BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009511
(533 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W6C|X Chain X, Ache In Complex With A Bis-(-)-Nor-Meptazinol Derivative
pdb|2W9I|A Chain A, Ache In Complex With Methylene Blue
Length = 586
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 345 PFTASCSVLVSWIYGRTFVSESNTLDKLKLQTWVVPRYIVQYNLPWRREAINSLIEEAIL 404
P S +V+V WIYG F S S+TLD + +V +L +R A L
Sbjct: 125 PRPKSTTVMV-WIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQ 183
Query: 405 EADAKGVKVISLGLLNQ 421
EA ++GLL+Q
Sbjct: 184 EAPG------NVGLLDQ 194
>pdb|3I6M|A Chain A, 3d Structure Of Torpedo Californica Acetylcholinesterase
Complexed With N-Piperidinopropyl-Galanthamine
pdb|3I6Z|A Chain A, 3d Structure Of Torpedo Californica Acetylcholinesterase
Complexed With N-Saccharinohexyl-Galanthamine
Length = 534
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 345 PFTASCSVLVSWIYGRTFVSESNTLDKLKLQTWVVPRYIVQYNLPWRREAINSLIEEAIL 404
P S +V+V WIYG F S S+TLD + +V +L +R A L
Sbjct: 103 PRPKSTTVMV-WIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQ 161
Query: 405 EADAKGVKVISLGLLNQ 421
EA ++GLL+Q
Sbjct: 162 EAPG------NVGLLDQ 172
>pdb|1EEA|A Chain A, Acetylcholinesterase
Length = 534
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 345 PFTASCSVLVSWIYGRTFVSESNTLDKLKLQTWVVPRYIVQYNLPWRREAINSLIEEAIL 404
P S +V+V WIYG F S S+TLD + +V +L +R A L
Sbjct: 104 PRPKSTTVMV-WIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQ 162
Query: 405 EADAKGVKVISLGLLNQ 421
EA ++GLL+Q
Sbjct: 163 EAPG------NVGLLDQ 173
>pdb|2DFP|A Chain A, X-Ray Structure Of Aged Di-Isopropyl-Phosphoro-Fluoridate
(Dfp) Bound To Acetylcholinesterase
Length = 534
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 345 PFTASCSVLVSWIYGRTFVSESNTLDKLKLQTWVVPRYIVQYNLPWRREAINSLIEEAIL 404
P S +V+V WIYG F S S+TLD + +V +L +R A L
Sbjct: 103 PRPKSTTVMV-WIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQ 161
Query: 405 EADAKGVKVISLGLLNQ 421
EA ++GLL+Q
Sbjct: 162 EAPG------NVGLLDQ 172
>pdb|2C58|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With
20mm Acetylthiocholine
Length = 537
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 345 PFTASCSVLVSWIYGRTFVSESNTLDKLKLQTWVVPRYIVQYNLPWRREAINSLIEEAIL 404
P S +V+V WIYG F S S+TLD + +V +L +R A L
Sbjct: 104 PRPKSTTVMV-WIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQ 162
Query: 405 EADAKGVKVISLGLLNQ 421
EA ++GLL+Q
Sbjct: 163 EAPG------NVGLLDQ 173
>pdb|2CEK|A Chain A, Conformational Flexibility In The Peripheral Site Of
Torpedo Californica Acetylcholinesterase Revealed By The
Complex Structure With A Bifunctional Inhibitor
Length = 535
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 345 PFTASCSVLVSWIYGRTFVSESNTLDKLKLQTWVVPRYIVQYNLPWRREAINSLIEEAIL 404
P S +V+V WIYG F S S+TLD + +V +L +R A L
Sbjct: 104 PRPKSTTVMV-WIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQ 162
Query: 405 EADAKGVKVISLGLLNQ 421
EA ++GLL+Q
Sbjct: 163 EAPG------NVGLLDQ 173
>pdb|1GQR|A Chain A, Acetylcholinesterase (E.C. 3.1.1.7) Complexed With
Rivastigmine
pdb|1GQS|A Chain A, Acetylcholinesterase (E.C. 3.1.1.7) Complexed With Nap
pdb|1JJB|A Chain A, A Neutral Molecule In Cation-Binding Site: Specific
Binding Of Peg-Sh To Acetylcholinesterase From Torpedo
Californica
Length = 532
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 345 PFTASCSVLVSWIYGRTFVSESNTLDKLKLQTWVVPRYIVQYNLPWRREAINSLIEEAIL 404
P S +V+V WIYG F S S+TLD + +V +L +R A L
Sbjct: 101 PRPKSTTVMV-WIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQ 159
Query: 405 EADAKGVKVISLGLLNQ 421
EA ++GLL+Q
Sbjct: 160 EAPG------NVGLLDQ 170
>pdb|3GEL|A Chain A, O-Methylphosphorylated Torpedo Acetylcholinesterase
Obtained By Reaction With Methyl Paraoxon (Aged)
Length = 532
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 345 PFTASCSVLVSWIYGRTFVSESNTLDKLKLQTWVVPRYIVQYNLPWRREAINSLIEEAIL 404
P S +V+V WIYG F S S+TLD + +V +L +R A L
Sbjct: 101 PRPKSTTVMV-WIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQ 159
Query: 405 EADAKGVKVISLGLLNQ 421
EA ++GLL+Q
Sbjct: 160 EAPG------NVGLLDQ 170
>pdb|1FSS|A Chain A, Acetylcholinesterase (E.C. 3.1.1.7) Complexed With
Fasciculin-Ii
pdb|1CFJ|A Chain A, Methylphosphonylated Acetylcholinesterase (Aged) Obtained
