab=94.57 E-value=1.2 Score=38.05 Aligned_cols=88 Identities=11% Similarity=0.063 Sum_probs=63.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 301 (533)
-+...|++++|..+|.-+..-+ .-+..-|..|..+|-..+++++|...|......+. -|...+--.-++|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3456788888888888877655 34555667777777788888888888877654332 34444555677888888888
Q ss_pred HHHHHHHHhhh
Q 009506 302 DVVRALNRLPE 312 (533)
Q Consensus 302 ~a~~~~~~m~~ 312 (533)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888887766
No 226
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.24 E-value=5.7 Score=38.49 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhh
Q 009506 286 VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI 364 (533)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (533)
+.+..|.-+...|+...|.++-++.. .||...|-.-+.+++..++ ++..++... .+.-... ..++..+.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-kKsPIGy----epFv~~~~~ 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-KKSPIGY----EPFVEACLK 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CCCCCCh----HHHHHHHHH
Confidence 44555666667777777777766552 3677778888888888877 666665443 2222222 223333334
Q ss_pred hccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHH
Q 009506 365 EGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLE 409 (533)
Q Consensus 365 ~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 409 (533)
.|+. .+|..++.++. +..-+..|.++|++.+|.+.--
T Consensus 250 ~~~~-~eA~~yI~k~~-------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 250 YGNK-KEASKYIPKIP-------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCCH-HHHHHHHHhCC-------hHHHHHHHHHCCCHHHHHHHHH
Confidence 4553 66777666632 2456677777777777766544
No 227
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.21 E-value=2.5 Score=34.39 Aligned_cols=64 Identities=19% Similarity=0.301 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 280 (533)
..+..++...+.|.-+.-.+++.++.+.+ .++......+..+|.+.|+..++.+++++.-+.|+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444555555566666666665555433 45555555556666666666666666665555553
No 228
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.15 E-value=1.6 Score=41.29 Aligned_cols=116 Identities=6% Similarity=-0.052 Sum_probs=60.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHH
Q 009506 121 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW----NTYASLLRAYGRARYGED 196 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~ 196 (533)
.|++.+|-..++++.+. .+-|...++..=.+|.-.|+.+.-...++++... ..+|. .....+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34555555555555543 3445555555556666666666666666655532 11222 222222333345666666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 197 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 239 (533)
Q Consensus 197 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 239 (533)
|++.-++..+.+.. |...-.++...+-..|++.++.++..+-
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 66666655554322 5555555555566666666666665443
No 229
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.14 E-value=0.3 Score=47.25 Aligned_cols=259 Identities=15% Similarity=0.037 Sum_probs=150.3
Q ss_pred hhHHHHHhhcCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHH--HHC--CCC-CCHHHHHHHHHHHHhcCChhHHHH
Q 009506 93 KSYDTRARNEKW---RIDPNAFSTLIKLYGTAGNFDGCLNVYEEM--KAI--GVK-PNMITYNNLLDTMGRAKRPWQVKT 164 (533)
Q Consensus 93 ~~l~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~--g~~-pd~~~~~~li~~~~~~g~~~~a~~ 164 (533)
-.++...++.|- +.=..+|+.|-.+|.-.++|++|++...-= ..+ |-+ -...+...|-+.+--.|.+++|+-
T Consensus 37 v~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~ 116 (639)
T KOG1130|consen 37 VDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALT 116 (639)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHH
Confidence 344455555552 222345777777777788888888875321 111 100 011223334444555677777654
Q ss_pred HHH----HHHHCCCC-CCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH----HcCCC-cCHH
Q 009506 165 IYK----EMTDNGLS-PNWNTYASLLRAYGRARY--------------------GEDTLSVYREMK----EKGMQ-LSVT 214 (533)
Q Consensus 165 ~~~----~m~~~g~~-p~~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~m~----~~g~~-~~~~ 214 (533)
.-. -..+.|-+ .....+-.|-..|...|+ ++.|.+.|.+=. +.|-. .--.
T Consensus 117 cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGR 196 (639)
T KOG1130|consen 117 CCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGR 196 (639)
T ss_pred HHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcc
Confidence 322 22233311 122345556677765443 233344443211 12211 0123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHH
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDM----KSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE----AG-FEPNLF 285 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~ 285 (533)
.|..|.+.|.-.|+++.|+...+.- ++-|.-......+..+.+++.-.|+++.|.+.|+.-.. .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 5666667777788999998887543 23332123466788999999999999999999987543 22 222345
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhh----CC-CCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCh
Q 009506 286 VLTSLIQCYGKAQRTDDVVRALNRLPE----LG-ITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 351 (533)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~ 351 (533)
+.-+|-..|.-..++++|+.++.+-.. .+ ..-....|-+|-.++...|. +.|..+.+.-.+.....
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev 348 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEV 348 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 666788888888889999998877432 22 22233467778888888887 88888877766554433
No 230
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=94.07 E-value=3.5 Score=35.47 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=65.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 129 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKG 208 (533)
Q Consensus 129 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g 208 (533)
+.+..+.+.++.|+...|..+|+.+.+.|++.. +.++...++-+|.......+-.+.. ....+.++=-.|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 334445556666777777777777777766443 3444455555555444433332222 223333333333322
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 209 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
=...+..++..+...|++-+|+++.+..... +......++.+-.+.+|...-..+|+-..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0113455566666677777777766654322 11222344555555555444444444433
No 231
>PRK15331 chaperone protein SicA; Provisional
Probab=94.01 E-value=1.9 Score=36.77 Aligned_cols=86 Identities=12% Similarity=-0.012 Sum_probs=63.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
-..|++++|..+|.-+.-.++. +..-|..|..+|-..+++++|+..|...-..+ .-|...+-.+..+|...|+.+.|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cCCCCccchHHHHHHHhCCHHHH
Confidence 4568888888888887775544 55566677777777888888888887765544 23444455667788888888888
Q ss_pred HHHHHHHHH
Q 009506 269 EAMFNEMLE 277 (533)
Q Consensus 269 ~~~~~~m~~ 277 (533)
...|....+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888888766
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.97 E-value=0.92 Score=46.01 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
+....+.++..+-+.|..+.|+++-++-. .-.....+.|+++.|.++-++ ..+...|..|.+
T Consensus 294 ~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~ 355 (443)
T PF04053_consen 294 PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGD 355 (443)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHH
Confidence 45568999999999999999999876542 233445679999999876543 347889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
...+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....|. ++....++...|+++
T Consensus 356 ~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-------~n~af~~~~~lgd~~ 419 (443)
T PF04053_consen 356 EALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD-------INIAFQAALLLGDVE 419 (443)
T ss_dssp HHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HH
T ss_pred HHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC-------HHHHHHHHHHcCCHH
Confidence 99999999999999988654 56777788889999999999988888774 666677777788888
Q ss_pred HHHHHHHH
Q 009506 267 EAEAMFNE 274 (533)
Q Consensus 267 ~A~~~~~~ 274 (533)
+..+++.+
T Consensus 420 ~cv~lL~~ 427 (443)
T PF04053_consen 420 ECVDLLIE 427 (443)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.96 E-value=3 Score=42.90 Aligned_cols=145 Identities=18% Similarity=0.177 Sum_probs=87.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcC-----HHHHHHHHHHHHh----cCCHHHH
Q 009506 163 KTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLS-----VTLYNTLLAMCAD----VGYTDEA 232 (533)
Q Consensus 163 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~-----~~~~~~li~~~~~----~g~~~~A 232 (533)
.-+|+-+... ++| .+..++...+-.|+-+.+++.+.+-.+. |+.-. .-.|+.++..++. ..+.+.|
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 4455555543 222 3445666666677777777777665543 22211 2334444444433 3567788
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 233 FEIFEDMKSSENCQPDSWTFSSM-ITICSCRGKVSEAEAMFNEMLEA--G-FEPNLFVLTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~--g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (533)
.++++.+.+. -|+...|... .+.+...|++++|.+.|+..... . -+.....+--+.-++.-..+|++|...|.
T Consensus 253 ~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 253 EELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 8888888775 3666666544 56667788888888888864431 1 11233445556666777888888888888
Q ss_pred HhhhCC
Q 009506 309 RLPELG 314 (533)
Q Consensus 309 ~m~~~g 314 (533)
++.+.+
T Consensus 330 ~L~~~s 335 (468)
T PF10300_consen 330 RLLKES 335 (468)
T ss_pred HHHhcc
Confidence 887653
No 234
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.96 E-value=4.5 Score=36.34 Aligned_cols=170 Identities=11% Similarity=0.001 Sum_probs=86.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc
Q 009506 149 LLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADV 226 (533)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 226 (533)
....+...|++.+|++.|+.+...- -+--....-.++.++.+.|+++.|...++++.+.-..-...-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 3444567888888888888888642 11123455567778888888888888888887753332222233223222211
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009506 227 GYTDEAFEIFEDMKSSENCQPD-------SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 299 (533)
Q Consensus 227 g~~~~A~~~~~~m~~~~~~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 299 (533)
....... . ...| ...|..+|.-|=......+|.+.+..+.+. . ...-..+..-|.+.|.
T Consensus 91 ~~~~~~~-------~---~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~ 156 (203)
T PF13525_consen 91 KQIPGIL-------R---SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGK 156 (203)
T ss_dssp HHHHHHH-----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-
T ss_pred HhCccch-------h---cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHccc
Confidence 1111110 0 0111 123344444555555566666655554331 0 1111235566778888
Q ss_pred hhHHHHHHHHhhhCCCCCCH----HHHHHHHHHHhcCCh
Q 009506 300 TDDVVRALNRLPELGITPDD----RFCGCLLNVMTQTPK 334 (533)
Q Consensus 300 ~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~ 334 (533)
+..|..-++.+.+. -|+. .....++.++.+.|.
T Consensus 157 y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 157 YKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCC
Confidence 88888888777664 2332 244555556666555
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.78 E-value=4.7 Score=35.91 Aligned_cols=228 Identities=13% Similarity=0.042 Sum_probs=130.2
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 121 AGNFDGCLNVYEEMKAIGVK-PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPNWNTYASLLRAYGRARYGEDTL 198 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~-pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~ 198 (533)
.+.+..+...+......... .....+......+...+.+..+...+...... ........+..+...+...+.+..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45566666666665543221 12456666666667777777777666666542 22344555666666666666777777
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 199 SVYREMKEKGMQLSVTLYNTLLA-MCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 199 ~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
..+.......... ......... .+...|+++.|...+++....... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 7777666643332 122222222 567777777777777776442100 0233444444445667777777777777766
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC
Q 009506 277 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 350 (533)
Q Consensus 277 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~ 350 (533)
..........+..+-..+...++.+.+...+......... ....+..+...+...+. +++...+.......+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 5421113566666777777777777777777777654321 12333334444444444 7777777766666665
No 236
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.47 E-value=9.6 Score=38.53 Aligned_cols=182 Identities=12% Similarity=0.104 Sum_probs=127.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 220 (533)
.|....-++|..++.+-+..-+..+-.+|+.-| -+...|-.++..|... .-+.-..+++++.+..+. |++.-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 466677788999998888888999999999865 6788899999999888 667788889988887665 555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 009506 221 AMCADVGYTDEAFEIFEDMKSSENCQP----DSWTFSSMITICSCRGKVSEAEAMFNEMLE-AGFEPNLFVLTSLIQCYG 295 (533)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~ 295 (533)
.-|-+ ++...+..+|......-+.+. =...|.-|+..- ..+.+...++...+.. .|...-.+.+..+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55555 888888888877765442000 122444444321 3567777777777655 455556677777778888
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 009506 296 KAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330 (533)
Q Consensus 296 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 330 (533)
...++++|++++..+.+..-+ |...-..++.-+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEK-DVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHHH
Confidence 999999999999988776422 4444444554443
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=6.8 Score=36.75 Aligned_cols=143 Identities=10% Similarity=0.079 Sum_probs=84.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
......|++.+|..+|+.......+ +...--.+..+|...|+.+.|..++..+..... .........-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhcC
Confidence 3445677888888888777765433 345555677788888888888888887765432 22233333345555555555
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCCHHHHHHHHHHHhcCC
Q 009506 266 SEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-TPDDRFCGCLLNVMTQTP 333 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~ 333 (533)
.+...+-.+.-. .| |...-..+...|...|+.++|.+.+-.+.+.+. .-|...-..|+..+.--|
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 555555444443 25 666667777888888888888886655544321 223333444444444333
No 238
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=7.3 Score=38.25 Aligned_cols=151 Identities=13% Similarity=-0.009 Sum_probs=77.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCCHHHHHH---H------
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI--CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS---L------ 290 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~---l------ 290 (533)
++.-.|++++|.++--.+.+.. ....+...+++ +--.++.+.|...|.+-+..+ |+-..--. +
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld----~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~ 251 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD----ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV 251 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc----cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence 4555677777777666555432 12222333332 234556667777776655432 43322111 1
Q ss_pred ----HHHHHhcCChhHHHHHHHHhhhC---CCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhh
Q 009506 291 ----IQCYGKAQRTDDVVRALNRLPEL---GITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQ 362 (533)
Q Consensus 291 ----i~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (533)
-.-..+.|++..|.+.|.+.+.. ++.++...|.....+..+.|+ .+++.--+...+.++.....+-.-..++
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCH 331 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence 11234567777777777776543 233444455555555556666 6666655555555444333332233444
Q ss_pred hhhccHHHHHHHHHhhh
Q 009506 363 DIEGDFKKEATELFNSI 379 (533)
Q Consensus 363 ~~~g~~~~~a~~~~~~~ 379 (533)
...++| ++|.+-|++.
T Consensus 332 l~le~~-e~AV~d~~~a 347 (486)
T KOG0550|consen 332 LALEKW-EEAVEDYEKA 347 (486)
T ss_pred HHHHHH-HHHHHHHHHH
Confidence 444555 6666665553
No 239
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.29 E-value=8.6 Score=37.49 Aligned_cols=268 Identities=13% Similarity=0.083 Sum_probs=157.5
Q ss_pred CCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 009506 105 RIDPNAFSTLIKLY--GTAGNFDGCLNVYEEMKAIGVKPNMITYN----NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 178 (533)
Q Consensus 105 ~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 178 (533)
..|..-.-.|+.+- .-.|+++.|.+-|+.|.. |..+-- .|.-..-+.|+.+.|...-++.-+.- +--.
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~ 188 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLP 188 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCc
Confidence 33444444444443 347999999999999986 333322 23333346788888888777766542 2334
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCCHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTL--YNTLLAMCA---DVGYTDEAFEIFEDMKSSENCQPDSWTF 252 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 252 (533)
..+.+++...+..|+++.|+++++.-+.. -+++++.- -..|+.+-+ -.-+...|...-.+..+ +.||.+--
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K---L~pdlvPa 265 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK---LAPDLVPA 265 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh---cCCccchH
Confidence 77889999999999999999999977653 23444322 223332211 12345555555544444 36664433
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCHH-HHHHHHHHH
Q 009506 253 -SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITPDDR-FCGCLLNVM 329 (533)
Q Consensus 253 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~-~~~~ll~~~ 329 (533)
......+.+.|+..++-.+++.+-+.. |....+. .|.+..--|.++.-+++.... .++||.. ..-.+..+-
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~----lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aA 339 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL----LYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAA 339 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH----HHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 344678899999999999999998864 5544432 344444444455545444332 2445543 445566666
Q ss_pred hcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhh
Q 009506 330 TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYC 388 (533)
Q Consensus 330 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~ 388 (533)
...|+ ..+..-.+......|....+.-+--..-...|+. .++...+-+....|..+.|
T Consensus 340 lda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDq-g~vR~wlAqav~APrdPaW 398 (531)
T COG3898 340 LDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQ-GKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred HhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCch-HHHHHHHHHHhcCCCCCcc
Confidence 66666 5555555555566665554432222223344665 6777777665544433333
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=6.4 Score=35.84 Aligned_cols=209 Identities=16% Similarity=0.150 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
...|..-..+|....++++|...+.+..+ +.+-|...|+ ....++.|.-+.++|.+. .--+..|+-...+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 45577777888888999998887766653 1222333332 233456666666776653 1223567777888
Q ss_pred HHhcCChHHHHHHHHHHHHc--CCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 188 YGRARYGEDTLSVYREMKEK--GMQLSV--TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~--g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
|..+|..+-|-..+++.-+. +..|+. ..|.--+......++...|.+ .|..+-+++.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~e----------------l~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFE----------------LYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHH----------------HHHHhhhHhhhhH
Confidence 89999988887777655431 233332 122222222222222222222 3344455677777
Q ss_pred ChHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhhCC---CCCCHHHHHHHHHHHhcCChH
Q 009506 264 KVSEAEAMFNEMLEA----GFEPNL-FVLTSLIQCYGKAQRTDDVVRALNRLPELG---ITPDDRFCGCLLNVMTQTPKE 335 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~ 335 (533)
.+++|-..|.+-... .-.++. ..|...|-.|....++..|...+++--+.+ -.-|..+...||.+|-....+
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E 244 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIE 244 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHH
Confidence 777776665543211 111222 345566667777788999999998854432 233455888888888765556
Q ss_pred HHHHHHH
Q 009506 336 ELGKLVE 342 (533)
Q Consensus 336 ~a~~~~~ 342 (533)
++.+++.
T Consensus 245 ~~~kvl~ 251 (308)
T KOG1585|consen 245 EIKKVLS 251 (308)
T ss_pred HHHHHHc
Confidence 6666554
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.21 E-value=9.9 Score=39.16 Aligned_cols=161 Identities=16% Similarity=0.139 Sum_probs=91.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNM-----ITYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPNWNT 180 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~-----~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~ 180 (533)
+..++...+=.|+-+.+++++.+..+. ++.-.. -.|+..+..++. ..+.+.|.++++.+.++ -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 445566666678888888888776543 222111 234444444433 34566788888888775 366655
Q ss_pred HHHH-HHHHHhcCChHHHHHHHHHHHHcCC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009506 181 YASL-LRAYGRARYGEDTLSVYREMKEKGM---QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 256 (533)
Q Consensus 181 ~~~l-l~~~~~~g~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 256 (533)
|... -+.+...|++++|++.|++...... ......+--+.-.+.-.+++++|.+.|..+.+.. .....+|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~WSka~Y~Y~~ 346 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--ccHHHHHHHHH
Confidence 5443 3445567888888888886543110 1122334444555666777777777777777654 33444444333
Q ss_pred HH-HHhcCCh-------HHHHHHHHHH
Q 009506 257 TI-CSCRGKV-------SEAEAMFNEM 275 (533)
Q Consensus 257 ~~-~~~~g~~-------~~A~~~~~~m 275 (533)
.+ +...|+. ++|.++|.+.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 32 3345555 5666666554
No 242
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=93.02 E-value=0.53 Score=35.30 Aligned_cols=70 Identities=24% Similarity=0.369 Sum_probs=45.4
Q ss_pred cccccChhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeeccccccchhHHHHHHHHhhhcCCCCCC---------CCC
Q 009506 431 HLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHD---------SPD 501 (533)
Q Consensus 431 ~l~~~~~g~~~~a~~~~~~~l~~~~~~g~~~p~~~~i~~~~~~~~~~~~~l~~~~~~~L~~~~~~f~~---------~~~ 501 (533)
+++++....|...+..++.... ..+. ..+.|+||.|.|+... .++..+...|.+ +..+.. ...
T Consensus 2 DLHG~~~~eA~~~l~~~l~~~~---~~~~---~~~~II~G~G~hS~~g-~Lk~~V~~~L~~-~~~~~~v~~~~~~~~~~g 73 (83)
T PF01713_consen 2 DLHGLTVEEALRALEEFLDEAR---QRGI---RELRIITGKGNHSKGG-VLKRAVRRWLEE-GYQYEEVLAYRDAEPEDG 73 (83)
T ss_dssp E-TTS-HHHHHHHHHHHHHHHH---HTTH---SEEEEE--STCTCCTS-HHHHHHHHHHHH-THCCTTEEEEEE--CCCT
T ss_pred CCCCCcHHHHHHHHHHHHHHHH---HcCC---CEEEEEeccCCCCCCC-cHHHHHHHHHHh-hhccchhheeeecCCCCC
Confidence 5778888777777766654443 3332 4578999999998764 489999999987 544444 345
Q ss_pred CcceEEE
Q 009506 502 KVGWFLT 508 (533)
Q Consensus 502 ~~g~~~~ 508 (533)
|.|+++.
T Consensus 74 ~~G~~~V 80 (83)
T PF01713_consen 74 NSGATIV 80 (83)
T ss_dssp GGGEEEE
T ss_pred CCeEEEE
Confidence 7888764
No 243
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.82 E-value=1.4 Score=41.30 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHH
Q 009506 214 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE-----AGFEPNLFVLT 288 (533)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 288 (533)
.++..++..+...|+.+.+.+.++++.... +-|...|..+|.+|.+.|+...|.+.|+++.+ .|+.|...+..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 455556666666777777777777766654 45666777777777777777777777766543 35555554444
Q ss_pred HHHH
Q 009506 289 SLIQ 292 (533)
Q Consensus 289 ~li~ 292 (533)
...+
T Consensus 232 ~y~~ 235 (280)
T COG3629 232 LYEE 235 (280)
T ss_pred HHHH
Confidence 4333
No 244
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.79 E-value=5.8 Score=34.14 Aligned_cols=133 Identities=13% Similarity=0.138 Sum_probs=87.5
Q ss_pred hhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHH
Q 009506 93 KSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK--RPWQVKTIYKEMT 170 (533)
Q Consensus 93 ~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g--~~~~a~~~~~~m~ 170 (533)
.+..+.+.+.++.|+...|..+|+.+.+.|++..... +...++-+|.......+-.+.... -..-|++++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4556667788999999999999999999999766544 445556677666655554443322 1233555555554
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
. .+..+++.+...|++-+|.++....... +......++.+-.+.+|...-..+|+-...
T Consensus 90 ~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 T--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 4667788888999999999988775332 223334566676676766555555544443
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=8.6 Score=36.11 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=23.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 119 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
...|++.+|..+|+......- -+...--.+..+|...|+.+.|..++..+-
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 344555555555555543311 122233344455555555555555555443
No 246
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.75 E-value=11 Score=37.45 Aligned_cols=272 Identities=15% Similarity=0.187 Sum_probs=142.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--H
Q 009506 118 YGTAGNFDGCLNVYEEMKAIGVKPN------MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY--G 189 (533)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~g~~pd------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~ 189 (533)
+-+.+++.+|.++|.++-+.. ..+ ...-+.+|++|.. ++.+.....+....+. .| ...|-.|..+. -
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 347788889998888876541 222 2334567777764 3455555555555543 12 23344444432 3
Q ss_pred hcCChHHHHHHHHHHHHc--CCCc------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCCHHHH
Q 009506 190 RARYGEDTLSVYREMKEK--GMQL------------SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN---CQPDSWTF 252 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~--g~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~p~~~~~ 252 (533)
+.+.+++|.+.+..-.+. +..+ |-..=+..+..+...|++.++..+++++...-. +.-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 667888888887766654 3222 122234455667777888888777777765432 13567777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 009506 253 SSMITICSCRGKVSEAEAMFNEMLE---AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVM 329 (533)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 329 (533)
+.++-++++. .|-++.+ ..+.|+ |-.+|-.|.+. ...++.-.-..+.|....+..++...
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kk------i~~~d~~~Y~k~~peeeL~s~imqhl 233 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQHL 233 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHHH
Confidence 7766555542 2323322 122222 22223233221 01111111113445556666666655
Q ss_pred hcCCh---HHHHHHHHHHHh--cCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-------CccchhhHHHHHHHHh
Q 009506 330 TQTPK---EELGKLVECVEK--SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-------DVKKAYCNCLIDLCVN 397 (533)
Q Consensus 330 ~~~~~---~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-------~~~~~~~~~li~~~~~ 397 (533)
.-... .--.++++...+ .+|+.+.++..|.....+.+ +++..+-+.+.. +.-...+..++....+
T Consensus 234 fi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~---e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 234 FIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDP---EQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcCh---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 54444 222223333322 46666666666655554422 333333222211 1123377888888899
Q ss_pred cCCHHHHHHHHHHHHhc
Q 009506 398 LNLLENACKLLELGLTL 414 (533)
Q Consensus 398 ~g~~~~A~~l~~~m~~~ 414 (533)
.++..+|-..+..+...
