Query 009512
Match_columns 533
No_of_seqs 379 out of 2989
Neff 9.2
Searched_HMMs 46136
Date Thu Mar 28 14:01:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00206 DEAD-box ATP-dependen 100.0 8E-104 2E-108 834.5 54.8 503 10-518 2-504 (518)
2 KOG0331 ATP-dependent RNA heli 100.0 1.5E-79 3.2E-84 618.4 38.0 428 86-519 16-478 (519)
3 KOG0339 ATP-dependent RNA heli 100.0 5.5E-76 1.2E-80 571.2 37.3 428 85-520 177-606 (731)
4 KOG0333 U5 snRNP-like RNA heli 100.0 1.2E-75 2.6E-80 571.9 34.1 411 105-518 215-654 (673)
5 KOG0336 ATP-dependent RNA heli 100.0 2.7E-75 5.9E-80 553.2 32.5 424 86-517 167-600 (629)
6 PTZ00110 helicase; Provisional 100.0 5.4E-73 1.2E-77 601.0 50.9 428 85-519 83-514 (545)
7 KOG0335 ATP-dependent RNA heli 100.0 4.6E-71 1E-75 547.2 32.5 395 121-516 60-471 (482)
8 KOG0341 DEAD-box protein abstr 100.0 2.6E-72 5.6E-77 529.6 21.6 407 106-516 141-556 (610)
9 KOG0330 ATP-dependent RNA heli 100.0 1.9E-70 4.1E-75 518.5 32.3 365 133-507 59-425 (476)
10 KOG0334 RNA helicase [RNA proc 100.0 3.2E-70 7E-75 576.3 34.8 456 68-531 301-775 (997)
11 COG0513 SrmB Superfamily II DN 100.0 3.4E-66 7.4E-71 543.8 42.4 371 135-513 29-408 (513)
12 PRK04837 ATP-dependent RNA hel 100.0 1.2E-63 2.6E-68 518.6 43.7 369 134-505 7-378 (423)
13 KOG0338 ATP-dependent RNA heli 100.0 9E-65 1.9E-69 493.8 29.3 373 134-513 180-562 (691)
14 KOG0328 Predicted ATP-dependen 100.0 2.9E-64 6.3E-69 457.2 30.6 374 131-514 23-398 (400)
15 PRK10590 ATP-dependent RNA hel 100.0 9.8E-62 2.1E-66 507.6 44.4 366 136-505 2-368 (456)
16 PRK04537 ATP-dependent RNA hel 100.0 5.3E-61 1.1E-65 510.9 43.8 369 133-504 7-379 (572)
17 PRK11776 ATP-dependent RNA hel 100.0 1.7E-60 3.7E-65 500.3 42.7 359 134-503 3-363 (460)
18 KOG0340 ATP-dependent RNA heli 100.0 1.6E-61 3.5E-66 452.7 30.5 367 133-507 5-379 (442)
19 KOG0345 ATP-dependent RNA heli 100.0 1.5E-60 3.3E-65 461.0 36.3 355 136-494 5-369 (567)
20 KOG0342 ATP-dependent RNA heli 100.0 3E-61 6.5E-66 469.1 31.2 361 133-498 80-446 (543)
21 PRK11634 ATP-dependent RNA hel 100.0 4.2E-60 9.1E-65 506.5 43.1 361 134-504 5-367 (629)
22 KOG0326 ATP-dependent RNA heli 100.0 1.8E-62 4E-67 452.5 19.5 370 134-514 84-454 (459)
23 PRK11192 ATP-dependent RNA hel 100.0 2.5E-59 5.4E-64 488.5 44.7 363 136-504 2-367 (434)
24 PRK01297 ATP-dependent RNA hel 100.0 1.3E-58 2.8E-63 487.4 44.7 379 133-514 85-469 (475)
25 KOG0343 RNA Helicase [RNA proc 100.0 1.8E-59 3.8E-64 460.6 31.7 372 110-493 49-426 (758)
26 KOG0348 ATP-dependent RNA heli 100.0 3.3E-59 7.2E-64 457.3 30.4 363 134-497 135-562 (708)
27 PTZ00424 helicase 45; Provisio 100.0 1.4E-56 3.1E-61 464.2 41.9 369 134-512 27-397 (401)
28 KOG0346 RNA helicase [RNA proc 100.0 9.1E-57 2E-61 431.0 28.4 367 135-504 19-425 (569)
29 KOG0344 ATP-dependent RNA heli 100.0 9.6E-57 2.1E-61 447.7 28.8 401 113-517 110-523 (593)
30 KOG0347 RNA helicase [RNA proc 100.0 1.6E-57 3.6E-62 446.7 19.2 371 130-504 176-585 (731)
31 KOG0327 Translation initiation 100.0 1.6E-53 3.5E-58 405.0 26.2 368 134-513 25-394 (397)
32 KOG0337 ATP-dependent RNA heli 100.0 5.8E-54 1.3E-58 409.9 21.6 363 134-504 20-383 (529)
33 TIGR03817 DECH_helic helicase/ 100.0 7.7E-52 1.7E-56 451.3 38.8 345 141-503 20-402 (742)
34 KOG0332 ATP-dependent RNA heli 100.0 5.1E-52 1.1E-56 391.0 28.3 375 128-515 83-471 (477)
35 KOG0350 DEAD-box ATP-dependent 100.0 1.7E-51 3.6E-56 400.7 27.4 363 133-503 125-554 (620)
36 KOG4284 DEAD box protein [Tran 100.0 5.3E-51 1.1E-55 406.8 25.8 355 126-491 16-381 (980)
37 PLN03137 ATP-dependent DNA hel 100.0 2.7E-49 5.9E-54 428.2 40.1 340 136-499 436-797 (1195)
