Query 009506
Match_columns 533
No_of_seqs 633 out of 3080
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 06:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 4E-33 1.4E-37 286.0 25.6 205 92-297 9-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.4E-32 4.8E-37 281.9 25.3 207 125-332 7-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.5E-26 5.2E-31 244.9 33.3 351 90-452 101-544 (597)
4 2xpi_A Anaphase-promoting comp 100.0 1.3E-26 4.5E-31 245.4 30.4 302 106-414 82-470 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2.9E-20 9.9E-25 185.8 37.4 301 105-413 64-367 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 4.9E-20 1.7E-24 184.1 37.4 341 91-447 17-362 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.7E-19 9.3E-24 182.1 35.6 300 106-414 24-358 (450)
8 2y4t_A DNAJ homolog subfamily 99.8 1.7E-17 6E-22 168.7 34.4 291 91-392 44-370 (450)
9 3spa_A Mtrpol, DNA-directed RN 99.8 6.8E-21 2.3E-25 200.8 8.5 170 105-274 124-306 (1134)
10 3ieg_A DNAJ homolog subfamily 99.8 1.6E-16 5.3E-21 155.9 36.4 302 107-415 2-336 (359)
11 2gw1_A Mitochondrial precursor 99.8 6E-17 2.1E-21 167.5 33.1 301 108-415 6-402 (514)
12 2gw1_A Mitochondrial precursor 99.8 7.7E-17 2.6E-21 166.7 31.4 341 91-447 24-472 (514)
13 3spa_A Mtrpol, DNA-directed RN 99.8 1.7E-19 5.7E-24 190.3 10.5 151 177-333 126-286 (1134)
14 3hym_B Cell division cycle pro 99.8 1.8E-16 6.2E-21 153.7 29.6 290 105-401 19-321 (330)
15 1fch_A Peroxisomal targeting s 99.7 4.5E-16 1.5E-20 153.7 24.4 287 118-410 35-355 (368)
16 3hym_B Cell division cycle pro 99.7 1.4E-15 4.9E-20 147.4 27.4 268 140-414 19-299 (330)
17 3fp2_A TPR repeat-containing p 99.7 4.7E-15 1.6E-19 154.3 31.3 301 107-415 24-408 (537)
18 3ieg_A DNAJ homolog subfamily 99.7 3E-14 1E-18 139.5 35.0 296 91-396 21-351 (359)
19 4eqf_A PEX5-related protein; a 99.7 1.9E-15 6.5E-20 149.2 24.8 279 107-410 64-352 (365)
20 4eqf_A PEX5-related protein; a 99.7 1.4E-15 5E-20 150.1 23.0 232 142-379 64-307 (365)
21 3fp2_A TPR repeat-containing p 99.7 6.3E-15 2.2E-19 153.3 29.0 278 92-378 44-403 (537)
22 1b89_A Protein (clathrin heavy 99.7 1.3E-16 4.4E-21 156.6 14.3 275 91-408 21-305 (449)
23 1fch_A Peroxisomal targeting s 99.7 6.3E-15 2.1E-19 145.4 26.7 266 107-378 63-355 (368)
24 3cv0_A Peroxisome targeting si 99.7 1.1E-14 3.6E-19 141.0 27.6 275 109-411 22-312 (327)
25 3cv0_A Peroxisome targeting si 99.7 2.3E-14 7.7E-19 138.7 26.2 270 144-452 22-314 (327)
26 3mkr_A Coatomer subunit epsilo 99.7 2.6E-14 8.7E-19 136.5 25.2 227 112-353 38-270 (291)
27 3mkr_A Coatomer subunit epsilo 99.6 2.3E-13 7.9E-18 129.9 27.3 275 115-408 6-288 (291)
28 3uq3_A Heat shock protein STI1 99.6 4E-13 1.4E-17 125.0 25.8 226 108-348 5-237 (258)
29 2xm6_A Protein corresponding t 99.6 3.7E-11 1.3E-15 123.6 41.6 301 90-415 60-397 (490)
30 1b89_A Protein (clathrin heavy 99.6 3E-15 1E-19 147.0 8.2 248 120-409 15-267 (449)
31 2xm6_A Protein corresponding t 99.6 8E-11 2.7E-15 121.1 41.8 286 107-414 38-360 (490)
32 2ho1_A Type 4 fimbrial biogene 99.6 2.1E-12 7.2E-17 120.0 26.1 202 108-314 37-239 (252)
33 2vq2_A PILW, putative fimbrial 99.6 3.4E-12 1.2E-16 115.9 26.9 203 107-313 7-211 (225)
34 4g1t_A Interferon-induced prot 99.5 4.9E-12 1.7E-16 129.3 29.8 315 93-414 36-401 (472)
35 2pl2_A Hypothetical conserved 99.5 1.3E-12 4.5E-17 118.9 22.5 200 105-311 2-212 (217)
36 1ouv_A Conserved hypothetical 99.5 4.7E-11 1.6E-15 112.5 33.5 226 107-351 5-255 (273)
37 2vq2_A PILW, putative fimbrial 99.5 9.7E-12 3.3E-16 112.9 27.0 210 142-354 7-218 (225)
38 2q7f_A YRRB protein; TPR, prot 99.5 1.7E-12 5.7E-17 119.7 22.0 203 106-314 21-223 (243)
39 2ho1_A Type 4 fimbrial biogene 99.5 1.3E-11 4.4E-16 114.6 27.8 208 143-354 37-245 (252)
40 2pl2_A Hypothetical conserved 99.5 2.7E-12 9.4E-17 116.7 22.4 198 140-344 2-211 (217)
41 3u4t_A TPR repeat-containing p 99.5 6.3E-12 2.1E-16 118.2 25.1 247 108-359 3-262 (272)
42 2h6f_A Protein farnesyltransfe 99.5 1.3E-11 4.3E-16 122.0 26.9 244 107-358 96-359 (382)
43 3uq3_A Heat shock protein STI1 99.5 5.8E-12 2E-16 117.1 23.2 224 144-414 6-236 (258)
44 2q7f_A YRRB protein; TPR, prot 99.5 4.2E-12 1.4E-16 117.0 21.8 213 141-359 21-234 (243)
45 2ooe_A Cleavage stimulation fa 99.5 1.1E-10 3.8E-15 121.3 34.7 318 90-415 29-455 (530)
46 2h6f_A Protein farnesyltransfe 99.5 2.8E-11 9.5E-16 119.6 27.8 246 143-396 97-364 (382)
47 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.5E-12 1.2E-16 119.9 20.2 186 120-312 17-205 (275)
48 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.4E-12 1.5E-16 119.3 20.4 223 85-314 17-245 (275)
49 2ooe_A Cleavage stimulation fa 99.5 3.2E-10 1.1E-14 117.8 35.8 317 90-414 63-492 (530)
50 1ouv_A Conserved hypothetical 99.4 2E-10 6.8E-15 108.1 29.0 228 142-415 5-252 (273)
51 3u4t_A TPR repeat-containing p 99.4 2.1E-10 7.3E-15 107.6 27.6 228 184-415 9-251 (272)
52 4a1s_A PINS, partner of inscut 99.4 1.4E-11 4.9E-16 123.3 18.2 278 107-414 47-372 (411)
53 2ond_A Cleavage stimulation fa 99.4 6.5E-10 2.2E-14 106.8 28.4 221 125-350 33-273 (308)
54 3vtx_A MAMA; tetratricopeptide 99.4 2.6E-10 8.8E-15 100.3 23.2 166 107-277 4-169 (184)
55 4a1s_A PINS, partner of inscut 99.3 2.7E-11 9.2E-16 121.3 17.5 259 91-350 66-375 (411)
56 3nf1_A KLC 1, kinesin light ch 99.3 4.4E-11 1.5E-15 114.4 18.3 242 107-349 26-309 (311)
57 1xi4_A Clathrin heavy chain; a 99.3 1.3E-09 4.3E-14 119.4 31.3 255 120-406 1088-1376(1630)
58 3ulq_A Response regulator aspa 99.3 3.3E-10 1.1E-14 112.4 24.9 294 119-414 23-368 (383)
59 3sf4_A G-protein-signaling mod 99.3 5.2E-11 1.8E-15 118.6 18.8 295 105-401 6-363 (406)
60 3sf4_A G-protein-signaling mod 99.3 4.5E-11 1.5E-15 119.1 18.3 273 140-414 6-336 (406)
61 3vtx_A MAMA; tetratricopeptide 99.3 5E-10 1.7E-14 98.5 23.0 167 142-313 4-170 (184)
62 3ro2_A PINS homolog, G-protein 99.3 5.2E-11 1.8E-15 114.9 18.0 277 109-414 6-332 (338)
63 4g1t_A Interferon-induced prot 99.3 8.6E-10 2.9E-14 112.5 27.3 291 107-415 135-460 (472)
64 2ond_A Cleavage stimulation fa 99.3 1.9E-09 6.6E-14 103.5 27.3 217 91-313 34-270 (308)
65 3ro2_A PINS homolog, G-protein 99.3 8E-11 2.7E-15 113.6 17.3 221 91-312 23-291 (338)
66 3nf1_A KLC 1, kinesin light ch 99.3 2.9E-11 1E-15 115.7 12.8 246 142-414 26-307 (311)
67 4abn_A Tetratricopeptide repea 99.3 6E-10 2E-14 113.9 22.9 214 159-379 84-318 (474)
68 4abn_A Tetratricopeptide repea 99.3 3.8E-10 1.3E-14 115.4 21.4 212 123-342 83-316 (474)
69 3as5_A MAMA; tetratricopeptide 99.3 7.7E-10 2.6E-14 96.7 20.5 164 109-277 9-172 (186)
70 3q15_A PSP28, response regulat 99.2 1.4E-09 4.7E-14 107.7 24.2 308 105-413 7-364 (378)
71 3as5_A MAMA; tetratricopeptide 99.2 1.4E-09 4.9E-14 94.9 20.1 165 144-313 9-173 (186)
72 1hz4_A MALT regulatory protein 99.2 2.5E-08 8.4E-13 98.3 28.3 234 111-344 17-279 (373)
73 4gyw_A UDP-N-acetylglucosamine 99.2 2.1E-09 7.2E-14 114.6 21.7 166 107-277 8-173 (723)
74 1xi4_A Clathrin heavy chain; a 99.2 4.5E-08 1.5E-12 107.5 31.9 277 106-409 1103-1440(1630)
75 3edt_B KLC 2, kinesin light ch 99.1 5.8E-10 2E-14 104.8 14.6 221 91-312 26-280 (283)
76 4gyw_A UDP-N-acetylglucosamine 99.1 3.2E-09 1.1E-13 113.2 21.5 166 142-312 8-173 (723)
77 4i17_A Hypothetical protein; T 99.1 1.2E-08 4.1E-13 93.0 22.6 201 106-320 5-214 (228)
78 3e4b_A ALGK; tetratricopeptide 99.1 9.5E-09 3.2E-13 104.3 23.1 291 107-416 68-389 (452)
79 3e4b_A ALGK; tetratricopeptide 99.1 6.3E-09 2.1E-13 105.6 19.3 299 90-416 20-353 (452)
80 4i17_A Hypothetical protein; T 99.0 2.9E-08 1E-12 90.3 21.3 208 141-361 5-223 (228)
81 3ulq_A Response regulator aspa 99.0 1.9E-08 6.5E-13 99.6 21.1 227 114-344 109-365 (383)
82 3edt_B KLC 2, kinesin light ch 99.0 4.1E-09 1.4E-13 98.8 14.5 169 107-277 84-280 (283)
83 2fo7_A Synthetic consensus TPR 99.0 3.2E-08 1.1E-12 81.0 17.6 126 111-239 4-129 (136)
84 2fo7_A Synthetic consensus TPR 99.0 4.4E-08 1.5E-12 80.2 17.5 127 146-276 4-130 (136)
85 1qqe_A Vesicular transport pro 98.9 3.3E-08 1.1E-12 94.0 17.4 175 123-312 32-227 (292)
86 1qqe_A Vesicular transport pro 98.9 4.2E-08 1.4E-12 93.3 17.9 202 109-312 38-268 (292)
87 3mv2_B Coatomer subunit epsilo 98.9 1.9E-07 6.6E-12 87.8 21.7 221 113-354 50-289 (310)
88 3q15_A PSP28, response regulat 98.9 3.7E-07 1.3E-11 90.1 24.3 226 114-344 107-362 (378)
89 1hz4_A MALT regulatory protein 98.8 4.8E-07 1.7E-11 88.9 23.1 266 147-414 18-322 (373)
90 3qky_A Outer membrane assembly 98.8 2.3E-07 7.9E-12 86.3 18.0 169 106-277 13-223 (261)
91 3urz_A Uncharacterized protein 98.8 3.5E-07 1.2E-11 82.1 17.9 183 109-321 5-192 (208)
92 3mv2_B Coatomer subunit epsilo 98.8 6E-07 2E-11 84.4 19.4 184 127-320 85-287 (310)
93 3rjv_A Putative SEL1 repeat pr 98.8 1.2E-06 4E-11 78.8 20.8 176 126-314 4-198 (212)
94 3urz_A Uncharacterized protein 98.7 5.9E-07 2E-11 80.5 18.0 136 146-288 57-194 (208)
95 3qky_A Outer membrane assembly 98.7 5.6E-07 1.9E-11 83.7 18.1 102 141-243 13-127 (261)
96 2pzi_A Probable serine/threoni 98.7 1E-07 3.5E-12 101.9 14.4 173 119-299 402-583 (681)
97 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.3E-06 4.4E-11 79.3 19.1 185 107-314 3-214 (225)
98 3dra_A Protein farnesyltransfe 98.7 1.6E-05 5.4E-10 75.3 27.0 220 160-413 50-286 (306)
99 3qou_A Protein YBBN; thioredox 98.7 4E-07 1.4E-11 86.2 16.0 164 107-274 116-280 (287)
100 2vsy_A XCC0866; transferase, g 98.7 5.8E-07 2E-11 94.0 18.6 152 122-278 3-157 (568)
101 3dra_A Protein farnesyltransfe 98.7 1.1E-05 3.7E-10 76.5 25.4 232 117-355 41-296 (306)
102 3qou_A Protein YBBN; thioredox 98.7 6.6E-07 2.3E-11 84.7 17.1 166 141-311 115-282 (287)
103 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.4E-06 8.1E-11 77.5 20.2 186 144-351 5-217 (225)
104 4e6h_A MRNA 3'-END-processing 98.7 2.9E-05 9.9E-10 81.9 31.1 200 213-416 343-572 (679)
105 2vsy_A XCC0866; transferase, g 98.7 6E-07 2E-11 93.9 17.9 154 156-314 2-158 (568)
106 2r5s_A Uncharacterized protein 98.6 4.6E-07 1.6E-11 78.8 14.1 162 111-276 9-171 (176)
107 2pzi_A Probable serine/threoni 98.6 9.5E-07 3.2E-11 94.3 19.2 171 154-332 402-581 (681)
108 2r5s_A Uncharacterized protein 98.6 2.9E-07 9.9E-12 80.1 12.3 161 146-311 9-171 (176)
109 3rjv_A Putative SEL1 repeat pr 98.6 7.2E-06 2.5E-10 73.6 21.8 175 93-280 6-199 (212)
110 2uy1_A Cleavage stimulation fa 98.6 6.9E-05 2.4E-09 76.4 29.9 307 89-413 30-412 (493)
111 4ga2_A E3 SUMO-protein ligase 98.6 1.7E-07 5.8E-12 79.3 8.7 84 183-269 36-119 (150)
112 4ga2_A E3 SUMO-protein ligase 98.6 3.2E-07 1.1E-11 77.6 10.0 139 119-263 8-148 (150)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.6 5E-06 1.7E-10 74.3 18.6 130 109-243 7-151 (213)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.5 4.1E-06 1.4E-10 74.8 18.0 128 145-279 8-151 (213)
115 2ifu_A Gamma-SNAP; membrane fu 98.5 2.1E-06 7.2E-11 82.0 16.9 162 149-311 42-222 (307)
116 4e6h_A MRNA 3'-END-processing 98.5 1.4E-05 5E-10 84.2 24.3 232 125-362 326-584 (679)
117 3u3w_A Transcriptional activat 98.5 2.9E-05 1E-09 73.4 23.5 162 149-311 81-264 (293)
118 2ifu_A Gamma-SNAP; membrane fu 98.5 3.3E-06 1.1E-10 80.6 16.9 190 110-305 38-253 (307)
119 1na0_A Designed protein CTPR3; 98.5 7.3E-06 2.5E-10 65.6 15.9 96 109-206 10-105 (125)
120 1a17_A Serine/threonine protei 98.5 7.5E-06 2.6E-10 69.6 16.7 129 108-239 13-143 (166)
121 1a17_A Serine/threonine protei 98.5 7.3E-06 2.5E-10 69.7 16.6 127 145-275 15-143 (166)
122 3u3w_A Transcriptional activat 98.5 5.8E-06 2E-10 78.3 17.4 166 112-277 79-265 (293)
123 1na0_A Designed protein CTPR3; 98.5 8.5E-06 2.9E-10 65.2 16.0 117 143-263 9-125 (125)
124 2qfc_A PLCR protein; TPR, HTH, 98.4 2.7E-05 9.4E-10 73.6 21.4 167 144-311 76-264 (293)
125 2qfc_A PLCR protein; TPR, HTH, 98.4 1.4E-05 4.8E-10 75.6 19.1 168 109-277 76-265 (293)
126 3gw4_A Uncharacterized protein 98.4 3.7E-06 1.3E-10 74.4 14.0 157 119-276 3-174 (203)
127 3q7a_A Farnesyltransferase alp 98.4 0.00019 6.3E-09 68.8 26.0 252 145-412 56-329 (349)
128 2vyi_A SGTA protein; chaperone 98.4 1E-05 3.4E-10 65.4 14.9 97 108-206 12-108 (131)
129 2lni_A Stress-induced-phosphop 98.4 9.4E-06 3.2E-10 66.0 14.7 100 106-207 14-113 (133)
130 2c2l_A CHIP, carboxy terminus 98.4 4E-05 1.4E-09 72.0 20.5 97 178-277 4-100 (281)
131 2vyi_A SGTA protein; chaperone 98.4 1.6E-05 5.4E-10 64.2 15.4 115 180-298 14-128 (131)
132 2lni_A Stress-induced-phosphop 98.3 1.5E-05 5.1E-10 64.8 14.6 94 144-239 17-110 (133)
133 4gco_A Protein STI-1; structur 98.3 1.9E-05 6.6E-10 64.2 14.9 94 111-206 16-109 (126)
134 2e2e_A Formate-dependent nitri 98.3 4.7E-06 1.6E-10 72.2 11.7 121 119-242 21-144 (177)
135 4gco_A Protein STI-1; structur 98.3 2.6E-05 8.8E-10 63.4 15.3 89 185-276 20-108 (126)
136 4f3v_A ESX-1 secretion system 98.3 1.4E-05 4.8E-10 74.1 15.1 188 120-314 18-238 (282)
137 3q7a_A Farnesyltransferase alp 98.3 0.00023 7.7E-09 68.2 23.8 184 111-300 57-258 (349)
138 3gw4_A Uncharacterized protein 98.3 6.4E-06 2.2E-10 72.8 12.4 157 154-312 3-175 (203)
139 3gyz_A Chaperone protein IPGC; 98.3 1.5E-05 5.1E-10 67.2 13.5 94 181-277 39-132 (151)
140 3gyz_A Chaperone protein IPGC; 98.3 1E-05 3.5E-10 68.1 12.5 97 144-242 37-133 (151)
141 1p5q_A FKBP52, FK506-binding p 98.3 1.8E-05 6E-10 76.6 15.9 127 144-275 148-291 (336)
142 1p5q_A FKBP52, FK506-binding p 98.3 1.9E-05 6.5E-10 76.4 15.9 130 107-240 146-292 (336)
143 2e2e_A Formate-dependent nitri 98.3 9.8E-06 3.3E-10 70.1 12.6 99 107-207 43-144 (177)
144 2c2l_A CHIP, carboxy terminus 98.3 2.8E-06 9.5E-11 80.1 9.6 99 107-207 3-101 (281)
145 1elw_A TPR1-domain of HOP; HOP 98.2 8E-05 2.7E-09 58.7 15.6 59 111-170 7-65 (118)
146 2vgx_A Chaperone SYCD; alterna 98.2 8.4E-06 2.9E-10 68.5 9.8 53 186-239 29-81 (148)
147 2vgx_A Chaperone SYCD; alterna 98.2 8.4E-06 2.9E-10 68.5 9.6 99 212-313 20-118 (148)
148 1elw_A TPR1-domain of HOP; HOP 98.1 0.0001 3.5E-09 58.1 15.3 113 142-258 3-115 (118)
149 4f3v_A ESX-1 secretion system 98.1 5.8E-05 2E-09 70.0 15.1 198 155-360 18-249 (282)
150 3dss_A Geranylgeranyl transfer 98.1 0.0023 7.8E-08 60.9 26.3 237 109-354 27-311 (331)
151 4b4t_Q 26S proteasome regulato 98.1 0.00021 7.2E-09 71.3 20.2 198 115-312 11-244 (434)
152 2dba_A Smooth muscle cell asso 98.1 0.00014 4.8E-09 60.1 15.8 109 106-218 26-138 (148)
153 3upv_A Heat shock protein STI1 98.1 0.00011 3.8E-09 59.3 14.7 91 183-276 9-99 (126)
154 3sz7_A HSC70 cochaperone (SGT) 98.1 9.3E-05 3.2E-09 63.0 14.7 96 179-277 12-107 (164)
155 1elr_A TPR2A-domain of HOP; HO 98.1 4.8E-05 1.6E-09 61.4 12.3 28 250-277 80-107 (131)
156 3upv_A Heat shock protein STI1 98.1 0.00011 3.6E-09 59.4 14.3 98 108-207 4-101 (126)
157 3q49_B STIP1 homology and U bo 98.1 0.00011 3.8E-09 60.1 14.4 94 179-275 10-103 (137)
158 2fbn_A 70 kDa peptidylprolyl i 98.1 9.3E-05 3.2E-09 65.2 14.8 88 179-269 89-176 (198)
159 3sz7_A HSC70 cochaperone (SGT) 98.1 8.1E-05 2.8E-09 63.4 13.8 99 107-207 10-108 (164)
160 2fbn_A 70 kDa peptidylprolyl i 98.0 9.8E-05 3.3E-09 65.1 14.7 132 108-241 38-185 (198)
161 2dba_A Smooth muscle cell asso 98.0 0.00018 6.2E-09 59.4 15.5 98 142-242 27-128 (148)
162 2xcb_A PCRH, regulatory protei 98.0 7.1E-05 2.4E-09 62.1 12.8 22 253-274 90-111 (142)
163 2kck_A TPR repeat; tetratricop 98.0 6.2E-05 2.1E-09 58.8 11.5 91 219-312 12-105 (112)
164 2xcb_A PCRH, regulatory protei 98.0 6.3E-05 2.2E-09 62.4 11.8 95 110-206 20-114 (142)
165 4gcn_A Protein STI-1; structur 98.0 0.00012 4E-09 59.5 13.2 104 214-321 9-118 (127)
166 2kck_A TPR repeat; tetratricop 98.0 8.7E-05 3E-09 57.9 11.8 99 177-278 5-106 (112)
167 3q49_B STIP1 homology and U bo 98.0 0.0002 6.8E-09 58.5 14.3 98 107-206 8-105 (137)
168 1elr_A TPR2A-domain of HOP; HO 98.0 8.8E-05 3E-09 59.7 11.9 98 109-207 5-108 (131)
169 4gcn_A Protein STI-1; structur 97.9 0.00015 5.1E-09 58.9 12.9 96 181-277 11-111 (127)
170 3ro3_A PINS homolog, G-protein 97.9 8.2E-05 2.8E-09 62.4 10.8 98 108-205 9-116 (164)
171 2uy1_A Cleavage stimulation fa 97.9 0.004 1.4E-07 63.3 25.0 94 111-207 18-118 (493)
172 3ro3_A PINS homolog, G-protein 97.8 0.00012 4.1E-09 61.3 11.1 132 181-312 12-157 (164)
173 3dss_A Geranylgeranyl transfer 97.8 0.012 4.1E-07 55.9 25.9 139 154-297 40-192 (331)
174 1wao_1 Serine/threonine protei 97.8 0.00021 7.2E-09 72.6 14.7 116 189-308 17-134 (477)
175 1hxi_A PEX5, peroxisome target 97.8 0.00016 5.4E-09 58.1 11.1 14 223-236 61-74 (121)
176 1hxi_A PEX5, peroxisome target 97.8 0.00024 8.1E-09 57.1 11.3 95 111-207 20-114 (121)
177 3k9i_A BH0479 protein; putativ 97.8 4.1E-05 1.4E-09 61.1 6.5 57 181-238 30-86 (117)
178 4b4t_Q 26S proteasome regulato 97.7 0.0048 1.7E-07 61.3 22.6 232 110-341 57-318 (434)
179 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.0005 1.7E-08 69.4 15.2 120 143-267 268-403 (457)
180 1wao_1 Serine/threonine protei 97.7 9.4E-05 3.2E-09 75.2 9.8 117 153-273 16-134 (477)
181 2xev_A YBGF; tetratricopeptide 97.7 0.0012 4.3E-08 52.9 14.9 89 115-206 9-104 (129)
182 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00038 1.3E-08 70.3 14.1 129 108-240 268-413 (457)
183 2xev_A YBGF; tetratricopeptide 97.7 0.0012 3.9E-08 53.1 14.3 88 187-277 11-104 (129)
184 3k9i_A BH0479 protein; putativ 97.7 9.8E-05 3.4E-09 58.8 7.3 86 191-278 3-90 (117)
185 1ihg_A Cyclophilin 40; ppiase 97.6 0.00045 1.6E-08 67.5 13.0 90 213-305 273-362 (370)
186 1ihg_A Cyclophilin 40; ppiase 97.6 0.00062 2.1E-08 66.6 13.7 139 109-270 224-362 (370)
187 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00031 1.1E-08 67.8 10.6 148 108-277 179-327 (338)
188 3rkv_A Putative peptidylprolyl 97.6 0.0011 3.6E-08 56.1 12.8 63 213-277 63-125 (162)
189 3rkv_A Putative peptidylprolyl 97.5 0.0014 4.7E-08 55.4 12.7 116 108-242 11-126 (162)
190 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00027 9.2E-09 68.3 9.0 96 145-242 232-328 (338)
191 3n71_A Histone lysine methyltr 97.4 0.00076 2.6E-08 68.3 11.7 125 188-312 319-463 (490)
192 1dce_A Protein (RAB geranylger 97.4 0.016 5.5E-07 59.9 21.9 168 194-366 45-240 (567)
193 3n71_A Histone lysine methyltr 97.4 0.00077 2.6E-08 68.2 11.2 125 153-277 319-463 (490)
194 2hr2_A Hypothetical protein; a 97.4 0.0023 7.7E-08 53.6 11.8 96 109-206 12-130 (159)
195 1klx_A Cysteine rich protein B 97.3 0.0078 2.7E-07 49.3 14.9 84 187-277 34-125 (138)
196 1klx_A Cysteine rich protein B 97.3 0.0026 8.8E-08 52.3 11.9 113 121-244 8-128 (138)
197 1dce_A Protein (RAB geranylger 97.3 0.014 4.8E-07 60.4 20.1 176 121-302 42-244 (567)
198 2hr2_A Hypothetical protein; a 97.3 0.0033 1.1E-07 52.6 12.3 62 215-276 59-129 (159)
199 2l6j_A TPR repeat-containing p 97.3 0.00033 1.1E-08 54.6 6.0 92 213-308 4-102 (111)
200 2kat_A Uncharacterized protein 97.2 0.0016 5.6E-08 51.2 9.3 77 197-276 4-80 (115)
201 2l6j_A TPR repeat-containing p 97.2 0.0023 7.7E-08 49.7 9.6 92 178-272 4-101 (111)
202 1na3_A Designed protein CTPR2; 97.1 0.0052 1.8E-07 45.5 10.8 21 254-274 48-68 (91)
203 2kat_A Uncharacterized protein 97.1 0.002 7E-08 50.7 8.9 62 178-240 19-80 (115)
204 1na3_A Designed protein CTPR2; 97.0 0.0083 2.8E-07 44.3 10.7 61 110-171 11-71 (91)
205 3ma5_A Tetratricopeptide repea 96.8 0.0041 1.4E-07 47.6 7.9 25 181-205 10-34 (100)
206 1zu2_A Mitochondrial import re 96.8 0.0056 1.9E-07 51.1 8.8 39 120-159 14-52 (158)
207 3ma5_A Tetratricopeptide repea 96.8 0.0059 2E-07 46.7 8.5 64 212-277 6-69 (100)
208 1zu2_A Mitochondrial import re 96.7 0.0037 1.3E-07 52.2 7.1 94 193-291 17-131 (158)
209 3mkq_A Coatomer beta'-subunit; 96.7 0.084 2.9E-06 57.0 20.0 156 116-311 607-763 (814)
210 3mkq_A Coatomer beta'-subunit; 96.2 0.1 3.5E-06 56.3 16.9 134 108-275 629-762 (814)
211 3ly7_A Transcriptional activat 96.1 0.068 2.3E-06 51.1 13.0 75 246-324 274-348 (372)
212 3qww_A SET and MYND domain-con 96.0 0.023 8E-07 56.3 9.5 86 227-312 312-410 (433)
213 3qww_A SET and MYND domain-con 95.9 0.044 1.5E-06 54.4 11.1 64 214-277 341-410 (433)
214 3qwp_A SET and MYND domain-con 95.9 0.077 2.6E-06 52.6 12.8 93 220-312 294-399 (429)
215 3qwp_A SET and MYND domain-con 95.8 0.045 1.6E-06 54.3 10.9 94 184-277 293-399 (429)
216 2kc7_A BFR218_protein; tetratr 95.8 0.037 1.3E-06 41.6 8.0 56 221-278 8-64 (99)
217 3mkq_B Coatomer subunit alpha; 95.6 0.82 2.8E-05 38.6 16.0 27 213-239 34-60 (177)
218 3ly7_A Transcriptional activat 95.5 0.28 9.6E-06 46.9 14.4 73 211-288 275-347 (372)
219 2kc7_A BFR218_protein; tetratr 95.5 0.058 2E-06 40.5 8.2 54 187-241 9-63 (99)
220 3mkq_B Coatomer subunit alpha; 95.0 1.4 4.6E-05 37.2 16.6 100 118-238 15-114 (177)
221 3u64_A Protein TP_0956; tetrat 94.8 0.95 3.3E-05 41.6 14.9 94 229-325 179-283 (301)
222 1wy6_A Hypothetical protein ST 94.6 1.3 4.4E-05 35.3 13.1 65 214-280 92-156 (172)
223 3bee_A Putative YFRE protein; 94.5 0.86 2.9E-05 33.9 12.0 47 194-241 25-71 (93)
224 1pc2_A Mitochondria fission pr 93.9 0.32 1.1E-05 40.0 8.9 78 162-241 17-99 (152)
225 1pc2_A Mitochondria fission pr 93.8 0.45 1.5E-05 39.1 9.6 82 194-278 14-100 (152)
226 1wy6_A Hypothetical protein ST 93.8 2.1 7.2E-05 34.1 14.8 138 156-316 20-157 (172)
227 3bee_A Putative YFRE protein; 93.7 0.39 1.3E-05 35.8 8.7 65 212-278 5-72 (93)
228 2v5f_A Prolyl 4-hydroxylase su 93.6 0.7 2.4E-05 35.1 10.2 66 106-171 3-74 (104)
229 2v5f_A Prolyl 4-hydroxylase su 93.5 0.81 2.8E-05 34.8 10.3 65 143-207 5-75 (104)
230 3fau_A NEDD4-binding protein 2 93.2 0.23 7.9E-06 36.1 6.4 77 429-508 2-79 (82)
231 3u64_A Protein TP_0956; tetrat 92.3 0.93 3.2E-05 41.6 10.3 91 124-218 179-282 (301)
232 4h7y_A Dual specificity protei 91.7 3.2 0.00011 33.8 11.6 103 106-210 11-126 (161)
233 2d9i_A NEDD4-binding protein 2 91.5 1.2 4.3E-05 33.3 8.7 78 428-508 9-87 (96)
234 4h7y_A Dual specificity protei 89.9 3.8 0.00013 33.3 10.5 100 141-242 11-123 (161)
235 4gns_B Protein CSD3, chitin bi 89.7 1.7 5.9E-05 45.8 10.8 125 147-275 252-397 (754)
236 1nzn_A CGI-135 protein, fissio 89.0 1.8 6.1E-05 34.2 7.9 20 222-241 83-102 (126)
237 2vkc_A NEDD4-binding protein 2 88.9 1.7 5.9E-05 34.9 8.0 78 428-508 54-132 (135)
238 2ff4_A Probable regulatory pro 88.8 6.4 0.00022 38.1 13.7 73 145-218 173-250 (388)
239 4gns_B Protein CSD3, chitin bi 88.6 5.1 0.00017 42.3 13.4 127 111-240 251-398 (754)
240 2ff4_A Probable regulatory pro 88.0 2.3 8E-05 41.2 9.9 72 252-324 174-250 (388)
241 1nzn_A CGI-135 protein, fissio 87.2 6.4 0.00022 31.0 10.1 82 194-278 17-103 (126)
242 1v54_E Cytochrome C oxidase po 86.9 2.7 9.4E-05 31.4 7.2 50 158-207 25-74 (109)
243 3lpz_A GET4 (YOR164C homolog); 85.9 23 0.00078 33.2 17.3 24 390-413 192-215 (336)
244 1v54_E Cytochrome C oxidase po 85.4 5.5 0.00019 29.8 8.1 50 264-313 25-74 (109)
245 3lvg_A Clathrin heavy chain 1; 85.0 0.008 2.7E-07 59.0 -9.2 262 107-406 53-325 (624)
246 4ady_A RPN2, 26S proteasome re 83.9 52 0.0018 35.6 19.3 256 119-386 385-662 (963)
247 2y69_E Cytochrome C oxidase su 83.4 7.5 0.00026 30.8 8.5 49 159-207 69-117 (152)
248 2wpv_A GET4, UPF0363 protein Y 81.9 33 0.0011 31.8 17.7 19 394-412 197-215 (312)
249 2y69_E Cytochrome C oxidase su 81.2 8.7 0.0003 30.5 8.1 62 265-327 69-130 (152)
250 4b4t_P 26S proteasome regulato 81.0 44 0.0015 32.8 20.7 172 104-277 52-246 (445)
251 4fhn_B Nucleoporin NUP120; pro 76.8 57 0.002 36.5 16.7 149 183-338 817-991 (1139)
252 4b4t_P 26S proteasome regulato 76.7 59 0.002 31.8 18.8 188 122-312 30-246 (445)
253 4fhn_B Nucleoporin NUP120; pro 75.6 52 0.0018 36.9 15.9 171 113-305 817-992 (1139)
254 3ltm_A Alpha-REP4; protein eng 74.5 39 0.0013 28.7 16.9 18 282-299 155-172 (211)
255 4ady_A RPN2, 26S proteasome re 72.4 1.1E+02 0.0039 33.1 21.0 224 112-346 415-657 (963)
256 3lpz_A GET4 (YOR164C homolog); 70.5 70 0.0024 29.9 28.8 168 109-311 36-214 (336)
257 3lvg_A Clathrin heavy chain 1; 70.0 0.0016 5.4E-08 63.8 -19.0 213 106-342 81-315 (624)
258 3eiq_C Programmed cell death p 68.9 56 0.0019 30.9 12.0 204 111-323 57-292 (358)
259 1wdy_A 2-5A-dependent ribonucl 68.5 8.9 0.0003 34.5 6.5 25 392-420 257-281 (285)
260 3txn_A 26S proteasome regulato 68.2 60 0.002 31.2 12.3 127 286-413 21-167 (394)
261 3esl_A Checkpoint serine/threo 67.3 40 0.0014 28.8 9.6 56 227-282 93-148 (202)
262 4b4t_R RPN7, 26S proteasome re 66.7 39 0.0013 33.0 11.0 61 110-170 133-195 (429)
263 4b4t_R RPN7, 26S proteasome re 66.5 59 0.002 31.7 12.3 98 179-277 132-236 (429)
264 3txn_A 26S proteasome regulato 66.2 95 0.0033 29.8 26.1 299 109-417 20-346 (394)
265 3ffl_A Anaphase-promoting comp 66.2 33 0.0011 28.3 8.6 28 285-312 123-150 (167)
266 3o48_A Mitochondria fission 1 64.4 46 0.0016 26.3 8.7 73 103-177 35-110 (134)
267 2zu6_B Programmed cell death p 62.6 14 0.00048 34.3 6.4 68 252-320 169-238 (307)
268 3ffl_A Anaphase-promoting comp 61.7 38 0.0013 27.9 8.2 119 111-242 23-151 (167)
269 3ltj_A Alpharep-4; protein eng 60.7 74 0.0025 26.6 18.5 143 105-264 25-167 (201)
270 1zbp_A Hypothetical protein VP 59.2 32 0.0011 31.0 7.8 53 223-277 7-59 (273)
271 3esl_A Checkpoint serine/threo 57.0 92 0.0032 26.6 10.8 75 102-176 71-148 (202)
272 4a1g_A Mitotic checkpoint seri 55.8 43 0.0015 27.2 7.4 51 232-282 84-134 (152)
273 2wpv_A GET4, UPF0363 protein Y 55.3 1.3E+02 0.0044 27.8 21.9 115 108-237 33-158 (312)
274 2wvi_A Mitotic checkpoint seri 53.8 46 0.0016 27.5 7.4 53 268-320 79-132 (164)
275 1k1a_A B-cell lymphoma 3-encod 53.5 9 0.00031 33.5 3.5 86 114-203 12-101 (241)
276 3o48_A Mitochondria fission 1 53.5 81 0.0028 24.9 10.4 67 175-241 37-106 (134)
277 3l6a_A Eukaryotic translation 51.8 1.6E+02 0.0055 27.8 13.4 74 110-188 14-93 (364)
278 2nsz_A Programmed cell death p 51.7 65 0.0022 25.2 7.8 65 252-317 10-76 (129)
279 2uwj_G Type III export protein 51.5 73 0.0025 23.8 7.2 29 246-276 67-95 (115)
280 2p58_C Putative type III secre 50.9 75 0.0026 23.7 8.1 13 224-236 51-63 (116)
281 3ltm_A Alpha-REP4; protein eng 50.4 1.1E+02 0.0039 25.6 18.5 172 105-297 30-201 (211)
282 1y8m_A FIS1; mitochondria, unk 48.7 1E+02 0.0035 24.7 11.3 71 105-177 36-109 (144)
283 3eu9_A Huntingtin-interacting 47.6 4.7 0.00016 35.3 0.5 10 295-304 185-194 (240)
284 1y8m_A FIS1; mitochondria, unk 47.4 1.1E+02 0.0037 24.5 12.3 66 176-241 37-105 (144)
285 3d5l_A Regulatory protein RECX 47.1 1E+02 0.0035 26.7 9.2 107 97-212 37-144 (221)
286 1zbp_A Hypothetical protein VP 45.0 1.7E+02 0.0059 26.2 13.5 51 189-240 8-58 (273)
287 2d2s_A Exocyst complex compone 44.6 1.1E+02 0.0039 26.8 9.1 90 113-205 23-118 (235)
288 1ug3_A EIF4GI, eukaryotic prot 43.6 64 0.0022 30.2 7.8 67 111-178 14-81 (339)
289 2ion_A PDCD4, programmed cell 43.2 58 0.002 26.4 6.5 65 252-317 12-78 (152)
290 4aez_C MAD3, mitotic spindle c 42.7 69 0.0023 27.9 7.1 52 231-282 132-183 (223)
291 3jxi_A Vanilloid receptor-rela 42.4 16 0.00055 32.4 3.3 57 114-170 8-73 (260)
292 2zu6_B Programmed cell death p 41.1 1.4E+02 0.0047 27.5 9.4 60 356-416 170-233 (307)
293 3rjo_A Endoplasmic reticulum a 40.9 2.5E+02 0.0086 26.9 22.5 155 215-381 199-372 (419)
294 1qsa_A Protein (soluble lytic 39.1 3.3E+02 0.011 27.8 25.0 111 299-412 229-346 (618)
295 4b4t_S RPN3, 26S proteasome re 38.6 77 0.0026 31.6 7.6 65 108-172 231-299 (523)
296 2uwj_G Type III export protein 38.3 1.2E+02 0.0042 22.6 10.7 80 331-415 19-98 (115)
297 3qd7_X Uncharacterized protein 38.0 50 0.0017 26.3 5.1 67 428-500 48-117 (137)
298 2ion_A PDCD4, programmed cell 38.0 1.2E+02 0.0042 24.5 7.6 68 111-179 12-81 (152)
299 2p58_C Putative type III secre 37.7 1.3E+02 0.0043 22.5 10.7 80 331-415 20-99 (116)
300 3ltj_A Alpharep-4; protein eng 37.0 1.8E+02 0.0061 24.1 18.4 142 141-299 26-167 (201)
301 1wdy_A 2-5A-dependent ribonucl 36.8 19 0.00064 32.2 2.9 58 112-177 6-66 (285)
302 1k1a_A B-cell lymphoma 3-encod 36.6 42 0.0014 29.0 5.1 28 150-177 13-40 (241)
303 2fu4_A Ferric uptake regulatio 36.2 1.1E+02 0.0037 21.3 6.9 30 196-225 35-64 (83)
304 3hra_A Ankyrin repeat family p 35.5 20 0.00067 30.2 2.6 16 117-132 11-26 (201)
305 2d2s_A Exocyst complex compone 35.2 1.7E+02 0.0059 25.6 8.7 89 148-239 23-117 (235)
306 2fu4_A Ferric uptake regulatio 34.5 1.1E+02 0.0036 21.3 6.1 33 160-192 34-66 (83)
307 4fke_A Aminopeptidase N; zinc 33.9 4.8E+02 0.016 28.1 15.2 165 182-350 690-863 (909)
308 2fe3_A Peroxide operon regulat 33.6 1.8E+02 0.0061 23.1 8.0 59 168-227 12-70 (145)
309 3eyy_A Putative iron uptake re 33.4 1.2E+02 0.0041 24.1 6.9 61 96-158 7-67 (145)
310 4a1g_A Mitotic checkpoint seri 33.2 1.9E+02 0.0066 23.3 9.9 50 162-211 84-134 (152)
311 3t8k_A Uncharacterized protein 32.2 1.2E+02 0.0041 25.2 7.1 91 118-212 13-108 (186)
312 2fe3_A Peroxide operon regulat 30.8 1.8E+02 0.0062 23.0 7.6 58 134-192 13-70 (145)
313 4aez_C MAD3, mitotic spindle c 30.4 2.6E+02 0.0089 24.2 8.7 55 266-320 131-186 (223)
314 2nsz_A Programmed cell death p 29.9 2E+02 0.0067 22.4 9.4 61 182-243 11-73 (129)
315 1mzb_A Ferric uptake regulatio 29.4 1.9E+02 0.0066 22.5 7.5 32 196-227 36-67 (136)
316 3aji_A 26S proteasome non-ATPa 29.0 42 0.0014 28.8 3.8 113 114-236 9-126 (231)
317 2zqe_A MUTS2 protein; alpha/be 28.7 1.2E+02 0.0042 21.5 5.5 68 429-507 6-78 (83)
318 3e3v_A Regulatory protein RECX 28.7 2.5E+02 0.0085 23.2 10.1 51 160-211 50-100 (177)
319 1ug3_A EIF4GI, eukaryotic prot 28.1 95 0.0032 29.1 6.2 63 146-209 14-77 (339)
320 2r9g_A AAA ATPase, central reg 27.7 2.8E+02 0.0097 23.5 8.6 38 261-299 26-63 (204)
321 3bbo_K Ribosomal protein L11; 27.4 13 0.00044 32.1 0.0 16 1-16 1-20 (224)
322 2wvi_A Mitotic checkpoint seri 26.9 2.6E+02 0.0089 22.9 10.3 74 102-178 57-131 (164)
323 3mv2_A Coatomer subunit alpha; 26.3 3.9E+02 0.013 24.7 11.4 50 301-350 187-239 (325)
324 3ljn_A Hypothetical protein; a 25.9 2.4E+02 0.0081 26.0 8.8 64 392-455 248-317 (364)
325 3bu8_A Telomeric repeat-bindin 25.8 3.2E+02 0.011 23.5 8.2 95 109-204 18-140 (235)
326 1lsh_A Lipovitellin (LV-1N, LV 25.8 7E+02 0.024 27.4 24.8 27 283-310 453-479 (1056)
327 2w57_A Ferric uptake regulatio 25.3 2.2E+02 0.0075 22.7 7.2 33 195-227 34-66 (150)
328 3pvs_A Replication-associated 25.0 4.8E+02 0.016 25.3 12.2 38 297-334 268-305 (447)
329 3eyy_A Putative iron uptake re 25.0 1.9E+02 0.0065 22.9 6.7 35 194-228 33-67 (145)
330 1oai_A Nuclear RNA export fact 24.1 45 0.0016 22.0 2.2 24 226-249 33-56 (59)
331 1mzb_A Ferric uptake regulatio 24.1 2.2E+02 0.0076 22.1 6.9 58 134-192 9-67 (136)
332 4ets_A Ferric uptake regulatio 23.7 2.4E+02 0.0081 22.9 7.1 57 170-227 25-83 (162)
333 2etb_A Transient receptor pote 23.2 67 0.0023 28.1 4.0 57 114-171 5-71 (256)
334 4ets_A Ferric uptake regulatio 23.1 1.5E+02 0.0052 24.1 5.9 69 125-194 14-85 (162)
335 2w57_A Ferric uptake regulatio 22.2 2.3E+02 0.008 22.5 6.7 35 229-264 33-67 (150)
336 3t8k_A Uncharacterized protein 21.9 1.7E+02 0.0059 24.2 6.2 19 265-283 90-108 (186)
337 3kea_A K1L; tropism, ANK repea 21.9 39 0.0013 30.5 2.2 186 114-320 34-224 (285)
338 3hra_A Ankyrin repeat family p 21.8 50 0.0017 27.5 2.8 81 153-238 12-94 (201)
339 2keb_A DNA polymerase subunit 21.6 2.5E+02 0.0085 20.7 6.6 31 162-192 28-58 (101)
340 2xig_A Ferric uptake regulatio 21.5 3.1E+02 0.011 21.8 8.2 59 168-227 17-75 (150)
341 2o03_A Probable zinc uptake re 21.2 1.4E+02 0.0049 23.1 5.1 43 185-227 17-59 (131)
342 3c1d_A Protein ORAA, regulator 20.9 3.3E+02 0.011 21.9 10.8 115 120-239 36-157 (159)
343 2pnn_A Transient receptor pote 20.8 30 0.001 30.9 1.1 57 113-169 15-80 (273)
344 3mwm_A ZUR, putative metal upt 20.4 1.3E+02 0.0045 23.7 4.8 44 184-227 19-62 (139)
345 1oyz_A Hypothetical protein YI 20.4 4.3E+02 0.015 23.0 23.3 48 106-157 35-82 (280)
346 2qx5_A Nucleoporin NIC96; mRNA 20.2 7.2E+02 0.025 25.6 14.3 89 328-419 452-569 (661)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4e-33 Score=285.97 Aligned_cols=205 Identities=17% Similarity=0.229 Sum_probs=181.1
Q ss_pred HhhHHHHHhhcCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hhH
Q 009506 92 EKSYDTRARNEKWRIDPN-AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR---------PWQ 161 (533)
Q Consensus 92 ~~~l~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~---------~~~ 161 (533)
+..+..++.+.+....+. .++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 345556777777766554 5899999999999999999999999999999999999999999988765 578
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
|.++|++|.+.|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 242 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
.|. .||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.|+..|+..