T Consensus 311 ~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHhHHHHHHHHHHHHhc
Confidence 99999988877766544
No 247
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.51 E-value=5 Score=32.74 Aligned_cols=68 Identities=22% Similarity=0.221 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 009506 248 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 316 (533)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 316 (533)
+.......++...+.|.-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++-+++++.-+.|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3344455666677777777777777776542 2466777777777777777777777777777777643
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.45 E-value=2.4 Score=41.44 Aligned_cols=138 Identities=14% Similarity=0.115 Sum_probs=83.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 194 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 194 (533)
-+.|.+.|++..|..-|++.... |. |.+.-+.++... ... .-..+++.|.-+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~-~~~-------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKK-AEA-------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHH-HHH-------HHHHHhhHHHHHHHhhhhH
Confidence 35678889999999998886542 00 000111122111 111 1224566777777888888
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH-HHHHHHHhcCCh-HHHHHHH
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS-SMITICSCRGKV-SEAEAMF 272 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~g~~-~~A~~~~ 272 (533)
..|++.-...++.+.. |+-..---..+|...|+++.|+..|+.+.+. .|+...-. -|+..--+.... +...++|
T Consensus 274 ~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~---~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL---EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred HHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777777766543 6666666677788888888888888888774 45444443 444443344433 3446777
Q ss_pred HHHHH
Q 009506 273 NEMLE 277 (533)
Q Consensus 273 ~~m~~ 277 (533)
..|..
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 77765
No 249
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.17 E-value=5.2 Score=42.73 Aligned_cols=180 Identities=13% Similarity=0.150 Sum_probs=116.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT----MGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 182 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~----~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 182 (533)
......+-|+.+.+...++-|+.+-+.-. .|..+...+... +.+.|++++|..-|-+-... +.|.
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s----- 401 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS----- 401 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----
Confidence 44456677888888888888887765532 344444444444 45789999998888766532 2332
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 262 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (533)
.+|.-|....+...-...++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|...-| ....+..+.+.
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~s 476 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKS 476 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHh
Confidence 3466666777777778888888888887 66777889999999999988888776654 3321112 34556666666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 263 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 263 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
+-.++|..+-.... .+......++ -..+++++|++++..|
T Consensus 477 nyl~~a~~LA~k~~-----~he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 477 NYLDEAELLATKFK-----KHEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred ChHHHHHHHHHHhc-----cCHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 66666666644432 2333333333 3456777777776655
No 250
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.17 E-value=2 Score=40.25 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCcCHHHHHH
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-----KGMQLSVTLYNT 218 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~ 218 (533)
.++..++..+...|+++.+...++++.... +-|...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 367788888888888888888888888764 56788888899999999998888888887765 588888888777
Q ss_pred HHHHHH
Q 009506 219 LLAMCA 224 (533)
Q Consensus 219 li~~~~ 224 (533)
......
T Consensus 233 y~~~~~ 238 (280)
T COG3629 233 YEEILR 238 (280)
T ss_pred HHHHhc
Confidence 776633
No 251
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=2.8 Score=40.97 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HH
Q 009506 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTS-LI 291 (533)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li 291 (533)
..+++.|.-+|.+.+++.+|++.-+.....+ ++|....---..+|...|+++.|+..|+.+.+. .|+...... |+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~ 332 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELI 332 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 4567788889999999999999999998876 678888888899999999999999999999884 576555554 44
Q ss_pred HHHHhcCChh-HHHHHHHHhhhC
Q 009506 292 QCYGKAQRTD-DVVRALNRLPEL 313 (533)
Q Consensus 292 ~~~~~~g~~~-~a~~~~~~m~~~ 313 (533)
.+--+..+.. ...++|..|...
T Consensus 333 ~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444444443 446788888653
No 252
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.15 E-value=18 Score=38.17 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIFE 237 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (533)
+....-.+..++...|.-++|.+.|-
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHH
Confidence 34444455555555555555555543
No 253
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.81 E-value=6.1 Score=32.17 Aligned_cols=93 Identities=11% Similarity=0.131 Sum_probs=70.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcC
Q 009506 116 KLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT---YASLLRAYGRAR 192 (533)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~g 192 (533)
-+++..|+++.|++.|.+.... .+-....||.-..++--.|+.++|++=+++.++..-.-+... |.---..|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3567889999999999998764 234778899999999999999999999998887432223333 333344577789
Q ss_pred ChHHHHHHHHHHHHcCC
Q 009506 193 YGEDTLSVYREMKEKGM 209 (533)
Q Consensus 193 ~~~~a~~~~~~m~~~g~ 209 (533)
+.+.|..=|+..-+.|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999888888777663
No 254
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.80 E-value=0.0063 Score=51.47 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=22.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009506 151 DTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYR 202 (533)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 202 (533)
..+.+.+.+......++.+...+-.-+....+.++..|++.++.+...++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3333444444444444444444333344445555555555544444444443
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.68 E-value=5.1 Score=38.16 Aligned_cols=153 Identities=7% Similarity=0.013 Sum_probs=109.3
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHhcCCHHH
Q 009506 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK---GMQLSVTLYNTLLAMCADVGYTDE 231 (533)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~ 231 (533)
..|++.+|-..++++++. .+.|...+...=++|.-.|+.+.-...++++... +++....+-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 467888888888888865 5778888888889999999999998888888764 222223333334455668899999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 232 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA---GFEPNLFVLTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 232 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (533)
|++.-++..+.+ +.|...-.++...+-..|+..++.+...+-.+. +.-.-..-|--..-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralqiN--~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQIN--RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccCC--CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999988876 678888888999999999999999887664321 100011112222233455689999999987
Q ss_pred Hh
Q 009506 309 RL 310 (533)
Q Consensus 309 ~m 310 (533)
.-
T Consensus 272 ~e 273 (491)
T KOG2610|consen 272 RE 273 (491)
T ss_pred HH
Confidence 63
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.16 E-value=2.6 Score=38.98 Aligned_cols=98 Identities=18% Similarity=0.201 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC-CHHHHHHHH
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEP-NLFVLTSLI 291 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~~~~~li 291 (533)
.|+.-+..| +.|++.+|...|....+.+-- .-....+-.|...+...|++++|..+|..+.+. +-.| -..++--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455544443 345566666666666554310 012334556667777777777777777666552 1111 135555666
Q ss_pred HHHHhcCChhHHHHHHHHhhhC
Q 009506 292 QCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
.+..+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666777777777777776554
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=91.01 E-value=19 Score=36.30 Aligned_cols=157 Identities=12% Similarity=0.129 Sum_probs=90.8
Q ss_pred HHH--HHHHHHHHhcC-----ChHHHHHHHHHHHH-cCCCcC-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHH
Q 009506 179 NTY--ASLLRAYGRAR-----YGEDTLSVYREMKE-KGMQLS-VTLYNTLLAMCA---------DVGYTDEAFEIFEDMK 240 (533)
Q Consensus 179 ~~~--~~ll~~~~~~g-----~~~~a~~~~~~m~~-~g~~~~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~ 240 (533)
..| ..++++..... ..+.|+.+|.+... ..+.|+ ...|..+-.++. ...+..+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55666655522 34567778887772 223443 233333222211 1234566777777777
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009506 241 SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 319 (533)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 319 (533)
+.+ +.|......+..+....++++.|..+|++.... .|| ..+|...-....-+|+.++|.+.+++..+. .|..
T Consensus 332 eld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~ 405 (458)
T PRK11906 332 DIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRR 405 (458)
T ss_pred hcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--Cchh
Confidence 766 567777777777777777888888888887664 355 334444444445578888888888875543 2332
Q ss_pred H---HHHHHHHHHhcCChHHHHHHH
Q 009506 320 R---FCGCLLNVMTQTPKEELGKLV 341 (533)
Q Consensus 320 ~---~~~~ll~~~~~~~~~~a~~~~ 341 (533)
. .....+..|...+-+++.+++
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 406 RKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred hHHHHHHHHHHHHcCCchhhhHHHH
Confidence 2 333334455555555555544
No 258
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.80 E-value=24 Score=37.24 Aligned_cols=149 Identities=14% Similarity=0.101 Sum_probs=95.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHH--HHHH-HHhcCChHHHHHHHHHHHH-------cCCCcCHHHHHHHHHHHHhcC-
Q 009506 159 PWQVKTIYKEMTDNGLSPNWNTYAS--LLRA-YGRARYGEDTLSVYREMKE-------KGMQLSVTLYNTLLAMCADVG- 227 (533)
Q Consensus 159 ~~~a~~~~~~m~~~g~~p~~~~~~~--ll~~-~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g- 227 (533)
...+.+.++...+.|. ......-. ...+ +....+.+.|...|+...+ .| +....+-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567888888777762 11222222 2223 4567888999999988866 44 3335566666776643
Q ss_pred ----CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCh
Q 009506 228 ----YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC-RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG--KAQRT 300 (533)
Q Consensus 228 ----~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~ 300 (533)
+.+.|..++......| .|+...+-..+..... ..+...|.++|......|.. ...-+..++...+ ...+.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCH
Confidence 6778999999888887 5776666555544444 45678999999998887742 2222222222222 34567
Q ss_pred hHHHHHHHHhhhCC
Q 009506 301 DDVVRALNRLPELG 314 (533)
Q Consensus 301 ~~a~~~~~~m~~~g 314 (533)
..|..++++..+.|
T Consensus 381 ~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHHcc
Confidence 88888888888887
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=90.38 E-value=22 Score=36.05 Aligned_cols=83 Identities=4% Similarity=0.057 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 256 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 256 (533)
..+-..|..++.+.|+.++|.+.|.+|.+.... -...+...||.++...+.+.++..++.+-.+....+.-...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344455677777889999999999998764322 2455777899999999999999999988765432122355676655
Q ss_pred HHHH
Q 009506 257 TICS 260 (533)
Q Consensus 257 ~~~~ 260 (533)
--+.
T Consensus 339 LkaR 342 (539)
T PF04184_consen 339 LKAR 342 (539)
T ss_pred HHHH
Confidence 4333
No 260
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.37 E-value=24 Score=37.85 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=29.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 156 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 156 (533)
.+|-.|.|+|++++|.++..+..+. .......+-..+..|...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4777788999999999999555432 334445666777777654
No 261
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.18 E-value=15 Score=33.83 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=30.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 254 SMITICSCRGKVSEAEAMFNEMLEAGFEPN---LFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
.+.+.|.+.|.+..|..-+++|.+. .+-+ ...+-.|..+|.+.|..++|...-.-+
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 3445566666776666666666664 2111 223444555666666666665544443
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.11 E-value=9.1 Score=31.21 Aligned_cols=53 Identities=11% Similarity=0.027 Sum_probs=24.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 153 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 206 (533)
++..|+.+.|++.|.+.+.. .+-+...||.-..+|.-.|+.++|++=+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555444432 123344445444555444555544444444443
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=90.03 E-value=1.1 Score=28.66 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=6.5
Q ss_pred HHHhcCChHHHHHHHHHH
Q 009506 187 AYGRARYGEDTLSVYREM 204 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m 204 (533)
.|.+.|++++|+++|++.
T Consensus 10 ~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 10 AYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 333333333333333333
No 264
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.90 E-value=6.6 Score=36.39 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCCHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQ--LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSM 255 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p~~~~~~~l 255 (533)
..|+.-+..| +.|++..|.+.|...++.... -....+--|...+...|++++|..+|..+.+... .+.-...+--|
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 3577776655 567788999988888876432 1233455577888888999999988888776531 01124566667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc
Q 009506 256 ITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 256 i~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
.....+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77778888999999999888764
No 265
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.80 E-value=31 Score=36.79 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=78.2
Q ss_pred HHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHH
Q 009506 267 EAEAMFNEMLE-AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 267 ~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~ 344 (533)
+-+++.+.+.. .|..-..-+.+.-+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..++ ++.+++.+..
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk 741 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK 741 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 33444444443 2333444455555666667788888887776664 3677777777777877777 6666665544
Q ss_pred HhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009506 345 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 410 (533)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 410 (533)
.. -.... -++..+.+.|+. ++|.+++-+....+ -...+|.+.|++.+|.++--+
T Consensus 742 ks-PIGy~----PFVe~c~~~~n~-~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 742 KS-PIGYL----PFVEACLKQGNK-DEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred CC-CCCch----hHHHHHHhcccH-HHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 31 11122 233444455665 88888877765422 577788888888888776543
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.69 E-value=0.84 Score=27.80 Aligned_cols=25 Identities=24% Similarity=0.646 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEM 134 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m 134 (533)
+|+.|...|.+.|++++|+++|++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3566677777777777777777764
No 267
>PRK11906 transcriptional regulator; Provisional
Probab=89.54 E-value=24 Score=35.54 Aligned_cols=75 Identities=11% Similarity=0.031 Sum_probs=33.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 238 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (533)
|.++-++..+.+ +-|......+..+..-.++++.|...|++....+.. ...+|....-.+.-.|+.++|.+.+++
T Consensus 323 a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 323 ALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444443 334444444444444445555555555555444222 222333333333334555555555555
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.42 E-value=1.5 Score=28.03 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 216 YNTLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
|..+...|...|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555555555543
No 269
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.37 E-value=31 Score=36.47 Aligned_cols=182 Identities=18% Similarity=0.130 Sum_probs=117.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhc
Q 009506 124 FDGCLNVYEEMKAIGVKPNMITYNNLLDT-----MGRAKRPWQVKTIYKEMTD-------NGLSPNWNTYASLLRAYGRA 191 (533)
Q Consensus 124 ~~~A~~~~~~m~~~g~~pd~~~~~~li~~-----~~~~g~~~~a~~~~~~m~~-------~g~~p~~~~~~~ll~~~~~~ 191 (533)
...|.++++.....| +...-..+... ++...+.+.|+..|+.+.+ .| +.....-+-.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567888888887765 33332223222 4466789999999999877 55 334566677777764
Q ss_pred C-----ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--hcC
Q 009506 192 R-----YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD-VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS--CRG 263 (533)
Q Consensus 192 g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~--~~g 263 (533)
. +.+.|..++...-+.|.. +....-..+..... ..+...|.++|...-..|. ++..-+..++-... -..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--ILAIYRLALCYELGLGVER 378 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhCCCcCC
Confidence 3 567799999888888754 54444433333333 3568899999999998884 44444444433333 345
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 316 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 316 (533)
+...|..++++..+.| .|-..--...+..+.. ++.+.+.-.+..+.+.|..
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 7889999999988877 3333333334444444 7777777777777766544
No 270
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=24 Score=34.89 Aligned_cols=187 Identities=11% Similarity=0.062 Sum_probs=108.7
Q ss_pred CCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCcCH----
Q 009506 141 PNMITYNNLLD-TMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY--GRARYGEDTLSVYREMKEKGMQLSV---- 213 (533)
Q Consensus 141 pd~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~g~~~~~---- 213 (533)
|...+|-.|-. ++...|+.++|.++=-..++.. ....+..++++. --.++.+.+..-|++-+..+.....
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 44445544432 3456778888777766665532 112333334332 2356777788778777665432110
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 009506 214 -------TLYNTLLAMCADVGYTDEAFEIFEDMKSSE--NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL 284 (533)
Q Consensus 214 -------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 284 (533)
..+..=.+...+.|++.+|.+.+.+..... ..+++...|.....+..+.|+.++|..--++... .|.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~ 318 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDS 318 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCH
Confidence 111222244567889999999998776532 1255667777888888889999999888877765 343
Q ss_pred HH---HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC-HHHHHHHHHHHhcCCh
Q 009506 285 FV---LTSLIQCYGKAQRTDDVVRALNRLPELGITPD-DRFCGCLLNVMTQTPK 334 (533)
Q Consensus 285 ~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 334 (533)
.- |..-..++...++|++|.+-|+...+..-.+. ..++.....++.+..+
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR 372 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR 372 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence 32 22223355566888888888888766533322 2244444444444433
No 271
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.17 E-value=5.7 Score=34.77 Aligned_cols=62 Identities=11% Similarity=0.135 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS--VTLYNTLLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~ 240 (533)
..+..+...|.+.|+.+.|.+.|.++.+....+. ...+-.+|......+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455555666666666666666666655433222 2334455555555566665555554443
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.09 E-value=0.83 Score=27.82 Aligned_cols=26 Identities=23% Similarity=0.088 Sum_probs=22.3
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 387 YCNCLIDLCVNLNLLENACKLLELGL 412 (533)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~l~~~m~ 412 (533)
+|+.|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999999865
No 273
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.05 E-value=18 Score=33.26 Aligned_cols=171 Identities=15% Similarity=0.136 Sum_probs=84.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH---hc-
Q 009506 224 ADVGYTDEAFEIFEDMKSSENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLEA-GFEPNLFVLTSLIQCYG---KA- 297 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~---~~- 297 (533)
.+.|++++|.+.|+.+.......| ...+.-.++-++-+.+++++|...+++.... +-.||. -|-.-|.++. ..
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCC
Confidence 456777777777777765432111 2344455566666777777777777776553 222222 2222233322 11
Q ss_pred ---CChh---HHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHH
Q 009506 298 ---QRTD---DVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKK 370 (533)
Q Consensus 298 ---g~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 370 (533)
.+.. +|..-|+++++. -||.. - ..|..-+..+ +-.+...--.++..|.+.|.+ .
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~---~d~LA~~Em~IaryY~kr~~~-~ 184 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKL---NDALAGHEMAIARYYLKRGAY-V 184 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHH---HHHHHHHHHHHHHHHHHhcCh-H
Confidence 1222 222233333221 12211 1 1111111111 111111113456667777776 5
Q ss_pred HHHHHHhhhccCc-----cchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 371 EATELFNSISKDV-----KKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 371 ~a~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
.|..-|+.+.+.. .....-.|..+|...|..++|.+.-+-+...
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 5555556554321 1235667888999999999998877665443
No 274
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.82 E-value=4.3 Score=31.06 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=34.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 158 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+.-++.+-++.+....+.|++.+..+.+++|.|.+++..|.++|+-.+.+
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33455666666666667777777777777777777777777777766643
No 275
>PRK09687 putative lyase; Provisional
Probab=87.74 E-value=26 Score=33.32 Aligned_cols=222 Identities=11% Similarity=0.045 Sum_probs=125.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHCCCCCCHHH
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP----WQVKTIYKEMTDNGLSPNWNT 180 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~~ 180 (533)
.+|..+....+..+.+.|. +++...+..+.. .+|...-...+.+++..|+. .++..++..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4566677777777777764 334444444443 25666666677777777764 3566666666433 366666
Q ss_pred HHHHHHHHHhcCCh-----HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009506 181 YASLLRAYGRARYG-----EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM 255 (533)
Q Consensus 181 ~~~ll~~~~~~g~~-----~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l 255 (533)
-...+.+++..+.- ..+...+..... .++..+-...+.++++.++ +++...+-.+.+ .+|...-...
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~----d~~~~VR~~A 179 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLK----DPNGDVRNWA 179 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhc----CCCHHHHHHH
Confidence 66666666655422 122333322222 2255555666777777766 455565555554 3444455555
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh
Q 009506 256 ITICSCRG-KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334 (533)
Q Consensus 256 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 334 (533)
+.++.+.+ +-..+...+..+.. .+|..+-...+.++++.|+. .++..+-+..+.+. .....+.++...|.
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~ 250 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCC
Confidence 55555543 23455555555554 35667777777777777774 44444444444322 23356677777777
Q ss_pred HHHHHHHHHHHhcCC
Q 009506 335 EELGKLVECVEKSNS 349 (533)
Q Consensus 335 ~~a~~~~~~~~~~~~ 349 (533)
.++...+..+.+..+
T Consensus 251 ~~a~p~L~~l~~~~~ 265 (280)
T PRK09687 251 KTLLPVLDTLLYKFD 265 (280)
T ss_pred HhHHHHHHHHHhhCC
Confidence 666666666655444
No 276
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=87.56 E-value=19 Score=31.72 Aligned_cols=192 Identities=15% Similarity=0.037 Sum_probs=90.3
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 009506 157 KRPWQVKTIYKEMTDNGLS-PNWNTYASLLRAYGRARYGEDTLSVYREMKEK-GMQLSVTLYNTLLAMCADVGYTDEAFE 234 (533)
Q Consensus 157 g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (533)
+....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+.+..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444433211 12445555555555666666665555555431 122244445555555555555666666
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009506 235 IFEDMKSSENCQPDSWTFSSMIT-ICSCRGKVSEAEAMFNEMLEAGF--EPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 311 (533)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 311 (533)
.+........ .+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.+..
T Consensus 117 ~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDP-DP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCC-Cc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 6665554331 11 122222222 55566666666666666533110 0122333333333455566666666666655
Q ss_pred hCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC
Q 009506 312 ELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 350 (533)
Q Consensus 312 ~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~ 350 (533)
..........+..+...+...+. +.+...+.......+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 43211123444445555555554 5555555555554444
No 277
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.26 E-value=57 Score=36.84 Aligned_cols=30 Identities=13% Similarity=0.080 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHH
Q 009506 140 KPNMITYNNLLDTMGRAK--RPWQVKTIYKEMT 170 (533)
Q Consensus 140 ~pd~~~~~~li~~~~~~g--~~~~a~~~~~~m~ 170 (533)
.|+ .-.-.+|.+|++.+ ..++++....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344 33345666666665 4555555555554
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.21 E-value=10 Score=33.21 Aligned_cols=94 Identities=16% Similarity=0.089 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCcCH----HH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW--NTYASLLRAYGRARYGEDTLSVYREMKEK---GMQLSV----TL 215 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~~~~----~~ 215 (533)
.+..+..-|.+.|+.+.|++.|.++.+....+.. ..+-.+|+.....+++..+...+.+.... |-..+. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555555666666666666666666554333322 33445555555666666665555544332 111111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 216 YNTLLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~m~ 240 (533)
|..| .+...+++.+|-+.|-+..
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHccC
Confidence 2211 1233567777777775544
No 279
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.17 E-value=51 Score=35.70 Aligned_cols=139 Identities=19% Similarity=0.245 Sum_probs=68.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009506 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 302 (533)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 302 (533)
+.+.|++++|..-+-+-.. .+.|. .+|.-|.....+..-..+++.+.+.|+ .+...-+.|+.+|.+.++.++
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~--~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIG--FLEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHhcCCHHHHHHHHHHHcc--cCChH-----HHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHH
Confidence 3455666666555533321 12222 234444444445555555566666654 344445566667777776666
Q ss_pred HHHHHHHhhhCCCC-CCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhc
Q 009506 303 VVRALNRLPELGIT-PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSIS 380 (533)
Q Consensus 303 a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~ 380 (533)
..++.+..- .|.. .|. ...+..|.+.+- ++|..+...... ...++..++. ..++. ++|+.++..++
T Consensus 450 L~efI~~~~-~g~~~fd~---e~al~Ilr~snyl~~a~~LA~k~~~----he~vl~ille---~~~ny-~eAl~yi~slp 517 (933)
T KOG2114|consen 450 LTEFISKCD-KGEWFFDV---ETALEILRKSNYLDEAELLATKFKK----HEWVLDILLE---DLHNY-EEALRYISSLP 517 (933)
T ss_pred HHHHHhcCC-CcceeeeH---HHHHHHHHHhChHHHHHHHHHHhcc----CHHHHHHHHH---HhcCH-HHHHHHHhcCC
Confidence 666555544 2322 132 234455555555 555544433222 1122222222 22444 77777777776
Q ss_pred c
Q 009506 381 K 381 (533)
Q Consensus 381 ~ 381 (533)
.
T Consensus 518 ~ 518 (933)
T KOG2114|consen 518 I 518 (933)
T ss_pred H
Confidence 4
No 280
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=85.51 E-value=20 Score=29.89 Aligned_cols=75 Identities=11% Similarity=0.020 Sum_probs=48.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 116 KLYGTAGNFDGCLNVYEEMKAIGV--KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
....+.|++++|.+.|+.+..+-. +-....--.|+.+|.+.+++++|...+++.++..-.--..-|...+.+++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 334467888888888888876511 112334456778888888888888888888875321112455555665544
No 281
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=85.50 E-value=55 Score=36.98 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=9.6
Q ss_pred HhcCChhHHHHHHHHHH
Q 009506 154 GRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 154 ~~~g~~~~a~~~~~~m~ 170 (533)
..+.|+.+-+-+++++.
T Consensus 862 ~SqkDPkEyLP~L~el~ 878 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNELK 878 (1265)
T ss_pred HhccChHHHHHHHHHHh
Confidence 34556666665665555
No 282
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.22 E-value=2.4 Score=25.12 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKA 136 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (533)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4566677777777777777777777665
No 283
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.16 E-value=11 Score=35.74 Aligned_cols=102 Identities=16% Similarity=0.233 Sum_probs=51.1
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 009506 209 MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC--QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286 (533)
Q Consensus 209 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 286 (533)
......+...++..-....+++.++..+-.++....+ .++ .+-.++++.+. .-+.+++..++..=...|+.||.++
T Consensus 60 ~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 60 LPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 3334444444444444455566666665555442110 111 11112222222 2244566666555556666666666
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 287 LTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
+..+|+.+.+.+++.+|.++.-.|+.
