RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 009507
(533 letters)
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 720 bits (1861), Expect = 0.0
Identities = 226/530 (42%), Positives = 311/530 (58%), Gaps = 44/530 (8%)
Query: 17 FLFSSDAAEELKEAIAKKNHELVYLYDLNLVDVIWKESRPKPPNKPIRVHALKYAGLDVA 76
+ +D +++ + + H L+ + NLVD IW + RP+ P KP+ L Y G+
Sbjct: 122 LIIPTDYWKKMAKVLRSAGHHLIPV-KENLVDKIWTD-RPERPCKPLLTLGLDYTGISWK 179
Query: 77 SKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVDD 136
K++ LR + + V++ LDEIAWL NLRGSDV H+PV ++Y I+ ++ LF+D
Sbjct: 180 DKVADLRLKMAERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLETIMLFIDG 239
Query: 137 SKV-TPDVMDHL-------KNAGVELRPYNSILSEIKSLAAQ--GAQLWLDPSSVNAAIM 186
++ P V +HL +++ PY SILSE+K+L A + + A+
Sbjct: 240 DRIDAPSVKEHLLLDLGLEAEYRIQVHPYKSILSELKALCADLSPREKVWVSDKASYAVS 299
Query: 187 NTYEIAIEKYLTSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLN 246
T + ++ +PI +KAVKNSAE EGM
Sbjct: 300 ET--------IPKDHRC-------------------CMPYTPICIAKAVKNSAESEGMRR 332
Query: 247 SHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANG 306
+H++DA AL + + WLE+E+ G +TE+ ADK EFR +Q+ F+D SF TIS +G G
Sbjct: 333 AHIKDAVALCELFNWLEKEVPKG-GVTEISAADKAEEFRRQQADFVDLSFPTISSTGPTG 391
Query: 307 AIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTRVLQGH 366
AIIHY P P + +++L+DSGAQY DGTTD+TRT+HF PTA EKECFT VL+GH
Sbjct: 392 AIIHYAPVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFETPTAYEKECFTYVLKGH 451
Query: 367 IALDQAIFPQSTPGFVLDAFARSSLWKIGLDYRHGTGHGVGAALNVHEGPQSISFRYGNM 426
IA+ A+FP T G +LD+FARS+LW GLDY HGTGHGVG+ LNVHEGP IS++ +
Sbjct: 452 IAVSAAVFPTGTKGHLLDSFARSALWDSGLDYLHGTGHGVGSFLNVHEGPCGISYKTFSD 511
Query: 427 TPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVGTPNRFGGVSYLGFEKLTFVPIQTKL 486
PL GMIV++EPGYYED AFGIRIEN++ V V T F L E LT VPIQTK+
Sbjct: 512 EPLEAGMIVTDEPGYYEDGAFGIRIENVVLVVPVKTKYNFNNRGSLTLEPLTLVPIQTKM 571
Query: 487 VDLSLLSAAEIDWLNNYHSQVWEKVSPLLDGFARQ----WLWNNTRPVAK 532
+D+ L+ E DWLNNYH + + L RQ WL T+P++K
Sbjct: 572 IDVDSLTDKECDWLNNYHLTCRDVIGKELQKQGRQEALEWLIRETQPISK 621
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 163 bits (415), Expect = 8e-46
Identities = 92/398 (23%), Positives = 159/398 (39%), Gaps = 67/398 (16%)
Query: 74 DVASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLF 133
+ K+ LRS +AG I+++ ++ N G+ +++ RA+
Sbjct: 2 NAMEKIERLRSAFDEAGIDGILLTNEHSRRYMANFTGTA--------GVVLISKKRAQFI 53
Query: 134 VDDSKVTPDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAI 193
D + + I+ E+ + + ++
Sbjct: 54 TD-FRYVEQASKQAVGYEIVQHA-GLIIDEVAKQVKE---------------LGIQKLGF 96
Query: 194 EK-YLTSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDA 252
E+ LT ++ K + + SG + + +K +E++ + ++A
Sbjct: 97 EQDTLTYSSYSAHKEAIDAEFIPTSG---------LVEKLRLIKTDSEIKIL-----KEA 142
Query: 253 AALAQF-WVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHY 311
A +A + + I G ++E++V+++L EF ++ G +SFD I SG A+ H
Sbjct: 143 AQIADAAFEHILSFIRPG--VSEIEVSNEL-EFFMRKQGATSSSFDIIVASGLRSALPHG 199
Query: 312 KP-----EPGKCSVVDSKKLFLLDSGAQYVDG-TTDITRTVHFGEPTAREKECFTRVLQG 365
E G LD GA Y G +DITRT+ GEP+ + KE + VL+
Sbjct: 200 VASEKVIETGD--------FVTLDFGAYY-KGYCSDITRTIAVGEPSDKLKEIYNIVLEA 250
Query: 366 HIALDQAIFPQSTPGFVLDAFARSSLWKIGLD--YRHGTGHGVGAALNVHEGPQSISFRY 423
+ I G DA R + + G + H TGHG+G L +HE P +
Sbjct: 251 QLRGVNGIKA-GLTGREADALTRDYITEKGYGEYFGHSTGHGIG--LEIHEAP---GLAF 304
Query: 424 GNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 461
+ T L GM V+ EPG Y G+RIE+ + V G
Sbjct: 305 RSDTVLEPGMAVTVEPGIYIPGIGGVRIEDDIIVTSEG 342
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 163 bits (414), Expect = 2e-45
Identities = 89/391 (22%), Positives = 148/391 (37%), Gaps = 49/391 (12%)
Query: 76 ASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVD 135
A +L++ + AG + +VI+ ++ +L+ R + L++ V
Sbjct: 16 ARRLAAAAAATEQAGLAGLVITPGYDLRYLIGSRAD--TFERL--TALVLPASGVPTIVL 71
Query: 136 DSKVTPDVMDHL-KNAGVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAIE 194
+ + + GV +R + + A + A+
Sbjct: 72 PRLELASLKESAASDLGVCVRDW----VDGDDPYQLVAVALGGAPAA---------TAVT 118
Query: 195 KYLTSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDAAA 254
+ + +H + G V T + + VK +AE++ + A A
Sbjct: 119 DSMPA---------LHLLPLADALGVLPVLATDVLRQLRMVKEAAEVDAL-----AKAGA 164
Query: 255 LA-QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKP 313
