RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 009507
(533 letters)
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 388 bits (998), Expect = e-134
Identities = 131/225 (58%), Positives = 157/225 (69%), Gaps = 1/225 (0%)
Query: 243 GMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGS 302
GM +H+RD AL +F WLE+E+ G +TE+ ADKL EFR +Q G++ SFDTISG
Sbjct: 1 GMRAAHIRDGVALVEFLAWLEQEVPKGETITELSAADKLEEFRRQQKGYVGLSFDTISGF 60
Query: 303 GANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTRV 362
G NGAI+HY P + L+L+DSG QY+DGTTDITRTVH GEPTA +K +T V
Sbjct: 61 GPNGAIVHYSPTEESNRKISPDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLV 120
Query: 363 LQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLDYRHGTGHGVGAALNVHEGPQSISFR 422
L+GHIAL +A FP+ T G LDA AR LWK GLDY HGTGHGVG+ LNVHEGPQSIS
Sbjct: 121 LKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDYGHGTGHGVGSFLNVHEGPQSISPA 180
Query: 423 YGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVGTPNRFG 467
N PL GMI+SNEPGYY++ +GIRIENL+ V E T G
Sbjct: 181 PNN-VPLKAGMILSNEPGYYKEGKYGIRIENLVLVVEAETTEFGG 224
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 206 bits (527), Expect = 2e-61
Identities = 102/424 (24%), Positives = 158/424 (37%), Gaps = 64/424 (15%)
Query: 47 VDVIWKESRPKPPNKPIRV--HALKYAGLDVASK-----LSSLRSDLVDAGSSAIVISML 99
+ + + + + +R L + S L+ + + + +V
Sbjct: 1 LALRFADEEYRARLARLRELMEEAGLDALLLTSPSNFYYLTGFDAFGFERLQALLVP--- 57
Query: 100 DEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVDDSKVTPDVMDHLKNAGVELRPYNS 159
E +L +RG D + + +D + +D L L
Sbjct: 58 AEGEPVLFVRGRDEEAAKETSWIKLEN----VEVYEDDEDPAAPLDLLGAL---LEELGL 110
Query: 160 ILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAIEKYLTSNNNKKSKTKMHTDTTGQSGG 219
I +A + AA+ + + ++
Sbjct: 111 AGKRIGIESASIFLTLAAFERLQAALPRAELVDASDLVD---------RL---------- 151
Query: 220 PAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVAD 279
+ +K+ AE+ + + AAL + + TE ++A
Sbjct: 152 -------------RLIKSPAEIAKIRKAAEIADAALEAALEAIRPGM------TEAEIAA 192
Query: 280 KLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGT 339
+L K G SFDTI SG N A+ HY P K + L L+D G Y
Sbjct: 193 ELEYALRKG-GAEGPSFDTIVASGENAALPHYTPSDRK---LRDGDLVLIDLGGVYNGYC 248
Query: 340 TDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGL--D 397
+DITRT G+P+ ++E + VL+ A AI P G +DA AR L K G
Sbjct: 249 SDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIRP-GVTGGEVDAAARQVLEKAGYGLY 307
Query: 398 YRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYV 457
+ HGTGHGVG L+VHE PQ +S G+ T L GM+ S EPG Y G+RIE+ + V
Sbjct: 308 FLHGTGHGVGFVLDVHEHPQYLS--PGSDTTLEPGMVFSIEPGIYIPGGGGVRIEDTVLV 365
Query: 458 KEVG 461
E G
Sbjct: 366 TEDG 369
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 177 bits (451), Expect = 1e-52
Identities = 76/221 (34%), Positives = 104/221 (47%), Gaps = 16/221 (7%)
Query: 242 EGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISG 301
E M + AAAL + + TE ++A +L + G +F I
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGV------TERELAAELEAAFLARGGARGPAFPPIVA 54
Query: 302 SGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTR 361
SG N A+ HY P D L L+D GA+Y +DITRT G+PT ++E +
Sbjct: 55 SGPNAAVPHYIPSDRVLKDGD---LVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEA 111