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66666666666666666665555544
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.16 E-value=24 Score=30.48 Aligned_cols=124 Identities=9% Similarity=0.080 Sum_probs=59.9
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHH-HHHHH--HHHHhcCCH
Q 009506 154 GRAKRPWQVKTIYKEMTDNGLSPNWNT-YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL-YNTLL--AMCADVGYT 229 (533)
Q Consensus 154 ~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~li--~~~~~~g~~ 229 (533)
++.+..++|+.-|..+.+.|..-=+.. ---........|+...|...|+++-.....|-..- ..-|= -.+...|-+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 345556666666666665543211110 11111223445666666666666655433333221 11111 123455666
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 230 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 230 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
+......+-+...+. +--...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 149 ~dV~srvepLa~d~n-~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGN-PMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCC-hhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 666666666655442 223333445555555666666666666665543
No 285
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.11 E-value=24 Score=34.16 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=22.2
Q ss_pred hcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 155 RAKRPWQVKTIYKEMTDN--GLSPNWNTYASLLRAYGRARYGEDTL 198 (533)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~ 198 (533)
...+.++++..+.+-+.+ ...-.-.+|..+..+.++.|.+++++
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 455566666666555432 11112245555566666666655553
No 286
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.97 E-value=2.4 Score=26.31 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKA 136 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (533)
..+++.|...|...|++++|+.++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 34667777777777777777777777653
No 287
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.86 E-value=4.6 Score=38.10 Aligned_cols=105 Identities=11% Similarity=0.120 Sum_probs=68.8
Q ss_pred hcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 009506 101 NEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI---GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 177 (533)
Q Consensus 101 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 177 (533)
..|......+-..++..-....+++++...+-+++.. ...|+... .+.+..|. .-++++++.++..=++.|+-||
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccc
Confidence 3444445555556666666677788888777766542 11222211 12233222 3356688888888888888899
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
.++++.||+.+.+.+++.+|.++.-+|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999998888888877766654
No 288
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.99 E-value=66 Score=34.61 Aligned_cols=149 Identities=9% Similarity=0.086 Sum_probs=82.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKP---NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 191 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 191 (533)
|+-+.+.+.+++|+++-+.... ..| -...+...|..+...|++++|-...-.|... +..-|---+.-+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 5566778888888887766543 233 3446677788888888888888877777642 344455445555554
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH------------------HHHhCCCCCCCHHHHH
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE------------------DMKSSENCQPDSWTFS 253 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------------------~m~~~~~~~p~~~~~~ 253 (533)
++..... .-+.......+...|..+|..+.. .+...-.++.. +..+. .-+...-.
T Consensus 437 ~~l~~Ia---~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~---Se~~~L~e 509 (846)
T KOG2066|consen 437 DQLTDIA---PYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN---SESTALLE 509 (846)
T ss_pred cccchhh---ccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh---ccchhHHH
Confidence 4433222 222222222344555555555554 22211111111 11111 11222233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH
Q 009506 254 SMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
.|+..|...+++..|.+++-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 57888888888988888876654
No 289
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.68 E-value=45 Score=32.44 Aligned_cols=225 Identities=11% Similarity=0.046 Sum_probs=121.2
Q ss_pred HcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHH----HHHHHCC-CCCCHHHHHHHHHHHHhcC
Q 009506 120 TAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQVKTIY----KEMTDNG-LSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g-~~p~~~~~~~ll~~~~~~g 192 (533)
...+.++|+..+.+-... ...--..+|..+..+.++.|.+++++..- +-..+.. -..--..|-.|.+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666554432 00111235666667777777776654321 1111110 0011234455555555555
Q ss_pred ChHHHHHHHHHHHH-cCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCCHHHHHHHHHHHHhcCC
Q 009506 193 YGEDTLSVYREMKE-KGMQL---SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN----CQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 193 ~~~~a~~~~~~m~~-~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~ 264 (533)
++.+++.+-..-.. .|..+ --...-++-.++.-.+.++++++.|+...+-.. .......|..|-..|.+..|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 55555555443332 12222 112333455666667788888888877554211 11234567888888888888
Q ss_pred hHHHHHHHHHHHH----cCCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHhhh----CCCCCCH-HHHHHHHHHHh
Q 009506 265 VSEAEAMFNEMLE----AGFEPNLFVLT-----SLIQCYGKAQRTDDVVRALNRLPE----LGITPDD-RFCGCLLNVMT 330 (533)
Q Consensus 265 ~~~A~~~~~~m~~----~g~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~-~~~~~ll~~~~ 330 (533)
+++|.-+..+..+ .++.--..-|. .|.-++...|++.+|.+.-++..+ .|-++.. .....+.+.|.
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR 257 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYR 257 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Confidence 8888777665443 22221122233 334467778888888887777544 3433222 24455666677
Q ss_pred cCCh-HHHHHHHHHH
Q 009506 331 QTPK-EELGKLVECV 344 (533)
Q Consensus 331 ~~~~-~~a~~~~~~~ 344 (533)
..|+ +.+..-++..
T Consensus 258 ~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 258 SRGDLERAFRRYEQA 272 (518)
T ss_pred hcccHhHHHHHHHHH
Confidence 7777 7777666553
No 290
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.40 E-value=6.7 Score=30.35 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 161 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 161 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+..+-++.+....+.|++.+..+.+++|.|.+++..|.++|+.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555555556666677777777777777777777777777766654
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.27 E-value=28 Score=29.71 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=8.6
Q ss_pred HhcCChHHHHHHHHHHHH
Q 009506 260 SCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 260 ~~~g~~~~A~~~~~~m~~ 277 (533)
...|++.+|.++|+++.+
T Consensus 55 i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 55 IVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHhCCHHHHHHHHHHHhc
Confidence 344455555555554433
No 292
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.18 E-value=34 Score=30.73 Aligned_cols=181 Identities=12% Similarity=0.025 Sum_probs=97.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 120 TAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 198 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 198 (533)
..|-+.-|+-=|.+... +.|+ ..+||.|.--+...|+++.|.+.|+...+..-.-+-...|.-|..| -.|++.-|.
T Consensus 77 SlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y-Y~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY-YGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee-ecCchHhhH
Confidence 34444555555555444 3454 3578888888889999999999999988765222223333333333 357888887
Q ss_pred HHHHHHHHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 199 SVYREMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIF-EDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 199 ~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
+=|...-+.+. .|-...|--++ -..-+..+|..-+ ++.. ..|..-|...|-.|-- |++. ...+++++.
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-----~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~ 223 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-----KSDKEQWGWNIVEFYL-GKIS-EETLMERLK 223 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-----hccHhhhhHHHHHHHH-hhcc-HHHHHHHHH
Confidence 66666555432 22223333222 2234555665444 3333 2344444444333321 1111 122333332
Q ss_pred HcCCCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 277 EAGFEPN-------LFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 277 ~~g~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
.. -.-+ ..||--|..-|...|+.++|..+|+-.+..+
T Consensus 224 a~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 224 AD-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hh-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 21 1111 3467777777888888888888888776543
No 293
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.10 E-value=3.3 Score=24.34 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKA 136 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (533)
..|..+...|.+.|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456666777777777777777777665
No 294
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=83.09 E-value=26 Score=29.24 Aligned_cols=54 Identities=15% Similarity=0.171 Sum_probs=26.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 224 ADVGYTDEAFEIFEDMKSSENC-QPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
.+.|++++|.+.|+.+....-. +-....--.|+.+|.+.+++++|...+++..+
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3445555555555555544210 01233344455555555555555555555554
No 295
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=82.66 E-value=44 Score=31.55 Aligned_cols=115 Identities=10% Similarity=0.114 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cC-ChHHHHHHHHHHHH-cCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 009506 159 PWQVKTIYKEMTD-NGLSPNWNTYASLLRAYGR-AR-YGEDTLSVYREMKE-KGMQLSVTLYNTLLAMCADVGYTDEAFE 234 (533)
Q Consensus 159 ~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~~-~g-~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (533)
+.+|+++|+.... ..+--|..+...|++.... .+ ....-.++.+-+.. .|-.++..+...+|..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3445555542221 2234455566666655544 11 11111222222221 2334455555556666666666666666
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009506 235 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 273 (533)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 273 (533)
+++.........-|..-|..+|+.....|+..-..++.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 655544431113455556666666666666554444443
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.34 E-value=19 Score=37.27 Aligned_cols=148 Identities=20% Similarity=0.194 Sum_probs=92.8
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 270 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (533)
.|+++.|..++..+. ...-+.+...+.+.|..++|+++-- .| ..-| ....+.|+++.|.+
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~--------D~-d~rF----elal~lgrl~iA~~ 658 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELST--------DP-DQRF----ELALKLGRLDIAFD 658 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCC--------Ch-hhhh----hhhhhcCcHHHHHH
Confidence 466666655554433 2344566777778888888887631 11 1222 23457788999988
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCC
Q 009506 271 MFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 349 (533)
Q Consensus 271 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~ 349 (533)
+..+. -+..-|..|-++..+.|++..|.+.|.+..+. ..|+-++...|+ +-..++....++.+.
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~---------~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARDL---------GSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcch---------hhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 87664 46788999999999999999999999887653 457777777777 334444444444444
Q ss_pred ChhHHHHHHHHhhhhhccHHHHHHHHHhhh
Q 009506 350 KLGYVVKLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 350 ~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
....++..++ .|+. +++.+++.+-
T Consensus 724 ~N~AF~~~~l-----~g~~-~~C~~lLi~t 747 (794)
T KOG0276|consen 724 NNLAFLAYFL-----SGDY-EECLELLIST 747 (794)
T ss_pred cchHHHHHHH-----cCCH-HHHHHHHHhc
Confidence 4444433332 2443 5555554443
No 297
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.18 E-value=10 Score=29.12 Aligned_cols=48 Identities=15% Similarity=0.184 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
.-++.+-++.+....+.|++....+-+++|.+.+++..|.++|+-++.
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555566667777777777777777777777777766653
No 298
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.36 E-value=17 Score=37.54 Aligned_cols=149 Identities=9% Similarity=0.020 Sum_probs=91.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009506 121 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 200 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 200 (533)
.|+++.|..++..+. ...-+.+..-+-+.|..++|+++- +|..- -.....+.|+++.|.++
T Consensus 599 rrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHH
Confidence 456666665554432 223455666666666666665432 22221 12334466788888777
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 009506 201 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280 (533)
Q Consensus 201 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 280 (533)
..+.. +..-|..|.++....|++..|.+.|..... |..|+-.+...|+-+....+-....+.|.
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~ 723 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK 723 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence 65542 556788888888888888888888876654 44567777777777665555555555552
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 281 EPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 281 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
.|.-.-+|...|+++++.+++..-
T Consensus 724 ------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 724 ------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 223334666778888888776654
No 299
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=80.77 E-value=2.4 Score=25.42 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHhcCChHHH
Q 009506 248 DSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A 268 (533)
|...|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444444444444444444444
No 300
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.33 E-value=0.56 Score=39.40 Aligned_cols=83 Identities=13% Similarity=0.089 Sum_probs=55.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 193 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 193 (533)
+|+.+.+.+....+..+++.+...+..-+....+.++..|++.++.++..++++. .+..-...+++.|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 5667777788888888888888766556788888888888888877777777761 111233455666666666
Q ss_pred hHHHHHHHHH
Q 009506 194 GEDTLSVYRE 203 (533)
Q Consensus 194 ~~~a~~~~~~ 203 (533)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 6666555544
No 301
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.30 E-value=89 Score=33.55 Aligned_cols=300 Identities=13% Similarity=0.070 Sum_probs=153.5
Q ss_pred HHhhcCCCCCHHHHH-----HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHH
Q 009506 98 RARNEKWRIDPNAFS-----TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP--WQVKTIYKEMT 170 (533)
Q Consensus 98 ~~~~~g~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~--~~a~~~~~~m~ 170 (533)
++.+-|+..+..-|. .+|+-+...+.|..|+++-..+...-..- ..+|.....-+.+..+. +++++..++=.
T Consensus 422 r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kl 500 (829)
T KOG2280|consen 422 RDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKL 500 (829)
T ss_pred cccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHh
Confidence 445667777766664 45777888889999999887775421111 45566666666655322 23444443333
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ----LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-- 244 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-- 244 (533)
.... .....|..+.+-...+|+.+.|..+++.=...+-. .+..-+...+.-+.+.|+.+-...++-.+..+-.
T Consensus 501 s~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s 579 (829)
T KOG2280|consen 501 SAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS 579 (829)
T ss_pred cccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Confidence 3222 34456777777777889999888887642222111 1222344555566667777766666655544210
Q ss_pred -------CCC-CHHHHHHHHH---------HHHhcCChHHHHHHHH--HHH----HcCCCCCHHHHHHHHHHHHhcCCh-
Q 009506 245 -------CQP-DSWTFSSMIT---------ICSCRGKVSEAEAMFN--EML----EAGFEPNLFVLTSLIQCYGKAQRT- 300 (533)
Q Consensus 245 -------~~p-~~~~~~~li~---------~~~~~g~~~~A~~~~~--~m~----~~g~~p~~~~~~~li~~~~~~g~~- 300 (533)
..| ....|.-+++ .|- .++-..+...|. ... ..|..|+. .....+|.+....
T Consensus 580 ~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s 655 (829)
T KOG2280|consen 580 SLFMTLRNQPLALSLYRQFMRHQDRATLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKS 655 (829)
T ss_pred HHHHHHHhchhhhHHHHHHHHhhchhhhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhh
Confidence 001 1111111111 111 111111111111 100 01222332 2233334333321
Q ss_pred --h-------HHHHHHHHhh-hCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHH
Q 009506 301 --D-------DVVRALNRLP-ELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK 369 (533)
Q Consensus 301 --~-------~a~~~~~~m~-~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 369 (533)
+ +-+++.+.+. +.|......+.+--+.-+...|+ .+|.++-...+- ..-.++..-+.+++..++|
T Consensus 656 ~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki---pdKr~~wLk~~aLa~~~kw- 731 (829)
T KOG2280|consen 656 FEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI---PDKRLWWLKLTALADIKKW- 731 (829)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC---cchhhHHHHHHHHHhhhhH-
Confidence 1 1122222222 22444444455555666666676 777776554432 2223334445555666666
Q ss_pred HHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009506 370 KEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 410 (533)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 410 (533)
++.+++-++.. .+.-|.-+..+|.+.|+.+||.+.+.+
T Consensus 732 eeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYipr 769 (829)
T KOG2280|consen 732 EELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPR 769 (829)
T ss_pred HHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhc
Confidence 55544444433 367888899999999999999998875
No 302
>PRK09687 putative lyase; Provisional
Probab=79.79 E-value=57 Score=31.00 Aligned_cols=205 Identities=11% Similarity=0.045 Sum_probs=136.8
Q ss_pred CCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-----hHHHHHHHHHHHCCCC
Q 009506 105 RIDPNAFSTLIKLYGTAGNF----DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP-----WQVKTIYKEMTDNGLS 175 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~-----~~a~~~~~~m~~~g~~ 175 (533)
.+|+..-...+.++++.|+. +++..++..+... .+|..+-...+.+++..+.. ..+...+..... .
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D 139 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---D 139 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---C
Confidence 45677777778888888863 4677888777432 47777777777777766532 223444444433 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009506 176 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-YTDEAFEIFEDMKSSENCQPDSWTFSS 254 (533)
Q Consensus 176 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~ 254 (533)
++..+--..+.++++.++ ..+...+-.+.+. +|..+-...+.++.+.+ ....+...+..+.. .+|..+-..
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~ 211 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIE 211 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHH
Confidence 566777788888888887 4566666666653 35566666777777654 24567777766664 578888888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 009506 255 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 331 (533)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 331 (533)
.+.++.+.|+. .|...+-...+.+ + .....+.+++..|.. +|...+..+.+.. ||..+-...+.+|.+
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHHhc
Confidence 99999999985 5555555555543 3 234678888999885 6888888877632 477766666666543
No 303
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=79.79 E-value=56 Score=30.95 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=82.5
Q ss_pred HHcCChHHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHC--------CCCCCH----
Q 009506 119 GTAGNFDGCLNVYEEMKAIG--VKPNM------ITYNNLLDTMGRAKRPWQVKTIYKEMTDN--------GLSPNW---- 178 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~g--~~pd~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~p~~---- 178 (533)
.+.|+++.|..++.+..... ..|+. ..||.-...+.+..+++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46789999999998876532 23332 23444444444333777776666554321 122332
Q ss_pred -HHHHHHHHHHHhcCChHH---HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009506 179 -NTYASLLRAYGRARYGED---TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 254 (533)
Q Consensus 179 -~~~~~ll~~~~~~g~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 254 (533)
.++..++.+|...+..+. |..+++.+...... ...++-.-+..+.+.++.+++.+++.+|...- .-....+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--~~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV--DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc--ccccchHHH
Confidence 345566666666665543 44444455333222 23444445555555777777777777776642 112333444
Q ss_pred HHHHH---HhcCChHHHHHHHHHHHHcCCCCC
Q 009506 255 MITIC---SCRGKVSEAEAMFNEMLEAGFEPN 283 (533)
Q Consensus 255 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~ 283 (533)
++..+ ... ....|...++.+....+.|.
T Consensus 161 ~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 161 ILHHIKQLAEK-SPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCC
Confidence 43333 222 23345555555444333333
No 304
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.42 E-value=18 Score=32.13 Aligned_cols=73 Identities=15% Similarity=0.176 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChhHHH
Q 009506 230 DEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE---AGFEPNLFVLTSLIQCYGKAQRTDDVV 304 (533)
Q Consensus 230 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~ 304 (533)
+.|.+.|-.+...+. .+.......+..|--..+.+++.+++....+ .+-.+|+..+..|+..|.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~--l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPE--LETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCC--CCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666666553 2333333333333335666677776666554 223566677777777777777766664
No 305
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.35 E-value=7.8 Score=30.01 Aligned_cols=46 Identities=13% Similarity=0.235 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 267 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444444444555566666666666666666666666666666544
No 306
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=78.99 E-value=5.1 Score=24.78 Aligned_cols=24 Identities=17% Similarity=0.376 Sum_probs=10.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEM 275 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m 275 (533)
++.|...|...|++++|..++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHH
Confidence 344444444444444444444443
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.51 E-value=22 Score=31.58 Aligned_cols=79 Identities=11% Similarity=0.104 Sum_probs=56.9
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHHhcCCH
Q 009506 153 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK---GMQLSVTLYNTLLAMCADVGYT 229 (533)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~ 229 (533)
..+.|+ +.|.+.|-.+...+.--++.....|...|. ..+.+++++++-...+. +-.+|...+.+|...|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 445554 567788888887776556666666666665 57788888888777653 3367888888899999888888
Q ss_pred HHHH
Q 009506 230 DEAF 233 (533)
Q Consensus 230 ~~A~ 233 (533)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8874
No 308
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=77.74 E-value=64 Score=30.47 Aligned_cols=116 Identities=10% Similarity=0.140 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChhHH
Q 009506 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR-G-KVSEAEAMFNEMLE-AGFEPNLFVLTSLIQCYGKAQRTDDV 303 (533)
Q Consensus 227 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a 303 (533)
..+.+|+++|+.....+.+--|..+...+++..... + ....-.++.+-+.. .|..++..+...+|..++..+++++.
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 345677777774433222355777777777766652 2 33334444444443 35678888999999999999999999
Q ss_pred HHHHHHhhhC-CCCCCHHHHHHHHHHHhcCCh-HHHHHHHH
Q 009506 304 VRALNRLPEL-GITPDDRFCGCLLNVMTQTPK-EELGKLVE 342 (533)
Q Consensus 304 ~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~ 342 (533)
+++|...... +..-|..-|..+|......|+ .-..+++.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 9999987655 666788889999999999998 55555554
No 309
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=77.52 E-value=3 Score=25.00 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 009506 212 SVTLYNTLLAMCADVGYTDEAF 233 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~ 233 (533)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555555555555555553
No 310
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=76.82 E-value=77 Score=30.91 Aligned_cols=66 Identities=11% Similarity=0.092 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 247 PDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP---NLFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 247 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
....+|..+...+.+.|.++.|...+..+...+... .......-...+-..|+.++|+..+++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456678888888999999999999888877643111 333444445666677888888888887766
No 311
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.65 E-value=1.1e+02 Score=31.32 Aligned_cols=184 Identities=11% Similarity=0.142 Sum_probs=127.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 009506 103 KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA 182 (533)
Q Consensus 103 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 182 (533)
.-..|....-+++..++.+-.+.-...+-.+|...| -+-..|-.++.+|... .-+.-..+++++.+..+ -|++.-.
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~R 136 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGR 136 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHH
Confidence 334577778889999999999999999999999865 5778899999999988 56778899999988754 3444444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEKGMQL-----SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
-|..-|-+ ++...+...|.....+=++. -...|.-|+..- ..+.+..+.+...+........-.+.+.-+-.
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 55555555 88888888888776642221 123455554421 34667777777777655433556677777778
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 294 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 294 (533)
-|....++.+|.+++..+.+.. ..|...-..+|.-+
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 214 KYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred HhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 8889999999999999776643 23444444444433
No 312
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.91 E-value=32 Score=28.88 Aligned_cols=46 Identities=9% Similarity=0.082 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc
Q 009506 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK 381 (533)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~ 381 (533)
+++..+++.+.-..|+...+-..-+..+...|++ ++|..+|+.+..
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w-~eA~rvlr~l~~ 72 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDMFDGWLLIARGNY-DEAARILRELLS 72 (153)
T ss_pred HHHHHHHHHHHHhCCCccccchhHHHHHHHcCCH-HHHHHHHHhhhc
Confidence 4444444444444444433333333333344554 555555555554
No 313
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=72.89 E-value=8.1 Score=22.70 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=23.9
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 387 YCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
+|..+...|...|++++|+..|++.++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 6788999999999999999999988764
No 314
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.61 E-value=64 Score=28.00 Aligned_cols=142 Identities=11% Similarity=0.137 Sum_probs=89.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH-HHHH
Q 009506 177 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW-TFSS 254 (533)
Q Consensus 177 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~ 254 (533)
....|..-++. .+.+..++|+.-|..+.+.|..--.+ .--.+.......|+...|...|+++-.... .|-.. -..-
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHH
Confidence 33555555553 45677888888888888876542221 111223446678888888888888876543 34322 1222
Q ss_pred HHH--HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 009506 255 MIT--ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320 (533)
Q Consensus 255 li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 320 (533)
|=. .+...|.+++...-.+-+...+-+-....-..|--+-.+.|++.+|.+.|..+......|...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprni 203 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNI 203 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHH
Confidence 222 245678888888877776655544445555667677778889999988888887654444433
No 315
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=71.85 E-value=5.7 Score=21.99 Aligned_cols=22 Identities=14% Similarity=0.080 Sum_probs=13.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYE 132 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~ 132 (533)
...+...+...|++++|.++++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445566666666666666654
No 316
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=71.82 E-value=77 Score=28.61 Aligned_cols=160 Identities=17% Similarity=0.074 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCCHHHHHHHH
Q 009506 248 DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-TPDDRFCGCLL 326 (533)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll 326 (533)
-...||-|.--+...|+++.|.+.|+...+..-.-+-...|.=| ++--.|++..|.+=|...-+..- .|=...|--++
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 36677878777888888888888888887743222222222222 22345777777765555543321 12111222222
Q ss_pred HHHhcCChHHHH-HHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--C-------ccchhhHHHHHHHH
Q 009506 327 NVMTQTPKEELG-KLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--D-------VKKAYCNCLIDLCV 396 (533)
Q Consensus 327 ~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~-------~~~~~~~~li~~~~ 396 (533)
. .+....+|. .+.+...+.+.+ ..-..++..|. |.+.+ ..+|+++.. . .-+.+|--|..-|.
T Consensus 177 E--~k~dP~~A~tnL~qR~~~~d~e--~WG~~iV~~yL--gkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 177 E--QKLDPKQAKTNLKQRAEKSDKE--QWGWNIVEFYL--GKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred H--hhCCHHHHHHHHHHHHHhccHh--hhhHHHHHHHH--hhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 1 112222222 244444333211 11122222222 21111 122233221 0 11236777888899
Q ss_pred hcCCHHHHHHHHHHHHhccc
Q 009506 397 NLNLLENACKLLELGLTLEV 416 (533)
Q Consensus 397 ~~g~~~~A~~l~~~m~~~g~ 416 (533)
..|+.++|..+|+......+
T Consensus 249 ~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 249 SLGDLDEATALFKLAVANNV 268 (297)
T ss_pred ccccHHHHHHHHHHHHHHhH
Confidence 99999999999998765543
No 317
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.74 E-value=28 Score=31.26 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=48.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Q 009506 216 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA--GFEPNLFVLTSLIQC 293 (533)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~ 293 (533)
.+..++.+.+.+.+.+|+...++-.+.. +-|..+-..++..||-.|++++|..-++-.... ...+-...|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3444566667777777777776666553 445666667778888888888887766655442 223345566666665
No 318
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.53 E-value=64 Score=27.55 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=28.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 189 GRARYGEDTLSVYREMKEKGMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
.+.++.+++..+++.|.-.... +...++.. ..+...|++.+|+.+|+++...
