Query 009508
Match_columns 533
No_of_seqs 185 out of 2004
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 13:58:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 100.0 5.9E-44 1.3E-48 366.9 43.0 439 47-491 75-554 (569)
2 TIGR02732 zeta_caro_desat caro 100.0 4.4E-42 9.6E-47 351.7 39.2 433 49-487 1-474 (474)
3 PLN02612 phytoene desaturase 100.0 2.6E-41 5.7E-46 352.4 42.7 438 43-492 89-550 (567)
4 TIGR02731 phytoene_desat phyto 100.0 1.2E-38 2.6E-43 328.0 40.6 426 49-487 1-453 (453)
5 PRK07233 hypothetical protein; 100.0 1.5E-36 3.2E-41 312.1 38.1 416 49-491 1-432 (434)
6 TIGR03467 HpnE squalene-associ 100.0 1.4E-33 3.1E-38 288.7 38.7 404 61-488 1-419 (419)
7 PRK07208 hypothetical protein; 100.0 1.6E-32 3.5E-37 284.8 36.6 426 46-504 3-472 (479)
8 COG1232 HemY Protoporphyrinoge 100.0 5.6E-33 1.2E-37 273.7 30.7 405 48-488 1-444 (444)
9 PRK11883 protoporphyrinogen ox 100.0 1.2E-32 2.6E-37 284.4 34.4 411 48-488 1-450 (451)
10 PRK12416 protoporphyrinogen ox 100.0 1.9E-32 4.2E-37 282.8 34.7 413 48-491 2-462 (463)
11 COG3349 Uncharacterized conser 100.0 8.5E-34 1.8E-38 277.4 22.9 440 48-495 1-468 (485)
12 TIGR00562 proto_IX_ox protopor 100.0 1.6E-32 3.5E-37 283.9 33.6 407 47-491 2-461 (462)
13 PLN02576 protoporphyrinogen ox 100.0 1.3E-31 2.8E-36 279.2 36.6 414 45-492 10-489 (496)
14 PLN02268 probable polyamine ox 100.0 1.5E-31 3.3E-36 274.0 29.1 398 48-490 1-434 (435)
15 PLN02529 lysine-specific histo 100.0 8.9E-31 1.9E-35 274.5 33.7 438 2-492 101-600 (738)
16 PLN02328 lysine-specific histo 100.0 1.5E-29 3.3E-34 266.2 30.3 445 1-492 175-681 (808)
17 TIGR02733 desat_CrtD C-3',4' d 100.0 7.6E-29 1.7E-33 257.6 31.6 422 48-489 2-491 (492)
18 PLN02676 polyamine oxidase 100.0 1.4E-28 3.1E-33 252.2 28.6 411 45-492 24-475 (487)
19 PLN03000 amine oxidase 100.0 5E-29 1.1E-33 261.7 25.7 444 2-492 125-625 (881)
20 KOG0029 Amine oxidase [Seconda 100.0 2.7E-28 5.9E-33 246.7 26.3 416 43-492 11-461 (501)
21 PLN02568 polyamine oxidase 100.0 6E-28 1.3E-32 249.0 28.0 424 46-491 4-536 (539)
22 TIGR02734 crtI_fam phytoene de 100.0 2.4E-27 5.2E-32 247.2 32.6 421 50-494 1-496 (502)
23 COG1231 Monoamine oxidase [Ami 100.0 5.2E-27 1.1E-31 225.3 27.0 407 45-491 5-448 (450)
24 TIGR02730 carot_isom carotene 100.0 4.5E-26 9.8E-31 236.4 32.2 426 48-491 1-493 (493)
25 KOG0685 Flavin-containing amin 100.0 4.4E-26 9.5E-31 218.4 26.7 403 45-492 19-493 (498)
26 PLN02976 amine oxidase 99.9 1.6E-25 3.5E-30 240.9 31.8 234 245-496 931-1192(1713)
27 PF01593 Amino_oxidase: Flavin 99.9 8.4E-26 1.8E-30 232.8 15.4 224 255-487 213-450 (450)
28 KOG1276 Protoporphyrinogen oxi 99.9 1.9E-23 4.1E-28 196.9 27.4 414 45-487 9-490 (491)
29 COG1233 Phytoene dehydrogenase 99.9 3.2E-23 7E-28 213.2 26.1 418 46-491 2-484 (487)
30 PRK13977 myosin-cross-reactive 99.9 2.1E-21 4.5E-26 196.2 30.6 425 44-491 19-525 (576)
31 COG3380 Predicted NAD/FAD-depe 99.9 2.7E-22 5.9E-27 178.0 13.7 210 265-490 117-331 (331)
32 COG2907 Predicted NAD/FAD-bind 99.9 1.1E-20 2.4E-25 173.4 21.3 272 44-339 5-300 (447)
33 KOG4254 Phytoene desaturase [C 99.9 2.5E-19 5.3E-24 170.0 27.6 246 243-500 257-556 (561)
34 PTZ00363 rab-GDP dissociation 99.8 1.6E-17 3.6E-22 166.9 24.5 248 46-307 3-288 (443)
35 COG2081 Predicted flavoprotein 99.7 2.5E-15 5.4E-20 142.8 17.2 56 250-308 110-166 (408)
36 PF06100 Strep_67kDa_ant: Stre 99.7 4.8E-14 1E-18 138.5 26.1 416 47-483 2-499 (500)
37 PRK00711 D-amino acid dehydrog 99.7 5E-14 1.1E-18 143.9 26.2 200 251-488 201-401 (416)
38 PF01266 DAO: FAD dependent ox 99.6 3.5E-14 7.6E-19 142.0 22.5 63 251-316 147-209 (358)
39 TIGR01373 soxB sarcosine oxida 99.6 1.1E-12 2.4E-17 133.5 26.7 199 252-488 184-384 (407)
40 TIGR00031 UDP-GALP_mutase UDP- 99.6 4.6E-13 1E-17 131.7 21.9 232 47-311 1-249 (377)
41 TIGR03329 Phn_aa_oxid putative 99.6 3.3E-13 7.1E-18 139.0 20.6 56 251-310 183-238 (460)
42 PRK12409 D-amino acid dehydrog 99.5 2.9E-12 6.3E-17 130.5 26.8 59 251-311 197-260 (410)
43 PF00996 GDI: GDP dissociation 99.5 2.5E-12 5.5E-17 127.7 22.8 245 46-304 3-284 (438)
44 PRK10157 putative oxidoreducta 99.5 1.1E-11 2.4E-16 126.3 26.6 55 253-309 110-164 (428)
45 TIGR01377 soxA_mon sarcosine o 99.5 4.5E-11 9.9E-16 120.6 30.6 56 252-310 146-201 (380)
46 PRK10015 oxidoreductase; Provi 99.5 1.6E-11 3.4E-16 125.0 26.8 55 253-309 110-164 (429)
47 KOG2820 FAD-dependent oxidored 99.5 1.5E-12 3.3E-17 120.0 17.3 64 252-316 154-218 (399)
48 TIGR02032 GG-red-SF geranylger 99.5 1.4E-11 3.1E-16 119.7 24.7 57 252-309 92-148 (295)
49 COG0644 FixC Dehydrogenases (f 99.5 4.6E-11 9.9E-16 120.7 28.8 59 252-311 96-154 (396)
50 PRK11259 solA N-methyltryptoph 99.5 9.5E-11 2.1E-15 118.1 30.6 200 251-489 149-360 (376)
51 COG0665 DadA Glycine/D-amino a 99.4 1.2E-10 2.7E-15 117.8 29.0 206 251-491 156-369 (387)
52 PF03486 HI0933_like: HI0933-l 99.4 5.1E-13 1.1E-17 133.2 11.1 58 250-309 108-166 (409)
53 PRK01747 mnmC bifunctional tRN 99.4 1.2E-10 2.5E-15 125.5 28.1 56 251-310 408-464 (662)
54 PRK08773 2-octaprenyl-3-methyl 99.4 3.6E-10 7.7E-15 114.5 29.2 65 45-110 4-69 (392)
55 PRK11101 glpA sn-glycerol-3-ph 99.4 2.7E-10 5.9E-15 119.4 28.4 59 251-311 149-213 (546)
56 PF13450 NAD_binding_8: NAD(P) 99.3 1.1E-12 2.4E-17 95.6 5.0 56 52-107 1-68 (68)
57 PLN02464 glycerol-3-phosphate 99.3 2.4E-10 5.2E-15 121.2 24.2 61 251-311 232-298 (627)
58 COG4716 Myosin-crossreactive a 99.3 1.7E-10 3.7E-15 107.8 19.2 424 45-491 20-525 (587)
59 COG0578 GlpA Glycerol-3-phosph 99.3 5.1E-10 1.1E-14 112.8 24.0 57 252-311 165-227 (532)
60 KOG2852 Possible oxidoreductas 99.3 2.6E-11 5.6E-16 109.4 13.1 206 252-492 148-366 (380)
61 TIGR03364 HpnW_proposed FAD de 99.3 1.2E-09 2.6E-14 109.6 26.9 57 251-315 145-202 (365)
62 PRK07364 2-octaprenyl-6-methox 99.3 3.4E-09 7.4E-14 108.3 29.3 63 45-110 16-78 (415)
63 PRK13369 glycerol-3-phosphate 99.3 9.7E-10 2.1E-14 114.4 25.0 41 45-85 4-44 (502)
64 COG0654 UbiH 2-polyprenyl-6-me 99.3 8.9E-10 1.9E-14 111.1 23.8 59 47-110 2-62 (387)
65 COG0579 Predicted dehydrogenas 99.3 8.2E-10 1.8E-14 109.2 22.7 59 252-311 154-213 (429)
66 PRK12266 glpD glycerol-3-phosp 99.3 2.2E-09 4.8E-14 111.7 27.3 40 46-85 5-44 (508)
67 PRK06185 hypothetical protein; 99.3 8.1E-10 1.8E-14 112.6 23.0 61 45-110 4-64 (407)
68 PRK08244 hypothetical protein; 99.3 2.8E-09 6E-14 111.2 27.3 59 47-110 2-60 (493)
69 PRK06847 hypothetical protein; 99.3 1.4E-09 3E-14 109.6 23.9 58 252-311 108-165 (375)
70 PRK04176 ribulose-1,5-biphosph 99.3 1.2E-10 2.6E-15 109.4 14.5 40 45-84 23-62 (257)
71 PRK07045 putative monooxygenas 99.3 9.5E-09 2.1E-13 103.9 29.4 61 45-110 3-63 (388)
72 COG0562 Glf UDP-galactopyranos 99.2 1.3E-11 2.7E-16 113.5 7.3 226 47-312 1-244 (374)
73 PRK06184 hypothetical protein; 99.2 6.2E-09 1.3E-13 108.8 28.1 60 46-110 2-61 (502)
74 PRK07190 hypothetical protein; 99.2 4E-09 8.8E-14 108.9 26.3 55 255-311 113-167 (487)
75 PRK06834 hypothetical protein; 99.2 1.4E-09 3.1E-14 112.4 22.8 57 252-311 101-158 (488)
76 TIGR01988 Ubi-OHases Ubiquinon 99.2 1.9E-09 4.1E-14 109.0 21.9 56 252-310 107-164 (385)
77 PRK05714 2-octaprenyl-3-methyl 99.2 5.6E-09 1.2E-13 106.2 25.0 57 252-311 113-170 (405)
78 PRK06183 mhpA 3-(3-hydroxyphen 99.2 8.1E-09 1.8E-13 108.8 26.8 61 45-110 8-68 (538)
79 PRK08013 oxidoreductase; Provi 99.2 1.5E-08 3.3E-13 102.8 27.8 63 46-110 2-67 (400)
80 TIGR00292 thiazole biosynthesi 99.2 6.9E-10 1.5E-14 104.0 16.4 40 45-84 19-58 (254)
81 PF01494 FAD_binding_3: FAD bi 99.2 1.2E-09 2.5E-14 109.2 18.9 58 48-110 2-59 (356)
82 PLN00093 geranylgeranyl diphos 99.2 6.1E-08 1.3E-12 99.0 31.4 38 43-80 35-72 (450)
83 PRK11728 hydroxyglutarate oxid 99.2 5E-10 1.1E-14 113.3 16.2 57 251-310 149-205 (393)
84 PRK08132 FAD-dependent oxidore 99.2 2.3E-08 5E-13 105.6 29.2 64 42-110 18-81 (547)
85 PLN02697 lycopene epsilon cycl 99.2 1.1E-08 2.4E-13 105.5 25.8 57 252-310 193-249 (529)
86 COG1635 THI4 Ribulose 1,5-bisp 99.2 5.4E-10 1.2E-14 97.4 13.5 39 46-84 29-67 (262)
87 PTZ00383 malate:quinone oxidor 99.2 1E-09 2.2E-14 112.5 17.8 59 251-311 211-275 (497)
88 PRK07494 2-octaprenyl-6-methox 99.2 5.1E-09 1.1E-13 106.0 22.7 60 45-110 5-64 (388)
89 PRK07333 2-octaprenyl-6-methox 99.2 2.5E-09 5.5E-14 108.8 20.6 57 252-310 112-168 (403)
90 TIGR01984 UbiH 2-polyprenyl-6- 99.2 1.1E-08 2.4E-13 103.3 25.1 57 252-310 106-163 (382)
91 PRK07588 hypothetical protein; 99.2 8.2E-09 1.8E-13 104.5 24.0 58 48-110 1-58 (391)
92 PRK09126 hypothetical protein; 99.2 7E-09 1.5E-13 105.2 23.5 63 46-110 2-66 (392)
93 PLN02463 lycopene beta cyclase 99.2 3E-08 6.5E-13 100.7 27.8 39 43-81 24-62 (447)
94 PF01946 Thi4: Thi4 family; PD 99.2 5.6E-10 1.2E-14 98.1 12.9 40 46-85 16-55 (230)
95 PRK08243 4-hydroxybenzoate 3-m 99.2 3E-08 6.4E-13 100.4 27.6 59 47-110 2-62 (392)
96 PRK06126 hypothetical protein; 99.2 6E-09 1.3E-13 110.1 23.0 62 44-110 4-65 (545)
97 PRK06481 fumarate reductase fl 99.1 2.8E-09 6E-14 111.0 20.0 57 251-309 190-251 (506)
98 PRK08020 ubiF 2-octaprenyl-3-m 99.1 2.5E-08 5.5E-13 101.0 26.4 65 45-110 3-69 (391)
99 PRK11445 putative oxidoreducta 99.1 6.8E-08 1.5E-12 96.1 28.5 59 47-110 1-62 (351)
100 PRK08850 2-octaprenyl-6-methox 99.1 3.6E-08 7.8E-13 100.3 27.1 61 47-110 4-67 (405)
101 PRK07608 ubiquinone biosynthes 99.1 2E-08 4.4E-13 101.7 25.1 64 46-110 4-68 (388)
102 PRK05732 2-octaprenyl-6-methox 99.1 4.1E-08 9E-13 99.6 26.7 35 46-80 2-39 (395)
103 PRK05192 tRNA uridine 5-carbox 99.1 1.5E-08 3.2E-13 104.7 22.2 39 46-84 3-42 (618)
104 PRK08849 2-octaprenyl-3-methyl 99.1 2.2E-08 4.7E-13 101.1 23.0 63 47-110 3-67 (384)
105 TIGR02023 BchP-ChlP geranylger 99.1 7.1E-08 1.5E-12 97.4 26.3 32 48-79 1-32 (388)
106 PRK08274 tricarballylate dehyd 99.1 1.3E-09 2.8E-14 113.0 13.7 58 250-309 130-192 (466)
107 PLN02985 squalene monooxygenas 99.1 1.3E-07 2.8E-12 98.2 28.4 65 42-111 38-102 (514)
108 PRK07121 hypothetical protein; 99.1 7E-09 1.5E-13 108.0 18.9 60 250-310 176-240 (492)
109 PRK07538 hypothetical protein; 99.1 1E-07 2.2E-12 97.3 27.0 58 48-110 1-58 (413)
110 TIGR01790 carotene-cycl lycope 99.1 9.7E-08 2.1E-12 96.6 26.8 36 49-84 1-36 (388)
111 PRK07236 hypothetical protein; 99.1 3.2E-08 6.9E-13 100.0 23.2 64 44-111 3-66 (386)
112 PF00890 FAD_binding_2: FAD bi 99.1 3E-09 6.5E-14 108.7 15.4 59 250-310 140-204 (417)
113 PRK06617 2-octaprenyl-6-methox 99.0 1.3E-07 2.8E-12 95.1 25.7 58 252-312 105-163 (374)
114 PRK08294 phenol 2-monooxygenas 99.0 4.3E-07 9.4E-12 96.8 30.9 60 46-110 31-91 (634)
115 TIGR01813 flavo_cyto_c flavocy 99.0 7E-09 1.5E-13 106.6 16.9 59 251-310 130-193 (439)
116 TIGR00275 flavoprotein, HI0933 99.0 3.2E-09 6.9E-14 107.2 14.0 57 250-309 104-160 (400)
117 TIGR02028 ChlP geranylgeranyl 99.0 3.5E-07 7.5E-12 92.5 28.2 35 48-82 1-35 (398)
118 PF05834 Lycopene_cycl: Lycope 99.0 6.2E-08 1.3E-12 97.1 22.2 55 252-309 88-142 (374)
119 TIGR02360 pbenz_hydroxyl 4-hyd 99.0 3.5E-07 7.5E-12 92.4 27.4 61 47-110 2-62 (390)
120 PRK12845 3-ketosteroid-delta-1 99.0 3.2E-08 6.8E-13 103.9 20.2 59 251-311 217-280 (564)
121 TIGR00136 gidA glucose-inhibit 99.0 4.1E-08 8.8E-13 101.2 20.5 57 252-310 97-155 (617)
122 PRK06753 hypothetical protein; 99.0 1.3E-07 2.8E-12 95.2 24.0 58 48-110 1-58 (373)
123 PRK06175 L-aspartate oxidase; 99.0 4.9E-09 1.1E-13 106.8 13.8 58 250-309 127-189 (433)
124 KOG1439 RAB proteins geranylge 99.0 4.9E-09 1.1E-13 99.5 12.4 244 47-304 4-284 (440)
125 PRK05257 malate:quinone oxidor 99.0 1E-08 2.2E-13 105.6 15.7 60 251-311 183-248 (494)
126 TIGR03378 glycerol3P_GlpB glyc 99.0 7.7E-09 1.7E-13 102.3 13.8 69 246-316 258-329 (419)
127 PRK08163 salicylate hydroxylas 99.0 4.4E-09 9.5E-14 106.8 12.2 60 46-110 3-62 (396)
128 KOG2844 Dimethylglycine dehydr 99.0 1.3E-07 2.9E-12 95.2 22.1 57 251-309 187-243 (856)
129 PLN02927 antheraxanthin epoxid 99.0 7.3E-08 1.6E-12 101.3 21.3 36 45-80 79-114 (668)
130 PRK07843 3-ketosteroid-delta-1 99.0 4.9E-08 1.1E-12 102.8 19.9 59 250-310 207-270 (557)
131 PRK06996 hypothetical protein; 99.0 5.2E-07 1.1E-11 91.5 26.8 65 43-110 7-75 (398)
132 PRK05868 hypothetical protein; 99.0 1.1E-06 2.3E-11 88.3 28.4 59 47-110 1-59 (372)
133 PRK12835 3-ketosteroid-delta-1 98.9 3.6E-08 7.7E-13 104.1 18.4 59 251-310 213-276 (584)
134 PRK12834 putative FAD-binding 98.9 2.1E-08 4.6E-13 105.6 16.6 40 46-85 3-44 (549)
135 PLN02172 flavin-containing mon 98.9 1.3E-08 2.8E-13 104.0 14.5 41 45-85 8-48 (461)
136 PRK13339 malate:quinone oxidor 98.9 1.3E-08 2.8E-13 104.1 14.2 61 251-311 184-249 (497)
137 TIGR01320 mal_quin_oxido malat 98.9 1.6E-08 3.4E-13 104.1 14.5 60 251-311 178-242 (483)
138 PRK05249 soluble pyridine nucl 98.9 4.5E-08 9.7E-13 101.3 17.2 42 44-85 2-43 (461)
139 PLN02661 Putative thiazole syn 98.9 4E-08 8.7E-13 94.6 15.2 41 44-84 89-130 (357)
140 PRK08401 L-aspartate oxidase; 98.9 1E-07 2.2E-12 98.4 19.3 58 250-310 119-176 (466)
141 PF13738 Pyr_redox_3: Pyridine 98.9 9.4E-09 2E-13 93.9 10.3 34 51-84 1-35 (203)
142 PRK12842 putative succinate de 98.9 8.7E-08 1.9E-12 101.4 18.9 57 251-309 214-275 (574)
143 PRK06370 mercuric reductase; V 98.9 4.1E-08 8.9E-13 101.6 16.1 59 251-310 212-272 (463)
144 PRK06475 salicylate hydroxylas 98.9 2.1E-07 4.5E-12 94.5 21.0 58 48-110 3-60 (400)
145 PRK06134 putative FAD-binding 98.9 1.4E-07 3E-12 99.9 20.2 58 251-310 217-279 (581)
146 TIGR01989 COQ6 Ubiquinone bios 98.9 5.4E-07 1.2E-11 92.5 24.1 61 252-312 118-186 (437)
147 PRK12844 3-ketosteroid-delta-1 98.9 1.2E-07 2.7E-12 99.7 19.3 59 250-310 207-270 (557)
148 COG3075 GlpB Anaerobic glycero 98.9 1.3E-08 2.8E-13 94.1 10.2 64 252-317 259-325 (421)
149 PRK12839 hypothetical protein; 98.9 4.2E-08 9.2E-13 103.2 15.5 60 250-310 213-277 (572)
150 PRK07804 L-aspartate oxidase; 98.9 7.1E-08 1.5E-12 101.2 16.9 59 250-309 143-210 (541)
151 COG1252 Ndh NADH dehydrogenase 98.9 2.5E-08 5.4E-13 98.0 12.4 60 247-311 205-264 (405)
152 KOG2614 Kynurenine 3-monooxyge 98.9 2.1E-07 4.5E-12 89.6 18.1 36 47-82 2-37 (420)
153 PRK07395 L-aspartate oxidase; 98.9 1.9E-08 4.1E-13 105.4 12.2 59 250-308 133-196 (553)
154 PRK07573 sdhA succinate dehydr 98.8 4.2E-08 9.1E-13 104.5 14.9 54 255-310 174-233 (640)
155 PRK06116 glutathione reductase 98.8 3.7E-08 8.1E-13 101.5 14.0 61 250-311 207-267 (450)
156 PF12831 FAD_oxidored: FAD dep 98.8 3.8E-09 8.3E-14 107.6 6.5 58 257-316 96-157 (428)
157 PRK09078 sdhA succinate dehydr 98.8 1.6E-07 3.5E-12 99.5 18.9 60 250-310 148-213 (598)
158 PRK12831 putative oxidoreducta 98.8 1E-07 2.3E-12 98.0 17.0 48 43-90 136-183 (464)
159 PLN00128 Succinate dehydrogena 98.8 1.5E-07 3.3E-12 100.0 18.7 60 250-310 186-251 (635)
160 PRK05329 anaerobic glycerol-3- 98.8 5.2E-08 1.1E-12 97.8 14.3 60 252-313 260-322 (422)
161 PLN02815 L-aspartate oxidase 98.8 1.8E-07 3.9E-12 98.5 18.9 60 250-309 154-222 (594)
162 TIGR01812 sdhA_frdA_Gneg succi 98.8 1.4E-07 3E-12 100.1 17.8 58 250-309 128-191 (566)
163 TIGR00551 nadB L-aspartate oxi 98.8 1.5E-07 3.3E-12 97.7 17.8 59 250-310 127-190 (488)
164 PRK05945 sdhA succinate dehydr 98.8 1.6E-07 3.5E-12 99.4 18.2 58 250-309 134-197 (575)
165 PRK08958 sdhA succinate dehydr 98.8 1.1E-07 2.5E-12 100.4 16.7 60 250-310 142-207 (588)
166 PRK07251 pyridine nucleotide-d 98.8 9.5E-08 2.1E-12 98.2 15.7 57 251-310 198-254 (438)
167 KOG2415 Electron transfer flav 98.8 4.1E-07 9E-12 86.8 18.2 64 252-316 184-265 (621)
168 PRK07057 sdhA succinate dehydr 98.8 6.6E-08 1.4E-12 102.4 14.5 59 250-309 147-211 (591)
169 PRK06452 sdhA succinate dehydr 98.8 2.4E-07 5.3E-12 97.7 18.7 58 250-309 135-198 (566)
170 PRK12779 putative bifunctional 98.8 6.9E-08 1.5E-12 106.6 14.9 66 45-110 304-372 (944)
171 TIGR01421 gluta_reduc_1 glutat 98.8 1.2E-07 2.5E-12 97.5 15.7 61 250-312 206-268 (450)
172 PRK12843 putative FAD-binding 98.8 1.7E-07 3.6E-12 99.2 17.2 59 250-310 220-283 (578)
173 PTZ00367 squalene epoxidase; P 98.8 2E-06 4.4E-11 89.9 24.5 62 45-111 31-93 (567)
174 TIGR01424 gluta_reduc_2 glutat 98.8 1.5E-07 3.2E-12 96.8 15.8 38 47-85 2-39 (446)
175 PTZ00139 Succinate dehydrogena 98.8 1.1E-07 2.3E-12 101.1 14.9 59 250-309 165-229 (617)
176 PRK06263 sdhA succinate dehydr 98.8 3.3E-07 7.3E-12 96.4 18.3 59 250-309 133-197 (543)
177 PRK08626 fumarate reductase fl 98.8 9.2E-08 2E-12 102.2 14.2 58 250-309 157-220 (657)
178 PF00732 GMC_oxred_N: GMC oxid 98.8 1.3E-07 2.9E-12 91.8 14.1 65 255-319 196-268 (296)
179 PRK12837 3-ketosteroid-delta-1 98.8 3.1E-07 6.8E-12 95.9 17.7 40 45-85 5-44 (513)
180 COG2509 Uncharacterized FAD-de 98.8 1.3E-05 2.8E-10 78.2 27.1 60 252-314 174-234 (486)
181 TIGR01316 gltA glutamate synth 98.8 6.8E-08 1.5E-12 99.1 12.5 47 43-89 129-175 (449)
182 PRK07803 sdhA succinate dehydr 98.8 6.7E-08 1.4E-12 103.0 12.6 39 46-84 7-45 (626)
183 TIGR01292 TRX_reduct thioredox 98.8 1.2E-07 2.6E-12 92.4 13.4 36 48-84 1-36 (300)
184 PRK08641 sdhA succinate dehydr 98.8 4.1E-07 8.8E-12 96.4 18.4 40 46-85 2-41 (589)
185 TIGR03197 MnmC_Cterm tRNA U-34 98.7 2.8E-06 6.1E-11 85.7 23.5 57 251-311 135-192 (381)
186 PRK12769 putative oxidoreducta 98.7 1.7E-07 3.8E-12 100.8 15.5 46 45-90 325-370 (654)
187 COG5044 MRS6 RAB proteins gera 98.7 4.3E-07 9.3E-12 85.5 15.7 241 45-304 4-279 (434)
188 PTZ00058 glutathione reductase 98.7 1.5E-07 3.2E-12 98.4 13.8 47 42-89 43-90 (561)
189 TIGR01789 lycopene_cycl lycope 98.7 2.7E-06 5.9E-11 84.9 22.3 36 49-84 1-38 (370)
190 PRK08275 putative oxidoreducta 98.7 6.2E-07 1.3E-11 94.6 18.3 58 251-309 137-200 (554)
191 PRK08071 L-aspartate oxidase; 98.7 1.1E-07 2.5E-12 98.9 12.5 57 251-310 130-191 (510)
192 PRK06854 adenylylsulfate reduc 98.7 6.3E-07 1.4E-11 95.2 17.8 56 252-309 133-195 (608)
193 COG3573 Predicted oxidoreducta 98.7 1.9E-07 4.1E-12 86.6 11.7 41 45-85 3-45 (552)
194 KOG1298 Squalene monooxygenase 98.7 1.4E-06 3.1E-11 82.5 17.3 40 41-80 39-78 (509)
195 TIGR02053 MerA mercuric reduct 98.7 4.1E-07 8.8E-12 94.2 15.4 60 251-311 207-268 (463)
196 COG0492 TrxB Thioredoxin reduc 98.7 2.5E-07 5.4E-12 88.7 12.4 54 252-309 62-115 (305)
197 PF04820 Trp_halogenase: Trypt 98.7 1.8E-07 3.8E-12 95.8 12.2 56 252-309 155-211 (454)
198 PRK06069 sdhA succinate dehydr 98.7 5.9E-07 1.3E-11 95.2 16.0 58 250-309 136-200 (577)
199 PTZ00306 NADH-dependent fumara 98.7 1.3E-06 2.7E-11 99.6 19.5 40 46-85 408-447 (1167)
200 PRK09077 L-aspartate oxidase; 98.6 5.9E-07 1.3E-11 94.3 15.5 60 250-309 137-207 (536)
201 PRK12775 putative trifunctiona 98.6 1.6E-07 3.5E-12 104.6 11.9 65 46-110 429-496 (1006)
202 PRK11749 dihydropyrimidine deh 98.6 8.6E-07 1.9E-11 91.5 16.4 46 44-89 137-182 (457)
203 KOG2404 Fumarate reductase, fl 98.6 3.1E-07 6.7E-12 84.7 11.5 37 49-85 11-47 (477)
204 KOG2853 Possible oxidoreductas 98.6 1.2E-05 2.6E-10 75.1 21.8 79 399-489 402-482 (509)
205 PRK08205 sdhA succinate dehydr 98.6 8.4E-07 1.8E-11 94.1 16.5 60 250-309 139-206 (583)
206 TIGR02485 CobZ_N-term precorri 98.6 4.5E-07 9.7E-12 93.0 14.0 60 250-309 122-183 (432)
207 PLN02546 glutathione reductase 98.6 8E-07 1.7E-11 93.0 15.9 34 45-78 77-110 (558)
208 TIGR01176 fum_red_Fp fumarate 98.6 8.5E-07 1.8E-11 93.6 16.2 58 250-309 131-195 (580)
209 TIGR01811 sdhA_Bsu succinate d 98.6 9.9E-07 2.1E-11 93.6 16.7 59 250-309 128-196 (603)
210 TIGR02352 thiamin_ThiO glycine 98.6 4.4E-06 9.5E-11 82.8 20.5 197 251-488 137-335 (337)
211 TIGR03140 AhpF alkyl hydropero 98.6 2.9E-07 6.2E-12 96.3 12.5 39 44-84 209-247 (515)
212 TIGR03219 salicylate_mono sali 98.6 1.5E-07 3.3E-12 96.0 10.2 58 48-110 1-59 (414)
213 PRK15317 alkyl hydroperoxide r 98.6 3.5E-07 7.6E-12 95.7 13.0 39 44-84 208-246 (517)
214 PRK12778 putative bifunctional 98.6 2.6E-07 5.6E-12 101.1 12.2 46 45-90 429-474 (752)
215 TIGR02462 pyranose_ox pyranose 98.6 4.3E-07 9.4E-12 93.7 12.6 45 48-93 1-45 (544)
216 PRK06416 dihydrolipoamide dehy 98.6 8.8E-07 1.9E-11 91.7 14.9 39 46-85 3-41 (462)
217 COG1249 Lpd Pyruvate/2-oxoglut 98.6 6E-07 1.3E-11 90.7 13.2 41 45-85 2-42 (454)
218 PRK09231 fumarate reductase fl 98.6 1.2E-06 2.5E-11 92.8 15.8 58 250-309 132-196 (582)
219 PRK06467 dihydrolipoamide dehy 98.6 1.4E-06 3E-11 90.2 15.9 40 46-85 3-42 (471)
220 PRK05976 dihydrolipoamide dehy 98.6 1.7E-06 3.8E-11 89.7 16.1 39 46-85 3-41 (472)
221 PRK09897 hypothetical protein; 98.6 9.4E-07 2E-11 91.4 13.9 37 47-83 1-39 (534)
222 PRK07512 L-aspartate oxidase; 98.6 1.2E-06 2.6E-11 91.4 14.6 58 250-309 135-197 (513)
223 TIGR03143 AhpF_homolog putativ 98.5 7.8E-07 1.7E-11 93.8 13.3 38 46-84 3-40 (555)
224 PLN02507 glutathione reductase 98.5 3E-06 6.4E-11 88.1 17.3 61 249-312 242-303 (499)
225 PF01134 GIDA: Glucose inhibit 98.5 2.9E-07 6.2E-12 90.2 8.9 53 253-308 97-151 (392)
226 PRK12809 putative oxidoreducta 98.5 1.3E-06 2.9E-11 93.6 14.8 66 45-110 308-376 (639)
227 PF06039 Mqo: Malate:quinone o 98.5 1.1E-06 2.4E-11 86.3 10.8 84 252-343 182-271 (488)
228 KOG4405 GDP dissociation inhib 98.4 1E-05 2.2E-10 77.3 15.8 151 151-306 187-342 (547)
229 PRK09564 coenzyme A disulfide 98.4 2.1E-06 4.7E-11 88.5 12.3 64 250-316 190-253 (444)
230 PF13454 NAD_binding_9: FAD-NA 98.4 6.5E-06 1.4E-10 71.4 13.1 31 51-81 1-36 (156)
231 PRK06327 dihydrolipoamide dehy 98.4 1E-05 2.2E-10 84.0 16.9 33 46-78 3-35 (475)
232 PRK02106 choline dehydrogenase 98.4 5.4E-06 1.2E-10 87.8 15.1 53 263-317 213-270 (560)
233 TIGR02061 aprA adenosine phosp 98.4 1.4E-05 3.1E-10 84.4 17.9 58 252-309 127-191 (614)
234 PRK09754 phenylpropionate diox 98.4 8.7E-06 1.9E-10 82.5 15.6 61 252-315 187-247 (396)
235 COG0029 NadB Aspartate oxidase 98.4 0.00011 2.4E-09 72.8 22.2 63 245-308 127-195 (518)
236 KOG0042 Glycerol-3-phosphate d 98.4 3.4E-07 7.3E-12 90.3 4.6 43 43-85 63-105 (680)
237 PTZ00318 NADH dehydrogenase-li 98.4 2.7E-05 5.9E-10 79.6 18.8 55 249-309 226-280 (424)
238 TIGR01810 betA choline dehydro 98.4 6.2E-06 1.3E-10 86.9 14.1 60 256-317 198-263 (532)
239 COG0445 GidA Flavin-dependent 98.3 2.3E-05 5.1E-10 78.2 16.6 33 47-79 4-36 (621)
240 KOG1335 Dihydrolipoamide dehyd 98.3 3.7E-06 8.1E-11 79.7 10.2 44 46-89 38-82 (506)
241 PRK13800 putative oxidoreducta 98.3 3E-05 6.5E-10 86.5 18.2 36 46-81 12-47 (897)
242 PRK14989 nitrite reductase sub 98.3 7.8E-06 1.7E-10 89.7 13.2 65 251-316 187-252 (847)
243 KOG1399 Flavin-containing mono 98.3 9E-07 2E-11 89.0 5.3 41 45-85 4-44 (448)
244 COG2072 TrkA Predicted flavopr 98.2 1.4E-06 3E-11 88.8 5.9 43 43-85 4-47 (443)
245 COG1148 HdrA Heterodisulfide r 98.2 1.3E-06 2.7E-11 85.3 5.0 41 45-85 122-162 (622)
246 TIGR03169 Nterm_to_SelD pyridi 98.2 7.4E-05 1.6E-09 74.9 17.5 54 251-310 191-244 (364)
247 TIGR03315 Se_ygfK putative sel 98.2 1.7E-06 3.7E-11 94.9 6.0 45 45-89 535-579 (1012)
248 PRK06115 dihydrolipoamide dehy 98.2 1.6E-06 3.5E-11 89.6 5.2 44 46-89 2-46 (466)
249 PRK07845 flavoprotein disulfid 98.2 5.7E-05 1.2E-09 78.2 16.6 38 47-85 1-38 (466)
250 PLN02852 ferredoxin-NADP+ redu 98.2 3.3E-06 7.1E-11 86.4 7.1 46 45-90 24-71 (491)
251 PRK08010 pyridine nucleotide-d 98.2 2E-06 4.4E-11 88.4 5.5 58 251-311 199-256 (441)
252 COG2303 BetA Choline dehydroge 98.2 4.3E-05 9.3E-10 80.1 15.2 38 44-81 4-41 (542)
253 PRK14694 putative mercuric red 98.1 2.6E-06 5.6E-11 88.2 5.7 61 250-313 217-277 (468)
254 PF00743 FMO-like: Flavin-bind 98.1 2.4E-06 5.2E-11 88.8 4.9 39 47-85 1-39 (531)
255 TIGR01350 lipoamide_DH dihydro 98.1 3E-06 6.4E-11 87.8 5.5 58 251-310 211-270 (461)
256 PRK06292 dihydrolipoamide dehy 98.1 3.2E-06 7E-11 87.5 5.5 39 46-85 2-40 (460)
257 PF07156 Prenylcys_lyase: Pren 98.1 0.00027 5.9E-09 69.7 18.4 116 180-308 65-186 (368)
258 TIGR02374 nitri_red_nirB nitri 98.1 2.2E-05 4.7E-10 86.2 11.7 60 252-314 183-243 (785)
259 PRK09853 putative selenate red 98.1 4.1E-06 8.9E-11 91.6 5.9 45 45-89 537-581 (1019)
260 PTZ00188 adrenodoxin reductase 98.1 6.9E-06 1.5E-10 82.8 6.6 46 46-91 38-84 (506)
261 TIGR01318 gltD_gamma_fam gluta 98.0 7E-06 1.5E-10 84.7 6.5 65 46-110 140-207 (467)
262 KOG3923 D-aspartate oxidase [A 98.0 0.00014 3E-09 67.1 13.3 185 252-492 152-339 (342)
263 PRK07818 dihydrolipoamide dehy 98.0 7.5E-06 1.6E-10 84.8 5.8 42 47-89 4-46 (466)
264 PRK12810 gltD glutamate syntha 98.0 8.8E-06 1.9E-10 84.2 6.1 45 45-89 141-185 (471)
265 PRK05335 tRNA (uracil-5-)-meth 98.0 7.8E-06 1.7E-10 81.1 5.3 36 47-82 2-37 (436)
266 PRK14727 putative mercuric red 98.0 9.6E-06 2.1E-10 84.2 6.0 61 250-313 227-287 (479)
267 PRK04965 NADH:flavorubredoxin 98.0 5.3E-05 1.1E-09 76.3 11.2 43 262-309 69-111 (377)
268 PRK06567 putative bifunctional 98.0 9.7E-06 2.1E-10 87.7 6.0 39 44-82 380-418 (1028)
269 PRK12814 putative NADPH-depend 98.0 1.4E-05 3E-10 85.9 7.0 46 45-90 191-236 (652)
270 COG0493 GltD NADPH-dependent g 98.0 1.3E-05 2.8E-10 81.2 6.3 66 45-110 121-189 (457)
271 PRK10262 thioredoxin reductase 97.9 1.2E-05 2.7E-10 79.0 5.5 41 44-85 3-43 (321)
272 PRK13748 putative mercuric red 97.9 1.2E-05 2.5E-10 85.6 5.4 60 250-312 309-368 (561)
273 PTZ00153 lipoamide dehydrogena 97.9 2.1E-05 4.5E-10 83.7 6.9 44 46-89 115-160 (659)
274 PRK04965 NADH:flavorubredoxin 97.9 0.00018 4E-09 72.4 12.8 56 257-314 189-244 (377)
275 TIGR01423 trypano_reduc trypan 97.8 2.1E-05 4.6E-10 81.4 5.7 61 250-312 230-291 (486)
276 PTZ00052 thioredoxin reductase 97.8 2.2E-05 4.8E-10 81.7 5.2 63 250-314 221-283 (499)
277 TIGR00137 gid_trmFO tRNA:m(5)U 97.8 2.3E-05 5.1E-10 78.3 5.0 36 48-83 1-36 (433)
278 TIGR01317 GOGAT_sm_gam glutama 97.8 3E-05 6.5E-10 80.4 6.0 44 46-89 142-185 (485)
279 TIGR01372 soxA sarcosine oxida 97.8 2.5E-05 5.5E-10 87.8 5.4 40 47-86 163-202 (985)
280 PF00070 Pyr_redox: Pyridine n 97.8 5E-05 1.1E-09 57.5 5.4 35 49-83 1-35 (80)
281 KOG0405 Pyridine nucleotide-di 97.8 4.2E-05 9.1E-10 71.8 5.6 60 249-309 228-287 (478)
282 PRK12770 putative glutamate sy 97.8 5.3E-05 1.2E-09 75.4 6.8 41 46-86 17-57 (352)
283 PF07992 Pyr_redox_2: Pyridine 97.7 3.7E-05 8.1E-10 69.9 5.2 32 49-80 1-32 (201)
284 PRK06416 dihydrolipoamide dehy 97.7 0.00046 1E-08 71.5 13.1 35 47-81 172-206 (462)
285 TIGR01350 lipoamide_DH dihydro 97.7 0.00052 1.1E-08 71.2 13.4 36 47-82 170-205 (461)
286 PRK12771 putative glutamate sy 97.7 5.9E-05 1.3E-09 80.0 6.4 45 45-89 135-179 (564)
287 KOG0399 Glutamate synthase [Am 97.7 5.5E-05 1.2E-09 80.8 5.2 49 42-90 1780-1828(2142)
288 PRK06912 acoL dihydrolipoamide 97.6 6.2E-05 1.3E-09 77.8 5.7 57 251-310 211-269 (458)
289 COG1053 SdhA Succinate dehydro 97.6 6.4E-05 1.4E-09 78.4 5.5 42 44-85 3-44 (562)
290 KOG1800 Ferredoxin/adrenodoxin 97.6 7.9E-05 1.7E-09 70.9 5.4 45 45-89 18-64 (468)
291 PRK05976 dihydrolipoamide dehy 97.6 0.00074 1.6E-08 70.2 13.2 35 47-81 180-214 (472)
292 TIGR03385 CoA_CoA_reduc CoA-di 97.6 0.00061 1.3E-08 69.9 12.2 56 257-316 185-240 (427)
293 PRK13984 putative oxidoreducta 97.6 9.3E-05 2E-09 79.3 6.1 46 44-89 280-325 (604)
294 PF13434 K_oxygenase: L-lysine 97.6 0.00085 1.8E-08 66.0 12.2 36 47-82 2-38 (341)
295 TIGR01438 TGR thioredoxin and 97.5 9.7E-05 2.1E-09 76.6 5.3 61 250-312 219-282 (484)
296 TIGR03377 glycerol3P_GlpA glyc 97.5 0.016 3.4E-07 61.0 21.9 59 251-311 128-192 (516)
297 PRK06115 dihydrolipoamide dehy 97.5 0.0013 2.8E-08 68.1 13.0 35 47-81 174-208 (466)
298 PRK08255 salicylyl-CoA 5-hydro 97.5 0.00011 2.4E-09 80.6 5.1 34 48-81 1-36 (765)
299 PRK07818 dihydrolipoamide dehy 97.5 0.0015 3.3E-08 67.7 13.4 35 47-81 172-206 (466)
300 PRK07845 flavoprotein disulfid 97.5 0.0014 3.1E-08 67.9 12.9 35 47-81 177-211 (466)
301 PRK06912 acoL dihydrolipoamide 97.4 0.0018 4E-08 66.9 13.0 36 47-82 170-205 (458)
302 PRK14694 putative mercuric red 97.4 0.0021 4.5E-08 66.7 13.4 33 47-79 178-210 (468)
303 PRK07846 mycothione reductase; 97.4 0.0022 4.7E-08 66.1 13.3 35 47-81 166-200 (451)
304 PRK08010 pyridine nucleotide-d 97.4 0.0018 4E-08 66.6 12.8 36 47-82 158-193 (441)
305 PRK06327 dihydrolipoamide dehy 97.4 0.0021 4.4E-08 66.9 13.2 35 47-81 183-217 (475)
306 TIGR01424 gluta_reduc_2 glutat 97.4 0.002 4.3E-08 66.4 12.7 34 47-80 166-199 (446)
307 KOG0404 Thioredoxin reductase 97.4 0.00085 1.8E-08 59.3 8.1 61 251-315 70-130 (322)
308 TIGR03862 flavo_PP4765 unchara 97.4 0.0021 4.6E-08 63.6 12.0 61 244-309 79-141 (376)
309 PRK14727 putative mercuric red 97.3 0.0027 5.8E-08 66.1 13.1 33 47-79 188-220 (479)
310 TIGR01423 trypano_reduc trypan 97.3 0.0026 5.7E-08 65.9 12.8 36 47-82 187-225 (486)
311 PRK13512 coenzyme A disulfide 97.3 0.0018 3.8E-08 66.6 11.5 35 47-81 148-182 (438)
312 COG3634 AhpF Alkyl hydroperoxi 97.3 0.00051 1.1E-08 64.7 6.2 41 43-85 207-247 (520)
313 PRK13748 putative mercuric red 97.3 0.0033 7.1E-08 67.0 13.1 33 47-79 270-302 (561)
314 KOG2960 Protein involved in th 97.2 0.00014 3.1E-09 63.4 1.7 38 47-84 76-115 (328)
315 PRK13512 coenzyme A disulfide 97.2 0.00042 9.1E-09 71.2 5.0 61 250-316 188-248 (438)
316 PRK07846 mycothione reductase; 97.2 0.00043 9.4E-09 71.2 5.1 60 252-314 208-267 (451)
317 TIGR03452 mycothione_red mycot 97.2 0.0059 1.3E-07 63.0 13.2 34 47-80 169-202 (452)
318 PLN02785 Protein HOTHEAD 97.2 0.00056 1.2E-08 72.3 5.7 35 45-80 53-87 (587)
319 PTZ00052 thioredoxin reductase 97.2 0.0056 1.2E-07 63.9 13.0 33 47-79 182-214 (499)
320 PRK10262 thioredoxin reductase 97.2 0.0031 6.8E-08 61.9 10.7 33 47-79 146-178 (321)
321 KOG2665 Predicted FAD-dependen 97.1 0.00037 8E-09 64.7 3.3 60 252-311 197-259 (453)
322 TIGR01438 TGR thioredoxin and 97.1 0.0064 1.4E-07 63.2 12.9 33 47-79 180-212 (484)
323 PLN02546 glutathione reductase 97.1 0.006 1.3E-07 64.2 12.8 35 47-81 252-286 (558)
324 PRK06467 dihydrolipoamide dehy 97.1 0.0058 1.3E-07 63.4 12.6 35 47-81 174-208 (471)
325 TIGR03452 mycothione_red mycot 97.0 0.00098 2.1E-08 68.7 5.2 59 252-313 211-269 (452)
326 COG1206 Gid NAD(FAD)-utilizing 96.9 0.00095 2.1E-08 62.5 3.8 36 46-81 2-37 (439)
327 KOG1336 Monodehydroascorbate/f 96.9 0.0071 1.5E-07 60.0 10.0 60 255-315 259-319 (478)
328 COG0446 HcaD Uncharacterized N 96.7 0.002 4.4E-08 65.6 5.0 38 47-84 136-173 (415)
329 KOG3855 Monooxygenase involved 96.6 0.0028 6.1E-08 61.4 5.1 40 40-79 29-72 (481)
330 KOG2495 NADH-dehydrogenase (ub 96.6 0.073 1.6E-06 52.2 14.2 40 43-82 51-90 (491)
331 COG4529 Uncharacterized protei 96.5 0.0034 7.4E-08 62.6 5.0 38 47-84 1-41 (474)
332 KOG4716 Thioredoxin reductase 96.4 0.0037 7.9E-08 58.9 4.0 64 247-311 234-302 (503)
333 KOG1238 Glucose dehydrogenase/ 96.3 0.005 1.1E-07 63.6 4.9 41 41-81 51-92 (623)
334 PF13434 K_oxygenase: L-lysine 96.3 0.089 1.9E-06 51.9 13.5 37 44-80 187-225 (341)
335 PF03721 UDPG_MGDP_dh_N: UDP-g 96.2 0.0057 1.2E-07 54.4 4.1 33 48-80 1-33 (185)
336 COG1251 NirB NAD(P)H-nitrite r 96.1 0.036 7.7E-07 58.1 9.7 56 255-313 191-247 (793)
337 PF01210 NAD_Gly3P_dh_N: NAD-d 96.0 0.0098 2.1E-07 51.5 4.7 31 49-79 1-31 (157)
338 PRK09754 phenylpropionate diox 95.8 0.012 2.7E-07 59.6 5.2 38 47-84 144-181 (396)
339 PRK06249 2-dehydropantoate 2-r 95.8 0.014 3.1E-07 56.9 5.4 36 44-79 2-37 (313)
340 PF02737 3HCDH_N: 3-hydroxyacy 95.8 0.015 3.2E-07 51.6 4.9 32 49-80 1-32 (180)
341 PRK01438 murD UDP-N-acetylmura 95.6 0.015 3.3E-07 60.6 5.2 34 47-80 16-49 (480)
342 PRK07251 pyridine nucleotide-d 95.5 0.021 4.6E-07 58.7 5.6 38 47-84 157-194 (438)
343 PF02558 ApbA: Ketopantoate re 95.4 0.024 5.3E-07 48.6 4.9 30 50-79 1-30 (151)
344 KOG2311 NAD/FAD-utilizing prot 95.4 0.016 3.4E-07 57.3 3.9 36 44-79 25-60 (679)
345 COG3486 IucD Lysine/ornithine 95.3 0.15 3.2E-06 50.0 9.9 38 45-82 3-41 (436)
346 PRK07819 3-hydroxybutyryl-CoA 95.2 0.028 6E-07 54.0 4.9 33 48-80 6-38 (286)
347 PRK02705 murD UDP-N-acetylmura 95.2 0.025 5.4E-07 58.6 4.9 33 49-81 2-34 (459)
348 PRK06129 3-hydroxyacyl-CoA deh 95.2 0.026 5.6E-07 55.0 4.7 33 48-80 3-35 (308)
349 COG0569 TrkA K+ transport syst 95.1 0.026 5.5E-07 52.0 4.4 34 48-81 1-34 (225)
350 PF13738 Pyr_redox_3: Pyridine 95.0 0.029 6.3E-07 50.8 4.4 36 45-80 165-200 (203)
351 COG1249 Lpd Pyruvate/2-oxoglut 95.0 0.036 7.8E-07 56.5 5.2 38 45-82 171-208 (454)
352 COG1004 Ugd Predicted UDP-gluc 95.0 0.03 6.4E-07 54.6 4.3 33 48-80 1-33 (414)
353 TIGR02053 MerA mercuric reduct 94.9 0.032 7E-07 57.8 5.0 37 47-83 166-202 (463)
354 TIGR01421 gluta_reduc_1 glutat 94.9 0.036 7.8E-07 57.2 5.2 37 47-83 166-202 (450)
355 PRK07066 3-hydroxybutyryl-CoA 94.9 0.044 9.6E-07 53.2 5.4 34 47-80 7-40 (321)
356 PRK06370 mercuric reductase; V 94.9 0.041 8.9E-07 57.1 5.5 38 47-84 171-208 (463)
357 PRK05708 2-dehydropantoate 2-r 94.8 0.038 8.2E-07 53.7 4.8 33 47-79 2-34 (305)
358 PF01262 AlaDh_PNT_C: Alanine 94.8 0.043 9.2E-07 48.1 4.7 36 44-79 17-52 (168)
359 cd01080 NAD_bind_m-THF_DH_Cycl 94.7 0.031 6.7E-07 48.7 3.5 36 44-79 41-77 (168)
360 PRK08293 3-hydroxybutyryl-CoA 94.7 0.044 9.6E-07 52.8 4.9 33 48-80 4-36 (287)
361 PRK14106 murD UDP-N-acetylmura 94.6 0.052 1.1E-06 56.1 5.6 35 46-80 4-38 (450)
362 PRK06292 dihydrolipoamide dehy 94.6 0.051 1.1E-06 56.3 5.4 36 47-82 169-204 (460)
363 PRK05249 soluble pyridine nucl 94.6 0.049 1.1E-06 56.5 5.2 36 47-82 175-210 (461)
364 PRK08229 2-dehydropantoate 2-r 94.5 0.044 9.5E-07 54.3 4.5 33 47-79 2-34 (341)
365 TIGR01372 soxA sarcosine oxida 94.4 0.51 1.1E-05 53.7 13.2 53 261-316 361-418 (985)
366 PRK11064 wecC UDP-N-acetyl-D-m 94.4 0.05 1.1E-06 55.3 4.7 35 47-81 3-37 (415)
367 PRK04148 hypothetical protein; 94.4 0.047 1E-06 45.2 3.6 34 47-81 17-50 (134)
368 TIGR01470 cysG_Nterm siroheme 94.4 0.073 1.6E-06 48.2 5.2 33 47-79 9-41 (205)
369 PRK09260 3-hydroxybutyryl-CoA 94.3 0.05 1.1E-06 52.5 4.3 33 48-80 2-34 (288)
370 PRK07530 3-hydroxybutyryl-CoA 94.2 0.072 1.6E-06 51.5 5.2 34 47-80 4-37 (292)
371 PRK06522 2-dehydropantoate 2-r 94.1 0.063 1.4E-06 52.2 4.7 32 48-79 1-32 (304)
372 TIGR02374 nitri_red_nirB nitri 94.1 0.062 1.3E-06 59.4 5.0 37 47-83 140-176 (785)
373 PF13241 NAD_binding_7: Putati 94.1 0.046 1E-06 43.4 2.9 34 46-79 6-39 (103)
374 PRK05808 3-hydroxybutyryl-CoA 94.0 0.072 1.6E-06 51.2 4.6 33 48-80 4-36 (282)
375 PRK12921 2-dehydropantoate 2-r 94.0 0.07 1.5E-06 51.9 4.6 31 48-78 1-31 (305)
376 TIGR01816 sdhA_forward succina 93.9 0.23 5E-06 52.8 8.7 58 250-309 118-181 (565)
377 PRK06719 precorrin-2 dehydroge 93.9 0.11 2.4E-06 44.8 5.2 32 46-77 12-43 (157)
378 PF01488 Shikimate_DH: Shikima 93.9 0.12 2.6E-06 43.3 5.2 35 45-79 10-45 (135)
379 PRK06718 precorrin-2 dehydroge 93.8 0.11 2.4E-06 47.0 5.2 34 46-79 9-42 (202)
380 cd05292 LDH_2 A subgroup of L- 93.8 0.085 1.8E-06 51.3 4.9 33 48-80 1-35 (308)
381 PRK09564 coenzyme A disulfide 93.8 0.085 1.8E-06 54.4 5.2 37 47-83 149-185 (444)
382 TIGR01763 MalateDH_bact malate 93.8 0.093 2E-06 50.8 5.1 33 48-80 2-35 (305)
383 PRK06035 3-hydroxyacyl-CoA deh 93.8 0.085 1.8E-06 50.9 4.8 33 48-80 4-36 (291)
384 PTZ00058 glutathione reductase 93.8 0.081 1.7E-06 55.8 4.9 36 47-82 237-272 (561)
385 TIGR03140 AhpF alkyl hydropero 93.8 0.082 1.8E-06 55.5 5.0 35 47-81 352-386 (515)
386 PRK14989 nitrite reductase sub 93.7 0.082 1.8E-06 58.6 5.1 36 47-82 145-180 (847)
387 PTZ00153 lipoamide dehydrogena 93.7 0.087 1.9E-06 56.5 5.1 36 47-82 312-347 (659)
388 KOG2755 Oxidoreductase [Genera 93.6 0.042 9.2E-07 50.1 2.1 34 49-82 1-36 (334)
389 TIGR01316 gltA glutamate synth 93.6 0.09 2E-06 54.2 4.8 34 47-80 272-305 (449)
390 TIGR02354 thiF_fam2 thiamine b 93.5 0.13 2.7E-06 46.5 5.1 34 46-79 20-54 (200)
391 PRK06116 glutathione reductase 93.5 0.11 2.3E-06 53.8 5.2 36 47-82 167-202 (450)
392 PLN02507 glutathione reductase 93.5 0.1 2.2E-06 54.5 5.1 36 47-82 203-238 (499)
393 COG1748 LYS9 Saccharopine dehy 93.4 0.11 2.4E-06 51.4 4.8 33 47-79 1-34 (389)
394 TIGR03143 AhpF_homolog putativ 93.2 0.1 2.2E-06 55.4 4.7 36 47-82 143-178 (555)
395 TIGR00518 alaDH alanine dehydr 93.2 0.16 3.5E-06 50.7 5.7 34 46-79 166-199 (370)
396 PRK15317 alkyl hydroperoxide r 93.1 0.12 2.6E-06 54.4 4.9 35 47-81 351-385 (517)
397 PRK12831 putative oxidoreducta 93.1 0.13 2.9E-06 53.1 5.1 35 46-80 280-314 (464)
398 PRK05675 sdhA succinate dehydr 92.9 0.4 8.7E-06 51.0 8.6 59 250-309 125-189 (570)
399 TIGR03026 NDP-sugDHase nucleot 92.9 0.11 2.5E-06 52.8 4.2 33 49-81 2-34 (411)
400 PRK12770 putative glutamate sy 92.8 0.13 2.9E-06 51.1 4.5 34 47-80 172-206 (352)
401 PRK14619 NAD(P)H-dependent gly 92.7 0.19 4.1E-06 48.9 5.4 34 47-80 4-37 (308)
402 PLN02353 probable UDP-glucose 92.7 0.14 3E-06 52.7 4.6 34 48-81 2-37 (473)
403 PLN02545 3-hydroxybutyryl-CoA 92.7 0.18 4E-06 48.7 5.2 33 48-80 5-37 (295)
404 TIGR01292 TRX_reduct thioredox 92.7 0.16 3.6E-06 49.0 4.9 34 47-80 141-174 (300)
405 KOG2304 3-hydroxyacyl-CoA dehy 92.7 0.14 3.1E-06 45.6 3.9 35 46-80 10-44 (298)
406 PRK14618 NAD(P)H-dependent gly 92.7 0.18 4E-06 49.6 5.2 33 47-79 4-36 (328)
407 PRK06130 3-hydroxybutyryl-CoA 92.6 0.17 3.6E-06 49.4 4.9 33 48-80 5-37 (311)
408 PRK14620 NAD(P)H-dependent gly 92.6 0.16 3.6E-06 49.9 4.8 31 49-79 2-32 (326)
409 PF00056 Ldh_1_N: lactate/mala 92.5 0.25 5.3E-06 41.8 5.1 32 48-79 1-35 (141)
410 cd01075 NAD_bind_Leu_Phe_Val_D 92.4 0.29 6.4E-06 44.1 5.9 35 45-79 26-60 (200)
411 PRK00094 gpsA NAD(P)H-dependen 92.2 0.21 4.5E-06 49.1 5.0 32 48-79 2-33 (325)
412 PRK09424 pntA NAD(P) transhydr 92.2 0.22 4.8E-06 51.5 5.2 35 45-79 163-197 (509)
413 COG0686 Ald Alanine dehydrogen 92.1 0.13 2.7E-06 48.4 3.1 36 44-79 165-200 (371)
414 PRK02472 murD UDP-N-acetylmura 92.1 0.23 5.1E-06 51.2 5.4 34 47-80 5-38 (447)
415 COG1893 ApbA Ketopantoate redu 92.0 0.17 3.6E-06 49.1 3.9 33 48-80 1-33 (307)
416 PRK04690 murD UDP-N-acetylmura 92.0 0.21 4.7E-06 51.7 5.0 34 47-80 8-41 (468)
417 PRK00066 ldh L-lactate dehydro 92.0 0.3 6.6E-06 47.5 5.7 35 45-79 4-40 (315)
418 PF00899 ThiF: ThiF family; I 91.9 0.25 5.5E-06 41.4 4.5 33 47-79 2-35 (135)
419 PRK08268 3-hydroxy-acyl-CoA de 91.9 0.28 6E-06 51.2 5.6 35 47-81 7-41 (507)
420 PRK01710 murD UDP-N-acetylmura 91.8 0.24 5.2E-06 51.3 5.1 34 47-80 14-47 (458)
421 cd05191 NAD_bind_amino_acid_DH 91.8 0.45 9.8E-06 36.2 5.4 33 46-78 22-55 (86)
422 PRK04308 murD UDP-N-acetylmura 91.8 0.29 6.4E-06 50.4 5.8 34 47-80 5-38 (445)
423 PF03446 NAD_binding_2: NAD bi 91.8 0.28 6E-06 42.7 4.8 33 47-79 1-33 (163)
424 PTZ00318 NADH dehydrogenase-li 91.7 0.25 5.5E-06 50.5 5.1 57 48-110 174-244 (424)
425 PRK06223 malate dehydrogenase; 91.7 0.28 6.1E-06 47.7 5.2 33 48-80 3-36 (307)
426 PRK15057 UDP-glucose 6-dehydro 91.7 0.22 4.8E-06 50.0 4.5 32 49-81 2-33 (388)
427 cd05293 LDH_1 A subgroup of L- 91.6 0.31 6.8E-06 47.3 5.3 35 46-80 2-38 (312)
428 PTZ00082 L-lactate dehydrogena 91.6 0.3 6.5E-06 47.7 5.2 34 48-81 7-41 (321)
429 PLN02572 UDP-sulfoquinovose sy 91.6 0.38 8.2E-06 49.5 6.2 40 40-79 40-80 (442)
430 PLN02712 arogenate dehydrogena 91.5 0.46 1E-05 51.2 7.0 39 41-79 46-84 (667)
431 PRK07417 arogenate dehydrogena 91.5 0.24 5.3E-06 47.4 4.5 31 49-79 2-32 (279)
432 PRK12549 shikimate 5-dehydroge 91.5 0.34 7.3E-06 46.4 5.4 34 46-79 126-160 (284)
433 cd00401 AdoHcyase S-adenosyl-L 91.5 0.29 6.3E-06 49.2 5.1 35 46-80 201-235 (413)
434 PRK01368 murD UDP-N-acetylmura 91.5 0.27 5.9E-06 50.6 5.0 33 46-79 5-37 (454)
435 PRK12475 thiamine/molybdopteri 91.4 0.31 6.7E-06 47.9 5.1 34 46-79 23-57 (338)
436 PRK07688 thiamine/molybdopteri 91.3 0.32 6.8E-06 47.9 5.1 34 46-79 23-57 (339)
437 TIGR02437 FadB fatty oxidation 91.3 0.3 6.5E-06 53.2 5.3 35 46-80 312-346 (714)
438 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.3 0.29 6.2E-06 50.9 5.0 34 47-80 5-38 (503)
439 KOG3851 Sulfide:quinone oxidor 91.2 0.2 4.4E-06 47.3 3.3 38 44-81 36-75 (446)
440 PLN00016 RNA-binding protein; 91.2 0.27 5.8E-06 49.5 4.6 40 41-80 46-90 (378)
441 PRK03369 murD UDP-N-acetylmura 91.2 0.31 6.7E-06 50.8 5.2 33 47-79 12-44 (488)
442 PF02254 TrkA_N: TrkA-N domain 91.1 0.41 8.8E-06 38.8 4.8 31 50-80 1-31 (116)
443 PRK11730 fadB multifunctional 91.1 0.3 6.5E-06 53.3 5.1 34 47-80 313-346 (715)
444 PRK15116 sulfur acceptor prote 91.1 0.38 8.2E-06 45.3 5.1 34 46-79 29-63 (268)
445 COG0771 MurD UDP-N-acetylmuram 91.1 0.32 6.9E-06 49.2 4.9 37 46-82 6-42 (448)
446 PRK11749 dihydropyrimidine deh 91.0 0.3 6.5E-06 50.6 4.8 35 46-80 272-307 (457)
447 PRK07531 bifunctional 3-hydrox 91.0 0.27 5.9E-06 51.2 4.5 33 48-80 5-37 (495)
448 cd05311 NAD_bind_2_malic_enz N 90.9 0.36 7.7E-06 44.5 4.7 35 46-80 24-61 (226)
449 cd05291 HicDH_like L-2-hydroxy 90.9 0.35 7.6E-06 47.0 4.9 32 49-80 2-35 (306)
450 PRK08306 dipicolinate synthase 90.9 0.38 8.3E-06 46.4 5.1 35 46-80 151-185 (296)
451 PF00670 AdoHcyase_NAD: S-aden 90.8 0.35 7.6E-06 41.4 4.2 35 46-80 22-56 (162)
452 TIGR01915 npdG NADPH-dependent 90.8 0.35 7.7E-06 44.4 4.7 32 48-79 1-33 (219)
453 COG1250 FadB 3-hydroxyacyl-CoA 90.8 0.32 6.9E-06 46.6 4.3 33 47-79 3-35 (307)
454 TIGR02356 adenyl_thiF thiazole 90.5 0.48 1E-05 42.9 5.1 34 46-79 20-54 (202)
455 TIGR02441 fa_ox_alpha_mit fatt 90.5 0.33 7.2E-06 53.1 4.8 35 46-80 334-368 (737)
456 PRK12778 putative bifunctional 90.3 0.33 7.2E-06 53.6 4.7 34 47-80 570-604 (752)
457 COG3634 AhpF Alkyl hydroperoxi 90.3 0.25 5.3E-06 47.2 3.1 35 46-80 353-387 (520)
458 cd01487 E1_ThiF_like E1_ThiF_l 90.1 0.49 1.1E-05 41.7 4.7 31 49-79 1-32 (174)
459 PLN02172 flavin-containing mon 90.0 0.38 8.2E-06 49.6 4.5 35 46-80 203-237 (461)
460 PF00070 Pyr_redox: Pyridine n 90.0 0.88 1.9E-05 34.0 5.4 40 249-291 38-77 (80)
461 PRK00421 murC UDP-N-acetylmura 90.0 0.42 9.1E-06 49.5 4.9 34 47-80 7-41 (461)
462 PRK00683 murD UDP-N-acetylmura 89.9 0.42 9.1E-06 48.8 4.8 33 47-79 3-35 (418)
463 COG1252 Ndh NADH dehydrogenase 89.9 0.26 5.7E-06 49.2 3.1 60 46-111 154-226 (405)
464 PRK05866 short chain dehydroge 89.8 0.73 1.6E-05 44.5 6.2 34 46-79 39-73 (293)
465 PTZ00117 malate dehydrogenase; 89.8 0.53 1.2E-05 45.9 5.2 35 46-80 4-39 (319)
466 PRK05562 precorrin-2 dehydroge 89.8 0.57 1.2E-05 42.7 4.9 34 46-79 24-57 (223)
467 cd01078 NAD_bind_H4MPT_DH NADP 89.8 0.65 1.4E-05 41.7 5.4 34 46-79 27-61 (194)
468 PRK02006 murD UDP-N-acetylmura 89.7 0.48 1E-05 49.6 5.1 34 47-80 7-40 (498)
469 PRK07502 cyclohexadienyl dehyd 89.7 0.52 1.1E-05 45.8 5.1 33 47-79 6-40 (307)
470 TIGR02440 FadJ fatty oxidation 89.7 0.45 9.7E-06 51.9 5.0 35 46-80 303-338 (699)
471 KOG1335 Dihydrolipoamide dehyd 89.7 0.19 4.1E-06 48.7 1.8 39 47-85 211-249 (506)
472 TIGR00561 pntA NAD(P) transhyd 89.7 0.63 1.4E-05 48.0 5.7 34 46-79 163-196 (511)
473 COG2072 TrkA Predicted flavopr 89.6 0.48 1E-05 48.7 4.9 40 42-81 170-209 (443)
474 cd01483 E1_enzyme_family Super 89.5 0.64 1.4E-05 39.4 4.9 31 49-79 1-32 (143)
475 TIGR02853 spore_dpaA dipicolin 89.5 0.56 1.2E-05 45.0 5.0 35 46-80 150-184 (287)
476 cd01339 LDH-like_MDH L-lactate 89.5 0.44 9.6E-06 46.2 4.3 31 50-80 1-32 (300)
477 PLN02657 3,8-divinyl protochlo 89.5 0.96 2.1E-05 45.7 6.9 35 46-80 59-94 (390)
478 TIGR02355 moeB molybdopterin s 89.5 0.6 1.3E-05 43.4 5.0 34 46-79 23-57 (240)
479 PRK08644 thiamine biosynthesis 89.3 0.63 1.4E-05 42.4 4.9 34 46-79 27-61 (212)
480 TIGR00936 ahcY adenosylhomocys 89.2 0.55 1.2E-05 47.1 4.8 35 46-80 194-228 (406)
481 cd01065 NAD_bind_Shikimate_DH 89.1 0.82 1.8E-05 39.2 5.4 34 46-79 18-52 (155)
482 PRK00141 murD UDP-N-acetylmura 89.0 0.62 1.3E-05 48.4 5.3 34 46-79 14-47 (473)
483 PRK09496 trkA potassium transp 88.9 0.47 1E-05 49.0 4.4 33 48-80 1-33 (453)
484 PRK11199 tyrA bifunctional cho 88.8 0.68 1.5E-05 46.4 5.2 34 46-79 97-131 (374)
485 PRK11154 fadJ multifunctional 88.8 0.59 1.3E-05 51.1 5.1 35 46-80 308-343 (708)
486 TIGR00507 aroE shikimate 5-deh 88.8 0.68 1.5E-05 44.1 5.0 34 46-79 116-149 (270)
487 PRK05690 molybdopterin biosynt 88.7 0.74 1.6E-05 43.0 5.1 34 46-79 31-65 (245)
488 PRK11559 garR tartronate semia 88.6 0.68 1.5E-05 44.8 5.0 32 48-79 3-34 (296)
489 PRK12548 shikimate 5-dehydroge 88.6 0.79 1.7E-05 44.1 5.3 35 46-80 125-160 (289)
490 PLN02695 GDP-D-mannose-3',5'-e 88.6 0.82 1.8E-05 45.8 5.7 34 46-79 20-54 (370)
491 PRK03806 murD UDP-N-acetylmura 88.4 0.75 1.6E-05 47.3 5.4 33 47-79 6-38 (438)
492 PRK08328 hypothetical protein; 88.4 0.8 1.7E-05 42.4 5.0 34 46-79 26-60 (231)
493 PRK12779 putative bifunctional 88.4 0.58 1.2E-05 52.7 4.8 34 47-80 447-480 (944)
494 PLN02602 lactate dehydrogenase 88.3 0.87 1.9E-05 44.9 5.5 33 48-80 38-72 (350)
495 cd05290 LDH_3 A subgroup of L- 88.2 0.73 1.6E-05 44.6 4.8 31 49-79 1-33 (307)
496 PRK05476 S-adenosyl-L-homocyst 88.2 0.79 1.7E-05 46.3 5.2 35 46-80 211-245 (425)
497 cd00757 ThiF_MoeB_HesA_family 88.2 0.86 1.9E-05 42.1 5.1 34 46-79 20-54 (228)
498 TIGR01505 tartro_sem_red 2-hyd 88.1 0.59 1.3E-05 45.1 4.2 32 49-80 1-32 (291)
499 PRK00258 aroE shikimate 5-dehy 88.0 0.9 2E-05 43.4 5.3 34 46-79 122-156 (278)
500 PRK07060 short chain dehydroge 87.9 1 2.3E-05 41.8 5.7 35 45-79 7-42 (245)
No 1
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=5.9e-44 Score=366.94 Aligned_cols=439 Identities=21% Similarity=0.281 Sum_probs=331.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC-----------CcccccccccCCCcHHHHHHHhCCCCCCcc
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP-----------DDISMQGFWYPFRNIFSLVDELGIKPFTGW 115 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~-----------~~~G~~~~~~~~~~~~~~~~~lg~~~~~~~ 115 (533)
+++|+|||||++||++|+.|+++|++|+|+|+.+++||+ +|.|.|.+++.++++.++++++|+.+...+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~~~ll~~LGl~~~~~~ 154 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNLFRLMKKVGADENLLV 154 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHHHHHHHhcCCcccccc
Confidence 469999999999999999999999999999999999986 567889988888999999999999854333
Q ss_pred ccc-c-eecCCCceecccccccCCCCCCCcccc-hhhhhcCCCHHhhhhcc------hhhHHhhcCCCCchhhhccCCcc
Q 009508 116 MKS-A-QYSEEGLEVEFPIFQDLNQLPTPLGTL-FYTQFSRLPLVDRLTSL------PLMAAVIDFDNTDVAWRKYDSIT 186 (533)
Q Consensus 116 ~~~-~-~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~s 186 (533)
... . ++..++.....+. ...++.++... .+..+..+++.+++... +.+....+++.....|+..+++|
T Consensus 155 ~~~~~~~~~~~g~~~~~~~---~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~~d~~s 231 (569)
T PLN02487 155 KDHTHTFVNKGGDVGELDF---RFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVDPDGAMRDIRDLDDIS 231 (569)
T ss_pred cccceeEEecCCEEeeecc---CCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccCccccccccccccCCc
Confidence 221 1 2222332211110 00122222111 12334556666766542 21111112211224456678899
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcCCcceeeecCCcchhhHHHHHHHHHhcCC
Q 009508 187 ARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGC 266 (533)
Q Consensus 187 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~G~ 266 (533)
+.+|+++.+.+++.++.+|++++...++.+++++|+......+..+. ......++.|++|+..+.|.+++++.|+++|+
T Consensus 232 v~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~~~-~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg 310 (569)
T PLN02487 232 FSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSLFA-TKTEASLLRMLKGSPDVRLSGPIAKYITDRGG 310 (569)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh-hcCCcceeeecCCCchHHHHHHHHHHHHHcCC
Confidence 99999999887889999999999999999999999998888886432 23444668899999887799999999999999
Q ss_pred EEEcCceeeEEEeccC-Cc--eEEEEEe--C--CeeeecCEEEEccChhhHHHhhhhccccCchhHHhhccCcceeeEEE
Q 009508 267 EFLDGRRVTDFIYDEE-RC--CISDVVC--G--KETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSV 339 (533)
Q Consensus 267 ~i~~~~~V~~I~~~~~-~~--~v~~v~~--~--~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v 339 (533)
+|+++++|++|..+.+ ++ +++++.. + ++++.+|.||+|+|++.+.+|+++. +...+...++..+.+.+++.+
T Consensus 311 ~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~-~~~~~~~~~l~~L~~~pi~tv 389 (569)
T PLN02487 311 RFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQ-WREYEFFDNIYKLVGVPVVTV 389 (569)
T ss_pred EEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCch-hhccHHHhHHhcCCCeeEEEE
Confidence 9999999999998741 23 3667766 2 2368899999999999999999886 223455778999999999999
Q ss_pred EEEeccCCCCCCCCc------eeeccCC-----Ccccee-eec--cccccccCCCCCeEEEEEecCCCCCCCCCHHHHHH
Q 009508 340 KLWFDKKVTVPNVSN------ACSGFGD-----SLAWTF-FDL--NKIYDEHKDDSATVIQADFYHANELMPLKDDQVVA 405 (533)
Q Consensus 340 ~l~~~~~~~~~~~~~------~~~~~~~-----~~~~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ei~~ 405 (533)
+++|+.++..+.+.+ .+.+++. ...|.+ ++. ......|.+..++++.+.++.++++.+++++++++
T Consensus 390 ~L~~d~~v~~~~~~~~~r~l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~ 469 (569)
T PLN02487 390 QLRYNGWVTEMQDLELSRQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVE 469 (569)
T ss_pred EEEecccccccccccccccccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHH
Confidence 999999886544211 1333321 223433 232 21111233455788888889899999999999999
Q ss_pred HHHHHHhhhhcCCCCCccccceeeeCCCCccccCCCccccCCCCCCCCCceEEecccccCCCCCchhhHHHHHHHHHHHH
Q 009508 406 KAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANR 485 (533)
Q Consensus 406 ~~~~~l~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~p~~~~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~ 485 (533)
.+.++|.++||...+.++.+..+.+.+++.+.+.||+...+|...|+++|||+||||+.++|| ++||||+.||.+||+.
