RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 009507
(533 letters)
>d1pv9a2 d.127.1.1 (A:125-345) Aminopeptidase P, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 221
Score = 97.7 bits (242), Expect = 7e-24
Identities = 65/226 (28%), Positives = 99/226 (43%), Gaps = 14/226 (6%)
Query: 236 KNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTS 295
K E+E + + A+ EEI G + EV +E+ K +G +
Sbjct: 1 KTKEEIEIIEKACEIADKAVMAAI----EEITEGKREREVA---AKVEYLMKMNGAEKPA 53
Query: 296 FDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTARE 355
FDTI SG A+ H + D L ++D GA Y +DITRT+ G P ++
Sbjct: 54 FDTIIASGHRSALPHGVASDKRIERGD---LVVIDLGALYNHYNSDITRTIVVGSPNEKQ 110
Query: 356 KECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLDYRHGTGHGVGAALNVHEG 415
+E + VL+ +A P LD+ AR + + G G G L +HE
Sbjct: 111 REIYEIVLEAQKRAVEAAKP-GMTAKELDSIAREIIKEYGYGDYFIHSLGHGVGLEIHEW 169
Query: 416 PQSISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 461
P+ + T L EGM+++ EPG Y G+RIE+ + + E G
Sbjct: 170 PR---ISQYDETVLKEGMVITIEPGIYIPKLGGVRIEDTVLITENG 212
>d1chma2 d.127.1.1 (A:157-402) Creatinase, catalytic (C-terminal)
domain {Pseudomonas putida [TaxId: 303]}
Length = 246
Score = 78.6 bits (192), Expect = 5e-17
Identities = 48/258 (18%), Positives = 78/258 (30%), Gaps = 33/258 (12%)
Query: 235 VKNSAELEGMLNSHLRDAAALA-QFWVWLEEEIHNGAKLTEVDVADKLLEF-----RSKQ 288
+K++ E + R A +A + E + + E +VA +
Sbjct: 2 IKSAEEHVMI-----RHGARIADIGGAAVVEALGDQV--PEYEVALHATQAMVRAIADTF 54
Query: 289 SGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF 348
T SG N H K + D + L+ T + RT+
Sbjct: 55 EDVELMDTWTWFQSGINTDGAHNPVTTRKVNKGD---ILSLNCFPMIAGYYTALERTLFL 111
Query: 349 GEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSL-WKIGLDYRHGTGHGVG 407
+ + ++ H A + I P + + L + G GH G
Sbjct: 112 DHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDIARELNEIFLKHDVLQYRTFGYGHSFG 171
Query: 408 AALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDH----AFGIRIENLLYVKEVGTP 463
+ + + R T L GM+VS EP A G R ++L V E
Sbjct: 172 TLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIMLPEGLPGAGGYREHDILIVNEN--- 228
Query: 464 NRFGGVSYLGFEKLTFVP 481
G E +T P
Sbjct: 229 ---------GAENITKFP 237
>d1o0xa_ d.127.1.1 (A:) Methionine aminopeptidase {Thermotoga
maritima [TaxId: 2336]}
Length = 249
Score = 77.0 bits (188), Expect = 2e-16
Identities = 51/248 (20%), Positives = 77/248 (31%), Gaps = 30/248 (12%)
Query: 235 VKNSAELEGMLNSHLRDAAALA-QFWVWLEEEIHNGAKLTEVD--VADKLLEFRSKQSGF 291
+K +E+E M + A + + I G +V+ V + + R K +
Sbjct: 4 IKTPSEIEKM-----KKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFK 58
Query: 292 LDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEP 351
+ + N ++H P K D GA Y D T GE
Sbjct: 59 GYGGYKYATCVSVNEEVVHGLPLKEKVFKEGDIVSV--DVGAVYQGLYGDAAVTYIVGET 116
Query: 352 TAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLDYRHGTGHGVGAALN 411
R KE + + I P G V + R GHGVG
Sbjct: 117 DERGKELVRVTREVLEKAIKMIKPGIRLGDVSHCIQETVESVGFNVIRDYVGHGVG--RE 174
Query: 412 VHEGPQ-SISFRYGNMTPLVEGMIVSNEPGYYE-----------------DHAFGIRIEN 453
+HE PQ G L +GM ++ EP E D + E+
Sbjct: 175 LHEDPQIPNYGTPGTGVVLRKGMTLAIEPMVSEGDWRVVVKEDGWTAVTVDGSRCAHFEH 234
Query: 454 LLYVKEVG 461
+ + E G
Sbjct: 235 TILITENG 242
>d2gg2a1 d.127.1.1 (A:3-264) Methionine aminopeptidase {Escherichia
coli [TaxId: 562]}
Length = 262
Score = 75.3 bits (184), Expect = 7e-16
Identities = 35/251 (13%), Positives = 72/251 (28%), Gaps = 35/251 (13%)
Query: 235 VKNSAELEGMLNSHLRDAAALA-QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSG--- 290
+K ++E M R A LA + +E + G + ++ ++ +
Sbjct: 3 IKTPEDIEKM-----RVAGRLAAEVLEMIEPYVKPGV--STGELDRICNDYIVNEQHAVS 55
Query: 291 --FLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF 348