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~--~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDG--WLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHH--HHHHHhCCHHHHHHHHHHHhcc
Confidence 3456667777777666554221 11222222 2345667777777777776654
No 319
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=71.15 E-value=61 Score=27.18 Aligned_cols=94 Identities=12% Similarity=0.243 Sum_probs=54.4
Q ss_pred HHhhcCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHH
Q 009506 98 RARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIG-----VKPNMITYNNLLDTMGRAKR-PWQVKTIYKEM 169 (533)
Q Consensus 98 ~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~pd~~~~~~li~~~~~~g~-~~~a~~~~~~m 169 (533)
.|.+.+..++..+ .|.++.-.+..+++.-.+.+++.+.-.. -..|...|++++.+.++..- ---+..+|+.|
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L 106 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL 106 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH
Confidence 3555555555433 4666666677777777777776663210 01244456666666655444 33456666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc
Q 009506 170 TDNGLSPNWNTYASLLRAYGRA 191 (533)
Q Consensus 170 ~~~g~~p~~~~~~~ll~~~~~~ 191 (533)
.+.+.+++..-|..+|.++.+.
T Consensus 107 k~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 107 KKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred HHcCCCCCHHHHHHHHHHHHcC
Confidence 6666666666666666666554
No 320
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=71.05 E-value=1.1e+02 Score=29.91 Aligned_cols=57 Identities=16% Similarity=0.002 Sum_probs=35.5
Q ss_pred HHHhhhhhccHHHHHHHHHhhhccCc------cchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 358 LLEEQDIEGDFKKEATELFNSISKDV------KKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 358 l~~~~~~~g~~~~~a~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
+.....+.|.+ +.|...+..+.... ...+.-.-+..++..|+.++|+..++......
T Consensus 152 ~a~~aRk~g~~-~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 152 FAKLARKAGNF-QLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHCCCc-HHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 33444455554 66666665554321 33344556777888899999999888877633
No 321
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.94 E-value=96 Score=29.36 Aligned_cols=59 Identities=8% Similarity=0.117 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 216 YNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 216 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
++.....|..+|.+.+|.++.++...-. +.+...|-.|++.+...||--.|.+-++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld--pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD--PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC--hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444566777888888888877777654 4567777777888888887666666666654
No 322
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=70.93 E-value=9.4 Score=22.23 Aligned_cols=28 Identities=25% Similarity=0.163 Sum_probs=23.0
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 387 YCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
.|..+...|.+.|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5667888999999999999999987654
No 323
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=70.68 E-value=98 Score=29.32 Aligned_cols=196 Identities=9% Similarity=0.032 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC--------CCCCCH-----HHHHHHHHHHHhcCChhH---HHHHHHHHHHCC
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAI--------GVKPNM-----ITYNNLLDTMGRAKRPWQ---VKTIYKEMTDNG 173 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~pd~-----~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g 173 (533)
.||.-...+.+..+++.|...+++..+. ...++. .++..++.+|...+..+. |.++++.+....
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 4554444444443888888777765432 122333 456778888888776654 666666665432
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 174 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC---ADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 174 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
.-...++-.-++.+.+.++.+.+.+++.+|...-. .....+..++..+ ..... ..|...++.+..... .|...
T Consensus 118 -~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~l~~i~~l~~~~~-~~a~~~ld~~l~~r~-~~~~~ 193 (278)
T PF08631_consen 118 -GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDSILHHIKQLAEKSP-ELAAFCLDYLLLNRF-KSSED 193 (278)
T ss_pred -CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHhhCc-HHHHHHHHHHHHHHh-CCChh
Confidence 22355666677888889999999999999988622 1233444444443 44333 445555544433221 33332
Q ss_pred HHH--HHHH-H--HHhcCC------hHHHHHHHHHHHH-cCCCCCHHHHHHHH-------HHHHhcCChhHHHHHHHH
Q 009506 251 TFS--SMIT-I--CSCRGK------VSEAEAMFNEMLE-AGFEPNLFVLTSLI-------QCYGKAQRTDDVVRALNR 309 (533)
Q Consensus 251 ~~~--~li~-~--~~~~g~------~~~A~~~~~~m~~-~g~~p~~~~~~~li-------~~~~~~g~~~~a~~~~~~ 309 (533)
.|. .++. . ..+.++ ++...++++...+ .+.+.+..+-.++. ..+.+.+++++|.+.|+-
T Consensus 194 ~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 194 QWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 111 1111 1 112111 4444555554332 23333443333322 234467778888877764
No 324
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=70.60 E-value=64 Score=27.17 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=25.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHc
Q 009506 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSS-MITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 226 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
.++.+++..+++-|.-. .|+..-... -.-.+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL---rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL---RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh---CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 55666666666665542 332221111 122344566666666666666554
No 325
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.62 E-value=8.6 Score=24.72 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 390 CLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 390 ~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
.|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 47789999999999999999987554
No 326
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.11 E-value=76 Score=29.84 Aligned_cols=55 Identities=9% Similarity=0.124 Sum_probs=38.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHHhcCChhHHHHHHH
Q 009506 254 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV-------LTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-------~~~li~~~~~~g~~~~a~~~~~ 308 (533)
.+.+-..+.+++++|...+.++...|+..|..+ ...+.+.|...|+....-+...
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~ 69 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTIT 69 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 345556778888899999988888888776544 4456667777777665555443
No 327
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.93 E-value=12 Score=24.03 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=12.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 009506 184 LLRAYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~ 206 (533)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555544
No 328
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.49 E-value=70 Score=26.83 Aligned_cols=82 Identities=10% Similarity=0.177 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC---C--CCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcCHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNG---L--SPNWNTYASLLRAYGRARY-GEDTLSVYREMKEKGMQLSVTLYNT 218 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~--~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~ 218 (533)
..|.++.-....+++...+.+++.+.... + ..+...|.+++++.+.... ---+..+|..|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34666666666667776666666663210 0 1233455566666554444 2234555556655555556666666
Q ss_pred HHHHHHhc
Q 009506 219 LLAMCADV 226 (533)
Q Consensus 219 li~~~~~~ 226 (533)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 66555543
No 329
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=68.37 E-value=14 Score=35.44 Aligned_cols=53 Identities=19% Similarity=0.165 Sum_probs=36.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 116 KLYGTAGNFDGCLNVYEEMKAIGVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
+-|.+.|.+++|++.|..-.. +.| |.++|..-..+|.+..++..|..=-+..+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 457778888888888877655 345 77777777778887777766655444443
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=67.50 E-value=13 Score=21.65 Aligned_cols=28 Identities=25% Similarity=0.170 Sum_probs=23.6
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 387 YCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
+|..+...|.+.|+.++|.+.|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5677888899999999999999987653
No 331
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=67.45 E-value=17 Score=21.17 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKA 136 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (533)
+|..+...|.+.|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666777777777777777776654
No 332
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=67.15 E-value=1.2e+02 Score=29.14 Aligned_cols=109 Identities=11% Similarity=0.063 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009506 229 TDEAFEIFEDMKSSENC---QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 229 ~~~A~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 305 (533)
.++|.+.|+.....+.- ..+...-..++....+.|+.+.-..+++..... .+......++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 56777777777664221 234555566666777777766655555555542 467777788888888888888888
Q ss_pred HHHHhhhCC-CCCCHHHHHHHHHHHh-cC--ChHHHHHHHH
Q 009506 306 ALNRLPELG-ITPDDRFCGCLLNVMT-QT--PKEELGKLVE 342 (533)
Q Consensus 306 ~~~~m~~~g-~~p~~~~~~~ll~~~~-~~--~~~~a~~~~~ 342 (533)
+++.+...+ +++.. ... ++.++. .. |.+.+..++.
T Consensus 223 ~l~~~l~~~~v~~~d-~~~-~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-IRY-VLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHCTSTS-TTT-HHH-HHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHcCCcccccHH-HHH-HHHHHhcCChhhHHHHHHHHH
Confidence 888877754 44333 333 333443 33 2266666543
No 333
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=66.58 E-value=6.3 Score=32.22 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=25.4
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 120 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM 153 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~ 153 (533)
+.|.-.+|..+|.+|.++|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 456777889999999999988885 77887654
No 334
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=66.58 E-value=45 Score=33.64 Aligned_cols=123 Identities=12% Similarity=0.063 Sum_probs=69.8
Q ss_pred hcCCHHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 009506 225 DVGYTDEAF-EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 303 (533)
Q Consensus 225 ~~g~~~~A~-~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 303 (533)
..|++-.|- +++.-++.... .|+.+..-+ ..+...|+++.+.+.+...... +.-...+...++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~-~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQ-DPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCC-CchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 446655553 34444444332 455444333 3456678888888877665332 234566777788888888888888
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChh
Q 009506 304 VRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLG 352 (533)
Q Consensus 304 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~ 352 (533)
..+-..|....+. |+.........--+.|. +++...++.+...+|...
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 8888777766554 33322222222223334 666666666665555443
No 335
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.52 E-value=83 Score=31.69 Aligned_cols=204 Identities=10% Similarity=0.049 Sum_probs=100.7
Q ss_pred hhHHHHHhhcCCCCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHH
Q 009506 93 KSYDTRARNEKWRIDPNA--FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI--TYNNLLDTMGRAKRPWQVKTIYKE 168 (533)
Q Consensus 93 ~~l~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--~~~~li~~~~~~g~~~~a~~~~~~ 168 (533)
..+...+.+.|..++... ..+.+...++.|+.+- .+.+.+.|..|+.. ...+.+...+..|+.+.+..+++
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~- 89 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD- 89 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH-
Confidence 344556667787776543 3445566667777653 44455556555432 11234555567788776555543
Q ss_pred HHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009506 169 MTDNGLSPNWN---TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL--YNTLLAMCADVGYTDEAFEIFEDMKSSE 243 (533)
Q Consensus 169 m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~ 243 (533)
.|...+.. .-.+.+...+..|+. ++++.+.+.|..++... -.+.+...+..|+.+.+..+++.-....
T Consensus 90 ---~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~ 162 (413)
T PHA02875 90 ---LGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD 162 (413)
T ss_pred ---cCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence 33211111 012334444455665 45555566666554321 1234455566777766555554321111
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009506 244 NCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV---LTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 319 (533)
Q Consensus 244 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 319 (533)
..|..-++. +...+..|+.+ +.+.+.+.|..++... ..+++...+..|+.+- .+.+.+.|..++.
T Consensus 163 --~~d~~g~Tp-L~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~~gad~n~ 230 (413)
T PHA02875 163 --IEDCCGCTP-LIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFIKRGADCNI 230 (413)
T ss_pred --CCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHHCCcCcch
Confidence 112222233 33344556654 3444556666665432 1234443455666543 4444556666654
No 336
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.22 E-value=84 Score=29.53 Aligned_cols=90 Identities=12% Similarity=0.110 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 261 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (533)
..=|.+++..+++.+++...-+--+.--+.-..+...-|-.|.|.|+...+.++-..-..... .-+...|.+++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLL 165 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHH
Confidence 344788888888888765544333321122344455556667788888777777766554322 2334446666665554
Q ss_pred -----cCChHHHHHHH
Q 009506 262 -----RGKVSEAEAMF 272 (533)
Q Consensus 262 -----~g~~~~A~~~~ 272 (533)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 57777777665
No 337
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=63.99 E-value=87 Score=29.44 Aligned_cols=90 Identities=13% Similarity=0.037 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-
Q 009506 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD- 225 (533)
Q Consensus 147 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~- 225 (533)
..=|.+++..+++.+++...-+--+.--+.-..+...-|-.|.|.+....+.++-..-...--.-+...|.+++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 3457888999999988766544433211223345556677789999999999888776654222244557777666554
Q ss_pred ----cCCHHHHHHHH
Q 009506 226 ----VGYTDEAFEIF 236 (533)
Q Consensus 226 ----~g~~~~A~~~~ 236 (533)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 69999999987
No 338
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.64 E-value=1.3e+02 Score=28.12 Aligned_cols=210 Identities=10% Similarity=0.111 Sum_probs=121.4
Q ss_pred hcCCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHH---CC
Q 009506 101 NEKWRIDPNAFSTLIKLY-GTAGNFDGCLNVYEEMKAIGVKPNM---ITYNNLLDTMGRAKRPWQVKTIYKEMTD---NG 173 (533)
Q Consensus 101 ~~g~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~pd~---~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g 173 (533)
+++-.||+..=|..-..- .+....++|+.-|++..+..-+.-. ...-.+|..+.+.+++++....|++|+. ..
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 345566666544332221 2345788999999988764212222 2344578888999999999999988863 21
Q ss_pred CC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHH----Hc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-
Q 009506 174 LS--PNWNTYASLLRAYGRARYGEDTLSVYREMK----EK-GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC- 245 (533)
Q Consensus 174 ~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~----~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~- 245 (533)
+. -+....|++++.-....+.+...+.|+.-. +. +-+.--.|-+.|...|...|++.+..+++.++..+-.-
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 21 345667788777766666665555554322 21 11111223345667777788888888888877653110
Q ss_pred --CCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH-----hcCChhHHHH-HHHH
Q 009506 246 --QPD-------SWTFSSMITICSCRGKVSEAEAMFNEMLE-AGFEPNLFVLTSLIQCYG-----KAQRTDDVVR-ALNR 309 (533)
Q Consensus 246 --~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~-----~~g~~~~a~~-~~~~ 309 (533)
..| ...|..=|.+|....+-..-..+|++... ..-.|.+.... +|+-|+ +.|++++|-. +|+.
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHH
Confidence 111 34566677888877777777777776543 22235444433 333332 4566666554 3333
Q ss_pred hh
Q 009506 310 LP 311 (533)
Q Consensus 310 m~ 311 (533)
.+
T Consensus 258 FK 259 (440)
T KOG1464|consen 258 FK 259 (440)
T ss_pred Hh
Confidence 33
No 339
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=63.39 E-value=1.5e+02 Score=28.63 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHH
Q 009506 265 VSEAEAMFNEMLEAGF----EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGK 339 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~ 339 (533)
.+.|.+.|+.+...+. ..+......++....+.|..+.-..+++..... .+......++.+++...+ +...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 4566666666665311 234445555555666666655544444444432 245556666777766666 44555
Q ss_pred HHHHHHh
Q 009506 340 LVECVEK 346 (533)
Q Consensus 340 ~~~~~~~ 346 (533)
+++.+..
T Consensus 223 ~l~~~l~ 229 (324)
T PF11838_consen 223 LLDLLLS 229 (324)
T ss_dssp HHHHHHC
T ss_pred HHHHHcC
Confidence 6665555
No 340
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=63.22 E-value=50 Score=26.82 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 161 QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 161 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+..+.++.+....+.|++.+...-++++.+.+++..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44555566666667777777777777777777777777777776654
No 341
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.98 E-value=2.5e+02 Score=31.30 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTD 171 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (533)
-|..|+..|...|+.++|+++|.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 477888888888888888888888775
No 342
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.94 E-value=1.3e+02 Score=28.09 Aligned_cols=25 Identities=24% Similarity=0.042 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIF 236 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~ 236 (533)
|......+...|.+.|++.+|+..|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 5566677777788888888777666
No 343
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.59 E-value=53 Score=29.61 Aligned_cols=75 Identities=8% Similarity=0.015 Sum_probs=33.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHH
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE-NCQPDSWTFSSMITIC 259 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~p~~~~~~~li~~~ 259 (533)
-+..+.+.+.+.+++...++-++.... |..+-..++..||-.|++++|..-++-.-... ...+-..+|..+|++-
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 344444455555555555444443222 44444455555555555555544443332210 0023344555555444
No 344
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=62.12 E-value=1.8e+02 Score=29.32 Aligned_cols=286 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRA 191 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 191 (533)
|-++.-|+..|+-.+|.+..+++. .+.+.....-+++...+.-..+..+.-.+...+...+...-+-+.+++.|.
T Consensus 218 n~~l~eyv~~getrea~rciR~L~-----vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~ 292 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELG-----VSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRK 292 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhC-----CCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhh
Q ss_pred C--------ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 192 R--------YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 192 g--------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
+ +...|...|+.+.-+.+.-+-.--+++-..-...|+.+. ++.|++-.. .+|+-|...|
T Consensus 293 ~~slddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk~~~------------~IIqEYFlsg 359 (645)
T KOG0403|consen 293 GGSLDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKKDLT------------PIIQEYFLSG 359 (645)
T ss_pred ccccccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHHhhH------------HHHHHHHhcC
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH--HHHHHHHHHhcCCh--HHHHH
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR--FCGCLLNVMTQTPK--EELGK 339 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~--~~a~~ 339 (533)
+..+..+.++.+-.-.+.|-...+..-+..=.++..-+.|-.++..+.-.-+.+..+ .|..|+...-...- ..|-+
T Consensus 360 Dt~Evi~~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L~~e~fsteDv~~~F~mLLesaedtALD~p~a~~ 439 (645)
T KOG0403|consen 360 DTPEVIRSLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDLHGEVFSTEDVEKGFDMLLESAEDTALDIPRASQ 439 (645)
T ss_pred ChHHHHHHHHHcCCccccchHHHHHHHHHhccchhHHHHHHHHHHHhhcccCCHHHHHHHHHHHHhcchhhhccccccHH
Q ss_pred HHHH---------------------------------------------------------HHhcCCChhHHHHHHHHhh
Q 009506 340 LVEC---------------------------------------------------------VEKSNSKLGYVVKLLLEEQ 362 (533)
Q Consensus 340 ~~~~---------------------------------------------------------~~~~~~~~~~~~~~l~~~~ 362 (533)
.+.. -.+.-.+...-+..|+..|
T Consensus 440 elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~LLeEY 519 (645)
T KOG0403|consen 440 ELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDMLLEEY 519 (645)
T ss_pred HHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHHHHHHH
Q ss_pred hhhccHHHHHHHHHhhhccCc--cchhhHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009506 363 DIEGDFKKEATELFNSISKDV--KKAYCNCLIDLCVNLNLLENACKLLELGLTLEV 416 (533)
Q Consensus 363 ~~~g~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 416 (533)
...|+. .+|...++.+.-+. ...++.+++.+.-+.|+-.....+++..-..|+
T Consensus 520 ~~~Gdi-sEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 520 ELSGDI-SEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred Hhccch-HHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
No 345
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=61.37 E-value=1.8e+02 Score=29.14 Aligned_cols=87 Identities=15% Similarity=0.237 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH---H-----HHhcCChhHHHHHHHHhhhCCCC
Q 009506 245 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ---C-----YGKAQRTDDVVRALNRLPELGIT 316 (533)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~---~-----~~~~g~~~~a~~~~~~m~~~g~~ 316 (533)
+.||..+.|.+...++..-..+-...+|+...+.+ .|-.+-+.+||- + -.+...-++++++++.|...=-.
T Consensus 179 itPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~ 257 (669)
T KOG3636|consen 179 ITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSV 257 (669)
T ss_pred cCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhccc
Confidence 57888888888888888777888888888777754 233333333332 1 12344567788888887543222
Q ss_pred CCHHHHHHHHHHHhcC
Q 009506 317 PDDRFCGCLLNVMTQT 332 (533)
Q Consensus 317 p~~~~~~~ll~~~~~~ 332 (533)
-|..-+-.|...|+..
T Consensus 258 eDvpDffsLAqyY~~K 273 (669)
T KOG3636|consen 258 EDVPDFFSLAQYYSDK 273 (669)
T ss_pred ccchhHHHHHHHHhhc
Confidence 2444455566666543
No 346
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=60.67 E-value=34 Score=22.43 Aligned_cols=30 Identities=13% Similarity=0.296 Sum_probs=14.7
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 220 (533)
.|-..++..++++|.+.|+..+...|..++
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 344445555555555555554544444443
No 347
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=60.53 E-value=18 Score=20.74 Aligned_cols=24 Identities=17% Similarity=0.491 Sum_probs=15.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEMKA 136 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~ 136 (533)
.+..+|.+.|++++|.+.|+++.+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 345556667777777777777665
No 348
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=59.06 E-value=1.6e+02 Score=27.81 Aligned_cols=151 Identities=13% Similarity=0.081 Sum_probs=79.8
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 009506 120 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMG----RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR----A 191 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~ 191 (533)
..+++..|...+......+. ......+...|. ...+..+|.+.|..+.+.|. ......|-.+|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 34566666666666655322 122223333332 23346667777776666653 2233334444443 3
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh---
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-------YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC--- 261 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~--- 261 (533)
.+..+|...|++..+.|..+-..+...+-..|..-. +...|...|.+.-..+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----CHHHHHHHHHHHHcCCC
Confidence 467777778877777775533222333434443321 2236777777776654 23333333334432
Q ss_pred -cCChHHHHHHHHHHHHcCC
Q 009506 262 -RGKVSEAEAMFNEMLEAGF 280 (533)
Q Consensus 262 -~g~~~~A~~~~~~m~~~g~ 280 (533)
..+..+|...|....+.|.
T Consensus 203 v~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 3367777777777777654
No 349
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=58.74 E-value=40 Score=22.09 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=17.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
+.|-..++..++++|.+.|+..+...|..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44555555555555555555555555554443
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.42 E-value=1.7e+02 Score=27.80 Aligned_cols=68 Identities=19% Similarity=0.188 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh-----hCCCCCCHHH
Q 009506 253 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP-----ELGITPDDRF 321 (533)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~~ 321 (533)
+...+.|..+|.+.+|.++.+....-. +.+...+-.|+..+...|+--.+.+-++++. +.|+..|...
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 444566777777777777777665532 3455666677777777777666666665553 2355555443
No 351
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.38 E-value=64 Score=26.25 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 267 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
+..+-++.+....+.|+......-+.+|.+.+++..|.++|+-++.+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444555555666677777777777777777777777777666543
No 352
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.38 E-value=87 Score=24.75 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 287 LTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
|..|+..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66777777777777777777777765
No 353
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.34 E-value=3e+02 Score=30.39 Aligned_cols=52 Identities=10% Similarity=0.053 Sum_probs=24.6
Q ss_pred cCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhh--HHHHHHHHhcCC
Q 009506 347 SNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYC--NCLIDLCVNLNL 400 (533)
Q Consensus 347 ~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~--~~li~~~~~~g~ 400 (533)
.+.....+.+.+...|++... +.+.-.++.....+....| +.-+..|.+.+.
T Consensus 623 l~~~~~~ihn~ll~lya~~~~--~~ll~~le~~~~~~~~~~YDl~~alRlc~~~~~ 676 (911)
T KOG2034|consen 623 LGMTNPAIHNSLLHLYAKHER--DDLLLYLEIIKFMKSRVHYDLDYALRLCLKFKK 676 (911)
T ss_pred ccCcCHHHHHHHHHHhhcCCc--cchHHHHHHHhhccccceecHHHHHHHHHHhCc
Confidence 333344444666666665432 4444444444433222333 445555665554
No 354
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=57.20 E-value=2.2e+02 Score=28.66 Aligned_cols=198 Identities=13% Similarity=0.121 Sum_probs=108.4
Q ss_pred HHHHHhhcCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhH-----HHHHH
Q 009506 95 YDTRARNEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQ-----VKTIY 166 (533)
Q Consensus 95 l~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~li~~~~~~g~~~~-----a~~~~ 166 (533)
+|.+...-..+||.- .|+-+.+.=-++.--++++++.+.|... .-.|-+.-..++|..||+.++.+- =+.++
T Consensus 41 ~W~~~L~V~~K~d~l~~wd~iydLp~Q~~lr~DC~~~~d~l~n~ee~~v~vv~dlES~iTfYCK~Rn~~Y~~d~gWi~lL 120 (669)
T KOG3636|consen 41 DWMRLLGVSMKPNPLDDWDQIYDLPNQCALRNDCRKLADGLKNKEEDKVPVVSDLESFITFYCKKRNMDYIKDIGWITLL 120 (669)
T ss_pred HHHHHhcccCCCCchhhHHHHhCCchhhHHHHHHHHHHhhcCCchhhccchhHhhhhHhhhhhhccCCcccccccHHHHH
Confidence 344555555556543 4666655555555556677777777532 112333345667777777765442 23445
Q ss_pred HHHHHCCCCCCHHHHHHH---HHHHHhc--CChHHHHHHHHHH------------HHcCCCcCHHHHHHHHHHHHhcCCH
Q 009506 167 KEMTDNGLSPNWNTYASL---LRAYGRA--RYGEDTLSVYREM------------KEKGMQLSVTLYNTLLAMCADVGYT 229 (533)
Q Consensus 167 ~~m~~~g~~p~~~~~~~l---l~~~~~~--g~~~~a~~~~~~m------------~~~g~~~~~~~~~~li~~~~~~g~~ 229 (533)
+-+....+ |...+||.. ..-|.-. ..-.....+|+-+ ..+.+.||..+.|-+...++..-..