T Consensus 169 ~G~-~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEV-VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCC-CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 996 9999999999999999999999999999999999999999999999998764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.4e-32 Score=281.92 Aligned_cols=207 Identities=15% Similarity=0.191 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------h
Q 009506 125 DGCLNVYEEMKAIGVKPNM-ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY---------G 194 (533)
Q Consensus 125 ~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~ 194 (533)
..+..+.+++.+.++.... ..++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777766544 46899999999999999999999999999999999999999999998765 6
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (533)
++|.++|++|.+.|+.||..|||+||.+|++.|++++|+++|++|.+.|. .||..||++||.+|++.|++++|.++|++
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGI-QPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999996 99999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC
Q 009506 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT 332 (533)
Q Consensus 275 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 332 (533)
|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.|+..+...
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999998754
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.5e-26 Score=244.90 Aligned_cols=351 Identities=9% Similarity=-0.020 Sum_probs=250.5
Q ss_pred hHHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 009506 90 LKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEM 169 (533)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m 169 (533)
..+..++.++.. ..||..++..++.+|.+.|++++|+.+|+++.. ..+|..+++.++.+|.+.|++++|+++|+++
T Consensus 101 ~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 176 (597)
T 2xpi_A 101 KCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGET 176 (597)
T ss_dssp HHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS
T ss_pred hHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 356667777663 456777777888888888888888888877754 2567777777777777777777777777743
Q ss_pred HH-C--------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-------------------------
Q 009506 170 TD-N--------------GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGM------------------------- 209 (533)
Q Consensus 170 ~~-~--------------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~------------------------- 209 (533)
.. . |.+.+..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 256 (597)
T 2xpi_A 177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVL 256 (597)
T ss_dssp CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHH
Confidence 22 1 2334577777777777777777777777777754332
Q ss_pred ---------------------------------------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 009506 210 ---------------------------------------------QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN 244 (533)
Q Consensus 210 ---------------------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 244 (533)
.++..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 257 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 335 (597)
T 2xpi_A 257 KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID- 335 (597)
T ss_dssp HSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-
Confidence 2678889999999999999999999998888765
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 009506 245 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 324 (533)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 324 (533)
+.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.. ..+..+|..
T Consensus 336 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~ 412 (597)
T 2xpi_A 336 -PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIG 412 (597)
T ss_dssp -TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 4467778888888888888888888888877543 3467777788888888888888888888876642 224567777
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCH
Q 009506 325 LLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLL 401 (533)
Q Consensus 325 ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~ 401 (533)
++.++.+.|+ ++|.++++.+.+..|+.......++..|.+.|+. ++|.++|+++.. ..+..+|+.++.+|.+.|++
T Consensus 413 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 491 (597)
T 2xpi_A 413 FAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNI-LLANEYLQSSYALFQYDPLLLNELGVVAFNKSDM 491 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence 8888888777 8888888887777777666667777777777776 778888877643 23556778888888888888
Q ss_pred HHHHHHHHHHHhc----cccCCccccCccceeecccccCh-hhHHHHHHHHHHHHH
Q 009506 402 ENACKLLELGLTL----EVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIWINDLS 452 (533)
Q Consensus 402 ~~A~~l~~~m~~~----g~~~~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~~~~l~ 452 (533)
++|.++|++|.+. +..|+. ....|..+...+.. |...+|...+.+.++
T Consensus 492 ~~A~~~~~~~~~~~~~~~~~p~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 492 QTAINHFQNALLLVKKTQSNEKP---WAATWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHHHHHHHHHHHHSCCCSGG---GHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccchhh---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 8888888877665 333431 12235555555544 777777766665554
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.3e-26 Score=245.43 Aligned_cols=302 Identities=11% Similarity=0.001 Sum_probs=172.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
+++..|+.++..|.+.|++++|+.+|++|.. ..||..+++.++.+|.+.|++++|+.+|+++... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 4555566666666666666666666666653 2355566666666666666666666666655432 45566666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHc---------------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------
Q 009506 186 RAYGRARYGEDTLSVYREMKEK---------------GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN------ 244 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------ 244 (533)
.+|.+.|++++|.++|+++... |...+..+|+.++.+|.+.|++++|+++|++|.+.+.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 6666666666666666532111 2233456666666666666666666666655543210
Q ss_pred ---------------------------------------------------------------CCCCHHHHHHHHHHHHh
Q 009506 245 ---------------------------------------------------------------CQPDSWTFSSMITICSC 261 (533)
Q Consensus 245 ---------------------------------------------------------------~~p~~~~~~~li~~~~~ 261 (533)
.+++..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 01455566666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHH
Q 009506 262 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKL 340 (533)
Q Consensus 262 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~ 340 (533)
.|++++|.++|+++.+.+ +.+..+++.++.+|.+.|++++|..+|+++.+.. ..+..++..+...|.+.|+ ++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 666666666666665543 2245556666666666666666666666665432 2244555666666666666 666666
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 341 VECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
|+.+.+..|........++..|.+.|+. ++|.++|+++.. ..+..+|+.++.+|.+.|++++|.++|++|.+.
T Consensus 396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 396 FSKSSTMDPQFGPAWIGFAHSFAIEGEH-DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666655555555555566666666655 666666655432 224455666666666666666666666666543
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.90 E-value=2.9e-20 Score=185.75 Aligned_cols=301 Identities=14% Similarity=0.062 Sum_probs=204.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
+.++..|..+...|.+.|++++|++.|+++.+.. +.+..+|..+..++.+.|++++|++.|+++.+.. +-+...+..+
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 141 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDL 141 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4466677777777777777777777777776532 2234567777777777777777777777776643 2234556666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
...|...|++++|.++|+++.+.... +..+|+.+...+.+.|++++|++.|+++.+.+ +.+...|..+...+...|+
T Consensus 142 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~ 218 (388)
T 1w3b_A 142 GNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARI 218 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCC
Confidence 66777777777777777777765433 56677777777777777777777777776654 3456667777777777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHH
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVEC 343 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~ 343 (533)
+++|...|++..+.. +.+..++..+...|.+.|++++|...|+++.+.+. .+..++..+...+.+.|+ ++|.+.++.
T Consensus 219 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 296 (388)
T 1w3b_A 219 FDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp TTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777766542 22466777777777777777777777777766431 134566777777777777 777777777
Q ss_pred HHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Cc-cchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 344 VEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
+.+..|+.......++..+...|+. ++|...|+++.. .| +...|..+...|.+.|++++|...|+++.+
T Consensus 297 al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 297 ALRLCPTHADSLNNLANIKREQGNI-EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCH-HHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHhhCcccHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7777776666666777777777766 777777776643 22 344677777777777777777777777765
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.89 E-value=4.9e-20 Score=184.09 Aligned_cols=341 Identities=14% Similarity=0.079 Sum_probs=283.4
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+...+..+.+.. +.++..+..+...+.+.|++++|...++...+.. +.+..+|+.+..++.+.|++++|++.|+++.
T Consensus 17 ~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 94 (388)
T 1w3b_A 17 AAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHAL 94 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455555555432 3356677888888999999999999999988753 4578899999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+.. +.+..+|..+..+|.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+++.+.. +.+..
T Consensus 95 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 170 (388)
T 1w3b_A 95 RLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNFAV 170 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHH
Confidence 753 345678999999999999999999999999987544 56677888899999999999999999998764 45789
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC-CHHHHHHHHHHH
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP-DDRFCGCLLNVM 329 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~ 329 (533)
+|..+...|.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...|++..+.. | +..++..+...+
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHH
Confidence 99999999999999999999999998854 3357789999999999999999999999988753 4 467888999999
Q ss_pred hcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHH
Q 009506 330 TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACK 406 (533)
Q Consensus 330 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 406 (533)
...|+ ++|...++.+.+.+|+.......++..+.+.|+. ++|.+.|+++.. +.+..+|+.+...|.+.|++++|..
T Consensus 248 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV-AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999 9999999999999999888888999999999987 999999998753 3466789999999999999999999
Q ss_pred HHHHHHhccccCCccccCccceeecccccCh-hhHHHHHHHH
Q 009506 407 LLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIW 447 (533)
Q Consensus 407 l~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~ 447 (533)
.++++.+. .|+. ...|..+...+.. |...+|+..+
T Consensus 327 ~~~~al~~--~p~~----~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 327 LYRKALEV--FPEF----AAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHHHHTTS--CTTC----HHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHhc--CCCc----HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99998764 2432 2233333333333 7777777765
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=2.7e-19 Score=182.14 Aligned_cols=300 Identities=9% Similarity=-0.011 Sum_probs=255.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
.++..+..+...|.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 367789999999999999999999999998752 4578999999999999999999999999999865 45688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCH---HHHHHHH------------HHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSV---TLYNTLL------------AMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li------------~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
.+|.+.|++++|.+.|+++.+.... +. ..+..++ ..+.+.|++++|++.|+++.+.. +.+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChH
Confidence 9999999999999999999986433 33 5665554 44889999999999999998765 56889
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH-HHHHHH----
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDD-RFCGCL---- 325 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~l---- 325 (533)
.+..+..+|.+.|++++|.++|+++.+.. +.+..+|..+...|...|++++|...|+++.+. .|+. ..+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 99999999999999999999999988753 356899999999999999999999999999865 3443 344444
Q ss_pred --------HHHHhcCCh-HHHHHHHHHHHhcCCChhH----HHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHH
Q 009506 326 --------LNVMTQTPK-EELGKLVECVEKSNSKLGY----VVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNC 390 (533)
Q Consensus 326 --------l~~~~~~~~-~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~ 390 (533)
...+.+.|+ ++|..+++.+.+..|+... ....++..+.+.|+. ++|...++++.. +.+...|..
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP-VEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCcccHHHHHH
Confidence 778888899 9999999999998888543 346778888899987 999999998643 335679999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 391 LIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 391 li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
+..+|.+.|++++|...++++.+.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999999999999999999999874
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.83 E-value=1.7e-17 Score=168.74 Aligned_cols=291 Identities=11% Similarity=0.026 Sum_probs=242.8
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+..++..+.+.. +.+...|..+...|.+.|++++|+..|+++.+.+ +.+..+|..+..+|.+.|++++|++.|+++.
T Consensus 44 ~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 121 (450)
T 2y4t_A 44 DALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 121 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566666666542 4578999999999999999999999999998864 3468899999999999999999999999999
Q ss_pred HCCCCCC-H---HHHHHHH------------HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 009506 171 DNGLSPN-W---NTYASLL------------RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 234 (533)
Q Consensus 171 ~~g~~p~-~---~~~~~ll------------~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (533)
+.. |+ . ..+..+. ..|.+.|++++|..+|+++.+.... +..++..+..+|.+.|++++|++
T Consensus 122 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 198 (450)
T 2y4t_A 122 KSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAIS 198 (450)
T ss_dssp TSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHH
T ss_pred hcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHH
Confidence 864 44 3 5565554 4488999999999999999987544 78899999999999999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCChhH
Q 009506 235 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSL------------IQCYGKAQRTDD 302 (533)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l------------i~~~~~~g~~~~ 302 (533)
+|+++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+...+..+ ...|.+.|++++
T Consensus 199 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (450)
T 2y4t_A 199 DLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 275 (450)
T ss_dssp HHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 999998764 5678999999999999999999999999998753 2234445444 788999999999
Q ss_pred HHHHHHHhhhCCCCCC-----HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHH
Q 009506 303 VVRALNRLPELGITPD-----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 376 (533)
Q Consensus 303 a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~ 376 (533)
|..+|+++.+.. |+ ...+..+..++.+.|+ ++|...++.+.+..|+.......++..+...|++ ++|...|
T Consensus 276 A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~-~~A~~~~ 352 (450)
T 2y4t_A 276 ATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMY-DEAIQDY 352 (450)
T ss_dssp HHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred HHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH-HHHHHHH
Confidence 999999998743 44 3478888999999999 9999999999999998888888999999999987 9999999
Q ss_pred hhhcc-Cc-cchhhHHHH
Q 009506 377 NSISK-DV-KKAYCNCLI 392 (533)
Q Consensus 377 ~~~~~-~~-~~~~~~~li 392 (533)
++... .| +...+..+.
T Consensus 353 ~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 353 ETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHTTSSSCHHHHHHHH
T ss_pred HHHHHhCcchHHHHHHHH
Confidence 98753 33 344555555
No 9
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=6.8e-21 Score=200.77 Aligned_cols=170 Identities=13% Similarity=0.156 Sum_probs=136.0
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA---IGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 181 (533)
..-..+||+||++|++.|++++|.++|++|.+ .|+.||++|||+||++|++.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33467899999999999999999999998864 489999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009506 182 ASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 260 (533)
Q Consensus 182 ~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 260 (533)
|+||+++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+.+-++.+.++...+.-.....|...+...|.+.|.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 9999999999985 789999999999999999999999998776654333333332222111111122556667788888
Q ss_pred hcCC---------hHHHHHHHHH
Q 009506 261 CRGK---------VSEAEAMFNE 274 (533)
Q Consensus 261 ~~g~---------~~~A~~~~~~ 274 (533)
+.+. .++-...|++
T Consensus 284 ~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 284 KDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp CCSCCCCCCCSSCHHHHHHHHHH
T ss_pred cCCCCcCccccCCHHHHHHHHHH
Confidence 7662 3555555554
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=1.6e-16 Score=155.95 Aligned_cols=302 Identities=9% Similarity=-0.029 Sum_probs=251.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
|+..+..+...+.+.|++++|+..|+++.+.. +.+..+|..+...+...|++++|+..|+++.+.. +-+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45678889999999999999999999998753 3468899999999999999999999999999764 347789999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQ--LSVTLYNTL------------LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF 252 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~ 252 (533)
.|.+.|++++|...|++..+.... .+...+..+ ...+...|++++|.++|+++.+.. +.+...+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 157 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELR 157 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHH
Confidence 999999999999999999887431 144455444 578899999999999999998865 5678899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHH---------
Q 009506 253 SSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG--------- 323 (533)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--------- 323 (533)
..+...|...|++++|...++++.+.. +.+...+..+...|...|++++|...|++..+.... +...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHH
Confidence 999999999999999999999988753 457889999999999999999999999999875322 223322
Q ss_pred ---HHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHH----HHHHHhhhhhccHHHHHHHHHhhhcc-C-ccchhhHHHHH
Q 009506 324 ---CLLNVMTQTPK-EELGKLVECVEKSNSKLGYVV----KLLLEEQDIEGDFKKEATELFNSISK-D-VKKAYCNCLID 393 (533)
Q Consensus 324 ---~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~~a~~~~~~~~~-~-~~~~~~~~li~ 393 (533)
.+...+.+.|+ ++|...++.+.+..|+..... ..++..+...|+. ++|...|++... . .+...|..+..
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKP-VEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCH-HHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 22556778888 999999999999888865442 4567888888987 999999988753 3 35668999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcc
Q 009506 394 LCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 394 ~~~~~g~~~~A~~l~~~m~~~g 415 (533)
.|.+.|++++|...|+++.+..
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999987653
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=6e-17 Score=167.49 Aligned_cols=301 Identities=11% Similarity=0.013 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
...|..+...|.+.|++++|+..|+++.... ||...|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456667777777888888888888877643 677778888888888888888888888777654 3456677778888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCc--------------------------------------------------------
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQL-------------------------------------------------------- 211 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~-------------------------------------------------------- 211 (533)
|.+.|++++|...|+++.+.+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 888888888888887776654210
Q ss_pred ----------------------CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCCC-------CCCHHHHHH
Q 009506 212 ----------------------SVTLYNTLLAMCAD---VGYTDEAFEIFEDMKS-----SENC-------QPDSWTFSS 254 (533)
Q Consensus 212 ----------------------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~-------~p~~~~~~~ 254 (533)
+...+..+...+.. .|++++|.++|+++.+ .... +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 02223333333333 7888888888887766 3110 123556777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh
Q 009506 255 MITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334 (533)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 334 (533)
+...|...|++++|..+|+++.+.. |+...+..+...|...|++++|...|+++.+... .+...+..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCC
Confidence 7788888888888888888877754 3477777788888888888888888888776532 245567777777888887
Q ss_pred -HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 335 -EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELG 411 (533)
Q Consensus 335 -~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 411 (533)
++|...++.+.+..|........++..+...|+. ++|...|++... ..+...|..+...|.+.|++++|...++++
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKF-DDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCH-HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888888877777766667777777777876 788888777543 234557777888888888888888888877
Q ss_pred Hhcc
Q 009506 412 LTLE 415 (533)
Q Consensus 412 ~~~g 415 (533)
....
T Consensus 399 ~~~~ 402 (514)
T 2gw1_A 399 IELE 402 (514)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6543
No 12
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.79 E-value=7.7e-17 Score=166.67 Aligned_cols=341 Identities=13% Similarity=-0.019 Sum_probs=273.2
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+...+.++.+.. ||+..|..+..+|.+.|++++|+..|+++.+.. +.+..+|..+..++.+.|++++|+..|+++.
T Consensus 24 ~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 24 DAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4566777777655 799999999999999999999999999998754 3467899999999999999999999999997
Q ss_pred HCCCCCC-------------------------------------------------------------------------
Q 009506 171 DNGLSPN------------------------------------------------------------------------- 177 (533)
Q Consensus 171 ~~g~~p~------------------------------------------------------------------------- 177 (533)
+.+- ++
T Consensus 101 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (514)
T 2gw1_A 101 LNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFAN 179 (514)
T ss_dssp HSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSS
T ss_pred hcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHH
Confidence 7541 11
Q ss_pred ------HHHHHHHHHHHH---hcCChHHHHHHHHHHHH-----cCC--------CcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009506 178 ------WNTYASLLRAYG---RARYGEDTLSVYREMKE-----KGM--------QLSVTLYNTLLAMCADVGYTDEAFEI 235 (533)
Q Consensus 178 ------~~~~~~ll~~~~---~~g~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (533)
...+..+...+. +.|++++|..+|+++.+ ... +.+..++..+...+...|++++|.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 259 (514)
T 2gw1_A 180 YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED 259 (514)
T ss_dssp CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 233333333333 38999999999999988 311 22467788889999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 009506 236 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 315 (533)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 315 (533)
|+++.+.. |+...|..+...|...|++++|...|+++.+.. +.+...+..+...|...|++++|...|++..+...
T Consensus 260 ~~~~l~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 335 (514)
T 2gw1_A 260 IKKAIELF---PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335 (514)
T ss_dssp HHHHHHHC---CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS
T ss_pred HHHHHhhC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh
Confidence 99998865 338889999999999999999999999988753 34677899999999999999999999999987643
Q ss_pred CCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc----Ccc----ch
Q 009506 316 TPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK----DVK----KA 386 (533)
Q Consensus 316 ~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~----~~~----~~ 386 (533)
. +...+..+...+...|+ ++|..+++.+.+..|........++..+...|+. ++|...|++... .++ ..
T Consensus 336 ~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~a~~~~~~~~~~~~~~~ 413 (514)
T 2gw1_A 336 E-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF-DKALKQYDLAIELENKLDGIYVGIA 413 (514)
T ss_dssp S-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTSSSCSSCSH
T ss_pred h-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhhhccchHHHHHH
Confidence 3 45678888999999999 9999999999999888888888889999999987 999999987643 111 23
Q ss_pred hhHHHHHHHHh---cCCHHHHHHHHHHHHhccccCCccccCccceeecccccCh-hhHHHHHHHH
Q 009506 387 YCNCLIDLCVN---LNLLENACKLLELGLTLEVYTDIQSRSPTQWSLHLKSLSL-GAALTALHIW 447 (533)
Q Consensus 387 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~~~~~~~~~~~~~~~l~~~~~-g~~~~a~~~~ 447 (533)
.|..+...|.+ .|++++|...++++.... |+. ...|..+...+.. |...+|...+
T Consensus 414 ~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~----~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLD--PRS----EQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC--TTC----HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC--ccc----HHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88999999999 999999999999987653 332 2223333333333 7777777766
No 13
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.79 E-value=1.7e-19 Score=190.29 Aligned_cols=151 Identities=13% Similarity=0.148 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 009506 177 NWNTYASLLRAYGRARYGEDTLSVYREMK---EKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 253 (533)
Q Consensus 177 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~---~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 253 (533)
-..|||+||++|++.|++++|.++|++|. ..|+.||++|||+||++||+.|++++|.++|++|.+.|. .||.+|||
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~-~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL-TPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-CCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCcHHHHH
Confidence 34688888888888888888888887765 357888888888888888888888888888888888885 88888888
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC------HHHHHHHH
Q 009506 254 SMITICSCRGKV-SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD------DRFCGCLL 326 (533)
Q Consensus 254 ~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~~~~~ll 326 (533)
+||.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..+..|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 888888888874 67888888888888888888888888766554 334444444 3344444 44556666
Q ss_pred HHHhcCC
Q 009506 327 NVMTQTP 333 (533)
Q Consensus 327 ~~~~~~~ 333 (533)
+.|++.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6777544
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.8e-16 Score=153.74 Aligned_cols=290 Identities=9% Similarity=-0.031 Sum_probs=241.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
..++..+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..++..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4456677888999999999999999999998753 3355667778888999999999999999999854 4467889999
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 185 LRAYGRAR-YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 185 l~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
...|...| ++++|.+.|++..+.... +...|..+...+...|++++|++.|++..+.. +.+...+..+...|...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHh
Confidence 99999999 999999999999887544 67789999999999999999999999998865 445677888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC--------CCCCHHHHHHHHHHHhcCCh-
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG--------ITPDDRFCGCLLNVMTQTPK- 334 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~ll~~~~~~~~- 334 (533)
++++|.+.|++..+.. +.+...+..+...|...|++++|...|++..+.. ...+..++..+...+...|+
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999988753 3467889999999999999999999999987631 13335688889999999999
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Cc-cchhhHHHHHHH-HhcCCH
Q 009506 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-KKAYCNCLIDLC-VNLNLL 401 (533)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~-~~~~~~~li~~~-~~~g~~ 401 (533)
++|...++.+.+..|+.......++..+...|+. ++|.+.|++... .| +...+..+..++ ...|+.
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNF-ENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCH-HHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccH-HHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999999999999888888888889999999987 999999988754 33 455777777777 455554
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=4.5e-16 Score=153.70 Aligned_cols=287 Identities=11% Similarity=-0.028 Sum_probs=214.3
Q ss_pred HHHcCChHHHHH-HHHHHHHCCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009506 118 YGTAGNFDGCLN-VYEEMKAIGV-KP--NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 193 (533)
Q Consensus 118 ~~~~g~~~~A~~-~~~~m~~~g~-~p--d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 193 (533)
+...|++++|++ .|++...... .| +...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..+|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334578888888 7776543211 11 34557778888889999999999999988764 4567888888889999999
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHH---------------HHHH
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSS---------------MITI 258 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~---------------li~~ 258 (533)
+++|...|+++.+.... +..++..+...|...|++++|.+.|+++.... +.+...+.. .+..
T Consensus 114 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 114 ELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHH
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999988887543 77888888899999999999999998888754 222222221 2334
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HH
Q 009506 259 CSCRGKVSEAEAMFNEMLEAGFE-PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EE 336 (533)
Q Consensus 259 ~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~ 336 (533)
+...|++++|..+|+++.+..-. ++..++..+...|.+.|++++|...|+++.+.. ..+..++..+...+...|+ ++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHH
Confidence 44888999999999998875311 147888889999999999999999999987753 2246688888888889888 99
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-Cc-c-----------chhhHHHHHHHHhcCCHHH
Q 009506 337 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DV-K-----------KAYCNCLIDLCVNLNLLEN 403 (533)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~-~-----------~~~~~~li~~~~~~g~~~~ 403 (533)
|...++.+.+..|+.......++..+...|+. ++|...|++... .| + ..+|..+..+|.+.|+.++
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAH-REAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 99999998888888877778888889888987 889988887542 11 1 4689999999999999999
Q ss_pred HHHHHHH
Q 009506 404 ACKLLEL 410 (533)
Q Consensus 404 A~~l~~~ 410 (533)
|..++++
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 9988764
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.4e-15 Score=147.37 Aligned_cols=268 Identities=9% Similarity=-0.022 Sum_probs=226.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 009506 140 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219 (533)
Q Consensus 140 ~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 219 (533)
..+...+..+...+...|++++|+++|+++.+.. +.+..++..++..+.+.|++++|..+++++.+.... +...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 4566677888889999999999999999998764 345567777888999999999999999999987544 67889999
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009506 220 LAMCADVG-YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 298 (533)
Q Consensus 220 i~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 298 (533)
...+...| ++++|.+.|++..+.. +.+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...|...|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 99999999 9999999999998765 4567889999999999999999999999988754 234667777999999999
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcC---------CChhHHHHHHHHhhhhhccH
Q 009506 299 RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSN---------SKLGYVVKLLLEEQDIEGDF 368 (533)
Q Consensus 299 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~ 368 (533)
++++|...|++..+.. ..+...+..+...+...|+ ++|...++.+.+.. +........++..+...|+.
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999998764 3356788889999999999 99999999887754 44445668888899999987
Q ss_pred HHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 369 KKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 369 ~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
++|...|++... +.+...|..+...|.+.|++++|.+.+++..+.
T Consensus 253 -~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 253 -AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp -HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred -HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999988653 335678999999999999999999999987543
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.72 E-value=4.7e-15 Score=154.30 Aligned_cols=301 Identities=11% Similarity=0.072 Sum_probs=240.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
....|..+...+.+.|++++|++.|+++.+.. +.+...|..+..+|.+.|++++|++.|+++.+.. +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 35668888999999999999999999998753 3478889999999999999999999999998864 456788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCC------------------------------------CcCHH----------------
Q 009506 187 AYGRARYGEDTLSVYREMKEKGM------------------------------------QLSVT---------------- 214 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~------------------------------------~~~~~---------------- 214 (533)
+|.+.|++++|...|+.+....- .|+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999998864311100 01111
Q ss_pred --------------HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHhcCCh
Q 009506 215 --------------LYNTLLAMCAD--------VGYTDEAFEIFEDMKSSENCQPD-------SWTFSSMITICSCRGKV 265 (533)
Q Consensus 215 --------------~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~~p~-------~~~~~~li~~~~~~g~~ 265 (533)
....+...+.. .|++++|.++|+++.+.. +.+ ..+|..+...+...|++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~ 259 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNL 259 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccH
Confidence 11112222211 247899999999998754 233 33577777889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHH
Q 009506 266 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~ 344 (533)
++|...|++..+.. |+...+..+...|...|++++|...|+++.+.. ..+..++..+...+...|+ ++|...++.+
T Consensus 260 ~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 260 LDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp HHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999998854 678889999999999999999999999998764 2356788889999999999 9999999999
Q ss_pred HhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 345 EKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 345 ~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
.+..|........++..+...|+. ++|...|++... +.+...|..+...|.+.|++++|...++++.+..
T Consensus 337 ~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 337 QSLNPENVYPYIQLACLLYKQGKF-TESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHCTTCSHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999998888888899999999987 999999988653 3356689999999999999999999999997765
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.72 E-value=3e-14 Score=139.51 Aligned_cols=296 Identities=10% Similarity=0.001 Sum_probs=239.0
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
.+...+..+.+.. +.++..|..+...|.+.|++++|+..|+++.+.. +-+...|..+...+...|++++|+..|+++.
T Consensus 21 ~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 98 (359)
T 3ieg_A 21 DALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 98 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4556666666543 3468899999999999999999999999998753 2367889999999999999999999999999
Q ss_pred HCCCCC----CHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 009506 171 DNGLSP----NWNTYASL------------LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE 234 (533)
Q Consensus 171 ~~g~~p----~~~~~~~l------------l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 234 (533)
+.. | +...+..+ ...+...|++++|.++++++.+.... +...+..+...+...|++++|.+
T Consensus 99 ~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~ 175 (359)
T 3ieg_A 99 KSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAIS 175 (359)
T ss_dssp TSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHH
Confidence 753 5 44455444 57889999999999999999987544 78899999999999999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH------------HHHHHHHhcCChhH
Q 009506 235 IFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT------------SLIQCYGKAQRTDD 302 (533)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~------------~li~~~~~~g~~~~ 302 (533)
.++++.+.. +.+..++..+...|...|++++|...|++..+.. +.+...+. .+...+.+.|++++
T Consensus 176 ~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 252 (359)
T 3ieg_A 176 DLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252 (359)
T ss_dssp HHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 999998865 5688999999999999999999999999988753 22333333 23667899999999
Q ss_pred HHHHHHHhhhCCCCCCHH----HHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHh
Q 009506 303 VVRALNRLPELGITPDDR----FCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 377 (533)
Q Consensus 303 a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~ 377 (533)
|...|+++.+.... +.. .+..+...+...|+ ++|...++.+.+..|+.......++..+...|+. ++|.+.|+
T Consensus 253 A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~A~~~~~ 330 (359)
T 3ieg_A 253 ATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMY-DEAIQDYE 330 (359)
T ss_dssp HHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH-HHHHHHHH
T ss_pred HHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH-HHHHHHHH
Confidence 99999999875422 222 34457788889999 9999999999999998888888999999999987 99999999
Q ss_pred hhcc-Cc-cchhhHHHHHHHH
Q 009506 378 SISK-DV-KKAYCNCLIDLCV 396 (533)
Q Consensus 378 ~~~~-~~-~~~~~~~li~~~~ 396 (533)
+... .| +...+..+..+..
T Consensus 331 ~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 331 AAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhcCCCChHHHHHHHHHHH
Confidence 8754 33 3445555554443
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=1.9e-15 Score=149.25 Aligned_cols=279 Identities=11% Similarity=-0.041 Sum_probs=204.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
+...|..+...+.+.|++++|+++|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44558888999999999999999999998753 3478889999999999999999999999998764 456889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC---------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQ---------LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
.|.+.|++++|...|+++.+.... .....+..+...+.+.|++++|+++|+++.+...-..+..+|..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998875321 01233445577888899999999999998876521126888999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HH
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EE 336 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~ 336 (533)
.|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|...|++..+.. ..+..++..+..++...|+ ++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999987753 3457888899999999999999999999887753 2235677777778877777 77
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009506 337 LGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 410 (533)
Q Consensus 337 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 410 (533)
|...++.+.+..|+..... + ......+...|..+..++...|+.+.|..+.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~----------~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQ----------Q-----------VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC---------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCc----------c-----------cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7777776655443321100 0 000011355788888888899998888777664
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=1.4e-15 Score=150.13 Aligned_cols=232 Identities=9% Similarity=-0.057 Sum_probs=166.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
+...|..+...+.+.|++++|+++|+++.+.. +.+..++..+...|.+.|++++|+..|+++.+.... +..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 44558888888999999999999999998764 457888999999999999999999999998887543 6888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPD----------SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PNLFVLTSL 290 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l 290 (533)
.|...|++++|++.|+++.+.. +.+ ...+..+...|.+.|++++|.++|+++.+..-. .+..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999998887643 111 223344577888888999999999888775311 157788888
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHH
Q 009506 291 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFK 369 (533)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 369 (533)
...|...|++++|...|++..+.. ..+..++..+..++...|+ ++|...++.+.+..|+.......++..|...|+.
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~- 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY- 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH-
Confidence 888888899999998888887653 2245677777777777777 7777777776666665554445555555555554
Q ss_pred HHHHHHHhhh
Q 009506 370 KEATELFNSI 379 (533)
Q Consensus 370 ~~a~~~~~~~ 379 (533)
++|...|++.
T Consensus 298 ~~A~~~~~~a 307 (365)
T 4eqf_A 298 REAVSNFLTA 307 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.70 E-value=6.3e-15 Score=153.28 Aligned_cols=278 Identities=12% Similarity=0.045 Sum_probs=148.0
Q ss_pred HhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009506 92 EKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 171 (533)
Q Consensus 92 ~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (533)
+...+..+.+.. +.++..|..+..+|.+.|++++|++.|+++.+.. +.+..+|..+..++...|++++|++.|+.+..
T Consensus 44 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 121 (537)
T 3fp2_A 44 AIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSL 121 (537)
T ss_dssp CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 444555555433 3478899999999999999999999999998753 34678889999999999999999988853311
Q ss_pred CC------------------------------------CCCCHH------------------------------HHHHHH
Q 009506 172 NG------------------------------------LSPNWN------------------------------TYASLL 185 (533)
Q Consensus 172 ~g------------------------------------~~p~~~------------------------------~~~~ll 185 (533)
.. ..|+.. ....+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 201 (537)
T 3fp2_A 122 NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQ 201 (537)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHH
Confidence 00 001000 011111
Q ss_pred HHHHh--------cCChHHHHHHHHHHHHcCCCcC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 186 RAYGR--------ARYGEDTLSVYREMKEKGMQLS-------VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 186 ~~~~~--------~g~~~~a~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
..+.. .|++++|..+|+++.+.... + ..+|..+...+...|++++|.+.|++..+. .|+..
T Consensus 202 ~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~---~~~~~ 277 (537)
T 3fp2_A 202 RLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL---HPTPN 277 (537)
T ss_dssp HHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc---CCCch
Confidence 11111 12444555555555443221 1 123444444455555555555555555443 23344
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 330 (533)
.|..+...|...|++++|.+.|+++.+.. +.+..+|..+...|...|++++|...|++..+.... +...+..+...+.
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~ 355 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 55555555555555555555555544432 123444555555555555555555555555443211 2234444555555
Q ss_pred cCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhh
Q 009506 331 QTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNS 378 (533)
Q Consensus 331 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~ 378 (533)
..|+ ++|...++.+.+..|+.......++..+...|+. ++|...|++
T Consensus 356 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 403 (537)
T 3fp2_A 356 KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDF-DTAIKQYDI 403 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH-HHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH-HHHHHHHHH
Confidence 5555 5555555555555555444444445555555544 455555444
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.70 E-value=1.3e-16 Score=156.65 Aligned_cols=275 Identities=12% Similarity=0.049 Sum_probs=138.8
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
++.....++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|++.++..+
T Consensus 21 ~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 21 RAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444444444 34569999999999999999999999663 688899999999999999999999777776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+. .+++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+ .
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~ 149 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------S 149 (449)
T ss_dssp ----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----------T
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------h
Confidence 64 4668899999999999999999998885 267789999999999999999999999977 2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT 330 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 330 (533)
.|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++.-...++..|.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQ 218 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHH
Confidence 5999999999999999999999987 48999999999999999999996655543 234444557999999
Q ss_pred cCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhh--ccHHHHHHHHHhh-hccCc------cchhhHHHHHHHHhcCC
Q 009506 331 QTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIE--GDFKKEATELFNS-ISKDV------KKAYCNCLIDLCVNLNL 400 (533)
Q Consensus 331 ~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~~a~~~~~~-~~~~~------~~~~~~~li~~~~~~g~ 400 (533)
+.|. +++..+++......+....+.+-|...|++- |++ .+.+++|.+ +..++ +...|..+.-.|.+.++
T Consensus 219 k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~-~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e 297 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM-REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 297 (449)
T ss_dssp HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHH-HHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhch
Confidence 9999 9999999999988888877777777666654 555 566666654 33222 45689999999999999
Q ss_pred HHHHHHHH
Q 009506 401 LENACKLL 408 (533)
Q Consensus 401 ~~~A~~l~ 408 (533)
++.|....
T Consensus 298 ~d~A~~tm 305 (449)
T 1b89_A 298 YDNAIITM 305 (449)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99997743
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=6.3e-15 Score=145.44 Aligned_cols=266 Identities=12% Similarity=0.018 Sum_probs=220.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
+...+..+...|.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|++.|+++.+.. +.+..++..+..
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 140 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAV 140 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 34567889999999999999999999999864 4478899999999999999999999999999865 457889999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNT---------------LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT 251 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~ 251 (533)
.|...|++++|...|+++.+.... +...+.. .+..+...|++++|.+.|+++.+...-.++..+
T Consensus 141 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 219 (368)
T 1fch_A 141 SFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 219 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHH
Confidence 999999999999999999986543 2222211 244444889999999999999886521116899
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhc
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQ 331 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 331 (533)
+..+...|.+.|++++|...|+++.+.. +.+...|..+...|.+.|++++|...|+++.+.. ..+...+..+..++.+
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 297 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCIN 297 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 9999999999999999999999988753 3457899999999999999999999999998753 2356788899999999
Q ss_pred CCh-HHHHHHHHHHHhcCCCh-----------hHHHHHHHHhhhhhccHHHHHHHHHhh
Q 009506 332 TPK-EELGKLVECVEKSNSKL-----------GYVVKLLLEEQDIEGDFKKEATELFNS 378 (533)
Q Consensus 332 ~~~-~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~~a~~~~~~ 378 (533)
.|+ ++|...++.+....|+. ......++..+...|+. ++|..++++
T Consensus 298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 355 (368)
T 1fch_A 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS-DAYGAADAR 355 (368)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG-GGHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh-HhHHHhHHH
Confidence 999 99999999988776665 56668888899888987 788777653
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.69 E-value=1.1e-14 Score=140.98 Aligned_cols=275 Identities=11% Similarity=-0.013 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 188 (533)
..+..+...+.+.|++++|+.+|+++.+.. +.+...|..+..++...|++++|.+.|+++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 346677888899999999999999998753 3477889999999999999999999999998864 45788999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTL--------------LA-MCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 253 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 253 (533)
...|++++|.+.++++.+.... +...+..+ .. .+...|++++|.+.++++.+.. +.+...+.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 176 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQLHA 176 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHHHHH
Confidence 9999999999999999886433 22223222 22 3677788899999998887764 45788888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC
Q 009506 254 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP 333 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 333 (533)
.+...|.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++.+.. ..+...+..+...+...|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g 254 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS 254 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence 88899999999999999998887753 3457788888888888999999999888887653 224556677777777777
Q ss_pred h-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 334 K-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELG 411 (533)
Q Consensus 334 ~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 411 (533)
+ ++|.+.++.+....|...... + . .....+...|..+..+|.+.|+.++|..++++.
T Consensus 255 ~~~~A~~~~~~a~~~~~~~~~~~----------~----~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 255 QYDLAAKQLVRAIYMQVGGTTPT----------G----E-------ASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CHHHHHHHHHHHHHHHTTSCC--------------------------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHHhCCcccccc----------c----c-------chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7 677766666554443310000 0 0 000002346666777777777777777776643
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=2.3e-14 Score=138.67 Aligned_cols=270 Identities=11% Similarity=0.037 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 223 (533)
..|..+...+...|++++|+.+|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.... +..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHH
Confidence 345567777888889999999998888754 346778888888888888888888888888876433 677888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009506 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSM--------------IT-ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 288 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 288 (533)
...|++++|++.|+++.+.. +.+...+..+ .. .+...|++++|.++++++.+.. +.+...+.
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 176 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHA 176 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 88888888888888887653 2233333332 22 2556667777777777766543 23566666
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhcc
Q 009506 289 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 367 (533)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (533)
.+...|...|++++|...++++.+.. ..+..++..+...+...|+ ++|...++.+.+..|
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------------------ 237 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP------------------ 237 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------------
Confidence 77777777777777777777765542 1133444445555554444 444444443333222
Q ss_pred HHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhccccCCcc------ccCccceeecccccCh-hhH
Q 009506 368 FKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTLEVYTDIQ------SRSPTQWSLHLKSLSL-GAA 440 (533)
Q Consensus 368 ~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~------~~~~~~~~~~l~~~~~-g~~ 440 (533)
.+...|..+...|.+.|++++|.+.++++.......... ......|..+...+.. |..
T Consensus 238 ---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 238 ---------------GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp ---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred ---------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 234466677777777888888888877776544221000 0033344444555544 666
Q ss_pred HHHHHHHHHHHH
Q 009506 441 LTALHIWINDLS 452 (533)
Q Consensus 441 ~~a~~~~~~~l~ 452 (533)
..|...+...++
T Consensus 303 ~~A~~~~~~~l~ 314 (327)
T 3cv0_A 303 DLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHTTCCSH
T ss_pred HHHHHHHHHHHH
Confidence 667666554443
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=2.6e-14 Score=136.50 Aligned_cols=227 Identities=11% Similarity=0.124 Sum_probs=99.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP-NWNTYASLLRAYGR 190 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~ 190 (533)
..+.++|...|+++.|+..++.. -.|+..++..+...+...++.++|++.++++...+..| +...+..+...|.+
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~ 113 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFY 113 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHH
Confidence 33444555555555555443321 12344444444444555555555555555554443222 23333444444555
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHhcCChHH
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTF---SSMITICSCRGKVSE 267 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~---~~li~~~~~~g~~~~ 267 (533)
.|++++|++.+++ ..+...+..+...|.+.|++++|.+.|+++.+.. |+.... ..++..+...|++++
T Consensus 114 ~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~~~e 184 (291)
T 3mkr_A 114 DQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD---EDATLTQLATAWVSLAAGGEKLQD 184 (291)
T ss_dssp TTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTHHHH
T ss_pred CCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhCchHHHH
Confidence 5555555555444 1244444445555555555555555555544432 221100 112222233344555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-H-HHHHHHHHHH
Q 009506 268 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-E-ELGKLVECVE 345 (533)
Q Consensus 268 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~-~a~~~~~~~~ 345 (533)
|..+|+++.+. .+.+...++.+..++.+.|++++|...|++..+.. .-+..++..++..+...|+ . .+.++++.+.
T Consensus 185 A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 185 AYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55555554443 22344444555555555555555555555544432 1133344444444444444 2 2334444444
Q ss_pred hcCCChhH
Q 009506 346 KSNSKLGY 353 (533)
Q Consensus 346 ~~~~~~~~ 353 (533)
+.+|+...
T Consensus 263 ~~~P~~~~ 270 (291)
T 3mkr_A 263 DAHRSHPF 270 (291)
T ss_dssp HHCTTCHH
T ss_pred HhCCCChH
Confidence 44444443
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.62 E-value=2.3e-13 Score=129.85 Aligned_cols=275 Identities=9% Similarity=0.051 Sum_probs=220.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNM--ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 192 (533)
|+-....|++..|+..++..... .|+. .....+..+|...|+++.|+..++.. -+|+..++..+...|...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCC
Confidence 34456789999999999876542 3443 35566789999999999999877552 3577889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 009506 193 YGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAM 271 (533)
Q Consensus 193 ~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (533)
+.++|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999887555 456667777899999999999999987 35778999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc
Q 009506 272 FNEMLEAGFEPNLFVL---TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS 347 (533)
Q Consensus 272 ~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~ 347 (533)
|+++.+.. |+.... ..++..+...|++++|..+|+++.+. ...+...++.+..++.+.|+ ++|...++.+...
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99998864 553321 23344455669999999999999887 34577789999999999999 9999999999999
Q ss_pred CCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-CccchhhHHHHHHHHhcCCHHHHHHHH
Q 009506 348 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-DVKKAYCNCLIDLCVNLNLLENACKLL 408 (533)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~ 408 (533)
+|+....+..++..+...|+..+.+.++++++.. .|+-. .+.+...+.+.++++..-|
T Consensus 230 ~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~---~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 230 DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP---FIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHHHHHHHc
Confidence 9999988888888888889875567888887653 34333 3556677788888876544
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=4e-13 Score=125.02 Aligned_cols=226 Identities=9% Similarity=0.044 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCC----HHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPN----WNTY 181 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~~~ 181 (533)
...|..+...+.+.|++++|+..|+++.+.. .+...|..+..++...|++++|++.|++..+.. ..++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4678889999999999999999999998876 788899999999999999999999999988642 1122 5789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC 261 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (533)
..+...|.+.|++++|...|++..+.. |+. ..+.+.|++++|.+.++.+.... +.+...|..+...|..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHH
Confidence 999999999999999999999998864 332 34666788999999999988754 4467788899999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHH
Q 009506 262 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKL 340 (533)
Q Consensus 262 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~ 340 (533)
.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. ..+...+..+...+...|+ ++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999988754 3467889999999999999999999999998764 2346678888889999998 899988
Q ss_pred HHHHHhcC
Q 009506 341 VECVEKSN 348 (533)
Q Consensus 341 ~~~~~~~~ 348 (533)
++.+.+..
T Consensus 230 ~~~a~~~~ 237 (258)
T 3uq3_A 230 LDAARTKD 237 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 88877665
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.59 E-value=3.7e-11 Score=123.62 Aligned_cols=301 Identities=14% Similarity=0.041 Sum_probs=212.3
Q ss_pred hHHhhHHHHHhhcCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhH
Q 009506 90 LKEKSYDTRARNEKWRIDPNAFSTLIKLYGT----AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AKRPWQ 161 (533)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~ 161 (533)
..+...+.+..+.| ++..+..|...|.. .+++++|++.|++..+.| +...+..|-..|.. .+++++
T Consensus 60 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 60 TQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 34555555555544 56777888888888 888888888888887754 66677777777777 678888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHH
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAF 233 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~ 233 (533)
|++.|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..|...|.. .++.++|+
T Consensus 134 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 134 SVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 888888888765 56677777777776 678888888888887765 66777777777777 78888888
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHH
Q 009506 234 EIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK----AQRTDDVVR 305 (533)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~ 305 (533)
+.|++..+.+ +...+..+...|.. .+++++|.++|++..+.| +...+..|...|.. .++.++|..