T Consensus 470 ~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~~~nl~LAGD~t~~~yP-at~EgAv~SG~~AA~~ 548 (569)
T PLN02487 470 KVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSYTKQDYI-DSMEGATLSGRQAAAY 548 (569)
T ss_pred HHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCCCCCEEEeCcccccCCc-chHHHHHHHHHHHHHH
Confidence 999999999999876678888899999999999999988889999999999999999999999 8999999999999999
Q ss_pred HHHHhC
Q 009508 486 VVDYLG 491 (533)
Q Consensus 486 Il~~~g 491 (533)
|+++.+
T Consensus 549 i~~~~~ 554 (569)
T PLN02487 549 ICEAGE 554 (569)
T ss_pred HHHHhh
Confidence 998875
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=100.00 E-value=4.4e-42 Score=351.74 Aligned_cols=433 Identities=20% Similarity=0.296 Sum_probs=316.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC-----------CcccccccccCCCcHHHHHHHhCCCCCCcccc
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP-----------DDISMQGFWYPFRNIFSLVDELGIKPFTGWMK 117 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~-----------~~~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 117 (533)
+|+|||||++||++|+.|+++|++|+|+|+++++||+ +|.|.|.++..++++.++++++|+.+...+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 80 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKVGAEDNLLLKE 80 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHcCCcccccccc
Confidence 5899999999999999999999999999999999997 56788988888899999999999985433322
Q ss_pred c-ceec-CCCceecccccccCCCCCCCcccc-hhhhhcCCCHHhhhhcchhh------HHhhcCCCCchhhhccCCccHH
Q 009508 118 S-AQYS-EEGLEVEFPIFQDLNQLPTPLGTL-FYTQFSRLPLVDRLTSLPLM------AAVIDFDNTDVAWRKYDSITAR 188 (533)
Q Consensus 118 ~-~~~~-~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~s~~ 188 (533)
. ..+. .++.....+. . ..++.++... .+.+...+++.++++..... ....++......|...+++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~--~-~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 157 (474)
T TIGR02732 81 HTHTFVNKGGDIGELDF--R-FATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFA 157 (474)
T ss_pred ceeEEEcCCCccccccc--C-CCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHH
Confidence 1 1122 2222111110 0 0122222111 12334566777766532222 1111222112345566789999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcCCcceeeecCCcchhhHHHHHHHHHhcCCEE
Q 009508 189 ELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 268 (533)
Q Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~G~~i 268 (533)
+|+++.+.++..++.++++++...++.+++++|+..+...++.+.. ......+.+++|+.++.+.+.+.+.|++.|++|
T Consensus 158 ~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~-~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i 236 (474)
T TIGR02732 158 EWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFAA-KTEASKLRMLKGSPDKYLTKPILEYIEARGGKF 236 (474)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-CCCcceeeeecCCcchhHHHHHHHHHHHCCCEE
Confidence 9999998888888999999999999999999999988877665443 344557778888887778888999999999999
Q ss_pred EcCceeeEEEeccC-Cc--eEEEEEeC-C---eeeecCEEEEccChhhHHHhhhhccccCchhHHhhccCcceeeEEEEE
Q 009508 269 LDGRRVTDFIYDEE-RC--CISDVVCG-K---ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKL 341 (533)
Q Consensus 269 ~~~~~V~~I~~~~~-~~--~v~~v~~~-~---~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v~l 341 (533)
+++++|++|..+++ ++ +++++... + +++.+|+||+|+|++.+.+|+++... ..+....+..+.+.++..+++
T Consensus 237 ~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~-~~~~~~~l~~l~~~pi~~v~l 315 (474)
T TIGR02732 237 HLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWR-QFEEFDNIYKLDAVPVATVQL 315 (474)
T ss_pred ECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhh-cCHHHhhHhcCCCCCeEEEEE
Confidence 99999999987531 12 25555553 2 35899999999999999999987422 234556788889899999999
Q ss_pred EeccCCCCCCCCc------eeeccC-----CCcccee-eecccccc-ccC-CCCCeEEEEEecCCCCCCCCCHHHHHHHH
Q 009508 342 WFDKKVTVPNVSN------ACSGFG-----DSLAWTF-FDLNKIYD-EHK-DDSATVIQADFYHANELMPLKDDQVVAKA 407 (533)
Q Consensus 342 ~~~~~~~~~~~~~------~~~~~~-----~~~~~~~-~~~~~~~~-~~~-~~~~~v~~~~~~~~~~~~~~~~~ei~~~~ 407 (533)
+|+.++..+.+.+ .+.+++ ....|.+ ++.....+ +|. +..+.++.+.++.++++.+++++++.+.+
T Consensus 316 ~~~~~v~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 395 (474)
T TIGR02732 316 RYDGWVTELQDLAKRKQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRV 395 (474)
T ss_pred EeccccccccchhhhhcccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHH
Confidence 9998776543211 011111 1112322 22221112 232 23456677777777888889999999999
Q ss_pred HHHHhhhhcCCCCCccccceeeeCCCCccccCCCccccCCCCCCCCCceEEecccccCCCCCchhhHHHHHHHHHHHHHH
Q 009508 408 VSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 487 (533)
Q Consensus 408 ~~~l~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~p~~~~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il 487 (533)
+++|+++||...+.++.+..+++.+++.+.+.||+...+|...++++|||+||||+.+++| ++||+|+.||.+||+.|+
T Consensus 396 ~~~L~~~~p~~~~~~~~~~~v~~~~~a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~p-as~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 396 DKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYI-DSMEGATLSGRQAAAAIL 474 (474)
T ss_pred HHHHHHhCccccCCceeEEEEEEecCceeccCCCCcccCCCCCCCCCCeEEeccccccCch-HHHhHHHHHHHHHHHHhC
Confidence 9999999998766677888899999999999999988899999999999999999999999 899999999999999874
No 3
>PLN02612 phytoene desaturase
Probab=100.00 E-value=2.6e-41 Score=352.35 Aligned_cols=438 Identities=18% Similarity=0.294 Sum_probs=315.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC-----------CcccccccccCCCcHHHHHHHhCCCC
Q 009508 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP-----------DDISMQGFWYPFRNIFSLVDELGIKP 111 (533)
Q Consensus 43 ~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~-----------~~~G~~~~~~~~~~~~~~~~~lg~~~ 111 (533)
.+...++|+|||||++||+||++|+++|++|+|+|+++++||+ +|.|.|.+.+.++++.++++++|+..
T Consensus 89 ~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~elG~~~ 168 (567)
T PLN02612 89 RPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGELGIND 168 (567)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHhCCcc
Confidence 3445689999999999999999999999999999999999997 56788999888999999999999975
Q ss_pred CCccccc-ceec-CC-CceecccccccCCC-CCCCcccch--hhhhcCCCHHhhhhcch-hhHHhhcCCCCchhhhccCC
Q 009508 112 FTGWMKS-AQYS-EE-GLEVEFPIFQDLNQ-LPTPLGTLF--YTQFSRLPLVDRLTSLP-LMAAVIDFDNTDVAWRKYDS 184 (533)
Q Consensus 112 ~~~~~~~-~~~~-~~-g~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 184 (533)
...+... ..+. .+ ...+.. ...+. ++.++.... +.....+++.+++.... ....... ....+..+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~---~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~---~~~~~~~~d~ 242 (567)
T PLN02612 169 RLQWKEHSMIFAMPNKPGEFSR---FDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVG---GQAYVEAQDG 242 (567)
T ss_pred cceecccceEEEecCCCCceee---CcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcc---cchhhhhcCc
Confidence 5444322 1121 11 100000 01111 222222111 11122344555544321 1111111 1122345788
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcCCcceeeecCCcchhhHHHHHHHHHhc
Q 009508 185 ITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTR 264 (533)
Q Consensus 185 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~ 264 (533)
+|+.+|+++.+.++.+.+.++.+++...++.+++++|+...+..+..+. .........++.|+..+.++++|++.++++
T Consensus 243 ~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l-~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~ 321 (567)
T PLN02612 243 LSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFL-QEKHGSKMAFLDGNPPERLCMPIVDHFQSL 321 (567)
T ss_pred CcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHH-hccCCceEeeecCCchHHHHHHHHHHHHhc
Confidence 9999999999999999888999998888889999999988777666542 233345666777776578999999999999
Q ss_pred CCEEEcCceeeEEEeccCCceEEEEEe-CCeeeecCEEEEccChhhHHHhhhhccccCchhHHhhccCcceeeEEEEEEe
Q 009508 265 GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWF 343 (533)
Q Consensus 265 G~~i~~~~~V~~I~~~~~~~~v~~v~~-~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~ 343 (533)
|++|++|++|++|..++ +++++++.+ +++++.+|+||+|+|+..+..+++.... ..+..++++.+.+.++.+++++|
T Consensus 322 G~~I~l~~~V~~I~~~~-~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~-~~~~~~~l~~l~~~~v~~v~l~~ 399 (567)
T PLN02612 322 GGEVRLNSRIKKIELND-DGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWK-EIPYFKKLDKLVGVPVINVHIWF 399 (567)
T ss_pred CCEEEeCCeeeEEEECC-CCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhc-CcHHHHHHHhcCCCCeEEEEEEE
Confidence 99999999999999865 466665665 4568999999999999999888876421 12444566677788899999999
Q ss_pred ccCCCCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhhhhcCCC----
Q 009508 344 DKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFS---- 419 (533)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ei~~~~~~~l~~~~p~~~---- 419 (533)
+++++.+..+. ++.. ......+++.+.....|.+++.+++.+.+....+|..++++++++.++++|+++||+..
T Consensus 400 dr~~~~~~~~~-~~~~-~~~~~~~~d~S~~~~~~~~~~~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~lfp~~~~~~~ 477 (567)
T PLN02612 400 DRKLKNTYDHL-LFSR-SPLLSVYADMSTTCKEYYDPNKSMLELVFAPAEEWISRSDEDIIDATMKELAKLFPDEISADQ 477 (567)
T ss_pred CcccCCCCCce-eecC-CCCceeehhhhhcchhhcCCCCeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHHCCccccccc
Confidence 99986443332 2221 11112334444433445555566776666667788889999999999999999999752
Q ss_pred -CCccccceeeeCCCCccccCCCccccCCCCCCCCCceEEecccccCCCCCchhhHHHHHHHHHHHHHHHHhCC
Q 009508 420 -TATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 492 (533)
Q Consensus 420 -~~~v~~~~~~r~~~~~~~~~pg~~~~~p~~~~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~~~g~ 492 (533)
...+..+.+.+.+.+++.+.|+....+|...+|++||||||||+.++++ ++||||+.||++||++|++.++.
T Consensus 478 ~~~~i~~~~~v~~P~a~~~~~pg~~~~rp~~~tPi~~l~lAGd~t~~~~~-~smeGAv~SG~~AA~~I~~~~~~ 550 (567)
T PLN02612 478 SKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYL-ASMEGAVLSGKLCAQSIVQDYEL 550 (567)
T ss_pred CCceEEEEEEeccCCceEEeCCCCcccCccccCccCCEEEeecceeCCch-hhHHHHHHHHHHHHHHHHHHhcc
Confidence 2345566677788888888888766778888999999999999999998 89999999999999999999875
No 4
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=100.00 E-value=1.2e-38 Score=327.98 Aligned_cols=426 Identities=21% Similarity=0.343 Sum_probs=293.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC-----------CcccccccccCCCcHHHHHHHhCCCCCCcccc
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP-----------DDISMQGFWYPFRNIFSLVDELGIKPFTGWMK 117 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~-----------~~~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~ 117 (533)
+|+|||||++||+||++|+++|++|+|+|+++++||+ +|.|.|.+...++++.++++++|+.....+..
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~lg~~~~~~~~~ 80 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKELNIEDRLQWKS 80 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHcCCccceeecC
Confidence 5899999999999999999999999999999999997 45788888888999999999999875433322
Q ss_pred c-ceecC---CCceecccccccCCCCCCCcccch--hhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCccHHHHH
Q 009508 118 S-AQYSE---EGLEVEFPIFQDLNQLPTPLGTLF--YTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELF 191 (533)
Q Consensus 118 ~-~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l 191 (533)
. ..+.. ++.... ...+.++.++.... +.....++..+++.+...+...... ....+..++++|+.+|+
T Consensus 81 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~l 154 (453)
T TIGR02731 81 HSMIFNQPDKPGTFSR----FDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVR--GQKYVEEQDKYTVTEWL 154 (453)
T ss_pred CceEEecCCCCcceee----ccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhc--CccchhhhccCCHHHHH
Confidence 1 12211 111100 01122222222111 0111234455554433222111100 11233456889999999
Q ss_pred HHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcCCcceeeecCCcchhhHHHHHHHHHhcCCEEEcC
Q 009508 192 KQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDG 271 (533)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~ 271 (533)
++.+.++.+.+.++.+++...++.++.++|+..++..+..+.. ........+..|+....+++++.+.++++|++|++|
T Consensus 155 ~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~-~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~ 233 (453)
T TIGR02731 155 RKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQ-ERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLN 233 (453)
T ss_pred HHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHh-cCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCC
Confidence 9989999988899999999998999999999888777665432 222233344555544678999999999999999999
Q ss_pred ceeeEEEeccCCceEEEEEe-CCe-----eeecCEEEEccChhhHHHhhhhccccCchhHHhhccCcceeeEEEEEEecc
Q 009508 272 RRVTDFIYDEERCCISDVVC-GKE-----TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDK 345 (533)
Q Consensus 272 ~~V~~I~~~~~~~~v~~v~~-~~~-----~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~ 345 (533)
++|++|..++ ++++++|.+ +++ ++.+|.||+|+|+..+.++++... ......+.+..+.+.++.+++++++.
T Consensus 234 ~~V~~I~~~~-~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~-~~~~~~~~~~~~~~~~~~~v~l~~~~ 311 (453)
T TIGR02731 234 SRLKEIVLNE-DGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPW-KQMPFFQKLNGLEGVPVINVHIWFDR 311 (453)
T ss_pred CeeEEEEECC-CCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhh-hcCHHHHHhhcCCCCcEEEEEEEEcc
Confidence 9999998755 466666665 233 789999999999999888886531 11233445666777788999999999
Q ss_pred CCCCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhhhhcCC----CCC
Q 009508 346 KVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDF----STA 421 (533)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ei~~~~~~~l~~~~p~~----~~~ 421 (533)
+++... . .++...... ....+.+.....+.++++.++.+.+.....+..++++++.+.++++|+++||+. ...
T Consensus 312 ~~~~~~-~-~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~~~~~~~~~~~~ 388 (453)
T TIGR02731 312 KLTTVD-H-LLFSRSPLL-SVYADMSETCKEYADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKADSPA 388 (453)
T ss_pred ccCCCC-c-eeeeCCCcc-eeecchhhhChhhcCCCCeEEEEEecChhhhhcCCHHHHHHHHHHHHHHhCCcccCCCCCc
Confidence 876322 1 122211111 111111111112223345666655545566777899999999999999999852 233
Q ss_pred ccccceeeeCCCCccccCCCccccCCCCCCCCCceEEecccccCCCCCchhhHHHHHHHHHHHHHH
Q 009508 422 TVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 487 (533)
Q Consensus 422 ~v~~~~~~r~~~~~~~~~pg~~~~~p~~~~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il 487 (533)
++++..+.+.+++.+.+.||....+|...+|++||||||+|++.+|+ ++||||+.||.+||++|+
T Consensus 389 ~~~~~~~~~~p~a~~~~~pg~~~~~~~~~~p~~~l~~AG~~~a~~~~-g~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 389 KILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYL-ASMEGAVLSGKLCAQAIV 453 (453)
T ss_pred eEEEEEEEECCCceeccCCCChhhCccccCccCCEEEeehhccCccc-ccHHHHHHHHHHHHHHhC
Confidence 46666777888888777888766778888899999999999999999 899999999999999874
No 5
>PRK07233 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=312.11 Aligned_cols=416 Identities=21% Similarity=0.287 Sum_probs=284.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC----------CcccccccccCCCcHHHHHHHhCCCCCCcccc-
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP----------DDISMQGFWYPFRNIFSLVDELGIKPFTGWMK- 117 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~----------~~~G~~~~~~~~~~~~~~~~~lg~~~~~~~~~- 117 (533)
+|||||||++||+||+.|+++|++|+|+|+++++||+ +|.|.|.++..++++.++++++|+.....+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g~~~d~g~~~~~~~~~~~~~l~~~lg~~~~~~~~~~ 80 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHIFKSDEALLELLDELGLEDKLRWRET 80 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCCcchhhhhhhhccccHHHHHHHHHcCCCCceeeccC
Confidence 6999999999999999999999999999999999998 56778888888889999999999874332221
Q ss_pred cceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCccHHHHHHHhCCC
Q 009508 118 SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCS 197 (533)
Q Consensus 118 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~ 197 (533)
...+..++..+. +..... ...+..++..+++........... ...+..++.+|+++|+++. ..
T Consensus 81 ~~~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~l~~~-~~ 143 (434)
T PRK07233 81 KTGYYVDGKLYP---------LGTPLE---LLRFPHLSLIDKFRLGLLTLLARR----IKDWRALDKVPAEEWLRRW-SG 143 (434)
T ss_pred ceEEEECCeEec---------CCCHHH---HHcCCCCCHHHHHHhHHHHHhhhh----cccccccccccHHHHHHHh-cC
Confidence 111111221111 111110 112223344444332211111100 0122345779999999986 46
Q ss_pred HHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcC--CcceeeecCCcchhhHHHHHHHHHhcCCEEEcCceee
Q 009508 198 ERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK--NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVT 275 (533)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~~~V~ 275 (533)
++..+.++.+++...++.+++++++..+...+......... .....+++||+ +.+.+.|.+.+++.|++|++|++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~-~~l~~~l~~~l~~~g~~v~~~~~V~ 222 (434)
T PRK07233 144 EGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGF-ATLIDALAEAIEARGGEIRLGTPVT 222 (434)
T ss_pred HHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCH-HHHHHHHHHHHHhcCceEEeCCCee
Confidence 77778899999999999999999988766555432211111 11255678885 4899999999999999999999999
Q ss_pred EEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhhccccCchhHHhhccCcceeeEEEEEEeccCCCCCCCCce
Q 009508 276 DFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNA 355 (533)
Q Consensus 276 ~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~ 355 (533)
+|+.++ +.++.+..+++++++|+||+|+|+..+.++++..+ ....+.++.+.+.+..++++.++.+... ....
T Consensus 223 ~i~~~~--~~~~~~~~~~~~~~ad~vI~a~p~~~~~~ll~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~ 295 (434)
T PRK07233 223 SVVIDG--GGVTGVEVDGEEEDFDAVISTAPPPILARLVPDLP---ADVLARLRRIDYQGVVCMVLKLRRPLTD--YYWL 295 (434)
T ss_pred EEEEcC--CceEEEEeCCceEECCEEEECCCHHHHHhhcCCCc---HHHHhhhcccCccceEEEEEEecCCCCC--Ccee
Confidence 999876 55555556667899999999999999988885432 1233456777777888888999887632 1111
Q ss_pred ee-ccCCCccceeeeccccccccCCCCCeEEEEE-ecC-CCCCCCCCHHHHHHHHHHHHhhhhcCCCCCccccceeeeCC
Q 009508 356 CS-GFGDSLAWTFFDLNKIYDEHKDDSATVIQAD-FYH-ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFP 432 (533)
Q Consensus 356 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~-~~~~~~~~~~ei~~~~~~~l~~~~p~~~~~~v~~~~~~r~~ 432 (533)
.. ..+..... ++..+...+...+++.+++.+. +.. ..++..++++++.+.++++|++++|++....+++..+.|++
T Consensus 296 ~~~~~~~~~~~-~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~p~~~~~~~~~~~~~r~~ 374 (434)
T PRK07233 296 NINDPGAPFGG-VIEHTNLVPPERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKMFPDFDRDDVRAVRISRAP 374 (434)
T ss_pred eecCCCCCcce-EEEecccCCccccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHhCCCCChhheeeEEEEEec
Confidence 11 10011111 2222222222222334433222 222 23344678899999999999999998765567888889999
Q ss_pred CCccccCCCccccCCCCCCCCCceEEecccccCCCCCchhhHHHHHHHHHHHHHHHHhC
Q 009508 433 KSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 491 (533)
Q Consensus 433 ~~~~~~~pg~~~~~p~~~~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~~~g 491 (533)
++.+.+.||+...++...++.+|||+||++....++ .+|++|+.||++||++|++.+.
T Consensus 375 ~a~~~~~~g~~~~~~~~~~~~~~l~~aG~~~~~~~~-~~~~~Ai~sG~~aA~~i~~~~~ 432 (434)
T PRK07233 375 YAQPIYEPGYLDKIPPYDTPIEGLYLAGMSQIYPED-RSINGSVRAGRRVAREILEDRR 432 (434)
T ss_pred cccccccCchhhcCCCcccCcCCEEEeCCcccCCcc-CchhHHHHHHHHHHHHHhhhhc
Confidence 999998898766777778889999999996544455 6899999999999999998875
No 6
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=100.00 E-value=1.4e-33 Score=288.67 Aligned_cols=404 Identities=25% Similarity=0.310 Sum_probs=279.8
Q ss_pred HHHHHHHHCCCeEEEEcCCCCCCCC------------CcccccccccCCCcHHHHHHHhCCCCCCc-cccc-ceecCCCc
Q 009508 61 GAAHHLSKQGFDVTVLDDGNGFGSP------------DDISMQGFWYPFRNIFSLVDELGIKPFTG-WMKS-AQYSEEGL 126 (533)
Q Consensus 61 ~aA~~L~~~G~~V~vlE~~~~~GG~------------~~~G~~~~~~~~~~~~~~~~~lg~~~~~~-~~~~-~~~~~~g~ 126 (533)
+||+.|+++|++|+|||+++++||+ +|.|.|.+...++++.++++++|++.... +... .++.+++.
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~ 80 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGPRLPLPFYDPGGR 80 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHhCCchhhhcccCCcceecCCCC
Confidence 5899999999999999999999999 57788888888899999999999985432 1111 12223332
Q ss_pred eecccccccCCCCCCCccc-chhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCccHHHHHHHhCCCHHHHHHHH
Q 009508 127 EVEFPIFQDLNQLPTPLGT-LFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFGCSERLYRNVI 205 (533)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~ 205 (533)
..... ...++.+... ..+..+..++..++..+...+...... ....++.+|+.+|+++.+.++.+...++
T Consensus 81 ~~~~~----~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~l~~~~~~~~~~~~~~ 151 (419)
T TIGR03467 81 LSRLR----LSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRT-----RFRALDDTTVGDWLQAAGQSERLIERLW 151 (419)
T ss_pred ceeec----CCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhc-----CccccCCCCHHHHHHHcCCCHHHHHHHH
Confidence 11110 0112222110 011223445555554444333332211 1134578999999999877888988899
Q ss_pred HHHHHhhccCCchhhhHHHHHHHHHHHHHhhcCCcceeeecCCcchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCce
Q 009508 206 GPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC 285 (533)
Q Consensus 206 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~ 285 (533)
.+++...++.+++++|+..+...+............+.+++||++..+.+.|++.+++.|++|++|++|++|+.++ ++.
T Consensus 152 ~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~-~~~ 230 (419)
T TIGR03467 152 EPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANA-GGI 230 (419)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcC-Ccc
Confidence 9999999999999999987766554322222223456778888775566778999988999999999999999886 343
Q ss_pred EEEEEeCCeeeecCEEEEccChhhHHHhhhhccccCchhHHhhccCcceeeEEEEEEeccCCCCCCCCceeeccCCCccc
Q 009508 286 ISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAW 365 (533)
Q Consensus 286 v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~ 365 (533)
.+.+..+++++.||+||+|+|+..+.+++++. ...+.++.+.+.++.++++.++.++|.+.+...+. .....|
T Consensus 231 ~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~-----~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~--~~~~~~ 303 (419)
T TIGR03467 231 RALVLSGGETLPADAVVLAVPPRHAASLLPGE-----DLGALLTALGYSPITTVHLRLDRAVRLPAPMVGLV--GGLAQW 303 (419)
T ss_pred eEEEecCCccccCCEEEEcCCHHHHHHhCCCc-----hHHHHHhhcCCcceEEEEEEeCCCcCCCCCeeeec--CCceeE
Confidence 33344456689999999999999999987652 23345778888888899999999886544322221 122233
Q ss_pred eeeeccccccccCCCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhhhhcCCCCCccccceeeeCCCCccccCCCcccc
Q 009508 366 TFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKY 445 (533)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ei~~~~~~~l~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~ 445 (533)
. ++.... .+..+ ++...+....++..++++++.+.++++|+++||......+.+..+.++.++.+.+.||....
T Consensus 304 ~-~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 377 (419)
T TIGR03467 304 L-FDRGQL----AGEPG-YLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAATPGLNRL 377 (419)
T ss_pred E-EECCcC----CCCCC-EEEEEEecchhhccCCHHHHHHHHHHHHHHhcCccccCCccceEEEEccCCccccCCccccc
Confidence 2 222211 11222 33333344556677889999999999999999975434566777788888877777887555
Q ss_pred CCCCCCCCCceEEecccccCCCCCchhhHHHHHHHHHHHHHHH
Q 009508 446 MMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 488 (533)
Q Consensus 446 ~p~~~~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~ 488 (533)
+|...++.+|||||||+++++++ ++||||+.||.+||++|++
T Consensus 378 ~~~~~~~~~~l~~aGd~~~~~~~-~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 378 RPGARTPWPNLFLAGDWTATGWP-ATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred CCCCCCCcCCEEEecccccCCCc-chHHHHHHHHHHHHHHHhC
Confidence 67666788999999999998888 7999999999999999874
No 7
>PRK07208 hypothetical protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=284.76 Aligned_cols=426 Identities=19% Similarity=0.198 Sum_probs=276.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC----------CcccccccccCCCcHHHHHHHhCCC-CCCc
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP----------DDISMQGFWYPFRNIFSLVDELGIK-PFTG 114 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~----------~~~G~~~~~~~~~~~~~~~~~lg~~-~~~~ 114 (533)
+++||+|||||++||+||+.|+++|++|+|+|+++++||+ +|.|+|.+...++.+.+++++++.. ....
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~g~~~d~G~h~~~~~~~~~~~l~~~l~~~~~~~~ 82 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYKGNRFDIGGHRFFSKSPEVMDLWNEILPDDDFLL 82 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccCCceEccCCceeccCCHHHHHHHHHhcCCCcccc
Confidence 5679999999999999999999999999999999999998 6889998888889999999999863 2111
Q ss_pred ccccceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcch-hhHHhhcCCCCchhhhccCCccHHHHHHH
Q 009508 115 WMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLP-LMAAVIDFDNTDVAWRKYDSITARELFKQ 193 (533)
Q Consensus 115 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 193 (533)
......+..+|..+.+| . .. ...+..++..+...... .+.... -...+++|+++|+.+
T Consensus 83 ~~~~~~~~~~g~~~~~p---------~--~~--~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~s~~e~l~~ 141 (479)
T PRK07208 83 RPRLSRIYYRGKFFDYP---------L--KA--FDALKNLGLWRTAKCGASYLKARL--------RPRKEEDSFEDWVIN 141 (479)
T ss_pred ccccceEEECCEEecCC---------c--ch--hHHHHhCCHhHHHHHHHHHHHHhc--------CCCCCCCCHHHHHHH
Confidence 11111111123221111 1 00 01111222222211111 011000 011357999999997
Q ss_pred hCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHH---------HHHHHHhh----------cC--CcceeeecCCcchh
Q 009508 194 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGI---------LYFIILAH----------QK--NFDLVWCRGTLREK 252 (533)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~---------~~~~~~~~----------~~--~~~~~~~~g~~~~~ 252 (533)
. +.+++.+.++.+++...|+.+++++|+.+.... +....... .. ...+.+++||++ .
T Consensus 142 ~-~g~~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~-~ 219 (479)
T PRK07208 142 R-FGRRLYSTFFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPG-Q 219 (479)
T ss_pred h-hCHHHHHHHHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcc-h
Confidence 3 678999999999999999999999998753321 11111000 00 123456788876 7
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC---C--eeeecCEEEEccChhhHHHhhhhccccCchhHHh
Q 009508 253 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGISTLQELIKNSILCNREEFLK 327 (533)
Q Consensus 253 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~---~--~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~ 327 (533)
|.+.|.+.+++.|++|++|++|++|..++ ++.++.+..+ + .++.||+||+|+|+..+.+++... . .....+.
T Consensus 220 l~~~L~~~l~~~g~~i~~~~~V~~I~~~~-~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~-~-~~~~~~~ 296 (479)
T PRK07208 220 LWETAAEKLEALGGKVVLNAKVVGLHHDG-DGRIAVVVVNDTDGTEETVTADQVISSMPLRELVAALDPP-P-PPEVRAA 296 (479)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEEcC-CcEEEEEEEEcCCCCEEEEEcCEEEECCCHHHHHHhcCCC-C-CHHHHHH
Confidence 99999999999999999999999999886 4544444432 3 268999999999999988887632 1 1223344
Q ss_pred hccCcceeeEEEEEEeccCCCCCCCCceeeccCCCccceeeeccccccccCCCCC-eEEEEEe--cCCCCCCCCCHHHHH
Q 009508 328 VLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSA-TVIQADF--YHANELMPLKDDQVV 404 (533)
Q Consensus 328 ~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~~~~~~~ei~ 404 (533)
+..+.+.+..++++.++.+...+..+..+.+..... ..........+...+.+. ..+...+ +...+...++++++.
T Consensus 297 ~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~~~p~g~~~~l~~~~~~~~~~~~~~~~deel~ 375 (479)
T PRK07208 297 AAGLRYRDFITVGLLVKELNLFPDNWIYIHDPDVKV-GRLQNFNNWSPYLVPDGRDTWLGLEYFCFEGDDLWNMSDEDLI 375 (479)
T ss_pred HhCCCcceeEEEEEEecCCCCCCCceEEecCCCCcc-ceecccccCCcccCCCCCceEEEEEEEccCCCccccCCHHHHH
Confidence 677888888888999987754332221111111000 001111111222223333 3333323 233455678899999
Q ss_pred HHHHHHHhhhhcCCCCCccccceeeeCCCCccccCCCccccCCC---CCCCCCceEEecccccCCCCCchhhHHHHHHHH
Q 009508 405 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMR---GFTSFPNLFMAGDWITTRHGSWSQERSYVTGLE 481 (533)
Q Consensus 405 ~~~~~~l~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~p~---~~~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~ 481 (533)
+.++++|.++.+ +.+..+...++.++++++|.+.+++....+. ...+.+||++||++....+ .+|++|+.||.+
T Consensus 376 ~~~~~~L~~l~~-~~~~~~~~~~v~r~~~a~P~y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~--~~~d~a~~sg~~ 452 (479)
T PRK07208 376 ALAIQELARLGL-IRPADVEDGFVVRVPKAYPVYDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRY--NNQDHSMLTAML 452 (479)
T ss_pred HHHHHHHHHcCC-CChhheeEEEEEEecCcccCCCchHHHHHHHHHHHHHhcCCceeecccccccc--CChhHHHHHHHH
Confidence 999999999743 4355788888999999999999887554332 2356799999999875444 589999999999
Q ss_pred HHHHHHHHhCCCCCcccccCCCC
Q 009508 482 AANRVVDYLGDGSFSKIIPVEED 504 (533)
Q Consensus 482 aA~~Il~~~g~~~~~~~~~~~~~ 504 (533)
+|+.|++.. .+.++.|+.-|
T Consensus 453 ~a~~i~~~~---~~~~~~~~~~~ 472 (479)
T PRK07208 453 AVENIIAGE---TKHDIWQVNTE 472 (479)
T ss_pred HHHHHhcCC---ccCCceEeccc
Confidence 999998885 33346665443
No 8
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=100.00 E-value=5.6e-33 Score=273.66 Aligned_cols=405 Identities=20% Similarity=0.248 Sum_probs=278.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCCCCC----------CcccccccccCCCcHHHHHHHhCCCCCCcc
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQG--FDVTVLDDGNGFGSP----------DDISMQGFWYPFRNIFSLVDELGIKPFTGW 115 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G--~~V~vlE~~~~~GG~----------~~~G~~~~~~~~~~~~~~~~~lg~~~~~~~ 115 (533)
++|+|||||++||+|||+|+|++ .+|+|||+++++||. +|.|+|.|......+.++++++|++....|
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~~~~~l~li~eLGled~l~~ 80 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLARKEEILDLIKELGLEDKLLW 80 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeCCEEEeechhheecchHHHHHHHHHhCcHHhhcc
Confidence 47999999999999999999999 999999999999999 688998888766788999999999976665
Q ss_pred cc--cceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCccHHHHHHH
Q 009508 116 MK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQ 193 (533)
Q Consensus 116 ~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 193 (533)
+. ..++..+|..+..|... ...++.... + ........+.. +.. .+.+...++.++++|+++
T Consensus 81 ~~~~~~~i~~~gkl~p~P~~~-i~~ip~~~~----------~--~~~~~~~~~~~---~~~-~~~~~~~~d~sv~~f~r~ 143 (444)
T COG1232 81 NSTARKYIYYDGKLHPIPTPT-ILGIPLLLL----------S--SEAGLARALQE---FIR-PKSWEPKQDISVGEFIRR 143 (444)
T ss_pred CCcccceEeeCCcEEECCccc-eeecCCccc----------c--chhHHHHHHHh---hhc-ccCCCCCCCcCHHHHHHH
Confidence 42 23344455444433211 111111111 0 00111111111 110 123456688999999997
Q ss_pred hCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcCC----------------cceeeecCCcchhhHHHH
Q 009508 194 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKN----------------FDLVWCRGTLREKIFEPW 257 (533)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~----------------~~~~~~~g~~~~~l~~~l 257 (533)
. +++++++.++.+++...|+.+.+++|+......+.......... ..+.+.+||++ .|.+++
T Consensus 144 ~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~-~l~~al 221 (444)
T COG1232 144 R-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQ-SLIEAL 221 (444)
T ss_pred H-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHH-HHHHHH
Confidence 4 67999999999999999999999999984444333222211111 13455678865 888899
Q ss_pred HHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhhccccCchhHHhhccCcceeeE
Q 009508 258 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVV 337 (533)
Q Consensus 258 ~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~ 337 (533)
.+.++.. |+++++|++|..+. .+ ...+..+++.++||.||+|+|++.+.+++++. ........+.+.+.+
T Consensus 222 ~~~l~~~---i~~~~~V~~i~~~~-~~-~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~-----~~~~~~~~~~~~s~~ 291 (444)
T COG1232 222 AEKLEAK---IRTGTEVTKIDKKG-AG-KTIVDVGGEKITADGVISTAPLPELARLLGDE-----AVSKAAKELQYTSVV 291 (444)
T ss_pred HHHhhhc---eeecceeeEEEEcC-Cc-cEEEEcCCceEEcceEEEcCCHHHHHHHcCCc-----chhhhhhhccccceE
Confidence 8877654 99999999999985 23 34456667789999999999999999999883 233456777777777
Q ss_pred EEEEEeccCC--CCCCCCceeeccCCC-ccceeeeccccccccCCCCCeEEEEEecCC--CCCCCCCHHHHHHHHHHHHh
Q 009508 338 SVKLWFDKKV--TVPNVSNACSGFGDS-LAWTFFDLNKIYDEHKDDSATVIQADFYHA--NELMPLKDDQVVAKAVSYLS 412 (533)
Q Consensus 338 ~v~l~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~ei~~~~~~~l~ 412 (533)
.+.+.++.+. ..+..+..++.-... .....++ ++.-+...+.+.+++.+.++.. +....+++||+++.++++|.
T Consensus 292 ~vv~~~~~~~~~~~~~~~g~~iad~~~~~~a~~~~-S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~~~~l~~L~ 370 (444)
T COG1232 292 TVVVGLDEKDNPALPDGYGLLIADDDPYILAITFH-SNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELVAAVLDDLK 370 (444)
T ss_pred EEEEEeccccccCCCCceEEEEecCCCcceeEEEe-cccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHHHHHHHHHH
Confidence 7778887762 223333333322222 2222232 2222223334566666555543 34556789999999999999
Q ss_pred hhhcCCCCCccccceeeeCCCCccccCCCccccCCCCCC----CCCceEEecccccCCCCCchhhHHHHHHHHHHHHHHH
Q 009508 413 KCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGFT----SFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 488 (533)
Q Consensus 413 ~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~p~~~~----~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~ 488 (533)
++++...+ ..+..+.||++++|.|.+|+...+...+. -.+||+.+|.|... . ++..++.+|..||+++++
T Consensus 371 ~~~~~~~~--~~~~~v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~g--~--g~~d~I~~g~~aa~~l~~ 444 (444)
T COG1232 371 KLGGINGD--PVFVEVTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGEG--V--GLPDCIAAGKEAAEQLLS 444 (444)
T ss_pred HHcCcCcc--hhheeeeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCCC--C--CchHHHHHHHHHHHHhhC
Confidence 99976543 33888999999999999998665443322 23899999999953 3 689999999999998863
No 9
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=100.00 E-value=1.2e-32 Score=284.40 Aligned_cols=411 Identities=18% Similarity=0.229 Sum_probs=262.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCCCCC----------CcccccccccCCCcHHHHHHHhCCCCCCcc
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQG--FDVTVLDDGNGFGSP----------DDISMQGFWYPFRNIFSLVDELGIKPFTGW 115 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G--~~V~vlE~~~~~GG~----------~~~G~~~~~~~~~~~~~~~~~lg~~~~~~~ 115 (533)
++|+|||||++||+||+.|+++| ++|+|+|+++++||+ +|.|+|.+...++++.++++++|+......
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~lgl~~~~~~ 80 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDGFPIELGPESFLARKPSAPALVKELGLEDELVA 80 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeCCeEEecChHHhcCCcHHHHHHHHHcCCccceec
Confidence 47999999999999999999988 899999999999999 688998888778889999999998743221
Q ss_pred c--ccceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCccHHHHHHH
Q 009508 116 M--KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQ 193 (533)
Q Consensus 116 ~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~ 193 (533)
. ....+..+|..+..+.. ....++...... .....++..+++.. ...+ ....+...+++|+.+|+++
T Consensus 81 ~~~~~~~~~~~g~~~~~p~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~s~~e~l~~ 149 (451)
T PRK11883 81 NTTGQSYIYVNGKLHPIPPG-TVMGIPTSIAPF--LFAGLVSPIGKLRA------AADL--RPPRWKPGQDQSVGAFFRR 149 (451)
T ss_pred CCCCcceEEECCeEEECCCC-CeeccCCCchhh--hcCCCCCHHHHHHh------hCcc--cCCCCCCCCCcCHHHHHHH
Confidence 1 11222233332222110 000111100000 00111221122111 1111 0111233567899999987
Q ss_pred hCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHh----------h-c-----CCcceeeecCCcchhhHHHH
Q 009508 194 FGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA----------H-Q-----KNFDLVWCRGTLREKIFEPW 257 (533)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~----------~-~-----~~~~~~~~~g~~~~~l~~~l 257 (533)
.+++.+.+.++.+++...++.+++++++......+..+... . . .......++||++ .+.+.+
T Consensus 150 -~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-~l~~~l 227 (451)
T PRK11883 150 -RFGDEVVENLIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQ-SLIEAL 227 (451)
T ss_pred -hccHHHHHHHHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHH-HHHHHH
Confidence 47788989999999999999999999876544333222110 0 0 0112234567764 787777
Q ss_pred HHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhhccccCchhHHhhccCcceeeE
Q 009508 258 MDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVV 337 (533)
Q Consensus 258 ~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~ 337 (533)
.+.+.+. +|++|++|++|+.++ +.+.....+++++.||+||+|+|+..+.+++... +..+.++.+.+.+..
T Consensus 228 ~~~l~~~--~i~~~~~V~~i~~~~--~~~~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~-----~~~~~~~~~~~~~~~ 298 (451)
T PRK11883 228 EEKLPAG--TIHKGTPVTKIDKSG--DGYEIVLSNGGEIEADAVIVAVPHPVLPSLFVAP-----PAFALFKTIPSTSVA 298 (451)
T ss_pred HHhCcCC--eEEeCCEEEEEEEcC--CeEEEEECCCCEEEcCEEEECCCHHHHHHhccCh-----hHHHHHhCCCCCceE
Confidence 7766433 899999999999876 3332223355689999999999999999886542 233457788888888
Q ss_pred EEEEEeccCC-CCCCCCceeeccCCCc--cceeeeccccccccCCCCCeEEEEEecC--CCCCCCCCHHHHHHHHHHHHh
Q 009508 338 SVKLWFDKKV-TVPNVSNACSGFGDSL--AWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLS 412 (533)
Q Consensus 338 ~v~l~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~ei~~~~~~~l~ 412 (533)
++++.|+.++ +.+..+..++..+... ....++ +...+...+.+..++...+.. .....+.+++++.+.++++|+
T Consensus 299 ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 377 (451)
T PRK11883 299 TVALAFPESATNLPDGTGFLVARNSDYTITACTWT-SKKWPHTTPEGKVLLRLYVGRPGDEAVVDATDEELVAFVLADLS 377 (451)
T ss_pred EEEEEeccccCCCCCceEEEecCCCCCcEEEEEeE-cCcCCCCCCCCcEEEEEecCCCCCchhccCCHHHHHHHHHHHHH
Confidence 9999999875 2222233333322111 122232 212222233334444332221 123456789999999999999
Q ss_pred hhhcCCCCCccccceeeeCCCCccccCCCccccC----CCCCCCCCceEEecccccCCCCCchhhHHHHHHHHHHHHHHH
Q 009508 413 KCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM----MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 488 (533)
Q Consensus 413 ~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~----p~~~~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~ 488 (533)
++++. . ..+....+.+|.++++.+.+++.... +.... .+|||+||+|+. + .++++|+.||+++|++|++
T Consensus 378 ~~~g~-~-~~~~~~~~~rw~~a~p~~~~~~~~~~~~l~~~l~~-~~~l~~aG~~~~---g-~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 378 KVMGI-T-GDPEFTIVQRWKEAMPQYGVGHIERVAELRAGLPH-YPGLYVAGASFE---G-VGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred HHhCC-C-CCceEEEEeecCccCCCCCccHHHHHHHHHHhhhh-CCCEEEECcccC---C-ccHHHHHHHHHHHHHHHHh
Confidence 99963 2 24557788899999999988864322 12222 679999999985 2 5799999999999999975
No 10
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=100.00 E-value=1.9e-32 Score=282.77 Aligned_cols=413 Identities=14% Similarity=0.179 Sum_probs=264.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCCCCC----------CcccccccccCCCcHHHHHHHhCCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQ------GFDVTVLDDGNGFGSP----------DDISMQGFWYPFRNIFSLVDELGIKP 111 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~------G~~V~vlE~~~~~GG~----------~~~G~~~~~~~~~~~~~~~~~lg~~~ 111 (533)
++|+|||||++||+||++|+++ |++|+|||+++++||+ +|.|++++...++++.++++++|++.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~~e~G~~~i~~~~~~~~~l~~~lgl~~ 81 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFIMESGADSIVARNEHVMPLVKDLNLEE 81 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEEEecCcHHHhcCCHHHHHHHHHcCCcc
Confidence 4799999999999999999986 3799999999999999 68899998887888999999999985
Q ss_pred CCcccc--cceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCccHHH
Q 009508 112 FTGWMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARE 189 (533)
Q Consensus 112 ~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 189 (533)
...+.. ..++..++.....+. .....++..... ......++...++.... ..... . ....+++|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~---~~~~~---~--~~~~~~~sv~~ 150 (463)
T PRK12416 82 EMVYNETGISYIYSDNTLHPIPS-DTIFGIPMSVES--LFSSTLVSTKGKIVALK---DFITK---N--KEFTKDTSLAL 150 (463)
T ss_pred ceecCCCCceEEEECCeEEECCC-CCeecCCCChHH--hhcCCcCCHHHHHHhhh---hhccC---C--CCCCCCCCHHH
Confidence 432221 222222222211111 011111111110 01111222222222111 11110 0 01246789999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhh----------------cCCcceeeecCCcchhh
Q 009508 190 LFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH----------------QKNFDLVWCRGTLREKI 253 (533)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~----------------~~~~~~~~~~g~~~~~l 253 (533)
|+++. ++++..+.++.+++...++.++.++++......+..+.... .....+.+++||++ .|
T Consensus 151 ~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~l 228 (463)
T PRK12416 151 FLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLS-TI 228 (463)
T ss_pred HHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHH-HH
Confidence 99974 67888899999999888999999998764443332221100 11122445678865 78
Q ss_pred HHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe-CCeeeecCEEEEccChhhHHHhhhhccccCchhHHhhccCc
Q 009508 254 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLA 332 (533)
Q Consensus 254 ~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~-~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~ 332 (533)
+++|++.+++ ++|++|++|++|+.++ +.+ .|++ +++++.||+||+|+|+..+.+++.+.. ....+..+.
T Consensus 229 ~~~l~~~l~~--~~i~~~~~V~~I~~~~--~~~-~v~~~~g~~~~ad~VI~a~p~~~~~~ll~~~~-----l~~~~~~~~ 298 (463)
T PRK12416 229 IDRLEEVLTE--TVVKKGAVTTAVSKQG--DRY-EISFANHESIQADYVVLAAPHDIAETLLQSNE-----LNEQFHTFK 298 (463)
T ss_pred HHHHHHhccc--ccEEcCCEEEEEEEcC--CEE-EEEECCCCEEEeCEEEECCCHHHHHhhcCCcc-----hhHHHhcCC
Confidence 8999887754 6899999999999876 433 3444 445789999999999999988886532 223467777
Q ss_pred ceeeEEEEEEeccCCCC-C-CCCceeeccCCCc--cceeeeccccccccCCCCCeEEEEEecC-----CCCCCCCCHHHH
Q 009508 333 SIDVVSVKLWFDKKVTV-P-NVSNACSGFGDSL--AWTFFDLNKIYDEHKDDSATVIQADFYH-----ANELMPLKDDQV 403 (533)
Q Consensus 333 ~~~~~~v~l~~~~~~~~-~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~ei 403 (533)
+.++.++++.|+.+.+. + ...+.+....+.. ....+. ++..+... ++..++...+.+ ...+.+++++++
T Consensus 299 ~~~~~~v~l~~~~~~~~~~~~g~G~l~~~~~~~~~~~~~~~-s~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~dee~ 376 (463)
T PRK12416 299 NSSLISIYLGFDILDEQLPADGTGFIVTENSDLHCDACTWT-SRKWKHTS-GKQKLLVRMFYKSTNPVYETIKNYSEEEL 376 (463)
T ss_pred CCceEEEEEEechhhcCCCCCceEEEeeCCCCCeEEEEEee-cCCCCCcC-CCCeEEEEEEeCCCCCCchhhhcCCHHHH
Confidence 78888999999865432 2 2222222211111 001111 11111111 234444333332 123556789999
Q ss_pred HHHHHHHHhhhhcCCCCCccccceeeeCCCCccccCCCccccC----CCCCCCCCceEEecccccCCCCCchhhHHHHHH
Q 009508 404 VAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM----MRGFTSFPNLFMAGDWITTRHGSWSQERSYVTG 479 (533)
Q Consensus 404 ~~~~~~~l~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~----p~~~~~~~~l~~aG~~~~~g~~~~~iegA~~SG 479 (533)
.+.++++|+++|+. . .+++...+.+|.++.|.+.+|+...+ +....+.+||++||++... .+|++|+.||
T Consensus 377 ~~~~~~~L~~~lG~-~-~~p~~~~v~~W~~a~P~y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~g----~~i~~ai~sg 450 (463)
T PRK12416 377 VRVALYDIEKSLGI-K-GEPEVVEVTNWKDLMPKYHLEHNQAVQSLQEKMMNLYPNIYLAGASYYG----VGIGACIGNG 450 (463)
T ss_pred HHHHHHHHHHHhCC-C-CCceEEEEEEccccCCCcCcCHHHHHHHHHHHHHhhCCCeEEecccccc----ccHHHHHHHH
Confidence 99999999999963 3 35677889999999999888853221 1122345899999999863 4799999999
Q ss_pred HHHHHHHHHHhC
Q 009508 480 LEAANRVVDYLG 491 (533)
Q Consensus 480 ~~aA~~Il~~~g 491 (533)
+++|++|++.+.
T Consensus 451 ~~aA~~i~~~~~ 462 (463)
T PRK12416 451 KNTANEIIATLN 462 (463)
T ss_pred HHHHHHHHHHhh
Confidence 999999998753
No 11
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.5e-34 Score=277.40 Aligned_cols=440 Identities=23% Similarity=0.309 Sum_probs=308.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC-----------CcccccccccCCCcHHHHHHHhCCCCCCccc
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP-----------DDISMQGFWYPFRNIFSLVDELGIKPFTGWM 116 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~-----------~~~G~~~~~~~~~~~~~~~~~lg~~~~~~~~ 116 (533)
++|+|+|||+|||+||++|+++|++|+|+|+++++||+ .+.|.|.|++.|.++++++++++......+.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~~~~~~~~~~ 80 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKELPIEDRLQLR 80 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhCCchheeehH
Confidence 58999999999999999999999999999999999999 5788999999999999999999988544443
Q ss_pred ccc-eecCCCceecccccccCCCCCCCcccch---hhhhcCCCHHhhhhcchhhHHhhcCCC-CchhhhccCCccHHHHH
Q 009508 117 KSA-QYSEEGLEVEFPIFQDLNQLPTPLGTLF---YTQFSRLPLVDRLTSLPLMAAVIDFDN-TDVAWRKYDSITARELF 191 (533)
Q Consensus 117 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~l 191 (533)
... .+...+ -.....++..+...+..... +...+.++..+++.+ ..+...... ....++.+++.|+.+|+
T Consensus 81 ~~~~~~~~~~--~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~~~~~~~~~---~~~l~~~~~g~~~~~~eld~~s~~d~l 155 (485)
T COG3349 81 EHTKTFVGSG--TRPGAIGRFARPDAPQPTNGLKAFLRLPQLPRREKIRF---VLRLGDAPIGADRSLRELDKISFADWL 155 (485)
T ss_pred hhhhhhcccC--CCCCcccccccCCCCCcchhhhhhhhccccCHHHHhHH---hhccccccchhHHHHHHHhcccHHHHH
Confidence 321 110000 00011111222211111111 122334444444332 111111111 24557889999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcCCcceeeecCCcchhhHHHHHHHHHhcCCEEEcC
Q 009508 192 KQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDG 271 (533)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~ 271 (533)
++.+.....+...|.++.....+..++++++......+..+............++|+..+.+...+.+.+++.|.+++.+
T Consensus 156 ~~~g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~ 235 (485)
T COG3349 156 KEKGAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHAD 235 (485)
T ss_pred HHhCCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeecc
Confidence 99998888989999999999999999999998888777777666544455556778888899999999999999999999
Q ss_pred ceeeEEEeccC--CceEEEEEeCCe---eeecCEEEEccChhhHHHhhhhccccCchhHHhhccCcceeeEEEEEEeccC
Q 009508 272 RRVTDFIYDEE--RCCISDVVCGKE---TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK 346 (533)
Q Consensus 272 ~~V~~I~~~~~--~~~v~~v~~~~~---~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~ 346 (533)
.+|+.|..+.. ...++++...+. .+.++.++.+.+.......++.. +........+..+...++.+++++++..
T Consensus 236 ~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~v~~~~~~~ps~-W~~~~~f~~ly~l~~~p~~~~~l~~~~~ 314 (485)
T COG3349 236 YPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFAVQRFKRDLPSE-WPKWSNFDGLYGLRLVPVITLHLRFDGW 314 (485)
T ss_pred ceeeeeeccccccccceEeeeecCcceEeeehhhhhcccccchHhhcCccc-ccccccccccccccccceeEEEEeecCc
Confidence 99999988752 234556655553 34556666666666555555543 2223455678888889999999999975
Q ss_pred CCCCCCCceeeccC------CCccceeeeccccccccCC-CCCeEEEEEecCCCCCCCCCHHHHHHHHHHHHhhhhcCCC
Q 009508 347 VTVPNVSNACSGFG------DSLAWTFFDLNKIYDEHKD-DSATVIQADFYHANELMPLKDDQVVAKAVSYLSKCIKDFS 419 (533)
Q Consensus 347 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~ei~~~~~~~l~~~~p~~~ 419 (533)
.+........++.+ ......+++.....+.|.. +.+..+.....+...+....++++.....+++...+|...
T Consensus 315 ~~~~~~~~~~~~~dn~~~s~~~l~~~~ad~~~~~~~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~ 394 (485)
T COG3349 315 VTELTDRNQQFGIDNLLWSDDTLGGVVADLALTSPDYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLA 394 (485)
T ss_pred cccccccchhhhhhccccccccCCceeeeccccchhhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCchh
Confidence 54322211111111 1122233333333333332 2334444445556677778889999999999999999876
Q ss_pred CCccccceeeeCCCCccccCCCccccCCCCCCCCCceEEecccccCCCCCchhhHHHHHHHHHHHHHHHHhCCCCC
Q 009508 420 TATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSF 495 (533)
Q Consensus 420 ~~~v~~~~~~r~~~~~~~~~pg~~~~~p~~~~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~~~g~~~~ 495 (533)
.++ .+..+.+-..+++...||....+|...++++|++++|||+...+. ++||+|..||.+||+.|++..+....
T Consensus 395 ~a~-~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N~~laGd~~~~~~~-~smE~A~~sGl~AA~~v~~~~~~~~~ 468 (485)
T COG3349 395 EAK-LKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYL-GSMEGATLSGLLAANAILDNLGHHAP 468 (485)
T ss_pred ccc-ccccceeccccccccCCCccccCCCCCCCccchhhccceeecCCc-CccchhhhhHHHHHHHHHHhhhhcCc
Confidence 655 566667788899999999999999999999999999999987644 79999999999999999998875443
No 12
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=100.00 E-value=1.6e-32 Score=283.90 Aligned_cols=407 Identities=15% Similarity=0.193 Sum_probs=268.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCeEEEEcCCCCCCCC----------CcccccccccCCCcHHHHHHHhCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQ----GFDVTVLDDGNGFGSP----------DDISMQGFWYPFRNIFSLVDELGIKPF 112 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~----G~~V~vlE~~~~~GG~----------~~~G~~~~~~~~~~~~~~~~~lg~~~~ 112 (533)
++||+|||||++||+||++|+++ |++|+|+|+++++||+ +|.|+|.+...++++.++++++|+...