T Consensus 121 ~pl~~L~l-prsd~fN~F~ai~~kYIPkdcrpkg~~Fh~FRLLlqYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~St 199 (669)
T KOG3636|consen 121 EPLLLLNL-PRSDEFNVFFAITTKYIPKDCRPKGQIFHLFRLLLQYHDPELCNHLDTKKITPDMYTLNWFASLFASSMST 199 (669)
T ss_pred HHHHHhcC-CcchhhhhhHhhhhcccCCCCCCCCccchHHHHHHHhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhH
Confidence 55554443 444555533 3333321 1111223333322 2346788888888888777777777
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHH--------HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009506 230 DEAFEIFEDMKSSENCQPDSWTFSSMITI--------CSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 295 (533)
Q Consensus 230 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 295 (533)
+-...+++-..+.+ .|-.+.|-++|-. -.+...-+++.++++.|...--.-|+.-+-.|.+.|+
T Consensus 200 ev~~a~WdlY~qqa--DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 200 EVCHALWDLYIQQA--DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred HHHHHHHHHHHhcC--CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchhcccccchhHHHHHHHHh
Confidence 87888887777765 4554444444321 1234456788888888765322335555556666554
No 355
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=56.92 E-value=1.1e+02 Score=27.22 Aligned_cols=86 Identities=17% Similarity=0.200 Sum_probs=48.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 009506 224 ADVGYTDEAFEIFEDMKSSENCQP-----DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKA 297 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 297 (533)
.+.|++++|..-|.+.... |++ -.+.|..-..++.+.+.++.|..-.....+.+ |+ ......-..+|.+.
T Consensus 106 F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM 181 (271)
T ss_pred hhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence 4456666666666555443 222 13445555556666777777766666655533 32 22222234466677
Q ss_pred CChhHHHHHHHHhhhC
Q 009506 298 QRTDDVVRALNRLPEL 313 (533)
Q Consensus 298 g~~~~a~~~~~~m~~~ 313 (533)
..+++|+.=|+.+.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 7777777777777664
No 356
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=56.68 E-value=2.7e+02 Score=29.60 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 171 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (533)
+.+..|..|++.+... +.+.-.++++++... + ...+..++++....|......-+.+.+..
T Consensus 308 ~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~~---~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 308 PAAAKFLRLVRLLRTL-SEEQLEQLWRQLYEK---K-KKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred chHHHHHHHHHHHHhC-CHHHHHHHHHHHHhC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 3444555555554333 345555555555321 1 34555666666666655544444444443
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.54 E-value=93 Score=24.22 Aligned_cols=77 Identities=16% Similarity=0.028 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
++|..+.+++...+.....+.-+-...+..+|++ ++|+.+.+.+. -||...|-+|. -++.|..+++..-+..|...
T Consensus 22 qEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Y-q~Al~l~~~~~-~pdlepw~ALc--e~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 22 QEANTIADWLHLKGESEEAVQLIRLSSLMNRGDY-QSALQLGNKLC-YPDLEPWLALC--EWRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHccchH-HHHHHhcCCCC-CchHHHHHHHH--HHhhccHHHHHHHHHHHHhC
Confidence 7777777777766544333322234445566877 99999888885 57777776554 46788887777766666555
Q ss_pred c
Q 009506 415 E 415 (533)
Q Consensus 415 g 415 (533)
|
T Consensus 98 g 98 (115)
T TIGR02508 98 G 98 (115)
T ss_pred C
Confidence 4
No 358
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.43 E-value=2.8e+02 Score=29.75 Aligned_cols=197 Identities=13% Similarity=0.127 Sum_probs=115.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-HCCCCCC--HHHHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCH--
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK-AIGVKPN--MITYNNLLDTMG-RAKRPWQVKTIYKEMTDNGLSPNW-- 178 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~pd--~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~-- 178 (533)
+.+...|..||.. |++.++-+. ...+.|. ..++-.+...+. ...++++|+..+++.....-.++.
T Consensus 27 ~~~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 27 EEQLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hhhHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 4456667777765 445555555 3333343 334445555554 678899999999877643222222
Q ss_pred ---HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCcCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCC--CCCC
Q 009506 179 ---NTYASLLRAYGRARYGEDTLSVYREMKEK----GMQLSVTLYNTL-LAMCADVGYTDEAFEIFEDMKSSEN--CQPD 248 (533)
Q Consensus 179 ---~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~--~~p~ 248 (533)
.....++..|.+.+... |...+++..+. +..+-...|.-+ +..+...++...|.+.++.+..... ..|-
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 12335677777777766 88888876653 222223334433 3333334799999999987765321 1444
Q ss_pred HHHHHHHHHHHH--hcCChHHHHHHHHHHHHcC---------CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHhh
Q 009506 249 SWTFSSMITICS--CRGKVSEAEAMFNEMLEAG---------FEPNLFVLTSLIQCYG--KAQRTDDVVRALNRLP 311 (533)
Q Consensus 249 ~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~ 311 (533)
...+-.++.+.. +.+..+++.+..+++.... -.|-..+|..+++.++ ..|+++.+...++++.
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555554 4455677777777764321 1345667777777554 5677667776665553
No 359
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.33 E-value=2.3e+02 Score=28.67 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=18.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009506 262 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCY 294 (533)
Q Consensus 262 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 294 (533)
.++.+.|...+..|.+.|..|....-..++.++
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 356666666666666666555544444444443
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=56.32 E-value=1.1e+02 Score=31.00 Aligned_cols=120 Identities=9% Similarity=0.119 Sum_probs=71.4
Q ss_pred HcCChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 120 TAGNFDGC-LNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTL 198 (533)
Q Consensus 120 ~~g~~~~A-~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 198 (533)
..|++..| .++|+-+.+..-.|+....-+.| ....|+++.+...+...... +.....+...+++...+.|+++.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 34555544 44555555544445555444444 34567777777776655432 2344567777788888888888888
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009506 199 SVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 243 (533)
Q Consensus 199 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 243 (533)
.+-+.|....++ |..+........-..|-++++.-.++++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 888877776665 43333333333334566777777777765543
No 361
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.15 E-value=1.6e+02 Score=26.95 Aligned_cols=22 Identities=0% Similarity=0.089 Sum_probs=13.8
Q ss_pred HHHhcCChhHHHHHHHHhhhCC
Q 009506 293 CYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 293 ~~~~~g~~~~a~~~~~~m~~~g 314 (533)
.-+..+++.+|+.+|+++....
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3345566777777777765543
No 362
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.60 E-value=1.5e+02 Score=26.32 Aligned_cols=88 Identities=10% Similarity=0.032 Sum_probs=52.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009506 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS-----SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 295 (533)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 295 (533)
..+..+|++++|+.-++.... .+....+. -|.+.....|.+|+|..+++...+.++. ......--+.+.
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill 170 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence 456677777777777776654 23222332 3345566777777777777765543321 112223345677
Q ss_pred hcCChhHHHHHHHHhhhCC
Q 009506 296 KAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 296 ~~g~~~~a~~~~~~m~~~g 314 (533)
..|+-++|..-|++..+.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 7777777777777777664
No 363
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.40 E-value=1e+02 Score=25.11 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009506 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 273 (533)
Q Consensus 231 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 273 (533)
.+.++|+.|..+|+..--...|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555555555544434444555555555555555555555554
No 364
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.58 E-value=2.8e+02 Score=30.19 Aligned_cols=24 Identities=8% Similarity=0.234 Sum_probs=12.8
Q ss_pred HHHHHhhhhhccHHHHHHHHHhhhc
Q 009506 356 KLLLEEQDIEGDFKKEATELFNSIS 380 (533)
Q Consensus 356 ~~l~~~~~~~g~~~~~a~~~~~~~~ 380 (533)
..|+..|...++. ..|+.++-+..
T Consensus 509 e~La~LYl~d~~Y-~~Al~~ylklk 532 (846)
T KOG2066|consen 509 EVLAHLYLYDNKY-EKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHHccCh-HHHHHHHHhcc
Confidence 3455555555554 55655554444
No 365
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=54.22 E-value=1.5e+02 Score=25.93 Aligned_cols=75 Identities=12% Similarity=0.195 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcC----C-------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 230 DEAFEIFEDMKSSENCQPD-SWTFSSMITICSCRG----K-------VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 230 ~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g----~-------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
++|+.-|++.... .|+ ..++..+..+|...+ + +++|...|++..+ ..|+...|+.-+...
T Consensus 52 edAisK~eeAL~I---~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~--- 123 (186)
T PF06552_consen 52 EDAISKFEEALKI---NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA--- 123 (186)
T ss_dssp HHHHHHHHHHHHH----TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH---
T ss_pred HHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH---
Confidence 3344444444432 343 455555555554432 2 3344444444333 247777776666654
Q ss_pred CChhHHHHHHHHhhhCCC
Q 009506 298 QRTDDVVRALNRLPELGI 315 (533)
Q Consensus 298 g~~~~a~~~~~~m~~~g~ 315 (533)
++|.++..++.+.+.
T Consensus 124 ---~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 124 ---AKAPELHMEIHKQGL 138 (186)
T ss_dssp ---HTHHHHHHHHHHSSS
T ss_pred ---HhhHHHHHHHHHHHh
Confidence 245566666655543
No 366
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=54.15 E-value=2.1e+02 Score=27.60 Aligned_cols=109 Identities=13% Similarity=0.159 Sum_probs=59.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHH--HHHHHHHhcCCHHHH
Q 009506 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN--TLLAMCADVGYTDEA 232 (533)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A 232 (533)
..-...+|.++|++.++.| ..+|+ +......--...+.+.+++. ++.+|- .|.-+-.+.|+..+|
T Consensus 228 Ea~Ti~~AE~l~k~ALka~----e~~yr-------~sqq~qh~~~~~da~~rRDt--nvl~YIKRRLAMCARklGrlrEA 294 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAG----ETIYR-------QSQQCQHQSPQHEAQLRRDT--NVLVYIKRRLAMCARKLGRLREA 294 (556)
T ss_pred hhhhHHHHHHHHHHHHHHH----HHHHh-------hHHHHhhhccchhhhhhccc--chhhHHHHHHHHHHHHhhhHHHH
Confidence 3445667888888887654 12333 11111111122333444422 344443 233333457999999
Q ss_pred HHHHHHHHhCCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 233 FEIFEDMKSSENCQPDSW---TFSSMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
.++|+++.+.. |-.. .-..||.++....-+.++..++.+.-+..
T Consensus 295 ~K~~RDL~ke~---pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 295 VKIMRDLMKEF---PLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHhhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99998877642 3222 23467778777777777777766654433
No 367
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.93 E-value=2.5e+02 Score=28.05 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG--VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 171 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (533)
-..+.-+.+.|..+|+++.|++.|.+.+..- .+-.+..|-.+|..-.-.|+|..+.....+..+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4457778888889999999999998865431 112234455556666667777776666665554
No 368
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.33 E-value=1.9e+02 Score=26.55 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=19.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC
Q 009506 257 TICSCRGKVSEAEAMFNEMLEAGFEPN 283 (533)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~m~~~g~~p~ 283 (533)
..-+..+++.+|.++|++.....+.-+
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 334567889999999999876544333
No 369
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.49 E-value=30 Score=32.76 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=30.8
Q ss_pred CCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 009506 104 WRIDPNA-FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITY 146 (533)
Q Consensus 104 ~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~ 146 (533)
..||... |+..|....+.||+++|+.++++.++.|+.--..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3455555 568888888888888888888888887765444443
No 370
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=51.39 E-value=29 Score=18.77 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKA 136 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (533)
.|..+...|...|++++|...|+...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 345556666666667777666666543
No 371
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.36 E-value=66 Score=28.44 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 246 QPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
.|+..+|..++..+...|+.++|.++..++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555555443
No 372
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.30 E-value=52 Score=22.93 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 009506 218 TLLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~m~ 240 (533)
.+|.+|...|++++|.+.++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455555555555555554443
No 373
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=49.01 E-value=94 Score=30.08 Aligned_cols=88 Identities=15% Similarity=0.017 Sum_probs=57.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 009506 151 DTMGRAKRPWQVKTIYKEMTDNGLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYT 229 (533)
Q Consensus 151 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 229 (533)
+-|.+.|++++|++.|..-... .| |.+++..-..+|.+..++..|+.=.......+- .-+..|..-..+--..|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhH
Confidence 3478999999999999887754 45 899999999999999888877665555444310 0122333333333444555
Q ss_pred HHHHHHHHHHHh
Q 009506 230 DEAFEIFEDMKS 241 (533)
Q Consensus 230 ~~A~~~~~~m~~ 241 (533)
.+|.+=.+...+
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 666555555554
No 374
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.39 E-value=88 Score=27.64 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 175 SPNWNTYASLLRAYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 175 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 206 (533)
.|+..+|..++.++...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555555555555555555555555555544
No 375
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=48.28 E-value=1.7e+02 Score=25.69 Aligned_cols=91 Identities=12% Similarity=0.115 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC-----CCCCCH-HHHHHHHHHHHhcC----C-------hhHHHHHHHHHHHCC
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAI-----GVKPNM-ITYNNLLDTMGRAK----R-------PWQVKTIYKEMTDNG 173 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~pd~-~~~~~li~~~~~~g----~-------~~~a~~~~~~m~~~g 173 (533)
|...+.-+++..+..++.+++++.... .+.|+- .++..+-.+|...+ + +++|.+.|+...+
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~-- 108 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD-- 108 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--
Confidence 333444444555544554554443321 245664 56666666665433 2 3344555555544
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 009506 174 LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM 209 (533)
Q Consensus 174 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 209 (533)
..|+..+|+.-+....+ |-+++.++.+.+.
T Consensus 109 ~~P~ne~Y~ksLe~~~k------ap~lh~e~~~~~~ 138 (186)
T PF06552_consen 109 EDPNNELYRKSLEMAAK------APELHMEIHKQGL 138 (186)
T ss_dssp H-TT-HHHHHHHHHHHT------HHHHHHHHHHSSS
T ss_pred cCCCcHHHHHHHHHHHh------hHHHHHHHHHHHh
Confidence 35888888888877743 6666666666543
No 376
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=48.17 E-value=2.4e+02 Score=29.52 Aligned_cols=37 Identities=19% Similarity=0.233 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 009506 176 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 213 (533)
Q Consensus 176 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 213 (533)
++....-.++++... ++.+.+..++++|.+.|..+..
T Consensus 244 ~~~~~i~~ll~al~~-~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 244 IEPLLLFDILEALAA-KAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 444455556666544 7788888888888888877653
No 377
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=48.11 E-value=2.5e+02 Score=26.63 Aligned_cols=198 Identities=14% Similarity=0.123 Sum_probs=113.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHhcCChhHHHHHHHHHH----HCCCCCCHHHHH
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYN-------NLLDTMGRAKRPWQVKTIYKEMT----DNGLSPNWNTYA 182 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~-------~li~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~~~~ 182 (533)
+.+-.++.+++++|+..|.++...|+..|..+.| .+...|.+.|+...-.+.....+ +-.-+-...+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 4455678899999999999999999887766544 46677888888776555543332 221122344566
Q ss_pred HHHHHHHh-cCChHHHHHHHHHHHHcCCC-----cCHHHHHHHHHHHHhcCCHHHHHHHHH----HHHhCCCCCCCHHHH
Q 009506 183 SLLRAYGR-ARYGEDTLSVYREMKEKGMQ-----LSVTLYNTLLAMCADVGYTDEAFEIFE----DMKSSENCQPDSWTF 252 (533)
Q Consensus 183 ~ll~~~~~-~g~~~~a~~~~~~m~~~g~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~~~~~p~~~~~ 252 (533)
+|+..+-. ...++..+.+.....+...+ .-...=.-+|..+.+.|.+.+|+.+.. ++++-.. +++.++.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DD-K~~Li~v 167 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDD-KINLITV 167 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcC-ccceeeh
Confidence 66666644 34566666666655443211 112233457888999999999988764 4444443 5554443
Q ss_pred HHH-HHHHHhcCChHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHhhh
Q 009506 253 SSM-ITICSCRGKVSEAEAMFNEMLE----AGFEPNLFVLTSLIQCYG--KAQRTDDVVRALNRLPE 312 (533)
Q Consensus 253 ~~l-i~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~ 312 (533)
..+ -.+|-.-.++.++..-+...+. .-.+|-.+.-..|+.+-. ...++..|..+|-+..+
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 322 2344444444444444433322 123444444444555433 33456667766666544
No 378
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=47.52 E-value=2.6e+02 Score=26.75 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=39.9
Q ss_pred HhcCCHHHHHHHH-HHHHhCCCCCCCH----HHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 224 ADVGYTDEAFEIF-EDMKSSENCQPDS----WTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 224 ~~~g~~~~A~~~~-~~m~~~~~~~p~~----~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
.+...+++..... ++|++.+ -|+. +.|..+|++---+++ -.-|.+.++. ..+|..|+.+++..
T Consensus 266 s~e~p~~evi~~VKee~k~~n--lPe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~ 334 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNN--LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQ 334 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcC--CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcC
Confidence 3444556655555 4555555 3554 356666665432222 1123333333 34588899999999
Q ss_pred CChhHHHH
Q 009506 298 QRTDDVVR 305 (533)
Q Consensus 298 g~~~~a~~ 305 (533)
|+.+..+-
T Consensus 335 g~sEL~Ll 342 (412)
T KOG2297|consen 335 GQSELELL 342 (412)
T ss_pred ChHHHHHH
Confidence 98876553
No 379
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.50 E-value=1.3e+02 Score=26.30 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=15.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 009506 220 LAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~m~~ 241 (533)
+-.|.+.|.+++|.++|++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456777777777777777665
No 380
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.39 E-value=23 Score=29.09 Aligned_cols=29 Identities=28% Similarity=0.429 Sum_probs=15.6
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 222 (533)
|.-.+|..+|..|.+.|-.||. |+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 4444555666666666655553 4555443
No 381
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.12 E-value=2.1e+02 Score=25.58 Aligned_cols=54 Identities=13% Similarity=0.048 Sum_probs=27.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 153 MGRAKRPWQVKTIYKEMTDNGLSPNW-----NTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+.+.|++++|..-|.+.++.. ++.. ..|..-..++.+.+.++.|+.--...++.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence 556677777777777666542 2211 22333334444555555555444444443
No 382
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=47.00 E-value=1.2e+02 Score=22.83 Aligned_cols=11 Identities=0% Similarity=0.169 Sum_probs=4.0
Q ss_pred hHHHHHHHHHH
Q 009506 194 GEDTLSVYREM 204 (533)
Q Consensus 194 ~~~a~~~~~~m 204 (533)
.+.|.+++..+
T Consensus 52 ~~~ar~LL~~L 62 (88)
T cd08819 52 ESGARELLKRI 62 (88)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 383
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=46.76 E-value=3e+02 Score=27.24 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------------CCCC------CCCHHHHHHH---HHHHHhcCC
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKS------------------SENC------QPDSWTFSSM---ITICSCRGK 264 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------------------~~~~------~p~~~~~~~l---i~~~~~~g~ 264 (533)
.+.++-.+-..+...|+.+.|.+++++..- .|.+ .-|...|.++ |....+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 344555555666667776666666554311 1111 1144445544 567788999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChhHHHHHHHHhhh
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG-KAQRTDDVVRALNRLPE 312 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~ 312 (533)
+..|.++.+-+......-|......+|+.|+ ++++++-.+++++....
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 9999999999888665557777778888775 67777777777776544
No 384
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=46.67 E-value=1.8e+02 Score=28.08 Aligned_cols=120 Identities=7% Similarity=0.088 Sum_probs=63.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCChHHHHH
Q 009506 122 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY--ASLLRAYGRARYGEDTLS 199 (533)
Q Consensus 122 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~a~~ 199 (533)
--+.+|.++|++..+.| ..+|+. -..+...|. ..+.+.+++ .|+.+| ..|.-+..|.|++.+|.+
T Consensus 230 ~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~------~~da~~rRD--tnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 230 TTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSP------QHEAQLRRD--TNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhcc------chhhhhhcc--cchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 34566777777665532 223431 111111221 223344443 344444 344555567899999999
Q ss_pred HHHHHHHcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009506 200 VYREMKEKG-MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS 254 (533)
Q Consensus 200 ~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 254 (533)
.|+.+.+.- +..-......||.++....-+.+...++-+..+....+.-...|++
T Consensus 297 ~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTa 352 (556)
T KOG3807|consen 297 IMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTA 352 (556)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHH
Confidence 998776541 1111233456788888777777777776555544421223445553
No 385
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=46.14 E-value=1.1e+02 Score=25.63 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=28.9
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 96 DTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 157 (533)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g 157 (533)
...+++.|+++++.= ..++..+.+.++.-.|.++|+++.+.+..-+..|--..++.+...|
T Consensus 9 ~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334555555555442 3345555555555556666666655544433333333333333333
No 386
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.10 E-value=59 Score=24.00 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=24.7
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHH--HHHHHHHHHhcCCh-HHHHH
Q 009506 296 KAQRTDDVVRALNRLPELGITPDDR--FCGCLLNVMTQTPK-EELGK 339 (533)
Q Consensus 296 ~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~-~~a~~ 339 (533)
...+.++|+..|+...+.-..+... ++..++.+++..|+ .+..+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777776665543332222 56666666666666 44444
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.20 E-value=66 Score=23.75 Aligned_cols=14 Identities=14% Similarity=-0.095 Sum_probs=5.6
Q ss_pred HHHHHHHhcCChHH
Q 009506 183 SLLRAYGRARYGED 196 (533)
Q Consensus 183 ~ll~~~~~~g~~~~ 196 (533)
.|+.+|+..|++.+
T Consensus 48 ~l~qA~~e~Gkyr~ 61 (80)
T PF10579_consen 48 YLIQAHMEWGKYRE 61 (80)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 388
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=44.82 E-value=5.2e+02 Score=29.39 Aligned_cols=123 Identities=11% Similarity=-0.059 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHhcCChhH-HHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHH-hcCCChhHHHHHH
Q 009506 282 PNLFVLTSLIQCYGKAQRTDD-VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE-KSNSKLGYVVKLL 358 (533)
Q Consensus 282 p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~-~~~~~~~~~~~~l 358 (533)
++...-...+.++...+..+. +...+..+.+ .+|...-...+.++...+. ..+...+.... ..++..- ..-
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR---~~A 827 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVR---QGA 827 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHH---HHH
Confidence 455555555556655554332 2333333332 2455556666666666665 33322222222 1111111 112
Q ss_pred HHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 359 LEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGL 412 (533)
Q Consensus 359 ~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 412 (533)
+.++...+. +++...+-.+-.+++..+=-..+.++.+.+....+...+....
T Consensus 828 a~aL~~l~~--~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 828 ARALAGAAA--DVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHHhccc--cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 222222221 3344444444444455555555555655432334554444433
No 389
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=44.65 E-value=1.2e+02 Score=32.23 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCChhHHH-HHHHH
Q 009506 335 EELGKLVECVEKSNSKLGYVV-KLLLE 360 (533)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~-~~l~~ 360 (533)
.+|.+.+-.+.+...-+..+. .+|.+
T Consensus 512 ~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 512 REAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 555554444444444344444 33333
No 390
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.45 E-value=1.4e+02 Score=32.82 Aligned_cols=175 Identities=14% Similarity=0.108 Sum_probs=100.4
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009506 121 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSV 200 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 200 (533)
++++++.+.+.+.-.--| .++|.-+-+.|.++-|+...+.=.. -...+..+|+++.|++.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~t------------RF~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERT------------RFELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcch------------heeeehhcCCHHHHHHH
Confidence 345666655554432211 3455556677777766655443221 12344567888888766
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 009506 201 YREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280 (533)
Q Consensus 201 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 280 (533)
-..+- |..+|..|.....+.|+.+-|+..|++.+. |.-|--.|.-.|+.++-.++.+....+
T Consensus 666 akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn----------fekLsfLYliTgn~eKL~Km~~iae~r-- 727 (1202)
T KOG0292|consen 666 AKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN----------FEKLSFLYLITGNLEKLSKMMKIAEIR-- 727 (1202)
T ss_pred HHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh----------hhheeEEEEEeCCHHHHHHHHHHHHhh--
Confidence 54432 677899999999999999999999988764 222333455677777776666555432
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 009506 281 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEK 346 (533)
Q Consensus 281 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~ 346 (533)
-|..+ ..+.-.-.|++++-.++++..- ..|- ..+.+. .+|. ++|.++.++..+
T Consensus 728 -~D~~~---~~qnalYl~dv~ervkIl~n~g---~~~l-----aylta~-~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 728 -NDATG---QFQNALYLGDVKERVKILENGG---QLPL-----AYLTAA-AHGLEDQAEKLGEELEK 781 (1202)
T ss_pred -hhhHH---HHHHHHHhccHHHHHHHHHhcC---cccH-----HHHHHh-hcCcHHHHHHHHHhhcc
Confidence 23222 1122223577777666666542 2221 122222 3454 777788777665
No 391
>PHA02875 ankyrin repeat protein; Provisional
Probab=44.23 E-value=86 Score=31.58 Aligned_cols=177 Identities=15% Similarity=0.025 Sum_probs=87.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcC
Q 009506 117 LYGTAGNFDGCLNVYEEMKAIGVKPNMIT--YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN--TYASLLRAYGRAR 192 (533)
Q Consensus 117 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g 192 (533)
..++.|+.+-+.. +.+.|..|+... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...++.|
T Consensus 8 ~A~~~g~~~iv~~----Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 8 DAILFGELDIARR----LLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHhCCHHHHHH----HHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 3455677655444 445676665432 234455556677765 445556677655532 1223455666778
Q ss_pred ChHHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHhcCChHH
Q 009506 193 YGEDTLSVYREMKEKGMQLSVT---LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT--FSSMITICSCRGKVSE 267 (533)
Q Consensus 193 ~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~g~~~~ 267 (533)
+.+.+..+++ .|...+.. .-.+.+...+..|+.+-+..++ +.|. .++... -.+.+...+..|+.+-
T Consensus 80 ~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll----~~ga-d~~~~~~~g~tpLh~A~~~~~~~~ 150 (413)
T PHA02875 80 DVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLI----ARGA-DPDIPNTDKFSPLHLAVMMGDIKG 150 (413)
T ss_pred CHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHH----hCCC-CCCCCCCCCCCHHHHHHHcCCHHH
Confidence 8877665554 33221110 0123344455667765444444 3442 333221 1234455567777665
Q ss_pred HHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH
Q 009506 268 AEAMFNEMLEAGFEPN---LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD 319 (533)
Q Consensus 268 A~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 319 (533)
+..++ +.|..++ ....+.|..+ +..|+.+ +.+.+.+.|..++.