By Reaction With O-Isopropylmethylphosphonofluoridate
(Gb, Sarin)
pdb|1VXO|A Chain A, Methylphosphonylated Acetylcholinesterase (Aged) Obtained
By Reaction With
O-Ethyl-S-[2-[bis(1-Methylethyl)amino]ethyl]
Methylphosphonothioate (Vx)
pdb|1VXR|A Chain A, O-Ethylmethylphosphonylated Acetylcholinesterase Obtained
By Reaction With
O-Ethyl-S-[2-[bis(1-Methylethyl)amino]ethyl]
Methylphosphonothioate (Vx)
pdb|1QTI|A Chain A, Acetylcholinesterase (E.C.3.1.1.7)
pdb|1QID|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point A) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIE|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point B) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIF|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point C) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIG|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point D) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIH|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point E) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QII|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point F) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIJ|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point G) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIK|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point H) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1QIM|A Chain A, Specific Chemical And Structural Damage At Nine Time
Points (Point I) Caused By Intense Synchrotron Radiation
To Torpedo Californica Acetylcholinesterase
pdb|1EA5|A Chain A, Native Acetylcholinesterase (E.C. 3.1.1.7) From Torpedo
Californica At 1.8a Resolution
pdb|1GPK|A Chain A, Structure Of Acetylcholinesterase Complex With
(+)-Huperzine A At 2.1a Resolution
pdb|1GPN|A Chain A, Structure Of Acetylcholinesterase Complexed With Huperzine
B At 2.35a Resolution
pdb|2C4H|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With
500mm Acetylthiocholine
pdb|2C5F|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium
pdb|2C5G|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With
20mm Thiocholine
pdb|1AMN|A Chain A, Transition State Analog: Acetylcholinesterase Complexed
With M-(N,N,N-Trimethylammonio)trifluoroacetophenone
pdb|1AX9|A Chain A, Acetylcholinesterase Complexed With Edrophonium, Laue Data
pdb|1OCE|A Chain A, Acetylcholinesterase (E.C. 3.1.1.7) Complexed With Mf268
pdb|1VOT|A Chain A, Acetylcholinesterase (E.C. 3.1.1.7) Complexed With
Huperzine A
pdb|2ACE|A Chain A, Native Acetylcholinesterase (E.C. 3.1.1.7) From Torpedo
Californica
pdb|2ACK|A Chain A, Acetylcholinesterase Complexed With Edrophonium,
Monochromatic Data
pdb|2V96|A Chain A, Structure Of The Unphotolysed Complex Of Tcache With 1-(2-
Nitrophenyl)-2,2,2-Trifluoroethyl-Arsenocholine At 100k
pdb|2V96|B Chain B, Structure Of The Unphotolysed Complex Of Tcache With 1-(2-
Nitrophenyl)-2,2,2-Trifluoroethyl-Arsenocholine At 100k
pdb|2V97|A Chain A, Structure Of The Unphotolysed Complex Of Tcache With
1-(2- Nitrophenyl)-2,2,2-Trifluoroethyl-Arsenocholine
After A 9 Seconds Annealing To Room Temperature
pdb|2V97|B Chain B, Structure Of The Unphotolysed Complex Of Tcache With
1-(2- Nitrophenyl)-2,2,2-Trifluoroethyl-Arsenocholine
After A 9 Seconds Annealing To Room Temperature
pdb|2V98|A Chain A, Structure Of The Complex Of Tcache With
1-(2-Nitrophenyl)-2, 2,2-Trifluoroethyl-Arsenocholine
After A 9 Seconds Annealing To Room Temperature, During
The First 5 Seconds Of Which Laser Irradiation At 266nm
Took Place
pdb|2V98|B Chain B, Structure Of The Complex Of Tcache With
1-(2-Nitrophenyl)-2, 2,2-Trifluoroethyl-Arsenocholine
After A 9 Seconds Annealing To Room Temperature, During
The First 5 Seconds Of Which Laser Irradiation At 266nm
Took Place
pdb|2VA9|A Chain A, Structure Of Native Tcache After A 9 Seconds Annealing To
Room Temperature During The First 5 Seconds Of Which
Laser Irradiation At 266nm Took Place
pdb|2VA9|B Chain B, Structure Of Native Tcache After A 9 Seconds Annealing To
Room Temperature During The First 5 Seconds Of Which
Laser Irradiation At 266nm Took Place