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~g~~~e~G~~~~~~~~~~~~~l~~~lgl~~~ 81 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAPDLVKDLGLEHV 81 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeCCEEEecCccccccCChHHHHHHHHcCCCcc
Confidence 46999999999999999999999 9999999999999999 688999999888889999999998754
Q ss_pred Ccc--cccce-ecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCccHHH
Q 009508 113 TGW--MKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARE 189 (533)
Q Consensus 113 ~~~--~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 189 (533)
..+ ....+ +..+|..... |..... +.....+++.+++.... .. +.. .....++|+.+
T Consensus 82 ~~~~~~~~~~~~~~~g~~~~~---------p~~~~~--~~~~~~~~~~~~~~~~~---~~--~~~----~~~~~d~s~~e 141 (462)
T TIGR00562 82 LVSDATGQRYVLVNRGKLMPV---------PTKIAP--FVKTGLFSLGGKLRAGM---DF--IRP----ASPGKDESVEE 141 (462)
T ss_pred cccCCCCceEEEECCCceecC---------CCChHH--HhcCCCCCchhhHHhhh---hh--ccC----CCCCCCcCHHH
Confidence 322 11112 2221322211 111100 01111122222222110 00 000 01223589999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHh----------hc--C------------Ccceeee
Q 009508 190 LFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA----------HQ--K------------NFDLVWC 245 (533)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~----------~~--~------------~~~~~~~ 245 (533)
|+++. +++++.+.++.+++...++.+++++++......++..... .. . ......+
T Consensus 142 ~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (462)
T TIGR00562 142 FVRRR-FGDEVVENLIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTL 220 (462)
T ss_pred HHHHh-cCHHHHHHHHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEec
Confidence 99975 6788889999999999999999999987655444322110 00 0 0002224
Q ss_pred cCCcchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC-CeeeecCEEEEccChhhHHHhhhhccccCchh
Q 009508 246 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREE 324 (533)
Q Consensus 246 ~g~~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~-~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~ 324 (533)
.||++ .|.+.+++.+. .++|++|++|++|..++ ++ + .|+++ ++++.||+||+|+|+..+..++++.+ ...
T Consensus 221 ~gG~~-~l~~~l~~~l~--~~~i~~~~~V~~I~~~~-~~-~-~v~~~~g~~~~ad~VI~t~P~~~~~~ll~~~~---~~~ 291 (462)
T TIGR00562 221 ATGLE-TLPEEIEKRLK--LTKVYKGTKVTKLSHRG-SN-Y-TLELDNGVTVETDSVVVTAPHKAAAGLLSELS---NSA 291 (462)
T ss_pred chhHH-HHHHHHHHHhc--cCeEEcCCeEEEEEecC-Cc-E-EEEECCCcEEEcCEEEECCCHHHHHHHhcccC---HHH
Confidence 56653 67777776664 27899999999999876 33 2 34443 45899999999999999999987532 234
Q ss_pred HHhhccCcceeeEEEEEEeccCCCCCC--CCceeeccCC---CccceeeeccccccccCCCCCeEEEEEecC--CCCCCC
Q 009508 325 FLKVLNLASIDVVSVKLWFDKKVTVPN--VSNACSGFGD---SLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMP 397 (533)
Q Consensus 325 ~~~~~~l~~~~~~~v~l~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~ 397 (533)
.+.+..+.+.+..++.+.|+.+.+... .+..+...++ ...+ .++.+ ..+...+.+..++...+.+ ...+.+
T Consensus 292 ~~~l~~l~~~~~~~v~l~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-i~~s~-~~p~~~p~g~~~l~~~~~g~~~~~~~~ 369 (462)
T TIGR00562 292 SSHLDKIHSPPVANVNLGFPEGSVDGELEGFGFLISRSSKFAILGC-IFTSK-LFPNRAPPGKTLLTAYIGGATDESIVD 369 (462)
T ss_pred HHHHhcCCCCceEEEEEEEchHHcCCCCCceEEEccCCCCCceEEE-EEEcc-ccCCcCCCCcEEEEEEeCCCCCccccC
Confidence 456788899999999999987654321 2112211111 1122 23322 2223333344444332222 245567
Q ss_pred CCHHHHHHHHHHHHhhhhcCCCCCccccceeeeCCCCccccCCCccccCCCC----CCCCCceEEecccccCCCCCchhh
Q 009508 398 LKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG----FTSFPNLFMAGDWITTRHGSWSQE 473 (533)
Q Consensus 398 ~~~~ei~~~~~~~l~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~p~~----~~~~~~l~~aG~~~~~g~~~~~ie 473 (533)
++++++.+.++++|.++++ +.. .+.+..+.+|++++|.+.+|+...++.. ..+.+||++||+|... .+|+
T Consensus 370 ~~~ee~~~~v~~~L~~~~g-i~~-~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g----~~i~ 443 (462)
T TIGR00562 370 LSENEIINIVLRDLKKVLN-INN-EPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEG----VGIP 443 (462)
T ss_pred CCHHHHHHHHHHHHHHHhC-CCC-CCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCC----CcHH
Confidence 8899999999999999996 332 4677889999999999999975444322 2345799999999852 4799
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 009508 474 RSYVTGLEAANRVVDYLG 491 (533)
Q Consensus 474 gA~~SG~~aA~~Il~~~g 491 (533)
+|+.||+++|+.|++.+-
T Consensus 444 ~~i~sg~~~a~~~~~~~~ 461 (462)
T TIGR00562 444 DCIDQGKAAASDVLTFLF 461 (462)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999988753
No 13
>PLN02576 protoporphyrinogen oxidase
Probab=100.00 E-value=1.3e-31 Score=279.25 Aligned_cols=414 Identities=15% Similarity=0.204 Sum_probs=265.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEcCCCCCCCC----------CcccccccccCCCcHHHHHHHhCCCCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQ-GFDVTVLDDGNGFGSP----------DDISMQGFWYPFRNIFSLVDELGIKPFT 113 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~-G~~V~vlE~~~~~GG~----------~~~G~~~~~~~~~~~~~~~~~lg~~~~~ 113 (533)
..++||+|||||++||+||++|+++ |++|+|+|+++++||+ +|.|+|.+....+.+..+++. |+....
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~g~~~d~G~~~~~~~~~~~~~l~~~-gl~~~~ 88 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSEDGFIWEEGPNSFQPSDPELTSAVDS-GLRDDL 88 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccCCeEEecCCchhccCcHHHHHHHHc-CChhhe
Confidence 4567999999999999999999999 9999999999999999 578888887766777777766 776432
Q ss_pred cccc---cceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCccHHHH
Q 009508 114 GWMK---SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITAREL 190 (533)
Q Consensus 114 ~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 190 (533)
.+.. ..++..+|.....| ..... ......++..+++.... ....+... ....+++|+++|
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~p---------~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~sv~~~ 151 (496)
T PLN02576 89 VFPDPQAPRYVVWNGKLRPLP---------SNPID--LPTFDLLSAPGKIRAGL---GAFGWKRP---PPPGREESVGEF 151 (496)
T ss_pred ecCCCCceEEEEECCEEEEcC---------CChHH--hcCcCcCChhHHHHHhH---HHhhccCC---CCCCCCCcHHHH
Confidence 2211 11222233322211 10000 01112233333332211 11111000 112467899999
Q ss_pred HHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHh----------h-c------------------CCcc
Q 009508 191 FKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA----------H-Q------------------KNFD 241 (533)
Q Consensus 191 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~----------~-~------------------~~~~ 241 (533)
+++. ++++.++.++.+++...++.++.++|+......+..+... . . ....
T Consensus 152 l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (496)
T PLN02576 152 VRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQT 230 (496)
T ss_pred HHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCe
Confidence 9985 7899999999999999999999999998665544332100 0 0 0011
Q ss_pred eeeecCCcchhhHHHHHHHHHhcC-CEEEcCceeeEEEeccCCc-eEEEEEeC-C-eeeecCEEEEccChhhHHHhhhhc
Q 009508 242 LVWCRGTLREKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERC-CISDVVCG-K-ETYSAGAVVLAVGISTLQELIKNS 317 (533)
Q Consensus 242 ~~~~~g~~~~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~~-~v~~v~~~-~-~~~~ad~VV~a~~~~~~~~ll~~~ 317 (533)
....+||++ .|++.|++.+ + .+|++|++|++|+.++ ++ ..+.+..+ + .+++||+||+|+|+..+..++.+.
T Consensus 231 ~~~~~gG~~-~L~~~la~~l---~~~~i~l~~~V~~I~~~~-~~~~~v~~~~~~g~~~~~ad~VI~a~P~~~l~~ll~~~ 305 (496)
T PLN02576 231 VGSFRGGLQ-TLPDALAKRL---GKDKVKLNWKVLSLSKND-DGGYSLTYDTPEGKVNVTAKAVVMTAPLYVVSEMLRPK 305 (496)
T ss_pred eEeccchHH-HHHHHHHHhh---CcCcEEcCCEEEEEEECC-CCcEEEEEecCCCceeEEeCEEEECCCHHHHHHHhccc
Confidence 233467754 7888887655 4 6899999999999876 34 33334432 3 369999999999999999998763
Q ss_pred cccCchhHHhhccCcceeeEEEEEEeccCCCCCC-----CCc---eeeccCCC---ccceeeeccccccccCCCCCeEEE
Q 009508 318 ILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPN-----VSN---ACSGFGDS---LAWTFFDLNKIYDEHKDDSATVIQ 386 (533)
Q Consensus 318 ~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~-----~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~ 386 (533)
. +...+.+..+.+.+..++.+.|+.+++... +.. .+....+. .++ +++ +...+...+++..++.
T Consensus 306 ~---~~~~~~l~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~lg~-~~~-s~~~p~~~~~~~~~l~ 380 (496)
T PLN02576 306 S---PAAADALPEFYYPPVAAVTTSYPKEAVKRERLIDGPLEGFGQLHPRKQGVKTLGT-IYS-SSLFPDRAPEGRVLLL 380 (496)
T ss_pred C---HHHHHHhccCCCCceEEEEEEEchHHcccccccCCCCCceEEEccCCCCCceEEE-Eee-cCcCCCCCCCCCEEEE
Confidence 2 223445788888899899999988765431 110 11100000 111 222 2222222233333332
Q ss_pred EEecC---CCCCCCCCHHHHHHHHHHHHhhhhcCCCCCccccceeeeCCCCccccCCCccccCCCCC---CCC--CceEE
Q 009508 387 ADFYH---ANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF---TSF--PNLFM 458 (533)
Q Consensus 387 ~~~~~---~~~~~~~~~~ei~~~~~~~l~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~p~~~---~~~--~~l~~ 458 (533)
.+.. ...+..++++++.+.++++|.++++......+....+.+|++++|.+.+|+....+... .+. +|||+
T Consensus 381 -~~~~~~~~~~~~~~s~ee~~~~~~~~L~~~~g~~~~~~p~~~~~~~w~~a~P~~~~g~~~~~~~~~~~l~~~~~~~l~~ 459 (496)
T PLN02576 381 -NYIGGSRNTGIASASEEELVEAVDRDLRKLLLKPGAPPPKVVGVRVWPKAIPQYLLGHLDVLEAAEKMEKDLGLPGLFL 459 (496)
T ss_pred -EEECCCCCcccccCCHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeEcCcccCCCCcCHHHHHHHHHHHHHhcCCCCEEE
Confidence 3322 24566788999999999999999974221134455677899999999999854332221 123 79999
Q ss_pred ecccccCCCCCchhhHHHHHHHHHHHHHHHHhCC
Q 009508 459 AGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 492 (533)
Q Consensus 459 aG~~~~~g~~~~~iegA~~SG~~aA~~Il~~~g~ 492 (533)
||+|+.. .++++|+.||.++|++|++.+..
T Consensus 460 aG~~~~g----~~i~~ai~sg~~aA~~i~~~~~~ 489 (496)
T PLN02576 460 GGNYRGG----VALGKCVESGYEAADLVISYLES 489 (496)
T ss_pred eccccCC----ccHHHHHHHHHHHHHHHHHHHhh
Confidence 9999973 47999999999999999998764
No 14
>PLN02268 probable polyamine oxidase
Probab=100.00 E-value=1.5e-31 Score=273.97 Aligned_cols=398 Identities=19% Similarity=0.158 Sum_probs=232.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC----------CcccccccccC--CCcHHHHHHHhCCCCCCcc
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP----------DDISMQGFWYP--FRNIFSLVDELGIKPFTGW 115 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~----------~~~G~~~~~~~--~~~~~~~~~~lg~~~~~~~ 115 (533)
.+|||||||++||+||+.|+++|++|+|||+++++||| +|.|++++++. .+.+.++++++|++.....
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~g~~~d~G~~~i~~~~~~~~~~~l~~~lgl~~~~~~ 80 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSFGFPVDMGASWLHGVCNENPLAPLIGRLGLPLYRTS 80 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcCCcccCCCCeeEeccCCCchHHHHHHHhCCceEecc
Confidence 48999999999999999999999999999999999999 68888888753 4458899999999743222
Q ss_pred cccceecCCCceeccccc-ccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCccHHHHHHHh
Q 009508 116 MKSAQYSEEGLEVEFPIF-QDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQF 194 (533)
Q Consensus 116 ~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~ 194 (533)
.........+.. ....+ .....++.... ..+ ... +..+...... ......+++|+.+|++++
T Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~-----~~~--~~~~~~~~~~-----~~~~~~~~~s~~~~~~~~ 143 (435)
T PLN02268 81 GDNSVLYDHDLE-SYALFDMDGNQVPQELV----TKV-----GET--FERILEETEK-----VRDEHEEDMSLLQAISIV 143 (435)
T ss_pred CCcccccccccc-ccceecCCCCCCCHHHH----HHH-----HHH--HHHHHHHHHH-----HHhccCCCcCHHHHHHHH
Confidence 111111111100 00000 00001111000 000 000 0000000000 001134678899987654
Q ss_pred C----------CCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcCCcceeeecCCcchhhHHHHHHHHHhc
Q 009508 195 G----------CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTR 264 (533)
Q Consensus 195 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~ 264 (533)
. +.+++...++.+ +...++.+++++|...... .. ..... -....+|+. .+++.|. .
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~---~~---~~~g~-~~~~~~G~~-~l~~~l~-----~ 209 (435)
T PLN02268 144 LERHPELRLEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ---EE---LLEGG-HGLMVRGYD-PVINTLA-----K 209 (435)
T ss_pred hhhCcccccchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC---cc---ccCCC-ceeecCCHH-HHHHHHh-----c
Confidence 2 122233333333 2344566777777642100 00 00000 012334533 4544443 2
Q ss_pred CCEEEcCceeeEEEeccCCceEEEEEe-CCeeeecCEEEEccChhhHHHhhhhccccCchh-HHhhccCcceeeEEEEEE
Q 009508 265 GCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKNSILCNREE-FLKVLNLASIDVVSVKLW 342 (533)
Q Consensus 265 G~~i~~~~~V~~I~~~~~~~~v~~v~~-~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~-~~~~~~l~~~~~~~v~l~ 342 (533)
+++|++|++|++|..++ ++ +. |++ +++++.||+||+|+|+..+++......++.++. .+.++.+.+.+..|+.+.
T Consensus 210 ~~~i~~~~~V~~i~~~~-~~-v~-v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~~~Kv~l~ 286 (435)
T PLN02268 210 GLDIRLNHRVTKIVRRY-NG-VK-VTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGIENKIALH 286 (435)
T ss_pred cCceeCCCeeEEEEEcC-Cc-EE-EEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccceeEEEEE
Confidence 66899999999999876 34 32 444 445799999999999999875432221112222 345778888888999999
Q ss_pred eccCCCCCCCCceeeccCCC--ccceeeeccccccccCCCCCeEEEEEecC--CCCCCCCCHHHHHHHHHHHHhhhhcCC
Q 009508 343 FDKKVTVPNVSNACSGFGDS--LAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDF 418 (533)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~ei~~~~~~~l~~~~p~~ 418 (533)
|++++|.... +++.... ....++... . ...+..++.+...+ +..+..++++++.+.++++|.++||..
T Consensus 287 f~~~fw~~~~---~~g~~~~~~~~~~~~~~~--~---~~~g~~~l~~~~~g~~a~~~~~~~~~e~~~~v~~~L~~~~~~~ 358 (435)
T PLN02268 287 FDSVFWPNVE---FLGVVAPTSYGCSYFLNL--H---KATGHPVLVYMPAGRLARDIEKLSDEAAANFAMSQLKKMLPDA 358 (435)
T ss_pred eCCCCCCCCc---eeeccCCCCCCceEEEec--c---cCCCCCEEEEEeccHHHHHHHhCCHHHHHHHHHHHHHHHcCCC
Confidence 9999885322 2222111 111112111 1 11122333322222 234567889999999999999999863
Q ss_pred CCCccccceeeeCCC------CccccCCCcc-ccCCCCCCCCCceEEecccccCCCCCchhhHHHHHHHHHHHHHHHHh
Q 009508 419 STATVMDHKIRRFPK------SLTHFFPGSY-KYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 490 (533)
Q Consensus 419 ~~~~v~~~~~~r~~~------~~~~~~pg~~-~~~p~~~~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~~~ 490 (533)
. .++...+.+|.. ++..+.||+. ...+....|.++|||||++++..++ ++||||+.||++||++|++.+
T Consensus 359 ~--~p~~~~~~~W~~dp~~~G~~~~~~~g~~~~~~~~l~~p~~~l~FAGe~ts~~~~-g~~eGA~~sG~raA~~v~~~l 434 (435)
T PLN02268 359 T--EPVQYLVSRWGSDPNSLGCYSYDLVGKPHDLYERLRAPVDNLFFAGEATSSDFP-GSVHGAYSTGVMAAEECRMRL 434 (435)
T ss_pred C--CccEEEecccCCCCCCCccCCCCCCCCCHHHHHHHhCCCCCeEEeeccCCCccc-ccHHHHHHHHHHHHHHHHHhh
Confidence 2 345555666642 2344456652 2333455678899999999998887 899999999999999999764
No 15
>PLN02529 lysine-specific histone demethylase 1
Probab=100.00 E-value=8.9e-31 Score=274.51 Aligned_cols=438 Identities=17% Similarity=0.178 Sum_probs=252.4
Q ss_pred cccccccccccccccCCCC---------------------cceeecCcCCcccCCCccccCCCCCCCCcEEEECCCHHHH
Q 009508 2 LASLRAAPTLCLSKRRYRN---------------------GFCCRASTLQSNANGDRNSTNNNGKNKKKIVVVGSGWAGL 60 (533)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvVIGaG~aGL 60 (533)
|+.|+.+|+..++....+. ...|-.+|.... ..++....++|+|||||++||
T Consensus 101 l~~w~~np~~~~~~~~a~~~~~~~i~~ci~~c~~~l~~~~~inc~vnp~~~~-------~~~~~~~~~~v~viGaG~aGl 173 (738)
T PLN02529 101 LARWRSNVGIWLSKGQIKETVSSEYEHLISAAYDFLLYNGYINFGVSPSFAS-------PIPEEGTEGSVIIVGAGLAGL 173 (738)
T ss_pred HHHHHHCCceeecHHHHhhhchhhHHHHHHHHHHHHHhCCCcceeecccccC-------CCCcccCCCCEEEECcCHHHH
Confidence 6778888888777664422 234444443321 122234568999999999999
Q ss_pred HHHHHHHHCCCeEEEEcCCCCCCCC--------------CcccccccccCCCc-HHHHHHHhCCCCCCcccccceecCCC
Q 009508 61 GAAHHLSKQGFDVTVLDDGNGFGSP--------------DDISMQGFWYPFRN-IFSLVDELGIKPFTGWMKSAQYSEEG 125 (533)
Q Consensus 61 ~aA~~L~~~G~~V~vlE~~~~~GG~--------------~~~G~~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~g 125 (533)
+||..|+++|++|+|+|+++++||+ +|.|++++++...+ +..+.+++|+..........++..+|
T Consensus 174 ~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~npl~~la~~lgl~~~~~~~~~~~~~~~G 253 (738)
T PLN02529 174 AAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDG 253 (738)
T ss_pred HHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccchHHHHHHHhCCCccccCCCceEEeCCC
Confidence 9999999999999999999999998 24677777765555 77888899987433222233444444
Q ss_pred ceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCccHHHHHHHhC------CCHH
Q 009508 126 LEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQFG------CSER 199 (533)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~------~~~~ 199 (533)
...... ........+.. +.++. ..+....+ ...+++|+.+|+.+.. .++.
T Consensus 254 ~~v~~~-----------~~~~~~~~~~~--~l~~~---~~l~~~~~--------~~~~d~Sl~~~le~~~~~~~~~~t~~ 309 (738)
T PLN02529 254 ALVDKE-----------IDSNIEFIFNK--LLDKV---TELRQIMG--------GFANDISLGSVLERLRQLYGVARSTE 309 (738)
T ss_pred cCcchh-----------hhhhHHHHHHH--HHHHH---HHHHHhcc--------cCccCCCHHHHHHHHHhhhccCCCHH
Confidence 322110 00000000000 00000 00000000 1245788999887643 2222
Q ss_pred HHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcCCcceeeecCCcchhhHHHHHHHHHhcCCEEEcCceeeEEEe
Q 009508 200 LYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIY 279 (533)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~ 279 (533)
. ..++...........+..++.......... .............||++ +|+++|++ +.+|++|++|++|..
T Consensus 310 e-~~ll~~~~~~le~a~~~~~s~LSl~~~~~~--~~~e~~G~~~~i~GG~~-~Li~aLA~-----~L~IrLnt~V~~I~~ 380 (738)
T PLN02529 310 E-RQLLDWHLANLEYANAGCLSDLSAAYWDQD--DPYEMGGDHCFLAGGNW-RLINALCE-----GVPIFYGKTVDTIKY 380 (738)
T ss_pred H-HHHHHHHHHHhceecCCChHHhhhhHhhhc--cccccCCceEEECCcHH-HHHHHHHh-----cCCEEcCCceeEEEE
Confidence 2 233333332222223333332211111100 00000111223457754 67776664 446999999999999
Q ss_pred ccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhh--hccccCchhHHhhccCcceeeEEEEEEeccCCCCCCCCceee
Q 009508 280 DEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK--NSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACS 357 (533)
Q Consensus 280 ~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~--~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~ 357 (533)
++ ++ +.|+++++++.||+||+|+|+..+.+..- .++++ ....+.++.+.+.+..|+.+.|+.++|..... ++
T Consensus 381 ~~-dG--VtV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP-~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~~~--~f 454 (738)
T PLN02529 381 GN-DG--VEVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELP-RRKLAAIDRLGFGLLNKVAMVFPSVFWGEELD--TF 454 (738)
T ss_pred cC-Ce--EEEEECCEEEEcCEEEECCCHHHHHhccccCCCCCC-HHHHHHHHcCCCceeEEEEEEeCCccccCCCC--ce
Confidence 86 44 23556667899999999999999985322 22221 22345689999999999999999998854321 22
Q ss_pred ccC----CCc-ccee-eeccccccccCCCCCeEEEEEecC--CCCCCCCCHHHHHHHHHHHHhhhhcC--CCCCccccce
Q 009508 358 GFG----DSL-AWTF-FDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHK 427 (533)
Q Consensus 358 ~~~----~~~-~~~~-~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~ei~~~~~~~l~~~~p~--~~~~~v~~~~ 427 (533)
++. ... .+.. ++... ..++.++.....+ +..+..++++++.+.+++.|+++|+. .....+....
T Consensus 455 G~l~~~~~~~g~~~~~~~~~~------~~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~ifgp~~~~vp~Pi~~v 528 (738)
T PLN02529 455 GCLNESSNKRGEFFLFYGYHT------VSGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGIYNPKGINVPDPIQTI 528 (738)
T ss_pred EEEeccCCCCceEEEEecCCC------CCCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHHhCccccccCCceEEE
Confidence 211 111 1111 11111 1123333333322 23456688999999999999999963 2112344444
Q ss_pred eeeCCC------CccccCCCccc-cCCCCCCC-CCceEEecccccCCCCCchhhHHHHHHHHHHHHHHHHhCC
Q 009508 428 IRRFPK------SLTHFFPGSYK-YMMRGFTS-FPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 492 (533)
Q Consensus 428 ~~r~~~------~~~~~~pg~~~-~~p~~~~~-~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~~~g~ 492 (533)
+.+|.. ++....|+... .......+ .++|||||++++..++ ++||||+.||.+||++|++.++.
T Consensus 529 ~t~W~~DP~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs~~~p-gtVeGAi~SG~RAA~eIl~~l~~ 600 (738)
T PLN02529 529 CTRWGSDPLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATTRQYP-ATMHGAFLSGLREASRILHVARS 600 (738)
T ss_pred EccCCcCCCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHhCCCC-eEeHHHHHHHHHHHHHHHHHHhh
Confidence 555542 22333333211 11111233 4789999999999898 89999999999999999999865
No 16
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.97 E-value=1.5e-29 Score=266.16 Aligned_cols=445 Identities=16% Similarity=0.134 Sum_probs=248.6
Q ss_pred CcccccccccccccccCCCCccee---------------------ecCcCCcccCCCccccCCCCCCCCcEEEECCCHHH
Q 009508 1 MLASLRAAPTLCLSKRRYRNGFCC---------------------RASTLQSNANGDRNSTNNNGKNKKKIVVVGSGWAG 59 (533)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~dVvVIGaG~aG 59 (533)
+|+.|+.+|++.++....+....+ -.+|..+. ......+...+++|+|||||++|
T Consensus 175 il~lW~~np~~~~t~~~a~~~~~~~~~~l~~~~~~~l~~~g~in~gv~~~~~~----~~~~~~~~~~~~~v~IiGaG~aG 250 (808)
T PLN02328 175 ILARWRSNVSNWLTRDHALESIRAEHKNLVDSAYNFLLEHGYINFGVAPVIKE----AQLRSFEGVEPANVVVVGAGLAG 250 (808)
T ss_pred HHHHHHhCCcceecHHHHHhhcchhhHHHHHHHHHHHhccCceeeeccccccc----cccCCCCCCCCCCEEEECcCHHH
Confidence 367899999988877666443332 22222211 01122334456899999999999
Q ss_pred HHHHHHHHHCCCeEEEEcCCCCCCCC--------------CcccccccccCCC-cHHHHHHHhCCCCCCcccccceecCC
Q 009508 60 LGAAHHLSKQGFDVTVLDDGNGFGSP--------------DDISMQGFWYPFR-NIFSLVDELGIKPFTGWMKSAQYSEE 124 (533)
Q Consensus 60 L~aA~~L~~~G~~V~vlE~~~~~GG~--------------~~~G~~~~~~~~~-~~~~~~~~lg~~~~~~~~~~~~~~~~ 124 (533)
|+||+.|++.|++|+|+|+++++||+ +|.|++++.+... .+..+++++|+..........++..+
T Consensus 251 l~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~npl~~l~~~lgl~~~~~~~~~~~~~~d 330 (808)
T PLN02328 251 LVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGNPLGVLARQLGLPLHKVRDICPLYLPD 330 (808)
T ss_pred HHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCccHHHHHHHHcCCceEecCCCceEEeCC
Confidence 99999999999999999999999999 2456666665443 46778899998732221222333444
Q ss_pred CceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCccHHHHHHHh----CCC-HH
Q 009508 125 GLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQF----GCS-ER 199 (533)
Q Consensus 125 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~----~~~-~~ 199 (533)
|..+... ++...... +..+ .++. ..+.... . ......+.|+.+++..+ +.. .+
T Consensus 331 G~~~~~~-------~~~~v~~~-f~~l-----L~~~---~klr~~~-----~-~~~~~~D~SLg~~le~~~~~~~~~~~~ 388 (808)
T PLN02328 331 GKAVDAE-------IDSKIEAS-FNKL-----LDRV---CKLRQAM-----I-EEVKSVDVNLGTALEAFRHVYKVAEDP 388 (808)
T ss_pred CcCcchh-------hhhhHHHH-HHHH-----HHHH---HHHHHhh-----h-hcccccCcCHHHHHHHHhhhhccCCCH
Confidence 4322110 01000000 0000 0000 0000000 0 00111346777777632 111 11
Q ss_pred HHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhc-CCcceeeecCCcchhhHHHHHHHHHhcCCEEEcCceeeEEE
Q 009508 200 LYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQ-KNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFI 278 (533)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~ 278 (533)
....+++..+.......+..++.. ....+...... .........||+. .|+++|++.+ .|++|++|++|.
T Consensus 389 ~e~~Ll~w~lanlE~~~gs~ls~L---Sl~~w~qd~~~e~~G~~~~v~GG~~-~Li~aLa~~L-----~I~ln~~V~~I~ 459 (808)
T PLN02328 389 QERMLLNWHLANLEYANASLMSNL---SMAYWDQDDPYEMGGDHCFIPGGND-TFVRELAKDL-----PIFYERTVESIR 459 (808)
T ss_pred HHHHHHHHHHHHHhccchhhHHHH---HhhhhhccccccCCCeEEEECCcHH-HHHHHHHhhC-----CcccCCeeEEEE
Confidence 112233322211111111111111 10010000000 0111223457754 7888887654 399999999999
Q ss_pred eccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhhccccCc-hhHHhhccCcceeeEEEEEEeccCCCCCCCCceee
Q 009508 279 YDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNR-EEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACS 357 (533)
Q Consensus 279 ~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~-~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~ 357 (533)
.++ +++ .|..+++++.||+||+|+|+..+.+..-...++.+ ...+.++.+.+.+..|+.+.|+.++|..... .+
T Consensus 460 ~~~-dgV--~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~~d--~f 534 (808)
T PLN02328 460 YGV-DGV--IVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYGLLNKVALLFPYNFWGGEID--TF 534 (808)
T ss_pred EcC-CeE--EEEeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCcceEEEEEEeCCccccCCCC--ce
Confidence 986 443 23556678999999999999998742111111122 2335689999999999999999998853211 12
Q ss_pred ccC---C-Ccc-c-eeeeccccccccCCCCCeEEEEEecCC--CCCCCCCHHHHHHHHHHHHhhhhcC--CCCCccccce
Q 009508 358 GFG---D-SLA-W-TFFDLNKIYDEHKDDSATVIQADFYHA--NELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHK 427 (533)
Q Consensus 358 ~~~---~-~~~-~-~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~ei~~~~~~~l~~~~p~--~~~~~v~~~~ 427 (533)
|.. . ..+ + .+++... ..++.++.....+. ..+..++++++++.+++.|+++|+. .....+....
T Consensus 535 G~l~~d~s~rG~~~lf~s~s~------~~G~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~ifgp~~~~vp~P~~~~ 608 (808)
T PLN02328 535 GHLTEDPSMRGEFFLFYSYSS------VSGGPLLIALVAGDAAVKFETLSPVESVKRVLQILRGIFHPKGIVVPDPVQAV 608 (808)
T ss_pred EEEeecCCCCceEEEEecCCC------CCCCcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHHhCcccccccCcceEE
Confidence 211 0 111 1 1111111 12334443333332 3455678899999999999999963 1112445556
Q ss_pred eeeCCC------CccccCCCccc-cCCCCCCC--CCceEEecccccCCCCCchhhHHHHHHHHHHHHHHHHhCC
Q 009508 428 IRRFPK------SLTHFFPGSYK-YMMRGFTS--FPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 492 (533)
Q Consensus 428 ~~r~~~------~~~~~~pg~~~-~~p~~~~~--~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~~~g~ 492 (533)
+.+|.. ++..+.+|+.. ..+....+ .++|||||++++..++ ++|+||+.||.++|++|++.++.
T Consensus 609 vtrW~~DP~s~GSYS~~~pG~~~~~~~~LaePv~~GRL~FAGEaTs~~~~-GtVhGAi~SGlRAA~eIl~~~~~ 681 (808)
T PLN02328 609 CTRWGKDCFTYGSYSYVAVGSSGDDYDILAESVGDGRVFFAGEATNKQYP-ATMHGAFLSGMREAANILRVARR 681 (808)
T ss_pred EecCCCCCCcCCCCCCCCCCCchhHHHHHhccCCCCCEEEEEhhHhCCCC-eEhHHHHHHHHHHHHHHHHHHhh
Confidence 666642 23344556532 12222334 3689999999998888 89999999999999999999874
No 17
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.97 E-value=7.6e-29 Score=257.65 Aligned_cols=422 Identities=17% Similarity=0.175 Sum_probs=240.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC----------CcccccccccC--CCcHHHHHHHhCCCCC--C
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP----------DDISMQGFWYP--FRNIFSLVDELGIKPF--T 113 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~----------~~~G~~~~~~~--~~~~~~~~~~lg~~~~--~ 113 (533)
+||||||||++||+||..|+++|++|+|+|+++++||+ +|.|.+.+... ......+++++|+... .
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 81 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRRGFTFDVGATQVAGLEPGGIHARIFRELGIPLPEAK 81 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccCCEEEeecceEEEecCcCCHHHHHHHHcCCCCcccc
Confidence 68999999999999999999999999999999999998 67788776542 3346678889998732 1
Q ss_pred cccc-cceecCCC-ceecccccccCCC--------CCCCcccchhhhhcC--------------CCHHhhhhcchhhHHh
Q 009508 114 GWMK-SAQYSEEG-LEVEFPIFQDLNQ--------LPTPLGTLFYTQFSR--------------LPLVDRLTSLPLMAAV 169 (533)
Q Consensus 114 ~~~~-~~~~~~~g-~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~--------------l~~~~~~~~~~~~~~~ 169 (533)
..+. ...+..+| ..+... .+..+ .+.. .. ++..+.. ++..........+.
T Consensus 82 ~~d~~~~~~~~dg~~~~~~~--~d~~~~~~~l~~~~p~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 155 (492)
T TIGR02733 82 ILDPACAVDLPDGSEPIPLW--HDPDRWQKERERQFPGS-ER-FWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVS-- 155 (492)
T ss_pred cCCCCcEEEECCCceEeeee--cCHHHHHHHHHHHCCCh-HH-HHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH--
Confidence 1111 12223344 121110 01000 0110 00 0000000 00000000000000
Q ss_pred hcCCCCchhhhccCCccHHHHHHHhC-CCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcCCcceeeecCC
Q 009508 170 IDFDNTDVAWRKYDSITARELFKQFG-CSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGT 248 (533)
Q Consensus 170 ~~~~~~~~~~~~~~~~s~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~ 248 (533)
...........+...|+.+|+++++ ..++.+..++........+.++.+.++......+... .......+++||
T Consensus 156 -~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~G~~~~~GG 230 (492)
T TIGR02733 156 -ALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGATVLQMA----QAPHGLWHLHGS 230 (492)
T ss_pred -hcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHHHhhcc----ccCCCceeecCc
Confidence 0000000111234578999999864 3455556666554433444555566654332222111 111234567898
Q ss_pred cchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe-CC-----eeeecCEEEEccChhhHHHhhhhccccCc
Q 009508 249 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-----ETYSAGAVVLAVGISTLQELIKNSILCNR 322 (533)
Q Consensus 249 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~-~~-----~~~~ad~VV~a~~~~~~~~ll~~~~~~~~ 322 (533)
++ .|+++|++.++++|++|+++++|++|..++ +++.++.. ++ +++.||+||+++++..+.+++++...+ .
T Consensus 231 ~~-~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~-~ 306 (492)
T TIGR02733 231 MQ-TLSDRLVEALKRDGGNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLP-P 306 (492)
T ss_pred HH-HHHHHHHHHHHhcCCEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEECCEEEECCCHHHHHHhcCcccCC-H
Confidence 65 899999999999999999999999999886 54434432 32 478999999999999998888653221 1
Q ss_pred hhHHhhccCccee-eEEEEEEeccCC-CCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEec-CCCCCC---
Q 009508 323 EEFLKVLNLASID-VVSVKLWFDKKV-TVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFY-HANELM--- 396 (533)
Q Consensus 323 ~~~~~~~~l~~~~-~~~v~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~--- 396 (533)
...+.++.+...+ ..++++.++... ...........++. ....+.......+...+++.+++.+... ....|.
T Consensus 307 ~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~d~~~aP~G~~~l~~~~~~~~~~~~~~~ 385 (492)
T TIGR02733 307 GYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPPHLQFLSDH-QGSLFVSISQEGDGRAPQGEATLIASSFTDTNDWSSLD 385 (492)
T ss_pred HHHHHHhcCCCCCceEEEEEeecccccCCCCCcceeeccCC-CceEEEEeCCccccCCCCCceEEEEEcCCCHHHHcCCC
Confidence 2333456666554 446788887632 11111111111221 1223333333334455666666543322 212221
Q ss_pred ----CCCHHHHHHHHHHHHhhhhcCCCCCccccceeee----------CCCCccccCC--Cccc-cCCCCCCCCCceEEe
Q 009508 397 ----PLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRR----------FPKSLTHFFP--GSYK-YMMRGFTSFPNLFMA 459 (533)
Q Consensus 397 ----~~~~~ei~~~~~~~l~~~~p~~~~~~v~~~~~~r----------~~~~~~~~~p--g~~~-~~p~~~~~~~~l~~a 459 (533)
...++++.+.+++.+++.+|++++ .+....+.. ..++.+...+ .+.. .++..+++++|||+|
T Consensus 386 ~~~y~~~k~~~~~~il~~le~~~p~l~~-~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~ 464 (492)
T TIGR02733 386 EEDYTAKKKQYTQTIIERLGHYFDLLEE-NWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLC 464 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccc-cEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEe
Confidence 122456888899999999999864 554443331 1112222211 1111 123346899999999
Q ss_pred cccccCCCCCchhhHHHHHHHHHHHHHHHH
Q 009508 460 GDWITTRHGSWSQERSYVTGLEAANRVVDY 489 (533)
Q Consensus 460 G~~~~~g~~~~~iegA~~SG~~aA~~Il~~ 489 (533)
|+++++| +++.+++.||+.+|+.|++.
T Consensus 465 G~~~~pG---~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 465 GDSIHPG---EGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred cCccCCC---CcHHHHHHHHHHHHHHHhhc
Confidence 9999775 36899999999999999863
No 18
>PLN02676 polyamine oxidase
Probab=99.97 E-value=1.4e-28 Score=252.17 Aligned_cols=411 Identities=14% Similarity=0.162 Sum_probs=232.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCCCCC----------Cccccccccc----CCCcHHHHHHHhCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDGNGFGSP----------DDISMQGFWY----PFRNIFSLVDELGI 109 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~~~~GG~----------~~~G~~~~~~----~~~~~~~~~~~lg~ 109 (533)
...+||+|||||++||+||++|+++|. +|+|+|+++++||+ +|.|++++.. ..+.++++.+++|+
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~ 103 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAGVSVELGANWVEGVGGPESNPIWELANKLKL 103 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCCeEEecCCEEEEcccCcccChHHHHHHhcCC
Confidence 456799999999999999999999998 69999999999998 4678887753 35668899999998
Q ss_pred CCCCc-ccc--cceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCcc
Q 009508 110 KPFTG-WMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSIT 186 (533)
Q Consensus 110 ~~~~~-~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 186 (533)
..... ... ...+..+|... +... ...+. .....+..+....... ......++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~g~~~-----------~~~~----~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~s 160 (487)
T PLN02676 104 RTFYSDFDNLSSNIYKQDGGLY-----------PKKV----VQKSM-----KVADASDEFGENLSIS---LSAKKAVDIS 160 (487)
T ss_pred ceeecCccccceeEECCCCCCC-----------CHHH----HHHHH-----HHHHHHHHHHHHHHHh---hcccCCCCcc
Confidence 84322 211 11222222211 0000 00000 0000000000000000 0001223444
Q ss_pred H--HHHHHHhCCCHHHHHHHHHHHHH-hhccCCchhhhHHHHHHHHHHHHHhhcCCcceeee-cCCcchhhHHHHHHHHH
Q 009508 187 A--RELFKQFGCSERLYRNVIGPLVQ-VGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWC-RGTLREKIFEPWMDSMR 262 (533)
Q Consensus 187 ~--~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~l~~~l~~~l~ 262 (533)
+ .+++.... ...........+.. ..++.++.++|....... ..+ ........... ++|+ +.|++.|++.+.
T Consensus 161 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~~-~~~--~~~g~~~~~~~~~~G~-~~l~~~La~~~~ 235 (487)
T PLN02676 161 ILTAQRLFGQV-PKTPLEMVIDYYNYDYEFAEPPRVTSLKNTEPN-PTF--VDFGEDEYFVADPRGY-ESLVYYLAEQFL 235 (487)
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHhccceeccCccccchhhcCcc-ccc--ccCCCceEEeecCCCH-HHHHHHHHhhcc
Confidence 4 22333221 10011111111111 124556666665432110 000 01111111111 4564 478888887764
Q ss_pred hc------CCEEEcCceeeEEEeccCCceEEEEEeC-CeeeecCEEEEccChhhHHHhhhhccccCchh-HHhhccCcce
Q 009508 263 TR------GCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIKNSILCNREE-FLKVLNLASI 334 (533)
Q Consensus 263 ~~------G~~i~~~~~V~~I~~~~~~~~v~~v~~~-~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~-~~~~~~l~~~ 334 (533)
+. +.+|++|++|++|..++ ++ + .|++. +.+++||+||+|+|+..+++..-...++.++. .+.++.+...
T Consensus 236 ~~~~~~~~~~~I~l~~~V~~I~~~~-~g-V-~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~k~~ai~~l~~g 312 (487)
T PLN02676 236 STKSGKITDPRLKLNKVVREISYSK-NG-V-TVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDWKIEAIYQFDMA 312 (487)
T ss_pred cccccccCCCceecCCEeeEEEEcC-Cc-E-EEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHHHHHHHHhCCce
Confidence 32 36799999999999886 44 3 34444 45899999999999998875212221222232 3457888888
Q ss_pred eeEEEEEEeccCCCCCCCCceeeccCCCc-c-ceeeeccccccccCCCCCeEEEEEecCC--CCCCCCCHHHHHHHHHHH
Q 009508 335 DVVSVKLWFDKKVTVPNVSNACSGFGDSL-A-WTFFDLNKIYDEHKDDSATVIQADFYHA--NELMPLKDDQVVAKAVSY 410 (533)
Q Consensus 335 ~~~~v~l~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~ei~~~~~~~ 410 (533)
.+.|+.+.|++++|.......++.+.... . +.++. .....+ ++..++...+.+. ..+..+++++..+.+++.
T Consensus 313 ~~~Kv~l~f~~~FW~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~ 388 (487)
T PLN02676 313 VYTKIFLKFPYKFWPSGPGTEFFLYAHERRGYYPFWQ--HLENEY--PGSNVLFVTVTDEESRRIEQQPDSETKAEIMEV 388 (487)
T ss_pred eeEEEEEEeCCCCCCCCCCceeeeeeccccccchhhh--hcccCC--CCCCEEEEEechHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999998642211111111100 0 00000 000111 1223433333322 345567889999999999
Q ss_pred HhhhhcCCCCCccccceeeeCC------CCccccCCCccc-cCCCCCCCCCceEEecccccCCCCCchhhHHHHHHHHHH
Q 009508 411 LSKCIKDFSTATVMDHKIRRFP------KSLTHFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAA 483 (533)
Q Consensus 411 l~~~~p~~~~~~v~~~~~~r~~------~~~~~~~pg~~~-~~p~~~~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA 483 (533)
|.++||.-. ..+......+|. +++..+.||+.. ..+....|+++|||||++++..++ ++||||+.||++||
T Consensus 389 L~~~~g~~~-~~p~~~~~~~W~~dp~s~Gsys~~~pG~~~~~~~~L~~P~gri~FAGe~ts~~~~-g~~eGA~~SG~RaA 466 (487)
T PLN02676 389 LRKMFGPNI-PEATDILVPRWWSNRFFKGSYSNWPIGVSRYEFDQIRAPVGRVYFTGEHTSEKYN-GYVHGAYLAGIDTA 466 (487)
T ss_pred HHHHhCCCC-CCcceEEecccCCCCCCCcccCCCCCCCChhHHHHHhCCCCceEEeccccccccc-cchHHHHHHHHHHH
Confidence 999997421 133444343442 234455667533 223445678999999999998888 89999999999999
Q ss_pred HHHHHHhCC
Q 009508 484 NRVVDYLGD 492 (533)
Q Consensus 484 ~~Il~~~g~ 492 (533)
++|++.++.
T Consensus 467 ~~I~~~l~~ 475 (487)
T PLN02676 467 NDLLECIKK 475 (487)
T ss_pred HHHHHHhcc
Confidence 999999974
No 19
>PLN03000 amine oxidase
Probab=99.97 E-value=5e-29 Score=261.75 Aligned_cols=444 Identities=16% Similarity=0.170 Sum_probs=246.2
Q ss_pred cccccccccccccccCCCCcceeecCcCCc----------ccCCCcc----ccCCCCCCCCcEEEECCCHHHHHHHHHHH
Q 009508 2 LASLRAAPTLCLSKRRYRNGFCCRASTLQS----------NANGDRN----STNNNGKNKKKIVVVGSGWAGLGAAHHLS 67 (533)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~----~~~~~~~~~~dVvVIGaG~aGL~aA~~L~ 67 (533)
|+.|+.+|++.++................. -.+.... ...+......+|+|||||++||++|+.|+
T Consensus 125 l~lW~~np~~~~t~~~a~~~~~~~~~~l~~~~~~~L~r~G~in~g~~~~~~~~~~~~~~~~~VvIIGaG~aGL~aA~~L~ 204 (881)
T PLN03000 125 ISKWRENISSWVTKEMFLGSIPKHCSSLLDSAYNYLVTHGYINFGIAQAIKDKFPAQSSKSSVVIVGAGLSGLAAARQLM 204 (881)
T ss_pred HHHHHHCCceeecHHHHhhhcchhHHHHHHHHHHHHHHcCcccHHHHHHHHhhccccCCCCCEEEECccHHHHHHHHHHH
Confidence 678999999998887664332221111111 1111111 01112234689999999999999999999
Q ss_pred HCCCeEEEEcCCCCCCCC--------------CcccccccccCCCc-HHHHHHHhCCCCCCcccccceecCCCceecccc
Q 009508 68 KQGFDVTVLDDGNGFGSP--------------DDISMQGFWYPFRN-IFSLVDELGIKPFTGWMKSAQYSEEGLEVEFPI 132 (533)
Q Consensus 68 ~~G~~V~vlE~~~~~GG~--------------~~~G~~~~~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~g~~~~~~~ 132 (533)
+.|++|+|+|+++++||+ +|.|++++.+...+ +..+.+++|+..........++..+|......
T Consensus 205 ~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~~L~~qlgl~l~~~~~~~~ly~~~Gk~v~~~- 283 (881)
T PLN03000 205 RFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLGIIARQLGSSLYKVRDKCPLYRVDGKPVDPD- 283 (881)
T ss_pred HCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHHHHHHHcCCceeecCCCCeEEEeCCcCCchh-
Confidence 999999999999999999 35677777766554 45667899987433222333444444322110
Q ss_pred cccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCccHHHHHHH----h--CCCHHHHHHHHH
Q 009508 133 FQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELFKQ----F--GCSERLYRNVIG 206 (533)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~----~--~~~~~~~~~~~~ 206 (533)
........+.. +.++. ..+....+. ...+.++.++++. . .+.+.. ..++.
T Consensus 284 ----------~~~~ve~~fn~--lLd~~---~~lr~l~~~--------~~~D~SLg~aLe~~~~~~g~~~t~e~-~~Ll~ 339 (881)
T PLN03000 284 ----------VDLKVEVAFNQ--LLDKA---SKLRQLMGD--------VSMDVSLGAALETFRQVSGNDVATEE-MGLFN 339 (881)
T ss_pred ----------hhhhHHHHHHH--HHHHH---HHHHHHhcc--------cCcCCcHHHHHHHHHHHHcccCCHHH-HHHHH
Confidence 00000000000 00110 000011100 0112333332221 1 111211 12222
Q ss_pred HHHHhhccCCchhhhHHHHHHHHHHHHHhhcCCcceeeecCCcchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceE
Q 009508 207 PLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCI 286 (533)
Q Consensus 207 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v 286 (533)
..+..........++..... .+................||++ .|+++|++.+ .|++|++|++|..++ +++
T Consensus 340 w~lanLE~~~as~ls~LSl~--~wdqd~~~e~~G~~~~v~GG~~-~LieaLa~~L-----~I~Ln~~Vt~I~~~~-dgV- 409 (881)
T PLN03000 340 WHLANLEYANAGLVSKLSLA--FWDQDDPYDMGGDHCFLPGGNG-RLVQALAENV-----PILYEKTVQTIRYGS-NGV- 409 (881)
T ss_pred HHHHHHhcccccCHHHHHHH--HhhhcccccCCCceEEeCCCHH-HHHHHHHhhC-----CcccCCcEEEEEECC-CeE-
Confidence 22211111111112111100 0000000000111223457754 7888887654 499999999999886 343
Q ss_pred EEEEeCCeeeecCEEEEccChhhHHH--hhhhccccCchhHHhhccCcceeeEEEEEEeccCCCCCCCCceeeccC----
Q 009508 287 SDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFG---- 360 (533)
Q Consensus 287 ~~v~~~~~~~~ad~VV~a~~~~~~~~--ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~---- 360 (533)
.|+++++++.||+||+|+|+..++. +...++++ ....+.++.+.+....|+.+.|++++|..... ++|..
T Consensus 410 -~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP-~~K~~AI~rL~~G~l~KViL~Fd~~FW~~d~~--~FG~l~~~~ 485 (881)
T PLN03000 410 -KVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELP-QRKLDCIKRLGFGLLNKVAMLFPYVFWSTDLD--TFGHLTEDP 485 (881)
T ss_pred -EEEECCcEEEeceEEEcCCHHHHhhCceeeCCCCC-HHHHHHHHcCCCcceEEEEEEeCCccccCCCC--ceeEEecCC
Confidence 3455656899999999999999883 22222221 12335689999999999999999999854321 22221
Q ss_pred C--CccceeeeccccccccCC-CCCeEEEEEecC--CCCCCCCCHHHHHHHHHHHHhhhhcC--CCCCccccceeeeCC-
Q 009508 361 D--SLAWTFFDLNKIYDEHKD-DSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKD--FSTATVMDHKIRRFP- 432 (533)
Q Consensus 361 ~--~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~--~~~~~~~~~~ei~~~~~~~l~~~~p~--~~~~~v~~~~~~r~~- 432 (533)
. ...+.+++ +.+ .++.++...+.+ +..+..++++++.+.++++|+++|+. ..-..++...+.+|.
T Consensus 486 ~~rg~~~~f~s-------~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrkifg~~~~~vp~Pv~~ivtrW~~ 558 (881)
T PLN03000 486 NYRGEFFLFYS-------YAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGIYEPQGINVPDPLQTVCTRWGG 558 (881)
T ss_pred CCCceeEEEeC-------CCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHHhCccccccCCceEEEEccCCC
Confidence 0 11111221 111 233344333333 23466788999999999999999962 211234455555553
Q ss_pred -----CCccccCCCccc-cCCCCCCCC--CceEEecccccCCCCCchhhHHHHHHHHHHHHHHHHhCC
Q 009508 433 -----KSLTHFFPGSYK-YMMRGFTSF--PNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 492 (533)
Q Consensus 433 -----~~~~~~~pg~~~-~~p~~~~~~--~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~~~g~ 492 (533)
+++..+.||+.. .......|+ ++|||||++++..++ ++|+||+.||.+||++|++.++.
T Consensus 559 DPysrGSYS~~~pG~~~~~~d~LaePv~~GRIfFAGEaTs~~~~-GTVhGAieSGlRAA~eIl~~l~~ 625 (881)
T PLN03000 559 DPFSLGSYSNVAVGASGDDYDILAESVGDGRLFFAGEATTRRYP-ATMHGAFVTGLREAANMAQSAKA 625 (881)
T ss_pred CCCCCccccCCCCCCchHHHHHHhCcCCCCcEEEeehHHhCCCC-eeHHHHHHHHHHHHHHHHHHhhh
Confidence 233445566532 122223443 589999999998888 89999999999999999999865
No 20
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.96 E-value=2.7e-28 Score=246.71 Aligned_cols=416 Identities=21% Similarity=0.215 Sum_probs=227.1
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC-----------CcccccccccCCC-cHHHHHHHhCCC
Q 009508 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP-----------DDISMQGFWYPFR-NIFSLVDELGIK 110 (533)
Q Consensus 43 ~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~-----------~~~G~~~~~~~~~-~~~~~~~~lg~~ 110 (533)
....+++|||||||+|||+||.+|++.|++|+|||+++++||| +|.|++++.+.++ .+.-+.+++|++
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l~~qlgl~ 90 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALLSKQLGLE 90 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHHHHHhCcc
Confidence 4556789999999999999999999999999999999999999 6789999998887 566677889999
Q ss_pred CCCcccccceecCCCceecccccccCCCC-CCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccC----Cc
Q 009508 111 PFTGWMKSAQYSEEGLEVEFPIFQDLNQL-PTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYD----SI 185 (533)
Q Consensus 111 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 185 (533)
..........+..++... ... .... +...... +.....+. +...... ..+....-........ ..
T Consensus 91 ~~~~~~~~~l~~~~~~~~-~~~---~d~~~~~~~~~l-~~~~~~~~--~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~ 160 (501)
T KOG0029|consen 91 LYKVRDTCPLFNENGGES-DKV---FDDFVEQEFNRL-LDDASNLE--QRLDNEI---IGISDDSFGEALEAFLSASRLM 160 (501)
T ss_pred cceecccccccccCCccc-ccc---cccchhhhhHHH-HHHHhhhh--hhhhhcc---cccccccHHHHHHhHHHHHHHH
Confidence 655444444444333111 000 0000 0011111 11111000 0000000 0000000000000000 00
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcCCcc-eeeecCCcchhhHHHHHHHHHhc
Q 009508 186 TARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFD-LVWCRGTLREKIFEPWMDSMRTR 264 (533)
Q Consensus 186 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~l~~~l~~~l~~~ 264 (533)
....+....+.......-.+.. ...+.....+....... .. ...+.... -....+|+. .++..+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~---d~~~~~~~~~~~~~~G~~-~v~~~la~----- 227 (501)
T KOG0029|consen 161 KTLLELLLEGEADKVLQWHLVN--LELTFIAHLENASARLW--DQ---DELFGGGGIHLLMKGGYE-PVVNSLAE----- 227 (501)
T ss_pred HhhHHHhhhhhhhHHHHHHHHH--HHHHhhccHhHhhHHhh--hh---hhhcccccchhHhhCCcc-HHHhhcCC-----
Confidence 0011111111111110000000 11111111111111000 00 00111111 001123322 33333332
Q ss_pred CCEEEcCceeeEEEeccCCce-EEEEEeCCeeeecCEEEEccChhhHHHhhhhc-cccCchhHHhhccCcceeeEEEEEE
Q 009508 265 GCEFLDGRRVTDFIYDEERCC-ISDVVCGKETYSAGAVVLAVGISTLQELIKNS-ILCNREEFLKVLNLASIDVVSVKLW 342 (533)
Q Consensus 265 G~~i~~~~~V~~I~~~~~~~~-v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~-~~~~~~~~~~~~~l~~~~~~~v~l~ 342 (533)
|.+|+++..|.+|+..+ ++. .+.+.+.. .+.+|.||+++|...+..-.... |.......+.++.+......|+.+.
T Consensus 228 ~l~I~~~~~v~~i~~~~-~~~~~~~~~~~~-~~~~d~vvvt~pl~vLk~~~i~F~P~Lp~~k~~aI~~lg~g~~~Kv~l~ 305 (501)
T KOG0029|consen 228 GLDIHLNKRVRKIKYGD-DGAVKVTVETGD-GYEADAVVVTVPLGVLKSGLIEFSPPLPRWKQEAIDRLGFGLVNKVILE 305 (501)
T ss_pred CcceeeceeeEEEEEec-CCceEEEEECCC-eeEeeEEEEEccHHHhccCceeeCCCCcHHHHHHHHhcCCCceeEEEEE
Confidence 89999999999999987 453 23334444 49999999999999988622222 2222334456999999999999999
Q ss_pred eccCCCCCCCCceeeccCC---Cccc--eeeeccccccccCCCCCeEEEEEecC--CCCCCCCCHHHHHHHHHHHHhhhh
Q 009508 343 FDKKVTVPNVSNACSGFGD---SLAW--TFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCI 415 (533)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~ei~~~~~~~l~~~~ 415 (533)
|+..+|.+ ...+++... ...+ .+++... ..... ++.+.... ++.+..++++++++.++..|+++|
T Consensus 306 F~~~fW~~--~~d~fg~~~~~~~~~~~~~f~~~~~----~~~~~--~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~f 377 (501)
T KOG0029|consen 306 FPRVFWDQ--DIDFFGIVPETSVLRGLFTFYDCKP----VAGHP--VLMSVVVGEAAERVETLSDSEIVKKAMKLLRKVF 377 (501)
T ss_pred eccccCCC--CcCeEEEccccccccchhhhhhcCc----cCCCC--eEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHHh
Confidence 99999952 222333221 1111 1122211 11112 22222222 356778999999999999999999
Q ss_pred cCCCCCccccceeeeCCCC------ccccCCCccccC-CCCCCCCCc-eEEecccccCCCCCchhhHHHHHHHHHHHHHH
Q 009508 416 KDFSTATVMDHKIRRFPKS------LTHFFPGSYKYM-MRGFTSFPN-LFMAGDWITTRHGSWSQERSYVTGLEAANRVV 487 (533)
Q Consensus 416 p~~~~~~v~~~~~~r~~~~------~~~~~pg~~~~~-p~~~~~~~~-l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il 487 (533)
+......+++..+.+|... ++...++..... .....|+.+ +||||+++...++ ++|+||+.||.++|..|+
T Consensus 378 ~~~~~~~p~~~~vt~w~~d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~~~~~-~tm~GA~~sG~~~a~~i~ 456 (501)
T KOG0029|consen 378 GSEEVPDPLDALVTRWGTDPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATSRKYP-GTMHGAYLSGLRAASDIL 456 (501)
T ss_pred ccCcCCCccceeeeeecccccCCccccccCCCCChhHHHHHhccccCcEEecchhhcccCC-CchHHHHHhhHHHHHHHH
Confidence 9433345666667766332 222223321111 223457777 9999999999999 899999999999999999
Q ss_pred HHhCC
Q 009508 488 DYLGD 492 (533)
Q Consensus 488 ~~~g~ 492 (533)
..++.
T Consensus 457 ~~~~~ 461 (501)
T KOG0029|consen 457 DSLIE 461 (501)
T ss_pred HHHHh
Confidence 99984
No 21
>PLN02568 polyamine oxidase
Probab=99.96 E-value=6e-28 Score=248.99 Aligned_cols=424 Identities=17% Similarity=0.171 Sum_probs=226.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-----CeEEEEcCCCCCCCC----------CcccccccccC-CCcHHHHHHHhCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQG-----FDVTVLDDGNGFGSP----------DDISMQGFWYP-FRNIFSLVDELGI 109 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G-----~~V~vlE~~~~~GG~----------~~~G~~~~~~~-~~~~~~~~~~lg~ 109 (533)
+.+||||||||++||+||+.|++.| ++|+|||+++++||+ +|.|++++++. .+.+.++++++|+
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~~~g~~~d~G~~~~~g~~~~~~~~l~~~~g~ 83 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSEFGGERIEMGATWIHGIGGSPVYKIAQEAGS 83 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEEeCCeEEecCCceeCCCCCCHHHHHHHHhCC
Confidence 4579999999999999999999887 899999999999999 67888888864 4667899999998
Q ss_pred CCCC-ccc-------ccceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCc----h
Q 009508 110 KPFT-GWM-------KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTD----V 177 (533)
Q Consensus 110 ~~~~-~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~ 177 (533)
.... .+. ....+..+|..+.... ...+...+..-+.... ++. ....-....++.... .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~d~~~~~~~~~~ 153 (539)
T PLN02568 84 LESDEPWECMDGFPDRPKTVAEGGFEVDPSI-------VESISTLFRGLMDDAQ--GKL-IEPSEVDEVDFVKLAAKAAR 153 (539)
T ss_pred ccccCcceecccccccceEEccCCcCCCHHH-------HHHHHHHHHHHHHHhh--ccc-ccccccccccccccchhccc
Confidence 6322 111 0112222332211000 0000000000000000 000 000000000000000 0
Q ss_pred hhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHh-------------hcC-----C
Q 009508 178 AWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA-------------HQK-----N 239 (533)
Q Consensus 178 ~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-------------~~~-----~ 239 (533)
....-.+.|+.+|+++. +.. ....+.++.....+.......+....+..+..+... ... .
T Consensus 154 ~~~~~~~~Sl~~fl~~~-l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~ls~~~~~~~~~~~ 231 (539)
T PLN02568 154 VCESGGGGSVGSFLRRG-LDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTLDLAAESEYRMFP 231 (539)
T ss_pred hhccCCCCcHHHHHHHH-HHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhccccccCcceecC
Confidence 00001223777777752 111 222222222222222222222222111111111100 000 0
Q ss_pred cceeeecCCcchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe-CCeeeecCEEEEccChhhHHHh-----
Q 009508 240 FDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQEL----- 313 (533)
Q Consensus 240 ~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~-~~~~~~ad~VV~a~~~~~~~~l----- 313 (533)
-......||++ .|++.|++.+. +.+|++|++|++|..++ +.+. |++ +++++.||+||+|+|+..+++-
T Consensus 232 g~~~~i~gG~~-~Li~~La~~L~--~~~I~ln~~V~~I~~~~--~~v~-V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~ 305 (539)
T PLN02568 232 GEEITIAKGYL-SVIEALASVLP--PGTIQLGRKVTRIEWQD--EPVK-LHFADGSTMTADHVIVTVSLGVLKAGIGEDS 305 (539)
T ss_pred CCeEEECCcHH-HHHHHHHhhCC--CCEEEeCCeEEEEEEeC--CeEE-EEEcCCCEEEcCEEEEcCCHHHHhhcccccc
Confidence 01122456654 77787876663 45799999999999886 3333 444 4558999999999999998852
Q ss_pred -hhhccccCchhHHhhccCcceeeEEEEEEeccCCCCCCCC------ceeeccCC-------CccceeeeccccccccCC
Q 009508 314 -IKNSILCNREEFLKVLNLASIDVVSVKLWFDKKVTVPNVS------NACSGFGD-------SLAWTFFDLNKIYDEHKD 379 (533)
Q Consensus 314 -l~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~~~~~~~~------~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 379 (533)
...++++ ....+.++.+......|+.+.|++++|..... ..+..... ...+++.......+ . .
T Consensus 306 i~F~P~LP-~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 382 (539)
T PLN02568 306 GLFSPPLP-DFKTDAISRLGFGVVNKLFVELSPRPDGSPEDVAKFPFLQMAFHRSDSEARHDKIPWWMRRTASICP-I-H 382 (539)
T ss_pred ceecCCCC-HHHHHHHHhcCCceeeEEEEEecCCCCCcccccccccceeeeecccchhhhcccccchhhccccccc-c-C
Confidence 1222222 12345688999999999999999998743110 00110000 00011100000000 0 1
Q ss_pred CCCeEEEEEecCC--CCCCCCCHHHHHHHHHHHHhhhhcCCCC---------------------CccccceeeeCC----
Q 009508 380 DSATVIQADFYHA--NELMPLKDDQVVAKAVSYLSKCIKDFST---------------------ATVMDHKIRRFP---- 432 (533)
Q Consensus 380 ~~~~v~~~~~~~~--~~~~~~~~~ei~~~~~~~l~~~~p~~~~---------------------~~v~~~~~~r~~---- 432 (533)
.+..++...+.+. ..+..++++++.+.+++.|.++|+.-.. ..+....+.+|.