+ N + H P ++ + +D D ++
Sbjct: 56 ACLGYHGYPKSVCISINEVVCHG--IPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIV 113
Query: 349 GEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLDY-RHGTGHGVG 407
G+PT + + + + P + A + + G R GHG+G
Sbjct: 114 GKPTIMGERLCRITQESLYLALRMVKPGINLREIGAA-IQKFVEAEGFSVVREYCGHGIG 172
Query: 408 AALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY-----------------EDHAFGIR 450
+ E L GM + EP +D + +
Sbjct: 173 RGFH-EEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMKDGWTVKTKDRSLSAQ 231
Query: 451 IENLLYVKEVG 461
E+ + V + G
Sbjct: 232 YEHTIVVTDNG 242
>d2v3za2 d.127.1.1 (A:177-440) Aminopeptidase P, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 264
Score = 67.8 bits (164), Expect = 3e-13
Identities = 54/249 (21%), Positives = 91/249 (36%), Gaps = 38/249 (15%)
Query: 239 AELEGMLNSHLRDAAALA-QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFD 297
E+ + R A + E+ G + E + + + + G S++
Sbjct: 3 EEIAVL-----RRAGEITAMAHTRAMEKCRPG--MFEYHL-EGEIHHEFNRHGARYPSYN 54
Query: 298 TISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTAREK 356
TI GSG NG I+HY + D L L+D+G +Y DITRT G+ T ++
Sbjct: 55 TIVGSGENGCILHYTENECEMRDGD---LVLIDAGCEYKGYAGDITRTFPVNGKFTQAQR 111
Query: 357 ECFTRVLQGHIALDQAIFPQSTPGFV----LDAFARSSLWKIGLDY-----------RHG 401
E + VL+ + P ++ V + + L R
Sbjct: 112 EIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAHRPF 171
Query: 402 TGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDHAFGIRIE 452
HG+ L + + + L GM+++ PG Y + GIRIE
Sbjct: 172 FMHGLSHWLGLDVHDVGV-YGQDRSRILEPGMVLTVAPGLYIAPDAEVPEQYRGIGIRIE 230
Query: 453 NLLYVKEVG 461
+ + + E G
Sbjct: 231 DDIVITETG 239
>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 218
Score = 60.9 bits (146), Expect = 3e-11
Identities = 35/225 (15%), Positives = 69/225 (30%), Gaps = 17/225 (7%)
Query: 240 ELEGMLNSHLRDAAALA-QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDT 298
+ E + A +A + + G +++A+ + + + G
Sbjct: 2 DTEKL-----MKAGEIAKKVREKAIKLARPGM--LLLELAESIEKMIMELGGK----PAF 50
Query: 299 ISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKEC 358
N HY P G +V+ +D G D TV G E
Sbjct: 51 PVNLSINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDELMEA 110
Query: 359 FTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLDYRHGTGHGVGAALNVHEGPQS 418
L I++ +A G ++ R +K + +GH +
Sbjct: 111 AKEALNAAISVARAGVEIKELGKAIENEIRKRGFKP---IVNLSGHKIERYKLHAGISIP 167
Query: 419 ISFRYGNMTPLVEGMIVSNEPGYY--EDHAFGIRIENLLYVKEVG 461
+R + L EG + + EP + + E+ + V++
Sbjct: 168 NIYRPHDNYVLKEGDVFAIEPFATIGARNGIVAQFEHTIIVEKDS 212
>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 295
Score = 58.0 bits (139), Expect = 6e-10
Identities = 38/243 (15%), Positives = 68/243 (27%), Gaps = 24/243 (9%)
Query: 235 VKNSAELEGMLNSHLRDAAALA-QFWVWLEEEIHNGAKLTEVD--VADKLLEFRSKQSGF 291
+ R+AA Q ++ I G + E+ + D + +
Sbjct: 51 QASEEIWNDF-----REAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLN 105
Query: 292 LDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEP 351
+F T A HY P G +V+ + +D G D TV F
Sbjct: 106 AGLAFPTGCSLNNCAA--HYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFTVTFNPK 163
Query: 352 TAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGL------DYRHGTGHG 405
+ I G + S +I R+ GH
Sbjct: 164 YDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGHS 223
Query: 406 VGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY-------EDHAFGIRIENLLYVK 458
+G H G + G T + EG + + E ++ + E+ + ++
Sbjct: 224 IGQYRI-HAGKTVPIVKGGEATRMEEGEVYAIETFGSTGKGVVDIKGSYTAQFEHTILLR 282
Query: 459 EVG 461
Sbjct: 283 PTC 285
>d1qxya_ d.127.1.1 (A:) Methionine aminopeptidase {Staphylococcus
aureus [TaxId: 1280]}
Length = 249