T Consensus 208 ~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 208 QWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 8888877643 45667777777775 678888888888877653 45566666666666 778888888
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhcC-----Ch-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhc---cHHHHHHHHH
Q 009506 306 ALNRLPELGITPDDRFCGCLLNVMTQT-----PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG---DFKKEATELF 376 (533)
Q Consensus 306 ~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~~a~~~~ 376 (533)
+|++..+.| +...+..+...+... ++ ++|.++++...+.++. .....++..|...| +. ++|.+.|
T Consensus 281 ~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~--~a~~~lg~~y~~~g~~~~~-~~A~~~~ 354 (490)
T 2xm6_A 281 WYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA--TAQANLGAIYFRLGSEEEH-KKAVEWF 354 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHSCCHHHH-HHHHHHH
T ss_pred HHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCcccH-HHHHHHH
Confidence 888877664 445555566666654 55 7777777777665433 22344444444423 33 7777777
Q ss_pred hhhccCccchhhHHHHHHHHh----cCCHHHHHHHHHHHHhcc
Q 009506 377 NSISKDVKKAYCNCLIDLCVN----LNLLENACKLLELGLTLE 415 (533)
Q Consensus 377 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 415 (533)
++.....+...+..|...|.. .+++++|...|++..+.|
T Consensus 355 ~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 355 RKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 776655666677777777777 677778877777776655
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.57 E-value=3e-15 Score=146.97 Aligned_cols=248 Identities=11% Similarity=0.081 Sum_probs=105.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009506 120 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 199 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 199 (533)
+.|++++|.++++++. +..+|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 6788999999999993 334999999999999999999999965 2678899999999999999999999
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 200 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 200 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
.++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 88877764 4467889999999999999999998884 477789999999999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHH
Q 009506 280 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLL 358 (533)
Q Consensus 280 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l 358 (533)
..|..|+.++.+.|++++|.+.++++ .+..+|..++.+|...|+ +.|......+. ..| +. ...+
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~a--d~-l~~l 213 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHA--DE-LEEL 213 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCH--HH-HHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCH--hh-HHHH
Confidence 37999999999999999999999998 378899999999999999 88855443322 222 22 3357
Q ss_pred HHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhc--CCHHHHHHHHH
Q 009506 359 LEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNL--NLLENACKLLE 409 (533)
Q Consensus 359 ~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~--g~~~~A~~l~~ 409 (533)
+..|.+.|.+ ++|..+++..-. ......|+-|.-+|++- +++.+.+++|.
T Consensus 214 v~~Yek~G~~-eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 214 INYYQDRGYF-EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHHHHHTTCH-HHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHHHHHCCCH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7888899987 999999887643 22345778887777766 34555555554
No 31
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.56 E-value=8e-11 Score=121.09 Aligned_cols=286 Identities=11% Similarity=0.019 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCH
Q 009506 107 DPNAFSTLIKLYGT----AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPNW 178 (533)
Q Consensus 107 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~ 178 (533)
|+..+..|...|.. .+++++|+..|++..+.| +...+..|-..|.. .+++++|++.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55666666666666 666666766666666542 45556666666666 666666666666666654 44
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHH
Q 009506 179 NTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 179 ~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
..+..|-..|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|++.|++..+.+ +..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~ 184 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVW 184 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHH
Confidence 555556666665 566666666666666654 45555556666655 566666666666666532 455
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHH
Q 009506 251 TFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK----AQRTDDVVRALNRLPELGITPDDRFC 322 (533)
Q Consensus 251 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~ 322 (533)
.+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|..+|++..+.| +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 66666666665 666666666666666543 44555555555554 566666666666666553 33444
Q ss_pred HHHHHHHhc----CCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhh-----ccHHHHHHHHHhhhccCccchhhHHHH
Q 009506 323 GCLLNVMTQ----TPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIE-----GDFKKEATELFNSISKDVKKAYCNCLI 392 (533)
Q Consensus 323 ~~ll~~~~~----~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~~a~~~~~~~~~~~~~~~~~~li 392 (533)
..+-..+.. .++ ++|.++++...+.+. ......|+..|... ++. ++|...|++.....+...+..|.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~--~~a~~~Lg~~y~~~~~g~~~~~-~~A~~~~~~a~~~~~~~a~~~lg 335 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQGN--SDGQYYLAHLYDKGAEGVAKNR-EQAISWYTKSAEQGDATAQANLG 335 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTC--HHHHHHHHHHHHHCBTTBCCCH-HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCCCCcCCH-HHHHHHHHHHHhcCCHHHHHHHH
Confidence 444444444 444 666666666554432 22223444444433 444 66666666655545555666666
Q ss_pred HHHHhcC---CHHHHHHHHHHHHhc
Q 009506 393 DLCVNLN---LLENACKLLELGLTL 414 (533)
Q Consensus 393 ~~~~~~g---~~~~A~~l~~~m~~~ 414 (533)
..|.+.| +.++|++.|++..+.
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHC
Confidence 6666555 566666666666554
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.55 E-value=2.1e-12 Score=119.99 Aligned_cols=202 Identities=13% Similarity=0.040 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
+..|..+...|...|++++|++.|+++.+.. +.+...|..+...+...|++++|++.|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678889999999999999999999998753 3467889999999999999999999999998764 3477889999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
|...|++++|.++|+++.+.+..| +...+..+...|...|++++|.+.|++..+.. +.+...+..+...|...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCCHH
Confidence 999999999999999988733334 56778888899999999999999999988764 456888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 267 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
+|...|+++.+.. +.+...+..+...|...|+.++|.++++++.+..
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9999999987643 3567788888889999999999999999987753
No 33
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=3.4e-12 Score=115.94 Aligned_cols=203 Identities=7% Similarity=-0.061 Sum_probs=164.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
++..|..+...|.+.|++++|++.|+++.+.. +.+...|..+...+...|++++|.+.|+++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 46678888899999999999999999988753 3467788888899999999999999999988754 446788888889
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 187 AYGRA-RYGEDTLSVYREMKEKGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 187 ~~~~~-g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
.|... |++++|...++++.+.+..| +...+..+...+...|++++|++.|+++.+.. +.+...+..+...|.+.|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHcCC
Confidence 99999 99999999999888733233 36778888888999999999999998887754 4567888888889999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
+++|.++++++.+..-..+...+..+...+...|+.+.+..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 9999999988877532146677777778888889999888888888654
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.54 E-value=4.9e-12 Score=129.28 Aligned_cols=315 Identities=11% Similarity=0.070 Sum_probs=222.9
Q ss_pred hhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009506 93 KSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI--------GVKPNMITYNNLLDTMGRAKRPWQVKT 164 (533)
Q Consensus 93 ~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~pd~~~~~~li~~~~~~g~~~~a~~ 164 (533)
..+...............||.|...|...|++++|++.|++..+. .......+|+.+..+|...|++++|..
T Consensus 36 ~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~ 115 (472)
T 4g1t_A 36 DKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQI 115 (472)
T ss_dssp HHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHH
Confidence 344444444444556778999999999999999999999987542 122346789999999999999999999
Q ss_pred HHHHHHHC-----C-CC-CCHHHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCcCHHHHHHHHHH---HHhcCCHHHH
Q 009506 165 IYKEMTDN-----G-LS-PNWNTYASLLRAYGRA--RYGEDTLSVYREMKEKGMQLSVTLYNTLLAM---CADVGYTDEA 232 (533)
Q Consensus 165 ~~~~m~~~-----g-~~-p~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A 232 (533)
.|++..+. + .. ....++..+..++.+. +++++|+..|++..+.... +...+..+..+ +...++.++|
T Consensus 116 ~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 116 YVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp HHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHH
Confidence 99887642 1 11 2346676666666554 5689999999999887543 45555555544 4456788889
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 233 FEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (533)
++.+++..+.. +.+...+..+...+.. .|++++|.+++++..... +.+...+..+...|...|++++|...|+
T Consensus 195 l~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 195 IDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp HHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 99998887754 4567777766655554 467889999999887753 3567888999999999999999999999
Q ss_pred HhhhCCCCCC-HHHHHHHHHHHhcC-------------------Ch-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhcc
Q 009506 309 RLPELGITPD-DRFCGCLLNVMTQT-------------------PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGD 367 (533)
Q Consensus 309 ~m~~~g~~p~-~~~~~~ll~~~~~~-------------------~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 367 (533)
+..+.. |+ ..++..+...+... +. +++...++...+.+|........++..+...|+
T Consensus 272 ~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 272 KALEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 988753 44 44555554444321 12 566677777888888887777888999999998
Q ss_pred HHHHHHHHHhhhcc-Cccch----hhHHHHH-HHHhcCCHHHHHHHHHHHHhc
Q 009506 368 FKKEATELFNSISK-DVKKA----YCNCLID-LCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 368 ~~~~a~~~~~~~~~-~~~~~----~~~~li~-~~~~~g~~~~A~~l~~~m~~~ 414 (533)
. ++|.+.|++.-. .++.. .+..+.. .+.+.|+.++|+..|++..+.
T Consensus 350 ~-~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 350 Y-EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp H-HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred H-HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7 999999987642 22221 2333333 345779999999999987754
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=1.3e-12 Score=118.85 Aligned_cols=200 Identities=17% Similarity=0.087 Sum_probs=139.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
++++..+..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..|++..+.. +-+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3456677888888888888888888888887643 3367778888888888888888888888888754 3456778888
Q ss_pred HHHHHhc-----------CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH
Q 009506 185 LRAYGRA-----------RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS 253 (533)
Q Consensus 185 l~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~ 253 (533)
...|.+. |++++|+..|++..+.... +...|..+...|...|++++|++.|++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHH
Confidence 8888888 8888888888877776443 56777777777888888888888887777653 5667777
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009506 254 SMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 311 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 311 (533)
.+...|...|++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 77778888888888888888776643 2346677777777778888888877777653
No 36
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=4.7e-11 Score=112.49 Aligned_cols=226 Identities=14% Similarity=0.048 Sum_probs=198.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGR----AKRPWQVKTIYKEMTDNGLSPNWNTYA 182 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~ 182 (533)
++..+..+...|.+.|++++|+..|++..+. -+...+..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5677888999999999999999999999883 466788889999999 999999999999999876 788999
Q ss_pred HHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHHHHHH
Q 009506 183 SLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSWTFSS 254 (533)
Q Consensus 183 ~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~ 254 (533)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHH
Confidence 99999999 999999999999999875 78889999999999 999999999999998854 5677888
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 009506 255 MITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK----AQRTDDVVRALNRLPELGITPDDRFCGCLL 326 (533)
Q Consensus 255 li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 326 (533)
+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8888888 999999999999998864 57788889999999 999999999999998875 366777788
Q ss_pred HHHhc----CCh-HHHHHHHHHHHhcCCCh
Q 009506 327 NVMTQ----TPK-EELGKLVECVEKSNSKL 351 (533)
Q Consensus 327 ~~~~~----~~~-~~a~~~~~~~~~~~~~~ 351 (533)
..+.. .++ ++|.+.++...+.+++.
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 88887 777 99999999888877643
No 37
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.52 E-value=9.7e-12 Score=112.90 Aligned_cols=210 Identities=9% Similarity=-0.039 Sum_probs=173.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
+...|..+...+...|++++|++.|+++.+.. +.+..++..+...|...|++++|.+.++++.+.... +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 45678888999999999999999999998754 456889999999999999999999999999887543 7788999999
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 009506 222 MCADV-GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 300 (533)
Q Consensus 222 ~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 300 (533)
.|... |++++|.+.|+++.+.+..+.+...+..+...|...|++++|...|+++.+.. +.+...+..+...|.+.|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 99999999999998733213347788899999999999999999999988753 23578899999999999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHH
Q 009506 301 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 354 (533)
Q Consensus 301 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~ 354 (533)
++|..+|+++.+.....+...+..+...+...|+ +++..+++.+.+..|+....
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999998875432456677777777778888 88888888887777765544
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=1.7e-12 Score=119.74 Aligned_cols=203 Identities=11% Similarity=0.128 Sum_probs=157.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
.++..|..+...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++.+.. +.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 456678888889999999999999999998753 3468889999999999999999999999998764 45788899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
..|...|++++|.+.++++.+.... +...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...|.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999887543 67888899999999999999999999988764 45788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 266 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
++|.+.|+++.+.. +.+..++..+..+|.+.|++++|...|+++.+..
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999999987753 3457788899999999999999999999987753
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=1.3e-11 Score=114.62 Aligned_cols=208 Identities=10% Similarity=-0.002 Sum_probs=176.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009506 143 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222 (533)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 222 (533)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4567788888999999999999999998764 457889999999999999999999999999887544 78889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009506 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 302 (533)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 302 (533)
|...|++++|+++|+++...+..+.+...+..+...|.+.|++++|.+.|++..+.. +.+...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998733213467788899999999999999999999988754 3458889999999999999999
Q ss_pred HHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHH
Q 009506 303 VVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYV 354 (533)
Q Consensus 303 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~ 354 (533)
|..+|+++.+.. ..+...+..+...+...|+ ++|.++++.+.+..|+....
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 999999988753 2456677888888888888 99999999888887765544
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.51 E-value=2.7e-12 Score=116.74 Aligned_cols=198 Identities=13% Similarity=0.069 Sum_probs=140.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 009506 140 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTL 219 (533)
Q Consensus 140 ~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l 219 (533)
+++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...|.+.|++++|+..|++..+.... +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 3566677788888888888888888888888754 456778888888888888888888888888877544 67778888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009506 220 LAMCADV-----------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 288 (533)
Q Consensus 220 i~~~~~~-----------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 288 (533)
...+.+. |++++|++.|++..+.. +.+...|..+...|...|++++|...|++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 8888888 88888888888877654 3467777888888888888888888888877766 6777788
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHH
Q 009506 289 SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 289 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~ 344 (533)
.+..+|...|++++|...|++..+.. .-+...+..+..++...|+ ++|...++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 88888888888888888888877643 1234466666666767666 6666655543
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=6.3e-12 Score=118.15 Aligned_cols=247 Identities=8% Similarity=-0.004 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP--NWNTYASLL 185 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll 185 (533)
+..+......+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|++.|++..+.+-.+ ...+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3445667788899999999999999998753 2245588889999999999999999999999843222 234588999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
..|.+.|++++|+..|++..+.... +..+|..+...|...|++++|++.|++..+.. +.+...|..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987544 66889999999999999999999999988764 55777888887344445699
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhCC-CCCC------HHHHHHHHHHHhcCCh-
Q 009506 266 SEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR---TDDVVRALNRLPELG-ITPD------DRFCGCLLNVMTQTPK- 334 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~------~~~~~~ll~~~~~~~~- 334 (533)
++|.+.|++..+.. +.+...+..+...+...|+ .++|...|++..+.. -.|+ ..++..+...+...|+
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999988753 2347778888888888888 888999888876542 1223 1467778888888888
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHH
Q 009506 335 EELGKLVECVEKSNSKLGYVVKLLL 359 (533)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~ 359 (533)
++|.+.++.+.+.+|+.......+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 238 VKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHHHHHHhcCccHHHHHHHhh
Confidence 9999999998888887765544443
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=1.3e-11 Score=122.02 Aligned_cols=244 Identities=7% Similarity=0.060 Sum_probs=192.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-PWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
+...|+.+...+.+.|++++|++.|++..+.. +-+...|+.+..++...|+ +++|+..|++.++.. +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 35668888889999999999999999998753 2367889999999999996 999999999999864 44778999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-cCC
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC-RGK 264 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~ 264 (533)
.+|.+.|++++|+..|+++.+.... +...|..+..++.+.|++++|++.|+++.+.. +.+...|+.+..+|.+ .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999988655 78899999999999999999999999998865 5678899999999998 666
Q ss_pred hHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCC----
Q 009506 265 VSEA-----EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ--RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTP---- 333 (533)
Q Consensus 265 ~~~A-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---- 333 (533)
.++| ...|++..+.. +-+...|+.+...|.+.| ++++|++.+.++ +. ...+...+..+...+.+.+
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 47788777643 235678888888888877 588888888887 32 2234456677777776653
Q ss_pred -----h-HHHHHHHHHH-HhcCCChhHHHHHH
Q 009506 334 -----K-EELGKLVECV-EKSNSKLGYVVKLL 358 (533)
Q Consensus 334 -----~-~~a~~~~~~~-~~~~~~~~~~~~~l 358 (533)
. ++|.++++.+ .+.+|....++..+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~ 359 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYI 359 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 2 5666777776 66666665555433
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=5.8e-12 Score=117.07 Aligned_cols=224 Identities=8% Similarity=-0.049 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cC----HHHHH
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ--LS----VTLYN 217 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~----~~~~~ 217 (533)
..|..+...+...|++++|+..|++..+.. .+..++..+..+|...|++++|...+++..+.... ++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456677777778888888888888877765 66777777888888888888888888777664221 11 46677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 218 TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
.+...|...|++++|.+.|++.... .|+. ..+.+.|++++|.+.++++.... +.+...+..+...|...
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 7777777777777777777777664 3332 34555666777777777766532 12345566666677777
Q ss_pred CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHH
Q 009506 298 QRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELF 376 (533)
Q Consensus 298 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~ 376 (533)
|++++|...|++..+... .+..++..+...+...|+ ++|.+.++.+.+..|+
T Consensus 153 ~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-------------------------- 205 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-------------------------- 205 (258)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------------------------
T ss_pred cCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH--------------------------
Confidence 777777777777665431 234455555555555555 5555544444433332
Q ss_pred hhhccCccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 377 NSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 377 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
+...|..+...|.+.|++++|...+++..+.
T Consensus 206 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 206 -------FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3345666666777777777777777766544
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=4.2e-12 Score=117.01 Aligned_cols=213 Identities=10% Similarity=0.013 Sum_probs=165.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 220 (533)
.....|..+...+...|++++|+..|+++.+.. +.+..++..+...|.+.|++++|...|+++.+.... +..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence 345667788888999999999999999999754 457889999999999999999999999999887543 788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 009506 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 300 (533)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 300 (533)
..|...|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|.+.++++.+.. +.+...+..+...|.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999988765 5678889999999999999999999999988753 34678899999999999999
Q ss_pred hHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHH
Q 009506 301 DDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLL 359 (533)
Q Consensus 301 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~ 359 (533)
++|...|+++.+.. ..+..++..+...+...|+ ++|.+.++.+.+..|+.......+.
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 234 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHH
Confidence 99999999988764 2356788889999999999 9999999999988887766554443
No 45
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=1.1e-10 Score=121.27 Aligned_cols=318 Identities=13% Similarity=0.057 Sum_probs=206.8
Q ss_pred hHHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChhHHHH----
Q 009506 90 LKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTM-GRAKRPWQVKT---- 164 (533)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~-~~~g~~~~a~~---- 164 (533)
..++.++.++... .+-+...|..++..+.+.|++++|..+|+++... .|+...|...+... ...|+.++|.+
T Consensus 29 ~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~ 105 (530)
T 2ooe_A 29 DKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQ 105 (530)
T ss_dssp HHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHH
Confidence 3567777777653 3456778888888888889999999999888774 46777777776533 35577766654
Q ss_pred HHHHHHH-CCCCC-CHHHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----------
Q 009506 165 IYKEMTD-NGLSP-NWNTYASLLRAYGR---------ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC---------- 223 (533)
Q Consensus 165 ~~~~m~~-~g~~p-~~~~~~~ll~~~~~---------~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---------- 223 (533)
+|++.+. .|..| +...|...+....+ .|+++.|..+|++..+.........|.......
T Consensus 106 ~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~ 185 (530)
T 2ooe_A 106 AYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKK 185 (530)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHH
Confidence 6766654 35443 46677777776654 678889999999888732111123333221100
Q ss_pred ---HhcCCHHHH------------------------------------------------------------HHHHHHHH
Q 009506 224 ---ADVGYTDEA------------------------------------------------------------FEIFEDMK 240 (533)
Q Consensus 224 ---~~~g~~~~A------------------------------------------------------------~~~~~~m~ 240 (533)
.+.+++..| ..+|++..
T Consensus 186 ~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al 265 (530)
T 2ooe_A 186 MIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCL 265 (530)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHH
Confidence 011222333 33333333
Q ss_pred hCCCCCCCHHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 009506 241 SSENCQPDSWTFSSMITICSC-------RGKVS-------EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRA 306 (533)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 306 (533)
... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++++|..+
T Consensus 266 ~~~--p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 266 LVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHH--TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhC--CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 321 2345555566666654 67876 7888888876522233577888888888888888888888
Q ss_pred HHHhhhCCCCCC-H-HHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHH-HHHhhhhhccHHHHHHHHHhhhcc-
Q 009506 307 LNRLPELGITPD-D-RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKL-LLEEQDIEGDFKKEATELFNSISK- 381 (533)
Q Consensus 307 ~~~m~~~g~~p~-~-~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~~a~~~~~~~~~- 381 (533)
|+++.+. .|+ . ..|..+...+.+.|+ ++|.++++...+..+........ ....+...|+. ++|..+|++...
T Consensus 344 ~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~-~~A~~~~e~al~~ 420 (530)
T 2ooe_A 344 YNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK-SVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCH-HHHHHHHHHHHHH
T ss_pred HHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHH
Confidence 8888874 343 2 467777777777777 88888888888766654333211 11122345665 888888886532
Q ss_pred -CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 382 -DVKKAYCNCLIDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 382 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
+.+...|..++..+.+.|+.++|..+|++....+
T Consensus 421 ~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 421 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 2356688888888888999999999999887764
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.47 E-value=2.8e-11 Score=119.57 Aligned_cols=246 Identities=11% Similarity=0.108 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 143 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY-GEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
...|+.+..++.+.|++++|++.|++.++.. +-+..+|+.+..+|.+.|+ +++|+..|++..+.... +...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4567778888899999999999999999864 4467899999999999997 99999999999998665 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCh
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGK-AQRT 300 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~ 300 (533)
++...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|...|+++.+.. +-+...|+.+..+|.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999875 5689999999999999999999999999998864 2468889999999998 6666
Q ss_pred hHH-----HHHHHHhhhCCCCC-CHHHHHHHHHHHhcCC--h-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhc-----
Q 009506 301 DDV-----VRALNRLPELGITP-DDRFCGCLLNVMTQTP--K-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG----- 366 (533)
Q Consensus 301 ~~a-----~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~--~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 366 (533)
++| +..|++..+.. | +...|..+...+...| + +++...+..+ +.+++....+..++..|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 887 47888887753 4 4557888888888888 4 7888888877 777877777788888887764
Q ss_pred ---cHHHHHHHHHhhh-c-cCcc-chhhHHHHHHHH
Q 009506 367 ---DFKKEATELFNSI-S-KDVK-KAYCNCLIDLCV 396 (533)
Q Consensus 367 ---~~~~~a~~~~~~~-~-~~~~-~~~~~~li~~~~ 396 (533)
+..++|.++|+++ . .+|. ...|..+...+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 3348899999988 3 3443 336666655544
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=3.5e-12 Score=119.94 Aligned_cols=186 Identities=8% Similarity=-0.063 Sum_probs=122.6
Q ss_pred HcCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 120 TAGNFDGCLNVYEEMKAIGVK---PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGED 196 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~g~~---pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 196 (533)
..|++++|+..|+++.+.... .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 456778888888887765321 135567777777778888888888888777653 3456777777777777888888
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 197 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 197 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
|...|++..+.... +..++..+...|.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88888777775433 5667777777777777777777777777664 3433344444445566677777777776655
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 277 EAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 277 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
... +++...+ .++..+...++.++|...+.+..+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc
Confidence 532 2233333 355556666666777777666654
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.46 E-value=4.4e-12 Score=119.27 Aligned_cols=223 Identities=8% Similarity=-0.073 Sum_probs=162.3
Q ss_pred chhhhhHHhhHHHHHhhcCC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 009506 85 PRASKLKEKSYDTRARNEKW---RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ 161 (533)
Q Consensus 85 ~~~~~~~~~~l~~~~~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~ 161 (533)
.......+...+..+.+... ..+..+|..+...|...|++++|+..|+++.+.. +.+..+|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34444567777777776542 1256778888888888899999999998887753 3367888888888888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
|++.|++..+.. +.+..++..+...|.+.|++++|...|+++.+.. |+.......+..+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999998888753 3457788888888888999999999998888764 3333444445555667888999988877666
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 242 SENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE---PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
.. +++...+. ++..+...++.++|.+.+.+..+.... .+...+..+...|.+.|++++|...|++..+..
T Consensus 173 ~~--~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 173 KS--DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cC--CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 43 34444443 677777788888888888876543210 014677778888888888888888888887653
No 49
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=3.2e-10 Score=117.79 Aligned_cols=317 Identities=12% Similarity=0.078 Sum_probs=224.8
Q ss_pred hHHhhHHHHHhhcCCCCCHHHHHHHHHHH-HHcCChHHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHHh-------
Q 009506 90 LKEKSYDTRARNEKWRIDPNAFSTLIKLY-GTAGNFDGCLN----VYEEMKA-IGVKP-NMITYNNLLDTMGR------- 155 (533)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~p-d~~~~~~li~~~~~------- 155 (533)
..++.++.+..... |++..|...+... ...|++++|.+ +|++... .|..| +...|...+....+
T Consensus 63 ~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~ 140 (530)
T 2ooe_A 63 DKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSY 140 (530)
T ss_dssp HHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSST
T ss_pred HHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccH
Confidence 35677888887654 6888888888644 45688877765 7777654 35443 56788888877655
Q ss_pred --cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-------------HhcCChH-------------------------
Q 009506 156 --AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY-------------GRARYGE------------------------- 195 (533)
Q Consensus 156 --~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-------------~~~g~~~------------------------- 195 (533)
.|++++|..+|++.++.........|....... .+.++++
T Consensus 141 ~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 141 AENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 688999999999998731111123333221100 0011122
Q ss_pred -----------------------------------HHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-------cCCHH---
Q 009506 196 -----------------------------------DTLSVYREMKEKGMQLSVTLYNTLLAMCAD-------VGYTD--- 230 (533)
Q Consensus 196 -----------------------------------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~--- 230 (533)
.+..+|++...... -+...|..+...+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 33344444444321 255666666666665 68876
Q ss_pred ----HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHH
Q 009506 231 ----EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVV 304 (533)
Q Consensus 231 ----~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~ 304 (533)
+|.++|++..+.- .+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.
T Consensus 300 ~~~~~A~~~~~~Al~~~-~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 300 LFSDEAANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHTTTT-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHH
Confidence 8999999988632 1456889999999999999999999999999884 454 358999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHH-HhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccC
Q 009506 305 RALNRLPELGITPDDRFCGCLLNV-MTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD 382 (533)
Q Consensus 305 ~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~ 382 (533)
.+|++..+..-. +...+...... +...|+ ++|.++++...+..|+...++..++..+.+.|+. ++|..+|++....
T Consensus 377 ~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~-~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 377 MIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNED-NNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCH-HHHHHHHHHHHHS
T ss_pred HHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCH-hhHHHHHHHHHhc
Confidence 999999875321 22233222222 234677 9999999999998898888888888888888987 9999999987532
Q ss_pred -c-c----chhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 383 -V-K----KAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 383 -~-~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
+ + ...|...+....+.|+.+.+..+++++.+.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 2 338989999999999999999999988654
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.42 E-value=2e-10 Score=108.14 Aligned_cols=228 Identities=14% Similarity=0.062 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYN 217 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~ 217 (533)
+..++..+...+...|++++|++.|++..+. -+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667777778888888888888888888873 355677778888888 888888888888887775 677777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 009506 218 TLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC----RGKVSEAEAMFNEMLEAGFEPNLFVLTS 289 (533)
Q Consensus 218 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 289 (533)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 78888888 888888888888877643 56777778888887 888888888888877754 5666777
Q ss_pred HHHHHHh----cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCChhHHHHHHHHhhhhh
Q 009506 290 LIQCYGK----AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIE 365 (533)
Q Consensus 290 li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 365 (533)
+...|.. .+++++|...|++..+.+ +...+..+...+.. .....
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~-----------------------------g~~~~ 199 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHH-----------------------------GEGAT 199 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH-----------------------------TCSSC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc-----------------------------CCCCC
Confidence 7777776 778888888888776654 33344444444433 00003
Q ss_pred ccHHHHHHHHHhhhccCccchhhHHHHHHHHh----cCCHHHHHHHHHHHHhcc
Q 009506 366 GDFKKEATELFNSISKDVKKAYCNCLIDLCVN----LNLLENACKLLELGLTLE 415 (533)
Q Consensus 366 g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 415 (533)
++. ++|...|++.....+...+..+...|.+ .++.++|.+.|++..+.|
T Consensus 200 ~~~-~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNF-KEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 444 5566666555443445566677777777 788888888888877665
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.40 E-value=2.1e-10 Score=107.56 Aligned_cols=228 Identities=11% Similarity=-0.023 Sum_probs=112.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHh
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD--SWTFSSMITICSC 261 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~ 261 (533)
....+...|++++|+..|++..+.... +...+..+...|...|++++|++.|++..+... .++ ...|..+...|..
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN-ATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-TTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHHHH
Confidence 334444455555555555554443222 233444444455555555555555555444211 111 2234555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH-HHHhcCChHHHHHH
Q 009506 262 RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLL-NVMTQTPKEELGKL 340 (533)
Q Consensus 262 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~a~~~ 340 (533)
.|++++|.+.|++..+.. +.+...+..+...|...|++++|...|++..+.. ..+...+..+. ..+.....++|.+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544432 1233445555555555555555555555554431 11233333333 33332211555555
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhhhcc---H------HHHHHHHHhhhccCc---cchhhHHHHHHHHhcCCHHHHHHHH
Q 009506 341 VECVEKSNSKLGYVVKLLLEEQDIEGD---F------KKEATELFNSISKDV---KKAYCNCLIDLCVNLNLLENACKLL 408 (533)
Q Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~g~---~------~~~a~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~ 408 (533)
++.+.+..|+.......++..+...|+ . .+++.++........ ....|..+...|.+.|++++|.+.+
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555544443444444444343 1 233333332222210 1247888999999999999999999
Q ss_pred HHHHhcc
Q 009506 409 ELGLTLE 415 (533)
Q Consensus 409 ~~m~~~g 415 (533)
++..+..
T Consensus 245 ~~al~~~ 251 (272)
T 3u4t_A 245 KNILALD 251 (272)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9987654
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.37 E-value=1.4e-11 Score=123.29 Aligned_cols=278 Identities=12% Similarity=-0.013 Sum_probs=190.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CC
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-M----ITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GL-SP 176 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p 176 (533)
....+..+...+.+.|++++|+..|+++.+.. |+ . ..|..+...|...|++++|+..|++..+. +- ..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 45556677788899999999999999998753 43 3 47888889999999999999999988753 11 22
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCcCHHHHHHHHHHHHhcCC-----------------HHHHHH
Q 009506 177 NWNTYASLLRAYGRARYGEDTLSVYREMKEK----G-MQLSVTLYNTLLAMCADVGY-----------------TDEAFE 234 (533)
Q Consensus 177 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~ 234 (533)
...++..+...|...|++++|...|++..+. + ......++..+...|...|+ +++|++
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 3467888888999999999999999887653 1 11235577888888999999 899998
Q ss_pred HHHHHHhC----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhHHHH
Q 009506 235 IFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPN----LFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 235 ~~~~m~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~ 305 (533)
.+++..+. +.......++..+...|...|++++|.+.|++..+..- ..+ ...+..+...|...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 88776442 11011345777888888899999999999888765210 112 2367777888888888888888
Q ss_pred HHHHhhhCCCC-CC----HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh
Q 009506 306 ALNRLPELGIT-PD----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 306 ~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
.|++..+.... .+ ..++..+...+...|+ ++|...++.... +....
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------------------~~~~~ 336 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA----------------------------IAQEL 336 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------HHHHC
Confidence 88876543110 01 1234444444444444 444443333221 11111
Q ss_pred cc-CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 380 SK-DVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 380 ~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
.. ......+..+...|.+.|++++|...+++..+.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 012337778999999999999999999987544
No 53
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=6.5e-10 Score=106.79 Aligned_cols=221 Identities=11% Similarity=0.077 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 125 DGCLNVYEEMKAIGVKPNMITYNNLLDTMG-------RAKRP-------WQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 125 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
++|+.+|++..... +-+...|..+...+. +.|++ ++|..+|++..+.--+-+...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68888999887642 346778888877775 35876 8999999999873123456789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-hcCChHHH
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS-CRGKVSEA 268 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A 268 (533)
.|++++|..+|++..+.... +.. +|..+...+.+.|++++|.++|++..+.. +.+...|........ ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999885332 333 78889999999999999999999988764 344455554433322 36999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCC--CHHHHHHHHHHHhcCCh-HHHHHHHHHH
Q 009506 269 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-ITP--DDRFCGCLLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 269 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~~~ll~~~~~~~~-~~a~~~~~~~ 344 (533)
.++|++..+.. +-+...|..++..+.+.|+.++|..+|++..+.. +.| ....|..++....+.|+ +++..+++.+
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987642 2367888889999999999999999999998863 455 35678888888888888 8888888887
Q ss_pred HhcCCC
Q 009506 345 EKSNSK 350 (533)
Q Consensus 345 ~~~~~~ 350 (533)
.+..|+
T Consensus 268 ~~~~p~ 273 (308)
T 2ond_A 268 FTAFRE 273 (308)
T ss_dssp HHHTTT
T ss_pred HHHccc
Confidence 777665
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=2.6e-10 Score=100.34 Aligned_cols=166 Identities=18% Similarity=0.153 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
++.+|..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|+..++...... +-+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56677778888888888888888888776642 2356677777777777788888877777776643 345566666677
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
.+...++++.+...+.+..+.... +...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHHHCCCHH
Confidence 777777777777777777665433 56667777777777777777777777766653 445667777777777777777
Q ss_pred HHHHHHHHHHH
Q 009506 267 EAEAMFNEMLE 277 (533)
Q Consensus 267 ~A~~~~~~m~~ 277 (533)
+|.+.|++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777777665
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=2.7e-11 Score=121.25 Aligned_cols=259 Identities=15% Similarity=0.042 Sum_probs=187.9
Q ss_pred HHhhHHHHHhhcCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChhH
Q 009506 91 KEKSYDTRARNEKWRIDP----NAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GV-KPNMITYNNLLDTMGRAKRPWQ 161 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~pd~~~~~~li~~~~~~g~~~~ 161 (533)
.+..++.++.+.... +. .+|..+...|...|++++|+..|++..+. +. .....+|..+...|...|++++
T Consensus 66 ~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 144 (411)
T 4a1s_A 66 AGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDE 144 (411)
T ss_dssp HHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHH
Confidence 456666666665322 33 57889999999999999999999998653 11 2234678888899999999999
Q ss_pred HHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHc----CCC-cCHH
Q 009506 162 VKTIYKEMTDN----G-LSPNWNTYASLLRAYGRARY-----------------GEDTLSVYREMKEK----GMQ-LSVT 214 (533)
Q Consensus 162 a~~~~~~m~~~----g-~~p~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~~m~~~----g~~-~~~~ 214 (533)
|+..|++..+. + ......++..+...|...|+ +++|++.+++..+. +.. ....
T Consensus 145 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (411)
T 4a1s_A 145 AAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR 224 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999988753 1 11234578888999999999 99999999887552 211 1345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC----CHH
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EP----NLF 285 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~ 285 (533)
++..+...|...|++++|++.|++..+...-..+ ...+..+...|...|++++|.+.|++..+..- .. ...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 304 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQ 304 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7888889999999999999999887653210112 34788999999999999999999998765310 01 156
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC
Q 009506 286 VLTSLIQCYGKAQRTDDVVRALNRLPEL----GITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSK 350 (533)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~ 350 (533)
++..+...|...|++++|...|++..+. +..+. ..++..+...+...|+ ++|.+.++...+....
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 305 SCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 7888899999999999999999998653 11111 2255556666666666 6666666665554443
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=4.4e-11 Score=114.42 Aligned_cols=242 Identities=12% Similarity=0.054 Sum_probs=170.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------C
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI-------GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN------G 173 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g 173 (533)
+..++..+...|...|++++|+.+|+++.+. .......++..+...+...|++++|+..|++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4667889999999999999999999998762 22334567888999999999999999999998753 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 009506 174 L-SPNWNTYASLLRAYGRARYGEDTLSVYREMKEK------GM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS--- 242 (533)
Q Consensus 174 ~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 242 (533)
- .....++..+...|...|++++|...|++..+. +. ......+..+...|...|++++|+++|++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 233568889999999999999999999988764 22 224567888899999999999999999988764
Q ss_pred ---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCC-------HHHHHHHHHHHHhcCChhHHHH
Q 009506 243 ---ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA-------GFEPN-------LFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 243 ---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~-------~~~~~~li~~~~~~g~~~~a~~ 305 (533)
+.......++..+...|...|++++|.+.|+++.+. ...+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 210224567889999999999999999999998752 11111 1223333334445556666666
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCC
Q 009506 306 ALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNS 349 (533)
Q Consensus 306 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~ 349 (533)
.+....... ..+..++..+..+|.+.|+ ++|.++++...+..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 666655421 1233477788888888888 888888887766543
No 57
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.33 E-value=1.3e-09 Score=119.45 Aligned_cols=255 Identities=15% Similarity=0.088 Sum_probs=144.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009506 120 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLS 199 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 199 (533)
..|++++|.++.++. -+..+|..+..++...|++++|++.|.+. -|...|..++.+|.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 445555555555543 12445555555555555555555555332 344455555555555555555555
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 200 VYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 200 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
.|...++.. ++....+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|...
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---- 1221 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 1221 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Confidence 555444432 12222223555555555554322221 1 233344444555555555555555555442
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC------------------------CCCCCHHHHHHHHHHHhcCCh-
Q 009506 280 FEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL------------------------GITPDDRFCGCLLNVMTQTPK- 334 (533)
Q Consensus 280 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------g~~p~~~~~~~ll~~~~~~~~- 334 (533)
..|..+..+|.+.|++++|.+.+++.... ++..+...+..++..|.+.|.
T Consensus 1222 -----~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1222 -----SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYF 1296 (1630)
T ss_pred -----hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCH
Confidence 24445555555555555555444433111 133455667788899999999
Q ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHhhhh--hccHHHHHHHHHhh-hccCc------cchhhHHHHHHHHhcCCHHHHH
Q 009506 335 EELGKLVECVEKSNSKLGYVVKLLLEEQDI--EGDFKKEATELFNS-ISKDV------KKAYCNCLIDLCVNLNLLENAC 405 (533)
Q Consensus 335 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~a~~~~~~-~~~~~------~~~~~~~li~~~~~~g~~~~A~ 405 (533)
+++..+++.....++....+.+-|+..|.+ .+++ .++.++|.+ +..++ +...|..++-.|.+.|+++.|.
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~pekl-mEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKM-REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHH-HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999888887776676666665554 4555 555555544 33222 3458999999999999999998
Q ss_pred H
Q 009506 406 K 406 (533)
Q Consensus 406 ~ 406 (533)
.
T Consensus 1376 ~ 1376 (1630)
T 1xi4_A 1376 I 1376 (1630)
T ss_pred H
Confidence 4
No 58
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=3.3e-10 Score=112.43 Aligned_cols=294 Identities=8% Similarity=-0.043 Sum_probs=207.2
Q ss_pred HHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHH--hcCChhHHH-----------HHHHHHHHCCCCCCHHH-
Q 009506 119 GTAGNFDGCLNVYEEMKAI--GVKPN--MITYNNLLDTMG--RAKRPWQVK-----------TIYKEMTDNGLSPNWNT- 180 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~--g~~pd--~~~~~~li~~~~--~~g~~~~a~-----------~~~~~m~~~g~~p~~~~- 180 (533)
.+.+++++|..+++++.+. .++.| ...|-.++..-. -.+..+.+. +.++.+.... .+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchhH
Confidence 5789999999999998653 23233 344444443211 223333344 6666665421 11111
Q ss_pred -----HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---
Q 009506 181 -----YASLLRAYGRARYGEDTLSVYREMKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP--- 247 (533)
Q Consensus 181 -----~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--- 247 (533)
+......+...|++++|...|++..+. +-.+ ...+|..+...|...|++++|.+.+++..+...-.+
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 222556677899999999999998764 2122 346788899999999999999999988765311011
Q ss_pred --CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhC----CCC
Q 009506 248 --DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPN----LFVLTSLIQCYGKAQRTDDVVRALNRLPEL----GIT 316 (533)
Q Consensus 248 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~ 316 (533)
...+++.+...|...|++++|.+.|++..+..- .++ ..++..+...|...|++++|...|++..+. +..
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 246788999999999999999999998765210 122 247888999999999999999999998762 332
Q ss_pred C-CHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc-----CCChhHHHHHHHHhhhhhcc--HHHHHHHHHhhhccCcc-ch
Q 009506 317 P-DDRFCGCLLNVMTQTPK-EELGKLVECVEKS-----NSKLGYVVKLLLEEQDIEGD--FKKEATELFNSISKDVK-KA 386 (533)
Q Consensus 317 p-~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~--~~~~a~~~~~~~~~~~~-~~ 386 (533)
| ...++..+...+...|+ ++|...++..... ++........+...+...|+ ..++|+.++++....++ ..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 340 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLED 340 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHH
Confidence 3 34578889999999999 9999988876654 22222334667788887776 23889999988865333 33
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 387 YCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 387 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
.+..+...|.+.|++++|...+++..+.
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7788999999999999999999988643
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.32 E-value=5.2e-11 Score=118.63 Aligned_cols=295 Identities=12% Similarity=-0.007 Sum_probs=209.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSP 176 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p 176 (533)
......+..+...+.+.|++++|+..|++..+... .+ ...|..+...+...|++++|...|++..+. +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 34566777888899999999999999999987532 23 357888899999999999999999987542 2112
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCC--------------------HH
Q 009506 177 -NWNTYASLLRAYGRARYGEDTLSVYREMKEK----GMQ-LSVTLYNTLLAMCADVGY--------------------TD 230 (533)
Q Consensus 177 -~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~--------------------~~ 230 (533)
...++..+...|...|++++|...+++..+. +-. ....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2457888899999999999999999887653 111 114578888899999999 99
Q ss_pred HHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCChh
Q 009506 231 EAFEIFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEPN----LFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 231 ~A~~~~~~m~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~~~~~li~~~~~~g~~~ 301 (533)
+|.+.+++.... +.......++..+...|...|++++|.+.+++..+.. -.++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999998775432 2101134578889999999999999999999876521 0122 347888889999999999
Q ss_pred HHHHHHHHhhhC----CCCCC-HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCh------hHHHHHHHHhhhhhccHH
Q 009506 302 DVVRALNRLPEL----GITPD-DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL------GYVVKLLLEEQDIEGDFK 369 (533)
Q Consensus 302 ~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~ 369 (533)
+|...+++..+. +..+. ..++..+...+...|+ ++|...++......+.. ......++..|...|+.
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~- 323 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH- 323 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH-
Confidence 999999987643 11111 3467778888888888 88888887765432221 22335667777777776
Q ss_pred HHHHHHHhhhcc----Cc----cchhhHHHHHHHHhcCCH
Q 009506 370 KEATELFNSISK----DV----KKAYCNCLIDLCVNLNLL 401 (533)
Q Consensus 370 ~~a~~~~~~~~~----~~----~~~~~~~li~~~~~~g~~ 401 (533)
++|...|++... .. ...++..+...|...|+.
T Consensus 324 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 324 DQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 777777766432 11 122455555566555554
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.32 E-value=4.5e-11 Score=119.09 Aligned_cols=273 Identities=15% Similarity=0.052 Sum_probs=206.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc
Q 009506 140 KPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN----WNTYASLLRAYGRARYGEDTLSVYREMKEK----GMQL 211 (533)
Q Consensus 140 ~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~ 211 (533)
......+......+...|++++|+..|++..+.+ +.+ ..++..+...|...|++++|...+++..+. +-.+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 3556677778888999999999999999999863 223 357888999999999999999999987543 2222
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCC--------------------hH
Q 009506 212 -SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGK--------------------VS 266 (533)
Q Consensus 212 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~--------------------~~ 266 (533)
...++..+...|...|++++|.+.+++......-..+ ..++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 2567888889999999999999999877653100112 4578899999999999 99
Q ss_pred HHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHhcCCh-H
Q 009506 267 EAEAMFNEMLEA----GFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI-TPD----DRFCGCLLNVMTQTPK-E 335 (533)
Q Consensus 267 ~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~-~ 335 (533)
+|.+.+.+..+. +..+ ...++..+...|...|++++|...|++..+... .++ ..++..+...+...|+ +
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999886542 2111 245688888999999999999999999765311 122 2277788888999999 9
Q ss_pred HHHHHHHHHHhcCCCh------hHHHHHHHHhhhhhccHHHHHHHHHhhhcc----Ccc----chhhHHHHHHHHhcCCH
Q 009506 336 ELGKLVECVEKSNSKL------GYVVKLLLEEQDIEGDFKKEATELFNSISK----DVK----KAYCNCLIDLCVNLNLL 401 (533)
Q Consensus 336 ~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~----~~~----~~~~~~li~~~~~~g~~ 401 (533)
+|...++......+.. ......++..+...|+. ++|...|++... ..+ ..++..+...|.+.|++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY-EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 9999888766533222 23336778888888987 899988887542 111 34788899999999999
Q ss_pred HHHHHHHHHHHhc
Q 009506 402 ENACKLLELGLTL 414 (533)
Q Consensus 402 ~~A~~l~~~m~~~ 414 (533)
++|...+++..+.
T Consensus 324 ~~A~~~~~~al~~ 336 (406)
T 3sf4_A 324 DQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987644
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=5e-10 Score=98.48 Aligned_cols=167 Identities=12% Similarity=0.092 Sum_probs=141.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
+..+|..+...|.+.|++++|++.|++.++.. +-+..++..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 66788899999999999999999999988764 446788889999999999999999999988877554 6777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 301 (533)
.+...++++.|.+.+++..... +.+...+..+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 8899999999999998887764 5578888889999999999999999999887753 345778888999999999999
Q ss_pred HHHHHHHHhhhC
Q 009506 302 DVVRALNRLPEL 313 (533)
Q Consensus 302 ~a~~~~~~m~~~ 313 (533)
+|...|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 999999988764
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.31 E-value=5.2e-11 Score=114.88 Aligned_cols=277 Identities=11% Similarity=0.029 Sum_probs=181.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSP-NWN 179 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ 179 (533)
..+......+.+.|++++|+..|+++.+... .+ ...|..+...+...|++++|++.+++..+. +-.+ ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3455566778889999999999999887531 23 367788888899999999999999887642 1111 245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 009506 180 TYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LS----VTLYNTLLAMCADVGY--------------------TDEAFE 234 (533)
Q Consensus 180 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~ 234 (533)
++..+...|...|++++|...+++..+.... .+ ..++..+...|...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 7778888888999999999988887653110 12 3477778888888888 888888
Q ss_pred HHHHHHhC----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhHHHH
Q 009506 235 IFEDMKSS----ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPN----LFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 235 ~~~~m~~~----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~ 305 (533)
.+++.... +........+..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776432 11011245677788888888888888888888654210 011 2367777778888888888888
Q ss_pred HHHHhhhCCCC-CC----HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh
Q 009506 306 ALNRLPELGIT-PD----DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI 379 (533)
Q Consensus 306 ~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~ 379 (533)
.+++..+.... .+ ..++..+...+...|+ ++|...++.... ++...