pdb|2VJA|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset A At 100k
pdb|2VJA|B Chain B, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset A At 100k
pdb|2VJB|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset D At 100k
pdb|2VJB|B Chain B, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset D At 100k
pdb|2VJC|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-oxo-n,n,n-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset A At 150k
pdb|2VJC|B Chain B, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-oxo-n,n,n-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset A At 150k
pdb|2VJD|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset C At 150k
pdb|2VJD|B Chain B, Torpedo Californica Acetylcholinesterase In Complex With A
Non Hydrolysable Substrate Analogue, 4-Oxo-N,N,N-
Trimethylpentanaminium - Orthorhombic Space Group -
Dataset C At 150k
pdb|2VT6|A Chain A, Native Torpedo Californica Acetylcholinesterase Collected
With A Cumulated Dose Of 9400000 Gy
pdb|2VT6|B Chain B, Native Torpedo Californica Acetylcholinesterase Collected
With A Cumulated Dose Of 9400000 Gy
pdb|2VT7|A Chain A, Native Torpedo Californica Acetylcholinesterase Collected
With A Cumulated Dose Of 800000 Gy
pdb|2VT7|B Chain B, Native Torpedo Californica Acetylcholinesterase Collected
With A Cumulated Dose Of 800000 Gy
pdb|2WFZ|A Chain A, Non-Aged Conjugate Of Torpedo Californica
Acetylcholinesterase With Soman
pdb|2WG0|A Chain A, Aged Conjugate Of Torpedo Californica Acetylcholinesterase
With Soman (Obtained By In Crystallo Aging)
pdb|2WG1|A Chain A, Ternary Complex Of The Aged Conjugate Of Torpedo
Californica Aceylcholinesterase With Soman And 2-Pam
pdb|2WG2|A Chain A, Non-Aged Conjugate Of Torpedo Californica
Acetylcholinesterase With Soman (Alternative Refinement)
pdb|2XI4|A Chain A, Torpedo Californica Acetylcholinesterase In Complex With
Aflatoxin B1 (Orthorhombic Space Group)
pdb|2XI4|B Chain B, Torpedo Californica Acetylcholinesterase In Complex With
Aflatoxin B1 (Orthorhombic Space Group)
Length = 537
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 345 PFTASCSVLVSWIYGRTFVSESNTLDKLKLQTWVVPRYIVQYNLPWRREAINSLIEEAIL 404
P S +V+V WIYG F S S+TLD + +V +L +R A L
Sbjct: 104 PRPKSTTVMV-WIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQ 162
Query: 405 EADAKGVKVISLGLLNQ 421
EA ++GLL+Q
Sbjct: 163 EAPG------NVGLLDQ 173
>pdb|1SOM|A Chain A, Torpedo Californica Acetylcholinesterase Inhibited By
Nerve Agent Gd (Soman).
pdb|1DX6|A Chain A, Structure Of Acetylcholinesterase Complexed With
(-)-Galanthamine At 2.3a Resolution
pdb|1E3Q|A Chain A, Torpedo Californica Acetylcholinesterase Complexed With
Bw284c51
pdb|1E66|A Chain A, Structure Of Acetylcholinesterase Complexed With
(-)-Huprine X At 2.1a Resolution
pdb|1HBJ|A Chain A, X-Ray Crystal Structure Of Complex Between Torpedo
Californica Ache And A Reversible Inhibitor, 4-Amino-5-
Fluo Ro-2-Methyl-3-(3-Trifluoroacetylbenzylthiomethyl)
Quinoline
pdb|1H22|A Chain A, Structure Of Acetylcholinesterase (E.C. 3.1.1.7) Complexed
With (S,S)-(-)-Bis(10)-Hupyridone At 2.15a Resolution
pdb|1H23|A Chain A, Structure Of Acetylcholinesterase (E.C. 3.1.1.7) Complexed
With (S,S)-(-)-Bis(12)-Hupyridone At 2.15a Resolution
pdb|1W4L|A Chain A, Complex Of Tcache With Bis-Acting Galanthamine Derivative
pdb|1W6R|A Chain A, Complex Of Tcache With Galanthamine Derivative
pdb|1W75|A Chain A, Native Orthorhombic Form Of Torpedo Californica
Acetylcholinesterase (Ache)
pdb|1W75|B Chain B, Native Orthorhombic Form Of Torpedo Californica
Acetylcholinesterase (Ache)
pdb|1W76|A Chain A, Orthorhombic Form Of Torpedo Californica
Acetylcholinesterase (Ache) Complexed With Bis-Acting
Galanthamine Derivative
pdb|1W76|B Chain B, Orthorhombic Form Of Torpedo Californica
Acetylcholinesterase (Ache) Complexed With Bis-Acting
Galanthamine Derivative
pdb|1ODC|A Chain A, Structure Of Acetylcholinesterase (E.C. 3.1.1.7) Complexed
With N-4'-Quinolyl-N'-9"-(1",2",3",4"
-Tetrahydroacridinyl)-1,8-Diaminooctane At 2.2a
Resolution
pdb|1U65|A Chain A, Ache W. Cpt-11
pdb|1ZGB|A Chain A, Crystal Structure Of Torpedo Californica
Acetylcholinesterase In Complex With An
(R)-Tacrine(10)-Hupyridone Inhibitor.