Query: 362 VLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLD--YRHGTGHGVGAALNVHEGPQSI 419
VL+ A A+ P T G V DA AR L + G + HG GHG+G L+VH+ I
Sbjct: 112 VLEAQEAAIAAVKPGVTGGDV-DAAAREVLEEGGYGEYFPHGLGHGIG--LDVHDEGPYI 168
Query: 420 SFRYGNMTPLVEGMIVSNEPGYYE-DHAFGIRIENLLYVKE 459
S GN L GM+ + EPG Y G+RIE+ + V E
Sbjct: 169 SRG-GNDRVLEPGMVFTIEPGIYFIPGWGGVRIEDTVLVTE 208
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 136 bits (344), Expect = 4e-37
Identities = 85/224 (37%), Positives = 114/224 (50%), Gaps = 27/224 (12%)
Query: 247 SHLRDAAALA-QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGAN 305
LR AA +A + + L E I G +TE +VA +L E+ ++ G SFDTI SG N
Sbjct: 2 ELLRKAARIADKAFEELLEFIKPG--MTEREVAAEL-EYFMRKLGAEGPSFDTIVASGPN 58
Query: 306 GAIIHYKPEPGKCSVVDSKKL-----FLLDSGAQYVDG-TTDITRTVHFGEPTAREKECF 359
A+ H P +K+ L+D GA DG +DITRTV GEP+ KE +
Sbjct: 59 SALPHGVP--------SDRKIEEGDLVLIDFGA-IYDGYCSDITRTVAVGEPSDELKEIY 109
Query: 360 TRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGL-DY-RHGTGHGVGAALNVHEGPQ 417
VL+ A +A+ P +D AR + + G +Y H TGHGVG L VHE P
Sbjct: 110 EIVLEAQQAAIKAVKP-GVTAKEVDKAARDVIEEAGYGEYFIHRTGHGVG--LEVHEAP- 165
Query: 418 SISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 461
IS G+ L EGM+ + EPG Y G+RIE+ + V E G
Sbjct: 166 YISP--GSDDVLEEGMVFTIEPGIYIPGKGGVRIEDDVLVTEDG 207
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 121 bits (305), Expect = 9e-32
Identities = 71/219 (32%), Positives = 104/219 (47%), Gaps = 16/219 (7%)
Query: 247 SHLRDAAALA-QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGAN 305
+ LR AA +A E I G TE +VA + + ++ + TI GSGA
Sbjct: 2 ARLRKAAEIAEAAMAAAAEAIRPGV--TEAEVAAAIEQA--LRAAGGYPAGPTIVGSGAR 57
Query: 306 GAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTRVLQG 365
A+ HY+P+ + L L+D G Y D+TRT GEP+ ++E + V +
Sbjct: 58 TALPHYRPDDR---RLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREA 114
Query: 366 HIALDQAIFPQSTPGFVLDAFARSSL--WKIGLDYRHGTGHGVGAALNVHEGPQSISFRY 423
A A+ P +DA AR L +G ++ H TGHG+G L +HE P +
Sbjct: 115 QEAALAALRP-GVTAEEVDAAAREVLEEHGLGPNFGHRTGHGIG--LEIHEPP---VLKA 168
Query: 424 GNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVGT 462
G+ T L GM+ + EPG Y G+RIE+ + V E G
Sbjct: 169 GDDTVLEPGMVFAVEPGLYLPGGGGVRIEDTVLVTEDGP 207
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 78.4 bits (194), Expect = 2e-16
Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 39/215 (18%)
Query: 281 LLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTT 340
E+ + G ++ I +G+N AI+HY + L L+D+GA+Y +
Sbjct: 34 EFEYEFRSRG-ARLAYSYIVAAGSNAAILHYVHNDQP---LKDGDLVLIDAGAEYGGYAS 89
Query: 341 DITRTVHF-GEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARS---SLWKIGL 396
DITRT G+ T ++E + VL A A P + + R L ++G+
Sbjct: 90 DITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGI 149
Query: 397 D----------------YRHGTGHGVGAALNVHEGPQSISFRYGNMT-PLVEGMIVSNEP 439
+ HG GH +G L+VH+ RY PL GM+++ EP
Sbjct: 150 LKGDVDEIVESGAYAKFFPHGLGHYLG--LDVHDVGG--YLRYLRRARPLEPGMVITIEP 205
Query: 440 GYY------EDHAF----GIRIENLLYVKEVGTPN 464
G Y + + GIRIE+ + V E G N
Sbjct: 206 GIYFIPDLLDVPEYFRGGGIRIEDDVLVTEDGPEN 240
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 79.6 bits (196), Expect = 4e-16
Identities = 67/199 (33%), Positives = 99/199 (49%), Gaps = 21/199 (10%)
Query: 272 LTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCS--VVDSKKLFLL 329