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~----------------------------~~~~~ 296 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA----------------------------IAQEL 296 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------HHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH----------------------------HHHhc
Confidence 88876542100 11 1233334444444444 444443332211 11111
Q ss_pred ccC-ccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 380 SKD-VKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 380 ~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
... ....++..+...|.+.|++++|...+++..+.
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 110 11336778899999999999999999988654
No 63
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.30 E-value=8.6e-10 Score=112.49 Aligned_cols=291 Identities=12% Similarity=-0.008 Sum_probs=194.5
Q ss_pred CHHHHHHHHHHHHHc--CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 009506 107 DPNAFSTLIKLYGTA--GNFDGCLNVYEEMKAIGVKPN-MITYNNLLDT---MGRAKRPWQVKTIYKEMTDNGLSPNWNT 180 (533)
Q Consensus 107 ~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 180 (533)
.+.+|+.+..++.+. +++++|++.|++..+. .|+ ...+..+..+ +...++.++|++.|++..+.. +.+..+
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~ 211 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYL 211 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHH
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHH
Confidence 467777777777665 4799999999999874 354 4455555444 445678889999999888754 345666
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009506 181 YASLLRAYGR----ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 256 (533)
Q Consensus 181 ~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 256 (533)
+..+...+.. .+++++|.+++++..+.... +..++..+...|...|++++|.+.|++..+.. +.+..++..+.
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg 288 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHH
Confidence 7666655554 46788999999998887544 77889999999999999999999999988764 45677777776
Q ss_pred HHHHhc-------------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 009506 257 TICSCR-------------------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 317 (533)
Q Consensus 257 ~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 317 (533)
..|... +.++.|...|++..+.. +.+...+..+...|...|++++|...|++..+....+
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 665432 23567777787776643 2345667888999999999999999999998765443
Q ss_pred CHH--HHHHHHH-HHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhh-cc-CccchhhHHH
Q 009506 318 DDR--FCGCLLN-VMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSI-SK-DVKKAYCNCL 391 (533)
Q Consensus 318 ~~~--~~~~ll~-~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~-~~-~~~~~~~~~l 391 (533)
... .+..+.. ...+.|+ ++|...+....+..|+.......+ ..+..++++. .. +.+..+|+.|
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~-----------~~l~~~~~~~l~~~p~~~~~~~~L 436 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK-----------DKLQKIAKMRLSKNGADSEALHVL 436 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH-----------HHHHHHHHHHHHHCC-CTTHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-----------HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 322 2222222 2335666 899999999988888754332211 2333333332 22 3356799999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcc
Q 009506 392 IDLCVNLNLLENACKLLELGLTLE 415 (533)
Q Consensus 392 i~~~~~~g~~~~A~~l~~~m~~~g 415 (533)
...|...|++++|++.|++.++.+
T Consensus 437 G~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 437 AFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHCC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999988765
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=1.9e-09 Score=103.46 Aligned_cols=217 Identities=15% Similarity=0.134 Sum_probs=175.4
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGT-------AGNF-------DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRA 156 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~ 156 (533)
++..++.+.... ..-++..|..++..+.. .|++ ++|+.+|++..+.-.+-+...|..+...+.+.
T Consensus 34 ~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 455666666653 24578888888888763 5886 99999999998731233567899999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH-hcCCHHHHH
Q 009506 157 KRPWQVKTIYKEMTDNGLSPN-WN-TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA-DVGYTDEAF 233 (533)
Q Consensus 157 g~~~~a~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~ 233 (533)
|++++|.++|++..+. .|+ .. +|..+...+.+.|++++|..+|++..+.... +...|........ ..|++++|.
T Consensus 113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999984 454 33 8999999999999999999999999987543 4555554443322 379999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 234 EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG-FEP--NLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
++|++..+.. +.+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.+.|..+++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999988754 4578899999999999999999999999998863 455 4678999999999999999999999998
Q ss_pred hhC
Q 009506 311 PEL 313 (533)
Q Consensus 311 ~~~ 313 (533)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.28 E-value=8e-11 Score=113.60 Aligned_cols=221 Identities=13% Similarity=0.021 Sum_probs=166.5
Q ss_pred HHhhHHHHHhhcCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhH
Q 009506 91 KEKSYDTRARNEKWRID----PNAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GVKP-NMITYNNLLDTMGRAKRPWQ 161 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~~~~~li~~~~~~g~~~~ 161 (533)
.+..++.++.+.... + ...|..+...|...|++++|++.|++..+. +..+ ...++..+...+...|++++
T Consensus 23 ~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 101 (338)
T 3ro2_A 23 AGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 101 (338)
T ss_dssp HHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHH
Confidence 466677777765322 3 467889999999999999999999987542 1111 25678888899999999999
Q ss_pred HHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCC-c
Q 009506 162 VKTIYKEMTDNGL-SPN----WNTYASLLRAYGRARY--------------------GEDTLSVYREMKEK----GMQ-L 211 (533)
Q Consensus 162 a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~m~~~----g~~-~ 211 (533)
|...+++..+..- .++ ..++..+...|...|+ +++|.+.+++..+. +.. .
T Consensus 102 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~ 181 (338)
T 3ro2_A 102 AIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAA 181 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 9999998764210 122 3478888999999999 99999999876542 211 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC---
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP----DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF-EPN--- 283 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--- 283 (533)
...++..+...|...|++++|.+.+++..+...-.+ ...++..+...|...|++++|.+.+++..+..- ..+
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 261 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhH
Confidence 245788888999999999999999988764310011 234788899999999999999999998765210 112
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 284 -LFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 284 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
..++..+...|...|++++|...+++..+
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 262 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56778888999999999999999998765
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=2.9e-11 Score=115.65 Aligned_cols=246 Identities=14% Similarity=0.102 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDN-------GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK------G 208 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g 208 (533)
+..++..+...+...|++++|+.+|+++.+. .......++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888999999999999999999999863 22334577888999999999999999999988764 2
Q ss_pred C-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---
Q 009506 209 M-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS------ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA--- 278 (533)
Q Consensus 209 ~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 278 (533)
- .....++..+...|...|++++|.+.|++..+. +........+..+...|...|++++|.++|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 224677888999999999999999999887764 210224667888999999999999999999998763
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-------CCCCHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 009506 279 ---GFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-------ITPDDRFCGCLLNVMTQTPKEELGKLVECVEKS 347 (533)
Q Consensus 279 ---g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-------~~p~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~ 347 (533)
+..| ...++..+...|...|++++|..+|+++.+.. ..+...........+...
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 250 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREEC--------------- 250 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh---------------
Confidence 2122 24578888999999999999999999987531 111111111111111111
Q ss_pred CCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc--CccchhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 348 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK--DVKKAYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
...+...+.. .++...++.... .....+|..+..+|.+.|++++|.+.|++..+.
T Consensus 251 -----------~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 251 -----------KGKQKDGTSF-GEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------------------CCS-CCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----------cCchhhHHHH-HHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1111111222 334444444432 123457888999999999999999999987653
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.26 E-value=6e-10 Score=113.88 Aligned_cols=214 Identities=7% Similarity=-0.072 Sum_probs=125.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009506 159 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG-EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFE 237 (533)
Q Consensus 159 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (533)
+++++..+++..... +.+...+..+...|...|++ ++|++.|++..+.... +...|..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444555444322 23555666666666666666 6666666666655332 45566666666666666666666666
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCh
Q 009506 238 DMKSSENCQPDSWTFSSMITICSCR---------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA--------QRT 300 (533)
Q Consensus 238 ~m~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~ 300 (533)
+..+. .|+...+..+...|... |++++|.+.|++..+.. +-+...|..+..+|... |++
T Consensus 162 ~al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 66653 34456666666666666 66666666666665532 22355666666666665 666
Q ss_pred hHHHHHHHHhhhCCCC--CCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHh
Q 009506 301 DDVVRALNRLPELGIT--PDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFN 377 (533)
Q Consensus 301 ~~a~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~ 377 (533)
++|+..|++..+.... -+...+..+..++...|+ ++|.+.++...+..|+.......+...+...|+. ++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~-~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL-TSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH-HHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 6666666666554210 245566666666666666 6666666666666666655555666666666654 66666555
Q ss_pred hh
Q 009506 378 SI 379 (533)
Q Consensus 378 ~~ 379 (533)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 44
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.26 E-value=3.8e-10 Score=115.36 Aligned_cols=212 Identities=5% Similarity=-0.058 Sum_probs=151.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009506 123 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP-WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 201 (533)
Q Consensus 123 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 201 (533)
.+++++..+++..... +.+...|..+..++...|++ ++|++.|++..+.. +-+..+|..+...|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4667777777665532 23667777777778888888 88888888877653 334677788888888888888888888
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc--------CC
Q 009506 202 REMKEKGMQLSVTLYNTLLAMCADV---------GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR--------GK 264 (533)
Q Consensus 202 ~~m~~~g~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~ 264 (533)
++..+.. |+...+..+...|... |++++|++.|++..+.. +.+...|..+..+|... |+
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccch
Confidence 8877664 4567777777777777 88888888888777654 45677777787787777 77
Q ss_pred hHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHH
Q 009506 265 VSEAEAMFNEMLEAGFE---PNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKL 340 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~ 340 (533)
+++|.+.|++..+.. + -+...|..+..+|...|++++|.+.|++..+..- -+...+..+..++...|+ ++|.+.
T Consensus 237 ~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888877642 1 2677777888888888888888888888766531 134466666677776666 666654
Q ss_pred HH
Q 009506 341 VE 342 (533)
Q Consensus 341 ~~ 342 (533)
+.
T Consensus 315 ~~ 316 (474)
T 4abn_A 315 KG 316 (474)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.25 E-value=7.7e-10 Score=96.68 Aligned_cols=164 Identities=12% Similarity=0.036 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 188 (533)
..|..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456667777777888888888887776532 2356677777777777777777777777777643 34566677777777
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
...|++++|.+.++++.+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776665332 55666666667777777777777776666543 34566666666667777777777
Q ss_pred HHHHHHHHH
Q 009506 269 EAMFNEMLE 277 (533)
Q Consensus 269 ~~~~~~m~~ 277 (533)
.+.+++..+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666554
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=1.4e-09 Score=107.75 Aligned_cols=308 Identities=8% Similarity=-0.048 Sum_probs=211.7
Q ss_pred CCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHC--CCC--CCHHHHHHHHHHH--HhcCChhHHH---------HHHH
Q 009506 105 RIDPNAFSTLIKLY--GTAGNFDGCLNVYEEMKAI--GVK--PNMITYNNLLDTM--GRAKRPWQVK---------TIYK 167 (533)
Q Consensus 105 ~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~--pd~~~~~~li~~~--~~~g~~~~a~---------~~~~ 167 (533)
.|+..+-+.|-..| .+.+++++|.++++++... .++ .+...|-.|+..- .-.+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 45566666677777 7899999999999998653 222 2344445554431 1112222222 5666
Q ss_pred HHHHCCCCCCH-H---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-c----CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009506 168 EMTDNGLSPNW-N---TYASLLRAYGRARYGEDTLSVYREMKEKGMQ-L----SVTLYNTLLAMCADVGYTDEAFEIFED 238 (533)
Q Consensus 168 ~m~~~g~~p~~-~---~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (533)
.+.......+. . .+-.....+...|++++|...|++..+.-.. + ...++..+...|...|++++|.+.+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 65432111111 1 1223344567889999999999998764111 1 256788888999999999999999987
Q ss_pred HHhCCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 239 MKSSENCQP-----DSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFEP-NLFVLTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 239 m~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (533)
..+...-.+ ...+++.+...|...|++++|.+.|++..+. +-.+ ...++..+..+|...|++++|...|+
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 654211011 2567889999999999999999999987652 1111 13567888899999999999999999
Q ss_pred Hhhh-----CCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc-----CCChhHHHHHHHHhhhhhcc--HHHHHHHH
Q 009506 309 RLPE-----LGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKS-----NSKLGYVVKLLLEEQDIEGD--FKKEATEL 375 (533)
Q Consensus 309 ~m~~-----~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~--~~~~a~~~ 375 (533)
+..+ .. .....++..+...+.+.|+ ++|...++..... ++........+...+...++ ..++|+.+
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9876 32 2225678888999999999 9999999988765 33333444666667766665 13888888
Q ss_pred HhhhccCcc-chhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 376 FNSISKDVK-KAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 376 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
+++....++ ...+..+...|.+.|++++|...|++..+
T Consensus 326 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888654332 23677899999999999999999998753
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=1.4e-09 Score=94.91 Aligned_cols=165 Identities=14% Similarity=0.080 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 223 (533)
..|..+...+...|++++|++.|+++.+.. +.+..++..+...|...|++++|...++++.+.... +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 456777788889999999999998887653 456788888999999999999999999998877433 677888888899
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 009506 224 ADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDV 303 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 303 (533)
...|++++|.+.|+++.... +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...|...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999887764 5678888888999999999999999999887753 34577888888899999999999
Q ss_pred HHHHHHhhhC
Q 009506 304 VRALNRLPEL 313 (533)
Q Consensus 304 ~~~~~~m~~~ 313 (533)
...+++..+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9998887653
No 72
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=2.5e-08 Score=98.30 Aligned_cols=234 Identities=7% Similarity=-0.058 Sum_probs=159.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCH----HHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI----TYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNW----NTY 181 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~----~~~ 181 (533)
+..+...+...|++++|+..+++.....-..+.. +++.+...+...|++++|.+.+++..+..- ..+. .++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556678999999999999987753222332 466677788899999999999998774210 1222 346
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCC--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C-CC-CHHH
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKEK----GMQ--L-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-C-QP-DSWT 251 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~-~p-~~~~ 251 (533)
..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|.+.+++...... . .+ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 67788889999999999999887653 222 2 345667788889999999999999988765321 0 11 2456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCChhHHHHHHHHhhhCCCCCC---HHHH
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLT----SLIQCYGKAQRTDDVVRALNRLPELGITPD---DRFC 322 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~ 322 (533)
|..+...+...|++++|...+++.....-.++ ..... ..+..+...|+.++|...+++..+....+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 78888999999999999999998765311111 11111 233457789999999999999876432211 2234
Q ss_pred HHHHHHHhcCCh-HHHHHHHHHH
Q 009506 323 GCLLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 323 ~~ll~~~~~~~~-~~a~~~~~~~ 344 (533)
..+...+...|+ ++|...++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a 279 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEEL 279 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566666666 6666655543
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.16 E-value=2.1e-09 Score=114.65 Aligned_cols=166 Identities=10% Similarity=0.132 Sum_probs=144.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
++..|+.|...|.+.|++++|++.|++..+.. +-+..+|+.|..+|.+.|++++|++.|++.++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46789999999999999999999999988742 2357889999999999999999999999998854 345789999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
+|.+.|++++|++.|++..+.... +...|+.+...|.+.|++++|++.|++..+.. +-+...|..+...|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999887554 78899999999999999999999999988764 456888999999999999999
Q ss_pred HHHHHHHHHHH
Q 009506 267 EAEAMFNEMLE 277 (533)
Q Consensus 267 ~A~~~~~~m~~ 277 (533)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888754
No 74
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.15 E-value=4.5e-08 Score=107.46 Aligned_cols=277 Identities=12% Similarity=0.071 Sum_probs=191.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
-++.+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+.|++++|++.|...++.. ++....+.++
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 1174 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHH
Confidence 35888999999999999999999999664 577889999999999999999999998777643 4444445588
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
.+|++.+++++..... + .++...|..+...|...|++++|..+|... ..|..+...|.+.|++
T Consensus 1175 faYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~ 1237 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEY 1237 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCH
Confidence 8888888887544332 2 235566667778888888888888888764 2577777777777777
Q ss_pred HHHHHHHHHHHH------------------------cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 009506 266 SEAEAMFNEMLE------------------------AGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 321 (533)
Q Consensus 266 ~~A~~~~~~m~~------------------------~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 321 (533)
++|.+.+++... .++..+...+..++..|.+.|.+++|+.+++...... .-....
T Consensus 1238 q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1238 QAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 777777655321 0122355667788899999999999999998776543 223347
Q ss_pred HHHHHHHHhcCCh---HHHHHHHHHHHhcCC-----ChhHHHHHHHHhhhhhccHHHHHHHH-------------Hhh-h
Q 009506 322 CGCLLNVMTQTPK---EELGKLVECVEKSNS-----KLGYVVKLLLEEQDIEGDFKKEATEL-------------FNS-I 379 (533)
Q Consensus 322 ~~~ll~~~~~~~~---~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~~a~~~-------------~~~-~ 379 (533)
|+.+..++++... .++.++|..-....+ .....+.-++..|.+.|++ +.|... |+. +
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~-dnA~~tm~~h~~~a~~~~~Fk~~i 1395 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY-DNAIITMMNHPTDAWKEGQFKDII 1395 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccH-HHHHHHHHhccHhhhhhHHHHHHh
Confidence 7778888887766 444444443222222 2223345566677777777 666522 211 1
Q ss_pred ccCccchhhHHHHHHHHhcC---------------CHHHHHHHHH
Q 009506 380 SKDVKKAYCNCLIDLCVNLN---------------LLENACKLLE 409 (533)
Q Consensus 380 ~~~~~~~~~~~li~~~~~~g---------------~~~~A~~l~~ 409 (533)
....+...|--.+..|...+ +.+++.++|.
T Consensus 1396 ~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1396 TKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred cccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 22345556767777777666 6777777666
No 75
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.14 E-value=5.8e-10 Score=104.78 Aligned_cols=221 Identities=11% Similarity=0.054 Sum_probs=131.6
Q ss_pred HHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhcCChhHHH
Q 009506 91 KEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI------GV-KPNMITYNNLLDTMGRAKRPWQVK 163 (533)
Q Consensus 91 ~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~pd~~~~~~li~~~~~~g~~~~a~ 163 (533)
.+..+...+..........++..+...|...|++++|+..|++..+. +- .....+|+.+...|...|++++|+
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 44555555444343445677888888888888888888888887653 11 123456777778888888888888
Q ss_pred HHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCc-CHHHHHHHHHHHHhcCCH
Q 009506 164 TIYKEMTDN------G-LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK------GMQL-SVTLYNTLLAMCADVGYT 229 (533)
Q Consensus 164 ~~~~~m~~~------g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~~-~~~~~~~li~~~~~~g~~ 229 (533)
+.|++..+. . .+....++..+...|...|++++|...|++..+. +-.| ...++..+...|...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 888877653 1 1223466777777888888888888888777654 1122 345677777778888888
Q ss_pred HHHHHHHHHHHhC------CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHh
Q 009506 230 DEAFEIFEDMKSS------ENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLE----AG--FEPNLFVLTSLIQCYGK 296 (533)
Q Consensus 230 ~~A~~~~~~m~~~------~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g--~~p~~~~~~~li~~~~~ 296 (533)
++|.+.|++..+. +...+ ....|..+...+...+....+..+ ..+.. .+ .+....++..+...|..
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 264 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSPTVNTTLRSLGALYRR 264 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 8888888776642 00012 222333333333333332222221 11111 01 11124456677777777
Q ss_pred cCChhHHHHHHHHhhh
Q 009506 297 AQRTDDVVRALNRLPE 312 (533)
Q Consensus 297 ~g~~~~a~~~~~~m~~ 312 (533)
.|++++|..+|++..+
T Consensus 265 ~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 265 QGKLEAAHTLEDCASR 280 (283)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888877777654
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.13 E-value=3.2e-09 Score=113.23 Aligned_cols=166 Identities=13% Similarity=0.090 Sum_probs=148.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
+...|+.|-.++.+.|++++|++.|++.++.. +-+..+|+.|..+|.+.|++++|++.|++..+.... +...|+.+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46789999999999999999999999999853 345789999999999999999999999999987654 6889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTD 301 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 301 (533)
.|.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|.+.|++..+.. +-+...|..+..+|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~--P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999988864 4578899999999999999999999999988853 235788999999999999999
Q ss_pred HHHHHHHHhhh
Q 009506 302 DVVRALNRLPE 312 (533)
Q Consensus 302 ~a~~~~~~m~~ 312 (533)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.13 E-value=1.2e-08 Score=92.96 Aligned_cols=201 Identities=13% Similarity=0.077 Sum_probs=155.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
.|+..|......|.+.|++++|+..|++..+....++...+..+..++...|++++|++.|++..+.. +-+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788899999999999999999999999886543688888889999999999999999999999864 33567899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CHHHHHHHH
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSV-------TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP--DSWTFSSMI 256 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~li 256 (533)
..|.+.|++++|+..|++..+.... +. ..|..+...+...|++++|++.|++..+.. +. +...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence 9999999999999999999887543 44 557888888999999999999999998753 33 457777888
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 009506 257 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320 (533)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 320 (533)
..|...| ..+++++...+ ..+...|..+.. ...+.+++|...|++..+.. |+..
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~--p~~~ 214 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS--PNRT 214 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC--CCCH
Confidence 8876544 34445544432 233444444432 34566899999999988753 5544
No 78
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.11 E-value=9.5e-09 Score=104.27 Aligned_cols=291 Identities=12% Similarity=0.022 Sum_probs=191.3
Q ss_pred CHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCH
Q 009506 107 DPNAFSTLIKLYGTAG-----NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPW---QVKTIYKEMTDNGLSPNW 178 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~~ 178 (533)
++..+..|...+...+ ++++|+..|++..+.|.. + .+..|...|...+..+ ++.+.+......| +.
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~ 141 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YP 141 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CT
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CH
Confidence 4555556666444444 667777777777775532 2 4555666665554433 3444444444444 23
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG---YTDEAFEIFEDMKSSENCQPDSWTFSSM 255 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p~~~~~~~l 255 (533)
..+..|...|...+.++++......+.+.-...+...+..|...|.+.| +.++|++.|++..+.| .++...+..|
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~L 219 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSV 219 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence 4555666666666655544444333332211223347788888888888 8899999999988887 5777777777
Q ss_pred HHHHHhc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 009506 256 ITICSCR----GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQC-Y--GKAQRTDDVVRALNRLPELGITPDDRFCGCLLNV 328 (533)
Q Consensus 256 i~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 328 (533)
...|... +++++|.+.|++.. . -+...+..|-.. | ...++.++|+.+|++..+.| +...+..|-..
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~ 292 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKL 292 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 7777665 78999999998876 3 355566666665 3 46889999999999988877 56666666666
Q ss_pred HhcC----Ch-HHHHHHHHHHHhcCCChhHHHHHHHHhhhh----hccHHHHHHHHHhhhccCccchhhHHHHHHHHh--
Q 009506 329 MTQT----PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDI----EGDFKKEATELFNSISKDVKKAYCNCLIDLCVN-- 397 (533)
Q Consensus 329 ~~~~----~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~-- 397 (533)
|... .+ ++|.++++... +........|+..|.. ..+. ++|...|++.-...+...+..|...|..
T Consensus 293 y~~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~-~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 293 YYEGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYP-QKALDHLLTAARNGQNSADFAIAQLFSQGK 368 (452)
T ss_dssp HHHCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCH-HHHHHHHHHHHTTTCTTHHHHHHHHHHSCT
T ss_pred HHcCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCH-HHHHHHHHHHHhhChHHHHHHHHHHHHhCC
Confidence 6632 14 88888888766 4444444566666554 2255 8899999888777777777778887775
Q ss_pred --cCCHHHHHHHHHHHHhccc
Q 009506 398 --LNLLENACKLLELGLTLEV 416 (533)
Q Consensus 398 --~g~~~~A~~l~~~m~~~g~ 416 (533)
..+.++|...|+...+.|.
T Consensus 369 g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 4578999999998887774
No 79
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.06 E-value=6.3e-09 Score=105.59 Aligned_cols=299 Identities=13% Similarity=0.047 Sum_probs=188.1
Q ss_pred hHHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChhH
Q 009506 90 LKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGNF---DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-----RPWQ 161 (533)
Q Consensus 90 ~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g-----~~~~ 161 (533)
..+..++.+..+.| ++..+..|...|...|+. ++|++.|++..+. +...+..|...+...+ ++++
T Consensus 20 ~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 20 VTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 34566666666655 344455666667667777 8888888888753 5555666666555554 6778
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----HHHHHH
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGE---DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY----TDEAFE 234 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~---~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----~~~A~~ 234 (533)
|++.|++..+.|. ++ .+..|...|...+..+ ++.+.+....+.| +...+..|...|...+. .+++..
T Consensus 93 A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~ 166 (452)
T 3e4b_A 93 AESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVER 166 (452)
T ss_dssp HHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHH
T ss_pred HHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHH
Confidence 9999988888763 22 5666777776655443 3455555555554 34456667777777774 445555
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChhHHHHHH
Q 009506 235 IFEDMKSSENCQPDSWTFSSMITICSCRG---KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA----QRTDDVVRAL 307 (533)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~ 307 (533)
+++.... + .|+ .+..|...|.+.| +.++|.+.|++..+.| .++...+..|...|... ++.++|+.+|
T Consensus 167 ~~~~a~~-~--~~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 167 ICKAALN-T--TDI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHTT-T--CTT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHc-C--CHH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 5554433 2 233 8888999999999 9999999999998877 35666656677777554 7999999999
Q ss_pred HHhhhCCCCCCHHHHHHHHHH-H--hcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhc-----cHHHHHHHHHhh
Q 009506 308 NRLPELGITPDDRFCGCLLNV-M--TQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG-----DFKKEATELFNS 378 (533)
Q Consensus 308 ~~m~~~g~~p~~~~~~~ll~~-~--~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~~a~~~~~~ 378 (533)
++.. .| +...+..|-.. + ...++ ++|.++++...+.+. ......|+..|. .| +. ++|...|++
T Consensus 241 ~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~-~G~g~~~d~-~~A~~~~~~ 312 (452)
T 3e4b_A 241 EKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQ--PRAELLLGKLYY-EGKWVPADA-KAAEAHFEK 312 (452)
T ss_dssp HHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHH-HCSSSCCCH-HHHHHHHHT
T ss_pred HHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHH-cCCCCCCCH-HHHHHHHHH
Confidence 9987 43 44455555555 3 34556 999999998887662 333355666665 34 65 999999999
Q ss_pred hccCccchhhHHHHHHHHh----cCCHHHHHHHHHHHHhccc
Q 009506 379 ISKDVKKAYCNCLIDLCVN----LNLLENACKLLELGLTLEV 416 (533)
Q Consensus 379 ~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 416 (533)
.. ..+...+..|...|.. ..+.++|...|++..+.|.
T Consensus 313 Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 313 AV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred Hh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 88 7777888888888877 3489999999999887764
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.04 E-value=2.9e-08 Score=90.34 Aligned_cols=208 Identities=9% Similarity=-0.028 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 220 (533)
.|...|......+...|++++|+..|++..+..-.++...+..+..+|.+.|++++|++.|++..+.... +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4667888899999999999999999999998653378888888999999999999999999999987554 678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 009506 221 AMCADVGYTDEAFEIFEDMKSSENCQPDS-------WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN---LFVLTSL 290 (533)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l 290 (533)
..|...|++++|++.|++..+.. +.+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999988754 3445 56888888999999999999999998774 355 4667777
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHh
Q 009506 291 IQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEE 361 (533)
Q Consensus 291 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~ 361 (533)
..+|...| ..+++++...+. .+...+..... ...+. ++|...++...+..|+.......+...
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 77775544 344555554432 23344433332 22344 889999999999999988776666443
No 81
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.03 E-value=1.9e-08 Score=99.62 Aligned_cols=227 Identities=8% Similarity=-0.004 Sum_probs=153.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCC----CCHHHHH
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGV-KPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDN--GLS----PNWNTYA 182 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~----p~~~~~~ 182 (533)
....+...|++++|+..|++..+... .+| ..+|..+...|...|++++|+..+++..+. ... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 55566788999999999999876310 122 357888888899999999999999887742 111 1135778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCCHHHH
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEK----GMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-----SENCQPDSWTF 252 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~~~~~ 252 (533)
.+...|...|++++|+..|++..+. +-. ....+++.+...|...|++++|++.|++..+ ... +....++
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~ 267 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL-PSLPQAY 267 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG-GGHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc-hhHHHHH
Confidence 8888899999999999888877653 111 1134777888888899999999998887765 221 2246678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhCCCCCCH-HHHHH
Q 009506 253 SSMITICSCRGKVSEAEAMFNEMLEA----GFEPNLFVLTSLIQCYGKAQR---TDDVVRALNRLPELGITPDD-RFCGC 324 (533)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~-~~~~~ 324 (533)
..+...|.+.|++++|...+++..+. +-+.....+..+...|...|+ +++|+.++++. +..++. ..+..
T Consensus 268 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 344 (383)
T 3ulq_A 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHH
Confidence 88888888999999999888886542 111122335566677777777 66666666655 222222 24455
Q ss_pred HHHHHhcCCh-HHHHHHHHHH
Q 009506 325 LLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 325 ll~~~~~~~~-~~a~~~~~~~ 344 (533)
+...+...|+ ++|...++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 5566666666 6666555543
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=4.1e-09 Score=98.85 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------C
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAI------G-VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN------G 173 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g-~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g 173 (533)
...+|..+...|...|++++|++.|++..+. . .+....+|..+...+...|++++|+..|++..+. +
T Consensus 84 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4667888999999999999999999988753 1 1223567888888999999999999999988764 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCc-CHHHHHHHHHHHHhcC------CHHHHHHHHHH
Q 009506 174 LSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEK-------GMQL-SVTLYNTLLAMCADVG------YTDEAFEIFED 238 (533)
Q Consensus 174 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------g~~~-~~~~~~~li~~~~~~g------~~~~A~~~~~~ 238 (533)
-.| ...++..+...|.+.|++++|...|++..+. ...+ ....|..+...+...+ .+..+...++.
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------C
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence 122 3467888899999999999999999988763 1111 2223333333333322 23333333333
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 239 MKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 239 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
..... +....++..+...|.+.|++++|.++|++..+
T Consensus 244 ~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 244 CKVDS--PTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCCCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCC--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22211 22456788889999999999999999988765
No 83
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=3.2e-08 Score=81.01 Aligned_cols=126 Identities=16% Similarity=0.209 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
|..+...|.+.|++++|+.+|+++.+.. +.+...|..+...+...|++++|...|+++.+.+ +.+...+..+...+.+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 4444455555555555555555544322 1234444444444444455555555554444332 2233344444444444
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 239 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 239 (533)
.|++++|.++++++.+.... +..++..+...+.+.|++++|.+.|+++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 44444444444444433211 2333333444444444444444444433
No 84
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.96 E-value=4.4e-08 Score=80.20 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=61.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 225 (533)
|..+...+...|++++|+++|+++.+.. +.+...+..+...+...|++++|..+|+++.+.+.. +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 4445555555555555555555554432 223444455555555555555555555555444322 34444444455555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 226 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
.|++++|.+.|+++.... +.+...+..+...|.+.|++++|.+.|+++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 555555555555444432 2234444444444455555555555444443
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.93 E-value=3.3e-08 Score=94.02 Aligned_cols=175 Identities=11% Similarity=0.098 Sum_probs=109.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHH
Q 009506 123 NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSPN-WNTYASLLRAYGRARYGEDT 197 (533)
Q Consensus 123 ~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a 197 (533)
++++|...|++. ...|...|++++|++.|++..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666655 23455667777777777666532 21111 35667777777777777777
Q ss_pred HHHHHHHHHc----CCCc-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCChHH
Q 009506 198 LSVYREMKEK----GMQL-SVTLYNTLLAMCADV-GYTDEAFEIFEDMKSSENCQPD----SWTFSSMITICSCRGKVSE 267 (533)
Q Consensus 198 ~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~ 267 (533)
+..|++..+. |-.. -..+|+.+...|... |++++|++.|++..+...-..+ ..+|..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7777766542 1110 134677777777775 8888888888776542100001 3467777888888888888
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 268 AEAMFNEMLEAGFEPNL------FVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 268 A~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
|...|++..+....... ..|..+..++...|++++|...|++..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 88888887764322111 1456667777788888888888888765
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.92 E-value=4.2e-08 Score=93.26 Aligned_cols=202 Identities=13% Similarity=0.045 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAI----GVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSP-NW 178 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~ 178 (533)
..|......|...|++++|+..|++..+. |-.++ ..+|+.+..+|.+.|++++|+..|++..+. |-.. -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 35777788899999999999999987652 21122 468899999999999999999999988752 2111 13
Q ss_pred HHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCc-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCH---
Q 009506 179 NTYASLLRAYGRA-RYGEDTLSVYREMKEKGMQL-S----VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDS--- 249 (533)
Q Consensus 179 ~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~--- 249 (533)
.+++.+...|... |++++|+..|++..+..... + ..+|+.+...|.+.|++++|++.|++..+...-.++.
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788899999996 99999999999887642110 1 4578889999999999999999999988754201121
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--hcCChhHHHHHHHHhhh
Q 009506 250 --WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL------FVLTSLIQCYG--KAQRTDDVVRALNRLPE 312 (533)
Q Consensus 250 --~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li~~~~--~~g~~~~a~~~~~~m~~ 312 (533)
..|..+..++...|++++|...|++..+. .|+. ..+..++.+|. ..+++++|+..|+++..
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 15778888999999999999999987652 2332 23445666664 45678888888877654
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.91 E-value=1.9e-07 Score=87.76 Aligned_cols=221 Identities=9% Similarity=-0.001 Sum_probs=145.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 192 (533)
-+.++|...|++.... .-.|....+..+.. |...+ ++..|++..+.+ .++..++..+..++...|
T Consensus 50 ~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g 114 (310)
T 3mv2_B 50 YKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIEELENLLKDK-QNSPYELYLLATAQAILG 114 (310)
T ss_dssp HHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3456677677665321 12344333333333 33322 667777777655 466666678888888889
Q ss_pred ChHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHH--Hh--c
Q 009506 193 YGEDTLSVYREMKEKGM-QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP-----DSWTFSSMITIC--SC--R 262 (533)
Q Consensus 193 ~~~~a~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-----~~~~~~~li~~~--~~--~ 262 (533)
++++|++++.+..+.|. .-+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+...|+.++ .. .
T Consensus 115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~ 191 (310)
T 3mv2_B 115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNK 191 (310)
T ss_dssp CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCC
Confidence 99999999888776654 226677778888889999999999999888774 45 355555555552 22 3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-----C---CC-CHHHHHHHHHHHhcCC
Q 009506 263 GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELG-----I---TP-DDRFCGCLLNVMTQTP 333 (533)
Q Consensus 263 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~---~p-~~~~~~~ll~~~~~~~ 333 (533)
+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.- - .| |..+...+|......|
T Consensus 192 ~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg 269 (310)
T 3mv2_B 192 ETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG 269 (310)
T ss_dssp STTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 3888999999998664 3554444455558888899999999888765421 0 13 3445545555555556
Q ss_pred hHHHHHHHHHHHhcCCChhHH
Q 009506 334 KEELGKLVECVEKSNSKLGYV 354 (533)
Q Consensus 334 ~~~a~~~~~~~~~~~~~~~~~ 354 (533)
+ ++.+++.++.+..|+...+
T Consensus 270 k-~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 270 L-DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp C-TTHHHHHHHHHTTCCCHHH
T ss_pred h-HHHHHHHHHHHhCCCChHH
Confidence 5 7778888888888887655
No 88
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.89 E-value=3.7e-07 Score=90.09 Aligned_cols=226 Identities=10% Similarity=-0.014 Sum_probs=148.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CC---CC-CHHHHH
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGV-KPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDN--GL---SP-NWNTYA 182 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~---~p-~~~~~~ 182 (533)
....+...|++++|+..|++..+... .+| ..++..+...|...|+++.|+..+++..+. .. .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44456778999999999988875311 123 356777888888899999998888887642 11 11 245677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCCHHHH
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEK----GMQ-LSVTLYNTLLAMCADVGYTDEAFEIFEDMKS-----SENCQPDSWTF 252 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~~~~~ 252 (533)
.+...|...|++++|.+.|++..+. +.. ....+++.+...|...|++++|++.|++... .. +....++
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~ 264 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--DLLPKVL 264 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--GGHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--hhHHHHH
Confidence 8888888889999988888876652 211 1235677788888888888888888877765 32 2336677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhCCCCCCH-HHHHH
Q 009506 253 SSMITICSCRGKVSEAEAMFNEMLEAG----FEPNLFVLTSLIQCYGKAQR---TDDVVRALNRLPELGITPDD-RFCGC 324 (533)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~~-~~~~~ 324 (533)
..+...|.+.|++++|...+++..+.. -......+..+...|...++ +++|+.++++. +..++. ..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 788888888888888888888876631 11123445555556666677 66666666652 222222 24445
Q ss_pred HHHHHhcCCh-HHHHHHHHHH
Q 009506 325 LLNVMTQTPK-EELGKLVECV 344 (533)
Q Consensus 325 ll~~~~~~~~-~~a~~~~~~~ 344 (533)
+...+...|+ ++|.+.++..
T Consensus 342 la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 5556666666 6666655543
No 89
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.84 E-value=4.8e-07 Score=88.94 Aligned_cols=266 Identities=15% Similarity=0.061 Sum_probs=178.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHHH
Q 009506 147 NNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN----TYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LS----VTLYN 217 (533)
Q Consensus 147 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~ 217 (533)
......+...|++++|...+++.....-..+.. +++.+...|...|++++|...+++..+.... .+ ..+++
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334455678899999999999988754222222 5667778888899999999999987653111 12 23456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CCHHH
Q 009506 218 TLLAMCADVGYTDEAFEIFEDMKSS----ENCQ--P-DSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE----PNLFV 286 (533)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~ 286 (533)
.+...+...|++++|.+.+++.... +. . | ....+..+...|...|++++|...+++..+..-. ....+
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHL-EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-TTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc-ccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 6778889999999999999887652 22 1 2 2456677888899999999999999998763211 12456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC--HHHHH----HHHHHHhcCCh-HHHHHHHHHHHhcCCCh----hHHH
Q 009506 287 LTSLIQCYGKAQRTDDVVRALNRLPELGITPD--DRFCG----CLLNVMTQTPK-EELGKLVECVEKSNSKL----GYVV 355 (533)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~----~ll~~~~~~~~-~~a~~~~~~~~~~~~~~----~~~~ 355 (533)
+..+...+...|++++|...+++..+..-.++ ..... ..+..+...|+ +++...++......+.. ....
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77888889999999999999998765321111 11111 22334567777 88888877766544321 1122
Q ss_pred HHHHHhhhhhccHHHHHHHHHhhhccC----c---cc-hhhHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 009506 356 KLLLEEQDIEGDFKKEATELFNSISKD----V---KK-AYCNCLIDLCVNLNLLENACKLLELGLTL 414 (533)
Q Consensus 356 ~~l~~~~~~~g~~~~~a~~~~~~~~~~----~---~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 414 (533)
..+...+...|+. ++|...++..... + +. ..+..+..+|...|+.++|...+++....
T Consensus 257 ~~la~~~~~~g~~-~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEF-EPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666667766 7777777665321 1 11 25566677777888888888888876654
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.79 E-value=2.3e-07 Score=86.35 Aligned_cols=169 Identities=8% Similarity=0.039 Sum_probs=111.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG--LSPNWN 179 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~ 179 (533)
.++..+-.+...+.+.|++++|+..|+++.+.. |+ ...+..+..++.+.|++++|+..|++..+.. -+....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 356677778888889999999999999998753 33 5678888889999999999999999998752 112245
Q ss_pred HHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCcCHHHH-----------------HHHHHHHHhcCCHHHHHH
Q 009506 180 TYASLLRAYGR--------ARYGEDTLSVYREMKEKGMQLSVTLY-----------------NTLLAMCADVGYTDEAFE 234 (533)
Q Consensus 180 ~~~~ll~~~~~--------~g~~~~a~~~~~~m~~~g~~~~~~~~-----------------~~li~~~~~~g~~~~A~~ 234 (533)
.+..+..+|.+ .|++++|+..|+++.+.... +.... ..+...|.+.|++++|+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 67777788888 89999999999988876432 22222 233445555566666666
Q ss_pred HHHHHHhCCCCCC-CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHH
Q 009506 235 IFEDMKSSENCQP-DSWTFSSMITICSCR----------GKVSEAEAMFNEMLE 277 (533)
Q Consensus 235 ~~~~m~~~~~~~p-~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~ 277 (533)
.|+++.+...-.+ ....+..+..+|... |++++|...|+++.+
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 6655554320000 123444455555443 555555555555544
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.78 E-value=3.5e-07 Score=82.05 Aligned_cols=183 Identities=12% Similarity=0.086 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM-ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
..+-.....+.+.|++++|+..|++..+. .|+. ..|.. ....... .......+.+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-----~~~~~~~--------------~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-----TNVDKNS--------------EISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-----HHSCTTS--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-----hhhcchh--------------hhhHHHHHHHHHH
Confidence 33444555666778888888888877663 2432 22222 0000000 0011223346667
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC--h
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK--V 265 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~ 265 (533)
|.+.|++++|+..|++..+.... +...|..+...|...|++++|++.|++..+.. +.+...|..+...|...|+ .
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHH
Confidence 77777777777777777766443 56677777777777777777777777776654 3456667777666655443 3
Q ss_pred HHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 009506 266 SEAEAMFNEMLEAGFEPNLF--VLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 321 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 321 (533)
+.+...++... .|+.. .+..+..++...|++++|...|++..+. .|+...
T Consensus 141 ~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 141 KKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 33444444432 23332 2333344555667777777777777653 455443
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.76 E-value=6e-07 Score=84.44 Aligned_cols=184 Identities=10% Similarity=-0.005 Sum_probs=132.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 127 CLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPNWNTYASLLRAYGRARYGEDTLSVYREMK 205 (533)
Q Consensus 127 A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 205 (533)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..|- .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 778888877654 45666667888888889999999999998876552 1356778888899999999999999999998
Q ss_pred HcCCCc-----CHHHHHHHHHH--HHh--cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 206 EKGMQL-----SVTLYNTLLAM--CAD--VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 206 ~~g~~~-----~~~~~~~li~~--~~~--~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
+. .| +..+...|..+ ... .+++.+|..+|+++... .|+..+-..++.++.+.|++++|++.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 76 34 24455555555 222 33899999999998764 3554455555668889999999999998765
Q ss_pred Hc-----CC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 009506 277 EA-----GF----EPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320 (533)
Q Consensus 277 ~~-----g~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 320 (533)
+. .. +-|..++..+|......|+ +|.+++.++.+.. |+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~--P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD--HEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT--CCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC--CCCh
Confidence 42 11 2356666566666666676 7888999988753 5554
No 93
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=1.2e-06 Score=78.83 Aligned_cols=176 Identities=11% Similarity=-0.005 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHH
Q 009506 126 GCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR----YGEDTLSVY 201 (533)
Q Consensus 126 ~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~ 201 (533)
+|++.|++..+. -+...+..|-..|...+++++|++.|++..+.| +...+..|-..|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 355556665554 255566666666666666666666666666654 45555556666655 4 666666666
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHH
Q 009506 202 REMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSENCQ-PDSWTFSSMITICSC----RGKVSEAEAMF 272 (533)
Q Consensus 202 ~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~ 272 (533)
++..+.| +...+..|...|.. .+++++|++.|++..+.+. . .+...+..|...|.. .+++++|.+.|
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE-SDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT-SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC-CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 6666554 45556666666655 5667777777776665441 0 125666666666666 66677777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc-C-----ChhHHHHHHHHhhhCC
Q 009506 273 NEMLEAGFEPNLFVLTSLIQCYGKA-Q-----RTDDVVRALNRLPELG 314 (533)
Q Consensus 273 ~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g 314 (533)
++..+. ..+...+..|-..|... | +.++|..+|++..+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 776654 12334555555555432 2 6667777776666655
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.74 E-value=5.9e-07 Score=80.54 Aligned_cols=136 Identities=9% Similarity=-0.010 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 225 (533)
++.+..++.+.|++++|+..|++..+.. +-+...+..+...|...|++++|+..|++..+.... +..+|..+...|..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 3446666677777777777777776643 335666777777777777777777777777766443 56666666666655
Q ss_pred cCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009506 226 VGY--TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 288 (533)
Q Consensus 226 ~g~--~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 288 (533)
.|+ .+.+...++.... ..|....+..+..++...|++++|...|++..+. .|+.....
T Consensus 135 ~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~ 194 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHH
T ss_pred HhHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 443 3344444444432 1222333444455556667777777777776653 46654433
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.72 E-value=5.6e-07 Score=83.72 Aligned_cols=102 Identities=12% Similarity=-0.076 Sum_probs=75.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC--cCHHH
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ--LSVTL 215 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~ 215 (533)
.+...+-.+...+.+.|++++|+..|+++.+.. +-+ ...+..+..+|.+.|++++|+..|++..+.... .....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355666677777888888999998888888753 223 567778888888888888888888888876331 12456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHhCC
Q 009506 216 YNTLLAMCAD--------VGYTDEAFEIFEDMKSSE 243 (533)
Q Consensus 216 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~~ 243 (533)
+..+..++.. .|++++|++.|+++.+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 6667777777 888888888888877653
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.72 E-value=1e-07 Score=101.86 Aligned_cols=173 Identities=9% Similarity=-0.043 Sum_probs=127.5
Q ss_pred HHcCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 119 GTAGNFDGCLNVYEEMK--------AIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~--------~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
...|++++|++.|++.. +. .+.+...|..+..++.+.|++++|++.|++..+.. +-+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67889999999999887 32 23356677788888888888888888888888753 3466788888888888
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEA 270 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (533)
.|++++|++.|++..+.... +...|..+..+|.+.|++++ ++.|++..+.. +.+...|..+..+|.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888876544 56777778888888888888 88888877654 4567778888888888888888888
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 009506 271 MFNEMLEAGFEPN-LFVLTSLIQCYGKAQR 299 (533)
Q Consensus 271 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 299 (533)
.|++..+. .|+ ...+..+..++...++
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 88776553 354 4556666666655443
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.69 E-value=1.3e-06 Score=79.34 Aligned_cols=185 Identities=12% Similarity=0.033 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-P-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW----NT 180 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~ 180 (533)
++..+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|+..|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4455666778888999999999999998874211 1 13567788889999999999999999998753 332 23
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHH---------
Q 009506 181 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWT--------- 251 (533)
Q Consensus 181 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~--------- 251 (533)
+..+..++.+.+.. .+ ..|..+-..+...|++++|.+.|+++.+.. +-+...