T Consensus 151 v~~Ll----~~g~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~ 196 (413)
T PHA02875 151 IELLI----DHKACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDY 196 (413)
T ss_pred HHHHH----hcCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCc
Confidence 54444 4444333 2233344433 4456654 34445556666554
No 392
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.23 E-value=3.4e+02 Score=27.11 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=34.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCChHHHHHHHHHHHHc
Q 009506 152 TMGRAKRPWQVKTIYKEMTDNGLSPNWN--TYASLLRAYGR--ARYGEDTLSVYREMKEK 207 (533)
Q Consensus 152 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~--~g~~~~a~~~~~~m~~~ 207 (533)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|.. .-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344677888888888888776 555444 44455555543 45566777777766554
No 393
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=44.17 E-value=3.1e+02 Score=26.66 Aligned_cols=85 Identities=19% Similarity=0.321 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 009506 217 NTLLAMCADVGYTDEAFEIFEDMKSS---ENCQPDSWTFS--SMITICSCRGKVSEAEAMFNEMLE-----AGFEPNLFV 286 (533)
Q Consensus 217 ~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 286 (533)
..++...-+.++.++|+++++++.+. .. .||.+.|. .+.+.+...||..++.+++++..+ .|+.|++.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~-e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYK-EPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 34455556667899999999887653 22 56666664 556677788999999999888776 577776544
Q ss_pred -HHHHHH-HHHhcCChhH
Q 009506 287 -LTSLIQ-CYGKAQRTDD 302 (533)
Q Consensus 287 -~~~li~-~~~~~g~~~~ 302 (533)
|..+-. .|-..|++..
T Consensus 158 ~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 158 SFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred hHHHHHHHHHHHHHhHHH
Confidence 444443 3344455443
No 394
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.16 E-value=1.5e+02 Score=24.83 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=18.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 227 (533)
++.+...+..-.|.++|+++.+.+...+..|-..-++.+...|
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3333333333444444444444444444444334444444444
No 395
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=44.12 E-value=1.6e+02 Score=23.27 Aligned_cols=26 Identities=8% Similarity=0.371 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
|..|+..|...|..++|.+++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 77777777788888888888777665
No 396
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=44.07 E-value=1.2e+02 Score=26.16 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=33.5
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 96 DTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159 (533)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 159 (533)
...++..|++.+..-. .++..+...++.-.|.++++.+.+.+...+..|-.-.|..+.+.|-+
T Consensus 14 ~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 14 EKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3345555666655543 33444444445556666666666665555555544455555555543
No 397
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.82 E-value=59 Score=22.63 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHH
Q 009506 253 SSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
-.+|.+|...|++++|.++++++.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345555666666666665555543
No 398
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.58 E-value=3.1e+02 Score=27.40 Aligned_cols=56 Identities=9% Similarity=0.065 Sum_probs=41.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHh--cCChhHHHHHHHHHHHC
Q 009506 116 KLYGTAGNFDGCLNVYEEMKAIGVKPNMI--TYNNLLDTMGR--AKRPWQVKTIYKEMTDN 172 (533)
Q Consensus 116 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--~~~~li~~~~~--~g~~~~a~~~~~~m~~~ 172 (533)
..+.+.++|..|.++|+++... +.++.. .|..+..+|.. .-++.+|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445789999999999999987 555554 45555566653 45677899999887764
No 399
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=43.44 E-value=2.8e+02 Score=30.23 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=22.4
Q ss_pred HHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009506 98 RARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA 136 (533)
Q Consensus 98 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (533)
.+.+.|+..+......+++.. .|+...|+.+++++..
T Consensus 190 Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 190 VLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 334556666666666555544 4677777777766543
No 400
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.83 E-value=7.9e+02 Score=30.92 Aligned_cols=150 Identities=11% Similarity=0.072 Sum_probs=92.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEM----KAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m----~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 188 (533)
+|..+--+++.+.+|+..++.- ++. .-...-|-.+...|+.-+++|.+..+...-.. .|+ ...-|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHH
Confidence 4555666888999999999883 221 11223344455588999999988777764221 122 22334455
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH-HHHHHhcCChHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM-ITICSCRGKVSE 267 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l-i~~~~~~g~~~~ 267 (533)
...|+++.|...|+.+.+.+.. ...+++-++......|.++.+.-..+.....- .+....|+++ +.+--+.++++.
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~--se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR--SEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc--CHHHHHHHHHHHHHHhhhcchhh
Confidence 6679999999999999877432 36677777766666777777766665554432 2333333333 344456666666
Q ss_pred HHHHHH
Q 009506 268 AEAMFN 273 (533)
Q Consensus 268 A~~~~~ 273 (533)
.+..+.
T Consensus 1537 ~e~~l~ 1542 (2382)
T KOG0890|consen 1537 LESYLS 1542 (2382)
T ss_pred hhhhhh
Confidence 665544
No 401
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.31 E-value=3.1e+02 Score=26.07 Aligned_cols=68 Identities=12% Similarity=0.180 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 009506 249 SWTFSSMITICSCRGKVSEAEAMFNEMLE----AGFEPNLFVLT-SLIQCYGKAQRTDDVVRALNRLPELGIT 316 (533)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~ 316 (533)
...+..+...|++-++.+.+.+..++..+ .|.+.|+..-- .|.-.|....-+++-++..+.|.+.|..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 44555666666666666666666555432 34444432211 1112233333345555566666666543
No 402
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.25 E-value=3.5e+02 Score=26.65 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HH
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW----NT 180 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~ 180 (533)
.|++.+.-.++.-|....+.+....+-+... .+.+.+-.++.+.+.+...+++..+....= .|.. ..
T Consensus 72 ~~~~~~li~~~~~FV~~~n~eqlr~as~~f~--------~lc~~l~~~~~~~~~p~~gi~ii~~av~k~-~~~~~qlT~~ 142 (422)
T KOG2582|consen 72 NPDPETLIELLNDFVDENNGEQLRLASEIFF--------PLCHDLTEAVVKKNKPLRGIRIIMQAVDKM-QPSNGQLTSI 142 (422)
T ss_pred CCCHHHHHHHHHHHHHhcChHHHhhHHHHHH--------HHHHHHHHHHHhcCCccccchHHHHHHHHh-ccCccchhhh
Confidence 3677777777777776665444333322222 245677777777777766555555444321 1221 23
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH-HHc-----CCCcCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHh
Q 009506 181 YASLLRAYGRARYGEDTLSVYREM-KEK-----GMQLSVTLYNTLLA--MCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 181 ~~~ll~~~~~~g~~~~a~~~~~~m-~~~-----g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~ 241 (533)
..-++..+.+.+++.-++..++.- .+. ...|.......+=. .|....+++.|+.+|+...-
T Consensus 143 H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 143 HADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVT 211 (422)
T ss_pred HHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHh
Confidence 445566666777776665544321 111 11211111111111 13445789999999988874
No 403
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=42.00 E-value=2.5e+02 Score=24.92 Aligned_cols=180 Identities=11% Similarity=0.142 Sum_probs=0.0
Q ss_pred HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 206 EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-------DSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 206 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
+.|+.++...++-++..+.+..-...-...+-.++.+..... |......=+..|-+.||+.+--.+|-....
T Consensus 1 eAGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~- 79 (233)
T PF14669_consen 1 EAGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKM- 79 (233)
T ss_pred CCcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHh-
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHH
Q 009506 279 GFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR-FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVK 356 (533)
Q Consensus 279 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~ 356 (533)
+|-+.+++...-....+..-...+-... -|..+..+-++... +++.+.+- +.+-.
T Consensus 80 --------------gce~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L---------GRiGi 136 (233)
T PF14669_consen 80 --------------GCEKFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL---------GRIGI 136 (233)
T ss_pred --------------hcCCHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh---------hHHHH
Q ss_pred HHHHhhhhhccHHHHHHHHHhhh-----------------ccCccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009506 357 LLLEEQDIEGDFKKEATELFNSI-----------------SKDVKKAYCNCLIDLCVNLNLLENACKLLEL 410 (533)
Q Consensus 357 ~l~~~~~~~g~~~~~a~~~~~~~-----------------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 410 (533)
.++..|.+..+| .+.+.+++.+ ...+.-...|.-...+.+.|..|.|+.++++
T Consensus 137 S~m~~Yhk~~qW-~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQW-SKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
No 404
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=41.72 E-value=4.2e+02 Score=28.38 Aligned_cols=74 Identities=14% Similarity=0.117 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCChHH------HHHHHHHHHHcCCCCCHHHHHHH
Q 009506 218 TLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTFSSMITICSCRGKVSE------AEAMFNEMLEAGFEPNLFVLTSL 290 (533)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~------A~~~~~~m~~~g~~p~~~~~~~l 290 (533)
+|+.+|...|++..+.++++.....+. -+.-...||..|+.+.+.|.++. |.+++++ ..+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHHH
Confidence 677777777777777777777654321 02234556667777777776432 2222222 2244566666666
Q ss_pred HHHH
Q 009506 291 IQCY 294 (533)
Q Consensus 291 i~~~ 294 (533)
+++-
T Consensus 110 ~~~s 113 (1117)
T COG5108 110 CQAS 113 (1117)
T ss_pred HHhh
Confidence 6554
No 405
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.25 E-value=4.3e+02 Score=27.39 Aligned_cols=33 Identities=9% Similarity=0.259 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 211 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 211 (533)
..+..++++....+....|+.++++|.+.|..|
T Consensus 249 ~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~ 281 (484)
T PRK14956 249 EFLTSFIKSLIDPDNHSKSLEILESLYQEGQDI 281 (484)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCH
Confidence 333444444333333344555555555555443
No 406
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.15 E-value=52 Score=31.27 Aligned_cols=41 Identities=10% Similarity=0.136 Sum_probs=26.1
Q ss_pred CCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 009506 141 PNMIT-YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181 (533)
Q Consensus 141 pd~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 181 (533)
||..+ ||..|....+.||+++|++++++..+.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44444 457777777777777777777777777754433443
No 407
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.78 E-value=2.1e+02 Score=31.54 Aligned_cols=158 Identities=18% Similarity=0.113 Sum_probs=93.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
++|.-+.+.|..+-|+.+.++-+.+ ...+..+|+++.|++.-+.+ -+..+|..|...-...
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~q 685 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQ 685 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHh
Confidence 3455556667777776665443322 12456778888888776554 4677888899888888
Q ss_pred CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHH
Q 009506 298 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 376 (533)
Q Consensus 298 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~ 376 (533)
|+.+-|...|++.+.. +.|--.|.-.|+ +...++.+..+..+-....+.++| |. |+. ++-..++
T Consensus 686 gn~~IaEm~yQ~~knf---------ekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnal---Yl--~dv-~ervkIl 750 (1202)
T KOG0292|consen 686 GNHQIAEMCYQRTKNF---------EKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNAL---YL--GDV-KERVKIL 750 (1202)
T ss_pred cchHHHHHHHHHhhhh---------hheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHH---Hh--ccH-HHHHHHH
Confidence 9988888888877643 223334445566 555555554443332222222222 11 443 5555666
Q ss_pred hhhccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 377 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 377 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
+.....+ ..|- .-..+|.-++|.++.++....+
T Consensus 751 ~n~g~~~--layl----ta~~~G~~~~ae~l~ee~~~~~ 783 (1202)
T KOG0292|consen 751 ENGGQLP--LAYL----TAAAHGLEDQAEKLGEELEKQV 783 (1202)
T ss_pred HhcCccc--HHHH----HHhhcCcHHHHHHHHHhhcccc
Confidence 5544321 1221 1245688889999998886644
No 408
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=40.70 E-value=1e+02 Score=20.76 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=21.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLL 150 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li 150 (533)
+.-++.+.|++++|++..+.+.+ +.|+..-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 44566778888888888888776 356655444443
No 409
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=40.63 E-value=3.6e+02 Score=26.30 Aligned_cols=84 Identities=12% Similarity=0.117 Sum_probs=45.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHH-----cCCCcCHH-HH
Q 009506 148 NLLDTMGRAKRPWQVKTIYKEMTDN---GLSPNWNTYA--SLLRAYGRARYGEDTLSVYREMKE-----KGMQLSVT-LY 216 (533)
Q Consensus 148 ~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~-~~ 216 (533)
.++...-+.++.++|++.++++.+. .-.|+.+.|- ...+.+...|++.++.+++++.++ .|+++++. .|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3444444555677777777766532 1245555543 334445556777777777776665 46665443 24
Q ss_pred HHHHHHHH-hcCCHHH
Q 009506 217 NTLLAMCA-DVGYTDE 231 (533)
Q Consensus 217 ~~li~~~~-~~g~~~~ 231 (533)
+.+-.-|. +.|++..
T Consensus 160 Y~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFAS 175 (380)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 44443333 3355443
No 410
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.04 E-value=2e+02 Score=25.29 Aligned_cols=48 Identities=15% Similarity=0.376 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhCCCCCCC--HHH-----HHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 229 TDEAFEIFEDMKSSENCQPD--SWT-----FSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 229 ~~~A~~~~~~m~~~~~~~p~--~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
++.|+.+|+.+.+... .|. ... -...+..|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~-~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFS-LPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 4567777776666442 221 111 12345567788888888888877765
No 411
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.48 E-value=2.9e+02 Score=26.34 Aligned_cols=111 Identities=12% Similarity=0.087 Sum_probs=62.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009506 148 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227 (533)
Q Consensus 148 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 227 (533)
.++....+.++..+..+.++.+.. ...-...++.+...|++..|++++.+..+.= . +..-|+.+=..- .
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~---~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLS---S 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHh---H
Confidence 344555555666666666666653 2344556777778899999988888776530 0 111111111111 1
Q ss_pred CHHHHHH--------HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 009506 228 YTDEAFE--------IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFN 273 (533)
Q Consensus 228 ~~~~A~~--------~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 273 (533)
++.+-.. .|..+-. .-|...|..++.+|.-.|+...+.+-+.
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~----~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQ----DFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 1222222 2233332 5688999999999999998766654433
No 412
>PF13934 ELYS: Nuclear pore complex assembly
Probab=38.76 E-value=3.1e+02 Score=25.05 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=16.8
Q ss_pred HHHHHHHhhhccCccchhhHHHHHHHHhcC
Q 009506 370 KEATELFNSISKDVKKAYCNCLIDLCVNLN 399 (533)
Q Consensus 370 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~g 399 (533)
.+|+.+-+..........+..++..+....
T Consensus 157 ~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 157 TEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 666666665554333446666666666443
No 413
>PRK09462 fur ferric uptake regulator; Provisional
Probab=38.50 E-value=2e+02 Score=24.10 Aligned_cols=58 Identities=14% Similarity=0.279 Sum_probs=27.7
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009506 169 MTDNGLSPNWNTYASLLRAYGR-ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227 (533)
Q Consensus 169 m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 227 (533)
+.+.|++.+..=. .++..+.. .+..-.|.++++.+.+.+...+..|..--|+.+...|
T Consensus 8 l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3445554443322 22333332 2344556666666666655555555444445554444
No 414
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.48 E-value=3.6e+02 Score=25.72 Aligned_cols=118 Identities=12% Similarity=0.148 Sum_probs=63.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC
Q 009506 254 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 333 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 333 (533)
.++..+.+.+++....+.+..+.. ...-...++.+...|++..|++++.+..+. +..+..
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~------------l~~l~~-- 162 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL------------LEELKG-- 162 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH------------HHhccc--
Confidence 445555555566666666655532 333445667777888888888888877542 111110
Q ss_pred hHHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHH
Q 009506 334 KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLL 408 (533)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 408 (533)
+.|+............. ..+.....|.++....|+..|..++.+|.-.|+.+.+.+=+
T Consensus 163 -------~~c~~~L~~~L~e~~~~----------i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 163 -------YSCVRHLSSQLQETLEL----------IEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred -------chHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 01111111111111100 11223333445555568889999999999999877765433
No 415
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=38.01 E-value=2.1e+02 Score=30.08 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=26.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
+...+.|...+|..++.+..... .....++..+.++|....+++.|.+.|++..+
T Consensus 650 ~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~ 704 (886)
T KOG4507|consen 650 NLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNISGALEAFRQALK 704 (886)
T ss_pred HHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhHHHHHHHHHHHh
Confidence 33334444445555554443322 23334455555555555555555555555444
No 416
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.86 E-value=2e+02 Score=24.92 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=17.2
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 227 (533)
+..-.|.++++.+.+.+...+..|-.--|..+...|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 334445555555555554444444443444444443
No 417
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=37.66 E-value=72 Score=33.90 Aligned_cols=62 Identities=10% Similarity=0.079 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 177 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 177 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 240 (533)
+...-.-++..|.+.|..+.|..+.+.+-.+-. ...-|..-+..+.++|+...+-.+-+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334445555556666666666666554443311 12334555555566666655555544443
No 418
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=37.59 E-value=4.3e+02 Score=26.34 Aligned_cols=104 Identities=14% Similarity=0.177 Sum_probs=58.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC--CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCH-----HHHH
Q 009506 219 LLAMCADVGYTDEAFEIFEDMKSS--ENCQPD--SWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPNL-----FVLT 288 (533)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~m~~~--~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~-----~~~~ 288 (533)
|...+-..|++++|..++.+..-. |...-. ....---++.|.-.+|+-.|.-+-++....-+ .||. .-|+
T Consensus 137 L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~ 216 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYE 216 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHH
Confidence 334555677777777776655321 100000 11111235667777777777766666544322 2332 3477
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHH
Q 009506 289 SLIQCYGKAQRTDDVVRALNRLPELG-ITPDDRFC 322 (533)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~ 322 (533)
.|++.....+.+=.+.+.|+..-+.| ++-|+.-|
T Consensus 217 lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw 251 (439)
T KOG1498|consen 217 LMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKW 251 (439)
T ss_pred HHHHhcccccchhhHHHHHHHHhcccccccChhhh
Confidence 78888778888888888888876654 33344433
No 419
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.30 E-value=3.4e+02 Score=25.17 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=24.3
Q ss_pred HHHHHHHhhhcc------CccchhhHHHHHHHHhcCCHHHHHHHHH
Q 009506 370 KEATELFNSISK------DVKKAYCNCLIDLCVNLNLLENACKLLE 409 (533)
Q Consensus 370 ~~a~~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~ 409 (533)
..|...++.-.. ..+..+...|+.+| ..|+.+++-+++.
T Consensus 207 v~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 207 VQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 667777776322 22445777788776 4577777766554
No 420
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=36.90 E-value=1.8e+02 Score=21.88 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=22.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 129 NVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 129 ~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
++|+-....|+..|...|..++....-+=-++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555555555555555555555544444555555555554
No 421
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=36.49 E-value=2.5e+02 Score=29.93 Aligned_cols=74 Identities=18% Similarity=0.091 Sum_probs=54.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhH------HHHHHHHHHHCCCCCCHHHHHHH
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQ------VKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~li~~~~~~g~~~~------a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
+|..+|..+|++..+.++++..... |-+.=...||..|+...+.|.++- +.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7999999999999999999998753 333345678888999999997753 334444333 45677888877
Q ss_pred HHHHH
Q 009506 185 LRAYG 189 (533)
Q Consensus 185 l~~~~ 189 (533)
+.+-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 76653
No 422
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.45 E-value=3.9e+02 Score=28.77 Aligned_cols=90 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred hhhHHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-------------CCHHHHHHHHHHHH
Q 009506 88 SKLKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-------------PNMITYNNLLDTMG 154 (533)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------pd~~~~~~li~~~~ 154 (533)
.......+...+.+.|+..+......++. .-.|+...|+.+++++...|-. .+......++.++.
T Consensus 185 ~eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~ 262 (618)
T PRK14951 185 PETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA 262 (618)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHH
Q 009506 155 RAKRPWQVKTIYKEMTDNGLSPNWNT 180 (533)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~g~~p~~~~ 180 (533)
. |+...+++++++|.+.|..+....
T Consensus 263 ~-~d~~~al~~l~~l~~~G~~~~~il 287 (618)
T PRK14951 263 Q-GDGRTVVETADELRLNGLSAASTL 287 (618)
T ss_pred c-CCHHHHHHHHHHHHHcCCCHHHHH
No 423
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.14 E-value=1.9e+02 Score=21.86 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=28.9
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 198 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 198 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
.++++.+.++|+- +......+-.+-...|+.+.|.+++..+. .| | ..|...+.++...|.-+.|
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg---~--~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK---E--GWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC---C--cHHHHHHHHHHHcCchhhh
Confidence 4445555555432 33333333222234455666666666555 32 2 2344555555555544433
No 424
>PRK09857 putative transposase; Provisional
Probab=35.96 E-value=2.6e+02 Score=26.74 Aligned_cols=66 Identities=9% Similarity=0.162 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 212 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 212 (533)
+..++.-..+.++.++..++++.+.+. ++......-++..-+.+.|.-+++.++..+|...|+..+
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344555445556666566666655544 222223333444555555555555566666666655533
No 425
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.88 E-value=1.6e+02 Score=22.29 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=11.1
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 009506 256 ITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 256 i~~~~~~g~~~~A~~~~~~m~ 276 (533)
.......|+.++|.+.+++..
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 334445555555555555543
No 426
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=35.53 E-value=54 Score=23.17 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 173 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 173 (533)
..++.++..+++-.-.++++..+.+..+.|
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444444444444444444444
No 427
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.36 E-value=2.4e+02 Score=22.90 Aligned_cols=43 Identities=7% Similarity=0.124 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 009506 267 EAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNR 309 (533)
Q Consensus 267 ~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~ 309 (533)
.+.++|..|...|+.-. ..-|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 89999999988877555 56677888888899999999998875
No 428
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=35.34 E-value=6.7e+02 Score=27.95 Aligned_cols=287 Identities=15% Similarity=0.123 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHhc----CChhHHHHHHHH----HHHCCCCCCHHHHHHHHHHHH
Q 009506 125 DGCLNVYEEMKAIGVK-------PNMITYNNLLDTMGRA----KRPWQVKTIYKE----MTDNGLSPNWNTYASLLRAYG 189 (533)
Q Consensus 125 ~~A~~~~~~m~~~g~~-------pd~~~~~~li~~~~~~----g~~~~a~~~~~~----m~~~g~~p~~~~~~~ll~~~~ 189 (533)
+....+++++...|+- +.-+-|.-|..-+.+. +...+..++... ..+.|. |+. .|.-..
T Consensus 298 ~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~-~~e-----AI~hAl 371 (894)
T COG2909 298 ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRELAARLKELHRAAAEWFAEHGL-PSE-----AIDHAL 371 (894)
T ss_pred CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccccCCchhHHHHHHHHHHHhCCC-hHH-----HHHHHH
Confidence 4456777888777642 2334455555444322 122233333322 234442 222 234445
Q ss_pred hcCChHHHHHHHHHHHHc---------------CCCcCHHHHH--H--HHH--HHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 009506 190 RARYGEDTLSVYREMKEK---------------GMQLSVTLYN--T--LLA--MCADVGYTDEAFEIFEDMKSSENCQPD 248 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~---------------g~~~~~~~~~--~--li~--~~~~~g~~~~A~~~~~~m~~~~~~~p~ 248 (533)
+.|+++.|-.++++.... +++ +...++ . ++. ......++++|..++.+....-. .|+
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP-~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~-~~~ 449 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALP-AELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLK-APM 449 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCC-HHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhC-cCc
Confidence 678888777777655111 111 211111 1 122 23456789999999887765422 222
Q ss_pred -------HHHHHHHHH-HHHhcCChHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCC
Q 009506 249 -------SWTFSSMIT-ICSCRGKVSEAEAMFNEMLE----AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGIT 316 (533)
Q Consensus 249 -------~~~~~~li~-~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 316 (533)
...|+.|-. .....|++++|.++-+.... .-..+....+..+..+..-.|++++|..+..+..+..-.