++E ++A +L E+ +Q G SFDTI SG GA+ H GK S +V + + L
Sbjct: 158 MSEREIAAEL-EWFMRQQGAEKASFDTIVASGWRGALPH-----GKASDKIVAAGEFVTL 211
Query: 330 DSGAQYVDGTTDITRTVHF-GEPTAREKE----CFTRVLQGHIALDQAIFPQSTPGFVLD 384
D GA Y +D+TRT+ GE + E + VLQ +A AI P +D
Sbjct: 212 DFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRP-GVRCQQVD 270
Query: 385 AFARSSLWKIGLD--YRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY 442
AR + + G + H TGH +G + VHE P+ F + T L GM+++ EPG Y
Sbjct: 271 DAARRVITEAGYGDYFGHNTGHAIG--IEVHEDPR---FSPRDTTTLQPGMLLTVEPGIY 325
Query: 443 EDHAFGIRIENLLYVKEVG 461
G+RIE+++ V G
Sbjct: 326 LPGQGGVRIEDVVLVTPQG 344
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 54.7 bits (132), Expect = 6e-08
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 43/207 (20%)
Query: 295 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 353
S++TI GSG NG I+HY + + D L L+D+G +Y DITRT G+ T
Sbjct: 226 SYNTIVGSGENGCILHYTEN--ESEMRDG-DLVLIDAGCEYKGYAGDITRTFPVNGKFTP 282
Query: 354 REKECFTRVLQGHIALDQAI---FPQSTPGFVLDAFAR---SSLWKIGL----------- 396
++E + VL+ +L+ ++ P ++ V R S L K+G+
Sbjct: 283 AQREIYDIVLE---SLETSLRLYRPGTSIREVTGEVVRIMVSGLVKLGILKGDVDQLIAE 339
Query: 397 -DYR----HGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY--------- 442
+R HG H +G L+VH+ R + P GM+++ EPG Y
Sbjct: 340 NAHRPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDADVPE 394
Query: 443 EDHAFGIRIENLLYVKEVGTPNRFGGV 469
+ GIRIE+ + + E G N V
Sbjct: 395 QYRGIGIRIEDDIVITETGNENLTASV 421
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 44.5 bits (106), Expect = 6e-05
Identities = 52/220 (23%), Positives = 83/220 (37%), Gaps = 34/220 (15%)
Query: 235 VKNSAELEGMLNSHLRDAAALAQ--FWVWLEEEIHNGAKLTEVDV-ADKLLEFRSKQSGF 291
+K E+E M R+A +A + + G E+D A++ + + F
Sbjct: 5 IKTPEEIEKM-----REAGKIAAKALKE-VASLVKPGVTTLELDEIAEEFIREKGAYPAF 58
Query: 292 LD----TSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDG-TTDITRTV 346
L IS N + H P K V+ + +D GA ++DG D T
Sbjct: 59 LGYKGFPFPTCIS---VNEVVAHGIPGDKK--VLKEGDIVKIDVGA-HIDGYIGDTAITF 112
Query: 347 HFGEPTAREKECFTRVLQGHIALDQAI---FPQSTP---GFVLDAFARSSLWKIGLDYRH 400
GE + + + AL I P + G + +A S + + +
Sbjct: 113 VVGEVSDEDAKRLLEA--TKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVVRNL-- 168
Query: 401 GTGHGVGAALNVHEGPQSISFRY-GNMTPLVEGMIVSNEP 439
TGHG+G L HE P ++ G L EGM+ + EP
Sbjct: 169 -TGHGIGREL--HEEPSIPNYGKDGTGVRLKEGMVFAIEP 205
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 42.1 bits (99), Expect = 4e-04
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 336 VDG-TTDITRTVHFGE-PTAREKECFTRV--LQGHIALDQAIFPQSTPGFVLDAFARSSL 391
VDG D +R V GE ++K C + L IA+ + P G V++ A
Sbjct: 140 VDGYYGDCSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYG 199
Query: 392 WKIGLDYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEP 439
+ + + GHGVG + HE P R + PL GMI + EP
Sbjct: 200 FSVVDQF---VGHGVG--IKFHENPYVPHHRNSSKIPLAPGMIFTIEP 242
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 41.2 bits (96), Expect = 0.001
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 25/235 (10%)
Query: 233 KAVKNSAELEGMLNSHLRDAAALAQFWVW-LEEEIHNGAKLTEVDVADKLLEFRSKQSGF 291
+ +K+ E+E HLR +A + ++ + ++I G E+ A K ++ F
Sbjct: 175 RMIKSPWEIE-----HLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNF 229
Query: 292 LDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEP 351