Score = 54.4 bits (129), Expect = 7e-09
Identities = 40/247 (16%), Positives = 77/247 (31%), Gaps = 27/247 (10%)
Query: 235 VKNSAELEGMLNSHLRDAAALA-QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLD 293
VK EL+ + ++ + + ++ G +T ++ + E +
Sbjct: 3 VKTEEELQAL-----KEIGYICAKVRNTMQAATKPG--ITTKELDNIAKELFEEYGAISA 55
Query: 294 TSFDTISGSGANGAIIHYKPEPGKCS-VVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPT 352
D ++ V+ L +D A D + GE
Sbjct: 56 PIHDENFPGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESD 115
Query: 353 AREKECFTRVLQGHIALD-QAIFPQSTPGFVLDAFARSSLWKIGLDYRHGTGHGVGAALN 411
K+ V + P + + A ++ ++ TGHGVG +L+
Sbjct: 116 DPMKQKVCDVATMAFENAIAKVKPGTKLSNIGKAVHNTARQNDLKVIKNLTGHGVGLSLH 175
Query: 412 VHEGPQSISFRYGNMTPLVEGMIVSNEPGYY-----------------EDHAFGIRIENL 454
F + T L EGM+++ EP D +F +IE+
Sbjct: 176 EAPAHVLNYFDPKDKTLLTEGMVLAIEPFISSNASFVTEGKNEWAFETSDKSFVAQIEHT 235
Query: 455 LYVKEVG 461
+ V + G
Sbjct: 236 VIVTKDG 242
>d1vqox1 d.29.1.1 (X:7-88) Ribosomal protein L31e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 82
Score = 26.2 bits (58), Expect = 2.8
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 23 AAEELKEAIAK---KNHELVYLYDLNLVDVIWKESRPKPPNKPIRVHALK 69
A ++E +AK + + V L D ++ + W R P+K IRV A +
Sbjct: 23 AMILIREHLAKHFSVDEDAVRL-DPSINEAAWARGRANTPSK-IRVRAAR 70
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 128
Score = 26.1 bits (57), Expect = 5.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 26 ELKEAIAKKNHELVYLYDLNLVDVIWK 52
E+++ ++K HELV D+N V+ +
Sbjct: 15 EIQKVFSEKGHELVLKVDVNGVEELDS 41
>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida
[TaxId: 303]}
Length = 554
Score = 26.7 bits (59), Expect = 8.1
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Query: 192 AIEKYLTSNNNKKSKTKMHTDTT--GQSGGPAGVFRTSPIA 230
I + LT ++ D T QSG P GVF+T A
Sbjct: 64 KIVETLT---------RLEDDETLLVQSGKPVGVFKTHSNA 95
>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia
coli [TaxId: 562]}
Length = 242
Score = 26.5 bits (58), Expect = 8.2
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 99 LDEIAWLLNLRGSDVPHSPVMYAYLIVE 126
+D IA L N RG+ P PV A++ +
Sbjct: 9 IDHIATLRNARGTAYP-DPVQAAFIAEQ 35
>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 545
Score = 26.7 bits (59), Expect = 8.3
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 203 KKSKTKMHTDTT--GQSGGPAGVFRTSPIA 230
+ ++ D T QSG P VFRT P A
Sbjct: 58 VDTLLRLENDETLLIQSGKPVAVFRTHPDA 87
>d1iwea_ c.37.1.10 (A:) Adenylosuccinate synthetase, PurA {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 430
Score = 26.2 bits (57), Expect = 10.0
Identities = 15/134 (11%), Positives = 41/134 (30%), Gaps = 8/134 (5%)
Query: 139 VTPDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLDP--SSVNAAIMNTYEIAIEKY 196
+ + + N GV + + E + +G + W S A ++ + A++
Sbjct: 63 INTKAVSFIGN-GVVIHL-PGLFEEAEKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDGL 120
Query: 197 LTSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAF--SKAVKNSAELEGMLNSHLRDAAA 254
++++ + TT + GP + + + + E + +
Sbjct: 121 --QEVQRQAQEGKNIGTTKKGIGPTYSSKAARTGLRICDLLSDFDEFSARFKNLAHQHQS 178
Query: 255 LAQFWVWLEEEIHN 268
+ E
Sbjct: 179 MFPTLEIDVEGQLK 192
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.397
Gapped
Lambda K H
0.267 0.0411 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,994,893
Number of extensions: 93148
Number of successful extensions: 248
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 19
Length of query: 533
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 443
Effective length of database: 1,171,896
Effective search space: 519149928
Effective search space used: 519149928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)