+ + + G TE VA + G +F I GSG +GA H+
Sbjct: 165 AIDRVHARVPAFLVPG--RTEAQVAADI-AEAIVAEGHSAVAF-VIVGSGPHGADPHHGY 220
Query: 314 EPGKCSVVDSKKLFLLDSGAQYVDG-TTDITRTVHFGEPTAREKECFTRVLQGHIALDQA 372
+ + ++D G Y G +D TRT G+P+ + ++ + + A A
Sbjct: 221 SD---RKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVDA 277
Query: 373 IFPQSTPGFVLDAFARSSLWKIGL--DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLV 430
+ P +DA AR L GL + H TGHG+G L VHE P GN PLV
Sbjct: 278 VRP-GVTAAQVDAAARDVLADAGLAEYFVHRTGHGIG--LCVHEEP---YIVAGNELPLV 331
Query: 431 EGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 461
GM S EPG Y +G RIE+++ V E G
Sbjct: 332 AGMAFSIEPGIYFPGRWGARIEDIVVVTENG 362
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 161 bits (411), Expect = 2e-45
Identities = 89/395 (22%), Positives = 150/395 (37%), Gaps = 69/395 (17%)
Query: 76 ASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVD 135
K+ + + A++I+ + ++ Y+++ + A L+V
Sbjct: 5 NEKVKKIIEFMDKNSIDAVLIAKNPNVYYISGASPLA-------GGYILITGESATLYVP 57
Query: 136 DSKVTPDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAIEK 195
+ Y K + + + A+ + IE
Sbjct: 58 E------------------LEYE----MAKEESNIPVEKFKKMDEFYKALEGIKSLGIES 95
Query: 196 YLTSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDAAAL 255
L ++ K K + + R +K+ E++ + A +
Sbjct: 96 SLPYGFIEELKKKANIKEFKKVDDVIRDMR--------IIKSEKEIKII-----EKACEI 142
Query: 256 AQF-WVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKP- 313
A + EEI G E +VA K+ E+ K +G +FDTI SG A+ H
Sbjct: 143 ADKAVMAAIEEITEG--KKEREVAAKV-EYLMKMNGAEKPAFDTIIASGYRSALPHGVAS 199
Query: 314 ----EPGKCSVVDSKKLFLLDSGAQYVDG-TTDITRTVHFGEPTAREKECFTRVLQGHIA 368
E G L ++D GA Y +DITRT+ G P ++KE + VL+
Sbjct: 200 DKRIERGD--------LVVIDLGALY-QHYNSDITRTIVVGSPNEKQKEIYEIVLEAQKK 250
Query: 369 LDQAIFPQSTPGFVLDAFARSSLWKIGL-DY-RHGTGHGVGAALNVHEGPQSISFRYGNM 426
++ P LD+ AR+ + + G +Y H GHGVG L VHE P +
Sbjct: 251 AVESAKP-GITAKELDSIARNIIAEYGYGEYFNHSLGHGVG--LEVHEWP---RVSQYDE 304
Query: 427 TPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 461
T L EGM+++ EPG Y G+RIE+ + + + G
Sbjct: 305 TVLREGMVITIEPGIYIPKIGGVRIEDTILITKNG 339
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 160 bits (408), Expect = 6e-45
Identities = 86/393 (21%), Positives = 145/393 (36%), Gaps = 61/393 (15%)
Query: 78 KLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVDDS 137
+L L + G +IS + +L LR + + A L V + F+ S
Sbjct: 2 RLEKFIHLLGERGFDGALISPGTNLYYLTGLRLHE-VGERL--AILAVSAEGDYRFLAPS 58
Query: 138 KVTPDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAIEKYL 197
V ++ + L +L + I IE +
Sbjct: 59 LYENVV------NNFPATFWHDGENPYAKLREILEELGISKGR----------ILIEDTM 102
Query: 198 TSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDAAALA- 256
+ + G +S I + +K+ E++ M A+ +A
Sbjct: 103 RA---------DWLIGIMKLGKFTFQPLSSLIKELRMIKDKEEVKMM-----EHASRIAD 148
Query: 257 QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKP--- 313
+ + + G + E ++A K+ E ++ +F+ I SG N A H++P
Sbjct: 149 KVFEEILTWDLIG--MKERELALKI-ELLIRELS-DGIAFEPIVASGENAANPHHEPGER 204
Query: 314 --EPGKCSVVDSKKLFLLDSGAQYVDG-TTDITRTVHFGEPTAREKECFTRVLQGHIALD 370
G + +LD GA++ G +DITRT+ GE R + + V +
Sbjct: 205 KIRKGD--------IIILDYGARW-KGYCSDITRTIGLGELDERLVKIYEVVKDAQESAF 255
Query: 371 QAIFPQSTPGFVLDAFARSSLWKIGL-DY-RHGTGHGVGAALNVHEGPQSISFRYGNMTP 428
+A+ +D+ AR + K G +Y H TGHG+G L+VHE P
Sbjct: 256 KAVREGIK-AKDVDSRAREVISKAGYGEYFIHRTGHGLG--LDVHEEP---YIGPDGEVI 309
Query: 429 LVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 461
L GM + EPG Y G+RIE+ + V E
Sbjct: 310 LKNGMTFTIEPGIYVPGLGGVRIEDDIVVDEGK 342
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 157 bits (400), Expect = 1e-43
Identities = 91/400 (22%), Positives = 159/400 (39%), Gaps = 71/400 (17%)
Query: 77 SKLSSLRSDLVDAGSSAIVISMLDEIA-----WLLNLRGSDVPHSPVMYAYLIVEMDRAK 131
+ L + + G A +I ++ A + GS + +++ +
Sbjct: 2 DRSERLIQLISEEGIDAFLIMNIENSARASSVYFSGFTGSF--------SIILISENTRL 53
Query: 132 LFVDDSKVTPDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEI 191
L D S+ T + V + +K + I
Sbjct: 54 LITD-SRYTVQAKQE-TDFEVREVKGGDFIDVLKKTVND---------------LKIKTI 96
Query: 192 AIEK-YLTSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLR 250
A+E+ ++ + ++ + R VK+ E+E ++
Sbjct: 97 ALEEERVSLSLFRRISSAFGDRKFIGIDDEVKQMR--------MVKDEGEIE-----KIK 143
Query: 251 DAAALAQF-WVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAII 309