pdb|1ZGC|A Chain A, Crystal Structure Of Torpedo Californica
Acetylcholinesterase In Complex With An
(Rs)-Tacrine(10)-Hupyridone Inhibitor.
pdb|1ZGC|B Chain B, Crystal Structure Of Torpedo Californica
Acetylcholinesterase In Complex With An
(Rs)-Tacrine(10)-Hupyridone Inhibitor.
pdb|2BAG|A Chain A, 3d Structure Of Torpedo Californica Acetylcholinesterase
Complexed With Ganstigmine
pdb|2CKM|A Chain A, Torpedo Californica Acetylcholinesterase Complexed With
Alkylene-Linked Bis-Tacrine Dimer (7 Carbon Linker)
pdb|2CMF|A Chain A, Torpedo Californica Acetylcholinesterase Complexed With
Alkylene-Linked Bis-Tacrine Dimer (5 Carbon Linker)
pdb|2J4F|A Chain A, Torpedo Acetylcholinesterase - Hg Heavy-Atom Derivative
pdb|1EVE|A Chain A, Three Dimensional Structure Of The Anti-Alzheimer Drug,
E2020 (Aricept), Complexed With Its Target
Acetylcholinesterase
pdb|2J3Q|A Chain A, Torpedo Acetylcholinesterase Complexed With Fluorophore
Thioflavin T
pdb|2VQ6|A Chain A, Torpedo Californica Acetylcholinesterase Complexed With 2-
Pam
pdb|2J3D|A Chain A, Native Monoclinic Form Of Torpedo Acetylcholinesterase
pdb|3M3D|A Chain A, Crystal Structure Of Acetylcholinesterase In Complex With
Xenon
pdb|3ZV7|A Chain A, Torpedo Californica Acetylcholinesterase Inhibition By
Bisnorcymserine
Length = 543
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 345 PFTASCSVLVSWIYGRTFVSESNTLDKLKLQTWVVPRYIVQYNLPWRREAINSLIEEAIL 404
P S +V+V WIYG F S S+TLD + +V +L +R A L
Sbjct: 104 PRPKSTTVMV-WIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQ 162
Query: 405 EADAKGVKVISLGLLNQ 421
EA ++GLL+Q
Sbjct: 163 EAPG------NVGLLDQ 173
>pdb|1UT6|A Chain A, Structure Of Acetylcholinesterase (E.C. 3.1.1.7) Complexed
With N-9-(1',2',3',4'-Tetrahydroacridinyl)-1,8-
Diaminooctane At 2.4 Angstroms Resolution.
pdb|1ACJ|A Chain A, Quaternary Ligand Binding To Aromatic Residues In The
Active-Site Gorge Of Acetylcholinesterase
pdb|1ACL|A Chain A, Quaternary Ligand Binding To Aromatic Residues In The
Active-Site Gorge Of Acetylcholinesterase
Length = 537
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 345 PFTASCSVLVSWIYGRTFVSESNTLDKLKLQTWVVPRYIVQYNLPWRREAINSLIEEAIL 404
P S +V+V WIYG F S S+TLD + +V +L +R A L
Sbjct: 104 PRPKSTTVMV-WIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFGFLALHGSQ 162
Query: 405 EADAKGVKVISLGLLNQ 421
EA ++GLL+Q
Sbjct: 163 EAPG------NVGLLDQ 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.139 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,560,990
Number of Sequences: 62578
Number of extensions: 557498
Number of successful extensions: 1526
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1525
Number of HSP's gapped (non-prelim): 12
length of query: 533
length of database: 14,973,337
effective HSP length: 103
effective length of query: 430
effective length of database: 8,527,803
effective search space: 3666955290
effective search space used: 3666955290
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)