T Consensus 450 ~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 450 HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 224444432 23457888999888877654 234456677788888888899999999988877655333
Q ss_pred CCHHHHHHHHH-----HHhcCCh---HHHHHHHHHHHh----cCCChhH---HHHHHHHhhhhhccHHHHHHHHHhhhcc
Q 009506 317 PDDRFCGCLLN-----VMTQTPK---EELGKLVECVEK----SNSKLGY---VVKLLLEEQDIEGDFKKEATELFNSISK 381 (533)
Q Consensus 317 p~~~~~~~ll~-----~~~~~~~---~~a~~~~~~~~~----~~~~~~~---~~~~l~~~~~~~g~~~~~a~~~~~~~~~ 381 (533)
-|...+..+.. .+...|. .+..+.+..+.. ..+.... ....+..++.+......++..-+.-...
T Consensus 530 ~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~ 609 (894)
T COG2909 530 HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSV 609 (894)
T ss_pred cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhh
Confidence 34443332222 2334453 334443433322 2222111 1133334443322111222222211111
Q ss_pred -Cccc--h--hhHHHHHHHHhcCCHHHHHHHHHHHHhccccCC
Q 009506 382 -DVKK--A--YCNCLIDLCVNLNLLENACKLLELGLTLEVYTD 419 (533)
Q Consensus 382 -~~~~--~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~ 419 (533)
.+.. . .+..|+..+...|++++|...++++......++
T Consensus 610 ~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 610 YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 1111 1 234678888999999999999999876665554
No 429
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.15 E-value=1.8e+02 Score=26.94 Aligned_cols=53 Identities=17% Similarity=0.036 Sum_probs=24.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009506 149 LLDTMGRAKRPWQVKTIYKEMTD----NG-LSPNWNTYASLLRAYGRARYGEDTLSVY 201 (533)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 201 (533)
|-.-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+-
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 33445555666666666555531 12 1223334444444455555555444443
No 430
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.69 E-value=4.6e+02 Score=25.87 Aligned_cols=39 Identities=13% Similarity=0.285 Sum_probs=20.9
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009506 95 YDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 135 (533)
Q Consensus 95 l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 135 (533)
+.....+.|...+......++... .|+...+...++.+.
T Consensus 176 l~~~~~~~g~~i~~~al~~l~~~~--~gdlr~~~~~lekl~ 214 (367)
T PRK14970 176 LAGIAVKEGIKFEDDALHIIAQKA--DGALRDALSIFDRVV 214 (367)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 333444556655555555555432 356666666666554
No 431
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=34.28 E-value=6.9e+02 Score=27.75 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=39.8
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-------------CCCHHHHHHHHHHHHhcCChhHHHHH
Q 009506 99 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGV-------------KPNMITYNNLLDTMGRAKRPWQVKTI 165 (533)
Q Consensus 99 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------------~pd~~~~~~li~~~~~~g~~~~a~~~ 165 (533)
..+.|+..+......+++.. .|++.+|+.++++....+- ..|...+..++.++. .++..+++.+
T Consensus 191 l~~EgI~id~eAL~lIA~~A--~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL~-~~d~~~~l~~ 267 (830)
T PRK07003 191 LGEERIAFEPQALRLLARAA--QGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDALA-AGDGPEILAV 267 (830)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHH
Confidence 33467777776666555543 6888888888777553220 112222333333332 3555566666
Q ss_pred HHHHHHCCC
Q 009506 166 YKEMTDNGL 174 (533)
Q Consensus 166 ~~~m~~~g~ 174 (533)
++++...|+
T Consensus 268 ~~~l~~~g~ 276 (830)
T PRK07003 268 ADEMALRSL 276 (830)
T ss_pred HHHHHHhCC
Confidence 666655554
No 432
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=34.06 E-value=4.5e+02 Score=25.51 Aligned_cols=97 Identities=12% Similarity=0.034 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHcC------------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 009506 106 IDPNAFSTLIKLYGTAG------------NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG 173 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g------------~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 173 (533)
-|+.+|-.+|..--+.- -.+.-+.++++..+.. +-+...+-.+|..+.+..+.++..+.++++....
T Consensus 17 ~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~ 95 (321)
T PF08424_consen 17 HDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN 95 (321)
T ss_pred ccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 35667766665443321 2455667777776652 3456667777788888888888888888888753
Q ss_pred CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHH
Q 009506 174 LSPNWNTYASLLRAYGR---ARYGEDTLSVYREM 204 (533)
Q Consensus 174 ~~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~m 204 (533)
+-+...|...|+.... .-.++....+|.+.
T Consensus 96 -~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~ 128 (321)
T PF08424_consen 96 -PGSPELWREYLDFRQSNFASFTVSDVRDVYEKC 128 (321)
T ss_pred -CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 2356667666665543 22345555555543
No 433
>PRK09462 fur ferric uptake regulator; Provisional
Probab=34.05 E-value=2e+02 Score=24.08 Aligned_cols=59 Identities=8% Similarity=0.226 Sum_probs=28.3
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009506 99 ARNEKWRIDPNAFSTLIKLYGTA-GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 158 (533)
Q Consensus 99 ~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 158 (533)
+...|++++..=.. ++..+... +..-.|.++++.+.+.+...+..|-.-.|..+...|-
T Consensus 8 l~~~glr~T~qR~~-Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 8 LKKAGLKVTLPRLK-ILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHcCCCCCHHHHH-HHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 44455555544322 33333332 3455566666666655544455554444455554443
No 434
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.85 E-value=3.4e+02 Score=24.10 Aligned_cols=54 Identities=11% Similarity=-0.002 Sum_probs=22.9
Q ss_pred HhcCChHHHHHHHHHHHHc--CCCcCHHHHHHHHH-HHHhcC--CHHHHHHHHHHHHhC
Q 009506 189 GRARYGEDTLSVYREMKEK--GMQLSVTLYNTLLA-MCADVG--YTDEAFEIFEDMKSS 242 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~-~~~~~g--~~~~A~~~~~~m~~~ 242 (533)
...|++++|.+-++++.+. .++--...|..+.. +++..+ .+-+|.-++..+...
T Consensus 40 ~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 40 LHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 3445566655555544331 00111223333333 344443 344555555555443
No 435
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.68 E-value=2e+02 Score=26.60 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=32.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 254 SMITICSCRGKVSEAEAMFNEMLE----AG-FEPNLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
.+..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.++.+.+--+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455667777777777777776632 12 1223444555566666666666666554443
No 436
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=32.61 E-value=3e+02 Score=28.95 Aligned_cols=162 Identities=10% Similarity=-0.072 Sum_probs=106.9
Q ss_pred HhhHHHHHhhcCCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCChhHHHHHH
Q 009506 92 EKSYDTRARNEKWRIDPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPNMITYNNL---LDTMGRAKRPWQVKTIY 166 (533)
Q Consensus 92 ~~~l~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~pd~~~~~~l---i~~~~~~g~~~~a~~~~ 166 (533)
.+.+--+|-.....|+..+..+++.-.... ..-+-+-.+|..|.. |+...|-+| .-.+-..|+...|...+
T Consensus 555 ~~~l~~r~d~k~~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~----~~~p~w~~ln~aglywr~~gn~~~a~~cl 630 (886)
T KOG4507|consen 555 VKELEVRMDLKAKMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK----PNAPIWLILNEAGLYWRAVGNSTFAIACL 630 (886)
T ss_pred HHHhhhcccccccCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC----CCCCeEEEeecccceeeecCCcHHHHHHH
Confidence 344444566666677888777776665543 234456667777754 444444333 22234578888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 009506 167 KEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQ 246 (533)
Q Consensus 167 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 246 (533)
.......-.-.-+....|.+...+.|...+|..++.+...... ....++-.+.++|....+++.|++.|++..+.. .
T Consensus 631 ~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~--~ 707 (886)
T KOG4507|consen 631 QRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-SEPLTFLSLGNAYLALKNISGALEAFRQALKLT--T 707 (886)
T ss_pred HHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-cCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC--C
Confidence 7776432112223455566677777888889888887776653 356778888999999999999999999888764 4
Q ss_pred CCHHHHHHHHHHHH
Q 009506 247 PDSWTFSSMITICS 260 (533)
Q Consensus 247 p~~~~~~~li~~~~ 260 (533)
.+.+.-+.|...-|
T Consensus 708 ~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 708 KCPECENSLKLIRC 721 (886)
T ss_pred CChhhHHHHHHHHH
Confidence 56666666665555
No 437
>PLN03025 replication factor C subunit; Provisional
Probab=32.45 E-value=4.7e+02 Score=25.26 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=24.3
Q ss_pred hhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 009506 93 KSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEE 133 (533)
Q Consensus 93 ~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 133 (533)
..+.....+.|+..+......++... .|+...|+..++.
T Consensus 165 ~~L~~i~~~egi~i~~~~l~~i~~~~--~gDlR~aln~Lq~ 203 (319)
T PLN03025 165 GRLMKVVEAEKVPYVPEGLEAIIFTA--DGDMRQALNNLQA 203 (319)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHH
Confidence 33444455567777777776666543 4777777777763
No 438
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.28 E-value=3.9e+02 Score=24.36 Aligned_cols=22 Identities=14% Similarity=0.141 Sum_probs=12.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 009506 219 LLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~m~ 240 (533)
++.++...|+.+.|+.+++.+.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~ 135 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG 135 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC
Confidence 4555555566666666655543
No 439
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=32.25 E-value=4.8e+02 Score=25.30 Aligned_cols=116 Identities=17% Similarity=0.192 Sum_probs=56.1
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHH
Q 009506 197 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC---RGKVSEAEAMFN 273 (533)
Q Consensus 197 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~ 273 (533)
-+.++++..+.+. -+...+-.+|..+.+..+.++..+.++++.... +-+...|...|+.... .-.++....+|.
T Consensus 50 klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 50 KLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3445555444432 245555555666666666666666666665543 2344555554444333 123444444444
Q ss_pred HHHH------cCC------CCC-----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 009506 274 EMLE------AGF------EPN-----LFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 315 (533)
Q Consensus 274 ~m~~------~g~------~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 315 (533)
+... .+. .++ ...+..+..-+.++|..+.|..+|+-+.+.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 3221 110 000 11122223334566777777777777776654
No 440
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.16 E-value=4e+02 Score=24.34 Aligned_cols=63 Identities=10% Similarity=0.148 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHHhcCChhHHHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKP---NMITYN--NLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~~~~--~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
++..-+|.||--|.-...+.+|.+.|. .+.|+.| |..+++ .-|......|+.++|++..+++.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa--~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFA--KESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhc--cccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhC
Confidence 333444555555544444555555553 2333333 222222 23344455555555555555443
No 441
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=31.74 E-value=2.5e+02 Score=21.96 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=4.9
Q ss_pred hcCCHHHHHHHH
Q 009506 225 DVGYTDEAFEIF 236 (533)
Q Consensus 225 ~~g~~~~A~~~~ 236 (533)
..|++++|..+.
T Consensus 51 NrG~Yq~Al~l~ 62 (115)
T TIGR02508 51 NRGDYQSALQLG 62 (115)
T ss_pred ccchHHHHHHhc
Confidence 334444444433
No 442
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.37 E-value=1.2e+03 Score=29.57 Aligned_cols=122 Identities=11% Similarity=0.054 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
...|-.+...|+.-+++|...-+...-. .+...+ .-|......|++..|...|+++.+.+ ++...+++-+++.
T Consensus 1420 e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~-~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~s 1492 (2382)
T KOG0890|consen 1420 EALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLY-QQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKS 1492 (2382)
T ss_pred HHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHH-HHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHh
Confidence 3345555568888888888877776421 122223 34445667899999999999999875 3336778777776
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH-HHHHHhcCCHHHHHHHHH
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTL-LAMCADVGYTDEAFEIFE 237 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 237 (533)
....|.+..+.-..+-.... ..+....++.+ +.+--+.++++...+.+.
T Consensus 1493 ml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1493 MLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred hhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 66677777776655544433 22233344433 333456677777666654
No 443
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=31.02 E-value=1.6e+02 Score=23.10 Aligned_cols=21 Identities=24% Similarity=0.350 Sum_probs=9.8
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 009506 255 MITICSCRGKVSEAEAMFNEM 275 (533)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m 275 (533)
++..|...|+.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444445555555555443
No 444
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.33 E-value=1.1e+02 Score=21.53 Aligned_cols=52 Identities=10% Similarity=0.122 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 104 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 156 (533)
Q Consensus 104 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 156 (533)
+.|+...++.++..+++..-.++++..+.+...+|. -+..+|---++.+++.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE 55 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 356677899999999999999999999999999885 5777887777777653
No 445
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.98 E-value=5.1e+02 Score=24.94 Aligned_cols=87 Identities=9% Similarity=0.252 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----------cCChHH
Q 009506 198 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC----------RGKVSE 267 (533)
Q Consensus 198 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----------~g~~~~ 267 (533)
.++++.|.+.++.|.-..+.-+.-.+.+.=.+.+.+.+++.+.... .. |..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~----~r--fd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP----QR--FDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh----hh--hHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 5667777777777777776666666666667777777777776532 11 4444444433 577777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 009506 268 AEAMFNEMLEAGFEPNLFVLTSLIQCY 294 (533)
Q Consensus 268 A~~~~~~m~~~g~~p~~~~~~~li~~~ 294 (533)
..++++.-. ..|......+.+.+
T Consensus 337 nmkLLQ~yp----~tdi~~~l~~A~~L 359 (370)
T KOG4567|consen 337 NMKLLQNYP----TTDISKMLAVADSL 359 (370)
T ss_pred HHHHHhcCC----CCCHHHHHHHHHHH
Confidence 776665432 24544444444443
No 446
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=29.76 E-value=1.1e+02 Score=17.01 Aligned_cols=28 Identities=11% Similarity=0.161 Sum_probs=13.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 122 GNFDGCLNVYEEMKAIGVKPNMITYNNLL 150 (533)
Q Consensus 122 g~~~~A~~~~~~m~~~g~~pd~~~~~~li 150 (533)
|+.+.|..+|+++.... +-+...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 34556666666665432 23444444433
No 447
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=29.64 E-value=5.7e+02 Score=26.74 Aligned_cols=37 Identities=8% Similarity=0.146 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 009506 176 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV 213 (533)
Q Consensus 176 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 213 (533)
.+....-.|+++..+ |+.+.|+.+++++...|..|..
T Consensus 256 ~~~~~if~L~~ai~~-~d~~~Al~~l~~L~~~g~~~~~ 292 (507)
T PRK06645 256 VDSSVIIEFVEYIIH-RETEKAINLINKLYGSSVNLEI 292 (507)
T ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHH
Confidence 344444455555544 8888899999999888876543
No 448
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=29.55 E-value=8.3e+02 Score=27.27 Aligned_cols=220 Identities=14% Similarity=0.087 Sum_probs=121.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCcC-------HHHHHHHHHH-HHhcCCHHHHHHHHHHHHhC---CCCCCCHHHHHHHHHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLS-------VTLYNTLLAM-CADVGYTDEAFEIFEDMKSS---ENCQPDSWTFSSMITI 258 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~---~~~~p~~~~~~~li~~ 258 (533)
-..++++|..++.++...-..|+ ...|+.+-.. ....|++++|+++-+..... +...+..+.+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 46889999999888765422222 2244444332 33468889988888765542 1123467778888899
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHHH---HHHHH--HHHhcCChh--HHHHHHHHhhhC-----CC-CCCHHHHHHH
Q 009506 259 CSCRGKVSEAEAMFNEMLEAGFEPNLFVL---TSLIQ--CYGKAQRTD--DVVRALNRLPEL-----GI-TPDDRFCGCL 325 (533)
Q Consensus 259 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~li~--~~~~~g~~~--~a~~~~~~m~~~-----g~-~p~~~~~~~l 325 (533)
..-.|++++|..+..+..+..-.-++..+ ..+.. .+...|+.. +....|...... .. .+-..+...+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 99999999999998876653222343333 33322 244556332 223333333221 11 1233466667
Q ss_pred HHHHhcCCh--HHHHHHHHHHHhcCC--ChhHHH-HHHHHhhhhhccHHHHHHHHHhhhcc---Cc-cchhhHHHH---H
Q 009506 326 LNVMTQTPK--EELGKLVECVEKSNS--KLGYVV-KLLLEEQDIEGDFKKEATELFNSISK---DV-KKAYCNCLI---D 393 (533)
Q Consensus 326 l~~~~~~~~--~~a~~~~~~~~~~~~--~~~~~~-~~l~~~~~~~g~~~~~a~~~~~~~~~---~~-~~~~~~~li---~ 393 (533)
+.++.+... .++..-++.-....+ ...+.. .+|+..+...|+. ++|...++.+.. .+ -.+.|.+.+ .
T Consensus 587 l~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl-~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 587 LRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDL-DKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 777766333 333333333222222 222222 4778888888987 899888877653 12 122332222 2
Q ss_pred H--HHhcCCHHHHHHHHHH
Q 009506 394 L--CVNLNLLENACKLLEL 410 (533)
Q Consensus 394 ~--~~~~g~~~~A~~l~~~ 410 (533)
. -...|+.++|.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2356888877766654
No 449
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=29.48 E-value=1.7e+02 Score=20.33 Aligned_cols=14 Identities=14% Similarity=0.330 Sum_probs=6.1
Q ss_pred cCChhHHHHHHHHH
Q 009506 156 AKRPWQVKTIYKEM 169 (533)
Q Consensus 156 ~g~~~~a~~~~~~m 169 (533)
.|++-+|.++++.+
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 44444444444444
No 450
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.46 E-value=5.8e+02 Score=26.65 Aligned_cols=34 Identities=12% Similarity=0.104 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 212 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 212 (533)
......+++++ ..++.++|..+++++...|..|.
T Consensus 242 ~~~if~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 242 QERLRGIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 34444555555 44778888888888888875543
No 451
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=29.44 E-value=2.5e+02 Score=21.24 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=30.3
Q ss_pred HhcCChHHHHHHHHHHHH----cCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 260 SCRGKVSEAEAMFNEMLE----AGFEPN----LFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 260 ~~~g~~~~A~~~~~~m~~----~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
.+.|++..|.+-+.+..+ .+.... ......+.......|+.++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456777777555544433 222111 12222344456677999999998888754
No 452
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=29.20 E-value=2.2e+02 Score=22.62 Aligned_cols=25 Identities=16% Similarity=0.222 Sum_probs=15.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIG 138 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g 138 (533)
+|+.+.+|...++|+++.+.|.++|
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 4555566666666666666666655
No 453
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=28.88 E-value=81 Score=18.72 Aligned_cols=23 Identities=22% Similarity=0.550 Sum_probs=12.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHH
Q 009506 123 NFDGCLNVYEEMKAIGVKPNMITYN 147 (533)
Q Consensus 123 ~~~~A~~~~~~m~~~g~~pd~~~~~ 147 (533)
.++.|..+|++.... .|++.+|-
T Consensus 2 E~dRAR~IyeR~v~~--hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLV--HPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHh--CCCchHHH
Confidence 355666666666553 35555553
No 454
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=28.30 E-value=4.8e+02 Score=24.10 Aligned_cols=49 Identities=24% Similarity=0.504 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 009506 281 EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 331 (533)
Q Consensus 281 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 331 (533)
.|.+.....++..| ..+++++|.+++.++-+.|..|.... +.+.+.+-.
T Consensus 236 ~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~K~ 284 (333)
T KOG0991|consen 236 EPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDII-TTLFRVVKN 284 (333)
T ss_pred CCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHHHh
Confidence 36677777777765 45678888888888888888876553 334444443
No 455
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.25 E-value=1.5e+02 Score=23.44 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=16.8
Q ss_pred CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 227 (533)
+..-.|.++++.+.+.+...+..|....|+.+.+.|
T Consensus 14 ~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 14 DGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 333445555555555544444444444444444444
No 456
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=28.08 E-value=6.7e+02 Score=25.68 Aligned_cols=300 Identities=12% Similarity=0.125 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHC--CCCC--------
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT--MGRAKRPWQVKTIYKEMTDN--GLSP-------- 176 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~--g~~p-------- 176 (533)
+.-+.+|++|... +.+.....+.++.+. .| ...|-.|..+ +.+.+.+.+|++.+..-.++ +..|
T Consensus 47 vl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~ 122 (549)
T PF07079_consen 47 VLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQ 122 (549)
T ss_pred HHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHH
Confidence 3345677777643 455555555555542 23 2234444443 34678888888887666543 3222
Q ss_pred ----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCcCHHHHHHHHHHHHhcCC---------------HHHHH
Q 009506 177 ----NWNTYASLLRAYGRARYGEDTLSVYREMKEKG----MQLSVTLYNTLLAMCADVGY---------------TDEAF 233 (533)
Q Consensus 177 ----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~~~~li~~~~~~g~---------------~~~A~ 233 (533)
|-..=+..+.++...|++.++..++++|...= ..-+..+||.++-++.+.-- ++.+.
T Consensus 123 ~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemil 202 (549)
T PF07079_consen 123 QLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMIL 202 (549)
T ss_pred HHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHH
Confidence 22223566778888999999988888877643 33678888886666554311 12222
Q ss_pred HHHHHHHhCCC-----CCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHH
Q 009506 234 EIFEDMKSSEN-----CQPDSWTFSSMITICSCR--GKVSEAEAMFNEMLEAGFEPNL-FVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 234 ~~~~~m~~~~~-----~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~ 305 (533)
-...+|..... +.|....+..++....-. .+..--.+++......-+.|+. -....|+..+.+ +.+++..
T Consensus 203 fY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~ 280 (549)
T PF07079_consen 203 FYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGH 280 (549)
T ss_pred HHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHH
Confidence 22233322110 123333333333333221 1222223333333333344553 234455555544 5555555
Q ss_pred HHHHhhhCCCCC----CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHH------HHHHHhhhhhccH---HHH
Q 009506 306 ALNRLPELGITP----DDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV------KLLLEEQDIEGDF---KKE 371 (533)
Q Consensus 306 ~~~~m~~~g~~p----~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~---~~~ 371 (533)
+-+.+....+.+ -..+|..++....+.+. ..|.+.+..+.-.+|.....- ..+....+..... ..+
T Consensus 281 ~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~ 360 (549)
T PF07079_consen 281 FCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRD 360 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHH
Confidence 555544432221 12367778888888888 788777777766666654211 1222222211100 122
Q ss_pred HHHHHhhhcc-Cccch-hhHHHH---HHHHhcCC-HHHHHHHHHHHHhc
Q 009506 372 ATELFNSISK-DVKKA-YCNCLI---DLCVNLNL-LENACKLLELGLTL 414 (533)
Q Consensus 372 a~~~~~~~~~-~~~~~-~~~~li---~~~~~~g~-~~~A~~l~~~m~~~ 414 (533)
-+.++..+.. +.|.. ....|+ .-+++.|. -++|+++++..++.
T Consensus 361 yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 361 YLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 2334444432 11221 223333 34788887 77889999887654
No 457
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.98 E-value=7.2e+02 Score=26.03 Aligned_cols=36 Identities=14% Similarity=0.301 Sum_probs=23.2
Q ss_pred HHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 204 MKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 204 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
+.+.|+..+......++... .|+...|..++++...
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia 226 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIA 226 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHh
Confidence 34557766666665555443 5788888888876554
No 458
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.37 E-value=5.3e+02 Score=24.28 Aligned_cols=192 Identities=11% Similarity=0.139 Sum_probs=107.6
Q ss_pred CCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHc---CC-
Q 009506 138 GVKPNMITYNNLLDTM-GRAKRPWQVKTIYKEMTDNGLSPNWN---TYASLLRAYGRARYGEDTLSVYREMKEK---GM- 209 (533)
Q Consensus 138 g~~pd~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~---g~- 209 (533)
+-+||+..=|..-++- .+...+++|+.-|++.++..-.--.. ..--+|..+.+.+++++....|.+|..- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 4567776555433322 23457788888888888643222222 3344677788888888888888877531 11
Q ss_pred -CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----
Q 009506 210 -QLSVTLYNTLLAMCADVGYTDEAFEIFEDMK----SSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF---- 280 (533)
Q Consensus 210 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---- 280 (533)
.-+....|++++-.....+.+-..++++.-. ....-..--.|-+-|...|...|++.+..++++++...--
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 1134566777776666666666666654422 2110011122334667777777888888888877765211
Q ss_pred CCC-------HHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHh
Q 009506 281 EPN-------LFVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITPDDRFCGCLLNVMT 330 (533)
Q Consensus 281 ~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~ 330 (533)
.-| ...|..=|+.|....+-.....+|++.... ..-|.+.... +|+-|.