A +++ ++ ++I G +TE ++A L E+ ++ G +FDTI SG A+
Sbjct: 144 QAIEISERAFLETVQQIRAG--MTEKEIAALL-EYTMRKEGAEGVAFDTIVASGCRSALP 200
Query: 310 HYKP-----EPGKCSVVDSKKLFLLDSGAQYVDG-TTDITRTVHFGEPTAREKECFTRVL 363
H K E G + ++D GA Y + DITR V GEP+ KE + VL
Sbjct: 201 HGKASDKVVERGD--------VIVIDFGATY-ENYCADITRVVSIGEPSDEVKEVHSIVL 251
Query: 364 QGHIALDQAIFPQSTPGFVLDAFARSSLWKIGL-DY-RHGTGHGVGAALNVHEGPQSISF 421
+ + G +LD+ AR + + G ++ H GHG+G L VHEGP +
Sbjct: 252 EAQERALKIAKA-GVTGKLLDSVAREFIREKGYGEFFGHSLGHGIG--LEVHEGP---AI 305
Query: 422 RYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 461
+ N +PL E ++ + EPG Y + FGIRIE + +KE G
Sbjct: 306 SFRNDSPLPENVVFTVEPGIYLEGKFGIRIEEDVVLKEQG 345
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 138 bits (351), Expect = 2e-36
Identities = 46/248 (18%), Positives = 76/248 (30%), Gaps = 39/248 (15%)
Query: 234 AVKNSAELEGMLNSHLRDAAALAQF-WVWLEEEIHNGAKLTEVDVADKLLEFRSKQ---- 288
+K++ E +R A +A + E + + E +VA + +
Sbjct: 156 MIKSAEEHV-----MIRHGARIADIGGAAVVEALGDQV--PEYEVALHATQAMVRAIADT 208
Query: 289 -SGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKL-----FLLDSGAQYVDG-TTD 341
T SG N H ++K+ L+ + G T
Sbjct: 209 FEDVELMDTWTWFQSGINTDGAHNPV--------TTRKVNKGDILSLNCFP-MIAGYYTA 259
Query: 342 ITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGL--DYR 399
+ RT+ + + ++ H A + I P + + K +
Sbjct: 260 LERTLFLDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDI-ARELNEIFLKHDVLQYRT 318
Query: 400 HGTGHGVGAALNVHEGP--QSISFRYGNMTPLVEGMIVSNEPGYYEDH----AFGIRIEN 453
G GH G H + R T L GM+VS EP A G R +
Sbjct: 319 FGYGHSFG--TLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIMLPEGLPGAGGYREHD 376
Query: 454 LLYVKEVG 461
+L V E G
Sbjct: 377 ILIVNENG 384
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 131 bits (331), Expect = 1e-33
Identities = 43/250 (17%), Positives = 76/250 (30%), Gaps = 43/250 (17%)
Query: 234 AVKNSAELEGMLNSHLRDAAALAQ--FWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGF 291
+K+S E + +R+ A ++ I G E +VA +
Sbjct: 156 VIKSSEEZB-----LIRZGARISDIGGAATAAA-ISAGV--PEYEVAIAT-TBAMVRZIA 206
Query: 292 LDTSFDTI------SGSGANGAIIHYKPEPGKCSVVDSKKL-----FLLDSGAQYVDG-T 339
B + + SG N H + + L+ G
Sbjct: 207 RBFPYVELMDTWIWFQSGINTDGAHNPV--------TBRVVZRGDILSLNCFPMI-FGYY 257
Query: 340 TDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGL--D 397
T + RT+ Z Z + + H Z I P + + + + L
Sbjct: 258 TALERTLFLZZVBDASLZIWZKNTAVHRRGLZLIKPGARCKDI-ASELNBMYRZWDLLRY 316
Query: 398 YRHGTGHGVGAALNVHEGP--QSISFRYGNMTPLVEGMIVSNEPGYYEDH----AFGIRI 451
G GH G + H + R T L GM+VS EP + A G R
Sbjct: 317 RTFGYGHSFG--VLBHYYGREAGVELREDIZTVLEPGMVVSMEPMVMBPEGEPGAGGYRE 374
Query: 452 ENLLYVKEVG 461
++L +KE
Sbjct: 375 HDILVIKENB 384
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 121 bits (304), Expect = 7e-30
Identities = 39/265 (14%), Positives = 87/265 (32%), Gaps = 38/265 (14%)
Query: 226 TSPIAFSKAVKNSAELEGMLN-SHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKL--- 281
+ +A A+K+ EL + S + A F L I G K+T +D++
Sbjct: 168 SLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESL 227
Query: 282 -----------LEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLD 330
L+ L+ + I SG + + + D + L
Sbjct: 228 IDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGD---VVLCS 284
Query: 331 SGAQYVDGTTDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSS 390
G +Y +++ RT F P + +++ ++ ++ L + + G +
Sbjct: 285 LGFRYKSYCSNVGRTYLFD-PDSEQQKNYSFLVALQKKLFEYCRDGAVIGDI-YTKILGL 342
Query: 391 LWKIGLDYR----HGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGY----- 441
+ D G G+G + E ++ + N L GM ++ G+
Sbjct: 343 IRAKRPDLEPNFVRNLGAGIG--IEFRESSLLVNAK--NPRVLQAGMTLNLSIGFGNLIN 398
Query: 442 -----YEDHAFGIRIENLLYVKEVG 461
+ + + + + + +
Sbjct: 399 PHPKNSQSKEYALLLIDTIQITRSD 423
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 111 bits (279), Expect = 2e-26
Identities = 68/419 (16%), Positives = 130/419 (31%), Gaps = 50/419 (11%)
Query: 76 ASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDV--PHSPVMYAYLIVEMDRAKLF 133
+ L +V G + +++ I + + + H+P L + +
Sbjct: 80 RFRHRRLTDHVVARGYAGLLMFDPLNIRYATDSTNMQLWNTHNPFRATLLCAD---GYMV 136
Query: 134 VDDSKVTPDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAI 193
+ D K +P + + E R + + A N I +
Sbjct: 137 MWDYKNSPFLSEFN-PLVREQRAGADLFYFDRGDKVDVAADVFA---------NEVRILL 186
Query: 194 EKYLTSNNNK-KSKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDA 252