+ F+ IS I P K L D G D+ RT GEP
Sbjct: 230 --SRFNLISVGDNFSPKIIADTTPAKVG-----DLIKFDCGIDVAGYGADLARTFVLGEP 282
Query: 352 TAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKI---GLDYRH--GTGHGV 406
++ + + GH + + PG L A S++ I GL + + GHG
Sbjct: 283 DKLTQQIYDTIRTGH----EHMLSMVAPGVKLKAVFDSTMAVIKTSGLPHYNRGHLGHGD 338
Query: 407 GAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 461
G L + E P + P GM++S E YY I +E+++ + + G
Sbjct: 339 GVFLGLEEVPFVSTQATETFCP---GMVLSLETPYYGIGVGSIMLEDMILITDSG 390
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 40.8 bits (95), Expect = 0.001
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 323 SKKLFLLDSGAQYVDG-TTDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGF 381
S L D G VDG DI RT GEP ++ + + GH + + P
Sbjct: 255 SGDLIKFDCGVD-VDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKD 313
Query: 382 VLDAFARSSLWKIGL-DYRHG-TGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEP 439
V D+ + K GL +Y G GHG G L + E P + + T GM++S E
Sbjct: 314 VFDS-TMEVIKKSGLPNYNRGHLGHGNGVFLGLEESPFVSTHATESFT---SGMVLSLET 369
Query: 440 GYYEDHAFGIRIENLLYVKEVG 461
YY + I IE+++ + + G
Sbjct: 370 PYYGYNLGSIMIEDMILINKEG 391
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 40.9 bits (95), Expect = 0.001
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 323 SKKLFLLDSGAQYVDG-TTDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGF 381
S L D G VDG DI RT GEP ++ + + GH + + P
Sbjct: 172 SGDLIKFDCGVD-VDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKD 230
Query: 382 VLDAFARSSLWKIGL-DYRHG-TGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEP 439
V D+ + K GL +Y G GHG G L + E P + + T GM++S E
Sbjct: 231 VFDS-TMEVIKKSGLPNYNRGHLGHGNGVFLGLEESPFVSTHATESFT---SGMVLSLET 286
Query: 440 GYYEDHAFGIRIENLLYVKEVG 461
YY + I IE+++ + + G
Sbjct: 287 PYYGYNLGSIMIEDMILINKEG 308
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 39.0 bits (92), Expect = 0.003
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 402 TGHGVGAALNVHEGPQSISFRYGNM--TPLVEGMIVSNEP 439
TGHGVG ++HE P I + L GM ++ EP
Sbjct: 172 TGHGVG--RSLHEEPSVILTYTDPLPNRLLRPGMTLAVEP 209
>gnl|CDD|216431 pfam01321, Creatinase_N, Creatinase/Prolidase N-terminal domain.
This family includes the N-terminal non-catalytic
domains from creatinase and prolidase. The exact
function of this domain is uncertain.
Length = 128
Score = 35.3 bits (82), Expect = 0.018
Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 12/121 (9%)
Query: 78 KLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVDDS 137
+L LR + +AG A++++ + I +L GS L+V D A L D
Sbjct: 1 RLERLRELMAEAGLDALLLTSPENIRYLTGFTGSR-------GLALVVTADGATLLTDAL 53
Query: 138 KVTPDVMDHLKNAGVELRPYN---SILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAIE 194
+ T +E+ Y+ ++ +K L + +L + + A + A+
Sbjct: 54 RYT--EAAEESVPDLEVIEYDDAEALADLLKELGLELKRLGFEGDHLTVAEYERLKEALP 111
Query: 195 K 195
Sbjct: 112 D 112
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members
of this family are putative peptidases or hydrolases
similar to Xaa-Pro aminopeptidase (pfam00557). They
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it is known to be
induced by ectoine), Mesorhizobium loti, Silicibacter
pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
putida. The exact function is unknown.