T Consensus 81 ~~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~ 141 (225)
T 2yhc_A 81 MYMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVF 141 (225)
T ss_dssp HHHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHH
Confidence 44444444332100 00 001111222233444555555555544432 111111
Q ss_pred --------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 252 --------FSSMITICSCRGKVSEAEAMFNEMLEAGFEPN----LFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 252 --------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
...+...|.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 142 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 142 LKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1355677888999999999999887742 44 2467788889999999999999998887654
No 98
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.69 E-value=1.6e-05 Score=75.31 Aligned_cols=220 Identities=9% Similarity=-0.011 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH----Hhc---CCHH
Q 009506 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR--YGEDTLSVYREMKEKGMQLSVTLYNTLLAMC----ADV---GYTD 230 (533)
Q Consensus 160 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---g~~~ 230 (533)
++|+++++.++... +-+...|+.--..+...+ +++++++.++.+.....+ +..+|+.--..+ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence 35555555555432 122334444444444444 555555555555554333 333444333333 233 4445
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 009506 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS--EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 231 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 308 (533)
+++++++.+.+.. +.+..+|+.-.-.+.+.|.++ ++.+.++++.+... -|...|+--...+.+.|+.
T Consensus 128 ~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~-------- 196 (306)
T 3dra_A 128 REFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHL-------- 196 (306)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGG--------
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccc--------
Confidence 5555555544433 334444444444444444444 44444444444321 2333343332222222220
Q ss_pred HhhhCCCCCCHHHHHHHHHHHhcCC-hHHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhcc-----C
Q 009506 309 RLPELGITPDDRFCGCLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISK-----D 382 (533)
Q Consensus 309 ~m~~~g~~p~~~~~~~ll~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~-----~ 382 (533)
.+ .. -+++.+.++.+...+|.....+..+...+.+.|...+++.++..++.. .
T Consensus 197 --------~~-------------~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (306)
T 3dra_A 197 --------AT-------------DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV 255 (306)
T ss_dssp --------CC-------------HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE
T ss_pred --------ch-------------hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC
Confidence 00 00 145556666666777777776655555555555433444455554432 2
Q ss_pred ccchhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 383 VKKAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 383 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
.+...+..+.+.|.+.|+.++|.++++.+.+
T Consensus 256 ~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 256 TSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 2445788889999999999999999998764
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.68 E-value=4e-07 Score=86.23 Aligned_cols=164 Identities=10% Similarity=0.067 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL- 185 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll- 185 (533)
+...+..+...+.+.|++++|+..|++..+.. +-+...+..+...+.+.|++++|+..|++.... .|+........
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 33444455555555555555555555554421 123445555555555555555555555554432 23332222111
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
..+.+.++.++|...|++..+.... +...+..+...|...|++++|++.|+++.+...-..+...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 1233444445555555555444322 444455555555555555555555555444320001134444555555555555
Q ss_pred HHHHHHHHH
Q 009506 266 SEAEAMFNE 274 (533)
Q Consensus 266 ~~A~~~~~~ 274 (533)
++|...|++
T Consensus 272 ~~a~~~~r~ 280 (287)
T 3qou_A 272 DALASXYRR 280 (287)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 555444444
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.68 E-value=5.8e-07 Score=93.95 Aligned_cols=152 Identities=7% Similarity=-0.042 Sum_probs=89.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 009506 122 GNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVY 201 (533)
Q Consensus 122 g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 201 (533)
|++++|++.|++..+.. +-+...|..+...+.+.|++++|++.|++..+.. +-+...+..+...|.+.|++++|.+.|
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56667777776665532 2245666666677777777777777777776643 334566667777777777777777777
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHc
Q 009506 202 REMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR---GKVSEAEAMFNEMLEA 278 (533)
Q Consensus 202 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 278 (533)
++..+.... +...|..+...|.+.|++++|.+.|++..+.. +.+...+..+...|... |++++|.+.+++..+.
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 776665433 56666677777777777777777777766543 34566666777777777 7777777777776654
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.67 E-value=1.1e-05 Score=76.46 Aligned_cols=232 Identities=8% Similarity=0.032 Sum_probs=173.3
Q ss_pred HHHHcCC-hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----
Q 009506 117 LYGTAGN-FDGCLNVYEEMKAIGVKP-NMITYNNLLDTMGRAK--RPWQVKTIYKEMTDNGLSPNWNTYASLLRAY---- 188 (533)
Q Consensus 117 ~~~~~g~-~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---- 188 (533)
+..+.|. .++|+++++.+... .| +...||.--..+...+ +++++++.++.+.... +-+..+|+.--..+
T Consensus 41 a~~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 41 ALMKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHH
Confidence 3344454 46899999999874 35 4566888888888888 9999999999999754 34556676554444
Q ss_pred Hhc---CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 189 GRA---RYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD--EAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 189 ~~~---g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
.+. +++++++.+++.+.+...+ +-.+|+.-.-.+.+.|.++ ++++.++++.+.. ..|...|+.-...+.+.+
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHSSG
T ss_pred HhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcc
Confidence 555 7899999999999998765 8899999988889999888 9999999999876 578889988877777777
Q ss_pred C------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHhhhCC--CCCCHHHHHHHHHHHhcCCh
Q 009506 264 K------VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD-VVRALNRLPELG--ITPDDRFCGCLLNVMTQTPK 334 (533)
Q Consensus 264 ~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~ 334 (533)
. ++++.+.++++.... +-|...|+-+-..+.+.|+... +..+..++.+.+ -..+...+..+...+.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 6 888999988887754 3578888888888888887544 555666665543 12345566667777776666
Q ss_pred -HHHHHHHHHHHh-cCCChhHHH
Q 009506 335 -EELGKLVECVEK-SNSKLGYVV 355 (533)
Q Consensus 335 -~~a~~~~~~~~~-~~~~~~~~~ 355 (533)
++|.++++.+.+ .+|....++
T Consensus 274 ~~~A~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 274 YNESRTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHHHhccChHHHHHH
Confidence 667777666664 455544444
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.67 E-value=6.6e-07 Score=84.68 Aligned_cols=166 Identities=7% Similarity=-0.048 Sum_probs=136.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH-H
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT-L 219 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-l 219 (533)
.+...+..+...+.+.|++++|+..|++..+.. +-+...+..+...|.+.|++++|..++++..... |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 455667778888999999999999999998764 4467889999999999999999999999987764 34443333 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcC
Q 009506 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFE-PNLFVLTSLIQCYGKAQ 298 (533)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g 298 (533)
...+...++.++|.+.|++..... +.+...+..+...|...|++++|...|.++.+..-. .+...+..++..|...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 334667788888999999988765 567899999999999999999999999999885411 12678999999999999
Q ss_pred ChhHHHHHHHHhh
Q 009506 299 RTDDVVRALNRLP 311 (533)
Q Consensus 299 ~~~~a~~~~~~m~ 311 (533)
+.++|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999999988754
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.67 E-value=2.4e-06 Score=77.54 Aligned_cols=186 Identities=11% Similarity=0.012 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH--HHHHHH
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SP-NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSV--TLYNTL 219 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~--~~~~~l 219 (533)
..+..+...+.+.|++++|+..|+++.+..- .| ....+..+..+|.+.|++++|+..|+++.+....-.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3445555666777777777777777775421 11 1345666677777777777777777777765332111 123333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHH-----------
Q 009506 220 LAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNL-FVL----------- 287 (533)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~----------- 287 (533)
..++.+.|.. .++ .|..+...+...|++++|...|+++.+.. |+. ..+
T Consensus 85 g~~~~~~~~~-----~~~-------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 85 GLTNMALDDS-----ALQ-------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHC--------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhhhhh-----hhh-------------hhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHH
Confidence 3333322210 111 12222334455788999999999988742 442 111
Q ss_pred ------HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH----HHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCh
Q 009506 288 ------TSLIQCYGKAQRTDDVVRALNRLPELGITPDD----RFCGCLLNVMTQTPK-EELGKLVECVEKSNSKL 351 (533)
Q Consensus 288 ------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~ 351 (533)
..+...|.+.|++++|...|+++.+.. |+. ..+..+..++.+.|+ ++|.+.++.+....|+.
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 345678899999999999999998753 332 467788999999999 99999999988877654
No 104
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.67 E-value=2.9e-05 Score=81.90 Aligned_cols=200 Identities=10% Similarity=0.014 Sum_probs=145.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------CCC
Q 009506 213 VTLYNTLLAMCADVGYTDEAF-EIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG---------FEP 282 (533)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------~~p 282 (533)
...|-..+..+...|+.++|. ++|++.... ++.+...|-..+...-+.|+++.|.++|+.+.+.. -.|
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 344444445555677878886 999888764 35677778888888999999999999999987631 013
Q ss_pred C------------HHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHhcC-Ch-HHHHHHHHHHHhc
Q 009506 283 N------------LFVLTSLIQCYGKAQRTDDVVRALNRLPEL-GITPDDRFCGCLLNVMTQT-PK-EELGKLVECVEKS 347 (533)
Q Consensus 283 ~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~-~~-~~a~~~~~~~~~~ 347 (533)
+ ...|...+....+.|..+.|..+|.+..+. +.. ....|......-.+. ++ +.|.++|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 2 346788888888889999999999998876 221 223333333223333 33 8999999998888
Q ss_pred CCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccC-c----cchhhHHHHHHHHhcCCHHHHHHHHHHHHhccc
Q 009506 348 NSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKD-V----KKAYCNCLIDLCVNLNLLENACKLLELGLTLEV 416 (533)
Q Consensus 348 ~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 416 (533)
.|+...++...+......|+. +.|..+|++.... + ....|...+..-.+.|+.+.+.++.+++.+.-.
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~-~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEE-SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred CCCchHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 777777776677766677876 9999999986542 2 345899999999999999999999999987653
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.66 E-value=6e-07 Score=93.87 Aligned_cols=154 Identities=7% Similarity=-0.058 Sum_probs=120.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009506 156 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 235 (533)
Q Consensus 156 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (533)
.|++++|++.|++..+.. +-+...+..+...|.+.|++++|.+.|++..+.... +...|..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988753 346789999999999999999999999999987544 688999999999999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChhHHHHHHHHhhh
Q 009506 236 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA---QRTDDVVRALNRLPE 312 (533)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~ 312 (533)
|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++... |+.++|.+.|++..+
T Consensus 80 ~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99988865 5578899999999999999999999999988753 24578888999999999 999999999999887
Q ss_pred CC
Q 009506 313 LG 314 (533)
Q Consensus 313 ~g 314 (533)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 64
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.65 E-value=4.6e-07 Score=78.81 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=103.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YG 189 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 189 (533)
+..+...+.+.|++++|+..|++..+.. +-+...+..+..++...|++++|+..|++..+.. |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3455667778888888888888765431 2356778888888888888888888888776543 344433322211 11
Q ss_pred hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 009506 190 RARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAE 269 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 269 (533)
+.+....|...|++..+.... +...+..+...+...|++++|.+.|+++.+...-..+...+..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222333466677776665433 5666777777777777777777777777664310112456667777777777777777
Q ss_pred HHHHHHH
Q 009506 270 AMFNEML 276 (533)
Q Consensus 270 ~~~~~m~ 276 (533)
..|++..
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.64 E-value=9.5e-07 Score=94.33 Aligned_cols=171 Identities=11% Similarity=-0.014 Sum_probs=138.6
Q ss_pred HhcCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009506 154 GRAKRPWQVKTIYKEMT--------DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225 (533)
Q Consensus 154 ~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 225 (533)
...|++++|++.|++.. +.. +.+...+..+..+|.+.|++++|++.|++..+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67899999999999988 332 445678888999999999999999999999887544 77889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009506 226 VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 226 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 305 (533)
.|++++|++.|++..+.. +.+...|..+..+|.+.|++++ .+.|++..+.. +-+...|..+..+|.+.|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999988764 4567888999999999999999 99999988754 2357788899999999999999999
Q ss_pred HHHHhhhCCCCCCH-HHHHHHHHHHhcC
Q 009506 306 ALNRLPELGITPDD-RFCGCLLNVMTQT 332 (533)
Q Consensus 306 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~ 332 (533)
.|++..+. .|+. ..+..+..++...
T Consensus 556 ~~~~al~l--~P~~~~a~~~~~~~~~~~ 581 (681)
T 2pzi_A 556 TLDEVPPT--SRHFTTARLTSAVTLLSG 581 (681)
T ss_dssp HHHTSCTT--STTHHHHHHHHHHHTC--
T ss_pred HHHhhccc--CcccHHHHHHHHHHHHcc
Confidence 99998764 4554 3555555555443
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.63 E-value=2.9e-07 Score=80.09 Aligned_cols=161 Identities=6% Similarity=0.005 Sum_probs=112.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HH
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM-CA 224 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~~ 224 (533)
+..+...+.+.|++++|+..|++..+.. +-+...+..+...|.+.|++++|+..|++..+... +...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 4455667778888888888888776542 34567888888888888899888888888766533 44333322211 12
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHH
Q 009506 225 DVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP-NLFVLTSLIQCYGKAQRTDDV 303 (533)
Q Consensus 225 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a 303 (533)
..+...+|++.|++..+.. +.+...+..+...+...|++++|...|+++.+..-.+ +...+..+...|...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN--PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2223334677787777653 3467888888888888888888888888887754221 255777888888888888888
Q ss_pred HHHHHHhh
Q 009506 304 VRALNRLP 311 (533)
Q Consensus 304 ~~~~~~m~ 311 (533)
...|++..
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.62 E-value=7.2e-06 Score=73.59 Aligned_cols=175 Identities=14% Similarity=0.045 Sum_probs=143.3
Q ss_pred hhHHHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHH
Q 009506 93 KSYDTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK----RPWQVKTIYKE 168 (533)
Q Consensus 93 ~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g----~~~~a~~~~~~ 168 (533)
...+....+.| ++..+..|-..|...+++++|++.|++..+.| +...+..|-..|.. + ++++|++.|++
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 34444555544 78889999999999999999999999998864 67788888888887 6 89999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 009506 169 MTDNGLSPNWNTYASLLRAYGR----ARYGEDTLSVYREMKEKGMQ-LSVTLYNTLLAMCAD----VGYTDEAFEIFEDM 239 (533)
Q Consensus 169 m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m 239 (533)
..+.| +...+..|-..|.. .+++++|++.|++..+.|.. -+...+..|-..|.. .+++++|++.|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 98875 67788888888887 88999999999999888642 126788888888888 88999999999999
Q ss_pred HhCCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcCC
Q 009506 240 KSSENCQPDSWTFSSMITICSCR-G-----KVSEAEAMFNEMLEAGF 280 (533)
Q Consensus 240 ~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~ 280 (533)
.+.+ .+...+..|..+|... | ++++|.+.|+...+.|.
T Consensus 156 ~~~~---~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSLS---RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHTS---CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcC---CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8752 3445677787788754 3 89999999999888763
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.57 E-value=6.9e-05 Score=76.41 Aligned_cols=307 Identities=8% Similarity=-0.003 Sum_probs=162.9
Q ss_pred hhHHhhHHHHHhhcCCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHH----hcCChhH
Q 009506 89 KLKEKSYDTRARNEKWRIDPNAFSTLIKLYGTAGN-FDGCLNVYEEMKAI-GVK-PNMITYNNLLDTMG----RAKRPWQ 161 (533)
Q Consensus 89 ~~~~~~l~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~-pd~~~~~~li~~~~----~~g~~~~ 161 (533)
..+++.|+.+.... .|++..|...+....+.++ .+....+|+..... |.. .+...|...+..+. ..++.+.
T Consensus 30 ~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 30 YRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp HHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 34567777777763 4688888888888877763 45577788876643 432 36677777776543 2456777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHH-------------hcCCh----------------------------------
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYG-------------RARYG---------------------------------- 194 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------------~~g~~---------------------------------- 194 (533)
+.++|++.+.....--...|......-. ..+.+
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 8888888876321111112211111000 00011
Q ss_pred --------HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 195 --------EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 195 --------~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
+.+..+|+++..... .+...|-..+.-+.+.|+.++|.++|++.... +.+...|. .|+...+.+
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~----~y~~~~e~~ 259 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL----YYGLVMDEE 259 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH----HHHHHTTCT
T ss_pred cCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH----HHHhhcchh
Confidence 123334444443321 23444444444455555555555555555543 11111111 111111111
Q ss_pred HHHHHHHHHHHcC---------CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHH--HHHHHHhcC
Q 009506 267 EAEAMFNEMLEAG---------FEP---NLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCG--CLLNVMTQT 332 (533)
Q Consensus 267 ~A~~~~~~m~~~g---------~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~ 332 (533)
+. ++.+.+.- ..+ ....|...+..+.+.+..+.|..+|++....+ .+...|. +.+......
T Consensus 260 ~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~~~ 334 (493)
T 2uy1_A 260 AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYATG 334 (493)
T ss_dssp HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHHHC
T ss_pred HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHHCC
Confidence 11 11111100 000 11334445555556677888888888882211 2333333 223322222
Q ss_pred ChHHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 333 PKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLELGL 412 (533)
Q Consensus 333 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 412 (533)
..+.|..+++...+..++...++...++.....|+. +.|..+|++... ....|...++.-...|+.+.+.++++++.
T Consensus 335 d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~-~~aR~l~er~~k--~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE-ENARALFKRLEK--TSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHSCC--BHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH--HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 237888888887776666555554456655666765 788888888743 45678888888888888888888888876
Q ss_pred h
Q 009506 413 T 413 (533)
Q Consensus 413 ~ 413 (533)
.
T Consensus 412 ~ 412 (493)
T 2uy1_A 412 D 412 (493)
T ss_dssp H
T ss_pred H
Confidence 4
No 111
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.57 E-value=1.7e-07 Score=79.28 Aligned_cols=84 Identities=8% Similarity=-0.066 Sum_probs=36.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 262 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (533)
.+...|.+.|++++|++.|++..+.... +..+|..+...|.+.|++++|+..|++..+.. +-+...|..+...|.+.
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~ 112 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELN--PTQKDLVLKIAELLCKN 112 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 3344444444444444444444443322 34444444444444444444444444444332 22344444444444444
Q ss_pred CChHHHH
Q 009506 263 GKVSEAE 269 (533)
Q Consensus 263 g~~~~A~ 269 (533)
|++++|.
T Consensus 113 ~~~~~aa 119 (150)
T 4ga2_A 113 DVTDGRA 119 (150)
T ss_dssp CSSSSHH
T ss_pred CChHHHH
Confidence 4444433
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.55 E-value=3.2e-07 Score=77.57 Aligned_cols=139 Identities=11% Similarity=0.018 Sum_probs=65.5
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 119 GTAGNFDGCLNVYEEMKAIGVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 197 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 197 (533)
...|++++|+..|+..... .| +...+-.+-..|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 3445555555555554321 11 12223344455555555555555555555432 23445555555555555555555
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 198 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI-FEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 198 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
+..|++..+.... +..+|..+...|.+.|++++|.+. +++..+.. +-+...|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~--P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF--PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhC
Confidence 5555555554332 444555555555555555444333 34444322 223444444444444433
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=5e-06 Score=74.31 Aligned_cols=130 Identities=12% Similarity=0.014 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 188 (533)
..+..+...+.+.|++++|+..|++.. .|+...|..+...+...|++++|++.|++..+.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345667778888899999999988773 5688888888899999999999999998888754 45677888888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCC--------------c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 009506 189 GRARYGEDTLSVYREMKEKGMQ--------------L-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE 243 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 243 (533)
.+.|++++|.+.|++..+.... | ....+..+...|.+.|++++|.+.|++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8999999999999888875322 1 23677778888888888888888888887653
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=4.1e-06 Score=74.84 Aligned_cols=128 Identities=7% Similarity=-0.039 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 224 (533)
.+..+...+...|++++|+..|++. +.|+..++..+...|.+.|++++|+..|++..+.... +...|..+...|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence 3556667788899999999999876 3578889999999999999999999999988877543 6788888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 009506 225 DVGYTDEAFEIFEDMKSSENCQPD----------------SWTFSSMITICSCRGKVSEAEAMFNEMLEAG 279 (533)
Q Consensus 225 ~~g~~~~A~~~~~~m~~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 279 (533)
..|++++|++.|++..+.. +.+ ...+..+...|.+.|++++|.+.|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL--RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT--TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhC--CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999998887743 222 3678888888999999999999998887743
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.55 E-value=2.1e-06 Score=82.04 Aligned_cols=162 Identities=7% Similarity=-0.050 Sum_probs=94.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHH
Q 009506 149 LLDTMGRAKRPWQVKTIYKEMTDN----GLSP-NWNTYASLLRAYGRARYGEDTLSVYREMKEK----GMQL-SVTLYNT 218 (533)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~ 218 (533)
....|...|++++|...|.+..+. |-.. -..+|+.+...|.+.|++++|+..|++..+. |-.. -..+++.
T Consensus 42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 121 (307)
T 2ifu_A 42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDR 121 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344566667777777777666532 1000 1245666677777777777777777665442 1111 1345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC--CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 009506 219 LLAMCADVGYTDEAFEIFEDMKSSENC--QP--DSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFEPN-LFVLTS 289 (533)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~m~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ 289 (533)
+...|.. |++++|++.|++......- .+ ...++..+...|.+.|++++|...|++..+. +..+. ...+..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 6666766 7777777777665432100 01 1355667777777777777777777776542 11111 124555
Q ss_pred HHHHHHhcCChhHHHHHHHHhh
Q 009506 290 LIQCYGKAQRTDDVVRALNRLP 311 (533)
Q Consensus 290 li~~~~~~g~~~~a~~~~~~m~ 311 (533)
+..++...|++++|...|++..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHh
Confidence 5566666677777777777765
No 116
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.54 E-value=1.4e-05 Score=84.18 Aligned_cols=232 Identities=9% Similarity=-0.011 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009506 125 DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVK-TIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYRE 203 (533)
Q Consensus 125 ~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 203 (533)
+.+..+|++.... ++-+...|-.....+.+.|+.++|. ++|++.... ++.+...|-..+...-+.|+++.|.++|+.
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4566788887764 3447778888888888889999996 999999864 455667788888888999999999999998
Q ss_pred HHHcCC---------Cc------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh
Q 009506 204 MKEKGM---------QL------------SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-ENCQPDSWTFSSMITICSC 261 (533)
Q Consensus 204 m~~~g~---------~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p~~~~~~~li~~~~~ 261 (533)
+.+... .| ...+|...+....+.|..+.|.++|++..+. +.+.+......+.+. .+
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~ 481 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--YH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--HT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--HH
Confidence 876410 12 1346888888888889999999999998875 322233333333333 33
Q ss_pred c-CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC--CHHHHHHHHHHHhcCCh-HHH
Q 009506 262 R-GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP--DDRFCGCLLNVMTQTPK-EEL 337 (533)
Q Consensus 262 ~-g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~-~~a 337 (533)
. ++.+.|.++|+...+. ++-+...|...++.....|+.+.|..+|++.......+ ....|...+..-.+.|. +.+
T Consensus 482 ~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3 5599999999998875 34466677788888888999999999999988764322 23478888888888999 899
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHhh
Q 009506 338 GKLVECVEKSNSKLGYVVKLLLEEQ 362 (533)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~ 362 (533)
.++.+.+.+..|+...+ ..+..-|
T Consensus 561 ~~v~~R~~~~~P~~~~~-~~f~~ry 584 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVNKL-EEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHSTTCCHH-HHHHHHT
T ss_pred HHHHHHHHHhCCCCcHH-HHHHHHh
Confidence 99999998888875433 4444444
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.51 E-value=2.9e-05 Score=73.39 Aligned_cols=162 Identities=11% Similarity=0.097 Sum_probs=103.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCC-CCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHHHH
Q 009506 149 LLDTMGRAKRPWQVKTIYKEMTDNG-LSPNW----NTYASLLRAYGRARYGEDTLSVYREMKEKGMQ-LS----VTLYNT 218 (533)
Q Consensus 149 li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~ 218 (533)
.+..+...|++++|.+++++..+.. ..|+. ..+..+...|...+++++|+..|++..+.... .+ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888777632 12221 12334556666677788888888877763221 12 335777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC-HHHH
Q 009506 219 LLAMCADVGYTDEAFEIFEDMKS----S-ENCQP-DSWTFSSMITICSCRGKVSEAEAMFNEMLE----AGFEPN-LFVL 287 (533)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~m~~----~-~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~ 287 (533)
+...|...|++++|++.|++..+ . +. .+ ...+|..+...|.+.|++++|...+++..+ .+..+. ...|
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDN-EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 77788888888888888777653 1 11 22 234677777788888888888887777654 222222 5567
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHhh
Q 009506 288 TSLIQCYGKAQR-TDDVVRALNRLP 311 (533)
Q Consensus 288 ~~li~~~~~~g~-~~~a~~~~~~m~ 311 (533)
..+..+|.+.|+ .++|.+.|++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 777777777774 577777776654
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.50 E-value=3.3e-06 Score=80.63 Aligned_cols=190 Identities=12% Similarity=0.094 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC--H
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAI----GVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDN----GLSPN--W 178 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~ 178 (533)
.|+.....|...|++++|...|.+..+. +-.. -..+|+.+...|.+.|++++|+..|++..+. | .+. .
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a 116 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHH
Confidence 5777888899999999999999987652 1111 1357888899999999999999999987642 2 122 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCC-H
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEK----GMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN---CQPD-S 249 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~p~-~ 249 (533)
.+++.+...|.+ |++++|+..|++..+. |-.. ...+++.+...|.+.|++++|++.|++...... ..+. .
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 195 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY 195 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence 578888889988 9999999999987653 1111 146788899999999999999999998765310 0111 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCChhHHHH
Q 009506 250 WTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN------LFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~a~~ 305 (533)
..+..+...+...|++++|...|++.. . .|+ ......++.++ ..|+.+.+..
T Consensus 196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 196 KKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 367777788888999999999999987 3 342 12344555555 4566655555
No 119
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.47 E-value=7.3e-06 Score=65.64 Aligned_cols=96 Identities=17% Similarity=0.239 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 188 (533)
..|..+...|.+.|++++|++.|+++.+.. +.+..++..+...+.+.|++++|+..|+++.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444444444444444444444444321 1233344444444444444444444444444321 12333344444444
Q ss_pred HhcCChHHHHHHHHHHHH
Q 009506 189 GRARYGEDTLSVYREMKE 206 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~ 206 (533)
.+.|++++|...|+++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 444444444444444333
No 120
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.47 E-value=7.5e-06 Score=69.62 Aligned_cols=129 Identities=11% Similarity=-0.025 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
+..|..+...+...|++++|+..|++..+.. +.+..+|..+...+...|++++|++.|++..+.. +.+..++..+...
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3456667777777888888888887776542 2356667777777777777777777777776643 3455666666667
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYN--TLLAMCADVGYTDEAFEIFEDM 239 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m 239 (533)
|.+.|++++|...|++..+.... +...+. .++..+.+.|++++|++.++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 77777777777777766665332 333332 2233355556666666666544
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.47 E-value=7.3e-06 Score=69.69 Aligned_cols=127 Identities=14% Similarity=-0.007 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCA 224 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 224 (533)
.|..+...+...|++++|...|++..+.. +.+..++..+...|...|++++|...+++..+.... +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 34555555666666666666666665532 234555566666666666666666666665554322 4555555555666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHH
Q 009506 225 DVGYTDEAFEIFEDMKSSENCQPDSWTFS--SMITICSCRGKVSEAEAMFNEM 275 (533)
Q Consensus 225 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m 275 (533)
..|++++|.+.|++..+.. +.+...+. .++..+.+.|++++|.+.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666665555432 22333332 2222344555555555555443
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.46 E-value=5.8e-06 Score=78.29 Aligned_cols=166 Identities=6% Similarity=-0.061 Sum_probs=125.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHH
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGV-KPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLS-PN----WNTY 181 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~ 181 (533)
...+..+.+.|++++|..++++..+... .|+. ..+..+...+...+++++|+..|++..+.... .+ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3447788899999999999999987421 2221 23344666777788999999999999974322 23 3479
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH----c-CCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCCHHH
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKE----K-GMQLS-VTLYNTLLAMCADVGYTDEAFEIFEDMKS----SENCQPDSWT 251 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~----~-g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~~ 251 (533)
+.+...|...|++++|+..|++..+ . +..+. ..+|..+...|.+.|++++|++.+++..+ .+....-..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999998874 1 22222 34788899999999999999999987654 2221122678
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 009506 252 FSSMITICSCRGK-VSEAEAMFNEMLE 277 (533)
Q Consensus 252 ~~~li~~~~~~g~-~~~A~~~~~~m~~ 277 (533)
|..+..+|.+.|+ +++|.+.|++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999999995 6999999988654
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=8.5e-06 Score=65.22 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009506 143 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM 222 (533)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 222 (533)
...|..+...+...|++++|++.|+++.+.. +.+..++..+...|.+.|++++|..+|+++.+.... +..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 5678889999999999999999999998754 456788999999999999999999999999887543 78889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
|...|++++|.+.|+++.+.. +.+...+..+...+...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhcc
Confidence 999999999999999988764 456677777776665543
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.44 E-value=2.7e-05 Score=73.58 Aligned_cols=167 Identities=10% Similarity=0.033 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CcC--
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW------NTYASLLRAYGRARYGEDTLSVYREMKEKGM---QLS-- 212 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~---~~~-- 212 (533)
..+...+..+...|++++|.+.+++..+..-. +. ..+..+...|...|++++|+..+++..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34556677788888888888888887765321 22 2234455666777888888888888765321 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-
Q 009506 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKS---SENCQP--DSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFEP- 282 (533)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p- 282 (533)
..+|+.+...|...|++++|++.|++..+ ...-.+ ...+|..+...|.+.|++++|...+++..+. +...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45788888888888888888888877652 110011 1257788888888888888888888876542 1111
Q ss_pred CHHHHHHHHHHHHhcCChhHH-HHHHHHhh
Q 009506 283 NLFVLTSLIQCYGKAQRTDDV-VRALNRLP 311 (533)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 311 (533)
-..+|..+..+|.+.|+.++| ...|++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 156777788888888888888 66666654
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.43 E-value=1.4e-05 Score=75.60 Aligned_cols=168 Identities=5% Similarity=-0.084 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCC--
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNM------ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL---SPN-- 177 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~-- 177 (533)
..+...+..+...|++++|++.+++..+.... +. ..+..+...+...|++++|+..|++..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34556788889999999999999988775322 22 2234455667788999999999999885321 122
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH---c-CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKE---K-GMQL--SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----ENCQP 247 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~-g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p 247 (533)
..+|+.+...|...|++++|...|++..+ . +..+ ...+|+.+...|.+.|++++|++.+++..+. +....
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45889999999999999999999998873 2 1111 2268889999999999999999999886542 11011
Q ss_pred CHHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 009506 248 DSWTFSSMITICSCRGKVSEA-EAMFNEMLE 277 (533)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 277 (533)
-..+|..+...|.+.|++++| ...+++...
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 267889999999999999999 777777543
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.42 E-value=3.7e-06 Score=74.39 Aligned_cols=157 Identities=9% Similarity=-0.027 Sum_probs=84.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCC
Q 009506 119 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD----NGLS-PNWNTYASLLRAYGRARY 193 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~-p~~~~~~~ll~~~~~~g~ 193 (533)
...|++++|.++++.+... ......+++.+...+...|++++|+..|++..+ .+.. ....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3467777777755444331 112455667777777777777777777776654 1111 123456666666777777
Q ss_pred hHHHHHHHHHHHHc----CCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcC
Q 009506 194 GEDTLSVYREMKEK----GMQL--SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----ENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 194 ~~~a~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p~~~~~~~li~~~~~~g 263 (533)
+++|...+++..+. +-.+ ....+..+...+...|++++|.+.+++.... +....-..++..+...|...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777666655442 2111 2344555666666666666666666554421 100001223455555566666
Q ss_pred ChHHHHHHHHHHH
Q 009506 264 KVSEAEAMFNEML 276 (533)
Q Consensus 264 ~~~~A~~~~~~m~ 276 (533)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666655543
No 127
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.40 E-value=0.00019 Score=68.84 Aligned_cols=252 Identities=10% Similarity=-0.007 Sum_probs=154.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR-YGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 223 (533)
.++.+-....+.+..++|+++++.++... +-+..+|+.--..+...| .+++++++++.+.....+ +..+|+.-...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34444444455566678999999998764 345667887777777778 589999999999987666 788888887777
Q ss_pred Hhc-C-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 009506 224 ADV-G-YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS--------EAEAMFNEMLEAGFEPNLFVLTSLIQC 293 (533)
Q Consensus 224 ~~~-g-~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~li~~ 293 (533)
.+. + ++++++++++.+.+.. +.|...|+.-.-.+.+.|.++ ++.+.++++.+.. .-|...|+-....
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~l 210 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYL 210 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 776 6 8889999999988765 567888877666666666666 7888888887754 3467777777777
Q ss_pred HHhcCC-------hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCChhHHHHHHHHhhhhhc
Q 009506 294 YGKAQR-------TDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 366 (533)
Q Consensus 294 ~~~~g~-------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (533)
+.+.++ ++++++.+.+....... |...|+-+-..+.+.|....--+. ..-|.....++.. ..
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~----~~~~~~~~~~~~~------~~ 279 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILP----AILPYTASKLNPD------IE 279 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHH----HHGGGTC--------------
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccc----ccccccccccccc------ch
Confidence 766665 45666666666554322 444554444443333321000000 0000000000000 00
Q ss_pred cHHHHHHHHHhhhc----cCccchhhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 367 DFKKEATELFNSIS----KDVKKAYCNCLIDLCVNLNLLENACKLLELGL 412 (533)
Q Consensus 367 ~~~~~a~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 412 (533)
+..+.+.++..... .......+..|++.|...|+.++|.++++.+.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 280 TVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp ------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 11122222222110 01344477889999999999999999999875
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.39 E-value=1e-05 Score=65.41 Aligned_cols=97 Identities=10% Similarity=0.076 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
...+..+...+...|++++|+..|++..... +.+...|..+...+...|++++|++.+++..+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3344444444444444444444444444321 1233344444444444444444444444444321 1223333333334
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 009506 188 YGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~ 206 (533)
|.+.|++++|...|++..+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 4444444444444443333
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.39 E-value=9.4e-06 Score=65.99 Aligned_cols=100 Identities=10% Similarity=-0.008 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
.+...|..+...+.+.|++++|+..|++..+.. +.+...|..+...+...|++++|++.|++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345555555555556666666666665555431 1244455555555555555555555555555432 22344444555
Q ss_pred HHHHhcCChHHHHHHHHHHHHc
Q 009506 186 RAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
.+|.+.|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh
Confidence 5555555555555555544443
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.37 E-value=4e-05 Score=72.02 Aligned_cols=97 Identities=7% Similarity=-0.088 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
...+..+...+.+.|++++|+..|++..+.... +...|..+...|.+.|++++|++.+++..+.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 344445555555555555555555555554322 45555555555555555555555555555432 334555555555
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 009506 258 ICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~ 277 (533)
+|...|++++|...|++..+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555443
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.36 E-value=1.6e-05 Score=64.20 Aligned_cols=115 Identities=17% Similarity=0.050 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009506 180 TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITIC 259 (533)
Q Consensus 180 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (533)
.+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.+++..... +.+...+..+...|
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHH
Confidence 3334444444444444444444444433211 33444444444444445555554444444332 22344444444455
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 009506 260 SCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ 298 (533)
Q Consensus 260 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 298 (533)
.+.|++++|.+.|++..+.. +.+...+..+..++.+.|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 55555555555554444322 113334444444444333
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.33 E-value=1.5e-05 Score=64.77 Aligned_cols=94 Identities=12% Similarity=0.039 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 223 (533)
..|..+...+...|++++|+..|++..+.. +.+..++..+...|...|++++|.+.+++..+.... +...+..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 334444444444444444444444444321 123334444444444444444444444444333211 333333344444
Q ss_pred HhcCCHHHHHHHHHHH
Q 009506 224 ADVGYTDEAFEIFEDM 239 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m 239 (533)
.+.|++++|.+.|++.
T Consensus 95 ~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 4444444444444433
No 133
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.32 E-value=1.9e-05 Score=64.18 Aligned_cols=94 Identities=13% Similarity=0.050 Sum_probs=40.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
|......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++.++.. +.+...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 4444444444444444444444444321 1234444444444444444444444444444322 2233444444444444
Q ss_pred cCChHHHHHHHHHHHH
Q 009506 191 ARYGEDTLSVYREMKE 206 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~ 206 (533)
.|++++|++.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4444444444444444
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.31 E-value=4.7e-06 Score=72.17 Aligned_cols=121 Identities=13% Similarity=0.063 Sum_probs=66.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--H
Q 009506 119 GTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA-YGRARYG--E 195 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~--~ 195 (533)
...|++++|+..|++..+.. +.+...|..+...|...|++++|+..|++..+.. +.+...+..+..+ |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34566666666666655432 2345566666666666666666666666665532 2344555555555 5556665 6
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 196 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 196 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
+|...|++..+.... +...+..+...|...|++++|.+.|++..+.
T Consensus 99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666555332 4455555555666666666666666655553
No 135
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.31 E-value=2.6e-05 Score=63.43 Aligned_cols=89 Identities=11% Similarity=0.063 Sum_probs=34.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|...|+
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHCCC
Confidence 33333344444444444333333221 33333333344444444444444443333322 2233334444444444444
Q ss_pred hHHHHHHHHHHH
Q 009506 265 VSEAEAMFNEML 276 (533)
Q Consensus 265 ~~~A~~~~~~m~ 276 (533)
+++|.+.|++..
T Consensus 97 ~~~A~~~~~~al 108 (126)
T 4gco_A 97 WSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444333
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.30 E-value=1.4e-05 Score=74.10 Aligned_cols=188 Identities=9% Similarity=-0.054 Sum_probs=125.1
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHHCCCCCC---------------
Q 009506 120 TAGNFDGCLNVYEEMKAIGVKPNMITYNNL-------LDTMGRAKRPWQVKTIYKEMTDNGLSPN--------------- 177 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------- 177 (533)
..++...|++.|.++.+.. +-....|+.+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5789999999999998753 2356778777 3555555555555544444333 2221
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--C
Q 009506 178 -------WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP--D 248 (533)
Q Consensus 178 -------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~ 248 (533)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .| .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccH
Confidence 2334456677778888888888888877654 333355556667888888888888887554321 11 1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhCC
Q 009506 249 SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPELG 314 (533)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 314 (533)
...+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23677778888888888888888888764332243 3355666677788888888888888887753
No 137
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.30 E-value=0.00023 Score=68.25 Aligned_cols=184 Identities=5% Similarity=0.003 Sum_probs=141.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 189 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 189 (533)
++.+-....+.+..++|+++++++.... +-+..+||.--..+...| .+++++++++.+.... +-+..+|+.--..+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3333333344556678999999998753 235667888777787888 5999999999999865 457788888777777
Q ss_pred hc-C-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 009506 190 RA-R-YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTD--------EAFEIFEDMKSSENCQPDSWTFSSMITIC 259 (533)
Q Consensus 190 ~~-g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (533)
+. + ++++++++++.+.+...+ +-.+|+.-.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~SAW~~R~~lL 211 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNSAWGWRWYLR 211 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 76 7 889999999999987655 8888888777777766666 8999999998876 57899999988888
Q ss_pred HhcCC-------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 009506 260 SCRGK-------VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRT 300 (533)
Q Consensus 260 ~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 300 (533)
.+.+. ++++.+.++++.... +-|...|+-+-..+.+.|+.
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCC
Confidence 88876 688888888887753 34677787776666666654
No 138
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=6.4e-06 Score=72.80 Aligned_cols=157 Identities=10% Similarity=0.020 Sum_probs=108.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-cCHHHHHHHHHHHHhcCC
Q 009506 154 GRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK----GMQ-LSVTLYNTLLAMCADVGY 228 (533)
Q Consensus 154 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~ 228 (533)
...|++++|.++++.+... ......++..+...|...|++++|...+++..+. |.. ....+++.+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4678899999865555432 1235678888888899999999999998887662 222 234667778888899999
Q ss_pred HHHHHHHHHHHHhC----CCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhc
Q 009506 229 TDEAFEIFEDMKSS----ENCQP--DSWTFSSMITICSCRGKVSEAEAMFNEMLEA----GFEP-NLFVLTSLIQCYGKA 297 (533)
Q Consensus 229 ~~~A~~~~~~m~~~----~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~ 297 (533)
+++|.+.+++.... +. .+ ....+..+...+...|++++|...+++..+. +... -..++..+...|...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPE-DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 99999988776542 21 11 2455778888888899999999988886542 1111 123456777788888
Q ss_pred CChhHHHHHHHHhhh
Q 009506 298 QRTDDVVRALNRLPE 312 (533)
Q Consensus 298 g~~~~a~~~~~~m~~ 312 (533)
|++++|...+++..+
T Consensus 161 g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 161 KNLLEAQQHWLRARD 175 (203)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 888888888877654
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.28 E-value=1.5e-05 Score=67.16 Aligned_cols=94 Identities=11% Similarity=-0.042 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 009506 181 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICS 260 (533)
Q Consensus 181 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~ 260 (533)
+..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|++.|++..+.. +.+...|..+..+|.
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHH
Confidence 333444444444444444444444443322 34444444444444444444444444444332 223334444444444
Q ss_pred hcCChHHHHHHHHHHHH
Q 009506 261 CRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 261 ~~g~~~~A~~~~~~m~~ 277 (533)
+.|++++|...|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444433
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.27 E-value=1e-05 Score=68.13 Aligned_cols=97 Identities=11% Similarity=-0.062 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMC 223 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 223 (533)
..+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..|++..+.... +...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 345555666666677777777776666543 335566666666666777777777777666665443 455666666667
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 009506 224 ADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~ 242 (533)
.+.|++++|.+.|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 7777777777777666653
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.27 E-value=1.8e-05 Score=76.64 Aligned_cols=127 Identities=7% Similarity=-0.093 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 144 ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN----------------WNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 144 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
..|..+...+.+.|++++|+..|++..+.. |+ ..+|..+..+|.+.|++++|+..|++..+.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555555555555555555432 11 245555555566666666666666655554
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHH
Q 009506 208 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA-EAMFNEM 275 (533)
Q Consensus 208 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m 275 (533)
... +...|..+..+|...|++++|++.|++..+.. +.+...+..+...+.+.|+.++| ..+|+.|
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 45555555556666666666666665555533 23455555555555555555555 2344444
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.26 E-value=1.9e-05 Score=76.39 Aligned_cols=130 Identities=9% Similarity=-0.043 Sum_probs=112.3
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----------------MITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
+...|..+...|.+.|++++|+..|++..+.. |+ ...|..+..+|.+.|++++|+..|++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46678889999999999999999999998753 43 4889999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 009506 171 DNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA-FEIFEDMK 240 (533)
Q Consensus 171 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 240 (533)
+.. +.+...|..+..+|...|++++|+..|++..+.... +...+..+...+.+.|+.++| .++++.|.
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 864 457889999999999999999999999999987554 678899999999999999988 44555554
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.26 E-value=9.8e-06 Score=70.12 Aligned_cols=99 Identities=11% Similarity=0.115 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCh--hHHHHHHHHHHHCCCCCCHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDT-MGRAKRP--WQVKTIYKEMTDNGLSPNWNTYAS 183 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~-~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~ 183 (533)
+...|..+...|...|++++|+..|++..+.. +.+...|..+..+ +...|++ ++|+..|++..+.. +-+...+..
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 120 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALML 120 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 44555555555555555555555555554421 1234444444444 4455555 55555555555432 223445555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+...|.+.|++++|...|++..+.
T Consensus 121 la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 121 LASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhh
Confidence 555555555555555555555544
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.26 E-value=2.8e-06 Score=80.07 Aligned_cols=99 Identities=6% Similarity=-0.047 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
+...+..+...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|+..+++..+.. +-+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44566667777777777777777777776542 2256667777777777777777777777776543 345566777777
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 009506 187 AYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+|.+.|++++|...|++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777766553
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=8e-05 Score=58.68 Aligned_cols=59 Identities=15% Similarity=0.102 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
+..+...+...|++++|+..|++..... +.+...|..+...+...|++++|...+++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 65 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV 65 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3344444444444444444444443321 1133333333344444444444444444433
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.17 E-value=8.4e-06 Score=68.49 Aligned_cols=53 Identities=15% Similarity=0.049 Sum_probs=19.8
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDM 239 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 239 (533)
..+.+.|++++|+..|++....... +...|..+..+|...|++++|++.|++.
T Consensus 29 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3333334444444333333333221 3333333333333334444444444333
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.16 E-value=8.4e-06 Score=68.48 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLI 291 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 291 (533)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|...|++..... +.+...+..+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg 96 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence 45566777788888899999999998887754 4578888888888888999999999998887753 23567777888
Q ss_pred HHHHhcCChhHHHHHHHHhhhC
Q 009506 292 QCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
.+|...|++++|...|++..+.
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888988888888887654
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.14 E-value=0.0001 Score=58.06 Aligned_cols=113 Identities=11% Similarity=-0.027 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
+...|..+...+...|++++|...|++..+.. +.+...+..+...|.+.|++++|...+++..+.... +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 34577888899999999999999999998754 447888999999999999999999999999887544 6888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009506 222 MCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 258 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (533)
.+...|++++|.+.|++..+.. +.+...+..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE--ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHh
Confidence 9999999999999999998764 3455565555443
No 149
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.12 E-value=5.8e-05 Score=69.96 Aligned_cols=198 Identities=10% Similarity=0.046 Sum_probs=141.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHH------------cCCC----c
Q 009506 155 RAKRPWQVKTIYKEMTDNGLSPNWNTYASL-------LRAYGRARYGEDTLSVYREMKE------------KGMQ----L 211 (533)
Q Consensus 155 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~------------~g~~----~ 211 (533)
..++...|.+.|.+..+.. +-....|+.+ ...+.+.++..+++..+..-.+ .|+- .
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 6899999999999999864 3456777777 4555555555555555544433 1210 0
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----
Q 009506 212 ----SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN---- 283 (533)
Q Consensus 212 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---- 283 (533)
-...+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... |+
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~ 170 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLA 170 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccH
Confidence 0234455667788899999999999988764 354446667777899999999999999855442 32
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCC--HHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHH
Q 009506 284 LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPD--DRFCGCLLNVMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLE 360 (533)
Q Consensus 284 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~ 360 (533)
...+..+-.++.+.|++++|+..|++.......|. .........++.+.|+ ++|..+|+.+...+|+ ..+...|..