T Consensus 383 ~~~~vL~~~~~G~~A~~~e~l~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~t~W~~dp~ 462 (539)
T PLN02568 383 KNSSVLLSWFAGKEALELEKLSDEEIIRGVQTTLSSFLKRRVAGLGSQSHPLCNGGASSNDGSRWKFVKVLKSKWGTDPL 462 (539)
T ss_pred CCCCEEEEEeccHHHHHHHcCCHHHHHHHHHHHHHHHcCCcccCcccccccccccccccccccCCCCceEEeCCCCCCCc
Confidence 1233444434432 3455788999999999999999963210 123444444442
Q ss_pred --CCccccCCCcccc-CCCCCCC-------------CCceEEecccccCCCCCchhhHHHHHHHHHHHHHHHHhC
Q 009508 433 --KSLTHFFPGSYKY-MMRGFTS-------------FPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLG 491 (533)
Q Consensus 433 --~~~~~~~pg~~~~-~p~~~~~-------------~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~~~g 491 (533)
+++..+.||.... ......| .++|||||++++..++ ++|+||+.||.++|++|++.++
T Consensus 463 ~~GsYs~~~~g~~~~~~~~La~P~~~~~~~~~~~~~~~~l~FAGEat~~~~~-~Tv~GA~~SG~RaA~~i~~~~~ 536 (539)
T PLN02568 463 FLGSYSYVAVGSSGDDLDRMAEPLPRISDHDQAGGPPLQLLFAGEATHRTHY-STTHGAYFSGLREANRLLQHYK 536 (539)
T ss_pred cCCccCCCcCCCChhHHHHHhCccccccccccccCCCccEEEeecccCCCcc-chHHHHHHHHHHHHHHHHHHhc
Confidence 2334445665321 1112223 3479999999999888 8999999999999999999876
No 22
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.96 E-value=2.4e-27 Score=247.24 Aligned_cols=421 Identities=13% Similarity=0.091 Sum_probs=236.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC----------CcccccccccCCCcHHHHHHHhCCCC--CCccc-
Q 009508 50 IVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP----------DDISMQGFWYPFRNIFSLVDELGIKP--FTGWM- 116 (533)
Q Consensus 50 VvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~----------~~~G~~~~~~~~~~~~~~~~~lg~~~--~~~~~- 116 (533)
|||||||++||+||..|+++|++|+|||+++++||+ +|.|.+.+... ..+.++++.+|++. ...+.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~G~~fD~G~~~~~~~-~~~~~l~~~lg~~l~~~l~~~~ 79 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDDGFRFDTGPTVITMP-EALEELFALAGRDLADYVELVP 79 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecCCeEEecCCeEEccc-cHHHHHHHHcCCChhheEEEEE
Confidence 699999999999999999999999999999999999 67888776532 34667788888542 11111
Q ss_pred --c-cceecCCCceecccccccCCCCCCCcccc------hhhhhcCCCHHhhhhcch-hhHHhh--cCCCC--------c
Q 009508 117 --K-SAQYSEEGLEVEFPIFQDLNQLPTPLGTL------FYTQFSRLPLVDRLTSLP-LMAAVI--DFDNT--------D 176 (533)
Q Consensus 117 --~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~-~~~~~~--~~~~~--------~ 176 (533)
. ...+.++|..+..+ .+..++...+... .+..+-. ..... .. .....+ .+... .
T Consensus 80 ~~~~~~~~~~~g~~~~~~--~~~~~~~~~l~~~~p~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (502)
T TIGR02734 80 LDPFYRLCWEDGSQLDVD--NDQEELEAQIARFNPGDVAGYRRFLD--YAERV--YREGYRKLGYVPFLSPRDLLRADLP 153 (502)
T ss_pred CCCceEEECCCCCEEEec--CCHHHHHHHHHHhCcccHHHHHHHHH--HHHHH--HHHHHHHHhhCCCCCHHHHHhHhhH
Confidence 1 11222344332221 0100000000000 0000000 00000 00 000000 00000 0
Q ss_pred hhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcCCcceeeecCCcchhhHHH
Q 009508 177 VAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEP 256 (533)
Q Consensus 177 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~ 256 (533)
.........|+.+|++++. .++.+..++.. ....++..+.+.++...+. .... ......++.||+ ..++++
T Consensus 154 ~~~~~~~~~s~~~~~~~~~-~~~~l~~~l~~-~~~~~g~~p~~~~~~~~l~--~~~~----~~~g~~~~~gG~-~~l~~a 224 (502)
T TIGR02734 154 QLLALLAWRSLYSKVARFF-SDERLRQAFSF-HALFLGGNPFRTPSIYALI--SALE----REWGVWFPRGGT-GALVAA 224 (502)
T ss_pred hhhhccCcCCHHHHHHhhc-CCHHHHHHhcc-cceeeccCcccchHHHHHH--HHHH----hhceEEEcCCCH-HHHHHH
Confidence 0112235678889998864 44444555442 2234455666655443221 1111 112344677775 489999
Q ss_pred HHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCC-eeeecCEEEEccChhhHH-HhhhhccccCchhHHhhccCcc-
Q 009508 257 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLNLAS- 333 (533)
Q Consensus 257 l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~-~~~~ad~VV~a~~~~~~~-~ll~~~~~~~~~~~~~~~~l~~- 333 (533)
|.+.++++|++|+++++|++|..++ +++++|.+++ +++.||.||+|+++..+. .|++....+ ....+.++.+..
T Consensus 225 l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~s 301 (502)
T TIGR02734 225 MAKLAEDLGGELRLNAEVIRIETEG--GRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRR-RYPAARLSRKRPS 301 (502)
T ss_pred HHHHHHHCCCEEEECCeEEEEEeeC--CEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCccccc-cccccccccCCcC
Confidence 9999999999999999999999876 6667777654 579999999999987765 455433211 111223444443
Q ss_pred eeeEEEEEEec---cCCCCCCCCceeeccC--C------------Cccceee-eccccccccCCCCCeEEEEEec-CCC-
Q 009508 334 IDVVSVKLWFD---KKVTVPNVSNACSGFG--D------------SLAWTFF-DLNKIYDEHKDDSATVIQADFY-HAN- 393 (533)
Q Consensus 334 ~~~~~v~l~~~---~~~~~~~~~~~~~~~~--~------------~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~-~~~- 393 (533)
.+..++++.++ .++.....+.+++..+ . ...+.+. .++..++..++++.+++.+... +..
T Consensus 302 ~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~v~~~s~~dp~~aP~G~~~~~~~~~~~~~~ 381 (502)
T TIGR02734 302 PSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKELFDEIFRKGRLAEDPSLYLHRPTVTDPSLAPPGCENLYVLAPVPHLG 381 (502)
T ss_pred CeeeEEEEeeccccCcCCCcCceeEecCcCHHHHHHHHhcCCCCCCCCcEEEEcCCCCCCCCCCCCCccEEEEEeCCCCC
Confidence 35567788887 3332111223332111 0 0112222 2233445566666665433222 211
Q ss_pred ----CCCCCCHHHHHHHHHHHHhhh-hcCCCCCccccceee----------eCCCCccccCC--Cc-cccCCC-CCCCCC
Q 009508 394 ----ELMPLKDDQVVAKAVSYLSKC-IKDFSTATVMDHKIR----------RFPKSLTHFFP--GS-YKYMMR-GFTSFP 454 (533)
Q Consensus 394 ----~~~~~~~~ei~~~~~~~l~~~-~p~~~~~~v~~~~~~----------r~~~~~~~~~p--g~-~~~~p~-~~~~~~ 454 (533)
.|. ..++++.+.+++.+++. +|++++ .++...+. .+.++.+.+.+ .+ ...+|. ..++++
T Consensus 382 ~~~~~~~-~~k~~~~~~il~~l~~~~~p~l~~-~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~ 459 (502)
T TIGR02734 382 TADVDWS-VEGPRYRDRILAYLEERAIPGLRD-RIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKID 459 (502)
T ss_pred CCCCCcH-HHHHHHHHHHHHHHHHhcCCChhH-heEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCC
Confidence 122 23577899999999998 999864 45444333 12223232221 11 113443 357899
Q ss_pred ceEEecccccCCCCCchhhHHHHHHHHHHHHHHHHhCCCC
Q 009508 455 NLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGS 494 (533)
Q Consensus 455 ~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~~~g~~~ 494 (533)
|||+||+++++| +++.+++.||+.||+.|+++.+.++
T Consensus 460 gLyl~G~~~~pG---~Gv~g~~~sg~~~a~~il~~~~~~~ 496 (502)
T TIGR02734 460 NLYLVGAGTHPG---AGVPGVLGSAKATAKLMLGDLAPGP 496 (502)
T ss_pred CEEEeCCCCCCC---CCHHHHHHHHHHHHHHHHhhccCCC
Confidence 999999999775 4689999999999999999887544
No 23
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.96 E-value=5.2e-27 Score=225.30 Aligned_cols=407 Identities=16% Similarity=0.132 Sum_probs=228.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC----------CcccccccccCCCcHHHHHHHhCCCCCCc
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP----------DDISMQGFWYPFRNIFSLVDELGIKPFTG 114 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~----------~~~G~~~~~~~~~~~~~~~~~lg~~~~~~ 114 (533)
+...||||||||++||++|++|++.|++|+|+|+++++||| .+.|.+.+..+++.+..+.+++|+....-
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~~~~~~d~gG~~i~p~~~~~l~~~k~~gv~~~~f 84 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYINPTHDALLAYAKEFGVPLEPF 84 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEeccceeeccCCcccCccchhhhhhHHhcCCCCCce
Confidence 56789999999999999999999999999999999999999 34555555556677888899999984332
Q ss_pred cccc-ceecCCCceecccccccCCCCCCCcccchhhhhcCC--CHHhhhhcchhhHHhhcCCCCchhhhccCCccHHHH-
Q 009508 115 WMKS-AQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRL--PLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITAREL- 190 (533)
Q Consensus 115 ~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~- 190 (533)
..+. ......+..... |....... ..+... .+..+....+.+... ........+.+++.+|
T Consensus 85 i~~g~~~~~~~~~~~~~---------p~~~~~~~-~d~~~~~~~~~~~a~~~~~~~~~-----~t~~~~e~~~~~~~~W~ 149 (450)
T COG1231 85 IRDGDNVIGYVGSSKST---------PKRSLTAA-ADVRGLVAELEAKARSAGELDPG-----LTPEDRELDLESLAAWK 149 (450)
T ss_pred eccCccccccccccccc---------chhccchh-hhhcchhhhhhhhhhcccccCcc-----cCcchhhhhhHHHHhhh
Confidence 2211 111000000000 00000000 000000 000000000000000 0011122334445555
Q ss_pred ---HHHhCCCHHHHHHHHHHHHHhhcc-CCchhhhHHHHHHHHHHHH-HhhcCCcc----eeeecCCcchhhHHHHHHHH
Q 009508 191 ---FKQFGCSERLYRNVIGPLVQVGLF-APAEQCSAAATLGILYFII-LAHQKNFD----LVWCRGTLREKIFEPWMDSM 261 (533)
Q Consensus 191 ---l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~-~~~~~~~~----~~~~~g~~~~~l~~~l~~~l 261 (533)
.+. ++... .....++ .+..+.........++... .....+.. ...+.||++ .|.+++.+
T Consensus 150 ~~~~~~--~~~~~-------~a~~~~g~~~~~~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~~~GGmd-~la~Afa~-- 217 (450)
T COG1231 150 TSSLRG--LSRDP-------GARVSPGPIEPGDVSLLHDALPLRSASVVDRGIGGEIRTQMLQRLGGMD-QLAEAFAK-- 217 (450)
T ss_pred hccccc--cccCc-------cceeccCCCCcccccchhhhhhhhhhhhccccccccccchhhccCccHH-HHHHHHHH--
Confidence 111 11100 0011111 1222222211111111110 00111111 112237754 67777764
Q ss_pred HhcCCEEEcCceeeEEEeccCCceEEEEEeCC-eeeecCEEEEccChhhHHHhhhhccccCchhHHhhccCcceeeEEEE
Q 009508 262 RTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSVK 340 (533)
Q Consensus 262 ~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~-~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v~ 340 (533)
++|-.|+++++|.+|++++ +| +.|++.. +++.+|.||+|+|+..+.++.-.+.. ..+..+.++...+.+..|+.
T Consensus 218 -ql~~~I~~~~~V~rI~q~~-~g--V~Vt~~~~~~~~ad~~i~tiPl~~l~qI~f~P~l-~~~~~~a~~~~~y~~~~K~~ 292 (450)
T COG1231 218 -QLGTRILLNEPVRRIDQDG-DG--VTVTADDVGQYVADYVLVTIPLAILGQIDFAPLL-PAEYKQAAKGVPYGSATKIG 292 (450)
T ss_pred -HhhceEEecCceeeEEEcC-Ce--EEEEeCCcceEEecEEEEecCHHHHhhcccCCCC-CHHHHHHhcCcCcchheeee
Confidence 4578899999999999987 44 3466666 79999999999999999877766522 23444557778888899999
Q ss_pred EEeccCCCCCCCCceeec--c-CCCccceeeeccccccccCCCCCeEEEEEe-cC--CCCCCCCCHHHHHHHHHHHHhhh
Q 009508 341 LWFDKKVTVPNVSNACSG--F-GDSLAWTFFDLNKIYDEHKDDSATVIQADF-YH--ANELMPLKDDQVVAKAVSYLSKC 414 (533)
Q Consensus 341 l~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~--~~~~~~~~~~ei~~~~~~~l~~~ 414 (533)
+.|++++|.... .+.| + +.......++ ++ .+. .+.-|+...+ .+ +..+..+++++..+.++.++.++
T Consensus 293 v~f~rpFWee~~--~l~G~~~tD~~~~~i~~~-s~---~~~-~G~gVl~g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~ 365 (450)
T COG1231 293 VAFSRPFWEEAG--ILGGESLTDLGLGFISYP-SA---PFA-DGPGVLLGSYAFGDDALVIDALPEAERRQKVLARLAKL 365 (450)
T ss_pred eecCchhhhhcc--cCCceEeecCCcceEecC-cc---ccC-CCceEEEeeeeccccceeEecCCHHHHHHHHHHhHhhh
Confidence 999999997654 1222 1 1121111111 11 111 2222332222 22 34567899999999999999999
Q ss_pred hcCCCCCccccceeeeC-----CCC-ccccCCCccc-cCCCCCCCCCceEEecccccCCCCCchhhHHHHHHHHHHHHHH
Q 009508 415 IKDFSTATVMDHKIRRF-----PKS-LTHFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVV 487 (533)
Q Consensus 415 ~p~~~~~~v~~~~~~r~-----~~~-~~~~~pg~~~-~~p~~~~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il 487 (533)
||+.....+......+| ..+ +..+.||+.. .-|....+.++|+|||....+.++ +++|||++||++||.+|.
T Consensus 366 ~g~~a~~~f~~~~~~~W~~dpwt~G~~aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~~-Gw~eGAi~Sg~~AA~ei~ 444 (450)
T COG1231 366 FGDEAADPFDYGASVDWSKDPWTLGGTAAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEFG-GWLEGAIRSGQRAAAEIH 444 (450)
T ss_pred CChhhccccccceeeecccCCcCCccccccCCcccccccccccCCCCceEEeeeccccccc-chhHHHHHHHHHHHHHHH
Confidence 99643323333233333 222 3456667643 334555688999999955555787 899999999999999998
Q ss_pred HHhC
Q 009508 488 DYLG 491 (533)
Q Consensus 488 ~~~g 491 (533)
+.+.
T Consensus 445 ~~l~ 448 (450)
T COG1231 445 ALLS 448 (450)
T ss_pred Hhhc
Confidence 8764
No 24
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.95 E-value=4.5e-26 Score=236.43 Aligned_cols=426 Identities=16% Similarity=0.128 Sum_probs=230.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC----------CcccccccccC----CCc-HHHHHHHhCCCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP----------DDISMQGFWYP----FRN-IFSLVDELGIKPF 112 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~----------~~~G~~~~~~~----~~~-~~~~~~~lg~~~~ 112 (533)
+||||||||++||+||..|+++|++|+|||+++.+||+ +|.|.+.+.+. .++ +.+.+..++....
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLE 80 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCCEEEEecchhheecCCcccccHHHHHHHHcCCccc
Confidence 58999999999999999999999999999999999999 56677765432 222 4455665654311
Q ss_pred Ccccc--cceecCCCceecccccccCCCCCCCcccc------hhhhhcCC-C-HHh---hhhc-----chhh-HHhhcCC
Q 009508 113 TGWMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTL------FYTQFSRL-P-LVD---RLTS-----LPLM-AAVIDFD 173 (533)
Q Consensus 113 ~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l-~-~~~---~~~~-----~~~~-~~~~~~~ 173 (533)
..... ..+..++|..+... .+..++...+... .+..+-.. . ..+ .... ...+ .......
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~~--~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (493)
T TIGR02730 81 TIPDPVQIHYHLPNGLNVKVH--REYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHP 158 (493)
T ss_pred ccCCCccEEEECCCCeeEeee--cCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhch
Confidence 11111 11222334222111 1111000000000 00000000 0 000 0000 0000 0000000
Q ss_pred CCchhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhccC-CchhhhHHHHHHHHHHHHHhhcCCcceeeecCCcchh
Q 009508 174 NTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFA-PAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREK 252 (533)
Q Consensus 174 ~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 252 (533)
.....+..+...|+.++++++..++ .+..++.... ..++. ++.+.+.......+. ........++.||.. .
T Consensus 159 ~~~~~~~~~~~~s~~~~~~~~~~~~-~l~~~l~~~~-~~~~~~p~~~~p~~~~~~~~~-----~~~~~g~~~~~gG~~-~ 230 (493)
T TIGR02730 159 LACLGLAKYLPQNAGDIARRYIRDP-GLLKFIDIEC-FCWSVVPADQTPMINAGMVFS-----DRHYGGINYPKGGVG-Q 230 (493)
T ss_pred hhhhHHHHHhhccHHHHHHHhcCCH-HHHHHHHHHH-HhccCCCcccchhhhHHHhhc-----ccccceEecCCChHH-H
Confidence 0000111223467888888874444 4455554432 22332 334554432221111 111123456778864 8
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC-CeeeecCEEEEccChhhHH-HhhhhccccCchhHHhhcc
Q 009508 253 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQ-ELIKNSILCNREEFLKVLN 330 (533)
Q Consensus 253 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~-~~~~~ad~VV~a~~~~~~~-~ll~~~~~~~~~~~~~~~~ 330 (533)
++++|.+.++++|++|+++++|++|..++ +++.+|.+. ++++++|.||+|++++.+. +|++....+. .....++.
T Consensus 231 l~~~L~~~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~-~~~~~~~~ 307 (493)
T TIGR02730 231 IAESLVKGLEKHGGQIRYRARVTKIILEN--GKAVGVKLADGEKIYAKRIVSNATRWDTFGKLLKAENLPK-KEKNWQRN 307 (493)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeeEEEecC--CcEEEEEeCCCCEEEcCEEEECCChHHHHHHhCCccccch-hhHHHHhh
Confidence 99999999999999999999999999876 667777775 4579999999999988765 5765532211 11223344
Q ss_pred Ccce-eeEEEEEEeccCCCCC--CCCceeec-c---CCCccceeee-ccccccccCCCCCeEEEEEec-CCCCCC-----
Q 009508 331 LASI-DVVSVKLWFDKKVTVP--NVSNACSG-F---GDSLAWTFFD-LNKIYDEHKDDSATVIQADFY-HANELM----- 396 (533)
Q Consensus 331 l~~~-~~~~v~l~~~~~~~~~--~~~~~~~~-~---~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~-~~~~~~----- 396 (533)
+... +..++++.++.+..+. ..+..++. + .......+.. ++..++..++.+.+++.+... ....|.
T Consensus 308 ~~~s~s~~~~~l~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~ps~~dps~aP~G~~~i~~~~~~~~~~w~~~~~~ 387 (493)
T TIGR02730 308 YVKSPSFLSLHLGVKADVLPPGTECHHILLEDWTNLEKPQGTIFVSIPTLLDPSLAPEGHHIIHTFTPSSMEDWQGLSPK 387 (493)
T ss_pred ccCCCceEEEEEEecCccCCCCCCccEEecchhhccCCCCCeEEEEeCCCCCCCCCcCCcEEEEEecCCChhhccCCCcH
Confidence 4433 4667888888754221 11222211 1 1111122222 233445566666666543321 111111
Q ss_pred --CCCHHHHHHHHHHHHhhhhcCCCCCccccceeeeCCCCc----------cccCCCc----cccCCCCCCCCCceEEec
Q 009508 397 --PLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSL----------THFFPGS----YKYMMRGFTSFPNLFMAG 460 (533)
Q Consensus 397 --~~~~~ei~~~~~~~l~~~~p~~~~~~v~~~~~~r~~~~~----------~~~~pg~----~~~~p~~~~~~~~l~~aG 460 (533)
...++++.+.+++.+++++|++++ .++...+. .|..+ +...+.. ....|..+++++|||+||
T Consensus 388 ~y~~~k~~~~~~il~~l~~~~p~l~~-~I~~~~~~-TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G 465 (493)
T TIGR02730 388 DYEAKKEADAERIIDRLEKIFPGLDS-AIDYKEVG-TPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVG 465 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhh-cEEEEEee-CchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEec
Confidence 112566889999999999999864 55444333 11111 1101100 011144678999999999
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHHHHHHhC
Q 009508 461 DWITTRHGSWSQERSYVTGLEAANRVVDYLG 491 (533)
Q Consensus 461 ~~~~~g~~~~~iegA~~SG~~aA~~Il~~~g 491 (533)
+++.+| +++.+++.||+.||+.|++++|
T Consensus 466 ~~~~pG---~Gv~g~~~sG~~~a~~i~~~~~ 493 (493)
T TIGR02730 466 DSCFPG---QGLNAVAFSGFACAHRVAADLG 493 (493)
T ss_pred CcCCCC---CCHHHHHHHHHHHHHHHHhhcC
Confidence 999765 4689999999999999998754
No 25
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=99.95 E-value=4.4e-26 Score=218.44 Aligned_cols=403 Identities=18% Similarity=0.196 Sum_probs=225.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCCCCCC----------Cccccccccc-CCCcHHHHHHHhC-CCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDGNGFGSP----------DDISMQGFWY-PFRNIFSLVDELG-IKP 111 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G-~~V~vlE~~~~~GG~----------~~~G~~~~~~-~~~~~~~~~~~lg-~~~ 111 (533)
....+|||||||+|||+||.+|-+.| .+|+|+|+.+++||| ++.|++++++ ..+.+.++.++.| +..
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~~ielGAqwihG~~gNpVY~la~~~g~~~~ 98 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADGVIELGAQWIHGEEGNPVYELAKEYGDLKL 98 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCCeEeecceeecCCCCChHHHHHHHhCccce
Confidence 34458999999999999999999775 599999999999999 6889999998 6778999999887 221
Q ss_pred CCcc----cccceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCccH
Q 009508 112 FTGW----MKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITA 187 (533)
Q Consensus 112 ~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 187 (533)
.... ........+|..+ +..+. ..+.. +....... ........+.-|+
T Consensus 99 ~~~tg~~~~~~~~~~~~g~~V-----------~~~~~----~~~~~-----------~~~~~~~~--~r~~~~~~~~~Sv 150 (498)
T KOG0685|consen 99 LEVTGPAYVDNFHTRSNGEVV-----------PEELL----DELNE-----------ITVTLSDK--LREAEIAHDEGSV 150 (498)
T ss_pred eccCCccccceeEEEecCccC-----------cHHHH----HHHHH-----------HHHhhhhh--cccccccCccccH
Confidence 1100 0111111122111 11000 00000 00000000 0000011234455
Q ss_pred HHHHHH-----h--CC----CHHHHHHHHHHHHHhhccC----CchhhhHHHHHHHHHHHHHhhcCCcceeeecCCcchh
Q 009508 188 RELFKQ-----F--GC----SERLYRNVIGPLVQVGLFA----PAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREK 252 (533)
Q Consensus 188 ~~~l~~-----~--~~----~~~~~~~~~~~~~~~~~~~----~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 252 (533)
++++++ . .. +..+...+++.+....... +.++++...+ ..+.. ..+ .....|...|+ ..
T Consensus 151 G~~ln~~~~~~~~~~e~~~~~k~l~~~~~~~~~k~e~~~~~~d~l~evs~~~~---~ey~~-~~g-e~~~~~~~kGy-~~ 224 (498)
T KOG0685|consen 151 GEYLNSEFWDELRGPENPEIDKTLAEEILNVYFKVECSITGADNLSEVSLRAL---LEYTE-CPG-EELLIWNKKGY-KR 224 (498)
T ss_pred HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHheeeeccCchhhhhhhhc---cceee-cCc-hhhheechhHH-HH
Confidence 655553 0 00 1222333343333332222 2223332211 11110 001 01122333332 24
Q ss_pred hHHHHHHHHHh----cC--CEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhhc--cccCchh
Q 009508 253 IFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNS--ILCNREE 324 (533)
Q Consensus 253 l~~~l~~~l~~----~G--~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~--~~~~~~~ 324 (533)
+.+-|.+.+.+ +| .+++++++|.+|..++ .+.+..-..+++++.||+||++++...+++-.... |..+...
T Consensus 225 iL~~l~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~-~~~v~l~c~dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~~K 303 (498)
T KOG0685|consen 225 ILKLLMAVIPAQNIELGLWKRIHLNTRVENINWKN-TGEVKLRCSDGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPAEK 303 (498)
T ss_pred HHHHHhccCCCcchhcCchhhhcccccceeeccCC-CCcEEEEEeCCcEEeccEEEEEeechhhhhhhhhhcCCCCCHHH
Confidence 55545443321 22 4566779999999885 45555445567799999999999999998744443 1112233
Q ss_pred HHhhccCcceeeEEEEEEeccCCCCCCCCc-eeeccCCC-------c-----cceeeeccccccccCCCCCeEEEEEecC
Q 009508 325 FLKVLNLASIDVVSVKLWFDKKVTVPNVSN-ACSGFGDS-------L-----AWTFFDLNKIYDEHKDDSATVIQADFYH 391 (533)
Q Consensus 325 ~~~~~~l~~~~~~~v~l~~~~~~~~~~~~~-~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 391 (533)
.++|..+......|+++-|.+++|+..-.. .+...++. . ....|.+... ...++...+.+
T Consensus 304 ~~AIe~lgfGtv~KiFLE~E~pfwp~~~~~i~~lw~~e~l~e~r~~~~~w~~~~~~f~~v~~-------~~~vL~gWiaG 376 (498)
T KOG0685|consen 304 QRAIERLGFGTVNKIFLEFEEPFWPSDWNGIQLLWLDEDLEELRSTLDAWEEDIMGFQPVSW-------APNVLLGWIAG 376 (498)
T ss_pred HHHHHhccCCccceEEEEccCCCCCCCCceeEEEEecCcHHHHhhhhHHHHhhceEEEEcCc-------chhhhheeccC
Confidence 456999999999999999999998643111 12221111 0 1112222111 12444444444
Q ss_pred C--CCCCCCCHHHHHHHHHHHHhhhhcCCCCCccccceeeeC--------CCCccccCCCcccc------CCC---CCCC
Q 009508 392 A--NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRF--------PKSLTHFFPGSYKY------MMR---GFTS 452 (533)
Q Consensus 392 ~--~~~~~~~~~ei~~~~~~~l~~~~p~~~~~~v~~~~~~r~--------~~~~~~~~pg~~~~------~p~---~~~~ 452 (533)
. ..+.+++++++.+.+...|++++++.. -+...++.|. +++|.+..+|+... .|. ..++
T Consensus 377 ~~~~~me~lsdEev~e~~~~~lr~fl~n~~--iP~p~kilRs~W~snp~frGSYSY~svgs~~~d~~~~a~p~p~~~~~~ 454 (498)
T KOG0685|consen 377 REARHMETLSDEEVLEGLTKLLRKFLKNPE--IPKPKKILRSQWISNPFFRGSYSYRSVGSDGSDTGALALPLPLTLVTG 454 (498)
T ss_pred CcceehhhCCHHHHHHHHHHHHHHhcCCCC--CCCchhhhhhcccCCCccCceeeEeeccccccccchhhccCCccccCC
Confidence 3 345689999999999999999997532 1122223322 23344444443221 111 1235
Q ss_pred CCceEEecccccCCCCCchhhHHHHHHHHHHHHHHHHhCC
Q 009508 453 FPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGD 492 (533)
Q Consensus 453 ~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~~~g~ 492 (533)
-+.|.|||++++..+. .+++||++||+|.|++|++.+..
T Consensus 455 ~p~I~FAGEaThr~~Y-sTthGA~~SG~REA~RL~~~y~~ 493 (498)
T KOG0685|consen 455 RPQILFAGEATHRTFY-STTHGAVLSGWREADRLLEHYES 493 (498)
T ss_pred CceEEEccccccccce-ehhhhhHHhhHHHHHHHHHHHHh
Confidence 5789999999998887 89999999999999999997653
No 26
>PLN02976 amine oxidase
Probab=99.95 E-value=1.6e-25 Score=240.95 Aligned_cols=234 Identities=18% Similarity=0.178 Sum_probs=151.6
Q ss_pred ecCCcchhhHHHHHHHHHhcCCEEEcCceeeEEEecc--------CCceEEEEEe-CCeeeecCEEEEccChhhHHH--h
Q 009508 245 CRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDE--------ERCCISDVVC-GKETYSAGAVVLAVGISTLQE--L 313 (533)
Q Consensus 245 ~~g~~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~--------~~~~v~~v~~-~~~~~~ad~VV~a~~~~~~~~--l 313 (533)
..||++ .|++.|++.+ .|++|++|++|.... +++.+ .|++ ++.++.||+||+|+|+..+.. +
T Consensus 931 IkGGYq-qLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~dGV-tVtTsDGetftADaVIVTVPLGVLKag~I 1003 (1713)
T PLN02976 931 IKGGYS-NVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSRKKV-KVSTSNGSEFLGDAVLITVPLGCLKAETI 1003 (1713)
T ss_pred eCCCHH-HHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCCCcE-EEEECCCCEEEeceEEEeCCHHHhhhccc
Confidence 457754 7777777543 599999999999841 01223 3444 455899999999999998873 2
Q ss_pred hhhccccCchhH-HhhccCcceeeEEEEEEeccCCCCCCCCceeeccCC----Ccc--ceeeeccccccccCCCCCeEEE
Q 009508 314 IKNSILCNREEF-LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGD----SLA--WTFFDLNKIYDEHKDDSATVIQ 386 (533)
Q Consensus 314 l~~~~~~~~~~~-~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~v~~ 386 (533)
...+++ +... ..++.+.+....|+.+.|+.+||..... ++|... ..+ +.+++.. ...+..++.
T Consensus 1004 ~FsPPL--Pe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d~d--~FG~s~edtdlrG~~~~~wnlr------~psG~pVLV 1073 (1713)
T PLN02976 1004 KFSPPL--PDWKYSSIQRLGFGVLNKVVLEFPEVFWDDSVD--YFGATAEETDLRGQCFMFWNVK------KTVGAPVLI 1073 (1713)
T ss_pred ccCCcc--cHHHHHHHHhhccccceEEEEEeCCccccCCCC--ccccccccCCCCceEEEeccCC------CCCCCCEEE
Confidence 222222 2333 4588899999999999999999854321 233211 111 1111111 112223443
Q ss_pred EEecCC--CCCCCCCHHHHHHHHHHHHhhhhcCCCCCccccceeeeCCC------CccccCCCccc-cCCCCCCCCCc-e
Q 009508 387 ADFYHA--NELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPK------SLTHFFPGSYK-YMMRGFTSFPN-L 456 (533)
Q Consensus 387 ~~~~~~--~~~~~~~~~ei~~~~~~~l~~~~p~~~~~~v~~~~~~r~~~------~~~~~~pg~~~-~~p~~~~~~~~-l 456 (533)
..+.+. ..+..++++++.+.+++.|.++||+.....+....+.+|.. +|..+.||... .......|+.| |
T Consensus 1074 afv~G~aAreiEsLSDEE~Ve~ALe~LrKlFG~~~iPdPv~~vvTrWssDPySrGSYSy~~PGs~~~d~d~LAePVggRL 1153 (1713)
T PLN02976 1074 ALVVGKAAIDGQSMSSSDHVNHALMVLRKLFGEALVPDPVASVVTDWGRDPFSYGAYSYVAIGASGEDYDILGRPVENCL 1153 (1713)
T ss_pred EEeccHhHHHHhhCCHHHHHHHHHHHHHHHcCcccccCcceeEEecCCCCCCcCccccCCCCCCCchHHHHHhCCCCCcE
Confidence 333332 34556789999999999999999853212455555565532 23344566532 12223456655 9
Q ss_pred EEecccccCCCCCchhhHHHHHHHHHHHHHHHHhCCCCCc
Q 009508 457 FMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFS 496 (533)
Q Consensus 457 ~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~~~g~~~~~ 496 (533)
||||++++..++ ++|+||+.||.+||++|++.+..++..
T Consensus 1154 FFAGEATS~~~p-GTVHGAIeSG~RAA~eIL~~L~~G~~~ 1192 (1713)
T PLN02976 1154 FFAGEATCKEHP-DTVGGAMMSGLREAVRIIDILNTGNDY 1192 (1713)
T ss_pred EEEehhhhCCCc-chHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 999999998888 899999999999999999999876665
No 27
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.93 E-value=8.4e-26 Score=232.83 Aligned_cols=224 Identities=21% Similarity=0.215 Sum_probs=142.0
Q ss_pred HHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHH--hhhhccccCchhHHhhccCc
Q 009508 255 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE--LIKNSILCNREEFLKVLNLA 332 (533)
Q Consensus 255 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~--ll~~~~~~~~~~~~~~~~l~ 332 (533)
..+...++..|++|++|++|++|+.++ +.+..+..++++++||+||+|+|+..+.+ +.+..+ ....+.++.+.
T Consensus 213 ~~~~~~~~~~g~~i~l~~~V~~I~~~~--~~v~v~~~~g~~~~ad~VI~a~p~~~l~~i~~~p~l~---~~~~~a~~~~~ 287 (450)
T PF01593_consen 213 LALALAAEELGGEIRLNTPVTRIERED--GGVTVTTEDGETIEADAVISAVPPSVLKNILLLPPLP---EDKRRAIENLP 287 (450)
T ss_dssp HHHHHHHHHHGGGEESSEEEEEEEEES--SEEEEEETTSSEEEESEEEE-S-HHHHHTSEEESTSH---HHHHHHHHTEE
T ss_pred HHHHHHHhhcCceeecCCcceeccccc--cccccccccceEEecceeeecCchhhhhhhhhccccc---ccccccccccc
Confidence 334444566688999999999999997 66665566667999999999999999985 333321 11234568888
Q ss_pred ceeeEEEEEEeccCCCCCCC-CceeeccCC-CccceeeeccccccccCCCCCeEEEEEecCC--CCCCCCCHHHHHHHHH
Q 009508 333 SIDVVSVKLWFDKKVTVPNV-SNACSGFGD-SLAWTFFDLNKIYDEHKDDSATVIQADFYHA--NELMPLKDDQVVAKAV 408 (533)
Q Consensus 333 ~~~~~~v~l~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~ei~~~~~ 408 (533)
+.+..++.+.++.++|.... ...+...+. .....+.+.+...+. .++.++...+... ..+..++++++.+.++
T Consensus 288 ~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~ 364 (450)
T PF01593_consen 288 YSSVSKVFLGFDRPFWPPDIDFFGILYSDGFSPIGYVSDPSKFPGR---PGGGVLTSYVGGPDAPEWDDLSDEEILERVL 364 (450)
T ss_dssp EEEEEEEEEEESSGGGGSTTTESEEEEESSTSSEEEEEEECCTTSC---TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHH
T ss_pred cCcceeEEEeeecccccccccccceecccCccccccccccccCccc---ccCCcceeeeeccccchhcccchhhhHHHHH
Confidence 88888999999999986531 111211111 111112222221111 2333333222221 3566788999999999
Q ss_pred HHHhhhhcCCCCCccccceeeeCCC-C-----ccccCCCcc-ccCCCCCCCC-CceEEecccccCCCCCchhhHHHHHHH
Q 009508 409 SYLSKCIKDFSTATVMDHKIRRFPK-S-----LTHFFPGSY-KYMMRGFTSF-PNLFMAGDWITTRHGSWSQERSYVTGL 480 (533)
Q Consensus 409 ~~l~~~~p~~~~~~v~~~~~~r~~~-~-----~~~~~pg~~-~~~p~~~~~~-~~l~~aG~~~~~g~~~~~iegA~~SG~ 480 (533)
++|++++|.....++....+.+|.. . +..+.++.. ..++....++ +||||||+|++++++ +++++|+.||+
T Consensus 365 ~~L~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~~~~~-~~~~gA~~sG~ 443 (450)
T PF01593_consen 365 DDLRKILPGASIPDPIDITVTRWSRDPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTSPGYP-GGIEGAILSGR 443 (450)
T ss_dssp HHHHHHHTTGGGGEESEEEEEECTTSTTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGSSSST-TSHHHHHHHHH
T ss_pred HHhhhccccccccccccccccccccccccccccccccccccccccccccCCcceEEEEeecccCCCCC-CcHHHHHHHHH
Confidence 9999999951112333444455543 2 223333432 1344455676 799999999998887 79999999999
Q ss_pred HHHHHHH
Q 009508 481 EAANRVV 487 (533)
Q Consensus 481 ~aA~~Il 487 (533)
+||++||
T Consensus 444 ~aA~~il 450 (450)
T PF01593_consen 444 RAAEEIL 450 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999986
No 28
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.93 E-value=1.9e-23 Score=196.94 Aligned_cols=414 Identities=14% Similarity=0.144 Sum_probs=261.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCe--EEEEcCCCCCCCC-----------CcccccccccCCC---cHHHHHHHhC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFD--VTVLDDGNGFGSP-----------DDISMQGFWYPFR---NIFSLVDELG 108 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~--V~vlE~~~~~GG~-----------~~~G~~~~~~~~~---~~~~~~~~lg 108 (533)
...++|+|||||++||++||+|++++-+ |+|+|+++|+||. ++.|+..+....+ .+.+++.++|
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLG 88 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLG 88 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcC
Confidence 4567999999999999999999999654 5669999999999 4556665554333 5788999999
Q ss_pred CCCCCcccc-------cceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhc
Q 009508 109 IKPFTGWMK-------SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRK 181 (533)
Q Consensus 109 ~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (533)
+++.....+ ..+....+ ....+|..+....+.. .-++ .+.-.+.++..... . +.-..
T Consensus 89 l~~e~~~i~~~~paaknr~l~~~~---------~L~~vP~sl~~s~~~~--l~p~-~k~L~~a~l~e~fr--~--~~~~~ 152 (491)
T KOG1276|consen 89 LEDELQPIDISHPAAKNRFLYVPG---------KLPTVPSSLVGSLKFS--LQPF-GKPLLEAFLRELFR--K--KVSDP 152 (491)
T ss_pred ccceeeecCCCChhhhheeeccCc---------ccccCCcccccccccc--cCcc-cchhHHHHHhhhcc--c--cCCCC
Confidence 984332211 11222222 1222333222111000 0011 11111222222111 1 11134
Q ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcC-----------------------
Q 009508 182 YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK----------------------- 238 (533)
Q Consensus 182 ~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~----------------------- 238 (533)
..++|+++|.++. +.++..+.++++++...++.++.++|+......++.....++.
T Consensus 153 ~~dESV~sF~~Rr-fG~eV~d~~isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~ 231 (491)
T KOG1276|consen 153 SADESVESFARRR-FGKEVADRLISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALS 231 (491)
T ss_pred CccccHHHHHHHh-hhHHHHHHHHHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhh
Confidence 5678999999873 5699999999999999999999999998777777665533221
Q ss_pred ------CcceeeecCCcchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCC--eeeecCEEEEccChhhH
Q 009508 239 ------NFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGISTL 310 (533)
Q Consensus 239 ------~~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~--~~~~ad~VV~a~~~~~~ 310 (533)
.+.....+||+ +.+.+++.+.|.+..+.|.++.++..+.....+++........ ..+..++++++.++...
T Consensus 232 ~~~~~e~~~~~sl~gGl-e~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl~~~~~~~~~~~~~~~~t~~~~k~ 310 (491)
T KOG1276|consen 232 AQAKKEKWTMFSLKGGL-ETLPKALRKSLGEREVSISLGLKLSGNSKSRSGNWSLTLVDHSGTQRVVVSYDAATLPAVKL 310 (491)
T ss_pred hhhcccccchhhhhhhH-hHhHHHHHHHhcccchhhhcccccccccccccCCceeEeEcCCCceeeeccccccccchHHh
Confidence 01111234665 5889999999988889999999999988765334444444433 25667777789999999
Q ss_pred HHhhhhccccCchhHHhhccCcceeeEEEEEEeccC-CCC-CCCCceeeccCC----CccceeeeccccccccCCCCCeE
Q 009508 311 QELIKNSILCNREEFLKVLNLASIDVVSVKLWFDKK-VTV-PNVSNACSGFGD----SLAWTFFDLNKIYDEHKDDSATV 384 (533)
Q Consensus 311 ~~ll~~~~~~~~~~~~~~~~l~~~~~~~v~l~~~~~-~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v 384 (533)
..+++.... .....+..+.+.++..|.+.|..+ ... -++++.+..... ...-.+||.. ..+...+.+ .+
T Consensus 311 a~ll~~~~~---sls~~L~ei~y~~V~vVn~~yp~~~~~~pl~GFG~LvPs~~~~~~~~LG~ifdS~-~Fp~~~~s~-~v 385 (491)
T KOG1276|consen 311 AKLLRGLQN---SLSNALSEIPYVPVAVVNTYYPKEKIDLPLQGFGLLVPSEPKNGFKTLGTIFDSM-LFPDRSPSP-KV 385 (491)
T ss_pred hhhccccch---hhhhhhhcCCCCceEEEEEeccCcccccccccceeeccCCCCCCCceeEEEeecc-cCCCCCCCc-eE
Confidence 999987521 223457888899988888888764 322 234444433111 0112244422 222222222 22
Q ss_pred EEEE---ecCCCCCCCCCHHHHHHHHHHHHhhhhcCCCCCccccceeeeCCCCccccCCCccccCCCCC---CC--CCce
Q 009508 385 IQAD---FYHANELMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF---TS--FPNL 456 (533)
Q Consensus 385 ~~~~---~~~~~~~~~~~~~ei~~~~~~~l~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~p~~~---~~--~~~l 456 (533)
.... .+........+.+++++.+.++|.+++.. .. .+...+++-|+++.|.|..|+++...... +. -.+|
T Consensus 386 tvm~gg~~~~n~~~~~~S~ee~~~~v~~alq~~Lgi-~~-~P~~~~v~l~~~ciPqy~vGh~~~le~a~~~l~~~~g~~l 463 (491)
T KOG1276|consen 386 TVMMGGGGSTNTSLAVPSPEELVNAVTSALQKMLGI-SN-KPVSVNVHLWKNCIPQYTVGHDDVLEAAKSMLTDSPGLGL 463 (491)
T ss_pred EEEecccccccCcCCCCCHHHHHHHHHHHHHHHhCC-CC-CcccccceehhhcccceecchHHHHHHHHHHHHhCCCCce
Confidence 2111 12233445678999999999999999953 32 35566666789999999999876544321 22 2489
Q ss_pred EEecccccCCCCCchhhHHHHHHHHHHHHHH
Q 009508 457 FMAGDWITTRHGSWSQERSYVTGLEAANRVV 487 (533)
Q Consensus 457 ~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il 487 (533)
+++|.|... . .+..+++||+++|.++.
T Consensus 464 ~l~G~~y~G-v---~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 464 FLGGNHYGG-V---SVGDCIESGRKTAVEVI 490 (491)
T ss_pred EeeccccCC-C---ChhHHHHhhHHHHHhhc
Confidence 999999963 2 68889999999987764
No 29
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=3.2e-23 Score=213.17 Aligned_cols=418 Identities=16% Similarity=0.108 Sum_probs=208.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC----------CcccccccccCCCcHHHHHHHhC-CCCCC-
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP----------DDISMQGFWYPFRNIFSLVDELG-IKPFT- 113 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~----------~~~G~~~~~~~~~~~~~~~~~lg-~~~~~- 113 (533)
+.+||||||||++||+||..|+++|++|+|+||++++||+ +|.|++.+. ......++++++ ++...
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~Gf~fd~G~~~~~--~~~~~~~~~~l~~l~~~~l 79 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGFRFDTGPSWYL--MPDPGPLFRELGNLDADGL 79 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccceEeccCcceee--cCchHHHHHHhccCcccce
Confidence 5689999999999999999999999999999999999998 566654433 334446677777 55321
Q ss_pred cc---cc-cceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhh----cchhhHHhhc---------CCCC-
Q 009508 114 GW---MK-SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLT----SLPLMAAVID---------FDNT- 175 (533)
Q Consensus 114 ~~---~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~---------~~~~- 175 (533)
.+ .. ...+.++|...... .+.......+...+ ....-.+...+. .+..+....- ....
T Consensus 80 ~~~~~~~~~~~~~~~g~~~~~~--~d~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (487)
T COG1233 80 DLLPPDPAYRVFLPDGDAIDVY--TDLEATAELLESLE--PGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTP 155 (487)
T ss_pred eeeccCCceeeecCCCCEEEec--CCHHHHHHHHHhhC--cccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccH
Confidence 11 11 11222333221110 00000000000000 000000000000 0000000000 0000
Q ss_pred --chhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcCCcceeeecCCcchhh
Q 009508 176 --DVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKI 253 (533)
Q Consensus 176 --~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l 253 (533)
...+......+..+++... +..+.....+........ ..+...++. ..+. ..........+++||++ .|
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~~~-~~p~~~~a~---~~~~---~~~~~~~G~~~p~GG~~-al 226 (487)
T COG1233 156 ERLLRLLGFSLTSALDFFRGR-FGSELLRALLAYSAVYGG-APPSTPPAL---YLLL---SHLGLSGGVFYPRGGMG-AL 226 (487)
T ss_pred HHHHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHhcC-CCCCchhHH---HHHH---HHhcccCCeeeeeCCHH-HH
Confidence 0011122334555666655 444444444433222222 333333311 1111 11223345567889976 89
Q ss_pred HHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCe-eeecCEEEEccChhhHHHhhhhccccCchhHHhhcc-C
Q 009508 254 FEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE-TYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN-L 331 (533)
Q Consensus 254 ~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~-~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~-l 331 (533)
+++|++.++++|++|+++++|++|..++ |+.+++.+..+ .+++|.||++..+.....+.+.... .+.... .
T Consensus 227 ~~aL~~~~~~~Gg~I~~~~~V~~I~v~~--g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~~~-----~~~~~~~~ 299 (487)
T COG1233 227 VDALAELAREHGGEIRTGAEVSQILVEG--GKGVGVRTSDGENIEADAVVSNADPALLARLLGEARR-----PRYRGSYL 299 (487)
T ss_pred HHHHHHHHHHcCCEEECCCceEEEEEeC--CcceEEeccccceeccceeEecCchhhhhhhhhhhhh-----hccccchh
Confidence 9999999999999999999999999987 65556666554 8999999999998555555544211 000111 1
Q ss_pred cceeeEEEEEEeccCCCCCCCCceeeccC------CC----cc---ce-eeeccccccccCCCCCeEEEEEe--cCCCCC
Q 009508 332 ASIDVVSVKLWFDKKVTVPNVSNACSGFG------DS----LA---WT-FFDLNKIYDEHKDDSATVIQADF--YHANEL 395 (533)
Q Consensus 332 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~------~~----~~---~~-~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~ 395 (533)
+..+.....+.++........+..++..+ .. .+ +. +..++..++..++.+.+.+...+ .+....
T Consensus 300 ~~~~al~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ps~~Dps~AP~G~~~~~~~~~~~~~~~~ 379 (487)
T COG1233 300 KSLSALSLYLGLKGDLLPLAHHTTILLGDTREQIEEAFDDRAGRPPPLYVSIPSLTDPSLAPEGKHSTFAQLVPVPSLGD 379 (487)
T ss_pred hhhHHHHhccCCCCCCcchhhcceEecCCcHHHHHHHhhhhcCCCCceEEeCCCCCCCccCCCCCcceeeeeeecCcCCC
Confidence 11111122233333211111111121111 00 00 11 22344556667776655111111 111122
Q ss_pred CCCCHHHHHHHHHHHHhhhhcCCCCCccccceeeeCCCC-----------cccc--C-CCccccCCCC-CCCCCceEEec
Q 009508 396 MPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKS-----------LTHF--F-PGSYKYMMRG-FTSFPNLFMAG 460 (533)
Q Consensus 396 ~~~~~~ei~~~~~~~l~~~~p~~~~~~v~~~~~~r~~~~-----------~~~~--~-pg~~~~~p~~-~~~~~~l~~aG 460 (533)
.+..++++.+. +..+++..|++++ .++...+. .+.. .+.. + ......+|.. .++++|||++|
T Consensus 380 ~~~~~~~~~~~-~~~~~~~~p~~~~-~iv~~~~~-tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~G 456 (487)
T COG1233 380 YDELKESLADA-IDALEELAPGLRD-RIVAREVL-TPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVG 456 (487)
T ss_pred hHHHHHHHHHH-HHHHhhcCCCccc-ceeEEEEe-ChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeC
Confidence 22334555555 5678999999875 44444333 1111 1110 1 1122234444 58999999999
Q ss_pred ccccCCCCCchhhHHHHHHHHHHHHHHHHhC
Q 009508 461 DWITTRHGSWSQERSYVTGLEAANRVVDYLG 491 (533)
Q Consensus 461 ~~~~~g~~~~~iegA~~SG~~aA~~Il~~~g 491 (533)
+++++|- ++.++..++..++..+....+
T Consensus 457 a~t~PG~---Gv~g~~g~~~a~~~~~~~~~~ 484 (487)
T COG1233 457 ASTHPGG---GVPGVPGSAAAVALLIDLDRG 484 (487)
T ss_pred CcCCCCC---CcchhhhhHHHHHhhhccccc
Confidence 9998864 466666666666555554443
No 30
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.90 E-value=2.1e-21 Score=196.19 Aligned_cols=425 Identities=16% Similarity=0.139 Sum_probs=237.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC----CCeEEEEcCCCCCCCCCcc-----------cccccccCCCcHHHHHHHhC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQ----GFDVTVLDDGNGFGSPDDI-----------SMQGFWYPFRNIFSLVDELG 108 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~~-----------G~~~~~~~~~~~~~~~~~lg 108 (533)
...+++|+|||||++||+||++|++. |.+|+|+|+++.+||+++. |.+.+...+..++++++.+.
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~~~~y~~l~~ll~~ip 98 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREMENHFECLWDLFRSIP 98 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCccchHHHHHHHHHhcc
Confidence 34568999999999999999999995 6899999999999998321 12223344566777877763
Q ss_pred CCCCCc--cc-ccceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCc
Q 009508 109 IKPFTG--WM-KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSI 185 (533)
Q Consensus 109 ~~~~~~--~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (533)
-..... .. +...+...+..+ ...++....+.......-.++...+..+.+++. ...+.+++.
T Consensus 99 sle~~g~sv~dd~~~~~~~~p~~------s~~Rl~~~~g~~~d~~~~~L~~k~r~~Ll~l~l---------~~e~~Ld~~ 163 (576)
T PRK13977 99 SLEDPGASVLDEFYWFNKDDPNY------SKARLIHKRGEILDTDKFGLSKKDRKELLKLLL---------TPEEKLDDK 163 (576)
T ss_pred ccCCCCcccccceeeeecCCccc------ceeeEEcCCCCEEECcCCCCCHHHHHHHHHHhc---------cCHHHhCCc
Confidence 221111 11 111111111000 000111111111101111233333333322221 124567889
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhh---cCCcceeeecCCcchhhHHHHHHHHH
Q 009508 186 TARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAH---QKNFDLVWCRGTLREKIFEPWMDSMR 262 (533)
Q Consensus 186 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~l~~~l~~~l~ 262 (533)
+++||+....+.. ....+|.++ + ......|+.+....+.++...- .....+...+++..+.++..|.+.|+
T Consensus 164 tI~d~f~~~Ff~t-~Fw~~w~t~----F-aF~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le 237 (576)
T PRK13977 164 TIEDWFSPEFFET-NFWYYWRTM----F-AFEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLE 237 (576)
T ss_pred CHHHHHhhcCchh-HHHHHHHHH----H-CCchhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHH
Confidence 9999999855543 334454444 3 3347788887777666553211 11222334556667899999999999
Q ss_pred hcCCEEEcCceeeEEEec-c-CCceEEEEEeC--C--e---eeecCEEEEccChhhHHHhhhhcc--ccCc-------hh
Q 009508 263 TRGCEFLDGRRVTDFIYD-E-ERCCISDVVCG--K--E---TYSAGAVVLAVGISTLQELIKNSI--LCNR-------EE 324 (533)
Q Consensus 263 ~~G~~i~~~~~V~~I~~~-~-~~~~v~~v~~~--~--~---~~~ad~VV~a~~~~~~~~ll~~~~--~~~~-------~~ 324 (533)
++|++|++|++|++|..+ + +.+++.++... + + ....|.||+|+|...-..-+++.. ++.. .-
T Consensus 238 ~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~ns~~G~~~~p~~~~~~~~~~w~L 317 (576)
T PRK13977 238 DHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITESSTYGDMDTPAPLNRELGGSWTL 317 (576)
T ss_pred hCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccccccCCCCCCCCCCCCCCccHHH
Confidence 999999999999999986 2 12567777553 2 1 356899999999887665444431 1100 01
Q ss_pred HHhhc----cCc----------ceeeEEEEEEeccCC--------CCCCCC-c-----eeeccCCCccceeeeccccccc
Q 009508 325 FLKVL----NLA----------SIDVVSVKLWFDKKV--------TVPNVS-N-----ACSGFGDSLAWTFFDLNKIYDE 376 (533)
Q Consensus 325 ~~~~~----~l~----------~~~~~~v~l~~~~~~--------~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~ 376 (533)
++++. .++ .....+..+.++.+. ....+. + .+..+. ...|...-....++-
T Consensus 318 W~~la~~~~~fG~P~~F~~~~~~s~w~SfTvT~~~~~~~~~i~~~t~~~p~~g~~~tg~~vt~~-dS~W~~s~~v~~QP~ 396 (576)
T PRK13977 318 WKNIAAQSPEFGNPDKFCGDIPESNWESFTVTTKDPKILPYIERITGRDPGSGKTVTGGIVTFK-DSNWLMSITVNRQPH 396 (576)
T ss_pred HHHHHhcCccCCChhhhcCCcccceEEEEEEEcCCHHHHHHHHHHhCCCCCCCccccCceeEEe-cCCeeEEEEecCCCC
Confidence 11211 111 111112222222111 001111 1 111111 223443222233455
Q ss_pred cCCCCCeEEEEEecC----------CCCCCCCCHHHHHHHHHHHHhh---hhcCCCCCccccceeeeCCCCccccCCCcc
Q 009508 377 HKDDSATVIQADFYH----------ANELMPLKDDQVVAKAVSYLSK---CIKDFSTATVMDHKIRRFPKSLTHFFPGSY 443 (533)
Q Consensus 377 ~~~~~~~v~~~~~~~----------~~~~~~~~~~ei~~~~~~~l~~---~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~ 443 (533)
|...+..+..+..|+ .+++.+++.+||.++++-+|.- .++.+........ ....|+....|.|...
T Consensus 397 F~~Qp~d~~v~WgY~l~~~~~G~yvkKpm~~CtG~Ei~~E~l~Hl~~~~~~~~~i~~~~~~~i-p~~MP~ita~f~pR~~ 475 (576)
T PRK13977 397 FKNQPKNETVVWGYGLYPDRPGNYVKKPMRECTGEEILQELLYHLGVPEDKIEELAADSANTI-PVMMPYITSQFMPRAK 475 (576)
T ss_pred CCCCCCCcEEEEEEecccCCCCCccCCchhhCCHHHHHHHHHHhcCCchhhHHHHHhhcCceE-eeccchhhhhhCCCCC
Confidence 555444444444332 2456678899999999988722 2222221111112 2236777777888777
Q ss_pred ccCCCCCC-CCCceEEecccccCCCCC-chhhHHHHHHHHHHHHHHHHhC
Q 009508 444 KYMMRGFT-SFPNLFMAGDWITTRHGS-WSQERSYVTGLEAANRVVDYLG 491 (533)
Q Consensus 444 ~~~p~~~~-~~~~l~~aG~~~~~g~~~-~~iegA~~SG~~aA~~Il~~~g 491 (533)
..||.+.. +..||-|.|.++...... .++|.++++|+.|+..++.-..
T Consensus 476 gDRP~VvP~g~~Nla~iGqFvE~p~d~vft~eysvRta~~AVy~L~~~~~ 525 (576)
T PRK13977 476 GDRPLVVPEGSTNLAFIGQFAETPRDTVFTTEYSVRTAMEAVYTLLGVDR 525 (576)
T ss_pred CCCCCcCCCCcceeeeeeccccCCCCEEEEEehhhHHHHHHHHHHhCCCC
Confidence 77887764 457999999999763332 6899999999999999887644
No 31
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.88 E-value=2.7e-22 Score=178.04 Aligned_cols=210 Identities=16% Similarity=0.100 Sum_probs=133.1
Q ss_pred CCEEEcCceeeEEEeccCCceEEEEEeC--CeeeecCEEEEccChhhHHHhhhhccccCchhH-HhhccCcceeeEEEEE
Q 009508 265 GCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGISTLQELIKNSILCNREEF-LKVLNLASIDVVSVKL 341 (533)
Q Consensus 265 G~~i~~~~~V~~I~~~~~~~~v~~v~~~--~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~-~~~~~l~~~~~~~v~l 341 (533)
..+|+++++|+.|-..+ +. +.+.++ ++...+|.||+|+|...+..|+.......+... ..+..+.+.|...+.+
T Consensus 117 dL~V~~~~rVt~v~~~~-~~--W~l~~~~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~s~~l 193 (331)
T COG3380 117 DLTVVLETRVTEVARTD-ND--WTLHTDDGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCWSAVL 193 (331)
T ss_pred cchhhhhhhhhhheecC-Ce--eEEEecCCCcccccceEEEecCCCcchhhcCcccccchHHHHHhhccceehhHHHHHh
Confidence 46789999999998875 33 345553 347899999999999999988854322122222 3466777777666667
Q ss_pred EeccCCCCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecC--CCCCCCCCHHHHHHHHHHHHhhhhcCCC
Q 009508 342 WFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH--ANELMPLKDDQVVAKAVSYLSKCIKDFS 419 (533)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~ei~~~~~~~l~~~~p~~~ 419 (533)
.|..+...+.+. .+--+....|.-.+.++.. .. ..+.++.++..+ +....+.+++..++.+......+++.-.
T Consensus 194 g~~q~l~~P~~G--~~vdg~~laWla~d~sK~g--~~-p~~~~~vvqasp~wSr~h~~~~~e~~i~~l~aA~~~~~~~~~ 268 (331)
T COG3380 194 GYPQPLDRPWPG--NFVDGHPLAWLARDASKKG--HV-PDGEIWVVQASPDWSREHLDHPAEQVIVALRAAAQELDGDRL 268 (331)
T ss_pred cCCccCCCCCCC--cccCCCeeeeeeccccCCC--CC-CcCceEEEEeCchHHHHhhcCCHHHHHHHHHHhhhhccCCCC
Confidence 777665444333 2222345567655433321 11 122233333222 2344567788888666666666665322
Q ss_pred CCccccceeeeCCCCccccCCCccccCCCCCCCCCceEEecccccCCCCCchhhHHHHHHHHHHHHHHHHh
Q 009508 420 TATVMDHKIRRFPKSLTHFFPGSYKYMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYL 490 (533)
Q Consensus 420 ~~~v~~~~~~r~~~~~~~~~pg~~~~~p~~~~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~~~ 490 (533)
..+.+....+|+++.+....+.. +.......+||+||||++. +-+|||++||..+|++|++.+
T Consensus 269 -~~p~~s~~H~WrYA~P~~~~~~~---~L~ad~~~~l~~cGDwc~G----grVEgA~LSGlAaA~~i~~~L 331 (331)
T COG3380 269 -PEPDWSDAHRWRYAIPNDAVAGP---PLDADRELPLYACGDWCAG----GRVEGAVLSGLAAADHILNGL 331 (331)
T ss_pred -CcchHHHhhccccccccccccCC---ccccCCCCceeeecccccC----cchhHHHhccHHHHHHHHhcC
Confidence 25667778889988876554431 1122345789999999975 478999999999999998754
No 32
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.87 E-value=1.1e-20 Score=173.36 Aligned_cols=272 Identities=20% Similarity=0.188 Sum_probs=180.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC--------------Cccccccccc-CCCcHHHHHHHhC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP--------------DDISMQGFWY-PFRNIFSLVDELG 108 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~--------------~~~G~~~~~~-~~~~~~~~~~~lg 108 (533)
+...++|+|||+|++||+|||.|+++ ++|+|+|++.++||+ +|.|.+.... .|+++..+|+.+|
T Consensus 5 ~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~iG 83 (447)
T COG2907 5 PHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTIG 83 (447)
T ss_pred CCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHcC
Confidence 34568999999999999999999886 899999999999999 3444444443 7999999999999
Q ss_pred CCCCCcccccce-ecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCC---chhhhccCC
Q 009508 109 IKPFTGWMKSAQ-YSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNT---DVAWRKYDS 184 (533)
Q Consensus 109 ~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 184 (533)
+++......... .+..|+.|..- ..+ ...+ ..-..+ -..+++.++..++.|..+ +.+......
T Consensus 84 v~t~as~Msf~v~~d~gglEy~g~-----tgl----~~L~-aqk~n~---l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~ 150 (447)
T COG2907 84 VDTKASFMSFSVSLDMGGLEYSGL-----TGL----AGLL-AQKRNL---LRPRFPCMLAEILRFYRSDLAPSDNAGQGD 150 (447)
T ss_pred CCCcccceeEEEEecCCceeeccC-----CCc----cchh-hccccc---cchhHHHHHHHHHHHhhhhccchhhhcCCC
Confidence 997655443332 23344444320 000 0000 000000 112233444444444432 223344567
Q ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcC----Ccceeee-cCCcchhhHHHHHH
Q 009508 185 ITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK----NFDLVWC-RGTLREKIFEPWMD 259 (533)
Q Consensus 185 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~~-~g~~~~~l~~~l~~ 259 (533)
.|+.+||++.+++..+.+.++.|+....|.++..+++...+...+.++ ..++- +...+.. .|| +...++.|.
T Consensus 151 ~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~~f~-~nhGll~l~~rp~wrtV~gg-S~~yvq~la- 227 (447)
T COG2907 151 TTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFLVFT-DNHGLLYLPKRPTWRTVAGG-SRAYVQRLA- 227 (447)
T ss_pred ccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHHHHH-hccCceecCCCCceeEcccc-hHHHHHHHh-
Confidence 899999999999999999999999999999999988887766655433 22221 1122222 244 334444443
Q ss_pred HHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhhccccCchhHHhhccCcceeeEEE
Q 009508 260 SMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNLASIDVVSV 339 (533)
Q Consensus 260 ~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l~~~~~~~v 339 (533)
...+++|.++++|..|..-. +|+++ +..+|++-++|+||+|+.+..+..++.+.. +.+.+.+..+.+.....|
T Consensus 228 --a~~~~~i~t~~~V~~l~rlP-dGv~l-~~~~G~s~rFD~vViAth~dqAl~mL~e~s---p~e~qll~a~~Ys~n~aV 300 (447)
T COG2907 228 --ADIRGRIETRTPVCRLRRLP-DGVVL-VNADGESRRFDAVVIATHPDQALALLDEPS---PEERQLLGALRYSANTAV 300 (447)
T ss_pred --ccccceeecCCceeeeeeCC-CceEE-ecCCCCccccceeeeecChHHHHHhcCCCC---HHHHHHHHhhhhhhceeE
Confidence 33467899999999999887 56543 445577889999999999999999998863 234445677777655433
No 33
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.86 E-value=2.5e-19 Score=169.99 Aligned_cols=246 Identities=14% Similarity=0.071 Sum_probs=153.8
Q ss_pred eeecCCcchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCC-eeeecCEEEEccChhhHH-Hhhhhcccc
Q 009508 243 VWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQ-ELIKNSILC 320 (533)
Q Consensus 243 ~~~~g~~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~-~~~~ad~VV~a~~~~~~~-~ll~~~~~~ 320 (533)
.|+.||++ .+..++++.++++|++|.+++.|.+|..++ |++++|...+ .+++++.||+.+.+|.+- +|++....+
T Consensus 257 ~Yp~GG~G-avs~aia~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~LP 333 (561)
T KOG4254|consen 257 GYPRGGMG-AVSFAIAEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEALP 333 (561)
T ss_pred cCCCCChh-HHHHHHHHHHHhccceeeehhhhhheeccC--CeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccCC
Confidence 46889987 899999999999999999999999999997 9999998764 589999999988888765 888887543
Q ss_pred CchhHHhhccCccee-eE----EEEEEeccCCCCCCCCceee-ccC-------------------CCccceee-eccccc
Q 009508 321 NREEFLKVLNLASID-VV----SVKLWFDKKVTVPNVSNACS-GFG-------------------DSLAWTFF-DLNKIY 374 (533)
Q Consensus 321 ~~~~~~~~~~l~~~~-~~----~v~l~~~~~~~~~~~~~~~~-~~~-------------------~~~~~~~~-~~~~~~ 374 (533)
..- .++++.+++ .. ..++-....-..+.++..+. -++ +...-..+ -++.++
T Consensus 334 eef---~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~~~~H~~v~D~~~gl~s~~pvI~~siPS~lD 410 (561)
T KOG4254|consen 334 EEF---VIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDTQAHHRAVEDPRNGLASHRPVIELSIPSSLD 410 (561)
T ss_pred chh---hhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchHHHHHHHHhChhhcccccCCeEEEecccccC
Confidence 221 444444332 22 12222222222222221111 000 01111111 234556
Q ss_pred cccCCCCCeEEEEE-ecCCCC-------CCCCCHHHHHHHHHHHHhhhhcCCCCCccccceeee----------CCCCcc
Q 009508 375 DEHKDDSATVIQAD-FYHANE-------LMPLKDDQVVAKAVSYLSKCIKDFSTATVMDHKIRR----------FPKSLT 436 (533)
Q Consensus 375 ~~~~~~~~~v~~~~-~~~~~~-------~~~~~~~ei~~~~~~~l~~~~p~~~~~~v~~~~~~r----------~~~~~~ 436 (533)
+...+++++|+.+- .+.... +.+.-++++.+.+.+.+++++|+++. .++...+.. ..+++.