Length = 391
Score = 36.0 bits (83), Expect = 0.039
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 342 ITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLDYRHG 401
++RTV G+PT + VL+G A A P +T + +AF + L K G+
Sbjct: 259 LSRTVFLGKPTQAFLDAEKAVLEGMEAGLAAAKPGNTCEDIANAFFKV-LKKYGIHKDSR 317
Query: 402 TGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPG-YYEDHAFGI 449
TG+ +G + G +++S R G+ T L GM G + ED I
Sbjct: 318 TGYPIGLSYPPDWGERTMSLRPGDNTVLQPGMTFHFMTGLWMEDWGLEI 366
>gnl|CDD|225008 COG2097, RPL31A, Ribosomal protein L31E [Translation, ribosomal
structure and biogenesis].
Length = 89
Score = 33.1 bits (76), Expect = 0.048
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 23 AAEELKEAIAKK-NHELVYLYDLNLVDVIWKESRPKPPNKPIRVHALKYAG 72
A + +++ +A+ E V + D +L + IW+ KPP+K +RV K+
Sbjct: 30 AVKIIRKFVARHMKAEEVRI-DPSLNEKIWERGIEKPPSK-LRVRVSKFED 78
>gnl|CDD|199209 cd00463, Ribosomal_L31e, Eukaryotic/archaeal ribosomal protein
L31. Ribosomal protein L31e, which is present in
archaea and eukaryotes, binds the 23S rRNA and is one
of six protein components encircling the polypeptide
exit tunnel. It is a component of the eukaryotic 60S
(large) ribosomal subunit, and the archaeal 50S (large)
ribosomal subunit.
Length = 83
Score = 32.2 bits (74), Expect = 0.089
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 23 AAEELKEAIAKK-NHELVYLYDLNLVDVIWKESRPKPPNKPIRVHALKYAGLDVASKL 79
A +E+++ AK E V + D L + IW KPP + +RV + + L
Sbjct: 28 AIKEIRKFAAKHMKTEDVRI-DPKLNEAIWSRGIEKPPRR-VRVRVSRKREETEDAVL 83
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 33.4 bits (77), Expect = 0.29
Identities = 43/167 (25%), Positives = 61/167 (36%), Gaps = 49/167 (29%)
Query: 113 VPHSPVMYAYLIVEMDRAKL------------FVDDSKVTPDVMDHLKNAGVELRPYNSI 160
VP +PV AY ++ D AKL F +D + L AGV + ++
Sbjct: 75 VPVAPVSPAYSLLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVV---AV 131
Query: 161 LSEIKSLAAQGAQLWLDPSS--VNAAIMNTYEIAIEKYLTSNNNKKSKTKMHTDTTGQSG 218
A A L P + V+AA + KYL T+G +G
Sbjct: 132 RGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAKYLF--------------TSGSTG 177
Query: 219 GPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDAAALAQFWVWLEEE 265
P KAV N+ ML + + A +AQ W +L EE
Sbjct: 178 LP------------KAVINT---HRMLCA---NQAMIAQCWPFLTEE 206
>gnl|CDD|219385 pfam07352, Phage_Mu_Gam, Bacteriophage Mu Gam like protein. This
family consists of bacterial and phage Gam proteins. The
gam gene of bacteriophage Mu encodes a protein which
protects linear double stranded DNA from exonuclease
degradation in vitro and in vivo.
Length = 147
Score = 31.1 bits (71), Expect = 0.60
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 17/124 (13%)
Query: 161 LSEIKSLAA---QGAQLWLDPSSVN-AAIMNTYEIAIEKYLTSNNNKKSKTKMHTDTTGQ 216
+ EI++ A + W P + E +++Y +N ++ K K G
Sbjct: 19 IEEIETEANDEIARIKEWYAPELEPLKDEIEYLESLVQEYCEANRDELPKKKTLKLPYGT 78
Query: 217 SGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVD 276
G +RT P VK E +L L+ L +F + +EEI+ A E +
Sbjct: 79 VG-----WRTRP----PVVKVRGV-ESVLE-ALKS-NGLTRF-IRTKEEINKEALKAEPE 125
Query: 277 VADK 280
VA +
Sbjct: 126 VAGE 129
>gnl|CDD|237444 PRK13607, PRK13607, proline dipeptidase; Provisional.