+ K +H Q+ G + +++VK E+ M +
Sbjct: 187 RDHAPGLRRLAVDKVMLHGLRALQAQGFEIMDGEEVTEKARSVKGPDEIRAMRCASHACE 246
Query: 253 AALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYK 312
A+ + + ++ +G E D+ +L + + G + + SG +
Sbjct: 247 VAVRKMEDFARSKVGDG-VTCENDIWA-ILHSENVRRGG-EWIETRLLASGPRSNPWFQE 303
Query: 313 PEPGKCSVVDSKKLFLLDSGAQYVDGT-TDITRTVHFGEPTAREKECFTRVLQGHIALDQ 371
P V ++ D+ G TDI+R+ G+ R + G +
Sbjct: 304 CGP---RVCQRNEIISFDTDLVGAYGICTDISRSWWIGDQKPRADMIYAMQH-GVEHIRT 359
Query: 372 AIFPQSTPGFV---LDAFARSSLWKIGLDYRHGTGHGVGAALNVHEGPQSISFRY----- 423
+ PG + L A K HGVG E P +++
Sbjct: 360 NM-EMLKPGVMIPELSANTHVLDAKFQKQKYGCLMHGVGL---CDEWP-LVAYPDHAVAG 414
Query: 424 GNMTPLVEGMIVSNEPG-YYEDHAFGIRIENLLYVKEVGTPNRFGGVSYLGFEKLTFVP 481
PL GM + E E F I++E+ + + T + G+E LT P
Sbjct: 415 AYDYPLEPGMTLCVEALISEEGGDFSIKLEDQVLI----TED--------GYENLTKYP 461
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 110 bits (277), Expect = 3e-26
Identities = 30/277 (10%), Positives = 79/277 (28%), Gaps = 55/277 (19%)
Query: 226 TSPIAFSKAVKNSAELEGMLNSHLRDAAALA-----QFWVWLEEEIHNGAKLTEVDVADK 280
+ ++ VK+ E + ++ + + + K+T ++DK
Sbjct: 168 SLGLSKVWEVKDVNEQAFL-----SVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDK 222
Query: 281 L---------------------LEFRSKQSGFLDTSFDTISGSGANGAI-IHYKPEPGKC 318
+ LD ++ I SG + + + +
Sbjct: 223 IENKIDDVKFLKQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQL 282
Query: 319 SVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQST 378
L G +Y + ++ITRT +P+ + +L + +
Sbjct: 283 YGNG---CILASCGIRYNNYCSNITRTF-LIDPSEEMANNYDFLLT---LQKEIVTNILK 335
Query: 379 PGFVL---DAFARSSLWKIGLDYR----HGTGHGVGAALNVHEGPQSISFRYGNMTPLVE 431
PG + K + G +G L + ++ + + +
Sbjct: 336 PGRTPKEVYESVIEYIEKTKPELVPNFTKNIGSLIG--LEFRDSNFILNVK-NDYRKIQR 392
Query: 432 GMIVSNEPGYYE------DHAFGIRIENLLYVKEVGT 462
G + G+ + + +++ + + + T
Sbjct: 393 GDCFNISFGFNNLKDSQSANNYALQLADTVQIPLDET 429
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 93.8 bits (234), Expect = 9e-21
Identities = 56/203 (27%), Positives = 86/203 (42%), Gaps = 41/203 (20%)
Query: 281 LLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDG-T 339
+F K SG +F+TI SG N ++HY+ + + + L LLD GAQ D
Sbjct: 210 QFDFTLKSSGIKHHAFNTILASGKNATVLHYED---NDAQIQNGDLVLLDLGAQK-DYYN 265
Query: 340 TDITRTV----HFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAF-------AR 388
DI+ T F ++R+K+ + VL + PG A
Sbjct: 266 ADISYTFPANGTF---SSRQKQIYNIVLNAL----KETTEIIKPGLKFAALNEHAKKVLA 318
Query: 389 SSLWKIGL-----DYR----HGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEP 439
+GL + HG H +G L+ H+ Y + L EGM+++ EP
Sbjct: 319 EGCKAVGLIQEDEELSKYYYHGVSHFLG--LDTHDVGT-----YKD-RVLEEGMVITIEP 370
Query: 440 G-YYEDHAFGIRIENLLYVKEVG 461
G Y E+ + GIRIE+ + V + G
Sbjct: 371 GLYIEEESIGIRIEDDILVTKDG 393
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 80.0 bits (198), Expect = 3e-16
Identities = 53/210 (25%), Positives = 80/210 (38%), Gaps = 53/210 (25%)
Query: 281 LLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDG-T 339
+ + G S++TI GSG NG I+HY + L L+D+G +Y G
Sbjct: 214 EIHHEFNRHGARYPSYNTIVGSGENGCILHYTE---NECEMRDGDLVLIDAGCEY-KGYA 269
Query: 340 TDITRTV----HFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAF-------AR 388
DITRT F T ++E + VL+ + PG +
Sbjct: 270 GDITRTFPVNGKF---TQAQREIYDIVLESL----ETSLRLYRPGTSILEVTGEVVRIMV 322
Query: 389 SSLWKIGL------------DYR----HGTGHGVGAALNVHEGPQSISFRYGNMTPLVEG 432
S L K+G+ +R HG H +G L+VH+ + L G
Sbjct: 323 SGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLG--LDVHDVGV---YGQDRSRILEPG 377
Query: 433 MIVSNEPGYY---------EDHAFGIRIEN 453
M+++ PG Y + GIRIE+
Sbjct: 378 MVLTVAPGLYIAPDAEVPEQYRGIGIRIED 407
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 69.8 bits (171), Expect = 7e-13
Identities = 48/209 (22%), Positives = 78/209 (37%), Gaps = 47/209 (22%)
Query: 272 LTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGK-CSVVDSKKLFLLD 330
+ E ++ + + G +S+ I GSG N A++HY + + + L D
Sbjct: 218 MKEYELESLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFD 277
Query: 331 SGAQYVDG-TTDITRTVHF---GEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAF 386
G +Y +DIT + F G+ TA +K + VL+ A+ A+ PG
Sbjct: 278 MGGEY-YCFASDITCS--FPANGKFTADQKAVYEAVLRSSRAVMGAM----KPGVWWPDM 330
Query: 387 ARSS-------LWKIGLD----------------YRHGTGHGVGAALNVH---------E 414
R + L +G+ HG GH +G ++VH E