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 23677788899999999999999999986544354 2345556667778888 9999999999999988 555455543
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.11 E-value=0.0023 Score=60.92 Aligned_cols=237 Identities=8% Similarity=0.070 Sum_probs=150.6
Q ss_pred HHHHHHHHH---HHHcCChH-HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCC
Q 009506 109 NAFSTLIKL---YGTAGNFD-GCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKR----------PWQVKTIYKEMTDNG 173 (533)
Q Consensus 109 ~~~~~li~~---~~~~g~~~-~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g 173 (533)
..|..+... ..+.|.+. +|+++++.+... .|+ ..+||.=-..+...+. +++++.+++.+....
T Consensus 27 ~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 27 KLYQSATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 334444443 34566665 799999999874 354 4456654333333222 567888888888753
Q ss_pred CCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCCHH
Q 009506 174 LSPNWNTYASLLRAYGRAR--YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY-TDEAFEIFEDMKSSENCQPDSW 250 (533)
Q Consensus 174 ~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~ 250 (533)
+-+..+|+.-.-.+.+.+ .+++++.+++.+.+.... |-..|+.-.-.+...|. ++++++.++.+.+.. +-|..
T Consensus 105 -PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~S 180 (331)
T 3dss_A 105 -PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYS 180 (331)
T ss_dssp -TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHH
T ss_pred -CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHH
Confidence 457778887777777777 478899999999887655 78888887777778887 688888888888765 56777
Q ss_pred HHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CChhHHHH
Q 009506 251 TFSSMITICSCR--------------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA-----------QRTDDVVR 305 (533)
Q Consensus 251 ~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------g~~~~a~~ 305 (533)
.|+.....+.+. +.++++.+.++...... +-|...|+-+-..+.+. +.++++++
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 777666665554 34677888887776643 33566666554444443 34667777
Q ss_pred HHHHhhhCCCCCCHH-HHHHHH---HHHhcCCh-HHHHHHHHHHHhcCCChhHH
Q 009506 306 ALNRLPELGITPDDR-FCGCLL---NVMTQTPK-EELGKLVECVEKSNSKLGYV 354 (533)
Q Consensus 306 ~~~~m~~~g~~p~~~-~~~~ll---~~~~~~~~-~~a~~~~~~~~~~~~~~~~~ 354 (533)
.++++.+.. ||.. .+..++ .+....+. ++...++..+.+.+|.....
T Consensus 260 ~~~elle~~--pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~ 311 (331)
T 3dss_A 260 SCKELQELE--PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 311 (331)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHhhC--cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence 777776643 4432 221111 12222333 56666666666666655443
No 151
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=0.00021 Score=71.31 Aligned_cols=198 Identities=7% Similarity=-0.058 Sum_probs=139.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-C---------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCCC
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKP-N---------------MITYNNLLDTMGRAKRPWQVKTIYKEMTDN-GLSPN 177 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~ 177 (533)
...+.+.|++++|++.|.++.+..... + ...+..|...|...|++++|.+.+..+... +-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 445678899999999999998742111 1 124778899999999999999999887642 11122
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 009506 178 W----NTYASLLRAYGRARYGEDTLSVYREMKE----KGMQL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS----EN 244 (533)
Q Consensus 178 ~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~----~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 244 (533)
. .+.+.+-..+...|+.+.+..++.+... .+..+ -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 2233344445567899999999887754 23222 2567788899999999999999999876542 11
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 245 CQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA--GFE-P-N--LFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
-.....+|..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 0113567889999999999999999999886542 111 1 1 24566667777888999999988877643
No 152
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=0.00014 Score=60.13 Aligned_cols=109 Identities=6% Similarity=0.006 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTY 181 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 181 (533)
.+...+..+...+.+.|++++|+..|++..+. .|+ ...|..+..++...|++++|+..|++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35677888999999999999999999999874 466 5778888888889999999999998888753 3467778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNT 218 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~ 218 (533)
..+..+|...|++++|...|++..+.... +...+..
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 138 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEA 138 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHH
Confidence 88888888888888888888888776432 3444433
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.09 E-value=0.00011 Score=59.28 Aligned_cols=91 Identities=12% Similarity=0.010 Sum_probs=38.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 262 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (533)
.+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|...
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHH
Confidence 3333444444444444444444433221 33444444444444444444444444444332 22344444444444444
Q ss_pred CChHHHHHHHHHHH
Q 009506 263 GKVSEAEAMFNEML 276 (533)
Q Consensus 263 g~~~~A~~~~~~m~ 276 (533)
|++++|...|++..
T Consensus 86 ~~~~~A~~~~~~al 99 (126)
T 3upv_A 86 KEYASALETLDAAR 99 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHH
Confidence 44444444444433
No 154
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.08 E-value=9.3e-05 Score=62.98 Aligned_cols=96 Identities=13% Similarity=0.005 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 258 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (533)
..+..+...|.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 34444555555555555555555555544322 44555555555555555555555555555443 2345555555555
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 009506 259 CSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 259 ~~~~g~~~~A~~~~~~m~~ 277 (533)
|.+.|++++|.+.|++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555555544
No 155
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.07 E-value=4.8e-05 Score=61.35 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 250 WTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
.+|..+...|.+.|++++|.+.|++..+
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.07 E-value=0.00011 Score=59.37 Aligned_cols=98 Identities=12% Similarity=0.058 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
...|..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..|++..+.. +-+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456667777777788888888887776642 2356677777777777777777777777777643 3346677777777
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 009506 188 YGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~ 207 (533)
|...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 77777777777777776654
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.06 E-value=0.00011 Score=60.08 Aligned_cols=94 Identities=7% Similarity=-0.079 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 258 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (533)
..+..+...+.+.|++++|...|++..+.... +...|..+...+...|++++|...|++..+.. +.+...|..+..+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 86 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHHHHH
Confidence 33344444444444444444444444333221 33334444444444444444444444433322 2233344444444
Q ss_pred HHhcCChHHHHHHHHHH
Q 009506 259 CSCRGKVSEAEAMFNEM 275 (533)
Q Consensus 259 ~~~~g~~~~A~~~~~~m 275 (533)
|...|++++|...|++.
T Consensus 87 ~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 87 QLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 44444444444444443
No 158
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.06 E-value=9.3e-05 Score=65.24 Aligned_cols=88 Identities=11% Similarity=0.026 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI 258 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (533)
.+|..+..+|.+.|++++|+..+++..+.... +...|..+..+|...|++++|++.|++..+.. +.+...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 34444444555555555555555555444221 34445555555555555555555555544432 2234444444444
Q ss_pred HHhcCChHHHH
Q 009506 259 CSCRGKVSEAE 269 (533)
Q Consensus 259 ~~~~g~~~~A~ 269 (533)
+...++.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.05 E-value=8.1e-05 Score=63.36 Aligned_cols=99 Identities=10% Similarity=0.012 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
+...|..+...|.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..|++.++.. +-+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45566666666777777777777777666532 2255566666666666666666666666666543 234555666666
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 009506 187 AYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+|.+.|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666666666666655554
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.05 E-value=9.8e-05 Score=65.11 Aligned_cols=132 Identities=9% Similarity=-0.032 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-PN--------------MITYNNLLDTMGRAKRPWQVKTIYKEMTDN 172 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 172 (533)
...+..+...+.+.|++++|+..|++..+.... ++ ...|..+..+|...|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 455777888999999999999999999874211 11 278888999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHh
Q 009506 173 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAF-EIFEDMKS 241 (533)
Q Consensus 173 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 241 (533)
. +.+...+..+..+|...|++++|...|++..+.... +...+..+...+...++.+++. ..|..+..
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 457889999999999999999999999999887543 6778888888887777777666 44555443
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.04 E-value=0.00018 Score=59.44 Aligned_cols=98 Identities=8% Similarity=-0.101 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHH
Q 009506 142 NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN----WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYN 217 (533)
Q Consensus 142 d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 217 (533)
+...+..+...+...|++++|++.|++..+. .|+ ...+..+...|.+.|++++|+..+++..+.... +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 4556666667777777777777777777654 344 455666666666666666666666666554322 455555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 218 TLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 218 ~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
.+..+|...|++++|.+.|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666666666666666666665543
No 162
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.04 E-value=7.1e-05 Score=62.06 Aligned_cols=22 Identities=18% Similarity=0.068 Sum_probs=8.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHH
Q 009506 253 SSMITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~ 274 (533)
..+..+|...|++++|.+.|+.
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~ 111 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYS 111 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333333333333333333
No 163
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.01 E-value=6.2e-05 Score=58.78 Aligned_cols=91 Identities=15% Similarity=0.043 Sum_probs=37.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHh
Q 009506 219 LLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP--NLFVLTSLIQCYGK 296 (533)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~ 296 (533)
+...+...|++++|...|++..+.. +.+...|..+...|...|++++|.+.|++..+.. +. +...+..+..+|.+
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRY 88 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHH
Confidence 3333444444444444444433322 2233344444444444444444444444443321 11 23444444444444
Q ss_pred c-CChhHHHHHHHHhhh
Q 009506 297 A-QRTDDVVRALNRLPE 312 (533)
Q Consensus 297 ~-g~~~~a~~~~~~m~~ 312 (533)
. |++++|.+.|++..+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKL 105 (112)
T ss_dssp CSSCSHHHHHHHHHHGG
T ss_pred HhCCHHHHHHHHHHHhh
Confidence 4 444444444444433
No 164
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.00 E-value=6.3e-05 Score=62.39 Aligned_cols=95 Identities=8% Similarity=-0.106 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYG 189 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 189 (533)
.+..+...+.+.|++++|+..|++..... +.+...|..+..++.+.|++++|+..|++..+.. +-+...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34444555556666666666666555432 1244555555555556666666666666555532 233445555555555
Q ss_pred hcCChHHHHHHHHHHHH
Q 009506 190 RARYGEDTLSVYREMKE 206 (533)
Q Consensus 190 ~~g~~~~a~~~~~~m~~ 206 (533)
..|++++|...|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555544
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.00 E-value=0.00012 Score=59.51 Aligned_cols=104 Identities=10% Similarity=0.053 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCC----HHHH
Q 009506 214 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAG--FEPN----LFVL 287 (533)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~ 287 (533)
..+..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.|++..+.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 345555666666666666666666665543 3456666666666666666666666666655421 1111 2345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHH
Q 009506 288 TSLIQCYGKAQRTDDVVRALNRLPELGITPDDRF 321 (533)
Q Consensus 288 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 321 (533)
..+..+|...|++++|++.|++..+. .||..+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~ 118 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPEL 118 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHH
Confidence 55666666777777777777766542 344443
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.98 E-value=8.7e-05 Score=57.88 Aligned_cols=99 Identities=10% Similarity=-0.014 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CHHHHHH
Q 009506 177 NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQP--DSWTFSS 254 (533)
Q Consensus 177 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~ 254 (533)
+...+..+...+.+.|++++|...|++..+.... +...|..+...+...|++++|.+.|++..+.. +. +...+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHH
Confidence 3456667777888888888888888888776543 67778888888888888888888888887754 34 5778888
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHHc
Q 009506 255 MITICSCR-GKVSEAEAMFNEMLEA 278 (533)
Q Consensus 255 li~~~~~~-g~~~~A~~~~~~m~~~ 278 (533)
+...|.+. |++++|.+.++.....
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 88888888 8888888888887664
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.97 E-value=0.0002 Score=58.48 Aligned_cols=98 Identities=6% Similarity=-0.040 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
++..|..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45556666666666666666666666655432 2234555555555556666666666665555432 223455555555
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 009506 187 AYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~ 206 (533)
+|...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555544
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.96 E-value=8.8e-05 Score=59.70 Aligned_cols=98 Identities=15% Similarity=0.152 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL--SPN----WNTYA 182 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~~ 182 (533)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|+..|++..+..- .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 445556666666666666666666665532 23455555556666666666666666665554320 111 34444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
.+..+|.+.|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4455555555555555555554443
No 169
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.95 E-value=0.00015 Score=58.88 Aligned_cols=96 Identities=18% Similarity=0.103 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCC----HHHHHHH
Q 009506 181 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPD----SWTFSSM 255 (533)
Q Consensus 181 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p~----~~~~~~l 255 (533)
+..+...|.+.|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.|++..+... ...+ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344444555555555555555555544322 444555555555555555555555554433210 0011 1245555
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 009506 256 ITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 256 i~~~~~~g~~~~A~~~~~~m~~ 277 (533)
...|...|++++|.+.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5566666666666666666544
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.89 E-value=8.2e-05 Score=62.37 Aligned_cols=98 Identities=18% Similarity=0.057 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVK-PN----MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGL-SPN---- 177 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~---- 177 (533)
..++..+...|...|++++|+..|++..+.... .+ ..++..+...+...|++++|.+.+++..+..- ..+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 345777777888888888888888876542100 11 13556666666677777777777666553110 011
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMK 205 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~ 205 (533)
..++..+...|...|++++|.+.+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2344445555555555555555555443
No 171
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.88 E-value=0.004 Score=63.31 Aligned_cols=94 Identities=9% Similarity=0.146 Sum_probs=67.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHH-CCCC-CCHHHHHHHHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR-PWQVKTIYKEMTD-NGLS-PNWNTYASLLRA 187 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~-~~~a~~~~~~m~~-~g~~-p~~~~~~~ll~~ 187 (533)
|...+..+-. |+++.|..+|++.... .|++..|...+.-..+.+. .+.+..+|+..+. -|.. .+...|...+..
T Consensus 18 yer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f 94 (493)
T 2uy1_A 18 MEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEE 94 (493)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHH
Confidence 3334444332 8899999999999874 5899999999988877764 4567788888775 3533 467888888877
Q ss_pred HHh----cCChHHHHHHHHHHHHc
Q 009506 188 YGR----ARYGEDTLSVYREMKEK 207 (533)
Q Consensus 188 ~~~----~g~~~~a~~~~~~m~~~ 207 (533)
+.. .++++.+..+|++....
T Consensus 95 ~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 95 EGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp TSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHhchhhhHHHHHHHHHHHHHHhC
Confidence 643 46788899999998874
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.85 E-value=0.00012 Score=61.30 Aligned_cols=132 Identities=11% Similarity=-0.045 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCCHHH
Q 009506 181 YASLLRAYGRARYGEDTLSVYREMKEKGMQ-LS----VTLYNTLLAMCADVGYTDEAFEIFEDMKSS----ENCQPDSWT 251 (533)
Q Consensus 181 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p~~~~ 251 (533)
+..+...|...|++++|...+++..+.... .+ ..++..+...+...|++++|.+.+++.... +........
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 344444444445555554444443321000 00 134445555555566666666655554321 100001334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEA----GFEP-NLFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
+..+...|...|++++|.+.+++..+. +..+ ....+..+...|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555566666666666666666654431 1111 123455566666667777777776666543
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.85 E-value=0.012 Score=55.91 Aligned_cols=139 Identities=6% Similarity=-0.043 Sum_probs=92.6
Q ss_pred HhcCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 009506 154 GRAKRPW-QVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY----------GEDTLSVYREMKEKGMQLSVTLYNTLLAM 222 (533)
Q Consensus 154 ~~~g~~~-~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 222 (533)
.+.|.+. +|+++++.++... +-+..+|+.--..+...+. +++++.+++.+.....+ +..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3455555 7899999888754 2334455543333332222 56778888888776555 77788877777
Q ss_pred HHhcC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 223 CADVG--YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK-VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 223 ~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
+.+.| .+++++++++.+.+.. +.|...|+.-.-++...|. ++++.+.++.+.+.. +-|...|+-....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence 77777 4788888888888765 5677778777777777777 578888888887754 34566666555554443
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.84 E-value=0.00021 Score=72.56 Aligned_cols=116 Identities=9% Similarity=0.019 Sum_probs=49.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|.+.|++++|
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3444445555555444443222 34444445555555555555555555544432 23444455555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHH
Q 009506 269 EAMFNEMLEAGFEPNLFVLTSLIQC--YGKAQRTDDVVRALN 308 (533)
Q Consensus 269 ~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 308 (533)
.+.|++..+.. +-+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555544421 0111222222222 444455555555554
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.84 E-value=0.00016 Score=58.15 Aligned_cols=14 Identities=14% Similarity=-0.073 Sum_probs=5.0
Q ss_pred HHhcCCHHHHHHHH
Q 009506 223 CADVGYTDEAFEIF 236 (533)
Q Consensus 223 ~~~~g~~~~A~~~~ 236 (533)
+...|++++|+..|
T Consensus 61 ~~~~g~~~~A~~~~ 74 (121)
T 1hxi_A 61 QAENEKDGLAIIAL 74 (121)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 33333333333333
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.78 E-value=0.00024 Score=57.09 Aligned_cols=95 Identities=8% Similarity=-0.088 Sum_probs=63.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
+..+...+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|+..|++..+.. +-+...+..+..+|.+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 4455666777777777777777776542 2256666677777777777777777777776643 2345666667777777
Q ss_pred cCChHHHHHHHHHHHHc
Q 009506 191 ARYGEDTLSVYREMKEK 207 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~ 207 (533)
.|++++|+..|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 77777777777766554
No 177
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.77 E-value=4.1e-05 Score=61.12 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=21.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009506 181 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 238 (533)
Q Consensus 181 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (533)
+..+...|.+.|++++|+..|++..+.... +..++..+..++.+.|++++|++.|++
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 86 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVELLLK 86 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333333333344444444444433333222 233333333333444444444444333
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.0048 Score=61.25 Aligned_cols=232 Identities=9% Similarity=-0.061 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTD----NGLSPN-WN 179 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~ 179 (533)
.+..|...|.+.|++++|.+.+..+... +..++. .+.+.+-..+...|+++++.++++.... .+..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 4678999999999999999999987642 111222 1223333344456889999999988763 333333 46
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc--CC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC-C--H
Q 009506 180 TYASLLRAYGRARYGEDTLSVYREMKEK--GM---QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSE--NCQP-D--S 249 (533)
Q Consensus 180 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~p-~--~ 249 (533)
++..|...|...|++++|..++++.... +. .....+|..++..|...|++++|..+++...... ...| . .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7888999999999999999999987653 11 1135678889999999999999999998765421 1012 1 3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCCHHHHH----HHHHHHHhcCChhHHHHHHHHhh--hCCCCCCH
Q 009506 250 WTFSSMITICSCRGKVSEAEAMFNEMLE----AGFEPNLFVLT----SLIQCYGKAQRTDDVVRALNRLP--ELGITPDD 319 (533)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~----~li~~~~~~g~~~~a~~~~~~m~--~~g~~p~~ 319 (533)
..+..+...+...|++++|...|.+..+ .+......... .++-+....+..+.....+.... .....++.
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGI 296 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhh
Confidence 5677778888899999999998887654 22222221111 11122222333344444443322 22233445
Q ss_pred HHHHHHHHHHhcCChHHHHHHH
Q 009506 320 RFCGCLLNVMTQTPKEELGKLV 341 (533)
Q Consensus 320 ~~~~~ll~~~~~~~~~~a~~~~ 341 (533)
..+..++.++....-....+.+
T Consensus 297 ~~~~~l~~~~~~~~l~~~~~~~ 318 (434)
T 4b4t_Q 297 DAMKAVAEAYNNRSLLDFNTAL 318 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHH
Confidence 5777788887766554444333
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.73 E-value=0.0005 Score=69.43 Aligned_cols=120 Identities=8% Similarity=-0.096 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 143 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN----------------WNTYASLLRAYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 206 (533)
...|..+...+.+.|++++|+..|++.++.. |+ ..+|..+..+|.+.|++++|+..|++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3456666677777777777777777776532 21 23444444444444444444444444444
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 207 KGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 267 (533)
Q Consensus 207 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (533)
.... +...|..+..+|...|++++|+..|++..+.. +.+...+..+..++.+.++.++
T Consensus 346 ~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 346 LDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHH
T ss_pred cCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 3222 34444444444444444444444444444322 1233334444444444444333
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.72 E-value=9.4e-05 Score=75.16 Aligned_cols=117 Identities=15% Similarity=-0.003 Sum_probs=67.5
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 009506 153 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEA 232 (533)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 232 (533)
+.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.+++..+.... +...|..+..+|.+.|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 345566666666666655532 234566666666666666666666666666665433 556666667777777777777
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 009506 233 FEIFEDMKSSENCQPDSWTFSSMITI--CSCRGKVSEAEAMFN 273 (533)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 273 (533)
++.|++..+.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777666543 2233344444444 667777777777776
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.72 E-value=0.0012 Score=52.90 Aligned_cols=89 Identities=7% Similarity=0.006 Sum_probs=36.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 009506 115 IKLYGTAGNFDGCLNVYEEMKAIGVKPNM----ITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN---WNTYASLLRA 187 (533)
Q Consensus 115 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~ 187 (533)
...+.+.|++++|+..|+++.+.. |+. ..+..+..++.+.|++++|+..|++..+.. +.+ ..++..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 334444455555555554444321 111 233334444444444444444444444321 111 2333334444
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 009506 188 YGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~ 206 (533)
|.+.|++++|...|+++.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4444444444444444443
No 182
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.71 E-value=0.00038 Score=70.27 Aligned_cols=129 Identities=11% Similarity=-0.018 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----------------MITYNNLLDTMGRAKRPWQVKTIYKEMTD 171 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (533)
...|..+...|.+.|++++|+..|++..+. .|+ ...|+.+..+|.+.|++++|+..|++.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 456888899999999999999999998874 233 57899999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 009506 172 NGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFE-IFEDMK 240 (533)
Q Consensus 172 ~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~ 240 (533)
.. +.+...|..+..+|.+.|++++|+..|++..+.... +...+..+...+.+.++.+++.+ ++..|.
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64 457889999999999999999999999999887543 56778888888888888887764 444443
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.70 E-value=0.0012 Score=53.11 Aligned_cols=88 Identities=14% Similarity=-0.009 Sum_probs=36.2
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSV---TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD---SWTFSSMITICS 260 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~ 260 (533)
.+.+.|++++|...|++..+.... +. ..+..+...+.+.|++++|.+.|++..... +.+ ...+..+..+|.
T Consensus 11 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 11 DALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHH
Confidence 333444444444444444433211 11 233334444444444444444444444322 111 333444444444
Q ss_pred hcCChHHHHHHHHHHHH
Q 009506 261 CRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 261 ~~g~~~~A~~~~~~m~~ 277 (533)
+.|++++|...|+++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444443
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.67 E-value=9.8e-05 Score=58.83 Aligned_cols=86 Identities=8% Similarity=0.050 Sum_probs=58.5
Q ss_pred cCChHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 191 ARYGEDTLSVYREMKEKGM--QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
.|++++|+..|++..+.+. +-+...|..+...|...|++++|++.|++..+.. +-+...+..+..+|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHH
Confidence 4667777777777766531 2245667777777888888888888887777654 44577777777778888888888
Q ss_pred HHHHHHHHHc
Q 009506 269 EAMFNEMLEA 278 (533)
Q Consensus 269 ~~~~~~m~~~ 278 (533)
...|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888776653
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.64 E-value=0.00045 Score=67.54 Aligned_cols=90 Identities=9% Similarity=-0.008 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 009506 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ 292 (533)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 292 (533)
..+|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4455555556666666666666666655543 3345556666666666666666666666655432 123444555555
Q ss_pred HHHhcCChhHHHH
Q 009506 293 CYGKAQRTDDVVR 305 (533)
Q Consensus 293 ~~~~~g~~~~a~~ 305 (533)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.62 E-value=0.00062 Score=66.55 Aligned_cols=139 Identities=6% Similarity=-0.031 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 188 (533)
..|..+...|.+.|++++|++.|++..+. .++. ......+++.+ . -+-+..+|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~~~-------~-~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADGAK-------L-QPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHHGG-------G-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHHHH-------H-HHHHHHHHHHHHHHH
Confidence 44777788888888888888888887651 0000 00000010000 0 011234555666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
.+.|++++|++.+++..+.... +...|..+..+|...|++++|++.|++..+.. +.+...+..+...+.+.++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666654332 45566666666666666666666666665543 23455556666666666665555
Q ss_pred HH
Q 009506 269 EA 270 (533)
Q Consensus 269 ~~ 270 (533)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 187
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.57 E-value=0.00031 Score=67.79 Aligned_cols=148 Identities=7% Similarity=-0.002 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
...+..+...|.+.|++++|+..|++.... .|+...+ ...++.+++...+ . ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-------~~~~~~~~~~~~l---~-------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMF-------QLYGKYQDMALAV---K-------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHH-------TCCHHHHHHHHHH---H-------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhh-------hhcccHHHHHHHH---H-------HHHHHHHHHH
Confidence 445666666666777777777777776552 2433211 1222222222211 1 1256666667
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCChH
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITI-CSCRGKVS 266 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~~ 266 (533)
|.+.|++++|+..+++..+.... +...|..+..+|...|++++|++.|++..+.. +.+...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777766665432 56666666677777777777777776665532 2233334433333 22334455
Q ss_pred HHHHHHHHHHH
Q 009506 267 EAEAMFNEMLE 277 (533)
Q Consensus 267 ~A~~~~~~m~~ 277 (533)
.+.++|..|..
T Consensus 317 ~a~~~~~~~l~ 327 (338)
T 2if4_A 317 KQKEMYKGIFK 327 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHhhC
Confidence 55555555543
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.57 E-value=0.0011 Score=56.11 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3455555566666666666666666655543 34455666666666666666666666666555
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.51 E-value=0.0014 Score=55.41 Aligned_cols=116 Identities=14% Similarity=0.084 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
+..+......+.+.|++++|+..|++.... +............. +..+. +-+..+|..+..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~------------~~~~~~~~~~~~~~--~~~~~----~~~~~~~~nla~~ 72 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTR------------LDTLILREKPGEPE--WVELD----RKNIPLYANMSQC 72 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHTSCTTSHH--HHHHH----HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------HHHhcccCCCCHHH--HHHHH----HHHHHHHHHHHHH
Confidence 445666677777777777777777776542 00000000000000 00000 1223456666666
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
|.+.|++++|+..+++..+.... +...|..+..+|...|++++|.+.|++....
T Consensus 73 ~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 73 YLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 66677777777777666665433 5666666667777777777777777666653
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.49 E-value=0.00027 Score=68.28 Aligned_cols=96 Identities=9% Similarity=0.016 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH-H
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAM-C 223 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~-~ 223 (533)
.|+.+..+|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++..+.... +...+..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 67888889999999999999999998754 347788999999999999999999999988765332 44455555544 3
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 009506 224 ADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 224 ~~~g~~~~A~~~~~~m~~~ 242 (533)
...+..+++.++|..|...
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 3445677778888777653
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.44 E-value=0.00076 Score=68.28 Aligned_cols=125 Identities=11% Similarity=0.023 Sum_probs=71.4
Q ss_pred HHhcCChHHHHHHHHHHHHc-----CC-Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCC-HHHHHH
Q 009506 188 YGRARYGEDTLSVYREMKEK-----GM-QL-SVTLYNTLLAMCADVGYTDEAFEIFEDMKS-----SENCQPD-SWTFSS 254 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~-----g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~-~~~~~~ 254 (533)
+...|++++|+.++++..+. |. .| ...+++.|...|...|++++|+.++++..+ .|.-.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777665542 11 11 245666777777777777777776665432 1211232 455667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH---cCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 255 MITICSCRGKVSEAEAMFNEMLE---AGFEPN----LFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m~~---~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
|...|...|++++|+.++++..+ .-+.|+ ..+.+.+-+++...+.+++|..+|.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766543 111122 23344455566666667777777766654
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.43 E-value=0.016 Score=59.88 Aligned_cols=168 Identities=11% Similarity=-0.031 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY----------TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRG 263 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (533)
.++|++.++++.+.... +..+|+.--..+.+.|+ ++++++.++.+.+.. +-+..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcc
Confidence 34566666666665444 45556555555555554 677777777776654 456666766666666667
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcC--------
Q 009506 264 --KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQ-RTDDVVRALNRLPELGITPDDRFCGCLLNVMTQT-------- 332 (533)
Q Consensus 264 --~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------- 332 (533)
+++++.+.++++.+.. +-|..+|+--...+.+.| .++++++.+.++.+.... |...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 5577777777777654 245666666666666666 677777777777665433 444554444443331
Q ss_pred ------Ch-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhhc
Q 009506 333 ------PK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIEG 366 (533)
Q Consensus 333 ------~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 366 (533)
+. +++.+.++.....+|+....+..+...+.+.+
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 23 67777777777778877777665555554433
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.39 E-value=0.00077 Score=68.21 Aligned_cols=125 Identities=9% Similarity=-0.050 Sum_probs=71.9
Q ss_pred HHhcCChhHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-Cc-CHHHHHH
Q 009506 153 MGRAKRPWQVKTIYKEMTDN---GLSPN----WNTYASLLRAYGRARYGEDTLSVYREMKEK-----GM-QL-SVTLYNT 218 (533)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~---g~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~-~~-~~~~~~~ 218 (533)
+-..|++++|+.++++.++. -+.++ ..+++.|...|...|++++|+.++++..+. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666666666655531 11121 345666666666677777776666655431 21 12 2455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 219 LLAMCADVGYTDEAFEIFEDMKS-----SENCQPD-SWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 219 li~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
|...|...|++++|+.++++..+ .|.-.|+ ..+.+.+-.++...+.+++|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777665432 2211232 23345555666677777777777777765
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.37 E-value=0.0023 Score=53.58 Aligned_cols=96 Identities=10% Similarity=0.049 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN--------M-----ITYNNLLDTMGRAKRPWQVKTIYKEMTDN--- 172 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--------~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 172 (533)
..+......+.+.|++++|+..|++..+. .|+ . ..|+.+-.++.+.|++++|+..|++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 44566667777888888888888887763 333 2 25666666666666666666666666542
Q ss_pred --CCCCC-HHHH----HHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 173 --GLSPN-WNTY----ASLLRAYGRARYGEDTLSVYREMKE 206 (533)
Q Consensus 173 --g~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~m~~ 206 (533)
.+.|+ ...| ...-.++...|++++|+..|++..+
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 01233 2344 4445555555555555555554443
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.34 E-value=0.0078 Score=49.31 Aligned_cols=84 Identities=8% Similarity=-0.095 Sum_probs=34.7
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSC- 261 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~- 261 (533)
.|...+.+++|.+.|++..+.| +...+..|-..|.. .+++++|++.|++..+.| +...+..|...|..
T Consensus 34 ~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 34 VSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN----DQDGCLILGYKQYAG 106 (138)
T ss_dssp HTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC----CHHHHHHHHHHHHCC
Confidence 3333334444444444444432 33334444444433 344444444444444322 23333444444444
Q ss_pred ---cCChHHHHHHHHHHHH
Q 009506 262 ---RGKVSEAEAMFNEMLE 277 (533)
Q Consensus 262 ---~g~~~~A~~~~~~m~~ 277 (533)
.+++++|.+.|++..+
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHH
Confidence 4444444444444443
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.34 E-value=0.0026 Score=52.28 Aligned_cols=113 Identities=10% Similarity=-0.044 Sum_probs=91.9
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHH
Q 009506 121 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR----ARYGED 196 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~ 196 (533)
.+++++|++.|++..+.| .++.. |-..|...+.+++|++.|++..+.| +...+..|-..|.. .+++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 357889999999998876 23333 6666667778888999999998875 67788888888887 789999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 009506 197 TLSVYREMKEKGMQLSVTLYNTLLAMCAD----VGYTDEAFEIFEDMKSSEN 244 (533)
Q Consensus 197 a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~ 244 (533)
|.+.|++..+.| +...+..|-..|.. .++.++|.+.|++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999998876 67778888888888 8899999999999888763
No 197
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.34 E-value=0.014 Score=60.37 Aligned_cols=176 Identities=6% Similarity=-0.003 Sum_probs=138.0
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 009506 121 AGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR----------PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGR 190 (533)
Q Consensus 121 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 190 (533)
....++|++.++++.... +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-.-.+.+
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334567899999998753 2245667776666666666 899999999999864 4577889888888888
Q ss_pred cC--ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-----
Q 009506 191 AR--YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-YTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR----- 262 (533)
Q Consensus 191 ~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~----- 262 (533)
.+ +++++++.++++.+.... +..+|+.-...+.+.| .++++++.++++.+.. .-|...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhccccc
Confidence 89 669999999999998766 8899999888888889 8999999999998865 56888888877776663
Q ss_pred ---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 009506 263 ---------GKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDD 302 (533)
Q Consensus 263 ---------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 302 (533)
+.++++.+.+++..... +-|...|+-+-..+.+.++.++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788999998877643 3457788887777777777444
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.33 E-value=0.0033 Score=52.58 Aligned_cols=62 Identities=16% Similarity=0.085 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-CHHHH----HHHHHHHHhcCChHHHHHHHHHHH
Q 009506 215 LYNTLLAMCADVGYTDEAFEIFEDMKSS----ENCQP-DSWTF----SSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 215 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p-~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
.|+.+..++.+.|++++|+..+++..+. +.+.| +...| .....++...|++++|...|++..
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444445555555555555554444432 00122 23344 444555555555555555555443
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00033 Score=54.64 Aligned_cols=92 Identities=12% Similarity=0.051 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------HH
Q 009506 213 VTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN-------LF 285 (533)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~ 285 (533)
...|..+...+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.|++..+.. |+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 3445555566666666666666666655543 3355566666666666666666666666655432 33 33
Q ss_pred HHHHHHHHHHhcCChhHHHHHHH
Q 009506 286 VLTSLIQCYGKAQRTDDVVRALN 308 (533)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~ 308 (533)
.+..+..++...|+.+.|...|+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHH
Confidence 44444445555555444444333
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.24 E-value=0.0016 Score=51.23 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 197 TLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 197 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
|+..|++..+.... +...+..+...|...|++++|++.|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444443222 34445555555555555555555555544432 2334455555555555555555555555543
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0023 Score=49.65 Aligned_cols=92 Identities=9% Similarity=0.004 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC------HHH
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPD------SWT 251 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~------~~~ 251 (533)
...+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|++.|++..+.. +.+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 445555666666666666666666666655332 55666666666777777777777776666542 122 344
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 009506 252 FSSMITICSCRGKVSEAEAMF 272 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~ 272 (533)
+..+..++...|+++.|.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 444555555555554444433
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.13 E-value=0.0052 Score=45.48 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=7.8
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 009506 254 SMITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~ 274 (533)
.+...|.+.|++++|.+.|++
T Consensus 48 ~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 48 NLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 333333333333333333333
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.13 E-value=0.002 Score=50.66 Aligned_cols=62 Identities=13% Similarity=-0.007 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 178 WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 178 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 240 (533)
...+..+...|.+.|++++|+..|++..+.... +...|..+...|...|++++|.+.|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444444444444444444443222 33444444444455555555555544443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.98 E-value=0.0083 Score=44.34 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 171 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (533)
.|..+...|.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|++.|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444444444444444444444321 11333444444444444444444444444443
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.84 E-value=0.0041 Score=47.63 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=9.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 181 YASLLRAYGRARYGEDTLSVYREMK 205 (533)
Q Consensus 181 ~~~ll~~~~~~g~~~~a~~~~~~m~ 205 (533)
+..+...|.+.|++++|+..|++..
T Consensus 10 ~~~lg~~~~~~g~~~~A~~~~~~al 34 (100)
T 3ma5_A 10 RYALAQEHLKHDNASRALALFEELV 34 (100)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.80 E-value=0.0056 Score=51.07 Aligned_cols=39 Identities=5% Similarity=-0.175 Sum_probs=18.9
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 120 TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRP 159 (533)
Q Consensus 120 ~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~ 159 (533)
+.+.+++|++.++...+.. +-+...|+.+-.++...+++
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~ 52 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQF 52 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhccc
Confidence 4445555555555554432 22445555555555554443
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.78 E-value=0.0059 Score=46.70 Aligned_cols=64 Identities=11% Similarity=0.121 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 212 SVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
+...+..+...|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55667777777777788888888887777654 34566777777777778888887777777654
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.71 E-value=0.0037 Score=52.16 Aligned_cols=94 Identities=9% Similarity=0.025 Sum_probs=46.5
Q ss_pred ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc
Q 009506 193 YGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY----------TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCR 262 (533)
Q Consensus 193 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (533)
.+++|.+.++...+.... +...|+.+..++...++ +++|+..|++..+.. +.+...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHh
Confidence 344444444444444322 44444444444444333 346666666655543 23455666666666554
Q ss_pred C-----------ChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 009506 263 G-----------KVSEAEAMFNEMLEAGFEPNLFVLTSLI 291 (533)
Q Consensus 263 g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~li 291 (533)
| ++++|.+.|++..+. .|+...|..-+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3 566666666665553 35544443333
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.70 E-value=0.084 Score=57.03 Aligned_cols=156 Identities=8% Similarity=0.018 Sum_probs=101.8
Q ss_pred HHHHHcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 116 KLYGTAGNFDGCLN-VYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYG 194 (533)
Q Consensus 116 ~~~~~~g~~~~A~~-~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 194 (533)
......+++++|.+ ++..+ ++......++..+.+.|.+++|+++.+.-. .-...+...|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 33446788888877 55221 212233777777888888888887663211 113445667888
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNE 274 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (533)
+.|.++.+.+ .+...|..+...+.+.|+++.|++.|..+.. |..+...|...|+.+...++-+.
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 8888876443 2667888888888888888888888887753 44566666667777766666555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009506 275 MLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 311 (533)
Q Consensus 275 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 311 (533)
....|- ++.-..+|.+.|++++|.+++.++.
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 555431 2334445666777777777776654
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.20 E-value=0.1 Score=56.32 Aligned_cols=134 Identities=7% Similarity=0.139 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRA 187 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 187 (533)
......++..+.+.|.+++|+++.++-. .-.......|++++|.++.+.+ .+...|..|...
T Consensus 629 ~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~ 690 (814)
T 3mkq_A 629 KDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDA 690 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHH
Confidence 3344788888899999999988774321 1133456789999999886543 577899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 009506 188 YGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSE 267 (533)
Q Consensus 188 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (533)
+.+.++++.|++.|..+.+ |..+...|...|+.+...++-+.....|. ++.....|.+.|++++
T Consensus 691 al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-------~~~A~~~~~~~g~~~~ 754 (814)
T 3mkq_A 691 SLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK-------FNLAFNAYWIAGDIQG 754 (814)
T ss_dssp HHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHH
T ss_pred HHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-------hHHHHHHHHHcCCHHH
Confidence 9999999999999998754 34455556667777777777666666553 3444555666677777
Q ss_pred HHHHHHHH
Q 009506 268 AEAMFNEM 275 (533)
Q Consensus 268 A~~~~~~m 275 (533)
|.+++.++
T Consensus 755 a~~~~~~~ 762 (814)
T 3mkq_A 755 AKDLLIKS 762 (814)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 76666543
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.13 E-value=0.068 Score=51.13 Aligned_cols=75 Identities=13% Similarity=0.056 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHH
Q 009506 246 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGC 324 (533)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 324 (533)
+.+..+|..+.-.+...|++++|...+++....+ |+...|..+-..+.-.|+.++|.+.|.+.... .|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 4567777777666676788888888888877764 67777767777777788888888888777664 466665543
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.99 E-value=0.023 Score=56.33 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhC--CCCCC---C-HHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cC-CCCC-HHHHHHHHHH
Q 009506 227 GYTDEAFEIFEDMKSS--ENCQP---D-SWTFSSMITICSCRGKVSEAEAMFNEMLE-----AG-FEPN-LFVLTSLIQC 293 (533)
Q Consensus 227 g~~~~A~~~~~~m~~~--~~~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~-~~~~~~li~~ 293 (533)
|++++|+.++++..+. ..+.| + ..+++.|..+|...|++++|+.++++..+ .| -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4566666666554321 11122 2 35566666777777777777776666543 12 1122 3456666777
Q ss_pred HHhcCChhHHHHHHHHhhh
Q 009506 294 YGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 294 ~~~~g~~~~a~~~~~~m~~ 312 (533)
|...|++++|..+|++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777766543
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.91 E-value=0.044 Score=54.37 Aligned_cols=64 Identities=5% Similarity=0.043 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 214 TLYNTLLAMCADVGYTDEAFEIFEDMKS-----SENCQPD-SWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
.+++.|...|...|++++|+.++++..+ .|.-.|+ ..+|+.|...|...|++++|+.+|++..+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4556666666666666666666655432 1211232 44566666666677777766666666543
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.90 E-value=0.077 Score=52.62 Aligned_cols=93 Identities=10% Similarity=-0.012 Sum_probs=61.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC--CCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCC----HHH
Q 009506 220 LAMCADVGYTDEAFEIFEDMKSSE--NCQPD----SWTFSSMITICSCRGKVSEAEAMFNEMLEA---GFEPN----LFV 286 (533)
Q Consensus 220 i~~~~~~g~~~~A~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~~ 286 (533)
+..+.+.|++++|++++++..+.. .+.|+ ..+++.|..+|...|++++|+.++++..+. -+.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445566778888888887776431 11222 456777888888888888888888776541 11122 456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 287 LTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777788888888888887777643
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.84 E-value=0.045 Score=54.28 Aligned_cols=94 Identities=10% Similarity=0.115 Sum_probs=73.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcC---CCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCC-HH
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKG---MQL----SVTLYNTLLAMCADVGYTDEAFEIFEDMKS-----SENCQPD-SW 250 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g---~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~p~-~~ 250 (533)
.+..+.+.|++++|+.++++..+.. +.+ ...+++.|...|...|++++|+.++++... .|.-.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3555667899999999999887631 111 356899999999999999999999987654 2222333 56
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 251 TFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
+++.|...|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 789999999999999999999988654
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.78 E-value=0.037 Score=41.63 Aligned_cols=56 Identities=14% Similarity=0.140 Sum_probs=30.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSW-TFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
..+.+.|++++|++.|++..+.. +.+.. .|..+..+|...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445556666666665555432 23444 5555555666666666666666665543
No 217
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.82 Score=38.55 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 009506 213 VTLYNTLLAMCADVGYTDEAFEIFEDM 239 (533)
Q Consensus 213 ~~~~~~li~~~~~~g~~~~A~~~~~~m 239 (533)
...|..|.......|+++-|++.|...
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444444444444444443
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.53 E-value=0.28 Score=46.91 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=45.6
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 009506 211 LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLT 288 (533)
Q Consensus 211 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 288 (533)
.+..+|..+...+...|++++|...+++.... .|+...|..+...+.-.|++++|.+.|++.... .|...+|.
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 35566666655555567777777777766664 356666666666666777777777777665553 35555543
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.53 E-value=0.058 Score=40.51 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=27.1
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVT-LYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
.+.+.|++++|...|++..+.... +.. .|..+..+|...|++++|++.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555544322 334 455555555555555555555555544
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.04 E-value=1.4 Score=37.23 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=55.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 118 YGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDT 197 (533)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 197 (533)
..+.|+++.|.++.+++ -+...|..|-....+.|+++-|.+.|.+... +..|.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34567777777766655 3556677777777777777777666665432 33444444455555554
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 009506 198 LSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFED 238 (533)
Q Consensus 198 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 238 (533)
.++-+.....| -+|.....+.-.|+++++.++|.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44443333332 133334444455666666666543
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.77 E-value=0.95 Score=41.55 Aligned_cols=94 Identities=12% Similarity=0.131 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CC
Q 009506 229 TDEAFEIFEDMKSSENCQPD---SWTFSSMITICSC-----RGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA-QR 299 (533)
Q Consensus 229 ~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~ 299 (533)
...|..++++..+. .|+ ...|..+...|.+ -|+.++|.+.|++..+.+-.-+..++....+.++.. |+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 46777888887774 454 6788899999988 499999999999988854212367777788888874 89
Q ss_pred hhHHHHHHHHhhhCCCC--CCHHHHHHH
Q 009506 300 TDDVVRALNRLPELGIT--PDDRFCGCL 325 (533)
Q Consensus 300 ~~~a~~~~~~m~~~g~~--p~~~~~~~l 325 (533)
.+++.+.+++....... |+....+.+
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 99999999999887766 665554443
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.63 E-value=1.3 Score=35.34 Aligned_cols=65 Identities=15% Similarity=0.129 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 009506 214 TLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGF 280 (533)
Q Consensus 214 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 280 (533)
...+..++.+...|.-+.-.+++.++.... +|+......+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~--~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILKNN--EVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhccC--CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344445555555555555555555543222 45555555555555555555555555555555553
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.54 E-value=0.86 Score=33.92 Aligned_cols=47 Identities=4% Similarity=-0.114 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
.++|..+|++..+.... +......+...+.+.|++++|++.|+.+.+
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444444322 344444444444444555555554444444
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.89 E-value=0.32 Score=40.01 Aligned_cols=78 Identities=10% Similarity=0.037 Sum_probs=33.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRAR---YGEDTLSVYREMKEKGMQL--SVTLYNTLLAMCADVGYTDEAFEIF 236 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~ 236 (533)
+.+-|.+..+.|. ++..+.-.+.-++++.+ +.++++.+|++..+.+ .| ....+-.|--+|.+.|++++|.+.+
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 3333444333332 44444444444444444 3334555555444442 11 1222233333445555555555555
Q ss_pred HHHHh
Q 009506 237 EDMKS 241 (533)
Q Consensus 237 ~~m~~ 241 (533)
+.+.+
T Consensus 95 ~~lL~ 99 (152)
T 1pc2_A 95 RGLLQ 99 (152)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55444
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.78 E-value=0.45 Score=39.11 Aligned_cols=82 Identities=7% Similarity=-0.069 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHhcCChHHH
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG---YTDEAFEIFEDMKSSENCQP--DSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 268 (533)
+..+++-|.+..+.|. ++..+...+..++++.+ +.++++.+|++..+.. .| ....+-.|.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHH
Confidence 3445555655555554 46666666777777776 5567888887776653 23 344455566666777777777
Q ss_pred HHHHHHHHHc
Q 009506 269 EAMFNEMLEA 278 (533)
Q Consensus 269 ~~~~~~m~~~ 278 (533)
.+.++.+.+.