T Consensus 411 ptlappg~Hvl~lf~~~t~~~w~g~~~~eye~~K~~~ae~~~~~ie~l~Pgfss-sv~~~dvgTP~t~qr~l~~~~Gn~~ 489 (561)
T KOG4254|consen 411 PTLAPPGKHVLHLFTQYTPEEWEGGLKGEYETKKEAFAERVFSVIEKLAPGFSS-SVESYDVGTPPTHQRFLGRPGGNIF 489 (561)
T ss_pred CCcCCCCceEEEEeccCCccccccCCcccchHHHHHHHHHHHHHHHHHcCCccc-eEEEEecCCCchhhHHhcCCCCccc
Confidence 66777888877542 232222 23344678899999999999999875 455444331 122222
Q ss_pred ccCCCcc---ccCCCC-----CCCCCceEEecccccCCCCCchhhHHHHHHHHHHHHHHHHhCCCCCccccc
Q 009508 437 HFFPGSY---KYMMRG-----FTSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVDYLGDGSFSKIIP 500 (533)
Q Consensus 437 ~~~pg~~---~~~p~~-----~~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~~~g~~~~~~~~~ 500 (533)
....+.. ..+|.. ++|++|||+||+.+.+|- ++-++. |..+|...+.+.+.....+.+.
T Consensus 490 ~~~~~ld~g~l~~Pv~~~s~y~tPI~~LYlcGs~afPGg---GV~a~a--G~~~A~~a~~~~~~~~~l~nl~ 556 (561)
T KOG4254|consen 490 HGAMGLDQGYLHRPVMAWSNYSTPIPGLYLCGSGAFPGG---GVMAAA--GRLAAHSAILDRKLYSDLKNLD 556 (561)
T ss_pred CcccccccccccCCccccccCCCCCCceEEecCCCCCCC---Cccccc--hhHHHHHHhhhhhhHHHhhhhc
Confidence 2111211 123433 789999999999998864 344443 8999988888887655555544
No 34
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=99.80 E-value=1.6e-17 Score=166.90 Aligned_cols=248 Identities=13% Similarity=0.164 Sum_probs=154.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCc------------cccc-----------------ccccC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDD------------ISMQ-----------------GFWYP 96 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~------------~G~~-----------------~~~~~ 96 (533)
..+||||||+|++|+++|..|+++|++|+++|++++.||+.. .+.+ .+...
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~ 82 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMA 82 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeec
Confidence 469999999999999999999999999999999999999821 1110 00011
Q ss_pred CCcHHHHHHHhCCCCCCcccc--cceec-CCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCC
Q 009508 97 FRNIFSLVDELGIKPFTGWMK--SAQYS-EEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFD 173 (533)
Q Consensus 97 ~~~~~~~~~~lg~~~~~~~~~--~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 173 (533)
...+..++.+.++..+..+.. ..++. .+|... ++|..-... ..-+.+++.+|..+.+++.....+.
T Consensus 83 ~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~---------~vP~s~~~~--~~s~ll~l~eKr~l~kfl~~v~~~~ 151 (443)
T PTZ00363 83 SGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIH---------KVPATDMEA--LSSPLMGFFEKNRCKNFLQYVSNYD 151 (443)
T ss_pred CChHHHHHhhcCccceeeeEEeceEEEEecCCeEE---------ECCCCHHHH--hhCCCcchhhHHHHHHHHHHHHhhc
Confidence 233445555556654443321 11111 222211 122211111 1223455667777777766665554
Q ss_pred CCc-hhhhc--cCCccHHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHH--hhcCCcceeeecCC
Q 009508 174 NTD-VAWRK--YDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWCRGT 248 (533)
Q Consensus 174 ~~~-~~~~~--~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~g~ 248 (533)
..+ ..+.. ++..|+.+|++++++++...+ ++...+.........+.++...+..+..+.. ..++...+.|+.||
T Consensus 152 ~~~~~~~~~~~~d~~T~~d~L~~~~ls~~~~d-~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG 230 (443)
T PTZ00363 152 ENDPETHKGLNLKTMTMAQLYKKFGLEDNTID-FVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYG 230 (443)
T ss_pred cCChhhhcccCcccCCHHHHHHHhCCCHHHHH-HHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCC
Confidence 322 12333 356899999999999877644 3333333322222223334444444433332 33444445778888
Q ss_pred cchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC-CeeeecCEEEEccCh
Q 009508 249 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGI 307 (533)
Q Consensus 249 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~-~~~~~ad~VV~a~~~ 307 (533)
++ .|.+++.+.+...|++++++++|++|..++ ++++++|++. ++++.|+.||+....
T Consensus 231 ~g-~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~-~g~~~~V~~~~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 231 LG-GLPQAFSRLCAIYGGTYMLNTPVDEVVFDE-NGKVCGVKSEGGEVAKCKLVICDPSY 288 (443)
T ss_pred HH-HHHHHHHHHHHHcCcEEEcCCeEEEEEEcC-CCeEEEEEECCCcEEECCEEEECccc
Confidence 76 799999999999999999999999999875 4677778774 568999999986543
No 35
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.67 E-value=2.5e-15 Score=142.80 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=46.8
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCe-eeecCEEEEccChh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE-TYSAGAVVLAVGIS 308 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~-~~~ad~VV~a~~~~ 308 (533)
.+.+++.|.+++++.|++|+++++|.+|+.++ .. ..+.+.++ ++.||.+|+|+|..
T Consensus 110 A~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~--~~-f~l~t~~g~~i~~d~lilAtGG~ 166 (408)
T COG2081 110 ASPIVDALLKELEALGVTIRTRSRVSSVEKDD--SG-FRLDTSSGETVKCDSLILATGGK 166 (408)
T ss_pred hHHHHHHHHHHHHHcCcEEEecceEEeEEecC--ce-EEEEcCCCCEEEccEEEEecCCc
Confidence 45799999999999999999999999999985 33 34566555 89999999999944
No 36
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=99.66 E-value=4.8e-14 Score=138.48 Aligned_cols=416 Identities=15% Similarity=0.120 Sum_probs=212.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC----CCeEEEEcCCCCCCCCCcc------c-----ccccccCCCcHHHHHHHhC-CC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQ----GFDVTVLDDGNGFGSPDDI------S-----MQGFWYPFRNIFSLVDELG-IK 110 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~~------G-----~~~~~~~~~~~~~~~~~lg-~~ 110 (533)
.+++-|||+|+|+|+||.+|-+. |.+|+|||+.+..||.++. | ...+...+..++++++.+- ++
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~~~~~eclwdLls~IPSle 81 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMMEFHYECLWDLLSSIPSLE 81 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccccchhHHHHHHHHhCCCCC
Confidence 46789999999999999999886 5799999999999998431 2 2222234455677776662 22
Q ss_pred CCCcccccceecCCCceecccccccCCCCCCCcccchh-hhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCccHHH
Q 009508 111 PFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFY-TQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARE 189 (533)
Q Consensus 111 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 189 (533)
.........++..+... +. ....++...-|.... ..--.++..+++.+.+++.. .-..+.+.+++|
T Consensus 82 ~p~~SVlDe~~~~n~~~---p~-~s~~Rli~~~G~~~~~~~~~~Ls~k~r~eL~kL~l~---------~E~~L~~~~I~d 148 (500)
T PF06100_consen 82 DPGKSVLDEIYWFNKED---PN-YSKARLIDKRGQIVDTDSKFGLSEKDRMELIKLLLT---------PEEDLGDKRIED 148 (500)
T ss_pred CCCCcHHHHHHHhccCC---CC-CcceeeeccCCccccccCcCCCCHHHHHHHHHHhcC---------CHHHhCcccHHH
Confidence 11111111111111100 00 011122211111110 00112444444444443321 113456677777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcC--C-cceeeecCCcchhhHHHHHHHHHhcCC
Q 009508 190 LFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQK--N-FDLVWCRGTLREKIFEPWMDSMRTRGC 266 (533)
Q Consensus 190 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~-~~~~~~~g~~~~~l~~~l~~~l~~~G~ 266 (533)
|+...-+...+ -.+| ...++..+ -.|+.++..-+.++.-.-.. . ..+...+.+..+.++..|.+.|+++||
T Consensus 149 ~F~~~FF~SnF-W~~W----~T~FAFqp-WhSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV 222 (500)
T PF06100_consen 149 WFSESFFESNF-WYMW----STMFAFQP-WHSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGV 222 (500)
T ss_pred hcchhhhcCch-hHhH----HHhhccCc-chhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCCC
Confidence 77643232222 1122 22333222 33444444444443321111 1 112234456678999999999999999
Q ss_pred EEEcCceeeEEEeccCCc-e-EEEEEe--CCe--ee---ecCEEEEccChhhHHHhhhhccc--cCc-------hhHHhh
Q 009508 267 EFLDGRRVTDFIYDEERC-C-ISDVVC--GKE--TY---SAGAVVLAVGISTLQELIKNSIL--CNR-------EEFLKV 328 (533)
Q Consensus 267 ~i~~~~~V~~I~~~~~~~-~-v~~v~~--~~~--~~---~ad~VV~a~~~~~~~~ll~~~~~--~~~-------~~~~~~ 328 (533)
++++|++|+.|+.+.+++ + +..+.. +++ ++ .-|.|+++.|.-+...-.++..- +.. .-++++
T Consensus 223 ~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~t~~s~~G~~~~p~~~~~~~~~~W~LW~~l 302 (500)
T PF06100_consen 223 DFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSMTEGSTYGDNDTPPPLNKELGGSWSLWKNL 302 (500)
T ss_pred EEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCccccccccCCCCCCCCCCCCCCchHHHHHHH
Confidence 999999999999874222 2 222222 221 22 35888888887665544333211 000 001111
Q ss_pred c----cCc----------ceee-EEEEEEeccCC--------CCCCC------CceeeccCCCccceeeeccccccccCC
Q 009508 329 L----NLA----------SIDV-VSVKLWFDKKV--------TVPNV------SNACSGFGDSLAWTFFDLNKIYDEHKD 379 (533)
Q Consensus 329 ~----~l~----------~~~~-~~v~l~~~~~~--------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (533)
. .++ .... .+..+.++.+. ....+ .+.+..+. ...|...-....+|-|.+
T Consensus 303 a~k~~~FG~P~~F~~~~~~s~w~eSfTvT~~d~~~~~~i~~lt~~~p~~g~~~tGgliT~~-DS~WlmS~~i~~QP~F~~ 381 (500)
T PF06100_consen 303 AAKSPDFGNPEKFCTRIPESKWFESFTVTLKDPKFFDYIEKLTGNDPYSGKVGTGGLITFK-DSNWLMSITIPRQPHFPD 381 (500)
T ss_pred HhcCcCCCChhhhcCCcccceeEEEEEEEecChHHHHHHHHHHCCCCCcCccCcCceeEec-cCCeEEEEEECCCCccCC
Confidence 1 111 1111 22222332211 01111 11111111 233543322233455555
Q ss_pred CCCeEEEEEecC----------CCCCCCCCHHHHHHHHHHHHhhhh---cCCCCCccccceeeeCCCCccccCCCccccC
Q 009508 380 DSATVIQADFYH----------ANELMPLKDDQVVAKAVSYLSKCI---KDFSTATVMDHKIRRFPKSLTHFFPGSYKYM 446 (533)
Q Consensus 380 ~~~~v~~~~~~~----------~~~~~~~~~~ei~~~~~~~l~~~~---p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~ 446 (533)
.+..+..+..|+ .+++.+++.+||.++++.+|.--- ..+..... .......|+....|.|.....|
T Consensus 382 QP~dv~V~WgYgL~pd~~GnyVkKpM~eCtG~EIl~ElL~HLg~~~~~~~~~~~~~~-~tiP~~MP~its~fmpR~~gDR 460 (500)
T PF06100_consen 382 QPEDVQVFWGYGLFPDKEGNYVKKPMLECTGEEILTELLYHLGFPDDEIEELAKQST-NTIPCMMPYITSQFMPRAKGDR 460 (500)
T ss_pred CCCCeEEEEEEecccCCCCCccCCchhhCChHHHHHHHHHhcCCChhhhhHhhccCc-eEEEeccccchhhccCCCCCCC
Confidence 555554444432 245667888999999998873222 11110011 1112236777777888777788
Q ss_pred CCCCC-CCCceEEecccccCCCCC-chhhHHHHHHHHHH
Q 009508 447 MRGFT-SFPNLFMAGDWITTRHGS-WSQERSYVTGLEAA 483 (533)
Q Consensus 447 p~~~~-~~~~l~~aG~~~~~g~~~-~~iegA~~SG~~aA 483 (533)
|.+.+ +..||-|.|.++.....+ .++|.++++|+.|+
T Consensus 461 P~VvP~g~~NlafiGQFvE~p~D~vfT~EYSVRtA~~AV 499 (500)
T PF06100_consen 461 PQVVPEGSTNLAFIGQFVEIPRDTVFTVEYSVRTAQEAV 499 (500)
T ss_pred CCcCCCCcceeEEEEcccccCCCEEEEEeehhhhhhhhc
Confidence 87764 458999999999773332 68999999999886
No 37
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.65 E-value=5e-14 Score=143.93 Aligned_cols=200 Identities=13% Similarity=0.022 Sum_probs=107.0
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhhccccCchhHHhhcc
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 330 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~ 330 (533)
..++..|.+.++++|++|+.+++|++|+.++ +.++.+.++++++.+|+||+|+|.+... ++....... .+..
T Consensus 201 ~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~~~~~~a~~VV~a~G~~~~~-l~~~~g~~~-----pi~p 272 (416)
T PRK00711 201 QLFTQRLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTGGGVITADAYVVALGSYSTA-LLKPLGVDI-----PVYP 272 (416)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeCCcEEeCCEEEECCCcchHH-HHHHhCCCc-----ccCC
Confidence 3677888888888999999999999999876 5556677777789999999999998643 433210000 0111
Q ss_pred CcceeeEEEEEEeccCCCCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecCCCCCCCCCHHHHHHHHHHH
Q 009508 331 LASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSY 410 (533)
Q Consensus 331 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ei~~~~~~~ 410 (533)
... + .+.+..+.... .+...+. +... ...+ ...++.++..............+.+..+.+.+.
T Consensus 273 ~rg--~-~~~~~~~~~~~--~p~~~~~--~~~~-~~~~---------~~~~~~~~iG~~~~~~~~~~~~~~~~~~~l~~~ 335 (416)
T PRK00711 273 LKG--Y-SLTVPITDEDR--APVSTVL--DETY-KIAI---------TRFDDRIRVGGMAEIVGFDLRLDPARRETLEMV 335 (416)
T ss_pred ccc--e-EEEEecCCCCC--CCceeEE--eccc-CEEE---------eecCCceEEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 111 0 01111111110 0100000 0000 0001 001222221111111111122235567778888
Q ss_pred HhhhhcCCCCCccccceeeeCCCCccccCCCccccCCCCC-CCCCceEEecccccCCCCCchhhHHHHHHHHHHHHHHH
Q 009508 411 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 488 (533)
Q Consensus 411 l~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~p~~~-~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~ 488 (533)
+.++||.+.+..+...+.. ...++++. .|.+- .+.+|+|++..+.. + ++.-|..+|+..|+.|+.
T Consensus 336 ~~~~~P~l~~~~~~~~w~G-----~r~~t~D~---~PiIG~~~~~gl~~a~G~~g--~---G~~~ap~~g~~la~li~g 401 (416)
T PRK00711 336 VRDLFPGGGDLSQATFWTG-----LRPMTPDG---TPIVGATRYKNLWLNTGHGT--L---GWTMACGSGQLLADLISG 401 (416)
T ss_pred HHHHCCCcccccccceeec-----cCCCCCCC---CCEeCCcCCCCEEEecCCch--h---hhhhhhhHHHHHHHHHcC
Confidence 9999998765444333222 22233332 23211 13589999887763 2 456688899999998874
No 38
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.63 E-value=3.5e-14 Score=142.03 Aligned_cols=63 Identities=24% Similarity=0.282 Sum_probs=52.1
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhh
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 316 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~ 316 (533)
..++..|.+.+++.|++|+.+++|++|+.++ +.+.+|.++++.+.+|.||+|+|++... ++..
T Consensus 147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~--~~v~gv~~~~g~i~ad~vV~a~G~~s~~-l~~~ 209 (358)
T PF01266_consen 147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDG--GRVTGVRTSDGEIRADRVVLAAGAWSPQ-LLPL 209 (358)
T ss_dssp HHHHHHHHHHHHHTT-EEEESEEEEEEEEET--TEEEEEEETTEEEEECEEEE--GGGHHH-HHHT
T ss_pred cchhhhhHHHHHHhhhhccccccccchhhcc--cccccccccccccccceeEeccccccee-eeec
Confidence 4788999999999999999999999999987 7777788888889999999999998655 5544
No 39
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.57 E-value=1.1e-12 Score=133.51 Aligned_cols=199 Identities=12% Similarity=0.120 Sum_probs=106.2
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhhccccCchhHHhhccC
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL 331 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l 331 (533)
.+...+.+.+.++|++++.+++|++|+.++ ++.+.++.++++++.+++||+|++.+... +....... +
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~-~~~~~~v~t~~g~i~a~~vVvaagg~~~~-l~~~~g~~----------~ 251 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRD-GGRVIGVETTRGFIGAKKVGVAVAGHSSV-VAAMAGFR----------L 251 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcC-CCcEEEEEeCCceEECCEEEECCChhhHH-HHHHcCCC----------C
Confidence 466678888888999999999999998653 35566677777789999999999988643 22211000 0
Q ss_pred cceeeEEEEEEeccCCCCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecC-CCCCCCCCHHHHHHHHHHH
Q 009508 332 ASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYH-ANELMPLKDDQVVAKAVSY 410 (533)
Q Consensus 332 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~ei~~~~~~~ 410 (533)
...+.. ..+....+... .....+.. . ....++.+ ..++.++...... ........+.+..+.+++.
T Consensus 252 ~~~~~~-~~~~~~~~~~~-~~~~~~~~-~--~~~~y~~p--------~~~g~~~ig~~~~~~~~~~~~~~~~~~~~l~~~ 318 (407)
T TIGR01373 252 PIESHP-LQALVSEPLKP-IIDTVVMS-N--AVHFYVSQ--------SDKGELVIGGGIDGYNSYAQRGNLPTLEHVLAA 318 (407)
T ss_pred CcCccc-ceEEEecCCCC-CcCCeEEe-C--CCceEEEE--------cCCceEEEecCCCCCCccCcCCCHHHHHHHHHH
Confidence 000100 01111122110 00001110 0 01112211 1233333221111 1111122345678888999
Q ss_pred HhhhhcCCCCCccccceeeeCCCCccccCCCccccCCCCC-CCCCceEEecccccCCCCCchhhHHHHHHHHHHHHHHH
Q 009508 411 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF-TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 488 (533)
Q Consensus 411 l~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~p~~~-~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~ 488 (533)
+.++||.+.+..+... | .+...++|.. .|.+- .+.+|+|++..+... ++.-|..+|+..|+.|+.
T Consensus 319 ~~~~~P~l~~~~~~~~----w-~G~~~~t~D~---~PiIg~~~~~gl~~a~G~~g~-----G~~~ap~~G~~la~li~~ 384 (407)
T TIGR01373 319 ILEMFPILSRVRMLRS----W-GGIVDVTPDG---SPIIGKTPLPNLYLNCGWGTG-----GFKATPASGTVFAHTLAR 384 (407)
T ss_pred HHHhCCCcCCCCeEEE----e-ccccccCCCC---CceeCCCCCCCeEEEeccCCc-----chhhchHHHHHHHHHHhC
Confidence 9999998865433222 2 2233334433 23221 235899998877633 355577889999998874
No 40
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.56 E-value=4.6e-13 Score=131.67 Aligned_cols=232 Identities=13% Similarity=0.134 Sum_probs=130.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC-----------CcccccccccCCCcHHHHHHHh-CCCCCCc
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP-----------DDISMQGFWYPFRNIFSLVDEL-GIKPFTG 114 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~-----------~~~G~~~~~~~~~~~~~~~~~l-g~~~~~~ 114 (533)
++||+|||||++||++|+.|++.|.+|+|+|+++++||. .+.|.|.++.....+++++.++ ....
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~g~~~~~~G~h~f~t~~~~v~~~~~~~~~~~~--- 77 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDETILFHQYGPHIFHTNNQYVWDYISPFFELNN--- 77 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCCCceEEeecceeEecCcHHHHHHHHhhccccc---
Confidence 369999999999999999999999999999999999997 1345666666566666666665 2221
Q ss_pred ccccceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCccHHHHH---
Q 009508 115 WMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITARELF--- 191 (533)
Q Consensus 115 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l--- 191 (533)
+........+|..+.+|+ .......+.... ........+....... ......++++|.
T Consensus 78 ~~~~~~~~~~g~~~~~P~-----------~~~~i~~l~~~~--~~~~~~~~l~~~~~~~------~~~~~~~~~e~~d~~ 138 (377)
T TIGR00031 78 YQHRVLALYNNLDLTLPF-----------NFNQFRKLLGVK--DAQELQNFFNAQFKYG------DHVPLEELQEIADPD 138 (377)
T ss_pred eeEEEEEEECCeEEccCC-----------CHHHHHHhcccc--hHHHHHHHHHHHhhcc------cCCCCCCHHHHHHHH
Confidence 111122223444444432 100011111000 0011111111111100 011113345543
Q ss_pred HHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHh--hcCCcceeeecCCcchhhHHHHHHHHHhcCCEEE
Q 009508 192 KQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA--HQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFL 269 (533)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~ 269 (533)
.+. +++.+++.++.++....|+.++.++++.+....-..+... .+.+....+|++|. ..+.+.|+ +..+++|+
T Consensus 139 ~~~-~G~~lye~ff~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gy-t~~~~~ml---~~~~i~v~ 213 (377)
T TIGR00031 139 IQL-LYQFLYQKVYKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGY-TKLFEKML---DHPLIDVK 213 (377)
T ss_pred HHH-HHHHHHHHhccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccH-HHHHHHHH---hcCCCEEE
Confidence 332 4599999999999999999999999987653211111000 11222345677663 34544443 45589999
Q ss_pred cCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHH
Q 009508 270 DGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 270 ~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~ 311 (533)
+|+.++.++.++ ++ +...++.+. +.||.|.+...+-
T Consensus 214 l~~~~~~~~~~~--~~---~~~~~~~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 214 LNCHINLLKDKD--SQ---LHFANKAIR-KPVIYTGLIDQLF 249 (377)
T ss_pred eCCccceeeccc--cc---eeecccccc-CcEEEecCchHHH
Confidence 998777777543 32 222222333 8899998876554
No 41
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.55 E-value=3.3e-13 Score=139.05 Aligned_cols=56 Identities=16% Similarity=0.037 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 310 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~ 310 (533)
..++..|.+.++++|++|+.+++|++|+.. +. +.|.++++++.||+||+|++.+..
T Consensus 183 ~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~---~~-~~v~t~~g~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 183 GLLVRGLRRVALELGVEIHENTPMTGLEEG---QP-AVVRTPDGQVTADKVVLALNAWMA 238 (460)
T ss_pred HHHHHHHHHHHHHcCCEEECCCeEEEEeeC---Cc-eEEEeCCcEEECCEEEEccccccc
Confidence 467888999999999999999999999853 22 346667678999999999998854
No 42
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.54 E-value=2.9e-12 Score=130.55 Aligned_cols=59 Identities=20% Similarity=0.222 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEE-EEEeCC----eeeecCEEEEccChhhHH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCIS-DVVCGK----ETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~-~v~~~~----~~~~ad~VV~a~~~~~~~ 311 (533)
..++..|.+.+++.|++|+.+++|++|..++ +.+. .+..++ .++++|+||+|+|++...
T Consensus 197 ~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~--~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~ 260 (410)
T PRK12409 197 HKFTTGLAAACARLGVQFRYGQEVTSIKTDG--GGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRA 260 (410)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEcCCCCccceEecCEEEECCCcChHH
Confidence 3567788888889999999999999998765 4332 233332 378999999999999654
No 43
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=99.52 E-value=2.5e-12 Score=127.70 Aligned_cols=245 Identities=17% Similarity=0.238 Sum_probs=147.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCC---ccc--ccccc-------------------------c
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD---DIS--MQGFW-------------------------Y 95 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~---~~G--~~~~~-------------------------~ 95 (533)
..+||||+|.|+.-...|..|++.|++|+.+|+++.-||.. +.. ..++. .
T Consensus 3 ~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~ 82 (438)
T PF00996_consen 3 EEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLY 82 (438)
T ss_dssp SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEE
T ss_pred ccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhh
Confidence 57999999999999999999999999999999999999971 100 00000 0
Q ss_pred CCCcHHHHHHHhCCCCCCcccc--cceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCC
Q 009508 96 PFRNIFSLVDELGIKPFTGWMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFD 173 (533)
Q Consensus 96 ~~~~~~~~~~~lg~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 173 (533)
....+.+++-+-++..+..|.. ..++..++. ..++|..-... ..-+.+++.+|..+.+++.....++
T Consensus 83 a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~---------l~kVP~sr~dv--f~s~~lsl~eKR~lmkFl~~v~~~~ 151 (438)
T PF00996_consen 83 ARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGK---------LHKVPCSREDV--FKSKLLSLFEKRRLMKFLKFVANYE 151 (438)
T ss_dssp TTSHHHHHHHHCTGGGGSEEEEESEEEEEETTE---------EEE--SSHHHH--HC-TTS-HHHHHHHHHHHHHHHHGC
T ss_pred ccCHHHHHHHhCCcccceEEEEcceeEEEeCCE---------EeeCCCCHHHh--hcCCCccHHHHHHHHHHHHHHhhcc
Confidence 1122333333333333322211 111111111 11222221111 1224578889988888888887776
Q ss_pred CCch-hhh--ccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHH--hhcCCcceeeecCC
Q 009508 174 NTDV-AWR--KYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWCRGT 248 (533)
Q Consensus 174 ~~~~-~~~--~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~g~ 248 (533)
.... .+. .....++.++++.+++++...+-+...+ .........+.++...+..++.+.. +.++...+.||..|
T Consensus 152 ~~~~~~~~~~~~~~~~~~e~~~~f~L~~~~~~~i~hai-aL~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG 230 (438)
T PF00996_consen 152 EDDPSTHKGLDPEKKTFQELLKKFGLSENLIDFIGHAI-ALSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLYPLYG 230 (438)
T ss_dssp TTBGGGSTTG-TTTSBHHHHHHHTTS-HHHHHHHHHHT-S-SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-
T ss_pred cCCcchhhccccccccHHHHHHhcCCCHHHHHHHHHhh-hhccCcccccccHHHHHHHHHHHHHHHhccCCCCEEEEccC
Confidence 5432 223 3457899999999999877744433222 1111112223345566777776653 34556678889877
Q ss_pred cchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEc
Q 009508 249 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 304 (533)
Q Consensus 249 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a 304 (533)
.+ .|.+++.+...-.|+.+.+|++|.+|..++ +|++.+|.++++++.|++||..
T Consensus 231 ~G-ELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~-~g~~~gV~s~ge~v~~k~vI~d 284 (438)
T PF00996_consen 231 LG-ELPQAFCRLSAVYGGTYMLNRPIDEIVVDE-DGKVIGVKSEGEVVKAKKVIGD 284 (438)
T ss_dssp TT-HHHHHHHHHHHHTT-EEESS--EEEEEEET-TTEEEEEEETTEEEEESEEEEE
T ss_pred Cc-cHHHHHHHHhhhcCcEEEeCCccceeeeec-CCeEEEEecCCEEEEcCEEEEC
Confidence 66 799999998888899999999999999976 5888899999999999999964
No 44
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.50 E-value=1.1e-11 Score=126.27 Aligned_cols=55 Identities=20% Similarity=0.338 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhh
Q 009508 253 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 309 (533)
Q Consensus 253 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~ 309 (533)
+-..|.+.+++.|++|+.+++|+++..++ +.++++.+++++++||.||.|.|...
T Consensus 110 fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 110 FDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVEADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEEcCCcEEECCEEEEEeCCCH
Confidence 44456777788899999999999998775 66666666777899999999999764
No 45
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.50 E-value=4.5e-11 Score=120.63 Aligned_cols=56 Identities=23% Similarity=0.320 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhH
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 310 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~ 310 (533)
.+...|.+.+++.|++++.+++|++|..++ +.+ .+.++++++.+|.||+|+|.+..
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~--~~~-~v~~~~~~i~a~~vV~aaG~~~~ 201 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTE--LLV-TVKTTKGSYQANKLVVTAGAWTS 201 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecC--CeE-EEEeCCCEEEeCEEEEecCcchH
Confidence 567778888888999999999999998865 444 35566668999999999998754
No 46
>PRK10015 oxidoreductase; Provisional
Probab=99.49 E-value=1.6e-11 Score=124.96 Aligned_cols=55 Identities=24% Similarity=0.430 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhh
Q 009508 253 IFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 309 (533)
Q Consensus 253 l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~ 309 (533)
+-..|.+.+++.|++++.+++|+.|..++ +.+.++..+++++.||.||.|.|...
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQAGDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEeCCeEEECCEEEEccCcch
Confidence 44456777788899999999999998765 66666777777899999999999764
No 47
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.49 E-value=1.5e-12 Score=120.03 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCC-eeeecCEEEEccChhhHHHhhhh
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELIKN 316 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~-~~~~ad~VV~a~~~~~~~~ll~~ 316 (533)
+-...+...+.++|+.|+.+..|+.++..++++..+.|.+.. ..+.|+.+|+|+|+|... ++++
T Consensus 154 kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~k-lL~~ 218 (399)
T KOG2820|consen 154 KSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINK-LLPT 218 (399)
T ss_pred HHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHh-hcCc
Confidence 455677888889999999999999999765455556666554 469999999999999877 7765
No 48
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.48 E-value=1.4e-11 Score=119.67 Aligned_cols=57 Identities=23% Similarity=0.197 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhh
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 309 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~ 309 (533)
.+.+.|.+.+++.|++++++++|+++..++ ++..+.++.++.++++|.||.|.|...
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHD-DRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeC-CEEEEEEcCccEEEEeCEEEECCCcch
Confidence 455667777788899999999999998876 333333344446899999999999875
No 49
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.48 E-value=4.6e-11 Score=120.69 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHH
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~ 311 (533)
.+.+.|++..++.|++++.+++|+.+..++ ++.++++..++.+++|+.||.|.|+....
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIRED-DGVVVGVRAGDDEVRAKVVIDADGVNSAL 154 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeC-CcEEEEEEcCCEEEEcCEEEECCCcchHH
Confidence 345568888899999999999999999887 56666666666799999999999977543
No 50
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.47 E-value=9.5e-11 Score=118.12 Aligned_cols=200 Identities=18% Similarity=0.120 Sum_probs=104.6
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhhccccCchhHHhhcc
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 330 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~ 330 (533)
..++..+.+.+.+.|++|+.+++|++|..++ +.+ .+.++++++.+|.||+|+|.+... +++....
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~--~~~-~v~~~~g~~~a~~vV~A~G~~~~~-l~~~~~~----------- 213 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLFNEPVTAIEADG--DGV-TVTTADGTYEAKKLVVSAGAWVKD-LLPPLEL----------- 213 (376)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEeeC--CeE-EEEeCCCEEEeeEEEEecCcchhh-hcccccC-----------
Confidence 3566777777888899999999999999875 433 466666689999999999988543 4432111
Q ss_pred CcceeeEEEEEEeccCCC--CCCCCceeeccCCCccceeeeccccccccCCCCCe-E-EEEEecCC-----CCC-CCCCH
Q 009508 331 LASIDVVSVKLWFDKKVT--VPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSAT-V-IQADFYHA-----NEL-MPLKD 400 (533)
Q Consensus 331 l~~~~~~~v~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v-~~~~~~~~-----~~~-~~~~~ 400 (533)
...+.....+.++.... .......+..... ....++-.. ..++. + +.....+. ... ...+.
T Consensus 214 -~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~y~~p-------~~~~~~l~ig~~~~~~~~~~~~~~~~~~~~ 284 (376)
T PRK11259 214 -PLTPVRQVLAWFQADGRYSEPNRFPAFIWEVP-DGDQYYGFP-------AENGPGLKIGKHNGGQEITSPDERDRFVTV 284 (376)
T ss_pred -CceEEEEEEEEEecCCccCCccCCCEEEEecC-CCceeEecc-------CCCCCceEEEECCCCCCCCChhhccCCCCc
Confidence 11111111222222110 0000011110000 000011000 01122 2 22221111 000 01123
Q ss_pred HHHHHHHHHHHhhhhcCCCCCccccceeeeCCCCccccCCCccccCCCC--CCCCCceEEecccccCCCCCchhhHHHHH
Q 009508 401 DQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRG--FTSFPNLFMAGDWITTRHGSWSQERSYVT 478 (533)
Q Consensus 401 ~ei~~~~~~~l~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~p~~--~~~~~~l~~aG~~~~~g~~~~~iegA~~S 478 (533)
++..+.+++.+.++||.+.. +...+.. ...++|+ ..|-+ ....+|+|++..+... ++--|...
T Consensus 285 ~~~~~~l~~~~~~~~P~~~~--~~~~~~g-----~~~~t~D---~~P~ig~~~~~~gl~~~~G~~g~-----G~~~ap~~ 349 (376)
T PRK11259 285 AEDGAELRPFLRNYLPGVGP--CLRGAAC-----TYTNTPD---EHFIIDTLPGHPNVLVASGCSGH-----GFKFASVL 349 (376)
T ss_pred HHHHHHHHHHHHHHCCCCCc--cccceEE-----ecccCCC---CCceeecCCCCCCEEEEecccch-----hhhccHHH
Confidence 56788899999999997643 3222221 1223333 23422 2236899999877733 34557889
Q ss_pred HHHHHHHHHHH
Q 009508 479 GLEAANRVVDY 489 (533)
Q Consensus 479 G~~aA~~Il~~ 489 (533)
|+..|+.|+..
T Consensus 350 g~~la~li~~~ 360 (376)
T PRK11259 350 GEILADLAQDG 360 (376)
T ss_pred HHHHHHHHhcC
Confidence 99999999764
No 51
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.44 E-value=1.2e-10 Score=117.83 Aligned_cols=206 Identities=14% Similarity=0.042 Sum_probs=105.6
Q ss_pred hhhHHHHHHHHHhcC-CEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhhccccCchhHHhhc
Q 009508 251 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVL 329 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~ 329 (533)
..++..+.+.++++| ..+..++.|+.+..+ . ..+.|.++++++.||+||+|+|.+... +..... ..
T Consensus 156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~--~-~~~~v~t~~g~i~a~~vv~a~G~~~~~-l~~~~~---------~~ 222 (387)
T COG0665 156 RLLTRALAAAAEELGVVIIEGGTPVTSLERD--G-RVVGVETDGGTIEADKVVLAAGAWAGE-LAATLG---------EL 222 (387)
T ss_pred HHHHHHHHHHHHhcCCeEEEccceEEEEEec--C-cEEEEEeCCccEEeCEEEEcCchHHHH-HHHhcC---------CC
Confidence 367888999999999 566668889988875 2 345677777779999999999998655 332211 00
Q ss_pred cCcceeeEEEEEEeccCCCC-CCCCc-eeeccCCCccceeeeccccccccCCCCCeEE-EEEecCC-CCCCCCCHHH-HH
Q 009508 330 NLASIDVVSVKLWFDKKVTV-PNVSN-ACSGFGDSLAWTFFDLNKIYDEHKDDSATVI-QADFYHA-NELMPLKDDQ-VV 404 (533)
Q Consensus 330 ~l~~~~~~~v~l~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~-~~~~~~~~~e-i~ 404 (533)
.+...+.....+.+...... ..... ..... ... ..++-+. .++.++ ....... ..-.+...++ ..
T Consensus 223 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~y~~~~--------~~g~~~~g~~~~~~~~~~~~~~~~~~~~ 292 (387)
T COG0665 223 PLPLRPVRGQALTTEPPEGLLADGLAPVVLVV-DDG-GGYIRPR--------GDGRLRVGGTDEEGGDDPSDPEREDLVI 292 (387)
T ss_pred cCccccccceEEEecCCCccccccccceEEEe-cCC-ceEEEEc--------CCCcEEEeecccccCCCCccccCcchhH
Confidence 00011111011111111100 00000 00000 000 0111110 123222 2221111 0111111122 57
Q ss_pred HHHHHHHhhhhcCCCCCccccceeeeCCCCccccCCCccccCCCCC--CCCCceEEecccccCCCCCchhhHHHHHHHHH
Q 009508 405 AKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF--TSFPNLFMAGDWITTRHGSWSQERSYVTGLEA 482 (533)
Q Consensus 405 ~~~~~~l~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~p~~~--~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~a 482 (533)
..+++.+.+++|.+....+... |....+..+|+. .|.+- .+.+|+|++..+...| +.-+..+|+.+
T Consensus 293 ~~l~~~~~~~~P~l~~~~~~~~----w~g~~~~t~pd~---~P~iG~~~~~~~l~~a~G~~~~G-----~~~~p~~g~~l 360 (387)
T COG0665 293 AELLRVARALLPGLADAGIEAA----WAGLRPPTTPDG---LPVIGRAAPLPNLYVATGHGGHG-----FTLAPALGRLL 360 (387)
T ss_pred HHHHHHHHHhCcccccccccee----eeccccCCCCCC---CceeCCCCCCCCEEEEecCCCcC-----hhhccHHHHHH
Confidence 7899999999998765444332 222222222333 23222 2378999999887433 44578899999
Q ss_pred HHHHHHHhC
Q 009508 483 ANRVVDYLG 491 (533)
Q Consensus 483 A~~Il~~~g 491 (533)
|+.|+....
T Consensus 361 A~li~g~~~ 369 (387)
T COG0665 361 ADLILGGEP 369 (387)
T ss_pred HHHHcCCCC
Confidence 999987654
No 52
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.44 E-value=5.1e-13 Score=133.16 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=42.4
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe-CCeeeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~-~~~~~~ad~VV~a~~~~~ 309 (533)
...+++.|.+.++++|++|+++++|++|+.++ +.+..|.+ +++++.||.||+|+|...
T Consensus 108 a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~f~v~~~~~~~~~a~~vILAtGG~S 166 (409)
T PF03486_consen 108 ASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGVFGVKTKNGGEYEADAVILATGGKS 166 (409)
T ss_dssp HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEEEEEEETTTEEEEESEEEE----SS
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--CceeEeeccCcccccCCEEEEecCCCC
Confidence 34688889999999999999999999999876 66667888 778999999999988654
No 53
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.41 E-value=1.2e-10 Score=125.50 Aligned_cols=56 Identities=16% Similarity=0.079 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCe-eeecCEEEEccChhhH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE-TYSAGAVVLAVGISTL 310 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~-~~~ad~VV~a~~~~~~ 310 (533)
..++..+.+.+++ |++|+.+++|++|..++ +.+. +.++++ .+.+|.||+|+|.+..
T Consensus 408 ~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~--~~~~-v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 408 AELCRALLALAGQ-QLTIHFGHEVARLERED--DGWQ-LDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHhccc-CcEEEeCCEeeEEEEeC--CEEE-EEECCCcEEECCEEEECCCCCcc
Confidence 4678888888888 99999999999998875 4443 555554 5689999999999864
No 54
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.40 E-value=3.6e-10 Score=114.50 Aligned_cols=65 Identities=20% Similarity=0.351 Sum_probs=46.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCC-cccccccccCCCcHHHHHHHhCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD-DISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~-~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
...+||+|||||++|+++|+.|+++|++|+|+|+.+..+-.. ..+.. .....+...++++++|+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r-~~~l~~~~~~~l~~lGl~ 69 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLR-VYAFAADNAALLDRLGVW 69 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCE-EEEecHHHHHHHHHCCch
Confidence 567899999999999999999999999999999986542110 00111 112234556788888876
No 55
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.39 E-value=2.7e-10 Score=119.41 Aligned_cols=59 Identities=22% Similarity=0.198 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CC--eeeecCEEEEccChhhHH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~--~~~~ad~VV~a~~~~~~~ 311 (533)
.+++..+++.+.++|++|+.+++|++|..++ +.++++.. ++ .++.||.||+|+|+|.-.
T Consensus 149 ~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~ 213 (546)
T PRK11101 149 FRLTAANMLDAKEHGAQILTYHEVTGLIREG--DTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQH 213 (546)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEEcC--CeEEEEEEEEcCCCcEEEEECCEEEECCChhHHH
Confidence 3677778888888999999999999999875 66665543 22 479999999999999643
No 56
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.35 E-value=1.1e-12 Score=95.58 Aligned_cols=56 Identities=36% Similarity=0.669 Sum_probs=47.4
Q ss_pred EECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC----------Cccccccccc--CCCcHHHHHHHh
Q 009508 52 VVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP----------DDISMQGFWY--PFRNIFSLVDEL 107 (533)
Q Consensus 52 VIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~----------~~~G~~~~~~--~~~~~~~~~~~l 107 (533)
|||||++||++|+.|+++|++|+|+|+++++||+ +|.|.+.+.. .++++.+++++|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~l~~~L 68 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIPGYRFDLGAHYFFPPDDYPNLFRLLREL 68 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEETTEEEETSS-SEEETTSCHHHHHHHHTT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEECCEEEeeccEEEeCCCCchHHHHHHcCC
Confidence 8999999999999999999999999999999999 5777777765 457788887764
No 57
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.34 E-value=2.4e-10 Score=121.23 Aligned_cols=61 Identities=20% Similarity=0.107 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhhHH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~~~ 311 (533)
.+++..+++.++++|++|+.+++|++|..+++++.++++.. +++ ++.+|.||+|+|+|.-.
T Consensus 232 ~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~ 298 (627)
T PLN02464 232 SRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDE 298 (627)
T ss_pred HHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHH
Confidence 47888899999999999999999999987621155555442 333 68999999999999643
No 58
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=99.32 E-value=1.7e-10 Score=107.81 Aligned_cols=424 Identities=15% Similarity=0.161 Sum_probs=199.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC----CCeEEEEcCCCCCCCCCccc---ccccc--------cCCCcHHHHHHHh-C
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQ----GFDVTVLDDGNGFGSPDDIS---MQGFW--------YPFRNIFSLVDEL-G 108 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~----G~~V~vlE~~~~~GG~~~~G---~~~~~--------~~~~~~~~~~~~l-g 108 (533)
-..+.+-|||+|++||++|..|.+. |.+++|+|.-+..||..|.- -++|. ..+..++++++.+ .
T Consensus 20 VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~RGGRemEnhfEc~WDlfrsIPS 99 (587)
T COG4716 20 VDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVRGGREMENHFECLWDLFRSIPS 99 (587)
T ss_pred cccceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeecCcHHHHHHHHHHHHHHhcCcc
Confidence 3457899999999999999999875 68999999999999984321 12222 2344566666654 2
Q ss_pred CC--CCCcccccceecCCCceecccccccCCCCCCCcccchhhh-hcCCCHHhhhhcchhhHHhhcCCCCchhhhccCCc
Q 009508 109 IK--PFTGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQ-FSRLPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSI 185 (533)
Q Consensus 109 ~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (533)
++ .........++..+.-. ....++-..-|+...+. --.+.-.+...++.++. ..-+.+++.
T Consensus 100 Lei~naSvldEfy~~d~~dPn------~s~cRli~k~g~rv~ddg~~tl~~~~~~ei~kL~~---------t~EE~L~~~ 164 (587)
T COG4716 100 LEIPNASVLDEFYWLDKDDPN------SSNCRLIHKRGRRVDDDGSFTLNNKARKEIIKLLM---------TPEEKLDDL 164 (587)
T ss_pred ccCCCcHHHHHHHhccCCCCC------ccceeeeeccccccccccccccChhhHHHHHHHHc---------CcHHhcCCc
Confidence 22 11111111111111100 01122222222111000 00111111111111111 122567888
Q ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHH--HhhcCCc-ceeeecCCcchhhHHHHHHHHH
Q 009508 186 TARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFII--LAHQKNF-DLVWCRGTLREKIFEPWMDSMR 262 (533)
Q Consensus 186 s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~-~~~~~~g~~~~~l~~~l~~~l~ 262 (533)
++++|+...-+...+ -..|..++... . -.|+.+.-.-+.++. ....+.+ .+.+.+-+..+.++..|...|+
T Consensus 165 tI~d~Fse~FF~sNF-W~yW~tmFAFe----k-WhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlPli~yL~ 238 (587)
T COG4716 165 TIEDWFSEDFFKSNF-WYYWQTMFAFE----K-WHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLPLITYLK 238 (587)
T ss_pred cHHHhhhHhhhhhhH-HHHHHHHHhhh----H-HHHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHHHHHHHH
Confidence 999988764343333 22222222111 1 112211111111111 1111111 1223344556789999999999
Q ss_pred hcCCEEEcCceeeEEEeccCCceEEE----EEeCCe--eeec-CEEEEccChhhHHHhhhhccccCchh---------HH
Q 009508 263 TRGCEFLDGRRVTDFIYDEERCCISD----VVCGKE--TYSA-GAVVLAVGISTLQELIKNSILCNREE---------FL 326 (533)
Q Consensus 263 ~~G~~i~~~~~V~~I~~~~~~~~v~~----v~~~~~--~~~a-d~VV~a~~~~~~~~ll~~~~~~~~~~---------~~ 326 (533)
++|+++.++++|+.|+.+...|+.+. +..+++ +++- |.|+++-+.-+-..-.++...+.++. +.
T Consensus 239 ~H~Vdf~~~~~Vedi~v~~t~gkkvA~aih~~~d~~~ieLt~dDlVfvTNgsiTeSsT~Gd~~tpAp~t~elggSw~LW~ 318 (587)
T COG4716 239 SHGVDFTYDQKVEDIDVDDTPGKKVAKAIHVLGDAETIELTPDDLVFVTNGSITESSTYGDMNTPAPKTEELGGSWELWY 318 (587)
T ss_pred HcCCceEeccEEeeeeeccCcchhHHHHHHHhcCcceeecCCCceEEEecceeccccccCCCCCCCCChhhcCCcHHHHH
Confidence 99999999999999998863443221 222333 3333 55666544332222222221100000 01
Q ss_pred ----hhccCc----------ce-eeEEEEEEeccCCCC----------CCCCceeec----cCCCccceeeecccccccc
Q 009508 327 ----KVLNLA----------SI-DVVSVKLWFDKKVTV----------PNVSNACSG----FGDSLAWTFFDLNKIYDEH 377 (533)
Q Consensus 327 ----~~~~l~----------~~-~~~~v~l~~~~~~~~----------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 377 (533)
+-..++ .. .+++..+..+.+.-. ..+..+..| +. ...|...-....++.|
T Consensus 319 nlA~qs~~fGnP~~F~~~~p~~sW~vSaTvT~~~~ki~~~iEr~t~rd~~~Gkv~tGgiiTik-DSnWlmSf~i~rQphF 397 (587)
T COG4716 319 NLAQQSPEFGNPDVFCQHIPKESWFVSATVTCKNDKILPYIERLTHRDLIPGKVVTGGIITIK-DSNWLMSFTIHRQPHF 397 (587)
T ss_pred HHHhcCcccCCCchhhccCccccceEEEEEEecCchHHHHHHHHhCCCCCCCcccccceEEEe-ccchhhhhhhhcCccc
Confidence 111111 11 112222222222100 011111111 11 1234332122233333
Q ss_pred CCCC--CeEEE-EEecC-------CCCCCCCCHHHHHHHHHHHHhhh---hcCCCCCccccceeeeCCCCccccCCCccc
Q 009508 378 KDDS--ATVIQ-ADFYH-------ANELMPLKDDQVVAKAVSYLSKC---IKDFSTATVMDHKIRRFPKSLTHFFPGSYK 444 (533)
Q Consensus 378 ~~~~--~~v~~-~~~~~-------~~~~~~~~~~ei~~~~~~~l~~~---~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~ 444 (533)
...+ ..++. ...|+ ..++.+++.+||.++++-+|--- +-++.. +++.......|+-..+|.|..-.
T Consensus 398 K~Q~~net~~WiYgLysd~~GdyvkKpi~eCtGeEI~~E~lyHLg~~~d~ie~l~~-~~iNtiPvYMPyItsyFm~Ra~g 476 (587)
T COG4716 398 KEQDENETITWIYGLYSDRVGDYVKKPIEECTGEEITQELLYHLGVPTDKIEDLAK-DIINTIPVYMPYITSYFMPRAMG 476 (587)
T ss_pred cccCCCceEEEEEeeccCCCcchhcCchhhcCHHHHHHHHHHHcCCCHHHHHHHHH-hcccccceeehhhhhhhcccccC
Confidence 3322 22221 11222 13455678889988888766322 222222 22333223366666666666555
Q ss_pred cCCCCCCC-CCceEEecccccCCCC-CchhhHHHHHHHHHHHHHHHHhC
Q 009508 445 YMMRGFTS-FPNLFMAGDWITTRHG-SWSQERSYVTGLEAANRVVDYLG 491 (533)
Q Consensus 445 ~~p~~~~~-~~~l~~aG~~~~~g~~-~~~iegA~~SG~~aA~~Il~~~g 491 (533)
.||...+. --||.|.|.++.+.-. +.+.|.++++++.|+-.+|.--.
T Consensus 477 DRP~VvPe~S~NlafignFaEt~rDtVFTtEYSvRtAmeAVY~lLnidr 525 (587)
T COG4716 477 DRPLVVPEGSVNLAFIGNFAETERDTVFTTEYSVRTAMEAVYQLLNIDR 525 (587)
T ss_pred CCceecCCCceehHHhhhhccccccceeeeehhHHHHHHHHHHHHhccc
Confidence 56655432 3578899998866322 26889999999999999887765
No 59
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.32 E-value=5.1e-10 Score=112.82 Aligned_cols=57 Identities=23% Similarity=0.183 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCC----e--eeecCEEEEccChhhHH
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK----E--TYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~----~--~~~ad~VV~a~~~~~~~ 311 (533)
+|+-..+..+.++|.+|+..++|+++..++ + +++|+..+ + ++.|+.||.|+|+|.-.
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~ 227 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRARAVVNAAGPWVDE 227 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcCEEEECCCccHHH
Confidence 677777777788999999999999999987 6 77776542 2 68999999999999765
No 60
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=99.32 E-value=2.6e-11 Score=109.41 Aligned_cols=206 Identities=14% Similarity=0.127 Sum_probs=106.3
Q ss_pred hhHHHHHHHHHhc-CCEEEcCceeeEEEeccCCceEEEEEeC---C--eeeecCEEEEccChhhHHHhhhhccccCchhH
Q 009508 252 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGISTLQELIKNSILCNREEF 325 (533)
Q Consensus 252 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~~v~~v~~~---~--~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~ 325 (533)
.+++.+.+.+++. |+++.++. |.+|..+ .+++..+... + .....+++|+++|||+.. +++..
T Consensus 148 lFc~~i~sea~k~~~V~lv~Gk-v~ev~dE--k~r~n~v~~ae~~~ti~~~d~~~ivvsaGPWTsk-llp~~-------- 215 (380)
T KOG2852|consen 148 LFCHFILSEAEKRGGVKLVFGK-VKEVSDE--KHRINSVPKAEAEDTIIKADVHKIVVSAGPWTSK-LLPFT-------- 215 (380)
T ss_pred HHHHHHHHHHHhhcCeEEEEee-eEEeecc--cccccccchhhhcCceEEeeeeEEEEecCCCchh-hcccc--------
Confidence 5677788887766 49999974 8888733 3665555443 2 256788999999999876 55543
Q ss_pred HhhccCcceeeEEEEEEeccCCCCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecCCCC-CCCCCH----
Q 009508 326 LKVLNLASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANE-LMPLKD---- 400 (533)
Q Consensus 326 ~~~~~l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~---- 400 (533)
.+..+. ...+.+....+ +-.++.++..+....+-..++ .+.|+..++.++.+....... +.+.++
T Consensus 216 -rIsglr---ihsI~l~~~e~--~v~~~avf~~l~~~~g~ei~~----pe~y~rkd~Evyicg~~~~e~~lPedsd~v~~ 285 (380)
T KOG2852|consen 216 -RISGLR---IHSITLSPGEK--PVGPSAVFCELNTMDGLEICK----PEEYARKDREVYICGETDKEHLLPEDSDDVFV 285 (380)
T ss_pred -ccceee---eeeEEecCCCC--CCCCceEEEEEEeCCCccccC----cceeecCCceEEEecCCCccccCCccccccee
Confidence 222222 22222322222 122333333322111100111 123444566666554433322 222111
Q ss_pred -HHHHHHHHHHHhhhhcCCCCCccccceeeeCCCCccccCCCccc-cCCCCCCCCCceEEecccccCCCCCchhhHHHHH
Q 009508 401 -DQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYK-YMMRGFTSFPNLFMAGDWITTRHGSWSQERSYVT 478 (533)
Q Consensus 401 -~ei~~~~~~~l~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~-~~p~~~~~~~~l~~aG~~~~~g~~~~~iegA~~S 478 (533)
.+-++++.+....+.+.+.+..+. ..+..|.|-... ..|-+.+--.++|.|..+. +|+|..|..+
T Consensus 286 npeki~~Lk~~a~~v~s~l~ks~v~--------~~qacfLP~sn~tg~PvIget~sg~yVaagHs-----cWGItnaPaT 352 (380)
T KOG2852|consen 286 NPEKIIELKEMADLVSSELTKSNVL--------DAQACFLPTSNITGIPVIGETKSGVYVAAGHS-----CWGITNAPAT 352 (380)
T ss_pred CHHHHHHHHHHHHHhhhhhccchhh--------hhhhccccccCCCCCceEeecCCceEEeeccc-----ccceecCcch
Confidence 222333333344444444332222 223344444321 3343332224777765443 3678999999
Q ss_pred HHHHHHHHHHHhCC
Q 009508 479 GLEAANRVVDYLGD 492 (533)
Q Consensus 479 G~~aA~~Il~~~g~ 492 (533)
|...|+.||+....
T Consensus 353 G~~mAEllldgeaT 366 (380)
T KOG2852|consen 353 GKCMAELLLDGEAT 366 (380)
T ss_pred hHHHHHHHhcccee
Confidence 99999999998874
No 61
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.32 E-value=1.2e-09 Score=109.59 Aligned_cols=57 Identities=18% Similarity=0.149 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHhc-CCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhh
Q 009508 251 EKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK 315 (533)
Q Consensus 251 ~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~ 315 (533)
..++..|.+.+.+. |++|+.+++|++|+. + .+.++++.+.||+||+|+|++... |++
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~----~---~v~t~~g~i~a~~VV~A~G~~s~~-l~~ 202 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHWNTAVTSVET----G---TVRTSRGDVHADQVFVCPGADFET-LFP 202 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCeEEEEec----C---eEEeCCCcEEeCEEEECCCCChhh-hCc
Confidence 35777888887765 999999999999963 2 355566678999999999998643 443
No 62
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.30 E-value=3.4e-09 Score=108.30 Aligned_cols=63 Identities=16% Similarity=0.261 Sum_probs=46.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
+.++||+|||||++||++|..|+++|++|+|+|+.+...-. ..| .. ..-.++..+.++++|+.
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~g-~~-~~l~~~~~~~L~~lGl~ 78 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAA-AKG-QA-YALSLLSARIFEGIGVW 78 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccC-CCC-cE-EEechHHHHHHHHCChh
Confidence 34689999999999999999999999999999998764210 111 01 11234566788888875
No 63
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.29 E-value=9.7e-10 Score=114.43 Aligned_cols=41 Identities=20% Similarity=0.362 Sum_probs=37.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
..++||+|||||++|+++|+.|+++|.+|+|||+++..+|.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~Gt 44 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGT 44 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCC
Confidence 34589999999999999999999999999999999876663
No 64
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.28 E-value=8.9e-10 Score=111.09 Aligned_cols=59 Identities=27% Similarity=0.385 Sum_probs=45.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC-CCCCCCCcccccccccCCCcHHHHHHHhCC-C
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG-NGFGSPDDISMQGFWYPFRNIFSLVDELGI-K 110 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~-~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~-~ 110 (533)
.+||+|||||++||++|..|+++|++|+|+|+. ... ...| .-..-.++..++++++|+ +
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~---~~~~--r~~~l~~~~~~~L~~lG~~~ 62 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPREL---LERG--RGIALSPNALRALERLGLWD 62 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCcccc---ccCc--eeeeecHhHHHHHHHcCChh
Confidence 579999999999999999999999999999998 221 1122 111234667789999998 5
No 65
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.28 E-value=8.2e-10 Score=109.16 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCee-eecCEEEEccChhhHH
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKET-YSAGAVVLAVGISTLQ 311 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~-~~ad~VV~a~~~~~~~ 311 (533)
.++..+++.++++|++|++|++|+.|+..+ +|..+..+.++++ ++|+.||.|+|.....
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~-dg~~~~~~~~g~~~~~ak~Vin~AGl~Ad~ 213 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQS-DGVFVLNTSNGEETLEAKFVINAAGLYADP 213 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeC-CceEEEEecCCcEEEEeeEEEECCchhHHH
Confidence 578889999999999999999999999987 4433323333434 9999999999988655
No 66
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.28 E-value=2.2e-09 Score=111.66 Aligned_cols=40 Identities=20% Similarity=0.411 Sum_probs=36.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
..+||+|||||++|+++|+.|+++|.+|+|||+++..+|.
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASAT 44 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCc
Confidence 4589999999999999999999999999999999877764
No 67
>PRK06185 hypothetical protein; Provisional
Probab=99.27 E-value=8.1e-10 Score=112.57 Aligned_cols=61 Identities=31% Similarity=0.438 Sum_probs=43.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
...+||+|||||++|+++|+.|+++|++|+|+|+.+...- +.... .-.+...++++++|+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~--~~r~~---~l~~~s~~~L~~lG~~ 64 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLR--DFRGD---TVHPSTLELMDELGLL 64 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc--cccCc---eeChhHHHHHHHcCCh
Confidence 4668999999999999999999999999999999854311 11001 1133455667777664
No 68
>PRK08244 hypothetical protein; Provisional
Probab=99.27 E-value=2.8e-09 Score=111.22 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=44.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
++||+|||||++||++|..|+++|++|+|+|+.+...- .+ . -..-.++..++++++|+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~---~~-r-a~~l~~~~~e~l~~lGl~ 60 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVP---YS-K-ALTLHPRTLEILDMRGLL 60 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC---Cc-c-eeEecHHHHHHHHhcCcH
Confidence 47999999999999999999999999999999865311 01 0 112245567888888875
No 69
>PRK06847 hypothetical protein; Provisional
Probab=99.26 E-value=1.4e-09 Score=109.56 Aligned_cols=58 Identities=21% Similarity=0.138 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHH
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~ 311 (533)
.+.+.|.+.+++.|++|+++++|++|+.++ +.+.....+++++.+|.||.|.|.+...
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~~~v~~~~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDD--DGVTVTFSDGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcC--CEEEEEEcCCCEEEcCEEEECcCCCcch
Confidence 466677777778899999999999998765 4333233355689999999999988644
No 70
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.25 E-value=1.2e-10 Score=109.43 Aligned_cols=40 Identities=35% Similarity=0.536 Sum_probs=37.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGS 84 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG 84 (533)
...+||+|||||++||+||+.|+++|++|+|+|+...+||
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Gg 62 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCC
Confidence 4568999999999999999999999999999999988877
No 71
>PRK07045 putative monooxygenase; Reviewed
Probab=99.25 E-value=9.5e-09 Score=103.94 Aligned_cols=61 Identities=25% Similarity=0.362 Sum_probs=46.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
++++||+|||||++||++|..|+++|++|+|+|+.+...- ..|.. .-.++..+.++++|+.
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~--~~~~~---~l~~~~~~~L~~lGl~ 63 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRA--QNGAD---LLKPSGIGVVRAMGLL 63 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccC--CCccc---ccCccHHHHHHHcCCH
Confidence 4568999999999999999999999999999999876520 11211 1245556778888875
No 72
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.25 E-value=1.3e-11 Score=113.46 Aligned_cols=226 Identities=11% Similarity=0.070 Sum_probs=128.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC----C---------cccccccccCCCcHHHHHHHh-CCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP----D---------DISMQGFWYPFRNIFSLVDEL-GIKPF 112 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~----~---------~~G~~~~~~~~~~~~~~~~~l-g~~~~ 112 (533)
++|++|||||++|+..|..|++.|++|+|+|+++++||. . -.|+|.|+.+...+++++..+ -+.+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~e~~~Y 80 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFTEFNPY 80 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhhhhhhh
Confidence 479999999999999999999999999999999999998 2 247888888888888887665 22211
Q ss_pred CcccccceecCCCceecccccccCCCCCCCcccchhhhhcC--CCHHhhhhcchhhHHhhcCCCCchhhhccCCccHHHH
Q 009508 113 TGWMKSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSR--LPLVDRLTSLPLMAAVIDFDNTDVAWRKYDSITAREL 190 (533)
Q Consensus 113 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 190 (533)
. ....-..+|..+..|+ .++. ..++.. .+-.+ ...+...... .....+-.++++-
T Consensus 81 ~---hrVla~~ng~~~~lP~---------nl~t--i~ql~G~~~~p~~----a~~~i~~~~~-----~~~~~~~q~~ee~ 137 (374)
T COG0562 81 Q---HRVLALVNGQLYPLPF---------NLNT--INQLFGKNFTPDE----ARKFIEEQAA-----EIDIAEPQNLEEQ 137 (374)
T ss_pred c---cceeEEECCeeeeccc---------cHHH--HHHHhCccCCHHH----HHHHHHHhhc-----cccccchhhhhhH
Confidence 1 1111123444443332 1111 111110 10000 0000000000 0111122334443
Q ss_pred HHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHh--hcCCcceeeecCCcchhhHHHHHHHHHhcCCEE
Q 009508 191 FKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA--HQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEF 268 (533)
Q Consensus 191 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~l~~~l~~~l~~~G~~i 268 (533)
.-++ +.+.++++++..+....||.++.++++......--.+... .+.+.-.+.|.+|. +..+.+.++...++|
T Consensus 138 ais~-vg~~LY~~f~kgYT~KQWG~~p~eLpasvi~RvPVr~~~dn~YF~d~yQGlP~~GY----T~~~~kMl~hp~I~V 212 (374)
T COG0562 138 AISL-VGRDLYEAFFKGYTEKQWGLDPKELPASVIKRLPVRLNFDNRYFSDTYQGLPKDGY----TAMFEKMLDHPNIDV 212 (374)
T ss_pred HHHH-HHHHHHHHHhccccHHHhCCChHHCCHHHhcccceEEcccCcccCcccccCccccH----HHHHHHHhcCCCceE
Confidence 2222 3488889999999999999999999987543221111000 01111122344553 333444456668999
Q ss_pred EcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHH
Q 009508 269 LDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 312 (533)
Q Consensus 269 ~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ 312 (533)
++|+.-..+.... . .+.+..||.|.+....-.
T Consensus 213 ~Lntd~~~~~~~~--~----------~~~~~~VvytG~iD~~Fd 244 (374)
T COG0562 213 RLNTDFFDVKDQL--R----------AIPFAPVVYTGPIDAYFD 244 (374)
T ss_pred EecCcHHHHhhhh--c----------ccCCCceEEecchHhhhc
Confidence 9999877665442 0 134558999988765543
No 73
>PRK06184 hypothetical protein; Provisional
Probab=99.24 E-value=6.2e-09 Score=108.81 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=46.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
.++||+|||||++||++|..|+++|++|+|||+.+.+.-. .-+. .-.++..++++++|+.
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~--~ra~---~l~~~~~e~l~~lGl~ 61 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPG--SRGK---GIQPRTQEVFDDLGVL 61 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcC--ccce---eecHHHHHHHHHcCcH
Confidence 4689999999999999999999999999999998755310 0011 1236677888888875
No 74
>PRK07190 hypothetical protein; Provisional
Probab=99.24 E-value=4e-09 Score=108.93 Aligned_cols=55 Identities=15% Similarity=0.249 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHH
Q 009508 255 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 255 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~ 311 (533)
..|.+.+++.|++|+.+++|++|+.++ ++..+ ...++++++|++||.|.|.....