Sbjct: 331 HRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHGLGHFLG--IDVHDVGGYPEGVE 388
Query: 415 GPQSISFRYGNMT-PLVEGMIVSNEPGYY 442
R L GM+++ EPG Y
Sbjct: 389 RIDEPGLRSLRTARHLQPGMVLTVEPGIY 417
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 63.2 bits (154), Expect = 8e-11
Identities = 39/186 (20%), Positives = 55/186 (29%), Gaps = 45/186 (24%)
Query: 293 DTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPT 352
D + I N AI+HY + + FL+D+GA + DITRT F
Sbjct: 209 DNPYGNIVALNENCAILHY--THFDRVAPATHRSFLIDAGANFNGYAADITRTYDFT-GE 265
Query: 353 AREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSS-------LWKIGL--------- 396
E + Q IAL + PG + L +
Sbjct: 266 GEFAELVATMKQHQIALMNQL----APGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIV 321
Query: 397 ---DYR----HGTGHGVGAALNVH------------EGPQSISFRYGNMT-PLVEGMIVS 436
HG GH +G L VH + T + + +
Sbjct: 322 AKGITSTFFPHGLGHHIG--LQVHDVGGFMADEQGAHQEPPEGHPFLRCTRKIEANQVFT 379
Query: 437 NEPGYY 442
EPG Y
Sbjct: 380 IEPGLY 385
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 62.4 bits (152), Expect = 1e-10
Identities = 39/191 (20%), Positives = 62/191 (32%), Gaps = 52/191 (27%)
Query: 293 DTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDG-TTDITRTVHF--- 348
D + +I + +I+HY + FL+D+GA Y G DITRT +
Sbjct: 209 DVPYTSIVALNEHASILHY--MQCDTVAPKESRSFLIDAGANY-HGYAADITRT--YAQE 263
Query: 349 GEPTARE-KECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSS-------LWKIGL---- 396
G + ++ V + + L ++ PG + L G+
Sbjct: 264 GVHNSAMFRDLIQAVDKVTLTLVDSL----KPGVAYTDIHLLAHDGIAQILHDTGMVNLT 319
Query: 397 --------DYR----HGTGHGVGAALNVH------------EGPQSISFRYGNMT-PLVE 431
R HG GH +G L VH P + T +
Sbjct: 320 PPEIVEMGITRTFFPHGIGHFLG--LQVHDVGGLVNDDRGTPKPAPDDHPFLRCTRMVEA 377
Query: 432 GMIVSNEPGYY 442
+ + EPG Y
Sbjct: 378 RQVFTIEPGLY 388
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 6e-06
Identities = 85/491 (17%), Positives = 143/491 (29%), Gaps = 193/491 (39%)
Query: 9 ELALI------PVQFLFSSDAAEELKEAIAKKNHELVYLYDLNLVDVI-WKESRPKPPNK 61
EL + V L +AE L E + + + ++ L +++ W E+ P+K
Sbjct: 172 ELRDLYQTYHVLVGDLIKF-SAETLSE-LIRTTLDAEKVFTQGL-NILEWLENPSNTPDK 228
Query: 62 PIRVHA------------------LKYAGLDVASKLSSLRS------DLVDAGSSAIVIS 97
+ K G S L+ LV +A+ I+
Sbjct: 229 DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV----TAVAIA 284
Query: 98 MLDE-----------IAWL--LNLRGSDV-PH---SPVMYAYLIVEMDRAKLFVDDSKVT 140
D I L + +R + P+ P + +++++
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED----------SLENNEGV 334
Query: 141 PDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLD------PSS--VNAAIMNTYEIA 192
P M LS I +L + Q +++ P+ V +++N +
Sbjct: 335 PSPM----------------LS-ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377
Query: 193 I----EKYLTSNNN--KKSKTKMHTDTTGQSGGPAG----VFRTS--PIA--FSKAVKNS 238
+ + L N +K+K D QS P F P+A F +S
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLD---QSRIPFSERKLKFSNRFLPVASPF-----HS 429
Query: 239 AELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDT 298
L A+ L + + D+ + F +K +DT
Sbjct: 430 --------HLLVPASDL------INK-----------DLVKNNVSFNAKDIQI--PVYDT 462
Query: 299 ISGS---GANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITR-TVHFGEPTAR 354
GS +G+I +VD I R V +
Sbjct: 463 FDGSDLRVLSGSISE--------RIVD------------------CIIRLPVKW------ 490
Query: 355 EKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLDYRHGTGHGVGAALNVHE 414
E + HI LD F PG S L + + GTG V A +
Sbjct: 491 ETTTQFKAT--HI-LD---F---GPGGA------SGLGVLTHRNKDGTGVRVIVAGTLDI 535
Query: 415 GPQSISFRYGN 425
P YG
Sbjct: 536 NPDD---DYGF 543
Score = 37.7 bits (87), Expect = 0.011
Identities = 47/273 (17%), Positives = 79/273 (28%), Gaps = 95/273 (34%)
Query: 151 GVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAA---IMNTYEIAIEKYLTSNNNKKSKT 207
G++L Y + S AAQ +W N A +TY +I + NN + T
Sbjct: 1632 GMDL--YKT------SKAAQ--DVW------NRADNHFKDTYGFSILDIVI--NNPVNLT 1673
Query: 208 KMHTDTTGQS---GGPAGVFRTSPIAFSKAVKNSAELEGMLNSH--------LRD----- 251
G+ A +F T K K E+ S+ L
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 252 ----AAALAQFWVWLEEEI---------HN-G-----AKLTEV-DVAD--KLLEFRSKQS 289
A F + + H+ G A L +V + +++ +R
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM-- 1791
Query: 290 GFLDTSFDTISGSGANGAIIHYKPEPGK-------------CSVVDSKKLFLLD------ 330
+ + +N +I PG+ V + +L++