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECG 237 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECG 237 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcC
Confidence 111 234556666676666666666666665332 2234444333 444444
No 459
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=27.21 E-value=59 Score=22.81 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=17.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCH
Q 009506 226 VGYTDEAFEIFEDMKSSENCQPDS 249 (533)
Q Consensus 226 ~g~~~~A~~~~~~m~~~~~~~p~~ 249 (533)
.-+++.|...|.++...|.++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 347888888888888777655554
No 460
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=26.60 E-value=3.4e+02 Score=26.11 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=40.6
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 009506 233 FEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG 295 (533)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 295 (533)
.++++.+++.++ .|.-..|..+.-.+.+.=.+.++..+|+.+.. |..-|..|+..||
T Consensus 263 ~EL~~~L~~~~i-~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEI-HPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCC-CccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 456677776665 78877777777777777788888888888764 3334666666665
No 461
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=26.46 E-value=1.5e+02 Score=27.24 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=12.7
Q ss_pred HHhcCCHHHHHHHHHHHHhccc
Q 009506 395 CVNLNLLENACKLLELGLTLEV 416 (533)
Q Consensus 395 ~~~~g~~~~A~~l~~~m~~~g~ 416 (533)
|--.|+.++|+++-+......+
T Consensus 179 yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 179 YEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHH
Confidence 3446777777777776554443
No 462
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=25.66 E-value=3e+02 Score=20.80 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=25.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 164 TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 164 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 206 (533)
++|+-....|+..|..+|.++++...-+=..+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666666666666666666666665555555555555555543
No 463
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=25.57 E-value=7.1e+02 Score=25.18 Aligned_cols=205 Identities=8% Similarity=-0.055 Sum_probs=105.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 194 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 194 (533)
|+++...| ..+...+-...... ++...+-....++....+...+..+.+.+. .++..+-..+.+++.+.+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L~----d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVLQ----AGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHhc----CCCHHHHHHHHHHHhcCCch
Confidence 77777777 56777666655322 333444444444433333222333333332 35666777888888877776
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (533)
+....+...+... +.......+.++...+. .+.+.+....+ .+|...-...+.++...+..+..-. +..
T Consensus 117 ~a~~~L~~~L~~~----~p~vR~aal~al~~r~~--~~~~~L~~~L~----d~d~~Vra~A~raLG~l~~~~a~~~-L~~ 185 (410)
T TIGR02270 117 QAEPWLEPLLAAS----EPPGRAIGLAALGAHRH--DPGPALEAALT----HEDALVRAAALRALGELPRRLSEST-LRL 185 (410)
T ss_pred HHHHHHHHHhcCC----ChHHHHHHHHHHHhhcc--ChHHHHHHHhc----CCCHHHHHHHHHHHHhhccccchHH-HHH
Confidence 6555444444222 44455555566665442 23333333332 4566666667777777666433333 334
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVE 345 (533)
Q Consensus 275 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~a~~~~~~~~ 345 (533)
+.. .+|..+-..-+.+....|. .+|...+..+... ++......+...+...|..++...+..+.
T Consensus 186 al~---d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~---~g~~~~~~l~~~lal~~~~~a~~~L~~ll 249 (410)
T TIGR02270 186 YLR---DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVL---EGGPHRQRLLVLLAVAGGPDAQAWLRELL 249 (410)
T ss_pred HHc---CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhc---cCccHHHHHHHHHHhCCchhHHHHHHHHh
Confidence 333 2666666677777777777 5666555553221 22223333333333334444444444443
No 464
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=25.27 E-value=6.7e+02 Score=26.29 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMK 135 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~ 135 (533)
...|+.-|.+.+++++|..++..|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 3457788889999999999888874
No 465
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=25.17 E-value=6.6e+02 Score=24.61 Aligned_cols=87 Identities=22% Similarity=0.397 Sum_probs=43.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH-HHHHhhhCCCCCCHHHHHHHHHHHhcC
Q 009506 254 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR-ALNRLPELGITPDDRFCGCLLNVMTQT 332 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~ 332 (533)
-+.+.+++.++-+.+..+-+.+... |.. ...+|..++-...-.+...+ +++.+... ||......++++++..
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~l---P~~-vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~ 243 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHL---PPE-VLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSA 243 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhC---ChH-HHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCC
Confidence 4456666666666555555444331 333 33445555444443333333 33333332 6777777777777776
Q ss_pred Ch-HHHHHHHHHHHhc
Q 009506 333 PK-EELGKLVECVEKS 347 (533)
Q Consensus 333 ~~-~~a~~~~~~~~~~ 347 (533)
.. ......++.+...
T Consensus 244 ~~~~~~~~~i~~~L~~ 259 (340)
T PF12069_consen 244 PASDLVAILIDALLQS 259 (340)
T ss_pred CchhHHHHHHHHHhcC
Confidence 66 2333324444443
No 466
>PF06485 DUF1092: Protein of unknown function (DUF1092); InterPro: IPR009472 This family consists of several hypothetical proteins of unknown function all from photosynthetic organisms including plants and cyanobacteria.
Probab=25.07 E-value=2.3e+02 Score=26.56 Aligned_cols=60 Identities=28% Similarity=0.517 Sum_probs=43.9
Q ss_pred HHHH-HHHHHHHHcCCCCCCceEEEeeeccccccchhHHHHHHHHhhhcCCCCCCCCCCcceEEEeHHHHHHHhhcCC
Q 009506 445 HIWI-NDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRS 521 (533)
Q Consensus 445 ~~~~-~~l~~~~~~g~~~p~~~~i~~~~~~~~~~~~~l~~~~~~~L~~~~~~f~~~~~~~g~~~~~~~~l~~wl~~~~ 521 (533)
..|+ ..+++++..+...|+.+-+- ...+..+|.....+++-+...+. ...+|+.||++|.
T Consensus 43 S~wL~~al~~a~~~~~~~P~~Ir~F---------R~qm~~mI~~A~~~lgI~~~pSR--------Rt~aL~~wL~eR~ 103 (270)
T PF06485_consen 43 SIWLRQALEEAIDQGGEKPDRIRFF---------RSQMLNMITKACEELGIPVEPSR--------RTYALKQWLEERE 103 (270)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEE---------hHHHHHHHHHHHHHCCCceeecc--------cHHHHHHHHHHHH
Confidence 3444 56677777788999776554 34788899999999997666541 2468999999985
No 467
>PRK04946 hypothetical protein; Provisional
Probab=24.60 E-value=4.2e+02 Score=23.25 Aligned_cols=63 Identities=24% Similarity=0.218 Sum_probs=41.2
Q ss_pred eeecccccChhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeeccccccchhHHHHHHHHhhhcC--CCCCCCCC
Q 009506 428 WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELN--APFHDSPD 501 (533)
Q Consensus 428 ~~~~l~~~~~g~~~~a~~~~~~~l~~~~~~g~~~p~~~~i~~~~~~~~~~~~~l~~~~~~~L~~~~--~~f~~~~~ 501 (533)
..++++++....+..++..|+.. +...| .. .+.|+.|.|. .-|+..+...|.+.. .-|..++.
T Consensus 96 ~~LDLhG~~~eeA~~~L~~fl~~---a~~~g--~r-~v~IIHGkG~-----gvLk~~V~~wL~q~~~V~af~~A~~ 160 (181)
T PRK04946 96 LFLDLHGLTQLQAKQELGALIAA---CRKEH--VF-CACVMHGHGK-----HILKQQTPLWLAQHPDVMAFHQAPK 160 (181)
T ss_pred eEEECCCCCHHHHHHHHHHHHHH---HHHcC--CC-EEEEEcCCCH-----hHHHHHHHHHHcCCchhheeeccCc
Confidence 46799999999999988877544 44444 22 3567766654 356778888887644 33555543
No 468
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.47 E-value=1e+03 Score=26.75 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKA 136 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 136 (533)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 489999999999999999999999876
No 469
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=23.98 E-value=8.7e+02 Score=27.30 Aligned_cols=108 Identities=17% Similarity=0.262 Sum_probs=0.0
Q ss_pred hhhHHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 88 SKLKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYK 167 (533)
Q Consensus 88 ~~~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~ 167 (533)
.......|.....+.|+..+...+..++.... |+...++.+++++. .+...+..++..+...+...
T Consensus 181 ~~~l~~~L~~il~~EGv~id~eal~lLa~~sg--GdlR~Al~eLEKLi-a~~~~~~IT~e~V~allg~~----------- 246 (824)
T PRK07764 181 PEVMRGYLERICAQEGVPVEPGVLPLVIRAGG--GSVRDSLSVLDQLL-AGAGPEGVTYERAVALLGVT----------- 246 (824)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHH-hhcCCCCCCHHHHHHHhcCC-----------
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 009506 168 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219 (533)
Q Consensus 168 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 219 (533)
+......++++.. .++...++.+++++.+.|..+.......+
T Consensus 247 ---------~~~~I~~lidAL~-~~D~a~al~~l~~Li~~G~dp~~~L~~LL 288 (824)
T PRK07764 247 ---------DSALIDEAVDALA-AGDGAALFGTVDRVIEAGHDPRRFAEDLL 288 (824)
T ss_pred ---------CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCHHHHHHHHH
No 470
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=23.81 E-value=7e+02 Score=24.47 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN----LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL 326 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 326 (533)
|+.--+...-..--.+++..++..+... .|+ ..-|..+.......|.+++++.+|++.+..|..|-...-..++
T Consensus 105 tlsECl~Li~eGcp~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~ 182 (353)
T PF15297_consen 105 TLSECLNLIEEGCPKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLV 182 (353)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHH
Q ss_pred HHH
Q 009506 327 NVM 329 (533)
Q Consensus 327 ~~~ 329 (533)
..+
T Consensus 183 diL 185 (353)
T PF15297_consen 183 DIL 185 (353)
T ss_pred HHH
No 471
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.39 E-value=2.2e+02 Score=22.40 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=21.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009506 150 LDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 193 (533)
Q Consensus 150 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 193 (533)
+..+...+..-.|.++++.+.+.+...+..|.--.|+.+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33333444444555555555555544444444444444444443
No 472
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=23.29 E-value=9.1e+02 Score=25.60 Aligned_cols=157 Identities=13% Similarity=0.153 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 220 (533)
+....|+.|+..+. .=+.+.-.++++++.. - + ...+..++++...+|-.....-+.+.+....+. +...-..+.
T Consensus 308 ~~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~-~~ea~~~~~ 381 (574)
T smart00638 308 PAAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT-PLEAAQLLA 381 (574)
T ss_pred chHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC-HHHHHHHHH
Confidence 34556777777654 4456777888888764 1 1 678899999999999988777777777766554 333333333
Q ss_pred HHHH--hcCCHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCC-CCCH
Q 009506 221 AMCA--DVGYTDEAFEIFEDMKSSENCQPDS-------WTFSSMITICSCRGKV------SEAEAMFNEMLEAGF-EPNL 284 (533)
Q Consensus 221 ~~~~--~~g~~~~A~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~-~p~~ 284 (533)
.... +.-..+-...+++.+..... .+.. .+|.+++.-+|....- ++..+.+.+...... .-|.
T Consensus 382 ~~~~~~~~Pt~~~l~~l~~l~~~~~~-~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 460 (574)
T smart00638 382 VLPHTARYPTEEILKALFELAESPEV-QKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDE 460 (574)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcCccc-cccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCc
Confidence 3322 23344444444444443332 4443 4455666655544431 233333333222111 1233
Q ss_pred HHHHHHHHHHHhcCChhHHH
Q 009506 285 FVLTSLIQCYGKAQRTDDVV 304 (533)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~ 304 (533)
.--...|.++++.|....+.
T Consensus 461 ~~~~~~LkaLGN~g~~~~i~ 480 (574)
T smart00638 461 EEIQLYLKALGNAGHPSSIK 480 (574)
T ss_pred hheeeHHHhhhccCChhHHH
Confidence 33455677777777754443
No 473
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=23.25 E-value=1.5e+02 Score=23.64 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=16.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 225 (533)
+......+..-.|.++++.|.+.|...+..|.---|+.+.+
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e 54 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEE 54 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHH
Confidence 33333333344455555555554444444433333333333
No 474
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.63 E-value=3.2e+02 Score=21.82 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=16.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC
Q 009506 220 LAMCADVGYTDEAFEIFEDMKSSEN 244 (533)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~m~~~~~ 244 (533)
|+-+.++.-.++|+++++-|.+.|-
T Consensus 68 iD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 4445566666777777777776663
No 475
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.57 E-value=7.2e+02 Score=24.19 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHhhhCCCC
Q 009506 250 WTFSSMITICSCRGKVSEAEAMFNEMLE----AGFEPNLFVLTSLIQC-YGKAQRTDDVVRALNRLPELGIT 316 (533)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~ 316 (533)
..+-....-||+-||.+.|.+.+++..+ .|.+.|++-+..=+.. |....-+.+-++..+.+.+.|..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 3444555566666666666666655432 3555555444333322 22233334444444444455543
No 476
>PRK09857 putative transposase; Provisional
Probab=22.55 E-value=6.8e+02 Score=23.89 Aligned_cols=65 Identities=8% Similarity=0.086 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC
Q 009506 253 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD 318 (533)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 318 (533)
..++....+.++.++..++++.+.+. ........-++.+-+.+.|..+++.++.++|...|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444555555555555555443 222222333444555555555566666666666666544
No 477
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.45 E-value=5.6e+02 Score=22.87 Aligned_cols=127 Identities=16% Similarity=0.168 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH----
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYA--SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT---- 218 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---- 218 (533)
.|..++.+.- .+.. +.....+.+....-...-.++. .+...+..++++++|+.-++.....- .-..+..
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t---~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT---KDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc---hhHHHHHHHHH
Confidence 4445554443 3333 4555556666532111112222 23456778899999999888776541 2222333
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 219 -LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 219 -li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
|.......|.+++|+.+++.....+ -.......-.+.+...|+-++|..-|.+..+.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~---w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEES---WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhcccccc---HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3456777899999999998776532 123334445678899999999999999888764
No 478
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=22.26 E-value=8.6e+02 Score=24.96 Aligned_cols=28 Identities=14% Similarity=0.121 Sum_probs=18.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEKGMQL 211 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 211 (533)
.|+++. ..++.++|..+++.+.+.|..|
T Consensus 253 ~L~~ai-~~~d~~~al~~l~~L~~~g~~~ 280 (451)
T PRK06305 253 TLDEAI-TTQNYAQALEPVTDAMNSGVAP 280 (451)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCcCH
Confidence 445433 4577888888888887777653
No 479
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=22.10 E-value=4.1e+02 Score=21.18 Aligned_cols=17 Identities=12% Similarity=0.127 Sum_probs=8.3
Q ss_pred cchhhHHHHHHHHhcCC
Q 009506 384 KKAYCNCLIDLCVNLNL 400 (533)
Q Consensus 384 ~~~~~~~li~~~~~~g~ 400 (533)
+.....-++..+.+.|-
T Consensus 91 ~~~~~~K~~~~L~rrGF 107 (121)
T PF02631_consen 91 DRKRKQKLIRFLMRRGF 107 (121)
T ss_dssp CHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 33444555555555554
No 480
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.90 E-value=4.2e+02 Score=24.62 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=33.7
Q ss_pred hhHHHHHhhcCCCCCHHHHHHHHHHHHH-----------------cCChHHHHHHHHHHHHCCCCCCHHHHH
Q 009506 93 KSYDTRARNEKWRIDPNAFSTLIKLYGT-----------------AGNFDGCLNVYEEMKAIGVKPNMITYN 147 (533)
Q Consensus 93 ~~l~~~~~~~g~~~~~~~~~~li~~~~~-----------------~g~~~~A~~~~~~m~~~g~~pd~~~~~ 147 (533)
+-+.+++.--|-..|..+-+.+|.-+.- -|..-.++.+|+.|.- ++||+.|++
T Consensus 88 ~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~--ik~~V~Tic 157 (275)
T KOG0840|consen 88 RLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQY--IKPDVSTIC 157 (275)
T ss_pred HHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHh--hCCCceeee
Confidence 4444555666777788877777765432 1456667777777765 567776654
No 481
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=21.82 E-value=1.4e+02 Score=21.91 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=5.4
Q ss_pred HHHHHHHCCCCCC
Q 009506 165 IYKEMTDNGLSPN 177 (533)
Q Consensus 165 ~~~~m~~~g~~p~ 177 (533)
+++.+.+.|..++
T Consensus 41 ~~~~Ll~~g~~~~ 53 (89)
T PF12796_consen 41 IVKLLLENGADIN 53 (89)
T ss_dssp HHHHHHHTTTCTT
T ss_pred HHHHHHHhccccc
Confidence 3334444444443
No 482
>COG5210 GTPase-activating protein [General function prediction only]
Probab=21.54 E-value=9e+02 Score=25.17 Aligned_cols=153 Identities=10% Similarity=0.020 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 009506 159 PWQVKTIYKEMTDNGLSPNWNT-----YASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 232 (533)
Q Consensus 159 ~~~a~~~~~~m~~~g~~p~~~~-----~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 232 (533)
-+.|...+..+.+...-|...+ .......+.. -+ +..-+++..|.+.|+.....++.-++..+.+....+.|
T Consensus 319 Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~--~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~ 396 (496)
T COG5210 319 EEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDD--LVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYA 396 (496)
T ss_pred hHHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHH--HHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHH
Confidence 4567777777776322233222 1111222211 22 23467888999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 233 FEIFEDMKSSENCQPDSWTFSSMITICS----CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (533)
.++++.+--.|. .-....+.+++.... +...-..-..++...... +....+ .-..-...+...+......
T Consensus 397 lriwD~lf~eg~-~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~i~ 470 (496)
T COG5210 397 LRIWDCLFLEGS-SMLFQLALAILKLLRDKLLKLDSDELLDLLLKQLFLH---SGKEAW--SSILKFRHGTDRDILLFIE 470 (496)
T ss_pred HHHHHHHHHhcc-HHHHHHHHHHHHhhhhhhhccCchhHHHHHHHhhhhh---hhhhhh--hhhHHhhhhhhhhHHHHHH
Confidence 999999987663 333333333332221 112222222233222111 111111 2222234455556666666
Q ss_pred HhhhCCCCCCH
Q 009506 309 RLPELGITPDD 319 (533)
Q Consensus 309 ~m~~~g~~p~~ 319 (533)
.+.+.++.|+.
T Consensus 471 ~~~~~~i~p~~ 481 (496)
T COG5210 471 DLLKKDITPTR 481 (496)
T ss_pred hhhhcccCchh
Confidence 66677888876
No 483
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.49 E-value=4e+02 Score=20.80 Aligned_cols=61 Identities=15% Similarity=0.129 Sum_probs=36.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCC
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK--RPWQVKTIYKEMTDNGL 174 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~ 174 (533)
..+|.-|...+++++|.+-+.++.... -.......+|..+...+ .-+.+..++..+.+.+.
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 446778888899999999998875421 12233344555555443 23345566666666553
No 484
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.18 E-value=4e+02 Score=20.72 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh---HHHHHHHHHHHhcCC
Q 009506 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK---EELGKLVECVEKSNS 349 (533)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~a~~~~~~~~~~~~ 349 (533)
...++..|...|+.++|...+.++... .-.......++..+...++ +....++..+...+.
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 345677888889999999999887432 1222345555555555534 556666776665544
No 485
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=21.06 E-value=1.3e+03 Score=26.47 Aligned_cols=30 Identities=10% Similarity=0.284 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHhC
Q 009506 213 VTLYNTLLAMCADVG--YTDEAFEIFEDMKSS 242 (533)
Q Consensus 213 ~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~ 242 (533)
..-...+|.+|++.+ ++++|+.+..++++.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 344567788888888 888888888888764
No 486
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.00 E-value=1.1e+03 Score=25.52 Aligned_cols=35 Identities=17% Similarity=0.424 Sum_probs=20.6
Q ss_pred HhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 009506 99 ARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMK 135 (533)
Q Consensus 99 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 135 (533)
..+.|+..+......++... .|++..|+..++++.
T Consensus 193 a~~egi~i~~~al~~La~~s--~gdlr~al~~Lekl~ 227 (614)
T PRK14971 193 ASKEGITAEPEALNVIAQKA--DGGMRDALSIFDQVV 227 (614)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 34556666665555554433 467777777776653
No 487
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.93 E-value=9.4e+02 Score=24.89 Aligned_cols=106 Identities=18% Similarity=0.213 Sum_probs=50.7
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 009506 97 TRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 176 (533)
Q Consensus 97 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 176 (533)
......|+..+......++... .|+...|+..++.+.... .+.. ..+..+++. |..+
T Consensus 187 ~i~~~egi~i~~eal~~Ia~~s--~GdlR~aln~Le~l~~~~-----------------~~~I--t~e~V~~~l--~~~~ 243 (472)
T PRK14962 187 EVAEAEGIEIDREALSFIAKRA--SGGLRDALTMLEQVWKFS-----------------EGKI--TLETVHEAL--GLIP 243 (472)
T ss_pred HHHHHcCCCCCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhc-----------------CCCC--CHHHHHHHH--cCCC
Confidence 3344556666666666655532 467777777776654310 0110 011111221 1112
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009506 177 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227 (533)
Q Consensus 177 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 227 (533)
+ .....++++. +.++.+.|..++.+|...|..|....-..+..++-..|
T Consensus 244 ~-~~i~~li~si-~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~ 292 (472)
T PRK14962 244 I-EVVRDYINAI-FNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE 292 (472)
T ss_pred H-HHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 2 3333444433 34666777777777766666655544444444433333
No 488
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=20.68 E-value=1.1e+03 Score=25.35 Aligned_cols=258 Identities=11% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHhhHHHHHhhc------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009506 91 KEKSYDTRARNE------KWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT 164 (533)
Q Consensus 91 ~~~~l~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~ 164 (533)
....+...+.+. ....+....-..+--..+.=+.++-.++++++...- .....++.+++++..+|-...+.-
T Consensus 322 ~~~~l~~~l~~~~~~~~~~~~~~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~ 399 (618)
T PF01347_consen 322 NLKELLKELADLLEEPEDPVSKETLSKFSRLVRLLRTLSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKF 399 (618)
T ss_dssp ---HHHHHHHHHHHH-SSS--TTHHHHHHHHHHHHTTS-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHH
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH--------HHHHHHHHHHhc----------
Q 009506 165 IYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVT--------LYNTLLAMCADV---------- 226 (533)
Q Consensus 165 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--------~~~~li~~~~~~---------- 226 (533)
+.+.+....+......--.+.-......=-.+.++.+.+|.+.....+.. ++..|+.-+|..
T Consensus 400 i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~ 479 (618)
T PF01347_consen 400 IKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPC 479 (618)
T ss_dssp HHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeeccccccccccc
Q ss_pred --CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChhH
Q 009506 227 --GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYG--KAQRTDD 302 (533)
Q Consensus 227 --g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~--~~g~~~~ 302 (533)
-..++..+.+........-..|...-...|.++...|.. .+...+..........+...-...|.++. ..-..+.
T Consensus 480 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~ 558 (618)
T PF01347_consen 480 SRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK 558 (618)
T ss_dssp -SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH
T ss_pred chhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCh
Q 009506 303 VVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKL 351 (533)
Q Consensus 303 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~ 351 (533)
+..++-.+-..--.+...=..+++..+.........+-+....+..++.
T Consensus 559 v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~E~~~ 607 (618)
T PF01347_consen 559 VREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLWNEPSN 607 (618)
T ss_dssp HHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHTT-S-H
T ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHhhCchH
No 489
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=20.27 E-value=8e+02 Score=23.83 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=18.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEKGMQL 211 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 211 (533)
.++++.. .|+..+|..+++.+.+.|..|
T Consensus 249 ~l~~ai~-~~~~~~a~~~~~~l~~~~~~~ 276 (355)
T TIGR02397 249 ELLEAIL-NKDTAEALKILDEILESGVDP 276 (355)
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCH
Confidence 3455544 377788888888887776654
No 490
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=20.18 E-value=2.2e+02 Score=22.73 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=22.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 148 NLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 148 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 192 (533)
.++..+...+..-.|.++++.|.+.|...+..|.---|+.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 444555555555556666666666555555544444444444443
No 491
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.09 E-value=4.3e+02 Score=20.61 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=19.6
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHH
Q 009506 324 CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLL 359 (533)
Q Consensus 324 ~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~ 359 (533)
.|--.|++.|+ +.+.+-|+.=+..-|....++..|+
T Consensus 77 hLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLm 113 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLM 113 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHH
Confidence 34444566666 6666666655555555555544443
No 492
>PRK11619 lytic murein transglycosylase; Provisional
Probab=20.02 E-value=1.1e+03 Score=25.49 Aligned_cols=77 Identities=12% Similarity=0.047 Sum_probs=38.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 192 (533)
..+..+.+.+++...++++.. .+.+...-.....+....|+.++|....+.+=..| ......++.+++.+.+.|
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 344444555566555552211 12344444455556666666665655555554444 233455666666666555
Q ss_pred ChH
Q 009506 193 YGE 195 (533)
Q Consensus 193 ~~~ 195 (533)
.+.
T Consensus 178 ~lt 180 (644)
T PRK11619 178 KQD 180 (644)
T ss_pred CCC
Confidence 443
Done!