T Consensus 113 ~~L~~~~~~~Gv~v~~~~~v~~l~~~~-~~v~v-~~~~g~~v~a~~vVgADG~~S~v 167 (487)
T PRK07190 113 KLLDDKLKEAGAAVKRNTSVVNIELNQ-AGCLT-TLSNGERIQSRYVIGADGSRSFV 167 (487)
T ss_pred HHHHHHHHHCCCEEEeCCEEEEEEEcC-CeeEE-EECCCcEEEeCEEEECCCCCHHH
Confidence 445666777899999999999999876 34332 33445689999999999987754
No 75
>PRK06834 hypothetical protein; Provisional
Probab=99.24 E-value=1.4e-09 Score=112.36 Aligned_cols=57 Identities=25% Similarity=0.223 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe-CCeeeecCEEEEccChhhHH
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~-~~~~~~ad~VV~a~~~~~~~ 311 (533)
.+-..|.+.+++.|++|+.+++|++|+.++ ++ +. ++. ++.++++|+||.|.|.+...
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~-~~-v~-v~~~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDD-TG-VD-VELSDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC-Ce-EE-EEECCCCEEEeCEEEEecCCCCCc
Confidence 344557777778899999999999999876 33 32 333 34589999999999988744
No 76
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=99.21 E-value=1.9e-09 Score=109.05 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhcC-CEEEcCceeeEEEeccCCceEEEEEe-CCeeeecCEEEEccChhhH
Q 009508 252 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTL 310 (533)
Q Consensus 252 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~~~v~~v~~-~~~~~~ad~VV~a~~~~~~ 310 (533)
.+.+.|.+.+.+.| ++|+.+++|++++.++ +.+. ++. ++.++++|.||.|.|.+..
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~--~~~~-v~~~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHS--DHVE-LTLDDGQQLRARLLVGADGANSK 164 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecC--CeeE-EEECCCCEEEeeEEEEeCCCCCH
Confidence 45666777777777 9999999999998875 4433 443 4557999999999998764
No 77
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.20 E-value=5.6e-09 Score=106.24 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe-CCeeeecCEEEEccChhhHH
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~-~~~~~~ad~VV~a~~~~~~~ 311 (533)
.+.+.|.+.+++.|++|+.+++|++++.++ ++ +. ++. ++.++++|.||.|.|.+...
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~-~~-v~-v~~~~g~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSG-DD-WL-LTLADGRQLRAPLVVAADGANSAV 170 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcC-Ce-EE-EEECCCCEEEeCEEEEecCCCchh
Confidence 455667777777899999999999998775 33 32 333 44589999999999988754
No 78
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.20 E-value=8.1e-09 Score=108.75 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=46.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
...+||+|||||++||++|..|+++|++|+|||+.+.+... + .. ..-.++..+.++++|+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~---~-ra-~~l~~~~~~~L~~lGl~ 68 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDL---P-RA-VGIDDEALRVLQAIGLA 68 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCC---C-ce-eeeCHHHHHHHHHcCCh
Confidence 45689999999999999999999999999999999765421 1 11 12234566778888875
No 79
>PRK08013 oxidoreductase; Provisional
Probab=99.20 E-value=1.5e-08 Score=102.78 Aligned_cols=63 Identities=22% Similarity=0.231 Sum_probs=46.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCccccc---ccccCCCcHHHHHHHhCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQ---GFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~---~~~~~~~~~~~~~~~lg~~ 110 (533)
+.+||+|||||++||++|+.|+++|++|+|+|+.+...- ..|.. ....-.+...++++++|+.
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~--~~g~~~~~r~~~l~~~s~~~L~~lGl~ 67 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPL--AADAPPALRVSAINAASEKLLTRLGVW 67 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCccc--ccCCCCCceeeecchhHHHHHHHcCCc
Confidence 358999999999999999999999999999999875321 11110 0111245567888999876
No 80
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.20 E-value=6.9e-10 Score=103.96 Aligned_cols=40 Identities=38% Similarity=0.626 Sum_probs=37.4
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGS 84 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG 84 (533)
...+||+|||||++||+||+.|+++|++|+|+|++..+||
T Consensus 19 ~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Gg 58 (254)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGG 58 (254)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCc
Confidence 3578999999999999999999999999999999998876
No 81
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=99.19 E-value=1.2e-09 Score=109.22 Aligned_cols=58 Identities=28% Similarity=0.353 Sum_probs=42.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
+||+|||||++||++|..|+++|++|+|||+.+...-. .... ...++..++++++|+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~--~~~~---~l~~~~~~~l~~lgl~ 59 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPK--GRGI---GLSPNSLRILQRLGLL 59 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCS--SSSE---EEEHHHHHHHHHTTEH
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccccccc--cccc---ccccccccccccccch
Confidence 69999999999999999999999999999998765321 1111 1234556788888866
No 82
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=99.19 E-value=6.1e-08 Score=99.03 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=34.9
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 43 ~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
++..++||+|||||++|++||+.|+++|++|+|+|+..
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 44667999999999999999999999999999999974
No 83
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.19 E-value=5e-10 Score=113.34 Aligned_cols=57 Identities=19% Similarity=0.228 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 310 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~ 310 (533)
..+.+.|.+.+++.|++|+++++|++|..++ +.+ .+.++++++.+|.||+|+|.+..
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~~~g~i~ad~vV~A~G~~s~ 205 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHA--NGV-VVRTTQGEYEARTLINCAGLMSD 205 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecC--CeE-EEEECCCEEEeCEEEECCCcchH
Confidence 4678889999999999999999999998765 443 45666668999999999999863
No 84
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=99.18 E-value=2.3e-08 Score=105.63 Aligned_cols=64 Identities=28% Similarity=0.461 Sum_probs=48.6
Q ss_pred CCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 42 NNGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 42 ~~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
+..+.++||+|||||++||++|+.|++.|++|+|+|+.+.... +... ..-.++..++++++|+.
T Consensus 18 ~~~~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~----~~ra-~~l~~~~~~~l~~lGl~ 81 (547)
T PRK08132 18 ADDPARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLST----GSRA-ICFAKRSLEIFDRLGCG 81 (547)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCC----CCeE-EEEcHHHHHHHHHcCCc
Confidence 3445778999999999999999999999999999999975432 1111 12234567888888876
No 85
>PLN02697 lycopene epsilon cyclase
Probab=99.18 E-value=1.1e-08 Score=105.47 Aligned_cols=57 Identities=9% Similarity=0.027 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhH
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 310 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~ 310 (533)
.|.+.|.+.+.+.|+++ ++++|++|..++ ++..+.+..++.+++|+.||.|.|.+..
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~-~~~~vv~~~dG~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEAS-DGLRLVACEDGRVIPCRLATVASGAASG 249 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcC-CcEEEEEEcCCcEEECCEEEECCCcChh
Confidence 46667788888889998 688999998765 3433223445668999999999999873
No 86
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.18 E-value=5.4e-10 Score=97.37 Aligned_cols=39 Identities=33% Similarity=0.606 Sum_probs=36.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGS 84 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG 84 (533)
...||+|||||.+||+|||+|+++|.+|+|+|++..+||
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG 67 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCC
Confidence 346999999999999999999999999999999999988
No 87
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.17 E-value=1e-09 Score=112.47 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHh----cC--CEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHH
Q 009508 251 EKIFEPWMDSMRT----RG--CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 251 ~~l~~~l~~~l~~----~G--~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~ 311 (533)
..++..+.+.+++ .| ++|+++++|++|+.++ +..+.|.++++++.||.||+|+|.|...
T Consensus 211 ~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~--~~~~~V~T~~G~i~A~~VVvaAG~~S~~ 275 (497)
T PTZ00383 211 QKLSESFVKHARRDALVPGKKISINLNTEVLNIERSN--DSLYKIHTNRGEIRARFVVVSACGYSLL 275 (497)
T ss_pred HHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC--CCeEEEEECCCEEEeCEEEECcChhHHH
Confidence 3688889999888 77 7899999999999875 3345577777789999999999999765
No 88
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.17 E-value=5.1e-09 Score=105.99 Aligned_cols=60 Identities=27% Similarity=0.480 Sum_probs=45.0
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
++.+||+|||||++||++|+.|+++|++|+|+|+.+..+ +.....+ .+...++++++|+.
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~---~~r~~~l---~~~s~~~l~~lgl~ 64 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYA---DLRTTAL---LGPSIRFLERLGLW 64 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCC---CcchhhC---cHHHHHHHHHhCch
Confidence 456899999999999999999999999999999986542 1111111 22345677888865
No 89
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.17 E-value=2.5e-09 Score=108.82 Aligned_cols=57 Identities=16% Similarity=0.190 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhH
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 310 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~ 310 (533)
.+.+.|.+.+.+.|++|+.+++|++++.++ +.+.....++.++.+|.||.|.|.+..
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~--~~v~v~~~~g~~~~ad~vI~AdG~~S~ 168 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRD--EGVTVTLSDGSVLEARLLVAADGARSK 168 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC--CEEEEEECCCCEEEeCEEEEcCCCChH
Confidence 566778888888899999999999998775 443322234568999999999998754
No 90
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=99.17 E-value=1.1e-08 Score=103.34 Aligned_cols=57 Identities=9% Similarity=0.132 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHh-cCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhH
Q 009508 252 KIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 310 (533)
Q Consensus 252 ~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~ 310 (533)
.+.+.|.+.+.+ .|++++++++|++|..++ ++ +.....+++++.||.||.|.|.+..
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~-~~-~~v~~~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQ-DY-VRVTLDNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC-Ce-EEEEECCCCEEEeeEEEEecCCChH
Confidence 466677888777 499999999999998775 33 3222234557999999999998753
No 91
>PRK07588 hypothetical protein; Provisional
Probab=99.17 E-value=8.2e-09 Score=104.54 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=42.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
+||+|||||++||++|..|+++|++|+|+|+.+... ..| . .....++..+.++++|+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~---~~g-~-~~~l~~~~~~~l~~lGl~ 58 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELR---TGG-Y-MVDFWGVGYEVAKRMGIT 58 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCcc---CCC-e-EEeccCcHHHHHHHcCCH
Confidence 489999999999999999999999999999986542 111 1 111234445677777764
No 92
>PRK09126 hypothetical protein; Provisional
Probab=99.17 E-value=7e-09 Score=105.16 Aligned_cols=63 Identities=25% Similarity=0.232 Sum_probs=45.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC-C-cccccccccCCCcHHHHHHHhCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP-D-DISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~-~-~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
+++||+|||||++||++|..|+++|++|+|+|+.+...-. . ..|. .+ .-.++..+.++++|+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~-~i-~l~~~~~~~L~~lGl~ 66 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGR-EI-ALTHASREILQRLGAW 66 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchh-HH-HhhHHHHHHHHHCCCh
Confidence 4689999999999999999999999999999998754210 0 0110 00 1124556788888875
No 93
>PLN02463 lycopene beta cyclase
Probab=99.17 E-value=3e-08 Score=100.74 Aligned_cols=39 Identities=33% Similarity=0.481 Sum_probs=34.8
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 43 ~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
.....+||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus 24 ~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~ 62 (447)
T PLN02463 24 SKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL 62 (447)
T ss_pred ccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence 345568999999999999999999999999999998753
No 94
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.16 E-value=5.6e-10 Score=98.08 Aligned_cols=40 Identities=35% Similarity=0.464 Sum_probs=33.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
..+||+|||||.+||+||++|+++|++|+|+|++..+||.
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg 55 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGG 55 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTT
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcc
Confidence 4689999999999999999999999999999999988884
No 95
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=99.16 E-value=3e-08 Score=100.40 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=46.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC--CCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF--GSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~--GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
++||+|||||++||++|..|+++|++|+|+|+.+.. .+ ..+... ..++..+.++++|+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~--~~~a~~---l~~~~~~~l~~lGl~ 62 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEG--RIRAGV---LEQGTVDLLREAGVG 62 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCcccccc--ccceeE---ECHhHHHHHHHcCCh
Confidence 579999999999999999999999999999999752 22 122222 245667888999875
No 96
>PRK06126 hypothetical protein; Provisional
Probab=99.15 E-value=6e-09 Score=110.14 Aligned_cols=62 Identities=21% Similarity=0.366 Sum_probs=46.3
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
....+||+|||||++||++|..|+++|++|+|+|+.+...- ...+. ...++..++++++|+.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~--~~ra~---~l~~r~~e~L~~lGl~ 65 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAF--NPKAN---TTSARSMEHFRRLGIA 65 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCC--CCccc---cCCHHHHHHHHhcChH
Confidence 45568999999999999999999999999999999864321 11111 2234566788888875
No 97
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.15 E-value=2.8e-09 Score=110.96 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe--CC---eeeecCEEEEccChhh
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK---ETYSAGAVVLAVGIST 309 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~--~~---~~~~ad~VV~a~~~~~ 309 (533)
..++..|.+.+++.|++|+++++|++|..++ ++++++.. .+ .++.+|.||+|+|.+.
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~ 251 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSKAVVVTTGGFG 251 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence 3578889988999999999999999998765 77666543 22 2688999999998654
No 98
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.15 E-value=2.5e-08 Score=101.03 Aligned_cols=65 Identities=23% Similarity=0.344 Sum_probs=45.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC--CCCcccccccccCCCcHHHHHHHhCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG--SPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G--G~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
.+.+||+|||||++|+++|..|+++|++|+|+|+.+... +....+.+ .....+...++++.+|+.
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r-~~~l~~~~~~~l~~lGl~ 69 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVR-ISAISAASVALLKGLGVW 69 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCce-EEeccHHHHHHHHHcCCh
Confidence 456899999999999999999999999999999975321 00001111 112234456778888875
No 99
>PRK11445 putative oxidoreductase; Provisional
Probab=99.14 E-value=6.8e-08 Score=96.09 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=43.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC--CCCc-ccccccccCCCcHHHHHHHhCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG--SPDD-ISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G--G~~~-~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
++||+|||||++|+++|+.|+++ ++|+|+|+.+..+ |.-. -|. .-.++..+.++++|+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~----~l~~~~~~~L~~lgl~ 62 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGG----LLAPDAQKSFAKDGLT 62 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcC----ccCHHHHHHHHHcCCC
Confidence 47999999999999999999999 9999999987543 1100 110 1234567788888875
No 100
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.13 E-value=3.6e-08 Score=100.28 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=44.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC-CCC--CCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG-NGF--GSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~-~~~--GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
.+||+|||||++||++|..|+++|++|+|+|+. +.. +. ..+... ..-.++..++++++|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~--~~~~r~-~~l~~~~~~~L~~lGl~ 67 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNE--LPDVRV-SALSRSSEHILRNLGAW 67 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccC--CCCcce-ecccHHHHHHHHhCCch
Confidence 579999999999999999999999999999996 221 11 001111 11234667888999876
No 101
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.13 E-value=2e-08 Score=101.66 Aligned_cols=64 Identities=23% Similarity=0.299 Sum_probs=44.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCccccc-ccccCCCcHHHHHHHhCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQ-GFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~-~~~~~~~~~~~~~~~lg~~ 110 (533)
+++||+|||||++||++|+.|++.|++|+|+|+++..... ..+.. ......+...++++.+|+.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~-~~~~~~r~~~l~~~~~~~l~~~g~~ 68 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPA-DDAWDSRVYAISPSSQAFLERLGVW 68 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCcccc-CCCCCCceEeecHHHHHHHHHcCch
Confidence 4689999999999999999999999999999998765320 00000 0011234455677777764
No 102
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.12 E-value=4.1e-08 Score=99.63 Aligned_cols=35 Identities=29% Similarity=0.514 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC---CCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQ---GFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~---G~~V~vlE~~~ 80 (533)
+++||+|||||++|+++|+.|+++ |++|+|+|+..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~ 39 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA 39 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence 568999999999999999999998 99999999953
No 103
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.10 E-value=1.5e-08 Score=104.66 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=34.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC-CCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN-GFGS 84 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~-~~GG 84 (533)
.++||||||||.||+.||+.+++.|++|+|+|++. .+|+
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence 46999999999999999999999999999999873 5554
No 104
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.09 E-value=2.2e-08 Score=101.07 Aligned_cols=63 Identities=27% Similarity=0.319 Sum_probs=44.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCccccccc--ccCCCcHHHHHHHhCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGF--WYPFRNIFSLVDELGIK 110 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~--~~~~~~~~~~~~~lg~~ 110 (533)
.+||+|||||++||++|..|+++|++|+|+|+.+..-- -..|...+ ..-.++..++++++|+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~-~~~~~~~~r~~~l~~~~~~~L~~lG~~ 67 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAF-EPSQPMDIRVSAISQTSVDLLESLGAW 67 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccC-CCCCCCCccEEEecHHHHHHHHHCCCc
Confidence 47999999999999999999999999999998752100 01111111 12245667888888876
No 105
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=99.08 E-value=7.1e-08 Score=97.44 Aligned_cols=32 Identities=28% Similarity=0.553 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
|||+|||||++|+++|+.|+++|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 69999999999999999999999999999997
No 106
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.08 E-value=1.3e-09 Score=112.96 Aligned_cols=58 Identities=26% Similarity=0.224 Sum_probs=47.2
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC-----CeeeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-----KETYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~-----~~~~~ad~VV~a~~~~~ 309 (533)
+..+...|.+.+++.|++|+++++|++|..++ ++++++... ...+.++.||+|+|...
T Consensus 130 g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~~ 192 (466)
T PRK08274 130 GKALVNALYRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAKAVVLAAGGFE 192 (466)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECCEEEECCCCCC
Confidence 34688889999999999999999999999865 777776552 23689999999999754
No 107
>PLN02985 squalene monooxygenase
Probab=99.08 E-value=1.3e-07 Score=98.24 Aligned_cols=65 Identities=18% Similarity=0.279 Sum_probs=47.6
Q ss_pred CCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCCC
Q 009508 42 NNGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIKP 111 (533)
Q Consensus 42 ~~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~~ 111 (533)
...+..+||+|||||++|+++|+.|+++|++|+|+|+......+. .| . .-.++-.+.++++|+.+
T Consensus 38 ~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~-~g-~---~L~p~g~~~L~~LGl~d 102 (514)
T PLN02985 38 ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERM-MG-E---FMQPGGRFMLSKLGLED 102 (514)
T ss_pred cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccc-cc-c---ccCchHHHHHHHcCCcc
Confidence 345567899999999999999999999999999999975422110 11 0 12344567888888763
No 108
>PRK07121 hypothetical protein; Validated
Probab=99.07 E-value=7e-09 Score=107.98 Aligned_cols=60 Identities=23% Similarity=0.282 Sum_probs=48.1
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC--Ce--eeec-CEEEEccChhhH
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGISTL 310 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~--~~--~~~a-d~VV~a~~~~~~ 310 (533)
+..+...|.+.+++.|++|+++++|++|..++ ++++++|... ++ .+.+ +.||+|+|....
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDD-DGRVVGVEARRYGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECC-CCCEEEEEEEeCCcEEEEEeCCEEEECCCCcCc
Confidence 45688889999999999999999999999875 4677776542 22 5788 999999998763
No 109
>PRK07538 hypothetical protein; Provisional
Probab=99.07 E-value=1e-07 Score=97.28 Aligned_cols=58 Identities=22% Similarity=0.412 Sum_probs=44.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
+||+|||||++||++|+.|+++|++|+|+|+.+.+. ..|.. ..-.++..+.++++|+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~---~~g~g--i~l~p~~~~~L~~lgl~ 58 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELR---PLGVG--INLLPHAVRELAELGLL 58 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCccc---ccCcc--eeeCchHHHHHHHCCCH
Confidence 589999999999999999999999999999987553 11211 11235667778888875
No 110
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.07 E-value=9.7e-08 Score=96.63 Aligned_cols=36 Identities=28% Similarity=0.500 Sum_probs=33.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGS 84 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG 84 (533)
||+|||||++|+++|+.|+++|++|+|||+++..||
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~ 36 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPG 36 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCC
Confidence 799999999999999999999999999999876665
No 111
>PRK07236 hypothetical protein; Provisional
Probab=99.07 E-value=3.2e-08 Score=99.97 Aligned_cols=64 Identities=23% Similarity=0.304 Sum_probs=47.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIKP 111 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~~ 111 (533)
.++.++|+|||||++||++|..|+++|++|+|+|+.+..-. ..|. .+ ...++..+.++++|+..
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~--~~g~-gi-~l~~~~~~~l~~lg~~~ 66 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELD--GRGA-GI-VLQPELLRALAEAGVAL 66 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcC--CCCc-ee-EeCHHHHHHHHHcCCCc
Confidence 35568999999999999999999999999999999864311 1111 11 12456778888888763
No 112
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.06 E-value=3e-09 Score=108.72 Aligned_cols=59 Identities=27% Similarity=0.309 Sum_probs=46.7
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC----Ce--eeecCEEEEccChhhH
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KE--TYSAGAVVLAVGISTL 310 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~----~~--~~~ad~VV~a~~~~~~ 310 (533)
+..+...+.+.++++|++|+++++|+++..++ ++|+++... ++ ++.|+.||+|+|....
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 45788999999999999999999999999986 788887654 33 6889999999998875
No 113
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.04 E-value=1.3e-07 Score=95.09 Aligned_cols=58 Identities=5% Similarity=0.129 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhcC-CEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHH
Q 009508 252 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 312 (533)
Q Consensus 252 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ 312 (533)
.|...|.+.+++.+ ++++.+++|++|..++ ++ + .+..+++++++|.||-|-|.....+
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~-~~-v-~v~~~~~~~~adlvIgADG~~S~vR 163 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHN-DY-S-IIKFDDKQIKCNLLIICDGANSKVR 163 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcC-Ce-E-EEEEcCCEEeeCEEEEeCCCCchhH
Confidence 45566777776664 8999999999998776 33 3 2444555899999999999887543
No 114
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=99.03 E-value=4.3e-07 Score=96.84 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=46.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSK-QGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~-~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
.++||+|||||++||++|+.|++ .|++|+|||+.+..- ..|. . .+-.+...++++.+|+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~---~~gr-A-~gl~prtleiL~~lGl~ 91 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRL---ELGQ-A-DGIACRTMEMFQAFGFA 91 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCC---CCCe-e-eEEChHHHHHHHhccch
Confidence 46899999999999999999999 499999999985431 2221 1 12246778899999886
No 115
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.03 E-value=7e-09 Score=106.61 Aligned_cols=59 Identities=25% Similarity=0.270 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe--CC-e--eeecCEEEEccChhhH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GK-E--TYSAGAVVLAVGISTL 310 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~--~~-~--~~~ad~VV~a~~~~~~ 310 (533)
..+.+.|.+.+++.|++|+++++|+++..++ +++++++.. .+ . .+.++.||+|+|.+..
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~-~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDD-QGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECC-CCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence 4688889999999999999999999999865 466665543 22 2 4789999999997764
No 116
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.03 E-value=3.2e-09 Score=107.19 Aligned_cols=57 Identities=21% Similarity=0.349 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~ 309 (533)
...+.+.+.+.+++.|++|+++++|++|..++ +. +.+.++++++.+|.||+|+|...
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~-~~v~~~~~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDD--NG-FGVETSGGEYEADKVILATGGLS 160 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC--Ce-EEEEECCcEEEcCEEEECCCCcc
Confidence 34677888888888999999999999998764 43 34555666899999999999754
No 117
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=99.02 E-value=3.5e-07 Score=92.49 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=32.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
+||+|||||++|++||+.|+++|++|+|+|+....
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~ 35 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN 35 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 58999999999999999999999999999997543
No 118
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.01 E-value=6.2e-08 Score=97.08 Aligned_cols=55 Identities=24% Similarity=0.149 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhh
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 309 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~ 309 (533)
.+-+.+.+.+. .++.++++++|++|+..+ +.+..+..++.+++|+.||-|.|+..
T Consensus 88 ~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~--~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 88 DFYEFLLERAA-AGGVIRLNARVTSIEETG--DGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred HHHHHHHHHhh-hCCeEEEccEEEEEEecC--ceEEEEECCCCEEEeeEEEECCCccc
Confidence 45566777777 566788999999999886 43333444556999999999988543
No 119
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=99.00 E-value=3.5e-07 Score=92.39 Aligned_cols=61 Identities=23% Similarity=0.304 Sum_probs=45.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
.+||+|||||++||++|..|+++|++|+|+|+.+...-.-+.|... ..++..+.++++|+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~---l~~~~~~~L~~lGl~ 62 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGV---LEQGTVDLLREAGVD 62 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEee---ECHHHHHHHHHCCCh
Confidence 4799999999999999999999999999999987421000122222 234567888889876
No 120
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.00 E-value=3.2e-08 Score=103.87 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=47.0
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe--CCe--eeec-CEEEEccChhhHH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGISTLQ 311 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~--~~~--~~~a-d~VV~a~~~~~~~ 311 (533)
..|+..|.+.++++|++|+++++|+++..++ ++|++|.. +++ .+.+ +.||+|+|.....
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCcccc
Confidence 5788999999999999999999999998754 78887743 232 4556 5799999988643
No 121
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.00 E-value=4.1e-08 Score=101.24 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHhc-CCEEEcCceeeEEEeccCCceEEEEEeCC-eeeecCEEEEccChhhH
Q 009508 252 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTL 310 (533)
Q Consensus 252 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~~v~~v~~~~-~~~~ad~VV~a~~~~~~ 310 (533)
.+...+.+.+++. |++++. ..|+++..++ ++.+.+|.+.+ ..+.||.||+|+|.+..
T Consensus 97 ~y~~~L~e~Le~~pgV~Ile-~~Vv~li~e~-~g~V~GV~t~~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLFQ-GEVEDLILED-NDEIKGVVTQDGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred HHHHHHHHHHHcCCCcEEEE-eEEEEEEEec-CCcEEEEEECCCCEEECCEEEEccCcccC
Confidence 3455667777776 677764 5788887663 36677777664 47999999999999953
No 122
>PRK06753 hypothetical protein; Provisional
Probab=99.00 E-value=1.3e-07 Score=95.23 Aligned_cols=58 Identities=26% Similarity=0.414 Sum_probs=43.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
+||+|||||++||++|..|+++|++|+|+|+++.+.- .|. . ..-.++..+.++.+|+.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~---~g~-g-i~l~~~~~~~L~~~gl~ 58 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKE---VGA-G-IGIGDNVIKKLGNHDLA 58 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccc---ccc-c-eeeChHHHHHHHhcChH
Confidence 4899999999999999999999999999999976531 121 0 11234556667777654
No 123
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.99 E-value=4.9e-09 Score=106.81 Aligned_cols=58 Identities=10% Similarity=0.180 Sum_probs=44.6
Q ss_pred chhhHHHHHHHHHh-cCCEEEcCceeeEEEeccCCceEEEEE--eCCe--eeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVV--CGKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~~~v~~v~--~~~~--~~~ad~VV~a~~~~~ 309 (533)
+..+...|.+.+++ .|++|+++++|++|..++ ++++++. .+++ .+.|+.||+|+|...
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 44688888888865 599999999999998765 6666643 2333 589999999999743
No 124
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=4.9e-09 Score=99.49 Aligned_cols=244 Identities=15% Similarity=0.227 Sum_probs=149.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC------------Ccccccc----c-----c---------cC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP------------DDISMQG----F-----W---------YP 96 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~------------~~~G~~~----~-----~---------~~ 96 (533)
.|||+|+|.|+.=...+..|+.+|.+|+.+|+++.-||. +..+.+. . + -.
T Consensus 4 eyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lmA 83 (440)
T KOG1439|consen 4 EYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLMA 83 (440)
T ss_pred ceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhhc
Confidence 399999999999999999999999999999999999996 1111000 0 0 00
Q ss_pred CCcHHHHHHHhCCCCCCccc--ccceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCCC
Q 009508 97 FRNIFSLVDELGIKPFTGWM--KSAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFDN 174 (533)
Q Consensus 97 ~~~~~~~~~~lg~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 174 (533)
...+.+++-+-++..+..+. ...++..+|..+. +|..-.. ...-+.+++.++....+++.....++.
T Consensus 84 n~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~K---------VP~t~~E--a~~s~lmgl~eKrr~~kFl~~V~n~~e 152 (440)
T KOG1439|consen 84 NGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYK---------VPATEAE--ALTSPLMGLFEKRRVMKFLKFVLNYDE 152 (440)
T ss_pred cchHHHHHHHhchhhheEEEeecceEEEECCeEEE---------CCCCHHH--HhcCCccchhHHHHHHHHHHHHhhhhh
Confidence 11222333333444333222 1122222222221 1111111 112245666777777777766666443
Q ss_pred C-chhhhccC--CccHHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHH--hhcCCcceeeecCCc
Q 009508 175 T-DVAWRKYD--SITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIIL--AHQKNFDLVWCRGTL 249 (533)
Q Consensus 175 ~-~~~~~~~~--~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~g~~ 249 (533)
. ...|..++ ..++++++.++++.+.... +..............+.++..++..+..|.. ..++.....||..|.
T Consensus 153 ~~~~~~~~~~~~k~tm~~~~~~~~l~~~~~~-f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP~yGl 231 (440)
T KOG1439|consen 153 EDPKTWQGYDLSKDTMREFLGKFGLLEGTID-FIGHAIALLCDDSYLDQPAKETLERILLYVRSFARYGKSPYLYPLYGL 231 (440)
T ss_pred hccccccccccccchHHHHHHHhccccccee-eeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhcCCCcceecccCc
Confidence 2 23344443 3489999999887765533 2111111222223456667667777666653 234444567888887
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEc
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 304 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a 304 (533)
+ .|.+.+++...--|+++.+|.++.+|.... +|+++++..+++...+..+|+-
T Consensus 232 g-EL~QgFaRlsAvyGgTYMLn~pi~ei~~~~-~gk~igvk~~~~v~~~k~vi~d 284 (440)
T KOG1439|consen 232 G-ELPQGFARLSAVYGGTYMLNKPIDEINETK-NGKVIGVKSGGEVAKCKKVICD 284 (440)
T ss_pred c-hhhHHHHHHhhccCceeecCCceeeeeccC-CccEEEEecCCceeecceEEec
Confidence 7 788888876666799999999999999855 4889999998888888866654
No 125
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.98 E-value=1e-08 Score=105.61 Aligned_cols=60 Identities=18% Similarity=0.189 Sum_probs=45.0
Q ss_pred hhhHHHHHHHHHhcC-CEEEcCceeeEEEeccCCc-eEEEEEe--CC--eeeecCEEEEccChhhHH
Q 009508 251 EKIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERC-CISDVVC--GK--ETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~~-~v~~v~~--~~--~~~~ad~VV~a~~~~~~~ 311 (533)
..+...|.+.+++.| ++|+++++|++|+.++ ++ +.+.+.. ++ .++.|++||+|+|.+...
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~-dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~ 248 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQLGHEVRDIKRND-DGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALP 248 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEeCCEEEEEEECC-CCCEEEEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence 367888988888887 7999999999999865 34 3222221 23 268999999999999754
No 126
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.98 E-value=7.7e-09 Score=102.33 Aligned_cols=69 Identities=19% Similarity=0.186 Sum_probs=56.0
Q ss_pred cCCcchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCC---eeeecCEEEEccChhhHHHhhhh
Q 009508 246 RGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK---ETYSAGAVVLAVGISTLQELIKN 316 (533)
Q Consensus 246 ~g~~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~---~~~~ad~VV~a~~~~~~~~ll~~ 316 (533)
..-.+.++.++|.+.++++|++|+.+++|+++..++ +.+..+.+++ ..++||+||+|+|.|....|..+
T Consensus 258 PSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL~a~ 329 (419)
T TIGR03378 258 PSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRNHRDIPLRADHFVLASGSFFSNGLVAE 329 (419)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecCCccceEECCEEEEccCCCcCHHHHhh
Confidence 344456899999999999999999999999999876 6666666544 38999999999999966666654
No 127
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.97 E-value=4.4e-09 Score=106.79 Aligned_cols=60 Identities=35% Similarity=0.585 Sum_probs=46.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
+++||+|||||++||++|..|+++|++|+|+|+.+.++ +.|. . ..-.++..+.++++|+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~---~~g~-g-i~l~~~~~~~l~~lg~~ 62 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG---EIGA-G-IQLGPNAFSALDALGVG 62 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc---cccc-e-eeeCchHHHHHHHcCCh
Confidence 35799999999999999999999999999999997654 2221 1 12245667788888875
No 128
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.97 E-value=1.3e-07 Score=95.21 Aligned_cols=57 Identities=14% Similarity=0.140 Sum_probs=50.8
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhh
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 309 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~ 309 (533)
..++.+|+..+++.|+.|..|++|++|.... +.+.+|++..+.+++.+||.|+|.|.
T Consensus 187 ~~lC~ala~~A~~~GA~viE~cpV~~i~~~~--~~~~gVeT~~G~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 187 AGLCQALARAASALGALVIENCPVTGLHVET--DKFGGVETPHGSIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHHhcCcEEEecCCcceEEeec--CCccceeccCcceecceEEechhHHH
Confidence 3678889988999999999999999999876 55568999888999999999999996
No 129
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.97 E-value=7.3e-08 Score=101.29 Aligned_cols=36 Identities=39% Similarity=0.603 Sum_probs=33.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.++.+|+|||||++||++|..|+++|++|+|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456899999999999999999999999999999975
No 130
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.96 E-value=4.9e-08 Score=102.80 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe--CCe--eeecC-EEEEccChhhH
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGISTL 310 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~--~~~--~~~ad-~VV~a~~~~~~ 310 (533)
+..+...|.+.+++.|++|+++++|++|..++ +++++|.. +++ .+.++ .||+|+|....
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCcCc
Confidence 34677888888888999999999999999875 67776654 332 57886 59998887754
No 131
>PRK06996 hypothetical protein; Provisional
Probab=98.96 E-value=5.2e-07 Score=91.51 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=46.0
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCC----CeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQG----FDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 43 ~~~~~~dVvVIGaG~aGL~aA~~L~~~G----~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
|..+.+||+|||||++|+++|+.|+++| ++|+|+|+.+...- ....... .-.+...++++.+|+.
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~--~~~~r~~-~l~~~~~~~L~~lg~~ 75 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAAS--ANDPRAI-ALSHGSRVLLETLGAW 75 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcC--CCCceEE-EecHHHHHHHHhCCCc
Confidence 4567789999999999999999999987 47999999754321 1111111 1244556788888865
No 132
>PRK05868 hypothetical protein; Validated
Probab=98.95 E-value=1.1e-06 Score=88.25 Aligned_cols=59 Identities=24% Similarity=0.378 Sum_probs=45.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
++||+|||||++||++|+.|+++|++|+|+|+.+.... .|. . ....++..+.++++|+.
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~---~g~-~-i~~~~~a~~~L~~lGl~ 59 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRP---GGQ-A-IDVRGPALDVLERMGLL 59 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCC---Cce-e-eeeCchHHHHHHhcCCH
Confidence 35899999999999999999999999999999876431 121 1 11235566888888875
No 133
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.95 E-value=3.6e-08 Score=104.13 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC--Ce--eeecC-EEEEccChhhH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSAG-AVVLAVGISTL 310 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~--~~--~~~ad-~VV~a~~~~~~ 310 (533)
..++..|.+.+++.|++|+++++|+++..++ +|+|++|... ++ .+.++ .||+|+|....
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~-~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDP-DGAVVGAVVEREGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECC-CCcEEEEEEEeCCcEEEEEeceeEEEecCcccC
Confidence 4577778888888999999999999999875 4788777543 32 57887 59999998864
No 134
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.94 E-value=2.1e-08 Score=105.56 Aligned_cols=40 Identities=40% Similarity=0.611 Sum_probs=37.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC--CCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN--GFGSP 85 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~--~~GG~ 85 (533)
..+||||||+|.+||+||..++++|.+|+|||+.+ ..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 45799999999999999999999999999999998 77885
No 135
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.94 E-value=1.3e-08 Score=103.99 Aligned_cols=41 Identities=34% Similarity=0.566 Sum_probs=38.5
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
...++|+|||||++||+||.+|.++|++|+|+|+++.+||.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~ 48 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGL 48 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcce
Confidence 44689999999999999999999999999999999999986
No 136
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.94 E-value=1.3e-08 Score=104.12 Aligned_cols=61 Identities=10% Similarity=0.042 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHh-cCCEEEcCceeeEEEeccCCceEEEEE-eCCe---eeecCEEEEccChhhHH
Q 009508 251 EKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVV-CGKE---TYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 251 ~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~~~v~~v~-~~~~---~~~ad~VV~a~~~~~~~ 311 (533)
..+.+.|.+.+.+ .|++|+++++|++|..++++++.+.+. ++.+ ++.||+||+|+|.|...
T Consensus 184 ~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~ 249 (497)
T PRK13339 184 GALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGAIP 249 (497)
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcchHH
Confidence 3677888888864 589999999999998773134433222 2323 68999999999999754
No 137
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.93 E-value=1.6e-08 Score=104.12 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCce-EEEEE-eC-C--eeeecCEEEEccChhhHH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC-ISDVV-CG-K--ETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~-v~~v~-~~-~--~~~~ad~VV~a~~~~~~~ 311 (533)
..++.+|.+.+++.|++|+++++|++|+.++ ++. .+.+. ++ + .+++||+||+|+|.+...
T Consensus 178 ~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~-~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~ 242 (483)
T TIGR01320 178 GALTKQLLGYLVQNGTTIRFGHEVRNLKRQS-DGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALP 242 (483)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CCeEEEEEeeccCCceEEEECCEEEECCCcchHH
Confidence 4788889999988999999999999999864 233 22222 12 2 268999999999998754
No 138
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.91 E-value=4.5e-08 Score=101.35 Aligned_cols=42 Identities=36% Similarity=0.434 Sum_probs=39.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
.+.+|||+|||||++|++||+.|++.|++|+|+|+++.+||.
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~ 43 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGG 43 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCEEEEEecccccccc
Confidence 456799999999999999999999999999999998889987
No 139
>PLN02661 Putative thiazole synthesis
Probab=98.90 E-value=4e-08 Score=94.61 Aligned_cols=41 Identities=32% Similarity=0.509 Sum_probs=36.9
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEcCCCCCCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQ-GFDVTVLDDGNGFGS 84 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~-G~~V~vlE~~~~~GG 84 (533)
....+||+|||||++|++||++|+++ |++|+|+|++..+||
T Consensus 89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GG 130 (357)
T PLN02661 89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGG 130 (357)
T ss_pred hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccccc
Confidence 33467999999999999999999986 899999999988877
No 140
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.90 E-value=1e-07 Score=98.36 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=48.2
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhH
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 310 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~ 310 (533)
+..+.+.|.+.+++.|++++.+ .|+.+..++ ++++++..+++.+.++.||+|+|.+..
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFLDGELLKFDATVIATGGFSG 176 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEECCEEEEeCeEEECCCcCcC
Confidence 4468889999998899999875 799988765 777777777778999999999998864
No 141
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.89 E-value=9.4e-09 Score=93.89 Aligned_cols=34 Identities=47% Similarity=0.758 Sum_probs=29.0
Q ss_pred EEECCCHHHHHHHHHHHHCCCe-EEEEcCCCCCCC
Q 009508 51 VVVGSGWAGLGAAHHLSKQGFD-VTVLDDGNGFGS 84 (533)
Q Consensus 51 vVIGaG~aGL~aA~~L~~~G~~-V~vlE~~~~~GG 84 (533)
+|||||++||++|++|.++|.+ |+|||+++.+||
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg 35 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGG 35 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTT
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCC
Confidence 7999999999999999999999 999999999988
No 142
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.89 E-value=8.7e-08 Score=101.44 Aligned_cols=57 Identities=18% Similarity=0.180 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe--CCe--eeecC-EEEEccChhh
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGIST 309 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~--~~~--~~~ad-~VV~a~~~~~ 309 (533)
..+...|.+.++++|++|+++++|+++..++ +++++|.. .++ .+.++ .||+|+|.+.
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 4688889988999999999999999999875 77776654 222 47786 7999999886
No 143
>PRK06370 mercuric reductase; Validated
Probab=98.89 E-value=4.1e-08 Score=101.56 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=43.6
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe-C-CeeeecCEEEEccChhhH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-G-KETYSAGAVVLAVGISTL 310 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~-~-~~~~~ad~VV~a~~~~~~ 310 (533)
..+.+.+.+.+++.|++|+++++|++|+.++ ++..+.+.. + +.++.+|.||+|+|....
T Consensus 212 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 212 EDVAAAVREILEREGIDVRLNAECIRVERDG-DGIAVGLDCNGGAPEITGSHILVAVGRVPN 272 (463)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC-CEEEEEEEeCCCceEEEeCEEEECcCCCcC
Confidence 3466677788888999999999999998764 343333332 2 347999999999996643
No 144
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.89 E-value=2.1e-07 Score=94.48 Aligned_cols=58 Identities=24% Similarity=0.442 Sum_probs=44.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
.+|+|||||++||++|..|+++|++|+|+|+.+... +.|. -..-.++..+.++++|+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~---~~g~--gi~l~~~~~~~L~~~Gl~ 60 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELS---EVGA--GLQLAPNAMRHLERLGVA 60 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccC---cCCc--cceeChhHHHHHHHCCCh
Confidence 689999999999999999999999999999987542 1121 111235667788888875
No 145
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.88 E-value=1.4e-07 Score=99.94 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe--CCe--eeec-CEEEEccChhhH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSA-GAVVLAVGISTL 310 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~--~~~--~~~a-d~VV~a~~~~~~ 310 (533)
..++..|.+.+++.|++|+++++|++|..++ +++++|.. +++ ++.+ +.||+|+|.+..
T Consensus 217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 217 NALVARLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 4688889999999999999999999998875 77766643 333 5788 999999999864
No 146
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.88 E-value=5.4e-07 Score=92.46 Aligned_cols=61 Identities=8% Similarity=0.110 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHhcC---CEEEcCceeeEEEec----cCCceEEEEEe-CCeeeecCEEEEccChhhHHH
Q 009508 252 KIFEPWMDSMRTRG---CEFLDGRRVTDFIYD----EERCCISDVVC-GKETYSAGAVVLAVGISTLQE 312 (533)
Q Consensus 252 ~l~~~l~~~l~~~G---~~i~~~~~V~~I~~~----~~~~~v~~v~~-~~~~~~ad~VV~a~~~~~~~~ 312 (533)
.+...|.+.+++.+ ++++++++|++|+.+ ++++..+.++. ++++++||.||-|-|.....+
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR 186 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSNVR 186 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCChhH
Confidence 45566777777664 899999999999753 10121123443 456899999999999887653
No 147
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.88 E-value=1.2e-07 Score=99.70 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=47.6
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe--CCe--eeecC-EEEEccChhhH
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAG-AVVLAVGISTL 310 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~--~~~--~~~ad-~VV~a~~~~~~ 310 (533)
+..|...|.+.+++.|++|+++++|+++..++ +++++|.. +++ .+.++ .||+|+|....
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 35688889999999999999999999999875 78887755 333 57785 69999988764
No 148
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.87 E-value=1.3e-08 Score=94.09 Aligned_cols=64 Identities=14% Similarity=0.195 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCe---eeecCEEEEccChhhHHHhhhhc
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE---TYSAGAVVLAVGISTLQELIKNS 317 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~---~~~ad~VV~a~~~~~~~~ll~~~ 317 (533)
++-+.|...+++.|+-+..+.+|.+.+..+ +++..+-+.+. -+++|..|+|+|....+.|..+.
T Consensus 259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~ 325 (421)
T COG3075 259 RLHNQLQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAER 325 (421)
T ss_pred hHHHHHHHHHHHcCceEecCCceeeeeeeC--CeEEEEEecccccCCCChhHeeeeccccccccchhhh
Confidence 677889999999999999999999999987 77777766542 58899999999988777666553
No 149
>PRK12839 hypothetical protein; Provisional
Probab=98.87 E-value=4.2e-08 Score=103.19 Aligned_cols=60 Identities=18% Similarity=0.142 Sum_probs=46.5
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC---Ce-ee-ecCEEEEccChhhH
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE-TY-SAGAVVLAVGISTL 310 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~---~~-~~-~ad~VV~a~~~~~~ 310 (533)
+..|+..|.+.+++.|++|+.+++|+++..++ ++++++|... +. .+ .++.||+|+|.+..
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~-~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRVSTSATSLTTDK-NGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCCEEEEEEECC-CCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 34688889999999999999999999998764 4777777532 22 33 45899999998864
No 150
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.86 E-value=7.1e-08 Score=101.21 Aligned_cols=59 Identities=19% Similarity=0.169 Sum_probs=47.0
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe-------CC--eeeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-------GK--ETYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~-------~~--~~~~ad~VV~a~~~~~ 309 (533)
+..+...|.+.+++.|++|+.++.|+++..++ ++++.++.. ++ ..+.|+.||+|+|...
T Consensus 143 G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~ 210 (541)
T PRK07804 143 GAEVQRALDAAVRADPLDIREHALALDLLTDG-TGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHHHHhCCCEEEECeEeeeeEEcC-CCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence 44688889998888999999999999999875 467776643 12 3688999999999865
No 151
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.86 E-value=2.5e-08 Score=98.00 Aligned_cols=60 Identities=25% Similarity=0.263 Sum_probs=45.8
Q ss_pred CCcchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHH
Q 009508 247 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 247 g~~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~ 311 (533)
..+.+.+.....+.|+++|++|+++++|++|+.+. +.+..+++++.++.+|+|+|.....
T Consensus 205 p~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~-----v~~~~g~~~I~~~tvvWaaGv~a~~ 264 (405)
T COG1252 205 PMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDG-----VTLKDGEEEIPADTVVWAAGVRASP 264 (405)
T ss_pred cCCCHHHHHHHHHHHHHCCCEEEcCCceEEECCCc-----EEEccCCeeEecCEEEEcCCCcCCh
Confidence 34456778888888999999999999999999764 2222222369999999999977544
No 152
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.85 E-value=2.1e-07 Score=89.56 Aligned_cols=36 Identities=39% Similarity=0.654 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
+.+|||||||++||++|..|.++|++|+|+|+...+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 468999999999999999999999999999997654
No 153
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.85 E-value=1.9e-08 Score=105.41 Aligned_cols=59 Identities=17% Similarity=0.172 Sum_probs=45.5
Q ss_pred chhhHHHHHHHHHh-cCCEEEcCceeeEEEeccCCceEEEEEe--CCe--eeecCEEEEccChh
Q 009508 250 REKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIS 308 (533)
Q Consensus 250 ~~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~~~v~~v~~--~~~--~~~ad~VV~a~~~~ 308 (533)
+..+...|.+.+++ .|++|+.++.|+++..++++++++++.. ++. .+.++.||+|+|..
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 45688888888865 4999999999999988642367777643 333 47899999999985
No 154
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.85 E-value=4.2e-08 Score=104.52 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=42.4
Q ss_pred HHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhhH
Q 009508 255 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL 310 (533)
Q Consensus 255 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~~ 310 (533)
+.|.+.+++.|++|+.++.|+++..++ ++++++.. ++. .+.|+.||+|+|....
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~g~ 233 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTADAVVLATGGYGN 233 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCEEEECCCCccc
Confidence 556666777899999999999999875 77777753 232 6889999999998653
No 155
>PRK06116 glutathione reductase; Validated
Probab=98.85 E-value=3.7e-08 Score=101.52 Aligned_cols=61 Identities=13% Similarity=0.167 Sum_probs=45.3
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHH
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~ 311 (533)
...+...+.+.+++.|++|+++++|++|+.++ ++.+.....++.++.+|.||+|+|.....
T Consensus 207 ~~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~-~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 207 DPDIRETLVEEMEKKGIRLHTNAVPKAVEKNA-DGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred CHHHHHHHHHHHHHCCcEEECCCEEEEEEEcC-CceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 34566778888899999999999999998764 34333222345689999999999865433
No 156
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.84 E-value=3.8e-09 Score=107.60 Aligned_cols=58 Identities=28% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC----CeeeecCEEEEccChhhHHHhhhh
Q 009508 257 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG----KETYSAGAVVLAVGISTLQELIKN 316 (533)
Q Consensus 257 l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~----~~~~~ad~VV~a~~~~~~~~ll~~ 316 (533)
+.+.+++.|++|++++.|+++..++ +++++|... ..++.|+.||-|+|-..+..+.+-
T Consensus 96 l~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~aG~ 157 (428)
T PF12831_consen 96 LDEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAKVFIDATGDGDLAALAGA 157 (428)
T ss_dssp ----------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccc
Confidence 4444567899999999999999986 778777654 348999999999997766655443
No 157
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=1.6e-07 Score=99.55 Aligned_cols=60 Identities=23% Similarity=0.227 Sum_probs=48.5
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhhH
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL 310 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~~ 310 (533)
+..+...|.+.+++.|++|+.++.|+++..++ +|+++++.. ++. .+.|+.||+|+|....
T Consensus 148 G~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~ 213 (598)
T PRK09078 148 GHAILHTLYQQSLKHNAEFFIEYFALDLIMDD-GGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcCEEEECCCCCcc
Confidence 45788899988888999999999999998864 477887753 232 6889999999998753
No 158
>PRK12831 putative oxidoreductase; Provisional
Probab=98.84 E-value=1e-07 Score=97.97 Aligned_cols=48 Identities=38% Similarity=0.508 Sum_probs=42.3
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccc
Q 009508 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISM 90 (533)
Q Consensus 43 ~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~ 90 (533)
...+.+||+|||||++||+||+.|++.|++|+|+|+.+.+||.+..|.
T Consensus 136 ~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gi 183 (464)
T PRK12831 136 EEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGI 183 (464)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecC
Confidence 345678999999999999999999999999999999999999755553
No 159
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.84 E-value=1.5e-07 Score=99.96 Aligned_cols=60 Identities=15% Similarity=0.192 Sum_probs=47.8
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhhH
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL 310 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~~ 310 (533)
+..+...|.+.+++.|++|+.++.++++..++ +++++++.. +++ .+.|+.||+|+|....
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g~ 251 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFVEYFALDLIMDS-DGACQGVIALNMEDGTLHRFRAHSTILATGGYGR 251 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcC-CCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCcc
Confidence 45788899988888899999999999988763 377777653 232 6789999999998753
No 160
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.84 E-value=5.2e-08 Score=97.78 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe-CC--eeeecCEEEEccChhhHHHh
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK--ETYSAGAVVLAVGISTLQEL 313 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~-~~--~~~~ad~VV~a~~~~~~~~l 313 (533)
++.+.|.+.+++.|++|+++++|+++..++ +.+..+.. ++ ..+++|.||+|+|......|
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~~~~g~~~~i~AD~VVLAtGrf~s~GL 322 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVWTRNHGDIPLRARHFVLATGSFFSGGL 322 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEeeCCceEEEECCEEEEeCCCcccCce
Confidence 688889999999999999999999999876 55544433 33 36899999999997644433
No 161
>PLN02815 L-aspartate oxidase
Probab=98.84 E-value=1.8e-07 Score=98.54 Aligned_cols=60 Identities=12% Similarity=0.211 Sum_probs=44.7
Q ss_pred chhhHHHHHHHHHhc-CCEEEcCceeeEEEeccCCc--eEEEEEe----CCe--eeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERC--CISDVVC----GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~--~v~~v~~----~~~--~~~ad~VV~a~~~~~ 309 (533)
+..+...|.+.+++. |++|+.++.++++..+++++ +++++.. ++. .+.|+.||+|+|...
T Consensus 154 G~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 222 (594)
T PLN02815 154 GREIERALLEAVKNDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGAG 222 (594)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcce
Confidence 446888888888765 89999999999999864223 2667653 232 578999999999764
No 162
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.83 E-value=1.4e-07 Score=100.10 Aligned_cols=58 Identities=26% Similarity=0.313 Sum_probs=46.6
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~ 309 (533)
+..+...|.+.+++.|++|+.++.|+++..++ ++++++.. +++ .+.|+.||+|+|...
T Consensus 128 G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 128 GHALLHTLYEQCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 44678888888888899999999999999875 77776543 332 589999999999764
No 163
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.83 E-value=1.5e-07 Score=97.73 Aligned_cols=59 Identities=20% Similarity=0.262 Sum_probs=46.4
Q ss_pred chhhHHHHHHHHHh-cCCEEEcCceeeEEEeccCCceEEEEEeC--C--eeeecCEEEEccChhhH
Q 009508 250 REKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG--K--ETYSAGAVVLAVGISTL 310 (533)
Q Consensus 250 ~~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~~~v~~v~~~--~--~~~~ad~VV~a~~~~~~ 310 (533)
+..+...|.+.+++ .|++|+.++.|++|..++ +.+.++... + ..+.++.||+|+|.+..
T Consensus 127 G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 127 GREVITTLVKKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 34688888888887 699999999999998765 666655432 2 36899999999998763
No 164
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.82 E-value=1.6e-07 Score=99.38 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=46.9
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~ 309 (533)
+..+...|.+.+++.|++|+.++.|+++..++ +++.++.. +++ .+.|+.||+|+|...
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 45788899998888899999999999998765 77666542 232 589999999999875
No 165
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.82 E-value=1.1e-07 Score=100.40 Aligned_cols=60 Identities=13% Similarity=0.154 Sum_probs=48.4
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhhH
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGISTL 310 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~~ 310 (533)
+..|...|.+.+++.|++|+.++.|+++..++ +|+++++.. +++ .+.|+.||+|+|....
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~~ 207 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQ-DGAVVGCTAICIETGEVVYFKARATVLATGGAGR 207 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECC-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCCccc
Confidence 55788889888888899999999999999864 478887754 232 5789999999998753
No 166
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.82 E-value=9.5e-08 Score=98.16 Aligned_cols=57 Identities=25% Similarity=0.211 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 310 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~ 310 (533)
+.+...+.+.+++.|++++++++|++|+.++ +.+ .+..+++++.+|.||+|+|....
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~--~~v-~v~~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDG--DQV-LVVTEDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecC--CEE-EEEECCeEEEcCEEEEeeCCCCC
Confidence 3555666677888999999999999998754 443 34456678999999999987644
No 167
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.81 E-value=4.1e-07 Score=86.79 Aligned_cols=64 Identities=17% Similarity=0.329 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCC----------------eeeecCEEEEccChh--hHHHh
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK----------------ETYSAGAVVLAVGIS--TLQEL 313 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~----------------~~~~ad~VV~a~~~~--~~~~l 313 (533)
++++.|.+..++.|++|.-+-.+.+|..+. +|.|.++.+++ -++.|+.-|+|-|-. ...++
T Consensus 184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~e-dgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi 262 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYPGFAASEVLYDE-DGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQI 262 (621)
T ss_pred HHHHHHHHHHHhhCceeccccchhheeEcC-CCcEeeEeeccccccCCCCccccccccceecceeEEEeccccchhHHHH
Confidence 578888999999999999999999999987 68888876631 157888888876544 33444
Q ss_pred hhh
Q 009508 314 IKN 316 (533)
Q Consensus 314 l~~ 316 (533)
+..
T Consensus 263 ~kk 265 (621)
T KOG2415|consen 263 IKK 265 (621)
T ss_pred HHH
Confidence 443
No 168
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.81 E-value=6.6e-08 Score=102.35 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=47.2
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~ 309 (533)
+..|...|.+.+.+.|++|+.++.|+++..++ +|+++++.. ++. .+.++.||+|+|...
T Consensus 147 G~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 147 GHALLHTLYQQNVAAKTQFFVEWMALDLIRDA-DGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred hHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcC-CCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 45788889888888999999999999999864 477777653 232 578999999999865
No 169
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=2.4e-07 Score=97.68 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=47.4
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~ 309 (533)
+..+...|.+.+++.|++|+.++.++++..++ |+++++.. +++ .+.|+.||+|+|...
T Consensus 135 G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 198 (566)
T PRK06452 135 GMALLHTLFERTSGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKTKAVVLATGGMG 198 (566)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEeCeEEECCCccc
Confidence 44688889888888899999999999999875 88887753 222 678999999999875
No 170
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.80 E-value=6.9e-08 Score=106.59 Aligned_cols=66 Identities=32% Similarity=0.417 Sum_probs=50.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCC---cHHHHHHHhCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFR---NIFSLVDELGIK 110 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~---~~~~~~~~lg~~ 110 (533)
...++|+|||||+|||+||+.|+++|++|+|||+.+.+||.+..|...+.-... ...+.++++|++
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~ 372 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGR 372 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCe
Confidence 356899999999999999999999999999999999999976666443321111 123455666766
No 171
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.80 E-value=1.2e-07 Score=97.53 Aligned_cols=61 Identities=8% Similarity=0.027 Sum_probs=45.3
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe-CC-eeeecCEEEEccChhhHHH
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GK-ETYSAGAVVLAVGISTLQE 312 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~-~~-~~~~ad~VV~a~~~~~~~~ 312 (533)
...+.+.+.+.+++.|++++++++|++|..++ ++.+ .+.. ++ ..+.+|.||+|+|......
T Consensus 206 d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~-~~~~-~v~~~~g~~~i~~D~vi~a~G~~pn~~ 268 (450)
T TIGR01421 206 DSMISETITEEYEKEGINVHKLSKPVKVEKTV-EGKL-VIHFEDGKSIDDVDELIWAIGRKPNTK 268 (450)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeC-CceE-EEEECCCcEEEEcCEEEEeeCCCcCcc
Confidence 44566778888888999999999999998754 2422 2333 34 4799999999999765544
No 172
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.80 E-value=1.7e-07 Score=99.24 Aligned_cols=59 Identities=24% Similarity=0.244 Sum_probs=47.4
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC--Ce--eeec-CEEEEccChhhH
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE--TYSA-GAVVLAVGISTL 310 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~--~~--~~~a-d~VV~a~~~~~~ 310 (533)
+..++..|.+.++++|++|+++++|+++..++ +++++|... ++ .+.+ +.||+|+|....
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~ 283 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFNR 283 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCccc
Confidence 34688999999999999999999999998765 777776543 32 4676 689999998865
No 173
>PTZ00367 squalene epoxidase; Provisional
Probab=98.78 E-value=2e-06 Score=89.90 Aligned_cols=62 Identities=24% Similarity=0.225 Sum_probs=45.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC-CCCCcccccccccCCCcHHHHHHHhCCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF-GSPDDISMQGFWYPFRNIFSLVDELGIKP 111 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~-GG~~~~G~~~~~~~~~~~~~~~~~lg~~~ 111 (533)
+..+||+|||||++|+++|+.|+++|++|+|+|+.... ..+ ..|. .-.++..+.++++|+.+
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r-~~G~----~L~p~g~~~L~~LGL~d 93 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDR-IVGE----LLQPGGVNALKELGMEE 93 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccch-hhhh----hcCHHHHHHHHHCCChh
Confidence 35689999999999999999999999999999997521 001 0111 12455677888898763
No 174
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.78 E-value=1.5e-07 Score=96.82 Aligned_cols=38 Identities=24% Similarity=0.469 Sum_probs=35.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
+|||+|||||++|++||..+++.|++|+|+|+. .+||.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~GG~ 39 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP-RVGGT 39 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC-ccCce
Confidence 589999999999999999999999999999984 78885
No 175
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.77 E-value=1.1e-07 Score=101.11 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=47.3
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~ 309 (533)
+..+...|.+.+++.|++|+.+++|+++..++ +|++.++.. +++ .+.|+.||+|+|...
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 229 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFIEYFALDLIMDE-DGECRGVIAMSMEDGSIHRFRAHYTVIATGGYG 229 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEeceEEEEEEECC-CCEEEEEEEEECCCCeEEEEECCcEEEeCCCCc
Confidence 45788899998888999999999999998843 378887753 232 678999999998764
No 176
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.77 E-value=3.3e-07 Score=96.44 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=46.2
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~ 309 (533)
+..+...|.+.+++.|++|+++++|+++..++ +++++++.. +++ .+.|+.||+|+|...
T Consensus 133 G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~-~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 197 (543)
T PRK06263 133 GHEMMMGLMEYLIKERIKILEEVMAIKLIVDE-NREVIGAIFLDLRNGEIFPIYAKATILATGGAG 197 (543)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeC-CcEEEEEEEEECCCCcEEEEEcCcEEECCCCCC
Confidence 34688888888888899999999999999875 344666542 332 688999999999764
No 177
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.77 E-value=9.2e-08 Score=102.15 Aligned_cols=58 Identities=19% Similarity=0.148 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~ 309 (533)
+..+...|.+.+.+.|++|+.++.|+++..++ |+++++.. +++ .+.|+.||+|+|...
T Consensus 157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g 220 (657)
T PRK08626 157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVAKATLIATGGYG 220 (657)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 34677788888888999999999999999875 77766543 232 567999999999765
No 178
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.76 E-value=1.3e-07 Score=91.79 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=46.9
Q ss_pred HHHHHHHHhc-CCEEEcCceeeEEEeccCCceEEEEEeC---C----eeeecCEEEEccChhhHHHhhhhccc
Q 009508 255 EPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVCG---K----ETYSAGAVVLAVGISTLQELIKNSIL 319 (533)
Q Consensus 255 ~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~~v~~v~~~---~----~~~~ad~VV~a~~~~~~~~ll~~~~~ 319 (533)
..+...+.+. +.+|++++.|++|..+++++++++|... + ..+.++.||+|+|...+.+||..+..
T Consensus 196 ~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 196 TTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 3344344344 8999999999999776335777777643 2 25678999999999999999887743
No 179
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.76 E-value=3.1e-07 Score=95.86 Aligned_cols=40 Identities=25% Similarity=0.605 Sum_probs=36.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
+..+||||||+| +||+||++++++|.+|+|||+.+..||.
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~ 44 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGT 44 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence 347899999999 9999999999999999999999888885
No 180
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.76 E-value=1.3e-05 Score=78.20 Aligned_cols=60 Identities=25% Similarity=0.245 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCC-eeeecCEEEEccChhhHHHhh
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK-ETYSAGAVVLAVGISTLQELI 314 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~-~~~~ad~VV~a~~~~~~~~ll 314 (533)
.++..+.+.++++|++|+++++|+.|...+ +.+.++.+.+ .++.+|+||+|.|-.. ++++
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~--~~~~~v~~~~g~~i~~~~vvlA~Grsg-~dw~ 234 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIED--NEVLGVKLTKGEEIEADYVVLAPGRSG-RDWF 234 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecC--CceEEEEccCCcEEecCEEEEccCcch-HHHH
Confidence 567788888999999999999999999987 5555666654 5999999999988553 3344
No 181
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.76 E-value=6.8e-08 Score=99.14 Aligned_cols=47 Identities=34% Similarity=0.455 Sum_probs=41.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCccc
Q 009508 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDIS 89 (533)
Q Consensus 43 ~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G 89 (533)
.+...++|+|||||++||++|+.|++.|++|+|+|+.+.+||.+..|
T Consensus 129 ~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g 175 (449)
T TIGR01316 129 APSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYG 175 (449)
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeec
Confidence 34456899999999999999999999999999999999999865444
No 182
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=6.7e-08 Score=102.96 Aligned_cols=39 Identities=31% Similarity=0.353 Sum_probs=35.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGS 84 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG 84 (533)
..+||||||||+|||+||..++++|.+|+|||+....||
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g 45 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKA 45 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCC
Confidence 457999999999999999999999999999999976655
No 183
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.75 E-value=1.2e-07 Score=92.37 Aligned_cols=36 Identities=22% Similarity=0.424 Sum_probs=33.4
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGS 84 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG 84 (533)
+||+|||||++||++|..|++.|++|+|+|+++ .||
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg 36 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGG 36 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCc
Confidence 699999999999999999999999999999885 555
No 184
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.75 E-value=4.1e-07 Score=96.37 Aligned_cols=40 Identities=33% Similarity=0.358 Sum_probs=36.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
.+.||+|||+|++||+||..++++|.+|+||||....||.
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~ 41 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH 41 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 4569999999999999999999999999999999876663
No 185
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=98.74 E-value=2.8e-06 Score=85.66 Aligned_cols=57 Identities=16% Similarity=0.100 Sum_probs=46.0
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCe-eeecCEEEEccChhhHH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKE-TYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~-~~~ad~VV~a~~~~~~~ 311 (533)
..++..|.+.+++ |++|+.+++|++|+.++ +. +.++++++ .+.||+||+|+|+|...