Sbjct: 1792 -TMQVAVPRDELGRSNYGMI--AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 331 SGAQYVDGTTDITRTVHFGEPTAREKECFTRVL 363
QYV G+ A + T VL
Sbjct: 1849 ENQQYVAA----------GDLRALDT--VTNVL 1869
Score = 30.0 bits (67), Expect = 2.9
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 42/121 (34%)
Query: 340 TDITR------TVHFGEPTARE-KE-----CFTRVLQGHIALDQAIFPQST--------- 378
DI T+HFG + +E F ++ G + ++ IF +
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK-IFKEINEHSTSYTFR 1720
Query: 379 -PGFVLDA--------FARS-SLWKI----GLDYRHGT--GHGVG--AALNVHEGPQSIS 420
+L A + ++ GL T GH +G AAL +S
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL-ASLA-DVMS 1778
Query: 421 F 421
Sbjct: 1779 I 1779
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 7e-06
Identities = 78/595 (13%), Positives = 158/595 (26%), Gaps = 209/595 (35%)
Query: 22 DAAEELKEAIAKKNHELVYLYDLNLVDVIWKESRPKPPNKPIRVHALKYAGLDVASKLSS 81
D + K ++K+ +D I + L
Sbjct: 37 DVQDMPKSILSKEE-----------IDHIIMS-----KDAVSGTLRL----FWT------ 70
Query: 82 LRSDLVDAGSSAI---VISMLD-EIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVDDS 137
L+ + V +L +L++ P M + +E R +L+ D+
Sbjct: 71 ----LLSKQEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRMYIE-QRDRLYNDNQ 124
Query: 138 KVTP------DVMDHLKNAGVELRPYNSILSEI-------KS-LAAQGAQ---------- 173
L+ A +ELRP ++L I K+ +A
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 174 --LWLDPSSVNAA-----IMNTYEIAIEKYLTSNNNKKSKTKMHTDTTGQSGGPAGVFRT 226
WL+ + N+ ++ I+ TS ++ S K+ +
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--------EL 234
Query: 227 SPIAFSKAVKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRS 286
+ SK +N +L L + V +
Sbjct: 235 RRLLKSKPYENC-----LLV--LLN--------VQNAKAW-------------NAFNLSC 266
Query: 287 KQSGFLDTSFD-TISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVD-GTTDITR 344
K L T+ ++ + H + ++ + LL +Y+D D+ R
Sbjct: 267 K---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL---LKYLDCRPQDLPR 320
Query: 345 TVHFGEPTA--------REKEC------------FTRVLQGHI-ALDQ----------AI 373
V P R+ T +++ + L+ ++
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 374 FPQST------------------PGFVLDAFARSSLWKIGLDYRHGTGHGVGAALNVHEG 415
FP S V++ + SL + + T +++
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKEST-------ISIPSI 431
Query: 416 PQSISFRYGNMTPLVEGMIVS--NEPGYYEDHAFGI-RIENLLYVKEVGTPNRFGGVSYL 472
+ + N L IV N P ++ ++ Y S++
Sbjct: 432 YLELKVKLENEYAL-HRSIVDHYNIPKTFDSDDLIPPYLDQYFY-------------SHI 477
Query: 473 GF--------EKLTFVPIQTKLVDLSLLSAAEIDWLNN---YHSQVWEKVSPLLD 516
G E++T +D +L + S W +L+
Sbjct: 478 GHHLKNIEHPERMTLFR--MVFLDF--------RFLEQKIRHDSTAWNASGSILN 522
Score = 47.9 bits (113), Expect = 7e-06
Identities = 56/399 (14%), Positives = 118/399 (29%), Gaps = 133/399 (33%)
Query: 9 ELALIPVQFLFSSDAAEEL-------------KEAIAKKNHELVYLYDLNLVDVIWKESR 55
++L + D + L +E + + +I + R
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV--LTTNPRR-------LSIIAESIR 338
Query: 56 PKPPNKPIRVHALKYAGLDVASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPH 115
+ K+ D KL+++ ++ L+ R
Sbjct: 339 ----DGLATWDNWKHVNCD---KLTTIIESSLNV---------LEP----AEYRK----- 373
Query: 116 SPVMYAYLIVEMDRAKLFVDDSKVTPDVMDHLKNAGVELRPYNSILSEI--KSLAAQGAQ 173
M+ L V F + + ++ + ++ +++++ SL +
Sbjct: 374 ---MFDRLSV-------FPPSAHIPTILLSLIWFDVIKSDV-MVVVNKLHKYSLVEK--- 419
Query: 174 LWLDPSSVNAAIMNTYEI-AIEKYLTSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAFS 232
P +T I +I YL +++ +H
Sbjct: 420 ---QPKE------STISIPSI--YLELKVKLENEYALH---------------------- 446
Query: 233 KAVKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFL 292
+++ + + +S L Q++ H G L ++ +++ FR FL
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYS-----HIGHHLKNIEHPERMTLFRMV---FL 498
Query: 293 DTSFDTISGSGANGAIIHYKPEPGKCSVV-----DSK--KLFLLDSGAQYVDGTTDITRT 345
D F I H + K K ++ D+ +Y I
Sbjct: 499 DFRF-------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--- 548
Query: 346 VHF----GEPTAREKECFTRVLQGHIAL---DQAIFPQS 377
+ F E K +T +L+ IAL D+AIF ++
Sbjct: 549 LDFLPKIEENLICSK--YTDLLR--IALMAEDEAIFEEA 583
Score = 44.1 bits (103), Expect = 1e-04
Identities = 53/351 (15%), Positives = 102/351 (29%), Gaps = 86/351 (24%)
Query: 231 FSKAVKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSG 290
K++ + E++ ++ S + L FW L ++ + V + L
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS----KQEEMVQKFVEEVL----RINYK 92
Query: 291 FLDTSF--DTISGSGANGAIIHYK------PEP-GKCSVVDSKKLFLLDSGAQYVDGTTD 341