T Consensus 91 ~~y~~~lL~i 100 (152)
T 1pc2_A 91 LKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 7777777763
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.75 E-value=2.1 Score=34.13 Aligned_cols=138 Identities=12% Similarity=0.040 Sum_probs=76.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 009506 156 AKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEI 235 (533)
Q Consensus 156 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 235 (533)
.|..++..++..+.... .+..-||.+|--....-+-+-..++++.+-.. .|. ..+|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 45555556666555542 24444444444444444444444444333221 111 123444444443
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC
Q 009506 236 FEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGI 315 (533)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 315 (533)
+-.+ ..+.......++.....|.-++-.+++..+.. +-+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 84 ~~~~------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHh------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3332 23445556667777777777777777777533 2356777777777788888888888888777777775
Q ss_pred C
Q 009506 316 T 316 (533)
Q Consensus 316 ~ 316 (533)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.74 E-value=0.39 Score=35.83 Aligned_cols=65 Identities=15% Similarity=0.030 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 212 SVTLYNTLLAMCADVGY---TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEA 278 (533)
Q Consensus 212 ~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (533)
|...+..+..++...++ .++|..+|++..+.. +-+......+...+.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444444444432222 455555555555543 334555555555555555555555555555543
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.61 E-value=0.7 Score=35.12 Aligned_cols=66 Identities=9% Similarity=-0.063 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG------VKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD 171 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 171 (533)
.++.-+..|...+.+.|++..|...|+...+.- -......+..|..++.+.|+++.|+..+++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 345556667777777777777777777765420 123445666666666777777777777766665
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.45 E-value=0.81 Score=34.75 Aligned_cols=65 Identities=8% Similarity=-0.096 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 143 MITYNNLLDTMGRAKRPWQVKTIYKEMTDNG------LSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 143 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
..-+..|...+.+.+++..|...|+...+.- -.+...++..|..+|.+.|+++.|...+++..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3344455566666666666666666554320 1133445555555555666666666555555544
No 230
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=93.22 E-value=0.23 Score=36.13 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=49.7
Q ss_pred eecccccChhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeeccccccc-hhHHHHHHHHhhhcCCCCCCCCCCcceEE
Q 009506 429 SLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD-KGLASVFESHLKELNAPFHDSPDKVGWFL 507 (533)
Q Consensus 429 ~~~l~~~~~g~~~~a~~~~~~~l~~~~~~g~~~p~~~~i~~~~~~~~~~~-~~l~~~~~~~L~~~~~~f~~~~~~~g~~~ 507 (533)
+++++++....|...+..++.+.....+.....+ .+.|++|.|.|+... .-++..+.+.|.+-.-.|.+ .|.|++.
T Consensus 2 ~lDLHGl~v~eA~~~l~~~l~~~~~~~~~~~g~~-~v~II~GkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e--~n~G~l~ 78 (82)
T 3fau_A 2 SLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKP-YLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSE--IKPGCLK 78 (82)
T ss_dssp CEECTTSCHHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCC---------CHHHHHHHHHHHTTCCEEE--EETTEEE
T ss_pred eEECCCCcHHHHHHHHHHHHHHHHHHhhccCCce-EEEEEECCCCCCCCCcchHHHHHHHHHHhCCCceee--CCCEEEE
Confidence 3688999999998888887765543222212233 578999999987531 23899999999998766653 5788876
Q ss_pred E
Q 009506 508 T 508 (533)
Q Consensus 508 ~ 508 (533)
.
T Consensus 79 V 79 (82)
T 3fau_A 79 V 79 (82)
T ss_dssp E
T ss_pred E
Confidence 4
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.28 E-value=0.93 Score=41.61 Aligned_cols=91 Identities=10% Similarity=-0.013 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-C
Q 009506 124 FDGCLNVYEEMKAIGVKPN---MITYNNLLDTMGRA-----KRPWQVKTIYKEMTDNGLSP--NWNTYASLLRAYGRA-R 192 (533)
Q Consensus 124 ~~~A~~~~~~m~~~g~~pd---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~-g 192 (533)
...|..++++..+ +.|+ -..|..|...|.+. |+.++|.+.|++.++.. | +..++......+++. |
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln--P~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC--SAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC--CTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHHhcC
Confidence 4566666766666 3455 45677777777774 78888888888877743 4 366777777777774 7
Q ss_pred ChHHHHHHHHHHHHcCCC--cCHHHHHH
Q 009506 193 YGEDTLSVYREMKEKGMQ--LSVTLYNT 218 (533)
Q Consensus 193 ~~~~a~~~~~~m~~~g~~--~~~~~~~~ 218 (533)
+.+++.+.+++....... |+....|.
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 788888888877777665 55444443
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.70 E-value=3.2 Score=33.78 Aligned_cols=103 Identities=9% Similarity=0.079 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH-HHHHHHH------HHHhcCChhHHHHHHHHHHHC
Q 009506 106 IDPNAFSTLIKLYGTAGNF------DGCLNVYEEMKAIGVKPNMI-TYNNLLD------TMGRAKRPWQVKTIYKEMTDN 172 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~pd~~-~~~~li~------~~~~~g~~~~a~~~~~~m~~~ 172 (533)
-|..+|-..+...-+.|+. ++.+++|++.... ++|+.. .|..-|. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3677777777777777877 7777888777653 444421 0111110 012235666666666666543
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 009506 173 GLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQ 210 (533)
Q Consensus 173 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 210 (533)
.-.. ...|......=.+.|++..|.+++......+..
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 2122 455555555555666666666666666665554
No 233
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=91.47 E-value=1.2 Score=33.28 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=56.8
Q ss_pred eeecccccChhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeeccccccc-hhHHHHHHHHhhhcCCCCCCCCCCcceE
Q 009506 428 WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD-KGLASVFESHLKELNAPFHDSPDKVGWF 506 (533)
Q Consensus 428 ~~~~l~~~~~g~~~~a~~~~~~~l~~~~~~g~~~p~~~~i~~~~~~~~~~~-~~l~~~~~~~L~~~~~~f~~~~~~~g~~ 506 (533)
..++++++....|...+..++.............+ .+.|++|.|.|+... .-++..+.+.|.+....|. ..+.|.+
T Consensus 9 ~~lDLHGl~v~eA~~~L~~~L~~~~~~~~~~~g~~-~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~--egg~Ga~ 85 (96)
T 2d9i_A 9 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKP-YLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFS--EIKPGCL 85 (96)
T ss_dssp CEEECTTSCHHHHHHHHHHHHHHHHHHHHHTTCCS-EEEEECCCSGGGTTCTTCHHHHHHHHHHHTTCCEE--CCSTTCE
T ss_pred CeEECCCCCHHHHHHHHHHHHHHHHHHHHhhCCCe-EEEEEECcCCCCCCCcchHHHHHHHHHhhCCCccc--cCCCcEE
Confidence 46799999999999999888776553333222233 689999999987543 3488999999999876664 3467777
Q ss_pred EE
Q 009506 507 LT 508 (533)
Q Consensus 507 ~~ 508 (533)
+.
T Consensus 86 ~V 87 (96)
T 2d9i_A 86 KV 87 (96)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.87 E-value=3.8 Score=33.34 Aligned_cols=100 Identities=11% Similarity=0.147 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCHH-HHHHHHHHH------HhcCChHHHHHHHHHHHHc
Q 009506 141 PNMITYNNLLDTMGRAKRP------WQVKTIYKEMTDNGLSPNWN-TYASLLRAY------GRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~------~~~g~~~~a~~~~~~m~~~ 207 (533)
-|..+|=..+...-+.|++ ++.+++|++.... ++|+.. .|...|..+ ...++.++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3556666666666666777 6777777777653 445421 111111111 1224555555555555443
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 208 GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 208 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
+-.- ...|-....--.+.|++..|.+++......
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 2221 334443334444455555555555554443
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.65 E-value=1.7 Score=45.84 Aligned_cols=125 Identities=10% Similarity=0.064 Sum_probs=79.8
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCC-hHHHHHHHHHHHHc------CCC-cCHH-
Q 009506 147 NNLLDTMGRAKR-PWQVKTIYKEMTDNGLSPNWNT--YASLLRAYGRARY-GEDTLSVYREMKEK------GMQ-LSVT- 214 (533)
Q Consensus 147 ~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~g~-~~~a~~~~~~m~~~------g~~-~~~~- 214 (533)
..|+..+...++ .+.|+.+|+++.+.. |...+ ..+++..+.+.++ --+|.+++.+..+. ... .+..
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344555555666 577999999998764 43322 2334444444332 22344444443321 111 1211
Q ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 009506 215 ---------LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEM 275 (533)
Q Consensus 215 ---------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (533)
..+.-.+-+...|+++.|+++-++....- +-+-.+|..|..+|.+.|+++.|+-.++.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12222345677899999999999988753 456899999999999999999999999886
No 236
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.02 E-value=1.8 Score=34.19 Aligned_cols=20 Identities=5% Similarity=-0.021 Sum_probs=8.7
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 009506 222 MCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m~~ 241 (533)
++.+.|++++|.+.++.+.+
T Consensus 83 g~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHH
Confidence 34444444444444444433
No 237
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=88.91 E-value=1.7 Score=34.90 Aligned_cols=78 Identities=21% Similarity=0.254 Sum_probs=56.1
Q ss_pred eeecccccChhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeeccccccc-hhHHHHHHHHhhhcCCCCCCCCCCcceE
Q 009506 428 WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSD-KGLASVFESHLKELNAPFHDSPDKVGWF 506 (533)
Q Consensus 428 ~~~~l~~~~~g~~~~a~~~~~~~l~~~~~~g~~~p~~~~i~~~~~~~~~~~-~~l~~~~~~~L~~~~~~f~~~~~~~g~~ 506 (533)
..++++++....+...+..++.............+ .+.|++|.|.|+... .-|+..|...|.+..-.|.+ .+.|.+
T Consensus 54 ~~LDLHGl~v~EA~~~L~~fL~~a~~~~~~~~g~~-~v~IIhGkG~hS~~g~~~Lk~~V~~~L~~~~~~~~e--~g~G~~ 130 (135)
T 2vkc_A 54 NVLDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKP-YLSVITGRGNHSQGGVARIKPAVIKYLISHSFRFSE--IKPGCL 130 (135)
T ss_dssp TEEECTTCCHHHHHHHHHHHHHHHHHHHHHTCCCS-EEEEECCSCSSSCCSCCTHHHHHHHHHHTTTCEEEE--CSTTEE
T ss_pred ceEEeCCCcHHHHHHHHHHHHHHHHHHHHhhCCCe-EEEEEECCCcCCCCCCchHHHHHHHHHhcCCCceee--CCCCeE
Confidence 46799999999999999888766543333222343 688999999987543 34788999999987765543 366776
Q ss_pred EE
Q 009506 507 LT 508 (533)
Q Consensus 507 ~~ 508 (533)
+.
T Consensus 131 ~V 132 (135)
T 2vkc_A 131 KV 132 (135)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.77 E-value=6.4 Score=38.06 Aligned_cols=73 Identities=19% Similarity=0.151 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCcCHHHHHH
Q 009506 145 TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKE-----KGMQLSVTLYNT 218 (533)
Q Consensus 145 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~ 218 (533)
....++.++...|++++++..+..+.... +.+...|..+|.+|.+.|+..+|++.|+.+.+ .|+.|+..+-..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 45667788888999999998888887653 56888999999999999999999999887654 588888765443
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.64 E-value=5.1 Score=42.32 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=81.3
Q ss_pred HHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCC-hhHHHHHHHHHHHC------CCCC-CHH
Q 009506 111 FSTLIKLYGTAGN-FDGCLNVYEEMKAIGVKPNMIT--YNNLLDTMGRAKR-PWQVKTIYKEMTDN------GLSP-NWN 179 (533)
Q Consensus 111 ~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~~--~~~li~~~~~~g~-~~~a~~~~~~m~~~------g~~p-~~~ 179 (533)
-..|+..+...|+ ++.|+.+|+++.... |...+ ...+|..+...++ --+|.+++.+..+. ...+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3445555555556 588999999998753 43333 2333333333332 22355555554421 1111 111
Q ss_pred ----------HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 180 ----------TYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 180 ----------~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 240 (533)
..+.=.+.+...|+++.|+++-++....-.. +-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222244566789999999999998887433 68899999999999999999999998874
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.98 E-value=2.3 Score=41.22 Aligned_cols=72 Identities=21% Similarity=0.219 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh-----CCCCCCHHHHHH
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE-----LGITPDDRFCGC 324 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 324 (533)
...++..+...|++++|...+..+.... +-+...|..+|.+|.+.|+..+|++.|+++.+ .|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3455667777788888887777766542 34677788888888888888888888777643 588888876553
No 241
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.25 E-value=6.4 Score=31.00 Aligned_cols=82 Identities=10% Similarity=0.009 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCC--CHHHHHHHHHHHHhcCChHHH
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDE---AFEIFEDMKSSENCQP--DSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 268 (533)
+..+.+-|.+....|. ++..+--.+..++.+..+... ++.+++++.+.+ .| .....-.|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445555555555454 466666666667777765554 788888777654 23 333444566677888888888
Q ss_pred HHHHHHHHHc
Q 009506 269 EAMFNEMLEA 278 (533)
Q Consensus 269 ~~~~~~m~~~ 278 (533)
.+.++.+.+.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887774
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.91 E-value=2.7 Score=31.42 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=33.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 158 RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 158 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
+.-+..+-++.+....+.|++.+..+.+++|.|.+++..|.++|+-++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455666666666666677777777777777777777777777766654
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.87 E-value=23 Score=33.17 Aligned_cols=24 Identities=4% Similarity=-0.139 Sum_probs=15.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 390 CLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 390 ~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
-.+--|.-.++...|..+++...+
T Consensus 192 RaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 192 RAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 334446667788888777666543
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.44 E-value=5.5 Score=29.81 Aligned_cols=50 Identities=12% Similarity=0.184 Sum_probs=30.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC
Q 009506 264 KVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPEL 313 (533)
Q Consensus 264 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 313 (533)
|.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555555555566666666666666666666666666666666543
No 245
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=85.03 E-value=0.008 Score=58.96 Aligned_cols=262 Identities=11% Similarity=0.020 Sum_probs=147.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 107 DPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 107 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
.+.+|..|..++.+.+++.+|++-|-+ . -|...|..+|.++.+.|.+++-++.+.-.++.. -+..+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--A----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--C----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--C----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHH
Confidence 355688888888888888888877722 1 466678889999999999998888776555442 34455578889
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChH
Q 009506 187 AYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVS 266 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (533)
+|++.+++.+.++++. .|+..-...+.+-|...|.++.|.-+|..+..- .-|...+.+.|++.
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~----------akLAstLV~L~~yq 187 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF----------GRLASTLVHLGEYQ 187 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC----------TTTSSSSSSCSGGG
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccH----------HHHHHHHHHHHHHH
Confidence 9999888776544432 256666667777888888888887777655432 12222333444444
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 009506 267 EAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK-EELGKLVECVE 345 (533)
Q Consensus 267 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~a~~~~~~~~ 345 (533)
.|.+.-++ .-++.||-.+-.+|...+.+..|...--.++-. +| ....|+..|-..|. ++...+++.-.
T Consensus 188 ~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 188 AAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAAL 256 (624)
T ss_dssp SSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHT
T ss_pred HHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 44332111 134455555555665555555444433222211 11 11224444555555 55555555544
Q ss_pred hcCCChhHHHHHHHHhhhhhccHHHHHHHHHh----hhccC------ccchhhHHHHHHHHhcCCHHHHHH
Q 009506 346 KSNSKLGYVVKLLLEEQDIEGDFKKEATELFN----SISKD------VKKAYCNCLIDLCVNLNLLENACK 406 (533)
Q Consensus 346 ~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~----~~~~~------~~~~~~~~li~~~~~~g~~~~A~~ 406 (533)
......-.+.+-|+..|++-. .++..+.++ ++... .....|..++-.|.+-..++.|..
T Consensus 257 glErAHmGmFTELaILYsKY~--PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 257 GLERAHMGMFTELAILYSKFK--PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TSTTCCHHHHHHHHHHHHSSC--TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred CCCchhHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 333333334444444444432 122222222 22211 123367777777877777776643
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=83.92 E-value=52 Score=35.62 Aligned_cols=256 Identities=11% Similarity=0.008 Sum_probs=118.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChhHHHHHHHHHHHCC--CC-----CCHHHHHHHHHHHH
Q 009506 119 GTAGNFDGCLNVYEEMKAIGVKPNMITYN--NLLDTMGRAKRPWQVKTIYKEMTDNG--LS-----PNWNTYASLLRAYG 189 (533)
Q Consensus 119 ~~~g~~~~A~~~~~~m~~~g~~pd~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g--~~-----p~~~~~~~ll~~~~ 189 (533)
...|+.++++.+++.....+-..+..+-. .+--+....|..+++..++...+... +. +....-.++--+++
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 34556666666555543211012322222 22233445565556777666655421 00 11111222222222
Q ss_pred hcCC-hHHHHHHHHHHHHcCCCcCHHH-HH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCh
Q 009506 190 RARY-GEDTLSVYREMKEKGMQLSVTL-YN--TLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKV 265 (533)
Q Consensus 190 ~~g~-~~~a~~~~~~m~~~g~~~~~~~-~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 265 (533)
-.|. -+++.+.+..+....- .... .. +|...++-.|+-+....++..+.+.. .-+..-+..+.-++...|+.
T Consensus 465 ~~GS~~eev~e~L~~~L~dd~--~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 465 AMGSANIEVYEALKEVLYNDS--ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp STTCCCHHHHHHHHHHHHTCC--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCG
T ss_pred hcCCCCHHHHHHHHHHHhcCC--HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCCh
Confidence 2332 2345555555544311 1111 11 22233445577777777777766532 12222223333344467888
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHH---HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHh--cCCh-HHHH
Q 009506 266 SEAEAMFNEMLEAGFEPNLF-VLT---SLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMT--QTPK-EELG 338 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~~~-~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~-~~a~ 338 (533)
+.+..+.+.+... .+.. -|. ++.-+|+..|+.....+++..+.+. ++..+-...+-+++ ..|. +.+.
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 8888888877653 2322 222 3344566777877777788777654 23333333333333 3455 5555
Q ss_pred HHHHHHHhcCCChhHHH--HHHHHhhhhhccHHHHHHHHHhhhccCccch
Q 009506 339 KLVECVEKSNSKLGYVV--KLLLEEQDIEGDFKKEATELFNSISKDVKKA 386 (533)
Q Consensus 339 ~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~ 386 (533)
++++.+.+......... -.|+..+...++ .++.+++..+..+.+..
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGL--QSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--HHHHHHHHHHHTCSSHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--HHHHHHHHHHccCCCHH
Confidence 66655444332222222 333333333332 56777777766544433
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.41 E-value=7.5 Score=30.82 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 009506 159 PWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK 207 (533)
Q Consensus 159 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 207 (533)
.-+..+-++.+....+.|++.+..+.+++|.|.+++..|.++|+-.+.+
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3345556666666667777777777777777777777777777776654
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.87 E-value=33 Score=31.82 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=12.6
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 009506 394 LCVNLNLLENACKLLELGL 412 (533)
Q Consensus 394 ~~~~~g~~~~A~~l~~~m~ 412 (533)
-|.-.|+...|..+|+...
T Consensus 197 ~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 197 NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHTTBHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHH
Confidence 4556677777777777653
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.17 E-value=8.7 Score=30.46 Aligned_cols=62 Identities=11% Similarity=0.203 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLN 327 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 327 (533)
.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-++.+ +.+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3345555555555666777777777777777777777777777766543 2223334554443
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.97 E-value=44 Score=32.77 Aligned_cols=172 Identities=7% Similarity=0.067 Sum_probs=104.2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH----HhcCChhHH--HHHHHHHH--HCC-
Q 009506 104 WRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKA-IGVKPNMITYNNLLDTM----GRAKRPWQV--KTIYKEMT--DNG- 173 (533)
Q Consensus 104 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~~~~~li~~~----~~~g~~~~a--~~~~~~m~--~~g- 173 (533)
...+......++..|.+.|+++...+.+.-+.. +|..+.. -..++..+ ......+.- ..+.+... ..|
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~k 129 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENK 129 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccc
Confidence 455788888999999999999998888776654 3332222 23344333 223332221 11111111 011
Q ss_pred CCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---C
Q 009506 174 LSP---NWNTYASLLRAYGRARYGEDTLSVYREMKEK--GMQLS---VTLYNTLLAMCADVGYTDEAFEIFEDMKS---S 242 (533)
Q Consensus 174 ~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~ 242 (533)
+-. .......|...|-..|++.+|..++.++... |.... +..|...+..|...+++..|..++..+.. .
T Consensus 130 iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~ 209 (445)
T 4b4t_P 130 IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK 209 (445)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc
Confidence 111 1233456778888889999998888887542 22111 34666777888888888888888877642 1
Q ss_pred CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 243 ENCQPD--SWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 243 ~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
....|+ ...|...+..+...+++.+|.+.|.+..+
T Consensus 210 ~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 210 NPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 111232 34566777788888888888888777654
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=76.84 E-value=57 Score=36.49 Aligned_cols=149 Identities=9% Similarity=-0.045 Sum_probs=89.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------------------hC
Q 009506 183 SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK--------------------SS 242 (533)
Q Consensus 183 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------------------~~ 242 (533)
.++..+.+.+..+.+.++...... +...--.+..+|...|++++|.+.|++.. ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 355556666666666554433221 33333344556667777777777775431 11
Q ss_pred -CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 009506 243 -ENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPN----LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITP 317 (533)
Q Consensus 243 -~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 317 (533)
.....-..-|..++..+-+.+.++.+.++-....+..-.-+ ...|..++.++...|++++|...+..+.+...+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 00122345677888888888888888877766555321112 125777888888888888888888877765443
Q ss_pred CHHHHHHHHHHHhcCCh-HHHH
Q 009506 318 DDRFCGCLLNVMTQTPK-EELG 338 (533)
Q Consensus 318 ~~~~~~~ll~~~~~~~~-~~a~ 338 (533)
......|+..++..+. ....
T Consensus 971 -~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhhh
Confidence 4566667776766555 4433
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.70 E-value=59 Score=31.84 Aligned_cols=188 Identities=11% Similarity=0.139 Sum_probs=118.2
Q ss_pred CChHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHH----Hhc
Q 009506 122 GNFDGCLNVYEEMKAI-----GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTD-NGLSPNWNTYASLLRAY----GRA 191 (533)
Q Consensus 122 g~~~~A~~~~~~m~~~-----g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~----~~~ 191 (533)
|+++.|++.+-.+.+. ...-.......++..|...++++...+.+..+.. +|..+ .....+++.+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 5678888777665532 2344567788899999999999998887776654 34322 2233444333 223
Q ss_pred CChHHH--HHHHHHHH---HcCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCC----HHHHHHHHHH
Q 009506 192 RYGEDT--LSVYREMK---EKGMQL---SVTLYNTLLAMCADVGYTDEAFEIFEDMKSS-ENCQPD----SWTFSSMITI 258 (533)
Q Consensus 192 g~~~~a--~~~~~~m~---~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p~----~~~~~~li~~ 258 (533)
...+.. ..+.+.+. +..+-. .......|...|...|++.+|.+++..+... .. ..+ ...|..-++.
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~-~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYG-SMEMSEKIQFILEQMEL 186 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-SSCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHH
Confidence 333221 11111111 111111 2234456778899999999999999887642 11 112 4567778899
Q ss_pred HHhcCChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 259 CSCRGKVSEAEAMFNEMLE----AGFEPN--LFVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 259 ~~~~g~~~~A~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
|...+++..|..++++... ....|+ ...|..++..+...+++.+|.+.|.+..+
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 9999999999999988642 222222 23466677778888999999888887754
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.61 E-value=52 Score=36.86 Aligned_cols=171 Identities=12% Similarity=0.111 Sum_probs=101.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 192 (533)
.++..+.+.+.++.|.++..... -+...--.+..+|...|++++|.+.|++.- .|+..+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~----------~ 880 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQF----------A 880 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSC----------S
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhh----------h
Confidence 45566667777777766554432 344433345556777788888888776542 1221111000 0
Q ss_pred ChHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCC--HHHHHHHHHHHHhcCChHH
Q 009506 193 YGEDTLSVYREMKEKG--MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC-QPD--SWTFSSMITICSCRGKVSE 267 (533)
Q Consensus 193 ~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~--~~~~~~li~~~~~~g~~~~ 267 (533)
.... +..+.... ...-..-|..++..+-+.+.++.+.++-+...+...- .++ ...|..+.+.+...|++++
T Consensus 881 ~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 0000 11111111 1123345778888888888888888777665443210 111 2257888999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 009506 268 AEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVR 305 (533)
Q Consensus 268 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 305 (533)
|...+-.+..... -......||..+|..|..+.-..
T Consensus 957 Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 957 AHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp GGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhC
Confidence 9999988877543 35667788888888887766554
No 254
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=74.54 E-value=39 Score=28.70 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=7.8
Q ss_pred CCHHHHHHHHHHHHhcCC
Q 009506 282 PNLFVLTSLIQCYGKAQR 299 (533)
Q Consensus 282 p~~~~~~~li~~~~~~g~ 299 (533)
++..+-...+.++.+.+.
T Consensus 155 ~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 155 EDGWVRQSAADALGEIGG 172 (211)
T ss_dssp SSHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344444444444444443
No 255
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=72.35 E-value=1.1e+02 Score=33.05 Aligned_cols=224 Identities=12% Similarity=0.014 Sum_probs=123.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCC--C-----CCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHH--H
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGV--K-----PNMITYNNLLDTMGRAKRP-WQVKTIYKEMTDNGLSPNWNT--Y 181 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~--~-----pd~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~--~ 181 (533)
..+.-+....|..++++.++.......- . +.+..-.+|--+++-.|.- +++.+.+..+.... +..+ .
T Consensus 415 AllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~ 491 (963)
T 4ady_A 415 SLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEA 491 (963)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHH
Confidence 3444455667777778887776554210 0 1111122222233334432 45677777766532 2221 2
Q ss_pred H--HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHH---HHH
Q 009506 182 A--SLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFS---SMI 256 (533)
Q Consensus 182 ~--~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~---~li 256 (533)
. +|-..|.-.|+-+....++..+.+.. .-+..-.-.+.-++...|+.+.+..+++.+.... .| ..-|. ++.
T Consensus 492 AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~--dp-~vRygaa~alg 567 (963)
T 4ady_A 492 AALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD--ES-LLRYGGAFTIA 567 (963)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS--CH-HHHHHHHHHHH
T ss_pred HHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC--CH-HHHHHHHHHHH
Confidence 2 22333456677777788888776642 1122222233344557789999999999888743 23 23333 334
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh
Q 009506 257 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQ--CYGKAQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334 (533)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 334 (533)
-+|+..|+.....+++..+.+. ++..+-...+. ++...|+.+.+.+++..+.+.+ .|....-..+.-+....|.
T Consensus 568 lAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn 643 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGK 643 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSS
T ss_pred HHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCC
Confidence 5677888988888899988764 33333333333 4445677778888888777654 3444433333333333443
Q ss_pred --HHHHHHHHHHHh
Q 009506 335 --EELGKLVECVEK 346 (533)
Q Consensus 335 --~~a~~~~~~~~~ 346 (533)
.++...+..+..
T Consensus 644 ~~~~aid~L~~L~~ 657 (963)
T 4ady_A 644 GLQSAIDVLDPLTK 657 (963)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHcc
Confidence 677777776654
No 256
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.49 E-value=70 Score=29.88 Aligned_cols=168 Identities=13% Similarity=0.101 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH----HHHHHHHCCCCCCHHHHHHH
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT----IYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~~~~~l 184 (533)
.+|-++..-|.+.+++++|++++-.-.. .+.+.|+...|-+ +++-..+.++++|......|
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4678888889999999999988754321 1234455544333 34555567788888888888
Q ss_pred HHHHHhcCChH-HHHHHHHHHHH----cC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 009506 185 LRAYGRARYGE-DTLSVYREMKE----KG--MQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMIT 257 (533)
Q Consensus 185 l~~~~~~g~~~-~a~~~~~~m~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~ 257 (533)
+..+.....-+ .-..+.+++.+ .| ..-|......+...|.+.+++.+|+..|= .|. .+....|..++-
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~-~~s~~~~a~mL~ 175 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGT-KESPEVLARMEY 175 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSC-TTHHHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcC-CchHHHHHHHHH
Confidence 88887765432 12334444432 22 33467777788889999999999988872 232 333356655554
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 009506 258 ICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLP 311 (533)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 311 (533)
-+...+...++ +.+.-.+++ -|.-.++...|..+|....
T Consensus 176 ew~~~~~~~e~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 176 EWYKQDESHTA--------------PLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHTSCGGGH--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCccH--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 44443332222 222222233 2344566676766555543
No 257
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=69.96 E-value=0.0016 Score=63.76 Aligned_cols=213 Identities=15% Similarity=0.173 Sum_probs=125.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLL 185 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 185 (533)
-|+..|..+|....+.|.+++-++.+...++.. .+...=+.|+-+|++.++..+..+++. .||..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHH
Confidence 378889999999999999999999987766543 344455699999999999877554432 47877778889
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCC--------------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 009506 186 RAYGRARYGEDTLSVYREMKEKGM--------------------QLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENC 245 (533)
Q Consensus 186 ~~~~~~g~~~~a~~~~~~m~~~g~--------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 245 (533)
+-|...|.++.|.-+|..+....- .-++.||-.+-.+|...+++.-|.-.--.+.-.
T Consensus 152 Drcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh--- 228 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH--- 228 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---
T ss_pred HHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---
Confidence 999999999999888876533110 113445555555555555544443333333321
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh-CCCCCCHHHHHH
Q 009506 246 QPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPE-LGITPDDRFCGC 324 (533)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~ 324 (533)
+| -...++..|-..|.+++-..+++.-... -+...-.|+-|.-.|++- +.++..+-++..-. .++. -
T Consensus 229 -ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNip-------K 296 (624)
T 3lvg_A 229 -AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIP-------K 296 (624)
T ss_dssp -SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCT-------T
T ss_pred -HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHH-------H
Confidence 11 1123444455555555555555543311 123455666666666554 33444333333211 1221 2
Q ss_pred HHHHHhcCCh-HHHHHHHH
Q 009506 325 LLNVMTQTPK-EELGKLVE 342 (533)
Q Consensus 325 ll~~~~~~~~-~~a~~~~~ 342 (533)
+|++|.+... .++.-++.
T Consensus 297 viracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 297 VLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp THHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHh
Confidence 6666666655 55555444
No 258
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=68.89 E-value=56 Score=30.90 Aligned_cols=204 Identities=11% Similarity=0.060 Sum_probs=99.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR--PWQVKTIYKEMTDNGLSPNWNTYASLLRAY 188 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 188 (533)
...+|.-|...|+.++|...++++..... .......+|......++ .+.+-.++..+.. ++-+.......+...+
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~--~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll 133 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLL 133 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGG--GGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchh--HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 56789999999999999999999853211 11222233333222222 2335555665553 5544445444444444
Q ss_pred HhcCCh----HHHHHHHHHH----HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------------h----CC
Q 009506 189 GRARYG----EDTLSVYREM----KEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK-------------S----SE 243 (533)
Q Consensus 189 ~~~g~~----~~a~~~~~~m----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------------~----~~ 243 (533)
....++ -.|..++..+ ...++-|-......... . .-+.+.++++... + -+
T Consensus 134 e~ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~----~-~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~ 208 (358)
T 3eiq_C 134 KDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGT----V-DCVQARAALDKATVLLSMSKGGKRKDSVWGSGG 208 (358)
T ss_dssp HTHHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC--------CCHHHHHHHHHHHHHHTC---------CCCCCC
T ss_pred HhhhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhc----c-cchHHHHHHHHHHHHHhccchHHHHHHhcCCCC
Confidence 333322 1233333222 22222211111000000 0 0111222221111 1 01
Q ss_pred CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCCC
Q 009506 244 NCQPD---SWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR--TDDVVRALNRLPELGITPD 318 (533)
Q Consensus 244 ~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~ 318 (533)
...|. ....+.+|.-|...|+.++|.+.++++..-.+ -...+...+..++-+.++ .+.+.+++..+...|+-+.
T Consensus 209 ~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~ 287 (358)
T 3eiq_C 209 GQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 287 (358)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred CCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCH
Confidence 11121 22357888888888999999999988753111 124445566666665433 3556777777777766554
Q ss_pred HHHHH
Q 009506 319 DRFCG 323 (533)
Q Consensus 319 ~~~~~ 323 (533)
.....
T Consensus 288 ~q~~~ 292 (358)
T 3eiq_C 288 DQMKR 292 (358)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 259
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=68.47 E-value=8.9 Score=34.48 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=13.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhccccCCc
Q 009506 392 IDLCVNLNLLENACKLLELGLTLEVYTDI 420 (533)
Q Consensus 392 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~ 420 (533)
+....+.|+.+ +++.+.+.|..++.
T Consensus 257 l~~A~~~~~~~----i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 257 LLLAVELKLKK----IAELLCKRGASTDC 281 (285)
T ss_dssp HHHHHHTTCHH----HHHHHHHHSSCSCC
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCCCc
Confidence 34445566654 34444556665554
No 260
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=68.16 E-value=60 Score=31.22 Aligned_cols=127 Identities=10% Similarity=0.024 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCC---HHHHHHHHHHHhcCCh--HHHHH-HHHHHHhcCCChhHHH---
Q 009506 286 VLTSLIQCYGKAQRTDDVVRALNRLPEL-GITPD---DRFCGCLLNVMTQTPK--EELGK-LVECVEKSNSKLGYVV--- 355 (533)
Q Consensus 286 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~---~~~~~~ll~~~~~~~~--~~a~~-~~~~~~~~~~~~~~~~--- 355 (533)
....|...|.+.|+.++..+++...... +.-+. ......++..+..... +...+ ..+++.+...+.-.++
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777766432 11122 2246667777776554 33333 3455555554433443
Q ss_pred --HHHHHhhhhhccHHHHHHHHHhhhcc----Ccc----chhhHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 356 --KLLLEEQDIEGDFKKEATELFNSISK----DVK----KAYCNCLIDLCVNLNLLENACKLLELGLT 413 (533)
Q Consensus 356 --~~l~~~~~~~g~~~~~a~~~~~~~~~----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 413 (533)
.-|+..|...|++ .+|.+++.++.. ..+ ..+|-.-+..|...|+..++...+.....
T Consensus 101 l~~kL~~l~~~~~~y-~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 101 LEARLIALYFDTALY-TEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhH-HHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3467788888887 888888777643 112 12566777788899999999988887753
No 261
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=67.26 E-value=40 Score=28.85 Aligned_cols=56 Identities=14% Similarity=0.058 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 009506 227 GYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 282 (533)
Q Consensus 227 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 282 (533)
+...++.++|..|...|+..--...|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34556666666666666545556666666666666677777777766666655555
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.66 E-value=39 Score=32.97 Aligned_cols=61 Identities=11% Similarity=0.034 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAI--GVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMT 170 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~ 170 (533)
++..+...|.+.|++++|.+.|.++... +..--...+-.+|..+...+++..+...+++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3445666666666666666666666542 111223344445555555555555555555443
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.48 E-value=59 Score=31.66 Aligned_cols=98 Identities=11% Similarity=0.040 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCCHHH--
Q 009506 179 NTYASLLRAYGRARYGEDTLSVYREMKEK--GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS---ENCQPDSWT-- 251 (533)
Q Consensus 179 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~p~~~~-- 251 (533)
.++..+.+.|.+.|+++.|.++|.++.+. +..--...+-.+|..+...+++..+...+++.... +. .++...
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~-d~~~~~~l 210 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGG-DWERRNRY 210 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC-CTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCC-CHHHHHHH
Confidence 35677888899999999999999988874 22333567777888888888998888888776532 21 222211
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
...-...+...+++..|.+.|-+...
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 11112223456777777777766544
No 264
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=66.17 E-value=95 Score=29.78 Aligned_cols=299 Identities=10% Similarity=0.004 Sum_probs=159.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCC-CCCHH---
Q 009506 109 NAFSTLIKLYGTAGNFDGCLNVYEEMKAI-GVK---PNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGL-SPNWN--- 179 (533)
Q Consensus 109 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~---pd~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~-~p~~~--- 179 (533)
.....|...|.+.|+.++..+++...... +.- ........||+.+.... ..+.-.++..+..+..- .--.+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667899999999999999999886532 001 12344667788776643 33444444444432110 00111
Q ss_pred -HHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCCHHHH
Q 009506 180 -TYASLLRAYGRARYGEDTLSVYREMKEK--GMQ---LSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSEN-CQPDSWTF 252 (533)
Q Consensus 180 -~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~p~~~~~ 252 (533)
+=.-|...|...|++.+|.+++.++.+. ... .-..+|-.-+..|...+++.++...+........ +.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2236788999999999999999888763 111 1244566677889999999999999977654210 11333222
Q ss_pred H----HHHHHHH-hcCChHHHHHHHHHHHH----cCCC--CCHHHHHHHHHHHHhcCChhHHHHHHH-HhhhCCCCCCHH
Q 009506 253 S----SMITICS-CRGKVSEAEAMFNEMLE----AGFE--PNLFVLTSLIQCYGKAQRTDDVVRALN-RLPELGITPDDR 320 (533)
Q Consensus 253 ~----~li~~~~-~~g~~~~A~~~~~~m~~----~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~ 320 (533)
. .-.-.+. ..+++..|...|-+..+ .|.. .+...|..| .+..... ..+...++. +....-..|+..
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~~~-r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIMLGQ-SDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHTTC-GGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHcCC-HHHHHHHhccccccccCCccHH
Confidence 1 1122345 78899999988877542 1110 012233222 2222222 222222221 111111345555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCC
Q 009506 321 FCGCLLNVMTQTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNL 400 (533)
Q Consensus 321 ~~~~ll~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~ 400 (533)
.+..++.++....-.+...+++..... ...+.++..-+..+. .++...++ .++...........|...+.- .
T Consensus 258 ~l~~L~~a~~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~~~L~--~~Ir~~~L---~~i~~pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 258 AMKSVAEASHKRSLADFQAALKEYKKE-LAEDVIVQAHLGTLY--DTMLEQNL---CRIIEPYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSTTT-TTTSHHHHHHHHHHH--HHHHHHHH---HHHHTTCSEEEHHHHHHHHTC--C
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcChHHHHHHHHHH--HHHHHHHH---HHHhHhhceeeHHHHHHHHCc--C
Confidence 667777777665444444444432211 111222211111100 00112222 112223345566677666643 6
Q ss_pred HHHHHHHHHHHHhcccc
Q 009506 401 LENACKLLELGLTLEVY 417 (533)
Q Consensus 401 ~~~A~~l~~~m~~~g~~ 417 (533)
.+++...+-+|...|.-
T Consensus 330 ~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 330 MPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHCCCe
Confidence 78999999999887753
No 265
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=66.16 E-value=33 Score=28.30 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 009506 285 FVLTSLIQCYGKAQRTDDVVRALNRLPE 312 (533)
Q Consensus 285 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 312 (533)
..--.+..+|.+.++.++|+.+++.+..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 3334467788888899998888887643
No 266
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=64.42 E-value=46 Score=26.30 Aligned_cols=73 Identities=4% Similarity=-0.176 Sum_probs=51.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 009506 103 KWRIDPNAFSTLIKLYGTAGNF---DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 177 (533)
Q Consensus 103 g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 177 (533)
+-.|++.+--.+..++++..+. .+++.+++++.+.+..-....+-.|--++.+.|++++|.+..+.+++. .|+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 4566777766667777776544 468888888876542223555666777888999999999999988874 454
No 267
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=62.61 E-value=14 Score=34.27 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCCCHH
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR--TDDVVRALNRLPELGITPDDR 320 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 320 (533)
...++.-|...|+.++|.+.++++..-.+ -...+...+..++-+.++ .+.+..++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f-~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGG-HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcc-hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45778888888888888888888743111 123445555556655432 345666777776666554433
No 268
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=61.66 E-value=38 Score=27.94 Aligned_cols=119 Identities=11% Similarity=0.072 Sum_probs=68.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAI-GVKPNM-------ITYNNLLDTMGRAKRPWQVKTIYKEMTDN--GLSPNWNT 180 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~ 180 (533)
+-.-++.+...|.++.|+-+.+.+... +..||. .++..+.+++...+++.+|...|++.++. .+.-+..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444677788899999999888876532 123442 25566778899999999999999997532 11111111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 009506 181 YASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSS 242 (533)
Q Consensus 181 ~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 242 (533)
+..+- .. ..... ......+...---+-.+|.+.+++++|+.+++.+..+
T Consensus 103 ~~~~~---~~-ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 103 RPSTG---NS-ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccc---cc-CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 11110 00 00000 0111224444445677888888888888888876543
No 269
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=60.69 E-value=74 Score=26.61 Aligned_cols=143 Identities=10% Similarity=-0.007 Sum_probs=71.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
.+|..+-...+..+.+.|..+..-.+. ++.. .+|..+-...+.++++.++.+. ...+..+.. .++..+-...
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~-~~l~---~~~~~vr~~a~~~L~~~~~~~~-~~~L~~~l~---d~~~~vr~~a 96 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLI-KALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSA 96 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHH-HHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHH
Confidence 466666667777777776643333333 3332 2566666666666666665433 333333333 3566666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
+.++.+.+..+....+. .+.. .++..+-...+.++.+.++. ++...+..+.. .++...-...+.++.+.|+
T Consensus 97 ~~aL~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 97 AVALGQIGDERAVEPLI-KALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK----DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT----CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCcHHHHHHHH-HHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc----CCCHHHHHHHHHHHHHhCc
Confidence 66666666543322222 2222 23555555555555555543 23333333322 3444444455555555544
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=59.23 E-value=32 Score=31.03 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=27.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 009506 223 CADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLE 277 (533)
Q Consensus 223 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (533)
..+.|.+++|++....-.+.. +-|...=..++..+|-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344555555555554444433 34555555555555555555555555555444
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=57.05 E-value=92 Score=26.59 Aligned_cols=75 Identities=20% Similarity=0.299 Sum_probs=38.4
Q ss_pred cCCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 009506 102 EKWRIDPNAFSTLIKLYGT--AGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSP 176 (533)
Q Consensus 102 ~g~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 176 (533)
...+-|+.-....|..--. .+...++.++|..|..+|+--. ..-|......+-..|++.+|.++|+.-++.+-+|
T Consensus 71 ~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 71 ETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp GGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3344455544433333222 3335566666666665544322 3344455555555666666666666666555555
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=55.80 E-value=43 Score=27.21 Aligned_cols=51 Identities=16% Similarity=0.171 Sum_probs=24.9
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 009506 232 AFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 282 (533)
Q Consensus 232 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 282 (533)
+.++|..|...|+..--...|......+-..|++.+|.++|+.-.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555555544433344445555555555555555555555544444333
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=55.34 E-value=1.3e+02 Score=27.76 Aligned_cols=115 Identities=14% Similarity=0.077 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHH----HHHHHHHCCCCCCHHHHHH
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKT----IYKEMTDNGLSPNWNTYAS 183 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~~~~~ 183 (533)
...|-++..-|.+.+++++|++++..-.. .+.+.|+...|-+ +.+-..+.++++|......
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~r 97 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVAR 97 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34577788888888888888887654321 1234455544443 3555556778888888888
Q ss_pred HHHHHHhcCChH-HHHHHHHHHHH----cC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 009506 184 LLRAYGRARYGE-DTLSVYREMKE----KG--MQLSVTLYNTLLAMCADVGYTDEAFEIFE 237 (533)
Q Consensus 184 ll~~~~~~g~~~-~a~~~~~~m~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 237 (533)
++..+.....-+ .-.++++++.+ .| ..-|......+...|.+.|++.+|+..|-
T Consensus 98 l~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 98 LVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 887776643222 12333344432 22 12366777777788888888888877663
No 274
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=53.79 E-value=46 Score=27.46 Aligned_cols=53 Identities=11% Similarity=0.093 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 009506 268 AEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320 (533)
Q Consensus 268 A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 320 (533)
+..+|..|...|+--. ..-|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 4455555555554333 3344455555555566666666666655555555443
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=53.55 E-value=9 Score=33.53 Aligned_cols=86 Identities=10% Similarity=0.035 Sum_probs=43.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHH
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT--YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT--YASLLRAYG 189 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~ 189 (533)
.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHH
Confidence 34455677888877777777666554443211 112333444556554 4445555665443211 112333444
Q ss_pred hcCChHHHHHHHHH
Q 009506 190 RARYGEDTLSVYRE 203 (533)
Q Consensus 190 ~~g~~~~a~~~~~~ 203 (533)
..|+.+-+..+++.
T Consensus 88 ~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 88 EHRSPTCLRALLDS 101 (241)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHc
Confidence 55665554444443
No 276
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=53.51 E-value=81 Score=24.90 Aligned_cols=67 Identities=6% Similarity=-0.012 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 175 SPNWNTYASLLRAYGRARYG---EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 175 ~p~~~~~~~ll~~~~~~g~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
.|+..|--.+.-++++.... .+++.+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+.+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444445554433 34555555555544222233344444556666666666666666555
No 277
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=51.82 E-value=1.6e+02 Score=27.82 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHH
Q 009506 110 AFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN----MITYNNLLDTMGRAKR--PWQVKTIYKEMTDNGLSPNWNTYAS 183 (533)
Q Consensus 110 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd----~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~ 183 (533)
....+|.-|...|+.++|.+.++++.. |+ ...+..+..++ ..++ .+.+-.++..+...|+-+.......
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aL-er~~~~re~~~~LL~~L~~~~~ls~~~~~~G 88 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSL-DRSDEDKEKASSLISLLKQEGIATSDNFMQA 88 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 356799999999999999999999853 43 23344433333 3332 2446677777777766444444444
Q ss_pred HHHHH
Q 009506 184 LLRAY 188 (533)
Q Consensus 184 ll~~~ 188 (533)
+...+
T Consensus 89 f~~ll 93 (364)
T 3l6a_A 89 FLNVL 93 (364)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 278
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=51.66 E-value=65 Score=25.24 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCC
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR--TDDVVRALNRLPELGITP 317 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p 317 (533)
...++.-|...|+.++|.+.++++..- ..-...+...+..++-+.+. .+.+..++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p-~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 345666666677777777777665321 11123344445555555432 345555666666555443
No 279
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=51.47 E-value=73 Score=23.75 Aligned_cols=29 Identities=7% Similarity=-0.028 Sum_probs=11.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 009506 246 QPDSWTFSSMITICSCRGKVSEAEAMFNEML 276 (533)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 276 (533)
.||...|-+|... +.|..+++..-+..+.
T Consensus 67 ~pdlepw~ALce~--rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 67 WPALEPWFALCEW--HLGLGAALDRRLAGLG 95 (115)
T ss_dssp CGGGHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence 3444444433322 3444444444443433
No 280
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=50.92 E-value=75 Score=23.73 Aligned_cols=13 Identities=15% Similarity=0.010 Sum_probs=5.4
Q ss_pred HhcCCHHHHHHHH
Q 009506 224 ADVGYTDEAFEIF 236 (533)
Q Consensus 224 ~~~g~~~~A~~~~ 236 (533)
...|++++|..+.