T Consensus 135 ~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~--~~-~~v~t~~g~~~~a~~vV~a~G~~~~~ 192 (381)
T TIGR03197 135 PQLCRALLAHAGI-RLTLHFNTEITSLERDG--EG-WQLLDANGEVIAASVVVLANGAQAGQ 192 (381)
T ss_pred HHHHHHHHhccCC-CcEEEeCCEEEEEEEcC--Ce-EEEEeCCCCEEEcCEEEEcCCccccc
Confidence 4678888888888 99999999999999875 44 34555554 58999999999999654
No 186
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.74 E-value=1.7e-07 Score=100.78 Aligned_cols=46 Identities=33% Similarity=0.545 Sum_probs=41.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccc
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISM 90 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~ 90 (533)
.+.++|+|||||++||++|+.|++.|++|+|+|+.+.+||.+..|.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gi 370 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGI 370 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecC
Confidence 3567999999999999999999999999999999999999755553
No 187
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=4.3e-07 Score=85.51 Aligned_cols=241 Identities=15% Similarity=0.180 Sum_probs=138.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC------------Cccc--------ccc---------ccc
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP------------DDIS--------MQG---------FWY 95 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~------------~~~G--------~~~---------~~~ 95 (533)
...|||+|+|.|+.-...+..|+-+|.+|+++|+++.-|+. ++.+ ... +.-
T Consensus 4 ~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~ 83 (434)
T COG5044 4 ETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLF 83 (434)
T ss_pred cccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhc
Confidence 34799999999999999999999999999999999999986 1111 000 000
Q ss_pred CCCcHHHHHHHhCCCCCCcccc--cceecCCCceecccccccCCCCCCCcccchhhhhcCCCHHhhhhcchhhHHhhcCC
Q 009508 96 PFRNIFSLVDELGIKPFTGWMK--SAQYSEEGLEVEFPIFQDLNQLPTPLGTLFYTQFSRLPLVDRLTSLPLMAAVIDFD 173 (533)
Q Consensus 96 ~~~~~~~~~~~lg~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 173 (533)
....+..++.+.|+..+..+.. ..++..++..+. +|.. ..-..+-+.+++.++....+++.-+..+.
T Consensus 84 A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~k---------VP~n--e~ei~~s~~lsL~eKr~vmrFl~~V~n~~ 152 (434)
T COG5044 84 ANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYK---------VPYN--EAEIFTSPLLSLFEKRRVMRFLKWVSNYA 152 (434)
T ss_pred ccchHHHHHHHhChHhheeeeeccccEEecCCcEEE---------CCcc--HHhhhcCCCcchhhHHHHHHHHHHHHhHH
Confidence 1122334444445543333221 112222222221 1111 11012224566666655555554333333
Q ss_pred CCchhhhccCC-c-cHHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHh--hcCCcceeeecCCc
Q 009508 174 NTDVAWRKYDS-I-TARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILA--HQKNFDLVWCRGTL 249 (533)
Q Consensus 174 ~~~~~~~~~~~-~-s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~~~g~~ 249 (533)
.....|..+.. . +++.....++++.+....+...++. . .+ .+.++..+...+..|+.. ..+.+...||+-|.
T Consensus 153 ~~~~~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l-~--ld-l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~YGl 228 (434)
T COG5044 153 EQKSTLQELYESKDTMEFLFEKFGLSGATEEFIGHGIAL-S--LD-LDIPAREALERILRYMRSFGDYGKSPYLYPRYGL 228 (434)
T ss_pred hhhhhchhhhhcccHHHHHHHHHccCcchhhhhhhhhhh-h--cc-ccCCchHHHHHHHHHHHhhcccCCCcceeeccCc
Confidence 22222333322 2 3444455677765554433333221 1 12 566677777777666543 24455567788665
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEc
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLA 304 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a 304 (533)
+ .|.+.+++...--|+++.+|+++.+|.... . |.+|..+..+..|..||..
T Consensus 229 ~-El~QGFaRssav~GgtymLn~~i~ein~tk--~-v~~v~~~~~~~ka~KiI~~ 279 (434)
T COG5044 229 G-ELSQGFARSSAVYGGTYMLNQAIDEINETK--D-VETVDKGSLTQKAGKIISS 279 (434)
T ss_pred h-hhhHHHHHhhhccCceeecCcchhhhcccc--c-eeeeecCcceeecCcccCC
Confidence 5 788888877666799999999999998764 2 3456666678888888875
No 188
>PTZ00058 glutathione reductase; Provisional
Probab=98.73 E-value=1.5e-07 Score=98.38 Aligned_cols=47 Identities=17% Similarity=0.395 Sum_probs=40.1
Q ss_pred CCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC-Cccc
Q 009508 42 NNGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP-DDIS 89 (533)
Q Consensus 42 ~~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~-~~~G 89 (533)
.+...+|||||||||.+|++||..+++.|.+|+|+|++ .+||. ++.|
T Consensus 43 ~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln~G 90 (561)
T PTZ00058 43 KKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVNVG 90 (561)
T ss_pred cCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccccC
Confidence 34456799999999999999999999999999999986 68886 4444
No 189
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.72 E-value=2.7e-06 Score=84.88 Aligned_cols=36 Identities=31% Similarity=0.567 Sum_probs=33.6
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCCCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQ--GFDVTVLDDGNGFGS 84 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~--G~~V~vlE~~~~~GG 84 (533)
||+|||||++||++|+.|+++ |++|+|+|+.+.+||
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 799999999999999999997 999999999987765
No 190
>PRK08275 putative oxidoreductase; Provisional
Probab=98.71 E-value=6.2e-07 Score=94.62 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhh
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~ 309 (533)
..+.+.|.+.+++.|++|+.++.|++|..++ ++++.++.. ++. .+.++.||+|+|...
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDA-DGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcC-CCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 4678888888888999999999999999873 367776642 232 588999999999864
No 191
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.71 E-value=1.1e-07 Score=98.92 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC---Ce--eeecCEEEEccChhhH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG---KE--TYSAGAVVLAVGISTL 310 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~---~~--~~~ad~VV~a~~~~~~ 310 (533)
..+.+.|.+.++ .|++|+.++.|+++..++ +++.++... ++ .+.|+.||+|+|....
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~~ 191 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYADYVVLASGGCGG 191 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEcCeEEEecCCCcc
Confidence 457777777765 599999999999998765 777766542 22 6889999999998653
No 192
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.70 E-value=6.3e-07 Score=95.22 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhcC-CEEEcCceeeEEEeccCCceEEEEE---e-CCe--eeecCEEEEccChhh
Q 009508 252 KIFEPWMDSMRTRG-CEFLDGRRVTDFIYDEERCCISDVV---C-GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 252 ~l~~~l~~~l~~~G-~~i~~~~~V~~I~~~~~~~~v~~v~---~-~~~--~~~ad~VV~a~~~~~ 309 (533)
.+...|.+.+++.| ++|+.++.|+++..++ ++++++. . +++ .+.|+.||+|+|.+.
T Consensus 133 ~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (608)
T PRK06854 133 SYKPIVAEAAKKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKAKAVIVATGGAA 195 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEECCEEEECCCchh
Confidence 56777877777765 9999999999998765 6666653 2 232 689999999999865
No 193
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.69 E-value=1.9e-07 Score=86.55 Aligned_cols=41 Identities=37% Similarity=0.550 Sum_probs=35.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC--CCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG--FGSP 85 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~--~GG~ 85 (533)
...+||||||||++||.||.+|+.+|++|+|+|.... +||.
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQ 45 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQ 45 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccce
Confidence 4568999999999999999999999999999998643 4553
No 194
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.68 E-value=1.4e-06 Score=82.48 Aligned_cols=40 Identities=28% Similarity=0.443 Sum_probs=35.8
Q ss_pred CCCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 41 NNNGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 41 ~~~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
+...+...||||||||++|.+.|+.|++.|.+|+|+||+-
T Consensus 39 ~~~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl 78 (509)
T KOG1298|consen 39 EARNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDL 78 (509)
T ss_pred hhccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEeccc
Confidence 4455667899999999999999999999999999999973
No 195
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.68 E-value=4.1e-07 Score=94.22 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC--CeeeecCEEEEccChhhHH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~--~~~~~ad~VV~a~~~~~~~ 311 (533)
..+...+.+.+++.|++++++++|++|+.++ ++..+.+..+ +.++.+|.||+|+|.....
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~-~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 207 PEISAAVEEALAEEGIEVVTSAQVKAVSVRG-GGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEcC-CEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 4566677778888999999999999998764 2332333322 3579999999999965443
No 196
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=2.5e-07 Score=88.74 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhh
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 309 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~ 309 (533)
.|.+.+.+..+..|+++.. ..|.+++..+ . ...+.+++++++++.||+|+|...
T Consensus 62 ~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~--~-~F~v~t~~~~~~ak~vIiAtG~~~ 115 (305)
T COG0492 62 ELMEQMKEQAEKFGVEIVE-DEVEKVELEG--G-PFKVKTDKGTYEAKAVIIATGAGA 115 (305)
T ss_pred HHHHHHHHHHhhcCeEEEE-EEEEEEeecC--c-eEEEEECCCeEEEeEEEECcCCcc
Confidence 3445566666777888887 6788888764 3 455777766799999999999763
No 197
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.67 E-value=1.8e-07 Score=95.77 Aligned_cols=56 Identities=27% Similarity=0.259 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC-CeeeecCEEEEccChhh
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIST 309 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~-~~~~~ad~VV~a~~~~~ 309 (533)
.+-..|.+.+++.|++++.+ +|+++..++ +|.+..|++. +.+++||.||=|+|...
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g-~V~~v~~~~-~g~i~~v~~~~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEG-TVVDVELDE-DGRITAVRLDDGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-T-TSEEEEEEETTSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeC-EEEEEEEcC-CCCEEEEEECCCCEEEEeEEEECCCccc
Confidence 45566777788899999887 488888876 6888888875 56899999999999764
No 198
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.65 E-value=5.9e-07 Score=95.22 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=45.3
Q ss_pred chhhHHHHHHHHHh-cCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~ 309 (533)
+..+...|.+.+.+ .|++|+.++.|+++..++ ++++++.. +++ .+.|+.||+|+|...
T Consensus 136 G~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (577)
T PRK06069 136 GFYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQAKAGIIATGGAG 200 (577)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence 34688888888766 689999999999998875 77766542 233 588999999999874
No 199
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.65 E-value=1.3e-06 Score=99.59 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=37.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
...||||||+|.+||+||...+++|.+|+||||.+..||.
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence 4589999999999999999999999999999999998885
No 200
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.64 E-value=5.9e-07 Score=94.29 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=45.1
Q ss_pred chhhHHHHHHHHHhc-CCEEEcCceeeEEEecc----CCceEEEEEe----CCe--eeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDE----ERCCISDVVC----GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~----~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~ 309 (533)
+..+...|.+.+.+. |++|+.++.|+++..++ ++++++++.. +++ .+.++.||+|+|...
T Consensus 137 G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 137 GKAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 446778888877665 89999999999998653 1267777653 232 588999999999875
No 201
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.64 E-value=1.6e-07 Score=104.63 Aligned_cols=65 Identities=32% Similarity=0.430 Sum_probs=49.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCC---CcHHHHHHHhCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPF---RNIFSLVDELGIK 110 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~---~~~~~~~~~lg~~ 110 (533)
+.++|+|||||++||+||+.|+++|++|+|+|+.+.+||.+..|...+.... ....+.++.+|++
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~ 496 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVK 496 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCE
Confidence 4579999999999999999999999999999999999997665543332111 1233455666765
No 202
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.64 E-value=8.6e-07 Score=91.49 Aligned_cols=46 Identities=39% Similarity=0.629 Sum_probs=40.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCccc
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDIS 89 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G 89 (533)
+...++|+|||||++||++|+.|+++|++|+|+|+++.+||.+..|
T Consensus 137 ~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~g 182 (457)
T PRK11749 137 PKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYG 182 (457)
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeecc
Confidence 4456899999999999999999999999999999999999864443
No 203
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.64 E-value=3.1e-07 Score=84.75 Aligned_cols=37 Identities=32% Similarity=0.585 Sum_probs=35.2
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
.|||||+|++||+|+..|...|-.|+|+|+...+||.
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGN 47 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGN 47 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCc
Confidence 6999999999999999999998889999999999996
No 204
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.64 E-value=1.2e-05 Score=75.08 Aligned_cols=79 Identities=20% Similarity=0.218 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhhhhcCCCCCccccceeeeCCCCccccCCCccccCC--CCCCCCCceEEecccccCCCCCchhhHHH
Q 009508 399 KDDQVVAKAVSYLSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMM--RGFTSFPNLFMAGDWITTRHGSWSQERSY 476 (533)
Q Consensus 399 ~~~ei~~~~~~~l~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~p--~~~~~~~~l~~aG~~~~~g~~~~~iegA~ 476 (533)
+.+-..+.+.-.|....|.+..+++...|.. ++-. ..++..+ +...-..|||+|-.+. |+ ++..++
T Consensus 402 D~d~F~qkiwP~L~nRVP~fetakVqsaWaG-----yyD~--NtfD~ngViG~HP~y~Nly~atGFs--gh---Gvqqs~ 469 (509)
T KOG2853|consen 402 DHDYFYQKIWPHLANRVPAFETAKVQSAWAG-----YYDH--NTFDDNGVIGEHPLYTNLYMATGFS--GH---GVQQSP 469 (509)
T ss_pred ChHHHHhhhhHHHHhcccccceeeeeehhcc-----cccc--cccccCCcccCCcceeeeeeeeccc--cc---chhcch
Confidence 4456678888899999998766555544332 1111 1111111 1122347899998777 54 467788
Q ss_pred HHHHHHHHHHHHH
Q 009508 477 VTGLEAANRVVDY 489 (533)
Q Consensus 477 ~SG~~aA~~Il~~ 489 (533)
..|+..|+.|++.
T Consensus 470 avgRAiaElIldG 482 (509)
T KOG2853|consen 470 AVGRAIAELILDG 482 (509)
T ss_pred HHHHHHHHHHhcC
Confidence 8999999999864
No 205
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.63 E-value=8.4e-07 Score=94.05 Aligned_cols=60 Identities=28% Similarity=0.352 Sum_probs=47.1
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccC--CceEEEEEe----CCe--eeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE--RCCISDVVC----GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~--~~~v~~v~~----~~~--~~~ad~VV~a~~~~~ 309 (533)
+..+...|.+.+++.|++|+.++.|+++..+++ +|++.++.. +++ .+.|+.||+|+|...
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 456888899888889999999999999987641 167776643 233 578999999999875
No 206
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.63 E-value=4.5e-07 Score=92.96 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=47.8
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC--CeeeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~--~~~~~ad~VV~a~~~~~ 309 (533)
+..+.+.|.+.++++|++|+++++|++|..++++++++++... +.++.++.||+|+|...
T Consensus 122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~ 183 (432)
T TIGR02485 122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG 183 (432)
T ss_pred HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence 3468889999999999999999999999876213677766543 24789999999999654
No 207
>PLN02546 glutathione reductase
Probab=98.63 E-value=8e-07 Score=92.96 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=31.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDD 78 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~ 78 (533)
..+|||+|||||.+|+.||..+++.|++|+|+|+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3458999999999999999999999999999996
No 208
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.63 E-value=8.5e-07 Score=93.59 Aligned_cols=58 Identities=26% Similarity=0.211 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHh-cCCEEEcCceeeEEEeccCCceEEEEEe----CC--eeeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~--~~~~ad~VV~a~~~~~ 309 (533)
+..|...|.+.+.+ .++++..++.|+++..++ ++++++.. ++ ..+.|+.||+|+|...
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 195 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILADAVVLATGGAG 195 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEecCEEEEcCCCCc
Confidence 45788888888766 479999999999999875 77776642 33 2688999999999865
No 209
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.62 E-value=9.9e-07 Score=93.56 Aligned_cols=59 Identities=24% Similarity=0.245 Sum_probs=43.5
Q ss_pred chhhHHHHHHHHHh----cCCEEEcCceeeEEEeccCCceEEEEEe----CC--eeeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRT----RGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~----~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~--~~~~ad~VV~a~~~~~ 309 (533)
+..+...|.+.+++ .|++|+.+++|+++..++ +++++++.. ++ ..+.|+.||+|+|...
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd-~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~g 196 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVD-GNRARGIIARNLVTGEIETHSADAVILATGGYG 196 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcC-CCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 34566666666543 389999999999998864 467777753 23 2578999999998753
No 210
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.62 E-value=4.4e-06 Score=82.81 Aligned_cols=197 Identities=10% Similarity=0.021 Sum_probs=111.0
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhhccccCchhHHhhcc
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLN 330 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~ 330 (533)
..++..+.+.+.++|++|+.+++|++|..++ +.+.+|.++++++.||.||+|+|++... +.+ . + +..
T Consensus 137 ~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~--~~~~~v~~~~g~~~a~~vV~a~G~~~~~-l~~-~--~-------~~~ 203 (337)
T TIGR02352 137 RALLKALEKALEKLGVEIIEHTEVQHIEIRG--EKVTAIVTPSGDVQADQVVLAAGAWAGE-LLP-L--P-------LRP 203 (337)
T ss_pred HHHHHHHHHHHHHcCCEEEccceEEEEEeeC--CEEEEEEcCCCEEECCEEEEcCChhhhh-ccc-C--C-------ccc
Confidence 4788889999999999999999999999875 6677777777799999999999998765 433 1 1 111
Q ss_pred CcceeeEEEEEEeccCCCCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecCCCCCCCCCHHHHHHHHHHH
Q 009508 331 LASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSY 410 (533)
Q Consensus 331 l~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ei~~~~~~~ 410 (533)
... ..+.+..+.............. . ...++.+ ..++.++.........+......+..+.+++.
T Consensus 204 ~~g-----~~~~~~~~~~~~~~~~~~~~~~-~-~~~y~~p--------~~~g~~~iG~~~~~~~~~~~~~~~~~~~l~~~ 268 (337)
T TIGR02352 204 VRG-----QPLRLEAPAVPLLNRPLRAVVY-G-RRVYIVP--------RRDGRLVVGATMEESGFDTTPTLGGIKELLRD 268 (337)
T ss_pred cCc-----eEEEeeccccccCCcccceEEE-c-CCEEEEE--------cCCCeEEEEEeccccCccCCCCHHHHHHHHHH
Confidence 110 0112221100000000000000 0 0111111 02233322222222222223346678889999
Q ss_pred HhhhhcCCCCCccccceeeeCCCCccccCCCccccCCCCC--CCCCceEEecccccCCCCCchhhHHHHHHHHHHHHHHH
Q 009508 411 LSKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYMMRGF--TSFPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 488 (533)
Q Consensus 411 l~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~p~~~--~~~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~ 488 (533)
+.++||.+.+..+...+.. ....++. ..|-+. ...+|+|+++.+... ++--+...|+..|+.|+.
T Consensus 269 ~~~~~P~l~~~~~~~~~~g-----~r~~t~D---~~piig~~~~~~~~~~~~g~~g~-----G~~~~p~~g~~la~~i~~ 335 (337)
T TIGR02352 269 AYTILPALKEARLLETWAG-----LRPGTPD---NLPYIGEHPEDRRLLIATGHYRN-----GILLAPATAEVIADLILG 335 (337)
T ss_pred HHHhCCCcccCcHHHheec-----CCCCCCC---CCCEeCccCCCCCEEEEcccccC-----ceehhhHHHHHHHHHHhc
Confidence 9999998765444333322 2222332 233222 235799999877743 345578899999999874
No 211
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.62 E-value=2.9e-07 Score=96.29 Aligned_cols=39 Identities=26% Similarity=0.443 Sum_probs=34.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGS 84 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG 84 (533)
....+||+|||||++||+||..|++.|++|+|+|. ++||
T Consensus 209 ~~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG 247 (515)
T TIGR03140 209 QLDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGG 247 (515)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCC
Confidence 34569999999999999999999999999999984 5777
No 212
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.62 E-value=1.5e-07 Score=95.97 Aligned_cols=58 Identities=22% Similarity=0.411 Sum_probs=44.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G-~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
++|+|||||++||++|..|+++| .+|+|+|+.+.++. .|.- ..-.++..+.++++|+.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~---~G~g--i~l~~~~~~~L~~lg~~ 59 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGE---VGAG--VSFGANAVRAIVGLGLG 59 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCC---Cccc--eeeCccHHHHHHHcCCh
Confidence 47999999999999999999998 59999999876542 1211 12245667778888765
No 213
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.62 E-value=3.5e-07 Score=95.75 Aligned_cols=39 Identities=31% Similarity=0.542 Sum_probs=34.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGS 84 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG 84 (533)
....+||+|||||++||+||.+|++.|++|+|+|+. +||
T Consensus 208 ~~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG 246 (517)
T PRK15317 208 AKDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGG 246 (517)
T ss_pred cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCC
Confidence 345689999999999999999999999999999853 777
No 214
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.61 E-value=2.6e-07 Score=101.10 Aligned_cols=46 Identities=43% Similarity=0.621 Sum_probs=41.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccc
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISM 90 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~ 90 (533)
...++|+|||||++||+||+.|+++|++|+|+|+.+.+||.+..|.
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gi 474 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGI 474 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecC
Confidence 4568999999999999999999999999999999999999765553
No 215
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.60 E-value=4.3e-07 Score=93.70 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=38.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCccccccc
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGF 93 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~ 93 (533)
+||+|||+|++|+++|+.|+++|++|+|||++...|| .-.|.+.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~-~~~g~~~~ 45 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSF-LKIGAHKK 45 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCC-Cccccccc
Confidence 6999999999999999999999999999999999886 22344443
No 216
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.59 E-value=8.8e-07 Score=91.73 Aligned_cols=39 Identities=23% Similarity=0.476 Sum_probs=36.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
..|||||||||++|++||..|++.|++|+|+|+.. +||.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~ 41 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGT 41 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccc
Confidence 56999999999999999999999999999999976 8884
No 217
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.59 E-value=6e-07 Score=90.66 Aligned_cols=41 Identities=29% Similarity=0.533 Sum_probs=38.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
+.+||+||||+|.+|..+|.++++.|.+|.++|+...+||.
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGt 42 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGT 42 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCce
Confidence 45799999999999999999999999999999999888887
No 218
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.58 E-value=1.2e-06 Score=92.82 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=44.7
Q ss_pred chhhHHHHHHHHHhc-CCEEEcCceeeEEEeccCCceEEEEEe----CC--eeeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~--~~~~ad~VV~a~~~~~ 309 (533)
+..|...|.+.+.+. +++|+.++.|+++..++ ++++++.. ++ ..+.|+.||+|+|...
T Consensus 132 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~~ 196 (582)
T PRK09231 132 GFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRANAVVMATGGAG 196 (582)
T ss_pred HHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEECCEEEECCCCCc
Confidence 446778888777664 79999999999999875 77776532 33 2688999999999765
No 219
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.58 E-value=1.4e-06 Score=90.22 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=37.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
.+|||+|||||.+|+.||..|++.|++|+|+|+.+.+||.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~ 42 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGV 42 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccc
Confidence 4699999999999999999999999999999998788884
No 220
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.56 E-value=1.7e-06 Score=89.68 Aligned_cols=39 Identities=23% Similarity=0.502 Sum_probs=36.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
..|||+|||||.+|++||..|++.|++|+|+|+. .+||.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~ 41 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGT 41 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcc
Confidence 4699999999999999999999999999999986 77885
No 221
>PRK09897 hypothetical protein; Provisional
Probab=98.56 E-value=9.4e-07 Score=91.38 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQG--FDVTVLDDGNGFG 83 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G--~~V~vlE~~~~~G 83 (533)
+++|+|||||++|+++|.+|.+.+ .+|+|||++..+|
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 358999999999999999998864 5899999988777
No 222
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.55 E-value=1.2e-06 Score=91.45 Aligned_cols=58 Identities=22% Similarity=0.352 Sum_probs=46.0
Q ss_pred chhhHHHHHHHHHhc-CCEEEcCceeeEEEeccCCceEEEEEe--CCe--eeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERCCISDVVC--GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~~v~~v~~--~~~--~~~ad~VV~a~~~~~ 309 (533)
+..+...|.+.+++. |++|+.++.|+++..++ ++++++.. +++ .+.|+.||+|+|...
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 456888888888765 89999999999998765 77776654 233 589999999999864
No 223
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.55 E-value=7.8e-07 Score=93.79 Aligned_cols=38 Identities=24% Similarity=0.519 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGS 84 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG 84 (533)
..|||+|||||++||+||..|++.|++|+|+|++ ..||
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG 40 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGG 40 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCc
Confidence 3589999999999999999999999999999985 5666
No 224
>PLN02507 glutathione reductase
Probab=98.54 E-value=3e-06 Score=88.13 Aligned_cols=61 Identities=18% Similarity=0.260 Sum_probs=45.4
Q ss_pred cchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe-CCeeeecCEEEEccChhhHHH
Q 009508 249 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQE 312 (533)
Q Consensus 249 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~-~~~~~~ad~VV~a~~~~~~~~ 312 (533)
+...+...+.+.+++.|++|+++++|++|+.++ +.+. +.. ++.++.+|.|++++|......
T Consensus 242 ~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~--~~~~-v~~~~g~~i~~D~vl~a~G~~pn~~ 303 (499)
T PLN02507 242 FDDEMRAVVARNLEGRGINLHPRTNLTQLTKTE--GGIK-VITDHGEEFVADVVLFATGRAPNTK 303 (499)
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--CeEE-EEECCCcEEEcCEEEEeecCCCCCC
Confidence 345666777788889999999999999998754 3332 333 445799999999999665443
No 225
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.54 E-value=2.9e-07 Score=90.22 Aligned_cols=53 Identities=26% Similarity=0.304 Sum_probs=40.0
Q ss_pred hHHHHHHHHHh-cCCEEEcCceeeEEEeccCCceEEEEEeC-CeeeecCEEEEccChh
Q 009508 253 IFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGIS 308 (533)
Q Consensus 253 l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~~~v~~v~~~-~~~~~ad~VV~a~~~~ 308 (533)
+...+.+.+++ .+++|. ..+|++|..++ +++++|.+. +..+.+|.||+|+|+.
T Consensus 97 y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~--~~v~GV~~~~g~~~~a~~vVlaTGtf 151 (392)
T PF01134_consen 97 YSRAMREKLESHPNLTII-QGEVTDLIVEN--GKVKGVVTKDGEEIEADAVVLATGTF 151 (392)
T ss_dssp HHHHHHHHHHTSTTEEEE-ES-EEEEEECT--TEEEEEEETTSEEEEECEEEE-TTTG
T ss_pred HHHHHHHHHhcCCCeEEE-EcccceEEecC--CeEEEEEeCCCCEEecCEEEEecccc
Confidence 34456666666 467885 67899999986 899998886 4589999999999993
No 226
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.54 E-value=1.3e-06 Score=93.63 Aligned_cols=66 Identities=27% Similarity=0.427 Sum_probs=49.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCC---CcHHHHHHHhCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPF---RNIFSLVDELGIK 110 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~---~~~~~~~~~lg~~ 110 (533)
...++|+|||||++||++|+.|++.|++|+|+|+.+.+||.+..|...+.... ....++++.+|++
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~ 376 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGID 376 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeE
Confidence 35689999999999999999999999999999999999997655543322111 1123456667765
No 227
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.47 E-value=1.1e-06 Score=86.31 Aligned_cols=84 Identities=18% Similarity=0.142 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHhc-CCEEEcCceeeEEEeccCCc-eEEEEEe----CCeeeecCEEEEccChhhHHHhhhhccccCchhH
Q 009508 252 KIFEPWMDSMRTR-GCEFLDGRRVTDFIYDEERC-CISDVVC----GKETYSAGAVVLAVGISTLQELIKNSILCNREEF 325 (533)
Q Consensus 252 ~l~~~l~~~l~~~-G~~i~~~~~V~~I~~~~~~~-~v~~v~~----~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~ 325 (533)
.|++.|.+.+++. |+++++|++|++|+..+ +| +.+.+.. +..++.|+.|++.+|...+. |+..... +
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~-dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~-LLqksgi---~-- 254 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNG-DGRWEVKVKDLKTGEKREVRAKFVFVGAGGGALP-LLQKSGI---P-- 254 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECC-CCCEEEEEEecCCCCeEEEECCEEEECCchHhHH-HHHHcCC---h--
Confidence 6888899999877 99999999999999987 45 4444432 23489999999999999887 5544321 1
Q ss_pred HhhccCcceeeEEEEEEe
Q 009508 326 LKVLNLASIDVVSVKLWF 343 (533)
Q Consensus 326 ~~~~~l~~~~~~~v~l~~ 343 (533)
..+.+..+|+.-.++..
T Consensus 255 -e~~gyggfPVsG~fl~~ 271 (488)
T PF06039_consen 255 -EGKGYGGFPVSGQFLRC 271 (488)
T ss_pred -hhcccCCCcccceEEec
Confidence 23445555554333433
No 228
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=1e-05 Score=77.31 Aligned_cols=151 Identities=11% Similarity=0.097 Sum_probs=99.4
Q ss_pred hcCCCHHhhhhcchhhHHhhcC--CCCchhhhccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHH
Q 009508 151 FSRLPLVDRLTSLPLMAAVIDF--DNTDVAWRKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGI 228 (533)
Q Consensus 151 ~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 228 (533)
-+.+++.+|..+++++..-..+ ......+..+.+.++.+||+..++++.+-.-++..+ .+.... +.+....+..
T Consensus 187 sk~LTivEKr~LMKFltfc~~y~tEk~~~~~~~~~e~~F~EyL~~~rltp~lqs~vl~aI--aM~~~~--~~tt~eGm~a 262 (547)
T KOG4405|consen 187 SKSLTIVEKRMLMKFLTFCQEYLTEKDPDEYVEFRERPFSEYLKTMRLTPKLQSIVLHAI--AMLSES--QLTTIEGMDA 262 (547)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhhccCcHHHHHhhcCcHHHHHHhcCCChhhHHHHHHHH--HhcCcc--cccHHHHHHH
Confidence 3567778887777766555555 444555677778899999999999887755444443 233222 2333222222
Q ss_pred HHHHH--HhhcCCcceeeecCCcchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCce-EEEEEeCCeeeecCEEEEcc
Q 009508 229 LYFII--LAHQKNFDLVWCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCC-ISDVVCGKETYSAGAVVLAV 305 (533)
Q Consensus 229 ~~~~~--~~~~~~~~~~~~~g~~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~-v~~v~~~~~~~~ad~VV~a~ 305 (533)
...+. .+++++..+.||-.|.+ .|.+.+.+.+.-.|+-..+..+|+.|..+++... ...+...|.++.+.++|++-
T Consensus 263 t~~fl~slGrfgntpfLfPlYGqG-ELpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~~~~~l~s~g~ri~~k~~v~s~ 341 (547)
T KOG4405|consen 263 TKNFLTSLGRFGNTPFLFPLYGQG-ELPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLDCKAILDSFGQRINAKNFVVSP 341 (547)
T ss_pred HHHHHHHhhccCCCcceeeccCCC-cchHHHHHHHHHhcceEEeccchhheeecccccchhhhHhhhcchhcceeeeecC
Confidence 22222 45667777888876655 6889999888888999999999999999862222 12344556788888888873
Q ss_pred C
Q 009508 306 G 306 (533)
Q Consensus 306 ~ 306 (533)
.
T Consensus 342 ~ 342 (547)
T KOG4405|consen 342 S 342 (547)
T ss_pred c
Confidence 3
No 229
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.41 E-value=2.1e-06 Score=88.46 Aligned_cols=64 Identities=23% Similarity=0.372 Sum_probs=49.0
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 316 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~ 316 (533)
.+.+.+.+.+.+++.|++|+++++|++|..+ +.+..+..+++++.+|.||+|+|......++.+
T Consensus 190 ~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~---~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~ 253 (444)
T PRK09564 190 DKEITDVMEEELRENGVELHLNEFVKSLIGE---DKVEGVVTDKGEYEADVVIVATGVKPNTEFLED 253 (444)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEEecC---CcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHh
Confidence 4566777888888999999999999999643 334455666678999999999997755555544
No 230
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.40 E-value=6.5e-06 Score=71.39 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=27.5
Q ss_pred EEECCCHHHHHHHHHHHHC-----CCeEEEEcCCCC
Q 009508 51 VVVGSGWAGLGAAHHLSKQ-----GFDVTVLDDGNG 81 (533)
Q Consensus 51 vVIGaG~aGL~aA~~L~~~-----G~~V~vlE~~~~ 81 (533)
+|||+|++|++++.+|.++ ..+|+|||+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999887 469999999654
No 231
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.40 E-value=1e-05 Score=83.96 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDD 78 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~ 78 (533)
..||++|||||.+|++||..+++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 368999999999999999999999999999998
No 232
>PRK02106 choline dehydrogenase; Validated
Probab=98.40 E-value=5.4e-06 Score=87.83 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=42.7
Q ss_pred hcCCEEEcCceeeEEEeccCCceEEEEEeC--Ce---eeecCEEEEccChhhHHHhhhhc
Q 009508 263 TRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE---TYSAGAVVLAVGISTLQELIKNS 317 (533)
Q Consensus 263 ~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~--~~---~~~ad~VV~a~~~~~~~~ll~~~ 317 (533)
..+.+|++++.|++|..++ +++++|+.. ++ .+.++.||+|+|...+.+||..+
T Consensus 213 ~~nl~i~~~a~V~rI~~~~--~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~S 270 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG--KRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLS 270 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC--CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhc
Confidence 4579999999999999985 677777652 22 46899999999999888887665
No 233
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.39 E-value=1.4e-05 Score=84.39 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccC-CceEEEEEe----CCe--eeecCEEEEccChhh
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEE-RCCISDVVC----GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~-~~~v~~v~~----~~~--~~~ad~VV~a~~~~~ 309 (533)
.+...+...+++.+++|+.+++|+++..+++ +|+++++.. +++ .+.|+.||+|+|.+.
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 4555566666677789999999999998641 167877653 232 578999999999985
No 234
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.38 E-value=8.7e-06 Score=82.47 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhh
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK 315 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~ 315 (533)
.+...+.+.+++.|++|+++++|++|.. + +.+.....+++++.+|.||+++|......+..
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~--~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~ 247 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-G--EKVELTLQSGETLQADVVIYGIGISANDQLAR 247 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc-C--CEEEEEECCCCEEECCEEEECCCCChhhHHHH
Confidence 4455677778889999999999999976 3 33322233456899999999999876554443
No 235
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.38 E-value=0.00011 Score=72.78 Aligned_cols=63 Identities=24% Similarity=0.346 Sum_probs=48.0
Q ss_pred ecCCcchhhHHHHHHHHHh-cCCEEEcCceeeEEEeccCCceEEEEEeC---C--eeeecCEEEEccChh
Q 009508 245 CRGTLREKIFEPWMDSMRT-RGCEFLDGRRVTDFIYDEERCCISDVVCG---K--ETYSAGAVVLAVGIS 308 (533)
Q Consensus 245 ~~g~~~~~l~~~l~~~l~~-~G~~i~~~~~V~~I~~~~~~~~v~~v~~~---~--~~~~ad~VV~a~~~~ 308 (533)
..+.-++.+.+.|.+.+++ .+++|+-++.+.++..++ +..+.++... + ..+.++.||+|+|.-
T Consensus 127 ~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~-~~~~~Gv~~~~~~~~~~~~~a~~vVLATGG~ 195 (518)
T COG0029 127 AADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIED-GIGVAGVLVLNRNGELGTFRAKAVVLATGGL 195 (518)
T ss_pred ecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcC-CceEeEEEEecCCCeEEEEecCeEEEecCCC
Confidence 3455567889999998876 699999999999999987 3244466542 2 478899999998854
No 236
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.37 E-value=3.4e-07 Score=90.30 Aligned_cols=43 Identities=16% Similarity=0.431 Sum_probs=38.6
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 43 ~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
+....+||+|||||..|.-||.-.+-+|.+|.++|+++...|.
T Consensus 63 ~~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGT 105 (680)
T KOG0042|consen 63 KSTHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGT 105 (680)
T ss_pred hcCCcccEEEECCCccCcceeehhhcccceeEEEecccccCCc
Confidence 3445699999999999999999999999999999999988775
No 237
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.36 E-value=2.7e-05 Score=79.55 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=41.7
Q ss_pred cchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhh
Q 009508 249 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 309 (533)
Q Consensus 249 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~ 309 (533)
+.+.+.+.+.+.|+++|++|+++++|++|..+ + + +..+++++.+|.||+|+|...
T Consensus 226 ~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~---~-v--~~~~g~~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 226 FDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK---E-V--VLKDGEVIPTGLVVWSTGVGP 280 (424)
T ss_pred CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC---E-E--EECCCCEEEccEEEEccCCCC
Confidence 34456777788889999999999999998743 2 2 233456899999999988543
No 238
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.35 E-value=6.2e-06 Score=86.88 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=44.7
Q ss_pred HHHHHHH-hcCCEEEcCceeeEEEeccCCceEEEEEeC--Ce---eeecCEEEEccChhhHHHhhhhc
Q 009508 256 PWMDSMR-TRGCEFLDGRRVTDFIYDEERCCISDVVCG--KE---TYSAGAVVLAVGISTLQELIKNS 317 (533)
Q Consensus 256 ~l~~~l~-~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~--~~---~~~ad~VV~a~~~~~~~~ll~~~ 317 (533)
.+...+. +.+++|+.++.|++|..++ +++++|+.. ++ .+.++.||+|+|...+.+||...
T Consensus 198 ~~l~~a~~r~nl~i~~~~~V~rI~~~~--~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~S 263 (532)
T TIGR01810 198 AYLHPAMKRPNLEVQTRAFVTKINFEG--NRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLS 263 (532)
T ss_pred HHhhhhccCCCeEEEeCCEEEEEEecC--CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhc
Confidence 3333333 4579999999999999975 777777652 22 35789999999998777777654
No 239
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=2.3e-05 Score=78.16 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
.|||||||||.||.-||+..++.|.+++|+=-+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 499999999999999999999999999998765
No 240
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.32 E-value=3.7e-06 Score=79.67 Aligned_cols=44 Identities=23% Similarity=0.417 Sum_probs=40.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC-Cccc
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP-DDIS 89 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~-~~~G 89 (533)
..+||+|||+|++|-.||.+.+|.|.+...+|++..+||. ++.|
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvG 82 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVG 82 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeeecc
Confidence 6799999999999999999999999999999999999998 4444
No 241
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.28 E-value=3e-05 Score=86.48 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
..+||+|||||.+||+||..+++.|.+|+|+||...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 457999999999999999999999999999999864
No 242
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.28 E-value=7.8e-06 Score=89.70 Aligned_cols=65 Identities=9% Similarity=0.116 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe-CCeeeecCEEEEccChhhHHHhhhh
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELIKN 316 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~-~~~~~~ad~VV~a~~~~~~~~ll~~ 316 (533)
+.....+.+.++++|++|++++.|++|..++ .+....+.. +++++.+|.||+|+|......|+.+
T Consensus 187 ~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~-~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~~ 252 (847)
T PRK14989 187 QMGGEQLRRKIESMGVRVHTSKNTLEIVQEG-VEARKTMRFADGSELEVDFIVFSTGIRPQDKLATQ 252 (847)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCeEEEEEecC-CCceEEEEECCCCEEEcCEEEECCCcccCchHHhh
Confidence 3455667788899999999999999998653 233333443 4568999999999998766555433
No 243
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.27 E-value=9e-07 Score=88.99 Aligned_cols=41 Identities=34% Similarity=0.587 Sum_probs=38.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
+..++|+|||||+|||++|++|.+.|++|+++||.+.+||.
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGl 44 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL 44 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccce
Confidence 35689999999999999999999999999999999999996
No 244
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.24 E-value=1.4e-06 Score=88.83 Aligned_cols=43 Identities=21% Similarity=0.479 Sum_probs=39.4
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCe-EEEEcCCCCCCCC
Q 009508 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQGFD-VTVLDDGNGFGSP 85 (533)
Q Consensus 43 ~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~-V~vlE~~~~~GG~ 85 (533)
+...++||+|||||++||++|++|.++|.. ++||||++.+||.
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~ 47 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGT 47 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCc
Confidence 345778999999999999999999999998 9999999999983
No 245
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.23 E-value=1.3e-06 Score=85.27 Aligned_cols=41 Identities=32% Similarity=0.583 Sum_probs=38.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
+...+++|||||++|++||..|++.|++|.|+|+++.+||+
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGr 162 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCccccc
Confidence 34578999999999999999999999999999999999998
No 246
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.20 E-value=7.4e-05 Score=74.89 Aligned_cols=54 Identities=22% Similarity=0.250 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTL 310 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~ 310 (533)
+.+...+.+.++++|++++++++|++|.. +.+ +..++.++.+|.||+|+|....
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~~----~~v--~~~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGPD----GAL--ILADGRTLPADAILWATGARAP 244 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEcC----CeE--EeCCCCEEecCEEEEccCCChh
Confidence 34566777788899999999999998852 221 2234568999999999996543
No 247
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.20 E-value=1.7e-06 Score=94.94 Aligned_cols=45 Identities=31% Similarity=0.434 Sum_probs=40.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCccc
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDIS 89 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G 89 (533)
...++|+|||||+|||+||+.|+++|++|+|+|+.+.+||.+..+
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~ 579 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI 579 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec
Confidence 345899999999999999999999999999999999999975443
No 248
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.19 E-value=1.6e-06 Score=89.60 Aligned_cols=44 Identities=20% Similarity=0.430 Sum_probs=39.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC-Cccc
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP-DDIS 89 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~-~~~G 89 (533)
++|||+|||||.+|++||..+++.|++|+|+|+.+.+||. .+.|
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~~~g 46 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVG 46 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeeccCc
Confidence 4589999999999999999999999999999987789997 3444
No 249
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.18 E-value=5.7e-05 Score=78.17 Aligned_cols=38 Identities=37% Similarity=0.615 Sum_probs=34.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
++||+|||||.+|+.+|..+++.|.+|+|+|++ .+||.
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~~gG~ 38 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGADVTVIERD-GLGGA 38 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCCc
Confidence 358999999999999999999999999999987 46775
No 250
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.18 E-value=3.3e-06 Score=86.36 Aligned_cols=46 Identities=26% Similarity=0.231 Sum_probs=40.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHH--CCCeEEEEcCCCCCCCCCcccc
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSK--QGFDVTVLDDGNGFGSPDDISM 90 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~--~G~~V~vlE~~~~~GG~~~~G~ 90 (533)
...++|+|||||++||+||..|++ .|++|+|+|+.+.+||.+..|.
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gv 71 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGV 71 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeecc
Confidence 346789999999999999999987 6999999999999999866553
No 251
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.17 E-value=2e-06 Score=88.42 Aligned_cols=58 Identities=16% Similarity=0.223 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~ 311 (533)
..+...+.+.+++.|++++++++|++|..++ +.+ .+..+++++.+|.||+|+|.....
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~--~~v-~v~~~~g~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHE--NQV-QVHSEHAQLAVDALLIASGRQPAT 256 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEEcCCeEEeCEEEEeecCCcCC
Confidence 4566778888899999999999999998764 433 345555578999999999877544
No 252
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.16 E-value=4.3e-05 Score=80.08 Aligned_cols=38 Identities=42% Similarity=0.491 Sum_probs=34.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
...++|+||||+|.+|.+.|..|++.|++|+|||++..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~~ 41 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGGP 41 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCCC
Confidence 45679999999999999999999988999999999843
No 253
>PRK14694 putative mercuric reductase; Provisional
Probab=98.15 E-value=2.6e-06 Score=88.25 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=47.0
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL 313 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~l 313 (533)
...+...+.+.+++.|++|+++++|++|+.++ +.+ .+.++++++.+|.||+|+|......+
T Consensus 217 ~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~pn~~~ 277 (468)
T PRK14694 217 DPAVGEAIEAAFRREGIEVLKQTQASEVDYNG--REF-ILETNAGTLRAEQLLVATGRTPNTEN 277 (468)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC--CEE-EEEECCCEEEeCEEEEccCCCCCcCC
Confidence 34677778888899999999999999998764 433 34555568999999999997765443
No 254
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.12 E-value=2.4e-06 Score=88.77 Aligned_cols=39 Identities=33% Similarity=0.675 Sum_probs=33.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
+++|+|||||++||++|..|.+.|++|+++|+++.+||.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~ 39 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGL 39 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGG
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCcc
Confidence 368999999999999999999999999999999999998
No 255
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.11 E-value=3e-06 Score=87.84 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=43.7
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCC--eeeecCEEEEccChhhH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGISTL 310 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~--~~~~ad~VV~a~~~~~~ 310 (533)
..+...+.+.+++.|++++++++|++|+.++ +.+.....++ .++.+|.||+|+|....
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~--~~v~v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKND--DQVVYENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC--CEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence 4566777888888999999999999998765 4433222334 37999999999997654
No 256
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.11 E-value=3.2e-06 Score=87.52 Aligned_cols=39 Identities=31% Similarity=0.524 Sum_probs=36.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
.+|||||||||++|++||..|++.|++|+|+|+ +.+||.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~ 40 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGT 40 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Cccccc
Confidence 569999999999999999999999999999999 678885
No 257
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=98.10 E-value=0.00027 Score=69.65 Aligned_cols=116 Identities=22% Similarity=0.203 Sum_probs=75.9
Q ss_pred hccCCccHHHHHHHhCCCHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHhhcCCcceeeecCCcchhhHHHHHH
Q 009508 180 RKYDSITARELFKQFGCSERLYRNVIGPLVQVGLFAPAEQCSAAATLGILYFIILAHQKNFDLVWCRGTLREKIFEPWMD 259 (533)
Q Consensus 180 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~l~~ 259 (533)
......|.++||++.|+++.+.+.++.+..+..++.+ .++.+...+-.+. +...+.+-.+|| ..++++.|.
T Consensus 65 ~~~t~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~-~~i~a~~G~vSla------~a~~gl~sV~GG-N~qI~~~ll- 135 (368)
T PF07156_consen 65 LNLTKVTGEEYLKENGISERFINELVQAATRVNYGQN-VNIHAFAGLVSLA------GATGGLWSVEGG-NWQIFEGLL- 135 (368)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHhheEeecccc-cchhhhhhheeee------eccCCceEecCC-HHHHHHHHH-
Confidence 3456678899999999999999999999999999875 3455432211110 111223334566 457877776
Q ss_pred HHHhcCCEEEcCceeeEE-EeccCCce-EEEEE--eCC--eeeecCEEEEccChh
Q 009508 260 SMRTRGCEFLDGRRVTDF-IYDEERCC-ISDVV--CGK--ETYSAGAVVLAVGIS 308 (533)
Q Consensus 260 ~l~~~G~~i~~~~~V~~I-~~~~~~~~-v~~v~--~~~--~~~~ad~VV~a~~~~ 308 (533)
+..|.++ ++++|++| ...+ ++. ...+. .+. ..-.+|.||+|+|..
T Consensus 136 --~~S~A~v-l~~~Vt~I~~~~~-~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~ 186 (368)
T PF07156_consen 136 --EASGANV-LNTTVTSITRRSS-DGYSLYEVTYKSSSGTESDEYDIVVIATPLQ 186 (368)
T ss_pred --HHccCcE-ecceeEEEEeccC-CCceeEEEEEecCCCCccccCCEEEECCCcc
Confidence 4568899 89999999 3333 232 22232 222 234579999999985
No 258
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.09 E-value=2.2e-05 Score=86.17 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe-CCeeeecCEEEEccChhhHHHhh
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC-GKETYSAGAVVLAVGISTLQELI 314 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~-~~~~~~ad~VV~a~~~~~~~~ll 314 (533)
.+...+.+.++++|++|++++.|++|..++ .+..+.. +++++.+|.||+|+|......+.
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~---~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la 243 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVGAT---KADRIRFKDGSSLEADLIVMAAGIRPNDELA 243 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEcCC---ceEEEEECCCCEEEcCEEEECCCCCcCcHHH
Confidence 445567777889999999999999997543 3334444 45689999999999977544444
No 259
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.08 E-value=4.1e-06 Score=91.62 Aligned_cols=45 Identities=36% Similarity=0.500 Sum_probs=40.6
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCccc
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDIS 89 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G 89 (533)
...++|+|||||++||+||+.|+++|++|+|+|+.+.+||.+..+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~ 581 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNI 581 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeee
Confidence 456899999999999999999999999999999999999975443
No 260
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.06 E-value=6.9e-06 Score=82.77 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=39.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCeEEEEcCCCCCCCCCccccc
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLS-KQGFDVTVLDDGNGFGSPDDISMQ 91 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~-~~G~~V~vlE~~~~~GG~~~~G~~ 91 (533)
..++|+|||||+|||.||.+|. +.|++|+|+|+.+.+||.+..|..
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVa 84 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVA 84 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCC
Confidence 4578999999999999999765 679999999999999998666643
No 261
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.05 E-value=7e-06 Score=84.71 Aligned_cols=65 Identities=26% Similarity=0.420 Sum_probs=48.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCC---CcHHHHHHHhCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPF---RNIFSLVDELGIK 110 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~---~~~~~~~~~lg~~ 110 (533)
+.++|+|||||++||++|+.|++.|++|+|+|+.+.+||.+..|...+.... ....+.++++|++
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~ 207 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIE 207 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCE
Confidence 5579999999999999999999999999999999999997555432221111 1223456667766
No 262
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.01 E-value=0.00014 Score=67.08 Aligned_cols=185 Identities=16% Similarity=0.093 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhhccccCchhHHhhccC
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKNSILCNREEFLKVLNL 331 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~~~~~~~~~~~~~~~l 331 (533)
.+..-|.+++.+.|+++.. .+|++++.-. .-.+|.||.|+|.+.-. |..+.. ..|.
T Consensus 152 ~ylpyl~k~l~e~Gvef~~-r~v~~l~E~~-------------~~~~DVivNCtGL~a~~-L~gDd~--~yPi------- 207 (342)
T KOG3923|consen 152 KYLPYLKKRLTENGVEFVQ-RRVESLEEVA-------------RPEYDVIVNCTGLGAGK-LAGDDD--LYPI------- 207 (342)
T ss_pred hhhHHHHHHHHhcCcEEEE-eeeccHHHhc-------------cCCCcEEEECCcccccc-ccCCcc--eeec-------
Confidence 5677788889999999864 5666665321 13689999999988544 665531 1111
Q ss_pred cceeeEEEEEEeccCCCCCCCCceeeccCCCccceeeeccccccccCCCCCeEEEEEecCCCCCCCCCHHHHHHHHHHHH
Q 009508 332 ASIDVVSVKLWFDKKVTVPNVSNACSGFGDSLAWTFFDLNKIYDEHKDDSATVIQADFYHANELMPLKDDQVVAKAVSYL 411 (533)
Q Consensus 332 ~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ei~~~~~~~l 411 (533)
.-..+..+.++.. +..+- + ... .+. .|...+|+.-.+.-...|...-..+-...|++.-
T Consensus 208 -----RGqVl~V~ApWvk---hf~~~--D-~~~-ty~---------iP~~~~V~lGg~~Q~g~w~~ei~~~D~~dIl~rc 266 (342)
T KOG3923|consen 208 -----RGQVLKVDAPWVK---HFIYR--D-FSR-TYI---------IPGTESVTLGGTKQEGNWNLEITDEDRRDILERC 266 (342)
T ss_pred -----cceEEEeeCCcee---EEEEe--c-CCc-cEE---------ecCCceEEEccccccCcccCcCChhhHHHHHHHH
Confidence 1112233333311 10000 0 000 010 1233444433333234444333445556778888
Q ss_pred hhhhcCCCCCccccceeeeCCCCccccCCCccccC--CCCCCC-CCceEEecccccCCCCCchhhHHHHHHHHHHHHHHH
Q 009508 412 SKCIKDFSTATVMDHKIRRFPKSLTHFFPGSYKYM--MRGFTS-FPNLFMAGDWITTRHGSWSQERSYVTGLEAANRVVD 488 (533)
Q Consensus 412 ~~~~p~~~~~~v~~~~~~r~~~~~~~~~pg~~~~~--p~~~~~-~~~l~~aG~~~~~g~~~~~iegA~~SG~~aA~~Il~ 488 (533)
.++.|.+..++++..++. +.|+...-| +..++. -+++-.+-+|.+.|.+ +.-+.-++..||+.+++
T Consensus 267 ~aL~P~l~~a~ii~E~vG--------lRP~Rk~vRlE~e~~~~~~k~~~VVHnYGHgG~G---~Tl~wGtAlea~~Lv~~ 335 (342)
T KOG3923|consen 267 CALEPSLRHAEIIREWVG--------LRPGRKQVRLEAELRTRGGKRLTVVHNYGHGGNG---FTLGWGTALEAAKLVLD 335 (342)
T ss_pred HHhCcccccceehhhhhc--------ccCCCCceeeeeeeecCCCccceeEeeccCCCCc---eecccchHHHHHHHHHH
Confidence 888999877776665555 445432211 111221 2344446666665443 44455678888888888
Q ss_pred HhCC
Q 009508 489 YLGD 492 (533)
Q Consensus 489 ~~g~ 492 (533)
.++.
T Consensus 336 ~l~~ 339 (342)
T KOG3923|consen 336 ALGA 339 (342)
T ss_pred Hhhh
Confidence 7663
No 263
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.00 E-value=7.5e-06 Score=84.81 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=36.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC-Cccc
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP-DDIS 89 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~-~~~G 89 (533)
+|||+|||||++|++||..|++.|++|+|+|++ .+||. .+.|
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~~g 46 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLNVG 46 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceecCC
Confidence 589999999999999999999999999999986 56665 4444
No 264
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.99 E-value=8.8e-06 Score=84.23 Aligned_cols=45 Identities=40% Similarity=0.592 Sum_probs=40.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCccc
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDIS 89 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G 89 (533)
...++|+|||||++||++|..|+++|++|+|+|+.+.+||.+..|
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~g 185 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYG 185 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeec
Confidence 445799999999999999999999999999999999999875444
No 265
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.99 E-value=7.8e-06 Score=81.09 Aligned_cols=36 Identities=33% Similarity=0.423 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
+.||+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 469999999999999999999999999999987654
No 266
>PRK14727 putative mercuric reductase; Provisional
Probab=97.98 E-value=9.6e-06 Score=84.21 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=46.4
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL 313 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~l 313 (533)
...+...+.+.+++.|++|+++++|++|..++ +.+ .+..+++++.+|.||+|+|......+
T Consensus 227 d~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~--~~~-~v~~~~g~i~aD~VlvA~G~~pn~~~ 287 (479)
T PRK14727 227 DPLLGETLTACFEKEGIEVLNNTQASLVEHDD--NGF-VLTTGHGELRAEKLLISTGRHANTHD 287 (479)
T ss_pred hHHHHHHHHHHHHhCCCEEEcCcEEEEEEEeC--CEE-EEEEcCCeEEeCEEEEccCCCCCccC
Confidence 34566777888889999999999999998765 332 34455567999999999998765443
No 267
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.97 E-value=5.3e-05 Score=76.26 Aligned_cols=43 Identities=21% Similarity=0.174 Sum_probs=34.6
Q ss_pred HhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhh
Q 009508 262 RTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 309 (533)
Q Consensus 262 ~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~ 309 (533)
++.|++++++++|++|+.+. . .+.++++++.+|+||+|+|...
T Consensus 69 ~~~gv~~~~~~~V~~id~~~--~---~v~~~~~~~~yd~LVlATG~~~ 111 (377)
T PRK04965 69 EQFNLRLFPHTWVTDIDAEA--Q---VVKSQGNQWQYDKLVLATGASA 111 (377)
T ss_pred HhCCCEEECCCEEEEEECCC--C---EEEECCeEEeCCEEEECCCCCC
Confidence 56799999999999998764 3 2345677899999999999753
No 268
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.97 E-value=9.7e-06 Score=87.70 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=35.0
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
+.+.++|+|||||+|||+||++|++.|++|+|+|+.+..
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~ 418 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKIT 418 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccccc
Confidence 346789999999999999999999999999999987543
No 269
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.95 E-value=1.4e-05 Score=85.88 Aligned_cols=46 Identities=37% Similarity=0.541 Sum_probs=41.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccc
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISM 90 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~ 90 (533)
...++|+|||||++||++|+.|++.|++|+|+|+++.+||.+..|.
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gi 236 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGI 236 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecC
Confidence 3557999999999999999999999999999999999999755543
No 270
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.95 E-value=1.3e-05 Score=81.19 Aligned_cols=66 Identities=33% Similarity=0.465 Sum_probs=51.9
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccccccccCCC---cHHHHHHHhCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISMQGFWYPFR---NIFSLVDELGIK 110 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~---~~~~~~~~lg~~ 110 (533)
...++|+|||||++||++|..|+++|++|+|+|+.+..||++..|.-.+.-... ...+++++.|++
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~ 189 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVE 189 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeE
Confidence 344899999999999999999999999999999999999998777555543322 234555666644
No 271
>PRK10262 thioredoxin reductase; Provisional
Probab=97.93 E-value=1.2e-05 Score=78.96 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=36.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
....+||+|||||++||+||..|+++|++|+++|+. ..||.
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~ 43 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQ 43 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCc
Confidence 346789999999999999999999999999999965 67776
No 272
>PRK13748 putative mercuric reductase; Provisional
Probab=97.91 E-value=1.2e-05 Score=85.64 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=46.0
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHH
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQE 312 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ 312 (533)
...+...+.+.+++.|++|+++++|++|..++ +.+ .+.++++++.+|.||+|+|......
T Consensus 309 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~--~~~-~v~~~~~~i~~D~vi~a~G~~pn~~ 368 (561)
T PRK13748 309 DPAIGEAVTAAFRAEGIEVLEHTQASQVAHVD--GEF-VLTTGHGELRADKLLVATGRAPNTR 368 (561)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--CEE-EEEecCCeEEeCEEEEccCCCcCCC
Confidence 34566778888889999999999999998764 433 3455555799999999999765443
No 273
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.90 E-value=2.1e-05 Score=83.65 Aligned_cols=44 Identities=18% Similarity=0.437 Sum_probs=38.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC-CCCCCC-Cccc
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG-NGFGSP-DDIS 89 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~-~~~GG~-~~~G 89 (533)
.+|||||||+|.+|..||..+++.|.+|+|+|++ +.+||. ++.|
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn~G 160 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVNVG 160 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeEeC
Confidence 3689999999999999999999999999999974 367886 4444
No 274
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.86 E-value=0.00018 Score=72.37 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=40.2
Q ss_pred HHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhh
Q 009508 257 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELI 314 (533)
Q Consensus 257 l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll 314 (533)
+.+.+++.|++++++++|++|..++ +.+.....++.++.+|.||+|+|......+.
T Consensus 189 l~~~l~~~gV~i~~~~~v~~i~~~~--~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~ 244 (377)
T PRK04965 189 LQHRLTEMGVHLLLKSQLQGLEKTD--SGIRATLDSGRSIEVDAVIAAAGLRPNTALA 244 (377)
T ss_pred HHHHHHhCCCEEEECCeEEEEEccC--CEEEEEEcCCcEEECCEEEECcCCCcchHHH
Confidence 3445677899999999999998764 3332222345689999999999976544444
No 275
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.84 E-value=2.1e-05 Score=81.35 Aligned_cols=61 Identities=11% Similarity=0.203 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEE-eCCeeeecCEEEEccChhhHHH
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVV-CGKETYSAGAVVLAVGISTLQE 312 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~-~~~~~~~ad~VV~a~~~~~~~~ 312 (533)
...+.+.+.+.+++.|++|++++.|++|..++ ++.. .+. .+++++.+|.||+|+|......
T Consensus 230 d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~-~~~~-~v~~~~g~~i~~D~vl~a~G~~Pn~~ 291 (486)
T TIGR01423 230 DSTLRKELTKQLRANGINIMTNENPAKVTLNA-DGSK-HVTFESGKTLDVDVVMMAIGRVPRTQ 291 (486)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcC-CceE-EEEEcCCCEEEcCEEEEeeCCCcCcc
Confidence 45677788888999999999999999998764 2322 233 3456899999999999665443
No 276
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.80 E-value=2.2e-05 Score=81.74 Aligned_cols=63 Identities=17% Similarity=0.119 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELI 314 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll 314 (533)
...+.+.+.+.+++.|+++++++.|++|...+ +.+.....+++++.+|.||+|+|......++
T Consensus 221 d~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~--~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l 283 (499)
T PTZ00052 221 DRQCSEKVVEYMKEQGTLFLEGVVPINIEKMD--DKIKVLFSDGTTELFDTVLYATGRKPDIKGL 283 (499)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC--CeEEEEECCCCEEEcCEEEEeeCCCCCcccc
Confidence 34566778888889999999999999998754 3322222345678999999999977654443
No 277
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.80 E-value=2.3e-05 Score=78.26 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=33.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG 83 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G 83 (533)
.||+|||||++|+.+|+.|++.|++|+|+|+.+..+
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL 36 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence 389999999999999999999999999999887653
No 278
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.79 E-value=3e-05 Score=80.38 Aligned_cols=44 Identities=41% Similarity=0.536 Sum_probs=40.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCccc
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDIS 89 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G 89 (533)
..++|+|||||++|+++|..|+++|++|+|+|+.+++||.+..|
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~g 185 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYG 185 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeecc
Confidence 45799999999999999999999999999999999999875554
No 279
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.77 E-value=2.5e-05 Score=87.82 Aligned_cols=40 Identities=33% Similarity=0.447 Sum_probs=38.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD 86 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 86 (533)
.+||+|||||++||+||..|++.|++|+|+|+++.+||.+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~ 202 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSL 202 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCee
Confidence 5799999999999999999999999999999999999973
No 280
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.77 E-value=5e-05 Score=57.48 Aligned_cols=35 Identities=29% Similarity=0.613 Sum_probs=32.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG 83 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G 83 (533)
+|+|||||+.|+-.|..|++.|.+|+|+++++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58999999999999999999999999999997753
No 281
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.76 E-value=4.2e-05 Score=71.79 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=46.4
Q ss_pred cchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhh
Q 009508 249 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGIST 309 (533)
Q Consensus 249 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~ 309 (533)
+.+.+.+.+.+.++..|++++.++.++++...+ +|....+++.+.....|.+++|+|-..
T Consensus 228 FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~-~g~~~~i~~~~~i~~vd~llwAiGR~P 287 (478)
T KOG0405|consen 228 FDEMISDLVTEHLEGRGINVHKNSSVTKVIKTD-DGLELVITSHGTIEDVDTLLWAIGRKP 287 (478)
T ss_pred hhHHHHHHHHHHhhhcceeecccccceeeeecC-CCceEEEEeccccccccEEEEEecCCC
Confidence 345566777888888999999999999999876 465555666664455999999999663
No 282
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.75 E-value=5.3e-05 Score=75.42 Aligned_cols=41 Identities=37% Similarity=0.471 Sum_probs=37.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPD 86 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~ 86 (533)
..++|+|||+|++|+.+|..|++.|++|+|+|+.+.+||.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~ 57 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLM 57 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcee
Confidence 45799999999999999999999999999999999999864
No 283
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.75 E-value=3.7e-05 Score=69.87 Aligned_cols=32 Identities=34% Similarity=0.642 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
||+|||||++|++||..|++.|.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998774
No 284
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.70 E-value=0.00046 Score=71.53 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
..+|+|||+|.+|+-.|..|++.|.+|+++|+.++
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 206 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPR 206 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 36899999999999999999999999999998744
No 285
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.70 E-value=0.00052 Score=71.17 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=32.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 205 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI 205 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence 468999999999999999999999999999988643
No 286
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.69 E-value=5.9e-05 Score=80.00 Aligned_cols=45 Identities=36% Similarity=0.584 Sum_probs=40.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCccc
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDIS 89 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G 89 (533)
...++|+|||||++||++|+.|++.|++|+|+|+.+.+||.+..|
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~g 179 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYG 179 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeec
Confidence 455799999999999999999999999999999999999965444
No 287
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=97.65 E-value=5.5e-05 Score=80.78 Aligned_cols=49 Identities=33% Similarity=0.470 Sum_probs=42.7
Q ss_pred CCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCcccc
Q 009508 42 NNGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDISM 90 (533)
Q Consensus 42 ~~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G~ 90 (533)
+.....++|.|||+|.+||.||-.|.+.|+.|+|+||.+++||.+..|.
T Consensus 1780 p~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygi 1828 (2142)
T KOG0399|consen 1780 PAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGI 1828 (2142)
T ss_pred cccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecC
Confidence 3334458999999999999999999999999999999999999765653
No 288
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.65 E-value=6.2e-05 Score=77.80 Aligned_cols=57 Identities=14% Similarity=0.128 Sum_probs=43.2
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCC--eeeecCEEEEccChhhH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK--ETYSAGAVVLAVGISTL 310 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~--~~~~ad~VV~a~~~~~~ 310 (533)
..+.+.+.+.+++.|++|+++++|++|+.++ ..+ .+..++ .++.+|.||+|+|....