FL + + S I + + K +V + L + +
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 342 ITRTVH----FGEPTAREKECFT-RVLQGH---IALDQAIF-----PQSTPGFVLDAFAR 388
+ + G K V + +D IF ++P VL+
Sbjct: 153 V--LIDGVLGSG------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-- 202
Query: 389 SSLW-KIGLDYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDH-- 445
L +I ++ + H L +H + R P ++V +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLKSKPYENCLLVL-------LNVQ 254
Query: 446 ------AFGIRIENLLYVKEVGTPNRFGGVSY----LGFEKLTFVPIQTKLVDLSLLSAA 495
AF + + LL + + + L +T P + SLL
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV----KSLLL-- 308
Query: 496 EIDWLNNYHS----QVWEKVSPLL---------DGFARQWLWNNTRPVAKD 533
+L+ +V +P DG A W+N + V D
Sbjct: 309 --KYLDCRPQDLPREV-LTTNPRRLSIIAESIRDGLAT---WDNWKHVNCD 353
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics,
midwest center for structu genomics, hydrolase; HET:
MSE; 2.15A {Corynebacterium diphtheriae}
Length = 135
Score = 37.3 bits (87), Expect = 0.003
Identities = 15/122 (12%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 74 DVASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLF 133
+ +L + L A++++ L I +L GS+ A LI+ D +
Sbjct: 9 RFLQRRRALSAQLAAKRIDAMLVTHLTHIRYLSGFTGSN--------AALIINKDLSARI 60
Query: 134 VDDSKVTPDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAI 193
D + + + + +E + + S ++ + ++ + +
Sbjct: 61 STDGRYITQIAEQVP--DIESLMARNCAPALLSDINGPKRVGFEADYLSVSQCEELRKSA 118
Query: 194 EK 195
Sbjct: 119 GS 120
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 38.0 bits (88), Expect = 0.006
Identities = 42/215 (19%), Positives = 67/215 (31%), Gaps = 21/215 (9%)
Query: 236 KNSAELEGMLNSHLRDAA-ALAQFWVWLEEEIHNGAKLTEVDV-ADKLLEFRSKQSGFLD 293
+ R+AA A Q ++ I G + E+ + K++G
Sbjct: 161 ASEEIWNDF-----REAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNA 215
Query: 294 -TSFDT-ISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDG-TTDITRTVHFGE 350
+F T S N HY P G +V+ + +D G + G D TV F
Sbjct: 216 GLAFPTGCS---LNNCAAHYTPNAGDTTVLQYDDICKIDFGTH-ISGRIIDCAFTVTFNP 271
Query: 351 PTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARS-SLWKIGLDY-----RHGTGH 404
+ I G + S + G Y R+ GH
Sbjct: 272 KYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGH 331
Query: 405 GVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEP 439
+G +H G + G T + EG + + E
Sbjct: 332 SIG-QYRIHAGKTVPIVKGGEATRMEEGEVYAIET 365
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 37.1 bits (86), Expect = 0.013
Identities = 38/221 (17%), Positives = 63/221 (28%), Gaps = 33/221 (14%)
Query: 236 KNSAELEGMLNSHLRDAA-ALAQFWVWLEEEIHNGAKLTEVD-VADKLLEFRSKQSGFLD 293
S L+ R AA A + ++ + G L E+ + K
Sbjct: 42 TESDILQDA-----RRAAEAHRRARYRVQSIVRPGITLLEIVRSIEDSTRTLLKGERNNG 96
Query: 294 TSFDT-ISGSGANGAIIHYKPEPGKCSVVDSKK-LFLLDSGAQYVDG-TTDITRTVHFGE 350
F +S N HY PG+ +V + + +D G DG D TV F E
Sbjct: 97 IGFPAGMS---MNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTH-SDGRIMDSAFTVAFKE 152
Query: 351 PTAREKECFTRVLQGHIALDQAIF------PQSTPGFVLDAFARSSLWKIGLD------Y 398
++ + I G ++ S +IG
Sbjct: 153 NLEP------LLVAAREGTETGIKSLGVDVRVCDIGRDINEVISSYEVEIGGRMWPIRPI 206
Query: 399 RHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEP 439
GH + +H G + + T + + E
Sbjct: 207 SDLHGHSISQ-FRIHGGISIPAVNNRDTTRIKGDSFYAVET 246
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 2.00A {Streptococcus pyogenes}
Length = 132
Score = 35.0 bits (81), Expect = 0.014
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 76 ASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVD 135
+L + + G A++++ L +L G+ A +++ R L D
Sbjct: 9 EQRLGHCLRQMAEKGLEALLVTHLTNSYYLTGFSGTA--------ATVLITAKRRVLITD 60
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG,
protein structure initiative, midwest center for STRU
genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Length = 131
Score = 35.0 bits (81), Expect = 0.015
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 76 ASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVD 135
+L + LV +G A++++ + I +L + G++ A + + +R D
Sbjct: 5 QRRLERFDAKLVQSGLDALLVTGQNNIYYLTDFWGTN--------ATVFITKNRRLFLTD 56
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 34.5 bits (80), Expect = 0.062
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 57/234 (24%)
Query: 235 VKNSAELEGMLNSHLRDAAAL-AQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLD 293