Length = 443
Score = 31.4 bits (72), Expect = 1.4
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 305 NGAIIHY-KPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRT 345
+ A++HY K + + + S FL+D+GA+Y DITRT
Sbjct: 223 HAAVLHYTKLDHQAPAEMRS---FLIDAGAEYNGYAADITRT 261
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 29.7 bits (68), Expect = 3.0
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 402 TGHGVGAALNVHEGPQSISFRYGNM---TPLVEGMIVSNEP 439
GHG+G HE PQ I YG L EGM+ + EP
Sbjct: 167 CGHGIGRKF--HEEPQ-I-PHYGAPGDGPVLKEGMVFTIEP 203
>gnl|CDD|234916 PRK01192, PRK01192, 50S ribosomal protein L31e; Reviewed.
Length = 89
Score = 27.9 bits (63), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 50 IWKESRPKPPNKPIRVHALK 69
IW+ R KPP+K +RV K
Sbjct: 58 IWERGREKPPSK-VRVRVAK 76
>gnl|CDD|99723 cd06402, PB1_p62, The PB1 domain is an essential part of p62
scaffold protein (alias sequestosome 1,SQSTM) involved
in cell signaling, receptor internalization, and
protein turnover. The PB1 domain is a modular domain
mediating specific protein-protein interaction which
play roles in many critical cell processes. A canonical
PB1-PB1 interaction, which involves heterodimerization
of two PB1 domains, is required for the formation of
macromolecular signaling complexes ensuring specificity
and fidelity during cellular signaling. The interaction
between two PB1 domain depends on the type of PB1.
There are three types of PB1 domains: type I which
contains an OPCA motif, acidic aminoacid cluster, type
II which contains a basic cluster, and type I/II which
contains both an OPCA motif and a basic cluster.
Interactions of PB1 domains with other protein domains
have been described as noncanonical PB1-interactions.
The PB1 domain module is conserved in amoebas, fungi,
animals, and plants.
Length = 87
Score = 27.7 bits (62), Expect = 4.3
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 2 MFWH-QEAELALIPVQFLFSSDAAEELKEAIAKKNHELVYLY 42
+FW +E +L FSSD EEL A+ N + +Y
Sbjct: 50 LFWKDEEGDL------VAFSSD--EELVMALGSLNDDTFRIY 83
>gnl|CDD|200397 TIGR04146, GGGPS_Afulg, phosphoglycerol geranylgeranyltransferase.
This enzyme, known also as GGGP synthase and GGGPS,
catalyzes the stereospecific first step in the
biosynthesis of the characteristic membrane diether
lipids of archaea. Interestingly, the closest homologs
outside this family are not the functionally equivalent
enzymes of other archaea, but rather functionally
distinct bacterial enzymes.
Length = 221
Score = 28.5 bits (64), Expect = 7.6
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 465 RFGGVSYLGFEKLTFVPIQTKLVDLSLLSAAEIDWLNNYHSQVWEKVSP 513
RF G+ YL FVP D + DW+ NY + VW+KV P
Sbjct: 70 RFDGIDYL------FVPSVLNTKDPEWIVGKHKDWVRNYDNIVWDKVIP 112
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde dehydrogenase
1 and 2, ALDH family 10A8 and 10A9-like. Present in
this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family 10
member A9, respectively, and are putative dehydration-
and salt-inducible BADHs (EC 1.2.1.8) that catalyze the
oxidation of betaine aldehyde to the compatible solute
glycine betaine.
Length = 456
Score = 28.9 bits (65), Expect = 9.0
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 400 HGTGHGVGAALNVHEGPQSISF 421
GTG GA L H G ISF
Sbjct: 184 TGTGDEAGAPLAAHPGIDKISF 205
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.397
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,614,876
Number of extensions: 2725179
Number of successful extensions: 2459
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2430
Number of HSP's successfully gapped: 41
Length of query: 533
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 432
Effective length of database: 6,457,848
Effective search space: 2789790336
Effective search space used: 2789790336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.2 bits)