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~--~~v-~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYK--KQA-LFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcC--CEE-EEEECCceEEEEeCEEEEecCCccC
Confidence 4566778888888999999999999998654 333 234444 36899999999996543
No 289
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.63 E-value=6.4e-05 Score=78.37 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=38.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
...++||||||||.|||.||..++++|.+|+|+||....+|+
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~ 44 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH 44 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence 356789999999999999999999999999999999888775
No 290
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.63 E-value=7.9e-05 Score=70.93 Aligned_cols=45 Identities=24% Similarity=0.255 Sum_probs=39.1
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCCCCCCccc
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQ--GFDVTVLDDGNGFGSPDDIS 89 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~--G~~V~vlE~~~~~GG~~~~G 89 (533)
..+++|+|||+|+||+.+|++|.++ +.+|.|+|+.+.++|-+..|
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG 64 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG 64 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence 3556999999999999999999885 68999999999999975554
No 291
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.62 E-value=0.00074 Score=70.15 Aligned_cols=35 Identities=37% Similarity=0.575 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
..+|+|||||.+|+-+|..|++.|.+|+|+|+.++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~ 214 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADR 214 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCc
Confidence 46899999999999999999999999999998743
No 292
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.61 E-value=0.00061 Score=69.88 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=40.7
Q ss_pred HHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhh
Q 009508 257 WMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 316 (533)
Q Consensus 257 l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~ 316 (533)
+.+.+++.|++++++++|++|..++ . + .+..+++++.+|.||+|+|......++.+
T Consensus 185 ~~~~l~~~gV~v~~~~~v~~i~~~~--~-~-v~~~~g~~i~~D~vi~a~G~~p~~~~l~~ 240 (427)
T TIGR03385 185 VEEELKKHEINLRLNEEVDSIEGEE--R-V-KVFTSGGVYQADMVILATGIKPNSELAKD 240 (427)
T ss_pred HHHHHHHcCCEEEeCCEEEEEecCC--C-E-EEEcCCCEEEeCEEEECCCccCCHHHHHh
Confidence 3445567899999999999998653 3 2 23345668999999999998765555543
No 293
>PRK13984 putative oxidoreductase; Provisional
Probab=97.59 E-value=9.3e-05 Score=79.31 Aligned_cols=46 Identities=39% Similarity=0.513 Sum_probs=40.5
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCccc
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSPDDIS 89 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~~G 89 (533)
..+.++|+|||+|.+|+++|..|+++|++|+|+|+.+.+||....|
T Consensus 280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~ 325 (604)
T PRK13984 280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYG 325 (604)
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeec
Confidence 3456789999999999999999999999999999999999864433
No 294
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.58 E-value=0.00085 Score=66.01 Aligned_cols=36 Identities=22% Similarity=0.325 Sum_probs=27.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDGNGF 82 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G-~~V~vlE~~~~~ 82 (533)
.+|+|+||.|+++|+.|..|.+.+ .+++.||+.+.+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 479999999999999999999885 899999998654
No 295
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.54 E-value=9.7e-05 Score=76.59 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=44.0
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCC---eeeecCEEEEccChhhHHH
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGK---ETYSAGAVVLAVGISTLQE 312 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~---~~~~ad~VV~a~~~~~~~~ 312 (533)
...+.+.+.+.|++.|++|++++.+++|...+ +.+.....++ +++.+|.||+|+|......
T Consensus 219 d~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~--~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~ 282 (484)
T TIGR01438 219 DQDCANKVGEHMEEHGVKFKRQFVPIKVEQIE--AKVKVTFTDSTNGIEEEYDTVLLAIGRDACTR 282 (484)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCceEEEEEEcC--CeEEEEEecCCcceEEEeCEEEEEecCCcCCC
Confidence 44567778888899999999999999998764 3322112222 3799999999999664443
No 296
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.54 E-value=0.016 Score=60.97 Aligned_cols=59 Identities=19% Similarity=0.196 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CC--eeeecCEEEEccChhhHH
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GK--ETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~--~~~~ad~VV~a~~~~~~~ 311 (533)
.+++..+++.+.++|++|+.+++|++|..++ +.+++++. ++ .++.|+.||+|+|+|...
T Consensus 128 ~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~ 192 (516)
T TIGR03377 128 FRLVAANVLDAQEHGARIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGR 192 (516)
T ss_pred HHHHHHHHHHHHHcCCEEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHH
Confidence 4677888888899999999999999999875 65555543 23 379999999999999654
No 297
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.50 E-value=0.0013 Score=68.10 Aligned_cols=35 Identities=31% Similarity=0.448 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
..+|+|||+|..|+-.|..|++.|.+|+|+|+.++
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~ 208 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR 208 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 47899999999999999999999999999998643
No 298
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.49 E-value=0.00011 Score=80.58 Aligned_cols=34 Identities=32% Similarity=0.399 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQ--GFDVTVLDDGNG 81 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~--G~~V~vlE~~~~ 81 (533)
++|+|||||++||++|+.|+++ |++|+|+|+++.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 4899999999999999999998 899999999865
No 299
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.49 E-value=0.0015 Score=67.66 Aligned_cols=35 Identities=34% Similarity=0.459 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~ 206 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR 206 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 46899999999999999999999999999997643
No 300
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.48 E-value=0.0014 Score=67.86 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
..+++|||+|..|+-.|..|++.|.+|+++|+.++
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 211 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR 211 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 35899999999999999999999999999998744
No 301
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.43 E-value=0.0018 Score=66.92 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
..+++|||+|.+|+-+|..|++.|.+|+|+|+.+++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l 205 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL 205 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 468999999999999999999999999999987653
No 302
>PRK14694 putative mercuric reductase; Provisional
Probab=97.43 E-value=0.0021 Score=66.73 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 468999999999999999999999999999864
No 303
>PRK07846 mycothione reductase; Reviewed
Probab=97.42 E-value=0.0022 Score=66.13 Aligned_cols=35 Identities=31% Similarity=0.513 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
..+|+|||||..|+-.|..|++.|.+|+|+|++++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ 200 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGR 200 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence 46899999999999999999999999999998743
No 304
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.42 E-value=0.0018 Score=66.62 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
..+|+|||+|..|+-.|..|++.|.+|+|+|+++++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 193 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLF 193 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 458999999999999999999999999999987543
No 305
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.41 E-value=0.0021 Score=66.87 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~ 217 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA 217 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 46899999999999999999999999999998743
No 306
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.39 E-value=0.002 Score=66.43 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
..+++|||+|.+|+-.|..|++.|.+|+|+|+.+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 199 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE 199 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 4689999999999999999999999999999764
No 307
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00085 Score=59.26 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhh
Q 009508 251 EKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIK 315 (533)
Q Consensus 251 ~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~ 315 (533)
..|++.|.+..++.|.+|...+ |.+++... ... .+.++.+.+.+|.||+|+|+..-+-.++
T Consensus 70 ~~l~d~mrkqs~r~Gt~i~tEt-Vskv~~ss--kpF-~l~td~~~v~~~avI~atGAsAkRl~~p 130 (322)
T KOG0404|consen 70 PELMDKMRKQSERFGTEIITET-VSKVDLSS--KPF-KLWTDARPVTADAVILATGASAKRLHLP 130 (322)
T ss_pred HHHHHHHHHHHHhhcceeeeee-hhhccccC--CCe-EEEecCCceeeeeEEEecccceeeeecC
Confidence 3566667777788899998764 99998875 333 3455667899999999999775443333
No 308
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=97.37 E-value=0.0021 Score=63.60 Aligned_cols=61 Identities=20% Similarity=0.318 Sum_probs=45.8
Q ss_pred eecCCcchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC--CeeeecCEEEEccChhh
Q 009508 244 WCRGTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG--KETYSAGAVVLAVGIST 309 (533)
Q Consensus 244 ~~~g~~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~--~~~~~ad~VV~a~~~~~ 309 (533)
||.......+++.|.+.++++|++|+++++|++| ++ +. ..+.+. ++.++||.||+|+|...
T Consensus 79 fP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~-~~v~~~~~~~~~~a~~vIlAtGG~s 141 (376)
T TIGR03862 79 FPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GT-LRFETPDGQSTIEADAVVLALGGAS 141 (376)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--Cc-EEEEECCCceEEecCEEEEcCCCcc
Confidence 4443334578899999999999999999999999 32 22 234442 34799999999999754
No 309
>PRK14727 putative mercuric reductase; Provisional
Probab=97.35 E-value=0.0027 Score=66.07 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..+|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 368999999999999999999999999999864
No 310
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.34 E-value=0.0026 Score=65.94 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHH---CCCeEEEEcCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSK---QGFDVTVLDDGNGF 82 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~---~G~~V~vlE~~~~~ 82 (533)
..+|+|||||..|+-.|..++. .|.+|+|+|+.+++
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 4689999999999999976654 49999999988654
No 311
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.33 E-value=0.0018 Score=66.57 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~ 182 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDK 182 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence 36899999999999999999999999999998743
No 312
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00051 Score=64.65 Aligned_cols=41 Identities=32% Similarity=0.521 Sum_probs=34.8
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 43 ~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
..+..|||.|||+|++|.+||.+-+++|.+.-|+- .++||.
T Consensus 207 ~~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQ 247 (520)
T COG3634 207 NAKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQ 247 (520)
T ss_pred hccCCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCe
Confidence 34567999999999999999999999999987765 467773
No 313
>PRK13748 putative mercuric reductase; Provisional
Probab=97.27 E-value=0.0033 Score=67.00 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..+|+|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 468999999999999999999999999999975
No 314
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.23 E-value=0.00014 Score=63.37 Aligned_cols=38 Identities=32% Similarity=0.573 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQ--GFDVTVLDDGNGFGS 84 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~--G~~V~vlE~~~~~GG 84 (533)
..||||||||-+||++||.++++ ..+|.|+|.+-.+||
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG 115 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG 115 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCC
Confidence 35999999999999999999966 689999999877776
No 315
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.19 E-value=0.00042 Score=71.18 Aligned_cols=61 Identities=10% Similarity=0.149 Sum_probs=44.6
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhhhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELIKN 316 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll~~ 316 (533)
.+.+...+.+.+++.|++++++++|++|+. ..+ ...+++++.+|.||+|+|......++.+
T Consensus 188 d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~----~~v--~~~~g~~~~~D~vl~a~G~~pn~~~l~~ 248 (438)
T PRK13512 188 DADMNQPILDELDKREIPYRLNEEIDAING----NEV--TFKSGKVEHYDMIIEGVGTHPNSKFIES 248 (438)
T ss_pred CHHHHHHHHHHHHhcCCEEEECCeEEEEeC----CEE--EECCCCEEEeCEEEECcCCCcChHHHHh
Confidence 345667788888999999999999999963 221 1234557899999999997765545443
No 316
>PRK07846 mycothione reductase; Reviewed
Probab=97.18 E-value=0.00043 Score=71.24 Aligned_cols=60 Identities=18% Similarity=0.235 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHhh
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQELI 314 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~ll 314 (533)
.+.+.+.+ +.+.|++++++++|++++.++ +.+.....+++++.+|.||+|+|......++
T Consensus 208 ~~~~~l~~-l~~~~v~i~~~~~v~~i~~~~--~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l 267 (451)
T PRK07846 208 DISERFTE-LASKRWDVRLGRNVVGVSQDG--SGVTLRLDDGSTVEADVLLVATGRVPNGDLL 267 (451)
T ss_pred HHHHHHHH-HHhcCeEEEeCCEEEEEEEcC--CEEEEEECCCcEeecCEEEEEECCccCcccc
Confidence 44444443 335689999999999998664 3332222345689999999999977555443
No 317
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.17 E-value=0.0059 Score=62.98 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
..+++|||+|..|+-.|..|++.|.+|+|+|+.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 4689999999999999999999999999999764
No 318
>PLN02785 Protein HOTHEAD
Probab=97.16 E-value=0.00056 Score=72.31 Aligned_cols=35 Identities=37% Similarity=0.549 Sum_probs=32.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
...||+||||||.+|+..|..|++ +.+|+|||++.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 456999999999999999999999 69999999985
No 319
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.15 E-value=0.0056 Score=63.93 Aligned_cols=33 Identities=39% Similarity=0.607 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..+++|||+|..|+-.|..|++.|.+|+|+++.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 358999999999999999999999999999864
No 320
>PRK10262 thioredoxin reductase; Provisional
Probab=97.15 E-value=0.0031 Score=61.90 Aligned_cols=33 Identities=24% Similarity=0.384 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..+|+|||+|..|+-.|..|++.|.+|+++++.
T Consensus 146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~ 178 (321)
T PRK10262 146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRR 178 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEEC
Confidence 468999999999999999999999999999976
No 321
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.12 E-value=0.00037 Score=64.74 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCC--ceEEEEEeC-CeeeecCEEEEccChhhHH
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEER--CCISDVVCG-KETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~--~~v~~v~~~-~~~~~ad~VV~a~~~~~~~ 311 (533)
.++..+.+.++..|++|.+|-+|.+|....+. +.-+.|..+ ++++++..||-|++...-+
T Consensus 197 ~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr 259 (453)
T KOG2665|consen 197 SVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDR 259 (453)
T ss_pred HHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhH
Confidence 45667888889999999999999999876521 111223333 4588999999999987543
No 322
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.11 E-value=0.0064 Score=63.19 Aligned_cols=33 Identities=36% Similarity=0.522 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..+++|||||..|+-.|..|++.|.+|+|+++.
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 357999999999999999999999999999864
No 323
>PLN02546 glutathione reductase
Probab=97.11 E-value=0.006 Score=64.22 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
..+|+|||||..|+-.|..|++.|.+|+|+|+.++
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~ 286 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKK 286 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccc
Confidence 46899999999999999999999999999997643
No 324
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.11 E-value=0.0058 Score=63.38 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=32.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
..+|+|||+|..|+-.|..|++.|.+|+|+|+.++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~ 208 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ 208 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 36899999999999999999999999999998754
No 325
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.96 E-value=0.00098 Score=68.70 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeCCeeeecCEEEEccChhhHHHh
Q 009508 252 KIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCGKETYSAGAVVLAVGISTLQEL 313 (533)
Q Consensus 252 ~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~~~~~~ad~VV~a~~~~~~~~l 313 (533)
.+...+.+ +.+.|++++++++|++++.++ +.+.....+++++.+|.|++|+|......+
T Consensus 211 ~~~~~l~~-~~~~gI~i~~~~~V~~i~~~~--~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~ 269 (452)
T TIGR03452 211 DISDRFTE-IAKKKWDIRLGRNVTAVEQDG--DGVTLTLDDGSTVTADVLLVATGRVPNGDL 269 (452)
T ss_pred HHHHHHHH-HHhcCCEEEeCCEEEEEEEcC--CeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence 44444444 334689999999999998765 333222234458999999999996654443
No 326
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.00095 Score=62.50 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
+...|.|||||++|.-|||.|+++|++|.|+|-++.
T Consensus 2 ~~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 2 MQQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CCCceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 346799999999999999999999999999998754
No 327
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.87 E-value=0.0071 Score=59.97 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC-CeeeecCEEEEccChhhHHHhhh
Q 009508 255 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQELIK 315 (533)
Q Consensus 255 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~-~~~~~ad~VV~a~~~~~~~~ll~ 315 (533)
+.+.+.+++.|+++++++.+.++..+. +|.+..|... +.++.||.||+.+|...+..++.
T Consensus 259 ~~~~~y~e~kgVk~~~~t~~s~l~~~~-~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 259 QFYEDYYENKGVKFYLGTVVSSLEGNS-DGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred HHHHHHHHhcCeEEEEecceeecccCC-CCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence 345666788999999999999999886 5777666654 56899999999999887766654
No 328
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.68 E-value=0.002 Score=65.62 Aligned_cols=38 Identities=39% Similarity=0.624 Sum_probs=36.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGS 84 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG 84 (533)
..+++|||+|..||.+|..|+++|++|+++|+.++++|
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~ 173 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccch
Confidence 57999999999999999999999999999999999887
No 329
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.64 E-value=0.0028 Score=61.41 Aligned_cols=40 Identities=33% Similarity=0.485 Sum_probs=34.1
Q ss_pred cCCCCCCCCcEEEECCCHHHHHHHHHHHHC----CCeEEEEcCC
Q 009508 40 TNNNGKNKKKIVVVGSGWAGLGAAHHLSKQ----GFDVTVLDDG 79 (533)
Q Consensus 40 ~~~~~~~~~dVvVIGaG~aGL~aA~~L~~~----G~~V~vlE~~ 79 (533)
.+..+..++||+|||||++|++-|..|... .++|+|+|..
T Consensus 29 ~~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 29 AKSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 344555689999999999999999999865 4799999998
No 330
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=96.57 E-value=0.073 Score=52.22 Aligned_cols=40 Identities=43% Similarity=0.753 Sum_probs=35.0
Q ss_pred CCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 43 NGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 43 ~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
....+++|||+|+|.+|.+....|-..-++|+|+..++++
T Consensus 51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyF 90 (491)
T KOG2495|consen 51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYF 90 (491)
T ss_pred CCCCCceEEEEcCchHHHHHHHhccccccceEEeccccce
Confidence 4456789999999999999999999989999999988763
No 331
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.51 E-value=0.0034 Score=62.57 Aligned_cols=38 Identities=26% Similarity=0.501 Sum_probs=32.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC---CeEEEEcCCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQG---FDVTVLDDGNGFGS 84 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G---~~V~vlE~~~~~GG 84 (533)
+++|+|||+|++|+..|.+|.+.- ..|.|+|..+..|+
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~ 41 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQ 41 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCC
Confidence 479999999999999999998861 23999999988876
No 332
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0037 Score=58.87 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=46.7
Q ss_pred CCcchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEE-E-e-C--CeeeecCEEEEccChhhHH
Q 009508 247 GTLREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDV-V-C-G--KETYSAGAVVLAVGISTLQ 311 (533)
Q Consensus 247 g~~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v-~-~-~--~~~~~ad~VV~a~~~~~~~ 311 (533)
-|+.+.+.+.+.+++++.|+++.-.+-.++|+..+ +++.... . + . ..+-.+|.|++|+|-....
T Consensus 234 rGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~-~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~ 302 (503)
T KOG4716|consen 234 RGFDQDMAELVAEHMEERGIKFLRKTVPERVEQID-DGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALT 302 (503)
T ss_pred ccccHHHHHHHHHHHHHhCCceeecccceeeeecc-CCcEEEEeecccccccccchhhhhhhhhccccch
Confidence 45567888889999999999999888888888876 4542211 1 1 1 2256789999999977554
No 333
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.31 E-value=0.005 Score=63.56 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=35.6
Q ss_pred CCCCCCCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEcCCCC
Q 009508 41 NNNGKNKKKIVVVGSGWAGLGAAHHLSKQ-GFDVTVLDDGNG 81 (533)
Q Consensus 41 ~~~~~~~~dVvVIGaG~aGL~aA~~L~~~-G~~V~vlE~~~~ 81 (533)
..+....||.||||||-||...|..|++. ..+|+|||++..
T Consensus 51 ~~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~ 92 (623)
T KOG1238|consen 51 GSELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGD 92 (623)
T ss_pred ccccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCC
Confidence 34456789999999999999999999997 689999998754
No 334
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.28 E-value=0.089 Score=51.86 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=27.6
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCC--eEEEEcCCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGF--DVTVLDDGN 80 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~--~V~vlE~~~ 80 (533)
....++|+|||||.++.-.+..|.+++. +|+++=++.
T Consensus 187 ~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~ 225 (341)
T PF13434_consen 187 SLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSP 225 (341)
T ss_dssp ----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSS
T ss_pred ccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCC
Confidence 4566899999999999999999998864 888888763
No 335
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=96.18 E-value=0.0057 Score=54.42 Aligned_cols=33 Identities=36% Similarity=0.553 Sum_probs=26.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
|+|.|||.|..||..|..|+++|++|+.+|.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 589999999999999999999999999999874
No 336
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.07 E-value=0.036 Score=58.14 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=43.2
Q ss_pred HHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEeC-CeeeecCEEEEccChhhHHHh
Q 009508 255 EPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVCG-KETYSAGAVVLAVGISTLQEL 313 (533)
Q Consensus 255 ~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~-~~~~~ad~VV~a~~~~~~~~l 313 (533)
..|.+.++++|.++++++.++.|..+ +++.+++.. +..+.||.||+|+|......+
T Consensus 191 ~lL~~~le~~Gi~~~l~~~t~ei~g~---~~~~~vr~~DG~~i~ad~VV~a~GIrPn~el 247 (793)
T COG1251 191 RLLRRKLEDLGIKVLLEKNTEEIVGE---DKVEGVRFADGTEIPADLVVMAVGIRPNDEL 247 (793)
T ss_pred HHHHHHHHhhcceeecccchhhhhcC---cceeeEeecCCCcccceeEEEecccccccHh
Confidence 34666778999999999998888864 556677755 458999999999987754433
No 337
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.01 E-value=0.0098 Score=51.51 Aligned_cols=31 Identities=35% Similarity=0.513 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
+|+|||||-.|.+.|..|+++|++|.|+.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 5899999999999999999999999999987
No 338
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.81 E-value=0.012 Score=59.55 Aligned_cols=38 Identities=26% Similarity=0.404 Sum_probs=34.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGS 84 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG 84 (533)
..+|+|||+|..|+-+|..|++.|.+|+|+|+.+++.+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~ 181 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMG 181 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchh
Confidence 46899999999999999999999999999999887654
No 339
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.78 E-value=0.014 Score=56.90 Aligned_cols=36 Identities=28% Similarity=0.398 Sum_probs=32.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
+++.++|+|||+|..|...|..|+++|++|+++.++
T Consensus 2 ~~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 2 DSETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CCcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 355678999999999999999999999999999876
No 340
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.77 E-value=0.015 Score=51.59 Aligned_cols=32 Identities=34% Similarity=0.672 Sum_probs=28.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
+|.|||+|..|...|..++..|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 58999999999999999999999999999873
No 341
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.65 E-value=0.015 Score=60.56 Aligned_cols=34 Identities=44% Similarity=0.661 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.++|+|||+|.+|+.+|..|+++|++|+++|+.+
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4589999999999999999999999999999764
No 342
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=95.48 E-value=0.021 Score=58.69 Aligned_cols=38 Identities=32% Similarity=0.410 Sum_probs=34.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGS 84 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG 84 (533)
..+|+|||+|.+|+.+|..|++.|.+|+|+|+.+++.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 194 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP 194 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC
Confidence 46899999999999999999999999999999887644
No 343
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.42 E-value=0.024 Score=48.64 Aligned_cols=30 Identities=33% Similarity=0.553 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 50 IVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 50 VvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
|+|||+|..|+..|+.|++.|++|+++.+.
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999999999987
No 344
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.016 Score=57.34 Aligned_cols=36 Identities=28% Similarity=0.426 Sum_probs=32.8
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
+..+|||||||||-||.-||..-++-|.+.+++-.+
T Consensus 25 ~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 25 STSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 367899999999999999999999999999998876
No 345
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.27 E-value=0.15 Score=50.00 Aligned_cols=38 Identities=18% Similarity=0.257 Sum_probs=33.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDGNGF 82 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G-~~V~vlE~~~~~ 82 (533)
+..+|+|.||-|+.-|+.|+.|.+.+ ++++.||+.+.+
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 45689999999999999999999874 889999998653
No 346
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.18 E-value=0.028 Score=53.99 Aligned_cols=33 Identities=33% Similarity=0.578 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.+|.|||+|..|...|..|++.|++|+++|.++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 489999999999999999999999999999874
No 347
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.17 E-value=0.025 Score=58.62 Aligned_cols=33 Identities=36% Similarity=0.576 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
+|.|||.|.+|+++|..|.++|++|+++|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 589999999999999999999999999998754
No 348
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.16 E-value=0.026 Score=54.98 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
++|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 479999999999999999999999999999874
No 349
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.15 E-value=0.026 Score=52.04 Aligned_cols=34 Identities=32% Similarity=0.653 Sum_probs=31.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
++++|||+|-.|.+.|..|.+.|++|+++|+++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 5799999999999999999999999999998753
No 350
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.02 E-value=0.029 Score=50.81 Aligned_cols=36 Identities=33% Similarity=0.448 Sum_probs=30.2
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
-..++|+|||+|.++.-+|..|++.|.+|+++=|++
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 345899999999999999999999999999998875
No 351
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=94.97 E-value=0.036 Score=56.47 Aligned_cols=38 Identities=34% Similarity=0.579 Sum_probs=34.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
.-+.+++|||||..|+=.|..+++-|.+|+|+|+.+++
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~i 208 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRI 208 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 34578999999999999999999999999999999775
No 352
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=94.95 E-value=0.03 Score=54.58 Aligned_cols=33 Identities=33% Similarity=0.592 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
++|.|||+|..||++|..|++.|++|+.+|..+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 589999999999999999999999999999864
No 353
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=94.94 E-value=0.032 Score=57.84 Aligned_cols=37 Identities=24% Similarity=0.469 Sum_probs=34.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG 83 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G 83 (533)
..+|+|||+|.+|+-+|..|++.|.+|+|+|+.+++.
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 202 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL 202 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC
Confidence 3689999999999999999999999999999987654
No 354
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=94.91 E-value=0.036 Score=57.16 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=34.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG 83 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G 83 (533)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 4689999999999999999999999999999987754
No 355
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.89 E-value=0.044 Score=53.17 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.++|.|||+|..|..-|..++.+|++|+++|..+
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999874
No 356
>PRK06370 mercuric reductase; Validated
Probab=94.87 E-value=0.041 Score=57.06 Aligned_cols=38 Identities=29% Similarity=0.579 Sum_probs=34.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGS 84 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG 84 (533)
..+|+|||+|..|+-.|..|++.|.+|+|+|+.+++..
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~ 208 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP 208 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc
Confidence 46899999999999999999999999999999887654
No 357
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.83 E-value=0.038 Score=53.70 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
.++|+|||+|..|...|..|++.|.+|+++.++
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 468999999999999999999999999999986
No 358
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.81 E-value=0.043 Score=48.11 Aligned_cols=36 Identities=39% Similarity=0.534 Sum_probs=30.4
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
.-.+.+|+|+|+|.+|+.||..|...|++|+++|..
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 345679999999999999999999999999999975
No 359
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=94.72 E-value=0.031 Score=48.72 Aligned_cols=36 Identities=33% Similarity=0.288 Sum_probs=31.8
Q ss_pred CCCCCcEEEECCCH-HHHHHHHHHHHCCCeEEEEcCC
Q 009508 44 GKNKKKIVVVGSGW-AGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 44 ~~~~~dVvVIGaG~-aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
.-..++|+|||+|- +|..+|..|.++|.+|+++.+.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 34668999999995 7999999999999999999976
No 360
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.70 E-value=0.044 Score=52.75 Aligned_cols=33 Identities=36% Similarity=0.564 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
++|.|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999763
No 361
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.63 E-value=0.052 Score=56.08 Aligned_cols=35 Identities=40% Similarity=0.614 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
..++|+|||+|-+|+.+|..|+++|++|+++|+.+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 45789999999999999999999999999999863
No 362
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=94.58 E-value=0.051 Score=56.31 Aligned_cols=36 Identities=36% Similarity=0.637 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
..+|+|||+|..|+-.|..|++.|.+|+|+|+.+++
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 204 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRI 204 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCc
Confidence 468999999999999999999999999999998664
No 363
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.56 E-value=0.049 Score=56.47 Aligned_cols=36 Identities=19% Similarity=0.430 Sum_probs=33.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
..+|+|||+|..|+-.|..|++.|.+|+|+|+.+++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~ 210 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL 210 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 468999999999999999999999999999988654
No 364
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.53 E-value=0.044 Score=54.33 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
+++|.|||+|..|...|..|+++|++|++++++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 357999999999999999999999999999975
No 365
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=94.41 E-value=0.51 Score=53.71 Aligned_cols=53 Identities=23% Similarity=0.260 Sum_probs=37.7
Q ss_pred HHhcCCEEEcCceeeEEEeccCCceEEEE--Ee---CCeeeecCEEEEccChhhHHHhhhh
Q 009508 261 MRTRGCEFLDGRRVTDFIYDEERCCISDV--VC---GKETYSAGAVVLAVGISTLQELIKN 316 (533)
Q Consensus 261 l~~~G~~i~~~~~V~~I~~~~~~~~v~~v--~~---~~~~~~ad~VV~a~~~~~~~~ll~~ 316 (533)
+++.|++|++++.|++|..++ .+.+| .. ++.++.+|.|+++.|......|...
T Consensus 361 L~~~GV~i~~~~~v~~i~g~~---~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~ 418 (985)
T TIGR01372 361 ARELGIEVLTGHVVAATEGGK---RVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQ 418 (985)
T ss_pred HHHcCCEEEcCCeEEEEecCC---cEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHh
Confidence 456799999999999997543 22222 21 2357999999999998876666543
No 366
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.40 E-value=0.05 Score=55.26 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
.++|.|||.|..|+..|..|+++|++|+++|.++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~ 37 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH 37 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence 46899999999999999999999999999998643
No 367
>PRK04148 hypothetical protein; Provisional
Probab=94.40 E-value=0.047 Score=45.16 Aligned_cols=34 Identities=41% Similarity=0.570 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
..++++||.| .|...|..|++.|++|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 3689999999 998899999999999999998743
No 368
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=94.38 E-value=0.073 Score=48.20 Aligned_cols=33 Identities=30% Similarity=0.457 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
.++|+|||||-+|+..|..|.+.|.+|+|+...
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 468999999999999999999999999999865
No 369
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.32 E-value=0.05 Score=52.45 Aligned_cols=33 Identities=39% Similarity=0.602 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 469999999999999999999999999999873
No 370
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.22 E-value=0.072 Score=51.47 Aligned_cols=34 Identities=38% Similarity=0.528 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
..+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 3579999999999999999999999999999863
No 371
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.14 E-value=0.063 Score=52.19 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
++|+|||+|..|...|..|++.|++|++++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 36999999999999999999999999999985
No 372
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.12 E-value=0.062 Score=59.39 Aligned_cols=37 Identities=41% Similarity=0.583 Sum_probs=33.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG 83 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G 83 (533)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+++-
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll 176 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM 176 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh
Confidence 3689999999999999999999999999999887653
No 373
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.08 E-value=0.046 Score=43.43 Aligned_cols=34 Identities=32% Similarity=0.431 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
+.++|+|||+|-.|..-+..|.+.|.+|+|+...
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4578999999999999999999999999999976
No 374
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.98 E-value=0.072 Score=51.18 Aligned_cols=33 Identities=36% Similarity=0.580 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.+|.|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 479999999999999999999999999999763
No 375
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.95 E-value=0.07 Score=51.91 Aligned_cols=31 Identities=39% Similarity=0.424 Sum_probs=29.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDD 78 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~ 78 (533)
++|+|||+|..|...|..|+++|++|+++.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 4699999999999999999999999999987
No 376
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=93.90 E-value=0.23 Score=52.75 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=48.2
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~ 309 (533)
+..|...|.+.+++.|++|+.++.|+++..++ |+++++.. ++. .+.|+.||+|+|...
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 181 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRAKAVVLATGGYG 181 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcc
Confidence 45788999998988999999999999999865 88887753 232 688999999999875
No 377
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.90 E-value=0.11 Score=44.80 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=29.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEc
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLD 77 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE 77 (533)
...+|+|||||-.|+.-|..|.+.|++|+|+.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 45789999999999999999999999999995
No 378
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=93.85 E-value=0.12 Score=43.35 Aligned_cols=35 Identities=26% Similarity=0.444 Sum_probs=31.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCe-EEEEcCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFD-VTVLDDG 79 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~-V~vlE~~ 79 (533)
-...+|+|||+|-+|-.+++.|.+.|.+ |+|+-|+
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3567999999999999999999999986 9999886
No 379
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.84 E-value=0.11 Score=46.98 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..++|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4579999999999999999999999999999864
No 380
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.84 E-value=0.085 Score=51.26 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQG--FDVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G--~~V~vlE~~~ 80 (533)
++|.|||+|..|.++|+.|+.+| .+|.++|++.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 47999999999999999999999 5899999864
No 381
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=93.83 E-value=0.085 Score=54.41 Aligned_cols=37 Identities=27% Similarity=0.460 Sum_probs=33.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFG 83 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~G 83 (533)
..+|+|||||.+|+-+|..|++.|.+|+++++.+++.
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 185 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL 185 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC
Confidence 4689999999999999999999999999999887643
No 382
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.82 E-value=0.093 Score=50.83 Aligned_cols=33 Identities=36% Similarity=0.631 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~~ 80 (533)
++|.|||+|..|+..|+.|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 579999999999999999999887 899999853
No 383
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.80 E-value=0.085 Score=50.94 Aligned_cols=33 Identities=45% Similarity=0.703 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 579999999999999999999999999999874
No 384
>PTZ00058 glutathione reductase; Provisional
Probab=93.79 E-value=0.081 Score=55.84 Aligned_cols=36 Identities=22% Similarity=0.469 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
..+|+|||+|..|+-.|..|++.|.+|+|+|+++++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i 272 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRL 272 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 568999999999999999999999999999988653
No 385
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.77 E-value=0.082 Score=55.55 Aligned_cols=35 Identities=34% Similarity=0.424 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
..+|+|||||..|+-+|..|++.|.+|+|+|+.+.
T Consensus 352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~ 386 (515)
T TIGR03140 352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADE 386 (515)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCc
Confidence 46899999999999999999999999999997644
No 386
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=93.74 E-value=0.082 Score=58.65 Aligned_cols=36 Identities=33% Similarity=0.440 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
..+++|||||..|+-+|..|++.|.+|+|+|..+++
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l 180 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML 180 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence 357999999999999999999999999999998765
No 387
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=93.73 E-value=0.087 Score=56.53 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
..+|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~l 347 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQL 347 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcc
Confidence 458999999999999999999999999999998765
No 388
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=93.60 E-value=0.042 Score=50.15 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQ--GFDVTVLDDGNGF 82 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~--G~~V~vlE~~~~~ 82 (533)
+.+|||||++|.+||-.|++. ..+|+|+-+++.+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 368999999999999999985 5689999988765
No 389
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=93.60 E-value=0.09 Score=54.19 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.++|+|||||..|+-+|..|.+.|.+|+|+++.+
T Consensus 272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4689999999999999999999999999999874
No 390
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.54 E-value=0.13 Score=46.49 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~ 79 (533)
...+|+|||+|-.|...|..|++.|+ +++|+|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45789999999999999999999999 69999976
No 391
>PRK06116 glutathione reductase; Validated
Probab=93.53 E-value=0.11 Score=53.80 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
..+|+|||+|.+|+-.|..|++.|.+|+++++++.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~ 202 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP 202 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 468999999999999999999999999999998765
No 392
>PLN02507 glutathione reductase
Probab=93.47 E-value=0.1 Score=54.48 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=33.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
..+|+|||+|..|+-.|..|++.|.+|+|+++.+++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~ 238 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP 238 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence 468999999999999999999999999999998764
No 393
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=93.40 E-value=0.11 Score=51.39 Aligned_cols=33 Identities=39% Similarity=0.580 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G-~~V~vlE~~ 79 (533)
+++|+|||+|-.|..+|+.|++.| .+|+|.+|+
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 468999999999999999999998 899999987
No 394
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.25 E-value=0.1 Score=55.38 Aligned_cols=36 Identities=28% Similarity=0.419 Sum_probs=33.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
..+|+|||||..|+-.|..|++.|.+|+++++.+.+
T Consensus 143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 468999999999999999999999999999998654
No 395
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.20 E-value=0.16 Score=50.66 Aligned_cols=34 Identities=29% Similarity=0.447 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
...+|+|||+|.+|+.+|..|...|.+|++++++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 4567999999999999999999999999999976
No 396
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.13 E-value=0.12 Score=54.38 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
.++|+|||||.+|+-+|..|++.+.+|+|+++.+.
T Consensus 351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE 385 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence 46899999999999999999999999999997754
No 397
>PRK12831 putative oxidoreductase; Provisional
Probab=93.09 E-value=0.13 Score=53.11 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
..++|+|||+|..|+-+|..|.+.|.+|+|+++.+
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 34799999999999999999999999999999764
No 398
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.94 E-value=0.4 Score=50.99 Aligned_cols=59 Identities=19% Similarity=0.273 Sum_probs=48.6
Q ss_pred chhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe----CCe--eeecCEEEEccChhh
Q 009508 250 REKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC----GKE--TYSAGAVVLAVGIST 309 (533)
Q Consensus 250 ~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~----~~~--~~~ad~VV~a~~~~~ 309 (533)
+..|...|.+.+++.|++|+.++.++++..++ +|+++++.. +++ .+.|+.||+|+|...
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 189 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQ-DGAVVGVIAICIETGETVYIKSKATVLATGGAG 189 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcC-CCeEEEEEEEEcCCCcEEEEecCeEEECCCCcc
Confidence 55788999988888899999999999999864 488888754 232 678999999999875
No 399
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=92.86 E-value=0.11 Score=52.78 Aligned_cols=33 Identities=39% Similarity=0.557 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
+|.|||.|..|+..|..|+++|++|++++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 699999999999999999999999999998754
No 400
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=92.82 E-value=0.13 Score=51.14 Aligned_cols=34 Identities=32% Similarity=0.375 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCe-EEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFD-VTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~-V~vlE~~~ 80 (533)
..+|+|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 35899999999999999999999987 99999763
No 401
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.73 E-value=0.19 Score=48.93 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.++|.|||+|..|.+.|..|+++|++|++++++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4679999999999999999999999999999864
No 402
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.73 E-value=0.14 Score=52.68 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=30.2
Q ss_pred CcEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQ--GFDVTVLDDGNG 81 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~--G~~V~vlE~~~~ 81 (533)
++|+|||+|..|+..|..|+++ |++|+.+|.+..
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 5799999999999999999998 588999997643
No 403
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=92.69 E-value=0.18 Score=48.70 Aligned_cols=33 Identities=42% Similarity=0.589 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
++|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999873
No 404
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.69 E-value=0.16 Score=49.01 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
..+|+|||+|.+|+-.|..|++.+.+|+++++.+
T Consensus 141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 4689999999999999999999999999999864
No 405
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.67 E-value=0.14 Score=45.63 Aligned_cols=35 Identities=29% Similarity=0.529 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
..+.|.|||||..|.-.|.-.+..|++|.|++++.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 45789999999999999999999999999999873
No 406
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.65 E-value=0.18 Score=49.56 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
.++|.|||+|..|...|..|+++|++|++++++
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 357999999999999999999999999999986
No 407
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.62 E-value=0.17 Score=49.40 Aligned_cols=33 Identities=24% Similarity=0.561 Sum_probs=30.6
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
++|.|||+|..|...|..|++.|++|++++++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 579999999999999999999999999999763
No 408
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.60 E-value=0.16 Score=49.85 Aligned_cols=31 Identities=29% Similarity=0.405 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
+|.|||+|..|...|..|+++|++|+++.++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 6999999999999999999999999999985
No 409
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.53 E-value=0.25 Score=41.81 Aligned_cols=32 Identities=28% Similarity=0.547 Sum_probs=29.1
Q ss_pred CcEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCC
Q 009508 48 KKIVVVGS-GWAGLGAAHHLSKQGF--DVTVLDDG 79 (533)
Q Consensus 48 ~dVvVIGa-G~aGL~aA~~L~~~G~--~V~vlE~~ 79 (533)
++|+|||+ |-.|.+.|+.|...+. ++.|+|..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN 35 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence 47999999 9999999999999864 89999987
No 410
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=92.44 E-value=0.29 Score=44.13 Aligned_cols=35 Identities=31% Similarity=0.394 Sum_probs=31.8
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
...+.|+|+|.|-.|..+|..|.+.|++|++.|.+
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 34578999999999999999999999999999876
No 411
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.21 E-value=0.21 Score=49.10 Aligned_cols=32 Identities=38% Similarity=0.496 Sum_probs=30.3
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
++|.|||+|..|...|..|++.|++|++++++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 47999999999999999999999999999986
No 412
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=92.15 E-value=0.22 Score=51.46 Aligned_cols=35 Identities=31% Similarity=0.409 Sum_probs=31.7
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
....+|+|||+|.+||.++..+...|.+|.++|.+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~ 197 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR 197 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34578999999999999999999999999999976
No 413
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.15 E-value=0.13 Score=48.42 Aligned_cols=36 Identities=42% Similarity=0.494 Sum_probs=32.2
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
.-..-+|+|||+|++|.-+|.-...-|.+|+++|.+
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 345668999999999999999988889999999987
No 414
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.06 E-value=0.23 Score=51.20 Aligned_cols=34 Identities=41% Similarity=0.506 Sum_probs=31.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.+.|+|+|+|-+|+++|..|+++|++|++.|++.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4579999999999999999999999999999764
No 415
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=92.00 E-value=0.17 Score=49.06 Aligned_cols=33 Identities=36% Similarity=0.507 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
++|.|+|+|..|...|+.|+++|.+|+++=+.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 479999999999999999999998888887764
No 416
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.98 E-value=0.21 Score=51.67 Aligned_cols=34 Identities=18% Similarity=0.090 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.++|+|+|.|.+|.++|..|.+.|.+|++.|.++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 4589999999999999999999999999999753
No 417
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=91.95 E-value=0.3 Score=47.51 Aligned_cols=35 Identities=34% Similarity=0.556 Sum_probs=31.3
Q ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC--eEEEEcCC
Q 009508 45 KNKKKIVVVGSGWAGLGAAHHLSKQGF--DVTVLDDG 79 (533)
Q Consensus 45 ~~~~dVvVIGaG~aGL~aA~~L~~~G~--~V~vlE~~ 79 (533)
+...+|+|||+|-.|.+.|+.|+..|. ++.|+|.+
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 345699999999999999999999987 89999985
No 418
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.93 E-value=0.25 Score=41.39 Aligned_cols=33 Identities=30% Similarity=0.708 Sum_probs=29.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~ 79 (533)
+.+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999999999998 79999965
No 419
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=91.86 E-value=0.28 Score=51.20 Aligned_cols=35 Identities=29% Similarity=0.490 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
-.+|.|||+|..|...|..|+++|++|+++|++..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 46799999999999999999999999999998754
No 420
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.85 E-value=0.24 Score=51.25 Aligned_cols=34 Identities=35% Similarity=0.487 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.++|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 3589999999999999999999999999999764
No 421
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=91.84 E-value=0.45 Score=36.25 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=29.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEcC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQ-GFDVTVLDD 78 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~-G~~V~vlE~ 78 (533)
..++++|+|+|..|..+|..|.+. +.+|.++++
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 456899999999999999999998 688999988
No 422
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.81 E-value=0.29 Score=50.41 Aligned_cols=34 Identities=35% Similarity=0.480 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.++|+|+|.|-+|+++|..|+++|++|++.|..+
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4689999999999999999999999999999764
No 423
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=91.79 E-value=0.28 Score=42.70 Aligned_cols=33 Identities=39% Similarity=0.568 Sum_probs=28.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
+++|.|||-|..|...|..|.++|++|.+++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence 368999999999999999999999999999976
No 424
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=91.74 E-value=0.25 Score=50.53 Aligned_cols=57 Identities=28% Similarity=0.312 Sum_probs=40.3
Q ss_pred CcEEEECCCHHHHHHHHHHHH--------------CCCeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSK--------------QGFDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIK 110 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~--------------~G~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~ 110 (533)
.+|+|||||.+|+-.|..|++ .|.+|+|+|+.+++-..++.. ....+.+.+++.|++
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~------~~~~~~~~L~~~gV~ 244 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQA------LRKYGQRRLRRLGVD 244 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHH------HHHHHHHHHHHCCCE
Confidence 489999999999999999875 478999999987654321111 112344566677776
No 425
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.68 E-value=0.28 Score=47.71 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~~ 80 (533)
++|+|||+|..|.+.|+.|+..|. +|.++|.+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~ 36 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE 36 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence 689999999999999999999876 999999853
No 426
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.67 E-value=0.22 Score=49.99 Aligned_cols=32 Identities=28% Similarity=0.496 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
+|.|||.|..|+..|..|+. |++|+++|.+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence 69999999999999988885 999999998743
No 427
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.60 E-value=0.31 Score=47.29 Aligned_cols=35 Identities=26% Similarity=0.511 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC--eEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGF--DVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~--~V~vlE~~~ 80 (533)
.+.+|+|||+|-.|.++|+.|...|. ++.|+|.+.
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 45699999999999999999998875 799999764
No 428
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.59 E-value=0.3 Score=47.66 Aligned_cols=34 Identities=29% Similarity=0.350 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDGNG 81 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~~~ 81 (533)
++|+|||+|-.|.+.|+.|+..|+ +|+|+|.++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 689999999999999999999995 9999998754
No 429
>PLN02572 UDP-sulfoquinovose synthase
Probab=91.58 E-value=0.38 Score=49.45 Aligned_cols=40 Identities=38% Similarity=0.767 Sum_probs=33.3
Q ss_pred cCCCCCCCCcEEEECC-CHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 40 TNNNGKNKKKIVVVGS-GWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 40 ~~~~~~~~~dVvVIGa-G~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..+...+.++|+|.|| |..|...+.+|.++|++|+++++.
T Consensus 40 ~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~ 80 (442)
T PLN02572 40 GSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNL 80 (442)
T ss_pred CCCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence 3344445578999997 999999999999999999999853
No 430
>PLN02712 arogenate dehydrogenase
Probab=91.54 E-value=0.46 Score=51.25 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=33.5
Q ss_pred CCCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 41 NNNGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 41 ~~~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
++....+++|.|||.|..|-+.|..|.+.|++|++++++
T Consensus 46 ~~~~~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 46 NPDNTTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CCccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 344445678999999999999999999999999999876
No 431
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=91.52 E-value=0.24 Score=47.38 Aligned_cols=31 Identities=29% Similarity=0.307 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
+|.|||.|..|.+.|..|.++|++|++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 6999999999999999999999999999976
No 432
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=91.49 E-value=0.34 Score=46.45 Aligned_cols=34 Identities=32% Similarity=0.529 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~ 79 (533)
..++|+|||+|-+|-++|+.|++.|. +|+|++++
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34689999999999999999999997 79999986
No 433
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=91.47 E-value=0.29 Score=49.18 Aligned_cols=35 Identities=37% Similarity=0.389 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
...+|+|+|+|..|+.+|..+...|.+|+++|.++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 45689999999999999999999999999999864
No 434
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.47 E-value=0.27 Score=50.65 Aligned_cols=33 Identities=39% Similarity=0.547 Sum_probs=29.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..++|+|+|.|.+|.++|..|. +|.+|+|.|..
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~ 37 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDL 37 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHh-CCCEEEEECCC
Confidence 3468999999999999999999 49999999954
No 435
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.41 E-value=0.31 Score=47.89 Aligned_cols=34 Identities=29% Similarity=0.570 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~ 79 (533)
...+|+|||+|-.|..+|..|++.|+ +++|+|..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45689999999999999999999998 89999976
No 436
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.34 E-value=0.32 Score=47.86 Aligned_cols=34 Identities=29% Similarity=0.598 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~ 79 (533)
...+|+|||+|-.|...|..|++.|+ +++|+|.+
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45789999999999999999999998 99999975
No 437
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=91.30 E-value=0.3 Score=53.25 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.-.+|.|||||..|...|+.++.+|++|+++|.+.
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 44679999999999999999999999999999874
No 438
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.30 E-value=0.29 Score=50.94 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
-.+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 3569999999999999999999999999999874
No 439
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=91.21 E-value=0.2 Score=47.26 Aligned_cols=38 Identities=26% Similarity=0.539 Sum_probs=32.7
Q ss_pred CCCCCcEEEECCCHHHHHHHHHHHHC-C-CeEEEEcCCCC
Q 009508 44 GKNKKKIVVVGSGWAGLGAAHHLSKQ-G-FDVTVLDDGNG 81 (533)
Q Consensus 44 ~~~~~dVvVIGaG~aGL~aA~~L~~~-G-~~V~vlE~~~~ 81 (533)
..++++|+|||||.+|++.|..+.++ | -+|.|+|..+.
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 46789999999999999999999887 4 38999998754
No 440
>PLN00016 RNA-binding protein; Provisional
Probab=91.21 E-value=0.27 Score=49.52 Aligned_cols=40 Identities=33% Similarity=0.575 Sum_probs=34.2
Q ss_pred CCCCCCCCcEEEE----CC-CHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 41 NNNGKNKKKIVVV----GS-GWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 41 ~~~~~~~~dVvVI----Ga-G~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.....++++|+|+ || |..|...+..|.++|++|+++.++.
T Consensus 46 ~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 46 AAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred hhcccccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 3445556789999 76 9999999999999999999999874
No 441
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.17 E-value=0.31 Score=50.80 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=30.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..+|+|+|.|.+|++++..|.++|.+|++.|.+
T Consensus 12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 357999999999999999999999999999964
No 442
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.10 E-value=0.41 Score=38.79 Aligned_cols=31 Identities=35% Similarity=0.626 Sum_probs=27.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 50 IVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 50 VvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
|+|+|.|-.|...|..|.+.+.+|+++|.++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999888999999874
No 443
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=91.07 E-value=0.3 Score=53.31 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
..+|.|||||..|...|+.++.+|++|+++|.++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 3579999999999999999999999999999874
No 444
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.07 E-value=0.38 Score=45.34 Aligned_cols=34 Identities=35% Similarity=0.437 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G-~~V~vlE~~ 79 (533)
...+|+|||+|-.|..+|..|++.| .+++|+|..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4578999999999999999999999 589999966
No 445
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.05 E-value=0.32 Score=49.22 Aligned_cols=37 Identities=46% Similarity=0.569 Sum_probs=33.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGF 82 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 82 (533)
..++|+|+|-|.+|+++|..|.+.|.+|++.|..+..
T Consensus 6 ~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 6 QGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred cCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 3678999999999999999999999999999977543
No 446
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.01 E-value=0.3 Score=50.56 Aligned_cols=35 Identities=29% Similarity=0.445 Sum_probs=31.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~~ 80 (533)
...+|+|||+|..|+-+|..|.+.|. +|+++++.+
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 34689999999999999999999998 899999763
No 447
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.95 E-value=0.27 Score=51.23 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
++|.|||+|..|..-|..|+++|++|+|+|+++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 479999999999999999999999999999863
No 448
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=90.90 E-value=0.36 Score=44.52 Aligned_cols=35 Identities=34% Similarity=0.532 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC---eEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGF---DVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~---~V~vlE~~~ 80 (533)
...+|+|+|+|-+|..+|..|.+.|. +|.|+++..
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 44689999999999999999999997 599999873
No 449
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.86 E-value=0.35 Score=46.97 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHCC--CeEEEEcCCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQG--FDVTVLDDGN 80 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G--~~V~vlE~~~ 80 (533)
+|+|||+|-.|.+.|+.|+.+| .++.|+|++.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 6999999999999999999998 5899999864
No 450
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.86 E-value=0.38 Score=46.37 Aligned_cols=35 Identities=29% Similarity=0.411 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
...+|+|||.|..|..+|..|...|.+|++++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45799999999999999999999999999999873
No 451
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=90.84 E-value=0.35 Score=41.45 Aligned_cols=35 Identities=37% Similarity=0.469 Sum_probs=28.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.-+.++|+|=|-.|-.+|..|+..|.+|+|.|.++
T Consensus 22 ~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 22 AGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred CCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 45789999999999999999999999999999874
No 452
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=90.83 E-value=0.35 Score=44.39 Aligned_cols=32 Identities=34% Similarity=0.470 Sum_probs=28.9
Q ss_pred CcEEEEC-CCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 48 KKIVVVG-SGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 48 ~dVvVIG-aG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
++|.||| +|..|.+.|..|+++|++|+++.++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3699997 7999999999999999999999765
No 453
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=90.76 E-value=0.32 Score=46.63 Aligned_cols=33 Identities=36% Similarity=0.580 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
-++|.|||||..|-..|+.++..|++|+++|.+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 468999999999999999999988999999987
No 454
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.52 E-value=0.48 Score=42.88 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~ 79 (533)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 45789999999999999999999997 89999975
No 455
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=90.51 E-value=0.33 Score=53.06 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.-.+|.|||||..|...|+.++.+|++|+++|.++
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 34679999999999999999999999999999874
No 456
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=90.31 E-value=0.33 Score=53.64 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=31.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCe-EEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFD-VTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~-V~vlE~~~ 80 (533)
.++|||||||..|+-+|..|.+.|.+ |+|+++.+
T Consensus 570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 46899999999999999999999987 99999764
No 457
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.30 E-value=0.25 Score=47.22 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=30.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
+.+||+|||||-+|.-||.-|+--=..|+|+|=.+
T Consensus 353 ~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~ 387 (520)
T COG3634 353 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP 387 (520)
T ss_pred CCceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence 45899999999999999999986656899999543
No 458
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.06 E-value=0.49 Score=41.65 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=28.7
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~ 79 (533)
+|+|||+|-.|...|..|++.|+ +++|+|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998 59999976
No 459
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=89.99 E-value=0.38 Score=49.65 Aligned_cols=35 Identities=17% Similarity=0.314 Sum_probs=32.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
..++|+|||+|.+|+-.|..|++.+.+|+++.+.+
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 45789999999999999999999999999999864
No 460
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=89.99 E-value=0.88 Score=34.00 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=31.7
Q ss_pred cchhhHHHHHHHHHhcCCEEEcCceeeEEEeccCCceEEEEEe
Q 009508 249 LREKIFEPWMDSMRTRGCEFLDGRRVTDFIYDEERCCISDVVC 291 (533)
Q Consensus 249 ~~~~l~~~l~~~l~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~ 291 (533)
+.+.+...+.+.+++.|++|++|+.|++|..++ ++ +. |+.
T Consensus 38 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~-~~-~~-V~~ 77 (80)
T PF00070_consen 38 FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDG-DG-VE-VTL 77 (80)
T ss_dssp SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEET-TS-EE-EEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeC-CE-EE-EEE
Confidence 345677778888999999999999999999887 45 44 444
No 461
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.96 E-value=0.42 Score=49.50 Aligned_cols=34 Identities=32% Similarity=0.380 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHH-HHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLG-AAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~-aA~~L~~~G~~V~vlE~~~ 80 (533)
.++|.|||.|-+|++ +|..|.++|++|++.|...
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 357999999999999 5999999999999999764
No 462
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.91 E-value=0.42 Score=48.78 Aligned_cols=33 Identities=30% Similarity=0.494 Sum_probs=30.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..+|.|||-|.+|+++|..|.++|++|++.|.+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~ 35 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKS 35 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCC
Confidence 357999999999999999999999999999965
No 463
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=89.89 E-value=0.26 Score=49.16 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=42.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-------------CeEEEEcCCCCCCCCCcccccccccCCCcHHHHHHHhCCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQG-------------FDVTVLDDGNGFGSPDDISMQGFWYPFRNIFSLVDELGIKP 111 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G-------------~~V~vlE~~~~~GG~~~~G~~~~~~~~~~~~~~~~~lg~~~ 111 (533)
..-+++|||||++|.-.|.+|++.- .+|+|+|+.+++--.++. .......+.++++|++.
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~------~l~~~a~~~L~~~GV~v 226 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPP------KLSKYAERALEKLGVEV 226 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCH------HHHHHHHHHHHHCCCEE
Confidence 3457999999999999999987631 399999999886421111 11234556788888883
No 464
>PRK05866 short chain dehydrogenase; Provisional
Probab=89.84 E-value=0.73 Score=44.49 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=30.0
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 46 NKKKIVVVGS-GWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGa-G~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..+.|+|+|| |-.|...|..|+++|++|+++.++
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3467999997 889999999999999999999876
No 465
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.81 E-value=0.53 Score=45.95 Aligned_cols=35 Identities=29% Similarity=0.358 Sum_probs=31.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G-~~V~vlE~~~ 80 (533)
..++|+|||||-.|.+.|+.|+..| .++.|+|.+.
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 4568999999999999999999988 6899999864
No 466
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=89.80 E-value=0.57 Score=42.73 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
+.++|+|||||-.++.=+..|.+.|.+|+|+-..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4578999999999999999999999999999654
No 467
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=89.79 E-value=0.65 Score=41.69 Aligned_cols=34 Identities=32% Similarity=0.440 Sum_probs=30.4
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 46 NKKKIVVVGS-GWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGa-G~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..++++|+|| |..|..+|..|++.|.+|+++.++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4568999997 999999999999999999999765
No 468
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.74 E-value=0.48 Score=49.62 Aligned_cols=34 Identities=26% Similarity=0.427 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.++|.|||.|.+|+++|..|.++|++|.+.|...
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 4579999999999999999999999999999753
No 469
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.74 E-value=0.52 Score=45.83 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=29.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCC--eEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGF--DVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~--~V~vlE~~ 79 (533)
..+|.|||+|..|.+.|..|.+.|. +|.+++++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 3689999999999999999999985 89999876
No 470
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=89.68 E-value=0.45 Score=51.86 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLS-KQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~-~~G~~V~vlE~~~ 80 (533)
...+|.|||||..|...|..++ +.|++|+++|.++
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 3467999999999999999998 5899999999874
No 471
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=89.67 E-value=0.19 Score=48.68 Aligned_cols=39 Identities=33% Similarity=0.526 Sum_probs=35.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCCCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNGFGSP 85 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~ 85 (533)
+.+.+|||||+.||-.+---.+-|.+|+++|..+.+||-
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~ 249 (506)
T KOG1335|consen 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV 249 (506)
T ss_pred cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc
Confidence 568999999999999999889999999999999999884
No 472
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=89.66 E-value=0.63 Score=48.03 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=31.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
...+|+|+|+|..|+.++..+...|.+|+++|.+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~ 196 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR 196 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3468999999999999999999999999999976
No 473
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=89.65 E-value=0.48 Score=48.66 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=35.0
Q ss_pred CCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCC
Q 009508 42 NNGKNKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGNG 81 (533)
Q Consensus 42 ~~~~~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~~ 81 (533)
...-.-++|+|||+|.+|...|-.|++.|.+|+++=+++.
T Consensus 170 ~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 170 PEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred ccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 3444568999999999999999999999999999998854
No 474
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=89.54 E-value=0.64 Score=39.35 Aligned_cols=31 Identities=29% Similarity=0.528 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~ 79 (533)
+|+|||+|-.|...|..|++.|. +++|+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998 79999976
No 475
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.52 E-value=0.56 Score=44.96 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
..++|+|||.|-.|...|..|+..|.+|++++++.
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35789999999999999999999999999999874
No 476
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.49 E-value=0.44 Score=46.16 Aligned_cols=31 Identities=32% Similarity=0.462 Sum_probs=28.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCC-eEEEEcCCC
Q 009508 50 IVVVGSGWAGLGAAHHLSKQGF-DVTVLDDGN 80 (533)
Q Consensus 50 VvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~~ 80 (533)
|.|||+|..|...|+.|+.+|. +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5899999999999999999876 999999874
No 477
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=89.49 E-value=0.96 Score=45.67 Aligned_cols=35 Identities=23% Similarity=0.527 Sum_probs=31.2
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGS-GWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGa-G~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
..++|+|+|| |..|...+..|.++|++|+++.++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 4467999998 9999999999999999999998763
No 478
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=89.47 E-value=0.6 Score=43.44 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~ 79 (533)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45789999999999999999999996 89999865
No 479
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.31 E-value=0.63 Score=42.40 Aligned_cols=34 Identities=26% Similarity=0.445 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~ 79 (533)
...+|+|||+|-.|...|..|++.|. +++|+|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45789999999999999999999998 59999976
No 480
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=89.21 E-value=0.55 Score=47.09 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
....|+|||.|..|..+|..|+..|.+|+++|.++
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 45689999999999999999999999999999764
No 481
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=89.13 E-value=0.82 Score=39.20 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=30.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G-~~V~vlE~~ 79 (533)
...+++|||+|..|.+.|..|.+.| .+|.+++++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3468999999999999999999986 789999876
No 482
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.04 E-value=0.62 Score=48.37 Aligned_cols=34 Identities=41% Similarity=0.609 Sum_probs=30.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..++|.|+|.|-+|+++|..|.++|.+|++.|+.
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 3457999999999999999999999999999964
No 483
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.93 E-value=0.47 Score=49.05 Aligned_cols=33 Identities=42% Similarity=0.627 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
++|+|||+|..|...|..|.++|++|+++|+++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 479999999999999999999999999999864
No 484
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=88.84 E-value=0.68 Score=46.37 Aligned_cols=34 Identities=29% Similarity=0.532 Sum_probs=31.3
Q ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 46 NKKKIVVVG-SGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIG-aG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..++|+||| .|..|-+.|..|.++|++|++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 457899999 8999999999999999999999975
No 485
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=88.81 E-value=0.59 Score=51.08 Aligned_cols=35 Identities=31% Similarity=0.383 Sum_probs=31.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHH-HCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLS-KQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~-~~G~~V~vlE~~~ 80 (533)
.-.+|.|||||..|...|+.++ ..|++|+++|.++
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 3467999999999999999998 8899999999863
No 486
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=88.80 E-value=0.68 Score=44.06 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=30.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
..++++|+|+|-+|.+.|+.|++.|.+|+++.++
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3468999999999999999999999999999876
No 487
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=88.73 E-value=0.74 Score=43.02 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=30.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~ 79 (533)
...+|+|||+|-.|..+|..|+..|. +++|+|..
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45799999999999999999999997 89999965
No 488
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=88.62 E-value=0.68 Score=44.77 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=30.0
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
++|.|||.|..|...|..|++.|++|++++++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 57999999999999999999999999999876
No 489
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=88.59 E-value=0.79 Score=44.09 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCe-EEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFD-VTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~-V~vlE~~~ 80 (533)
..+.++|+|||=+|.++|+.|++.|.+ |+|+.++.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 346899999999999999999999986 99998863
No 490
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=88.57 E-value=0.82 Score=45.81 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=31.4
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 46 NKKKIVVVGS-GWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGa-G~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
.+++|+|.|| |..|...+..|.++|++|+.+.+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 5578999999 999999999999999999999875
No 491
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.43 E-value=0.75 Score=47.30 Aligned_cols=33 Identities=30% Similarity=0.571 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
.++|.|||-|-+|++++..|+++|++|++.|..
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~ 38 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTR 38 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 467999999999999999999999999999965
No 492
>PRK08328 hypothetical protein; Provisional
Probab=88.40 E-value=0.8 Score=42.39 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=30.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~ 79 (533)
...+|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35689999999999999999999997 79999865
No 493
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=88.39 E-value=0.58 Score=52.71 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=31.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 47 KKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 47 ~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
.++|+|||||..|+-+|..+.+.|.+|+++.+++
T Consensus 447 Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 447 GKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 4789999999999999999999999999999774
No 494
>PLN02602 lactate dehydrogenase
Probab=88.29 E-value=0.87 Score=44.90 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=29.8
Q ss_pred CcEEEECCCHHHHHHHHHHHHCCC--eEEEEcCCC
Q 009508 48 KKIVVVGSGWAGLGAAHHLSKQGF--DVTVLDDGN 80 (533)
Q Consensus 48 ~dVvVIGaG~aGL~aA~~L~~~G~--~V~vlE~~~ 80 (533)
++|+|||+|-.|.++|+.|..+|. ++.|+|.+.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~ 72 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP 72 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 699999999999999999998875 799999763
No 495
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.24 E-value=0.73 Score=44.62 Aligned_cols=31 Identities=26% Similarity=0.520 Sum_probs=28.1
Q ss_pred cEEEECCCHHHHHHHHHHHHCCC--eEEEEcCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGF--DVTVLDDG 79 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~--~V~vlE~~ 79 (533)
+|+|||+|-.|.++|+.|..+|. ++.|+|..
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 33 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 58999999999999999998876 79999975
No 496
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=88.23 E-value=0.79 Score=46.29 Aligned_cols=35 Identities=34% Similarity=0.393 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
..+.|+|||.|..|..+|..|...|.+|+++|.++
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 45689999999999999999999999999999764
No 497
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=88.18 E-value=0.86 Score=42.14 Aligned_cols=34 Identities=32% Similarity=0.551 Sum_probs=30.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQGF-DVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G~-~V~vlE~~ 79 (533)
...+|+|||+|-.|...|..|++.|+ +++|+|..
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 45699999999999999999999997 89999865
No 498
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=88.10 E-value=0.59 Score=45.07 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Q 009508 49 KIVVVGSGWAGLGAAHHLSKQGFDVTVLDDGN 80 (533)
Q Consensus 49 dVvVIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 80 (533)
+|.|||.|..|...|..|++.|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48899999999999999999999999999763
No 499
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=88.02 E-value=0.9 Score=43.43 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=31.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHHCC-CeEEEEcCC
Q 009508 46 NKKKIVVVGSGWAGLGAAHHLSKQG-FDVTVLDDG 79 (533)
Q Consensus 46 ~~~dVvVIGaG~aGL~aA~~L~~~G-~~V~vlE~~ 79 (533)
..++|+|+|+|-+|.++|+.|++.| .+|+|+.|+
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4568999999999999999999999 799999886
No 500
>PRK07060 short chain dehydrogenase; Provisional
Probab=87.93 E-value=1 Score=41.84 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=31.0
Q ss_pred CCCCcEEEECC-CHHHHHHHHHHHHCCCeEEEEcCC
Q 009508 45 KNKKKIVVVGS-GWAGLGAAHHLSKQGFDVTVLDDG 79 (533)
Q Consensus 45 ~~~~dVvVIGa-G~aGL~aA~~L~~~G~~V~vlE~~ 79 (533)
...+.++|.|| |..|...|..|+++|++|+++.++
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~ 42 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGARVVAAARN 42 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC
Confidence 34468999998 899999999999999999999875
Done!