T Consensus 51 mNrG~Yq~Al~l~ 63 (116)
T 2p58_C 51 MNRGDYASALQQG 63 (116)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HcchhHHHHHHhc
Confidence 3344444444443
No 281
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.35 E-value=1.1e+02 Score=25.63 Aligned_cols=172 Identities=10% Similarity=0.012 Sum_probs=110.6
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 009506 105 RIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASL 184 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 184 (533)
.+|...-...+..+.+.|..+ +...+.++.. .+|..+-...+.++++.++.+. ...+..+.. .+|..+-...
T Consensus 30 ~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a 101 (211)
T 3ltm_A 30 DDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSA 101 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHH
Confidence 567888888888888888743 4444444444 3677777788888888887543 444444443 4788888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
+.++.+.+..+.. ..+..+.+ .++..+-...+.++.+.|+.+ +...+..+.. .++...-...+.++.+.+.
T Consensus 102 ~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 102 AVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK----DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCc
Confidence 8888888875543 44444443 357777777788888877643 4455555443 5677777777888888776
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 009506 265 VSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKA 297 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 297 (533)
.++...+..+.+. ++...-...+.++.+.
T Consensus 173 -~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 173 -ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp -HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred -hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 4455555555543 5555555555555443
No 282
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=48.68 E-value=1e+02 Score=24.66 Aligned_cols=71 Identities=4% Similarity=-0.153 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 009506 105 RIDPNAFSTLIKLYGTAGNF---DGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 177 (533)
Q Consensus 105 ~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 177 (533)
.++..+--.+..++++..+. .+++.+++++...+..-.....-.|--++.+.|++++|.+..+.+++. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 57777766677777776644 468888888876542223444445666788888888888888888874 454
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.61 E-value=4.7 Score=35.32 Aligned_cols=10 Identities=20% Similarity=-0.064 Sum_probs=4.4
Q ss_pred HhcCChhHHH
Q 009506 295 GKAQRTDDVV 304 (533)
Q Consensus 295 ~~~g~~~~a~ 304 (533)
+..|+.+-+.
T Consensus 185 ~~~~~~~~v~ 194 (240)
T 3eu9_A 185 VLAGNTTVIS 194 (240)
T ss_dssp HHHTCHHHHH
T ss_pred HHcCCHHHHH
Confidence 3445544333
No 284
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=47.36 E-value=1.1e+02 Score=24.53 Aligned_cols=66 Identities=6% Similarity=-0.020 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 009506 176 PNWNTYASLLRAYGRARYG---EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKS 241 (533)
Q Consensus 176 p~~~~~~~ll~~~~~~g~~---~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 241 (533)
|+..+--.+.-++++.... .+++.+++++.+.+..-.....-.|.-++.+.|++++|.+..+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444443444444444333 23444555444433221222222333445555555555555555554
No 285
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=47.09 E-value=1e+02 Score=26.73 Aligned_cols=107 Identities=13% Similarity=0.139 Sum_probs=62.4
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCC
Q 009506 97 TRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLS 175 (533)
Q Consensus 97 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~ 175 (533)
......|...|...+..+........-...|+.++..- -. +-.-|-.-+.+.| ..+.+..+++.+.+.|+-
T Consensus 37 ~~~L~kg~el~~e~~~~i~~~~~~~~a~~~Al~~Ls~r----~~----S~~EL~~KL~~kg~~~e~i~~vl~~L~~~g~l 108 (221)
T 3d5l_A 37 QFRLMKGTELDEKQIAAIATADQQAKAYSRMLDYLSYQ----MR----TESDIVKKLKEIDTPEEFVEPILKKLRGQQLI 108 (221)
T ss_dssp HTTCCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTS----CC----CHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC
T ss_pred HcCCcCCCCCCHHHHHHHHHhHHHHHHHHHHHHHhccc----cc----cHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCC
Confidence 33456778888888888876654443344444444321 11 2223333344444 345677888888888886
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC
Q 009506 176 PNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLS 212 (533)
Q Consensus 176 p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~ 212 (533)
-|..--...++...+.+.+ ....+-.++..+|+..+
T Consensus 109 dD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~~ 144 (221)
T 3d5l_A 109 DDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGES 144 (221)
T ss_dssp CHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCHH
Confidence 5555555566665542222 35667778888888643
No 286
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=45.04 E-value=1.7e+02 Score=26.24 Aligned_cols=51 Identities=12% Similarity=0.032 Sum_probs=23.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 189 GRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMK 240 (533)
Q Consensus 189 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 240 (533)
.+.|+++++++....-++.... |...-..++..+|-.|+++.|.+=++...
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3444444444444444443322 44444444445555555555544444433
No 287
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=44.60 E-value=1.1e+02 Score=26.81 Aligned_cols=90 Identities=10% Similarity=0.078 Sum_probs=46.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEMKAI--GVKP----NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLR 186 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p----d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 186 (533)
--++.+....++++|.+++++..+. +++. +...-...+..-.....-.-+..+.+++ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3567788889999999998877542 2221 0011122222222222222333344444 22 344555555666
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 009506 187 AYGRARYGEDTLSVYREMK 205 (533)
Q Consensus 187 ~~~~~g~~~~a~~~~~~m~ 205 (533)
.+.+.|+.++|.++|-+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 6667777777766665543
No 288
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=43.62 E-value=64 Score=30.22 Aligned_cols=67 Identities=9% Similarity=0.130 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNW 178 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~ 178 (533)
...++.-|...|+.++|.+.++++...... ...++..+..++-+.. ..+.+..++..+.+.|+-+..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~ 81 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTA 81 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHH
Confidence 467899999999999999999998531110 1122222333322211 234577788888877754433
No 289
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.23 E-value=58 Score=26.40 Aligned_cols=65 Identities=14% Similarity=0.148 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCC
Q 009506 252 FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR--TDDVVRALNRLPELGITP 317 (533)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p 317 (533)
...+|.-|...|+.++|.+.++++..- ..-...+...+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 445666666667777777776665321 11123344444555554322 344555666665555443
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=42.65 E-value=69 Score=27.89 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 009506 231 EAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEP 282 (533)
Q Consensus 231 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 282 (533)
++.++|..|...|+..--...|......+-..|++.+|.+||+.-.+.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444555555554434444455555555555555555555555544444444
No 291
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=42.39 E-value=16 Score=32.43 Aligned_cols=57 Identities=11% Similarity=-0.027 Sum_probs=35.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHH--hcCChhHHHHHHHHHH
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMIT-------YNNLLDTMG--RAKRPWQVKTIYKEMT 170 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~-------~~~li~~~~--~~g~~~~a~~~~~~m~ 170 (533)
.+...++.|+.+....+++.+.+.|..++... ++.|..+.. +.|+.+-+..+++.-.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 34455678888888888887777665555332 344444432 5677777766666543
No 292
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=41.13 E-value=1.4e+02 Score=27.51 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=39.7
Q ss_pred HHHHHhhhhhccHHHHHHHHHhhhccCc--cchhhHHHHHHHHhcCC--HHHHHHHHHHHHhccc
Q 009506 356 KLLLEEQDIEGDFKKEATELFNSISKDV--KKAYCNCLIDLCVNLNL--LENACKLLELGLTLEV 416 (533)
Q Consensus 356 ~~l~~~~~~~g~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~ 416 (533)
..++..|...|+. ++|...++.+..+. ...+..++..++-+.++ .+...+++..+.+.|+
T Consensus 170 ~~lL~EY~~~~D~-~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ 233 (307)
T 2zu6_B 170 DMLLKEYLLSGDI-SEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSST 233 (307)
T ss_dssp HHHHHHHHHHCCH-HHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCH-HHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCC
Confidence 6677888888877 99999999987521 12244555555555443 4556778888776665
No 293
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=40.89 E-value=2.5e+02 Score=26.93 Aligned_cols=155 Identities=11% Similarity=0.075 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCC---HHHHHHHHHHHHhCCC---CCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 009506 215 LYNTLLAMCADVGY---TDEAFEIFEDMKSSEN---CQPDSWT--FSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFV 286 (533)
Q Consensus 215 ~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~---~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 286 (533)
.-..++...|..|+ .++|.+.|+.....+. ++||... |...+ +..++-..+++..... .+..-
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~------~~~~~~~~l~~~y~~s---~~~~e 269 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA------QSTEGWDFLYSKYQFS---LSSTE 269 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHT------TSHHHHHHHHHHHHHC---CCHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeee------CCHHHHHHHHHHHhcC---CCHHH
Confidence 34456666667665 4677777877654321 3555332 22221 1233334455555443 45555
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCCHHHHHHHHHHHhcC--ChHHHHHHHHH----HHh-cCCC---hhHHH
Q 009506 287 LTSLIQCYGKAQRTDDVVRALNRLPELGI-TPDDRFCGCLLNVMTQT--PKEELGKLVEC----VEK-SNSK---LGYVV 355 (533)
Q Consensus 287 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~--~~~~a~~~~~~----~~~-~~~~---~~~~~ 355 (533)
-..++.+++...+.+...++++......+ ++... .. ++.+.+.. |.+.+..++.. +.+ .+.. ...++
T Consensus 270 k~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~-~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~~i 347 (419)
T 3rjo_A 270 KSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEF-PQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMV 347 (419)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGH-HH-HHHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHH-HH-HHHHHhcCcchHHHHHHHHHHHHHHHHHHhCcCchhHHHHH
Confidence 66788888888888888888877766553 43332 22 33344433 33666665532 322 2222 22222
Q ss_pred HHHHHhhhhhccHHHHHHHHHhhhcc
Q 009506 356 KLLLEEQDIEGDFKKEATELFNSISK 381 (533)
Q Consensus 356 ~~l~~~~~~~g~~~~~a~~~~~~~~~ 381 (533)
..+...+....+. ++..++|+....
T Consensus 348 ~~~~~~~~t~~~l-~e~~~Ff~~~~~ 372 (419)
T 3rjo_A 348 MGTTNQFSTRTRL-EEVKGFFSSLKE 372 (419)
T ss_dssp HHTTTTCCSHHHH-HHHHHHHHTTTT
T ss_pred HHHhhcCCCHHHH-HHHHHHHHhCcc
Confidence 3333334444433 777888876543
No 294
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=39.08 E-value=3.3e+02 Score=27.82 Aligned_cols=111 Identities=9% Similarity=0.063 Sum_probs=60.3
Q ss_pred ChhHHHHHHHHhhhCCCCCCHH----HHHHHHHHHhcCC-hHHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHH
Q 009506 299 RTDDVVRALNRLPELGITPDDR----FCGCLLNVMTQTP-KEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEAT 373 (533)
Q Consensus 299 ~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~ 373 (533)
+.+.|...|....+.. ..+.. ....+...+...+ ..++...+........+... ..-.+..-.+.|++ +.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~~d~-~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGTGDR-RGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHHTCH-HHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHCCCH-HHHH
Confidence 6677888887775432 12322 2233333344445 45566665554443333222 22222222345777 7888
Q ss_pred HHHhhhccCc-cch-hhHHHHHHHHhcCCHHHHHHHHHHHH
Q 009506 374 ELFNSISKDV-KKA-YCNCLIDLCVNLNLLENACKLLELGL 412 (533)
Q Consensus 374 ~~~~~~~~~~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~ 412 (533)
..|+.+.... +.. ..--+..++...|+.++|..+|+.+.
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888887532 212 11234456677888888888887764
No 295
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.63 E-value=77 Score=31.63 Aligned_cols=65 Identities=6% Similarity=-0.011 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH--HHHH-HHHHHHHhcCChhHHHHHHHHHHHC
Q 009506 108 PNAFSTLIKLYGTAGNFDGCLNVYEEMKAIG-VKPNM--ITYN-NLLDTMGRAKRPWQVKTIYKEMTDN 172 (533)
Q Consensus 108 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~--~~~~-~li~~~~~~g~~~~a~~~~~~m~~~ 172 (533)
..++|.+++.|...+.++.|..+..+..--- ..+|. ..|. .+...+.-.+++.+|.+.|......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4567788888888888888888887764100 00111 1222 2334455677777787777766543
No 296
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=38.33 E-value=1.2e+02 Score=22.57 Aligned_cols=80 Identities=15% Similarity=-0.051 Sum_probs=56.0
Q ss_pred cCChHHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009506 331 QTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 410 (533)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 410 (533)
.+..++|.-+.+++...+. ...+.-+-+..+..+|++ ++|..+.+... -||...|-+|. -++.|..+++..-+..
T Consensus 19 ~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Y-q~Al~l~~~~c-~pdlepw~ALc--e~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRY-QEALAFAHGNP-WPALEPWFALC--EWHLGLGAALDRRLAG 93 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCH-HHHHGGGTTCC-CGGGHHHHHHH--HHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhH-HHHHHhcCCCC-CchHHHHHHHH--HHhcccHHHHHHHHHH
Confidence 3444888888888877665 333322334455667887 99999988887 57888876654 4789999998888866
Q ss_pred HHhcc
Q 009506 411 GLTLE 415 (533)
Q Consensus 411 m~~~g 415 (533)
+...|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 65554
No 297
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=38.01 E-value=50 Score=26.29 Aligned_cols=67 Identities=21% Similarity=0.256 Sum_probs=45.9
Q ss_pred eeecccccChhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeeccccccch-hHHHHHHHHhhhcC--CCCCCCC
Q 009506 428 WSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDK-GLASVFESHLKELN--APFHDSP 500 (533)
Q Consensus 428 ~~~~l~~~~~g~~~~a~~~~~~~l~~~~~~g~~~p~~~~i~~~~~~~~~~~~-~l~~~~~~~L~~~~--~~f~~~~ 500 (533)
-.++++++....|..++..++ .++...| +. .+.|++|.|.++.... -|++.+...|.+.. .-|..++
T Consensus 48 ~~LDLHG~~~~EA~~~L~~fL---~~a~~~g--~r-~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~~V~~f~~a~ 117 (137)
T 3qd7_X 48 ASLNLLRQPVEECRKMVFSFI---QQALADG--LR-NVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTAL 117 (137)
T ss_dssp GEEECTTCCHHHHHHHHHHHH---HHHHHTT--CS-EEEEECCCCSSTTSHHHHHHHHHHHHHHTSTTEEEEEECC
T ss_pred eEEECCCCCHHHHHHHHHHHH---HHHHHCC--CC-EEEEEECCCCCCCCchHHHHHHHHHHHhcCCceeEEeecC
Confidence 367999999988888877664 4555555 33 4789999988754322 47888889988854 3344443
No 298
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.01 E-value=1.2e+02 Score=24.47 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHH
Q 009506 111 FSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR--PWQVKTIYKEMTDNGLSPNWN 179 (533)
Q Consensus 111 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 179 (533)
.+.+|.-|...|+.++|.+.++++..-.. -...++..+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 46789999999999999999999853111 123344444455554332 445778888888777644433
No 299
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=37.71 E-value=1.3e+02 Score=22.54 Aligned_cols=80 Identities=16% Similarity=0.003 Sum_probs=55.5
Q ss_pred cCChHHHHHHHHHHHhcCCChhHHHHHHHHhhhhhccHHHHHHHHHhhhccCccchhhHHHHHHHHhcCCHHHHHHHHHH
Q 009506 331 QTPKEELGKLVECVEKSNSKLGYVVKLLLEEQDIEGDFKKEATELFNSISKDVKKAYCNCLIDLCVNLNLLENACKLLEL 410 (533)
Q Consensus 331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 410 (533)
.+..++|.-+.+++...+. ...+.-+-+..+..+|++ ++|..+.+... -||...|-+|. -++.|..+++..-+..
T Consensus 20 ~H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Y-q~Al~l~~~~c-~pdlepw~ALc--e~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDY-ASALQQGNKLA-YPDLEPWLALC--EYRLGLGSALESRLNR 94 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCH-HHHHHHHTTSC-CGGGHHHHHHH--HHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhH-HHHHHhcCCCC-CchHHHHHHHH--HHhcccHHHHHHHHHH
Confidence 4444888888888877665 333322334455667887 99999998888 57888886654 4788888888887766
Q ss_pred HHhcc
Q 009506 411 GLTLE 415 (533)
Q Consensus 411 m~~~g 415 (533)
+...|
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 65444
No 300
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=36.98 E-value=1.8e+02 Score=24.07 Aligned_cols=142 Identities=10% Similarity=0.008 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 009506 141 PNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLL 220 (533)
Q Consensus 141 pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li 220 (533)
+|...-...+.++++.+...... .+-++.. .+|..+-...+.++.+.+..+....+. .+.. .++..+-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~-~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVE-PLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHH-HHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHH-HHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---CCCHHHHHHHH
Confidence 34444444444455444432222 2222222 245555555555555555443222222 2222 23555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009506 221 AMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 299 (533)
Q Consensus 221 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 299 (533)
.++.+.|+.+ +...+..+.. .+|...-...+.++.+.++.+ +...+..+.. .++...-...+.++.+.|.
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 5555555432 2222222221 344444444455555554432 2222222222 1444444444555544443
No 301
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=36.79 E-value=19 Score=32.21 Aligned_cols=58 Identities=16% Similarity=0.060 Sum_probs=27.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 009506 112 STLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMI---TYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPN 177 (533)
Q Consensus 112 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 177 (533)
++.+...++.|+.+....++ +.|..++.. .-.+.+...+..|+.+ +++.+.+.|..++
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPV 66 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred chHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCc
Confidence 34555566777765554444 444333211 1123344445566654 4444555565443
No 302
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.65 E-value=42 Score=29.00 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=16.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 009506 150 LDTMGRAKRPWQVKTIYKEMTDNGLSPN 177 (533)
Q Consensus 150 i~~~~~~g~~~~a~~~~~~m~~~g~~p~ 177 (533)
+...+..|+.+.+..+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3344556777766666666665554443
No 303
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=36.19 E-value=1.1e+02 Score=21.31 Aligned_cols=30 Identities=13% Similarity=0.329 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 009506 196 DTLSVYREMKEKGMQLSVTLYNTLLAMCAD 225 (533)
Q Consensus 196 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 225 (533)
.+.++++.+.+.+...+..|..-.+..+.+
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 344455555444433344444433443333
No 304
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=35.52 E-value=20 Score=30.20 Aligned_cols=16 Identities=0% Similarity=-0.043 Sum_probs=9.4
Q ss_pred HHHHcCChHHHHHHHH
Q 009506 117 LYGTAGNFDGCLNVYE 132 (533)
Q Consensus 117 ~~~~~g~~~~A~~~~~ 132 (533)
..+..|+.+....++.
T Consensus 11 ~A~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 11 EAANQRDTKKVKEILQ 26 (201)
T ss_dssp HHHHTTCHHHHHHHHT
T ss_pred HHHHhccHHHHHHHHH
Confidence 3355677666666554
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.23 E-value=1.7e+02 Score=25.59 Aligned_cols=89 Identities=10% Similarity=0.034 Sum_probs=46.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH--CCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 009506 148 NLLDTMGRAKRPWQVKTIYKEMTD--NGLSP----NWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLA 221 (533)
Q Consensus 148 ~li~~~~~~g~~~~a~~~~~~m~~--~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 221 (533)
--|+.+....++++|.+++++..+ .+++. +.......++.-.....-.-+..+.+++ .. ..+...-...+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 346677888999999999887763 12221 1111122233222222233334444444 22 334455555566
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 009506 222 MCADVGYTDEAFEIFEDM 239 (533)
Q Consensus 222 ~~~~~g~~~~A~~~~~~m 239 (533)
.+.+.|+.++|.++|=+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 667777777777776443
No 306
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.46 E-value=1.1e+02 Score=21.34 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 160 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 192 (533)
-.+.++++.+.+.+...+..|..-.++.+.+.|
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 334444444444433334444444444444433
No 307
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=33.88 E-value=4.8e+02 Score=28.13 Aligned_cols=165 Identities=8% Similarity=-0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCh---HHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 009506 182 ASLLRAYGRARYG---EDTLSVYREMKEK--GMQLSVTLYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMI 256 (533)
Q Consensus 182 ~~ll~~~~~~g~~---~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li 256 (533)
..++...|+.|.. +.|.+.|+..... +.......-..+...-.+.|..++-..+++.... ..+..--..++
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~----~~~~~ek~~ll 765 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQ----AQLVNEADKLR 765 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHH----CCSHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHc----cCCHHHHHHHH
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH---hhhCCCCCCHHHHHHHHHHHhcCC
Q 009506 257 TICSCRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNR---LPELGITPDDRFCGCLLNVMTQTP 333 (533)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~---m~~~g~~p~~~~~~~ll~~~~~~~ 333 (533)
.+++...+.+...++++................+........-.+.|++.+.+ ............+..++...+..-
T Consensus 766 ~aL~~~~d~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~~ 845 (909)
T 4fke_A 766 SALACSNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRRF 845 (909)
T ss_dssp HHHTTCCCHHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTTC
T ss_pred HHhCCCCCHHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Q ss_pred h-HHHHHHHHHHHhcCCC
Q 009506 334 K-EELGKLVECVEKSNSK 350 (533)
Q Consensus 334 ~-~~a~~~~~~~~~~~~~ 350 (533)
. ++..+-++...+..++
T Consensus 846 ~t~~~~~~~~~f~~~~~~ 863 (909)
T 4fke_A 846 SSEFELQQLEQFKKNNMD 863 (909)
T ss_dssp CSHHHHHHHHHHHTTCSS
T ss_pred CCHHHHHHHHHHHhhCCc
No 308
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.62 E-value=1.8e+02 Score=23.06 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=28.1
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009506 168 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227 (533)
Q Consensus 168 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 227 (533)
.|.+.|++.+..=. .++..+...+..-.|.++++.+.+.+...+..|..--|+.+...|
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 34455555554322 223333334444456666666655555445554444444444444
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=33.42 E-value=1.2e+02 Score=24.13 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=35.1
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009506 96 DTRARNEKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKR 158 (533)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~ 158 (533)
...+++.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|..-.|+.+...|-
T Consensus 7 ~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 345666677766553 23344444445 55677777777766555566665555555555554
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.17 E-value=1.9e+02 Score=23.32 Aligned_cols=50 Identities=6% Similarity=0.054 Sum_probs=21.9
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 009506 162 VKTIYKEMTDNGLSPN-WNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 211 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 211 (533)
..++|..|...|+--. ..-|..-...+-..|++.+|.+||+.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444444444443322 2333444444444445555555544444444333
No 311
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=32.22 E-value=1.2e+02 Score=25.18 Aligned_cols=91 Identities=14% Similarity=0.192 Sum_probs=43.8
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHh-cC
Q 009506 118 YGTAGNFDGCLNVYEEMKAIGVKP-NMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWN---TYASLLRAYGR-AR 192 (533)
Q Consensus 118 ~~~~g~~~~A~~~~~~m~~~g~~p-d~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~ll~~~~~-~g 192 (533)
.++.|+++....++.. ++.. +...-.+.+...+..|+.+.-.++.+.+++.|..+|.. -.+.|..++.. ..
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~ 88 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGN 88 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTT
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCc
Confidence 3566777765555543 2111 10111234444455666655566777777777655532 12223222222 12
Q ss_pred ChHHHHHHHHHHHHcCCCcC
Q 009506 193 YGEDTLSVYREMKEKGMQLS 212 (533)
Q Consensus 193 ~~~~a~~~~~~m~~~g~~~~ 212 (533)
+.....++.+.+.+.|..++
T Consensus 89 ~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 89 DITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp CHHHHHHHHHHHHHTTCCSS
T ss_pred chhhHHHHHHHHHHCCCCCC
Confidence 23334556666666665544
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=30.77 E-value=1.8e+02 Score=23.01 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=28.6
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 134 MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 134 m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 192 (533)
|.+.|++.+..= ..++..+...+..-.|.++++.+.+.+...+..|.---|+.+...|
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 445555544422 2344444444455556666666655544444444444444444444
No 313
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=30.38 E-value=2.6e+02 Score=24.24 Aligned_cols=55 Identities=7% Similarity=0.060 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 009506 266 SEAEAMFNEMLEAGFEPN-LFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320 (533)
Q Consensus 266 ~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 320 (533)
+.+..+|..|...|+--. ..-|......+...|++.+|.++|+.-++.+-.|-..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 186 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLR 186 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 577889999998877555 5567788888889999999999999988888787443
No 314
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.95 E-value=2e+02 Score=22.39 Aligned_cols=61 Identities=11% Similarity=0.206 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCC
Q 009506 182 ASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY--TDEAFEIFEDMKSSE 243 (533)
Q Consensus 182 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~ 243 (533)
+.++.-|...|+.++|.+.++++..-.+. ...++..+..++-+.++ .+.+.+++..+...|
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 34455555555555555555554321111 22333333334433321 234455555554444
No 315
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=29.43 E-value=1.9e+02 Score=22.50 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009506 196 DTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227 (533)
Q Consensus 196 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 227 (533)
.|.++++.+.+.+...+..|..--|+.+...|
T Consensus 36 sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 36 SAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444444433333333333333333333
No 316
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=28.98 E-value=42 Score=28.78 Aligned_cols=113 Identities=16% Similarity=0.117 Sum_probs=51.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHh
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW---NTYASLLRAYGR 190 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~ll~~~~~ 190 (533)
.+...++.|+++....+++.-...--..|..-++.| ...+..|+.+ +++.+.+.|..++. .-++. +...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTAL-HWACSAGHTE----IVEFLLQLGVPVNDKDDAGWSP-LHIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHH-HHHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCH-HHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHH-HHHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCH-HHHHHH
Confidence 355567788888887777653221111232223333 3344556544 44445555654432 12222 333344
Q ss_pred cCChHHHHHHHHHHHHcCCCcCHHH--HHHHHHHHHhcCCHHHHHHHH
Q 009506 191 ARYGEDTLSVYREMKEKGMQLSVTL--YNTLLAMCADVGYTDEAFEIF 236 (533)
Q Consensus 191 ~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~ 236 (533)
.|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 83 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 126 (231)
T 3aji_A 83 AGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126 (231)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 45554 3444445554433211 112333344556665444444
No 317
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=28.74 E-value=1.2e+02 Score=21.48 Aligned_cols=68 Identities=24% Similarity=0.366 Sum_probs=44.6
Q ss_pred eecccccChhhHHHHHHHHHHHHHHHHHcCCCCCCceEEEeeeccccccchhHHHHHHHHhhhcC--CCCCCCCCC---c
Q 009506 429 SLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELN--APFHDSPDK---V 503 (533)
Q Consensus 429 ~~~l~~~~~g~~~~a~~~~~~~l~~~~~~g~~~p~~~~i~~~~~~~~~~~~~l~~~~~~~L~~~~--~~f~~~~~~---~ 503 (533)
+++++++....+..++..+ |+++...| ++ .+.|+.|.|. --|++.+...|.+-. ..|..++.+ .
T Consensus 6 ~lDLhG~~~~eA~~~l~~f---l~~a~~~g--~~-~v~IIHGkG~-----GvLr~~V~~~L~~~~~V~~f~~a~~~~GG~ 74 (83)
T 2zqe_A 6 EVDLRGLTVAEALLEVDQA---LEEARALG--LS-TLRLLHGKGT-----GALRQAIREALRRDKRVESFADAPPGEGGH 74 (83)
T ss_dssp EEECTTCCHHHHHHHHHHH---HHHHHHTT--CS-EEEEECCSTT-----SHHHHHHHHHHHHCTTEEEEEECCTTTTGG
T ss_pred EEECCCCCHHHHHHHHHHH---HHHHHHCC--CC-EEEEEECCCc-----hHHHHHHHHHHhcCCceeEEEEcCcccCCC
Confidence 5789999877777777665 45555555 33 4778877665 257888888888754 235555544 4
Q ss_pred ceEE
Q 009506 504 GWFL 507 (533)
Q Consensus 504 g~~~ 507 (533)
|..+
T Consensus 75 Gat~ 78 (83)
T 2zqe_A 75 GVTV 78 (83)
T ss_dssp GEEE
T ss_pred EEEE
Confidence 5544
No 318
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=28.74 E-value=2.5e+02 Score=23.22 Aligned_cols=51 Identities=16% Similarity=0.112 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 009506 160 WQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQL 211 (533)
Q Consensus 160 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 211 (533)
+.+..+++.+.+.|+--|..--...++...+.|.+. ...+-.++..+|+..
T Consensus 50 ~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~G-~~~I~~eL~~KGI~~ 100 (177)
T 3e3v_A 50 DYISEIINKLIDLDLINDKNYAESYVRTMMNTSDKG-PKVIKLNLSKKGIDD 100 (177)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCCC-HHHHHHHHHTTTCCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHccccc-HHHHHHHHHHcCCCH
Confidence 345667777777776555544455555555444332 355666777777753
No 319
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=28.10 E-value=95 Score=29.05 Aligned_cols=63 Identities=8% Similarity=0.006 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCC
Q 009506 146 YNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR-YGEDTLSVYREMKEKGM 209 (533)
Q Consensus 146 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~g~ 209 (533)
...++.-|...|+.++|.+.++++..... ....+...+..++-+.. .-+.+..++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 45788888889999999888887752211 11233333333333321 22345666666666544
No 320
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=27.71 E-value=2.8e+02 Score=23.54 Aligned_cols=38 Identities=16% Similarity=0.173 Sum_probs=21.9
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 009506 261 CRGKVSEAEAMFNEMLEAGFEPNLFVLTSLIQCYGKAQR 299 (533)
Q Consensus 261 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 299 (533)
+..+.+.|+-.+-+|.+.| .|....-..++.+.-..|.
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 3456666666666666666 5555555555555544443
No 321
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=27.43 E-value=13 Score=32.08 Aligned_cols=16 Identities=19% Similarity=-0.049 Sum_probs=0.0
Q ss_pred CCCC----cCCCCCcCcCCC
Q 009506 1 MASN----LCYSTCSLFSTP 16 (533)
Q Consensus 1 ~~~~----~~~s~s~~~~~p 16 (533)
||++ +||++|++++|-
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (224)
T 3bbo_K 1 MAQPLVAAPSSSSITSPIPR 20 (224)
T ss_dssp --------------------
T ss_pred CCccccchhhcccccccCCC
Confidence 7766 899999999876
No 322
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=26.87 E-value=2.6e+02 Score=22.86 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=38.4
Q ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 009506 102 EKWRIDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPN-MITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNW 178 (533)
Q Consensus 102 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 178 (533)
...+-|+.-....|..--.+ +++.++|..|..+||--. ..-|......+-..|++.+|.++|+.-++.+..|-.
T Consensus 57 ~~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 57 KRYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp GGGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred hhhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 34455555544444332222 235556666666555432 333444455555566666666666666666555543
No 323
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=26.25 E-value=3.9e+02 Score=24.65 Aligned_cols=50 Identities=8% Similarity=-0.018 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhhCCCCCCHH--HHHHHHHHHhcCCh-HHHHHHHHHHHhcCCC
Q 009506 301 DDVVRALNRLPELGITPDDR--FCGCLLNVMTQTPK-EELGKLVECVEKSNSK 350 (533)
Q Consensus 301 ~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~-~~a~~~~~~~~~~~~~ 350 (533)
.+..++-.-+..-++.|... +...-+....+.++ ..|..+.+.+.+.++.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 33444444444445555443 44445555556666 7777777777776664
No 324
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.89 E-value=2.4e+02 Score=26.05 Aligned_cols=64 Identities=11% Similarity=0.067 Sum_probs=31.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc----cc--cCCccccCccceeecccccChhhHHHHHHHHHHHHHHHH
Q 009506 392 IDLCVNLNLLENACKLLELGLTL----EV--YTDIQSRSPTQWSLHLKSLSLGAALTALHIWINDLSKAL 455 (533)
Q Consensus 392 i~~~~~~g~~~~A~~l~~~m~~~----g~--~~~~~~~~~~~~~~~l~~~~~g~~~~a~~~~~~~l~~~~ 455 (533)
+...++.|+.+-+..+++..... .. .......+...|..++.....|...+......+.+....
T Consensus 248 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~~~ 317 (364)
T 3ljn_A 248 LYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVV 317 (364)
T ss_dssp HHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHHHHHh
Confidence 34445668877776666652110 00 011111233445555545555666666666555555433
No 325
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.81 E-value=3.2e+02 Score=23.54 Aligned_cols=95 Identities=8% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH-------------------HHHHHH
Q 009506 109 NAFSTLIKLYG--TAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQ-------------------VKTIYK 167 (533)
Q Consensus 109 ~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~-------------------a~~~~~ 167 (533)
+.+.++..+|. +.+++.+-+.+++.+...++.-+... -..+..|.-.-++.+ |+.+|+
T Consensus 18 fyf~~~c~aFR~~r~~dFrq~rdi~eall~~~l~~~~~~-~k~iri~QfLsRI~eG~~LD~~Fd~~~~lTPLESAl~v~~ 96 (235)
T 3bu8_A 18 FYFHEALRAFRGSRYGDFRQIRDIMQALLVRPLGKEHTV-SRLLRVMQCLSRIEEGENLDCSFDMEAELTPLESAINVLE 96 (235)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCCCCCHHH-HHHHHHHHHHHHHHTTTCTTEECSSSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHhCcccccccc-hhHHHHHHHHHHHHcCCCCCcccCCCCCCChHHHHHHHHH
Q ss_pred HHHHCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHHHH
Q 009506 168 EMTDNGLSPNWN-------TYASLLRAYGRARYGEDTLSVYREM 204 (533)
Q Consensus 168 ~m~~~g~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~m 204 (533)
.+.+.--.++.. .--..+-.|.+.|.+++|.++|++.
T Consensus 97 ~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~ 140 (235)
T 3bu8_A 97 MIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKH 140 (235)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
No 326
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=25.78 E-value=7e+02 Score=27.43 Aligned_cols=27 Identities=11% Similarity=0.294 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 009506 283 NLFVLTSLIQCYGKAQRTDDVVRALNRL 310 (533)
Q Consensus 283 ~~~~~~~li~~~~~~g~~~~a~~~~~~m 310 (533)
+..--...|.+++..|... ++..+...
T Consensus 453 ~~~~~~~~LkaLGN~g~p~-~l~~l~~~ 479 (1056)
T 1lsh_A 453 KEEEIVLALKALGNAGQPN-SIKKIQRF 479 (1056)
T ss_dssp CHHHHHHHHHHHHHHTCGG-GHHHHHTT
T ss_pred ChHHHHHHHHHhhccCChh-HHHHHHHh
Confidence 4555556677777777754 34444444
No 327
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=25.27 E-value=2.2e+02 Score=22.69 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009506 195 EDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227 (533)
Q Consensus 195 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 227 (533)
-.|.++++.+.+.+...+..|..--|+.+...|
T Consensus 34 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 34 ISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 334444444444444444444444444444444
No 328
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=25.03 E-value=4.8e+02 Score=25.27 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=21.6
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHhcCCh
Q 009506 297 AQRTDDVVRALNRLPELGITPDDRFCGCLLNVMTQTPK 334 (533)
Q Consensus 297 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 334 (533)
.++.+.|+.++.+|.+.|..|....-..+..+.-.-|.
T Consensus 268 gsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 268 GSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 45666666666666666655555555555555544444
No 329
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=25.00 E-value=1.9e+02 Score=22.92 Aligned_cols=35 Identities=9% Similarity=0.230 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVGY 228 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 228 (533)
.-.|.++++.+.+.+...+..|..--|+.+...|-
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34455555555555555555554445555555443
No 330
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=24.13 E-value=45 Score=22.04 Aligned_cols=24 Identities=8% Similarity=0.005 Sum_probs=17.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCH
Q 009506 226 VGYTDEAFEIFEDMKSSENCQPDS 249 (533)
Q Consensus 226 ~g~~~~A~~~~~~m~~~~~~~p~~ 249 (533)
.-+++.|...|.++...|.++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 458888888888888777656553
No 331
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.13 E-value=2.2e+02 Score=22.14 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=26.3
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 134 MKAIGVKPNMITYNNLLDTMGRAK-RPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 134 m~~~g~~pd~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 192 (533)
|.+.|++.+..= ..++..+...+ ..-.|.++++.+.+.+...+..|.---|+.+...|
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 444555544422 23444444444 44555566666555544444444443444444333
No 332
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.67 E-value=2.4e+02 Score=22.92 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=29.5
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCcCHHHHHHHHHHHHhcC
Q 009506 170 TDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEK--GMQLSVTLYNTLLAMCADVG 227 (533)
Q Consensus 170 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g 227 (533)
.+.|++.+.. -..++..+...+..-.|.++++.+.+. +...+..|..--|+.+...|
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~G 83 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAE 83 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCC
Confidence 3455555443 233444444555555666666666655 54455555444445555544
No 333
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.23 E-value=67 Score=28.10 Aligned_cols=57 Identities=7% Similarity=-0.099 Sum_probs=32.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhc---CChhHHHHHHHHHHH
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNM-------ITYNNLLDTMGRA---KRPWQVKTIYKEMTD 171 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-------~~~~~li~~~~~~---g~~~~a~~~~~~m~~ 171 (533)
.+...++.|+.+....+++.+.+.|..++. .-++.|..++ .. |+.+-+..+++.-..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~-~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAV-LNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHH-HTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHH-HccccchHHHHHHHHhcCCc
Confidence 345556778888777777777666654432 2333444433 34 666666666655443
No 334
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.15 E-value=1.5e+02 Score=24.10 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=36.0
Q ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCh
Q 009506 125 DGCLNVYEE-MKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDN--GLSPNWNTYASLLRAYGRARYG 194 (533)
Q Consensus 125 ~~A~~~~~~-m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~ 194 (533)
+.+++-+.+ +.+.|++.+. .-..++..+...+..-.|.++++.+.+. +...+..|.---|+.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 333433333 3345555544 2344555555555566666666666655 4445555555555556555544
No 335
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.19 E-value=2.3e+02 Score=22.54 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCC
Q 009506 229 TDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGK 264 (533)
Q Consensus 229 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (533)
.-.|.++++.+.+.+. ..+..|..--|+.+...|-
T Consensus 33 h~sa~ei~~~l~~~~~-~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 33 HISAEELYKKLIDLGE-EIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SEEHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHCCc
Confidence 3344444444444432 3344444444444444443
No 336
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=21.92 E-value=1.7e+02 Score=24.16 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=10.1
Q ss_pred hHHHHHHHHHHHHcCCCCC
Q 009506 265 VSEAEAMFNEMLEAGFEPN 283 (533)
Q Consensus 265 ~~~A~~~~~~m~~~g~~p~ 283 (533)
.....++.+.+.+.|..++
T Consensus 90 ~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 90 ITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp HHHHHHHHHHHHHTTCCSS
T ss_pred hhhHHHHHHHHHHCCCCCC
Confidence 3334455555666665554
No 337
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=21.88 E-value=39 Score=30.53 Aligned_cols=186 Identities=13% Similarity=-0.010 Sum_probs=84.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhc
Q 009506 114 LIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNT--YASLLRAYGRA 191 (533)
Q Consensus 114 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~ 191 (533)
.+...++.|+.+-+..+++ .|..++...-.+.+...+..|+.+-+ +.+.+.|..++... -.+.+...+..
T Consensus 34 ~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~~A~~~ 105 (285)
T 3kea_A 34 ASYYAIADNNVRLVCTLLN----AGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALYYAVDS 105 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH----TTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHh----CCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHHHHHHc
Confidence 3445566777765555444 34333222122344445566765544 44445565544211 11233444556
Q ss_pred CChHHHHHHHHHHHHcCCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 009506 192 RYGEDTLSVYREMKEKGMQLSVT---LYNTLLAMCADVGYTDEAFEIFEDMKSSENCQPDSWTFSSMITICSCRGKVSEA 268 (533)
Q Consensus 192 g~~~~a~~~~~~m~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (533)
|+.+-+..++ +.|..++.. -+.+.+...+..|+.+-+..+++ .|....+...-.+.+...+..|+.+-+
T Consensus 106 g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 106 GNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS----EIPSTFDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp TCHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHT----TSCTTCCCSTHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHh----CCCccccccCCccHHHHHHHcChHHHH
Confidence 6665444443 345443322 12344555566677655444443 332112221333445555677777766
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH
Q 009506 269 EAMFNEMLEAGFEPNLFVLTSLIQCYGKAQRTDDVVRALNRLPELGITPDDR 320 (533)
Q Consensus 269 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 320 (533)
..+++.-..-.. .|...++..+...+..|+. ++.+.+.+.|..++..
T Consensus 178 ~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 178 ILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTT
T ss_pred HHHHHcCCCCCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCC
Confidence 666655333111 1111112222223344553 3444455566665544
No 338
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.82 E-value=50 Score=27.48 Aligned_cols=81 Identities=11% Similarity=0.084 Sum_probs=34.7
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHH--HHHHHHHHHhcCCHH
Q 009506 153 MGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTL--YNTLLAMCADVGYTD 230 (533)
Q Consensus 153 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~ 230 (533)
.+..|+.+.+..++..-...--..|..-++ .+...++.|+.+ +++.+.+.|..++... -.+.+...+..|+.+
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~ 86 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRTE 86 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence 345677666655554221000011222222 333344556644 4444445555443211 112233445567766
Q ss_pred HHHHHHHH
Q 009506 231 EAFEIFED 238 (533)
Q Consensus 231 ~A~~~~~~ 238 (533)
-+..+++.
T Consensus 87 ~~~~Ll~~ 94 (201)
T 3hra_A 87 ILAYMLKH 94 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 66555543
No 339
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=21.59 E-value=2.5e+02 Score=20.72 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=15.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 162 VKTIYKEMTDNGLSPNWNTYASLLRAYGRAR 192 (533)
Q Consensus 162 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 192 (533)
+.++.+++..-|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444444444455555555555555544443
No 340
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.54 E-value=3.1e+02 Score=21.80 Aligned_cols=59 Identities=12% Similarity=0.166 Sum_probs=28.5
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009506 168 EMTDNGLSPNWNTYASLLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227 (533)
Q Consensus 168 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 227 (533)
.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|..--|+.+...|
T Consensus 17 ~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 17 SIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3445555444322 2334444444445556666666666555555555444444444444
No 341
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.15 E-value=1.4e+02 Score=23.10 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=21.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009506 185 LRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227 (533)
Q Consensus 185 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 227 (533)
+..+...+..-.|.++++.+.+.+...+..|..-.|+.+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3334344444555666666655554445555444444444444
No 342
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=20.85 E-value=3.3e+02 Score=21.90 Aligned_cols=115 Identities=9% Similarity=0.096 Sum_probs=0.0
Q ss_pred HcC------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 009506 120 TAG------NFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAKRPWQVKTIYKEMTDNGLSPNWNTYASLLRAYGRARY 193 (533)
Q Consensus 120 ~~g------~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 193 (533)
+.| ..+....+++.+.+.|.--|..--...+....+.| .....+-.++.+.|+ +..+....+..+-. ..
T Consensus 36 ~~g~e~~~~~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI--~~~~i~~al~~~~~-d~ 110 (159)
T 3c1d_A 36 KNGPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGI--SREATEKAMREADI-DW 110 (159)
T ss_dssp --------CCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTC--CHHHHHHHHHHHCC-CH
T ss_pred ccCccccCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCC--CHHHHHHHHHHcCH-hH
Q ss_pred hHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 009506 194 GEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG-YTDEAFEIFEDM 239 (533)
Q Consensus 194 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m 239 (533)
.+.|..+.+.-.......+.....-++..+.+.| .++.+..+++.+
T Consensus 111 ~~~a~~l~~kk~~~~~~~~~~~~~K~~~~L~rrGF~~~~i~~~l~~~ 157 (159)
T 3c1d_A 111 AALARDQATRKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQDIWRNF 157 (159)
T ss_dssp HHHHHHHHHHHHCSSCCCSHHHHHHHHHHHHHTTCCHHHHTTCC---
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHhc
No 343
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.78 E-value=30 Score=30.91 Aligned_cols=57 Identities=9% Similarity=-0.091 Sum_probs=35.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC-------CHHHHHHHHHHHH--hcCChhHHHHHHHHH
Q 009506 113 TLIKLYGTAGNFDGCLNVYEEMKAIGVKP-------NMITYNNLLDTMG--RAKRPWQVKTIYKEM 169 (533)
Q Consensus 113 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------d~~~~~~li~~~~--~~g~~~~a~~~~~~m 169 (533)
+.+...++.|+.+.+..+++...+.+... |..-++.|..++. +.|+.+-+..+++.-
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 34455567888888888888776655332 3334455555554 247776666666654
No 344
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.41 E-value=1.3e+02 Score=23.71 Aligned_cols=44 Identities=20% Similarity=0.152 Sum_probs=22.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 009506 184 LLRAYGRARYGEDTLSVYREMKEKGMQLSVTLYNTLLAMCADVG 227 (533)
Q Consensus 184 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 227 (533)
+++.+...+..-.|.++++.+.+.+...+..|..--|+.+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444444556666666665555555555444444444444
No 345
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=20.37 E-value=4.3e+02 Score=23.04 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 009506 106 IDPNAFSTLIKLYGTAGNFDGCLNVYEEMKAIGVKPNMITYNNLLDTMGRAK 157 (533)
Q Consensus 106 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~li~~~~~~g 157 (533)
+|..+-...+..+.+.|. ..+...+..+.. .+|...-...+.++++.|
T Consensus 35 ~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~ 82 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIK 82 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhc
Confidence 455555555666666664 334444444443 245555555556666655
No 346
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=20.22 E-value=7.2e+02 Score=25.58 Aligned_cols=89 Identities=12% Similarity=0.067 Sum_probs=47.1
Q ss_pred HHhcCCh-HHHHHHHHHHHhcCCChhHHHHHHHHhhhhh--------------ccHHHHHHHHHhhhccCc---------
Q 009506 328 VMTQTPK-EELGKLVECVEKSNSKLGYVVKLLLEEQDIE--------------GDFKKEATELFNSISKDV--------- 383 (533)
Q Consensus 328 ~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~~a~~~~~~~~~~~--------- 383 (533)
-+...|. ++|.++++.+.+.+.-...+...|....... .+....|..+.+.....+
T Consensus 452 ~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~ 531 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVK 531 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHH
T ss_pred HHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccHH
Confidence 4446677 8888887765432222222223333332211 134455665555543321
Q ss_pred cchhhHHHHHH-----HHhcCCHHHHHHHHHHHHhccccCC
Q 009506 384 KKAYCNCLIDL-----CVNLNLLENACKLLELGLTLEVYTD 419 (533)
Q Consensus 384 ~~~~~~~li~~-----~~~~g~~~~A~~l~~~m~~~g~~~~ 419 (533)
+..++..|++. +.+.|+++.|++.++++ ++.|-
T Consensus 532 ~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L---~llPl 569 (661)
T 2qx5_A 532 NKEICMLLLNISSIRELYFNKQWQETLSQMELL---DLLPF 569 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT---SCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC
Confidence 23355555443 37899999999888763 45553
Done!