+ EL+ M A ++ V + + G E+D ++ E
Sbjct: 34 QRTPGELDAM-----AAAGSIVGAALVAVRDAAKAGVSTLELD---QVAE---------- 75
Query: 294 TSFDTISGSGANGAIIHYKPEPGK-C-SVVD-------SKKLFL-------LDSGAQYVD 337
I +GA + + Y P C SV D S L +D GA +D
Sbjct: 76 ---SVIREAGAVPSFLGYHGFPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGA-ILD 131
Query: 338 G-TTDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPG-------FVLDAFARS 389
G D T G E + + +++ I PG ++ R+
Sbjct: 132 GWHGDSAWTFAVGTVIP-SDEALSEATRL--SMEAGI-AAMIPGNRLTDVSHAIELGTRA 187
Query: 390 SLWKIGLDY---RHGTGHGVGAALNVHEGPQSISF-RYGNMTPLVEGMIVSNEP 439
+ + + GHG+G ++ H P + G L G +++ EP
Sbjct: 188 AEKQFDRAFGIVDGYGGHGIGRSM--HLDPFLPNEGAPGKGPLLAVGSVLAIEP 239
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.098
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 355 EKECFTRVLQGHIALDQAIFPQSTPGFVLDA 385
EK+ + LQ + L A S P + A
Sbjct: 18 EKQALKK-LQASLKL-YA--DDSAPALAIKA 44
Score = 30.3 bits (67), Expect = 0.79
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 233 KAVKNSAELEGMLNSHLRDAA-ALA 256
+A+K +L+ L + D+A ALA
Sbjct: 20 QALK---KLQASLKLYADDSAPALA 41
Score = 29.1 bits (64), Expect = 1.9
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 7/26 (26%)
Query: 129 RAKLFVDDSKVTPDVMDHLK-NAGVE 153
KL+ DDS P L A +E
Sbjct: 28 SLKLYADDS--AP----ALAIKATME 47
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 32.5 bits (75), Expect = 0.29
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 402 TGHGVGAALNVHEGPQSISF-RYGNMTPLVEGMIVSNEP 439
GHGVG L HE PQ ++ G L +GM ++ EP
Sbjct: 179 VGHGVGREL--HEDPQIPNYGTPGTGVVLRKGMTLAIEP 215
>3sbx_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Length = 189
Score = 30.7 bits (70), Expect = 0.77
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 22 DAAEELKEAIAKKNHELVY 40
+ A + AIA + LV+
Sbjct: 31 ELAGAVGAAIAARGWTLVW 49
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase;
structural genomics target, NYSGXRC, PSI, protein
structure initiative; 2.72A {Bacillus subtilis} SCOP:
c.129.1.1
Length = 191
Score = 30.3 bits (69), Expect = 0.94
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 21 SDAAEELKEAIAKKNHELVY 40
A EL +A++ LVY
Sbjct: 19 KRKAAELGVYMAEQGIGLVY 38
>3qua_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.10A {Mycobacterium smegmatis str}
Length = 199
Score = 30.3 bits (69), Expect = 1.0
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 22 DAAEELKEAIAKKNHELVY 40
+ A E+ +IA + LV
Sbjct: 40 ELAAEVGSSIAARGWTLVS 58
>1ydh_A AT5G11950; structural genomics, protein structure initiative,
center for eukaryotic structural genomics, CESG; 2.15A
{Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Length = 216
Score = 30.4 bits (69), Expect = 1.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 21 SDAAEELKEAIAKKNHELVY 40
SDAA EL + K+ +LVY
Sbjct: 27 SDAAIELGNELVKRKIDLVY 46
>2a33_A Hypothetical protein; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP:
c.129.1.1 PDB: 2q4o_A
Length = 215
Score = 30.4 bits (69), Expect = 1.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 21 SDAAEELKEAIAKKNHELVY 40
DAA +L + +N +LVY
Sbjct: 31 QDAAVDLGNELVSRNIDLVY 50
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 28.9 bits (65), Expect = 5.0
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 10/80 (12%)
Query: 101 EIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVDDSKVTPDVMDHLKNAGVELRPYNSI 160
+A L G +V IV ++ + P++M L VE +
Sbjct: 544 SLAEKLATAGHEV---------TIVSGVHLANYMHFTLEYPNMMRRLHELHVEELG-DHF 593
Query: 161 LSEIKSLAAQGAQLWLDPSS 180
S I+ + +W D S
Sbjct: 594 CSRIEPGRMEIYNIWGDGSK 613
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 27.9 bits (63), Expect = 9.8
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 401 GTGHGVGAALNVHEGPQSISF 421
G G VG L H + +S
Sbjct: 223 GRGKTVGDPLTGHPKVRMVSL 243
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.397
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,345,876
Number of extensions: 516562
Number of successful extensions: 1234
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1163
Number of HSP's successfully gapped: 50
Length of query: 533
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 435
Effective length of database: 3,965,535
Effective search space: 1725007725
Effective search space used: 1725007725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)