38 TIGR00614 recQ_fam ATP-depende 100.0 2.1E-48 4.6E-53 408.3 36.4 326 152-500 6-344 (470)
39 PRK02362 ski2-like helicase; P 100.0 1E-47 2.2E-52 423.3 33.4 335 136-489 2-397 (737)
40 PRK11057 ATP-dependent DNA hel 100.0 1.1E-46 2.4E-51 405.3 38.2 333 141-498 8-352 (607)
41 PRK00254 ski2-like helicase; P 100.0 1.7E-46 3.8E-51 412.6 34.7 339 136-490 2-389 (720)
42 TIGR01389 recQ ATP-dependent D 100.0 4.4E-46 9.6E-51 401.8 35.5 326 149-499 4-341 (591)
43 PRK13767 ATP-dependent helicas 100.0 4.1E-45 9E-50 406.2 38.2 342 142-487 18-396 (876)
44 PRK01172 ski2-like helicase; P 100.0 1.7E-44 3.7E-49 395.2 33.3 344 136-498 2-388 (674)
45 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.2E-44 7E-49 384.0 33.3 318 148-487 6-389 (844)
46 TIGR00580 mfd transcription-re 100.0 3.8E-43 8.3E-48 386.4 41.1 366 96-489 383-770 (926)
47 KOG0329 ATP-dependent RNA heli 100.0 6.5E-46 1.4E-50 333.0 14.9 335 133-512 40-379 (387)
48 PRK10917 ATP-dependent DNA hel 100.0 5.1E-42 1.1E-46 373.0 41.3 340 144-508 248-608 (681)
49 PRK10689 transcription-repair 100.0 4E-42 8.8E-47 386.0 41.5 395 96-517 532-952 (1147)
50 TIGR00643 recG ATP-dependent D 100.0 7.5E-42 1.6E-46 369.4 40.5 349 144-517 223-594 (630)
51 COG1201 Lhr Lhr-like helicases 100.0 4E-42 8.7E-47 365.9 31.8 341 142-488 8-361 (814)
52 COG0514 RecQ Superfamily II DN 100.0 9.7E-42 2.1E-46 350.8 30.4 332 148-502 7-350 (590)
53 PRK09751 putative ATP-dependen 100.0 2E-40 4.2E-45 374.0 32.7 307 177-486 1-382 (1490)
54 PRK09401 reverse gyrase; Revie 100.0 6.4E-40 1.4E-44 369.1 35.9 301 148-475 71-430 (1176)
55 PHA02653 RNA helicase NPH-II; 100.0 1.5E-39 3.3E-44 346.5 33.0 312 160-491 167-516 (675)
56 PRK12898 secA preprotein trans 100.0 1.3E-38 2.8E-43 334.2 33.8 318 154-491 101-588 (656)
57 COG1111 MPH1 ERCC4-like helica 100.0 4.8E-38 1E-42 309.5 34.1 323 155-490 13-482 (542)
58 PHA02558 uvsW UvsW helicase; P 100.0 1.4E-38 3E-43 335.7 32.0 306 155-486 112-449 (501)
59 COG1204 Superfamily II helicas 100.0 4.2E-39 9.1E-44 347.6 28.5 335 140-488 14-407 (766)
60 PRK14701 reverse gyrase; Provi 100.0 9.7E-39 2.1E-43 366.5 32.7 329 145-498 67-465 (1638)
61 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.9E-38 1.1E-42 342.7 32.9 304 161-491 6-338 (819)
62 TIGR01054 rgy reverse gyrase. 100.0 1.2E-37 2.6E-42 351.3 35.4 290 145-460 66-408 (1171)
63 COG1202 Superfamily II helicas 100.0 2.1E-38 4.5E-43 313.7 25.1 337 136-489 195-553 (830)
64 PRK11664 ATP-dependent RNA hel 100.0 1.3E-37 2.8E-42 340.2 30.0 304 161-491 9-341 (812)
65 PRK09200 preprotein translocas 100.0 2.8E-37 6.1E-42 330.7 31.5 319 153-491 75-543 (790)
66 TIGR01587 cas3_core CRISPR-ass 100.0 3.1E-37 6.7E-42 314.6 30.4 299 174-490 1-337 (358)
67 TIGR03714 secA2 accessory Sec 100.0 1.7E-36 3.7E-41 321.6 31.5 316 159-491 70-539 (762)
68 TIGR00963 secA preprotein tran 100.0 4.8E-36 1E-40 316.2 32.5 318 154-491 54-519 (745)
69 PRK13766 Hef nuclease; Provisi 100.0 9.4E-35 2E-39 324.2 39.2 323 155-490 13-480 (773)
70 KOG0349 Putative DEAD-box RNA 100.0 1.1E-36 2.3E-41 292.1 19.9 300 211-510 287-668 (725)
71 COG1205 Distinct helicase fami 100.0 1.7E-35 3.8E-40 324.0 32.2 334 142-488 55-421 (851)
72 KOG0952 DNA/RNA helicase MER3/ 100.0 9.4E-36 2E-40 312.8 25.9 338 153-499 106-501 (1230)
73 KOG0351 ATP-dependent DNA heli 100.0 4.8E-35 1E-39 318.0 28.1 329 149-499 256-602 (941)
74 KOG0354 DEAD-box like helicase 100.0 1.3E-34 2.9E-39 301.2 28.8 321 155-488 60-528 (746)
75 TIGR03158 cas3_cyano CRISPR-as 100.0 9E-34 2E-38 286.4 32.0 290 161-474 1-357 (357)
76 KOG0352 ATP-dependent DNA heli 100.0 4.9E-35 1.1E-39 280.4 21.1 333 145-499 6-372 (641)
77 TIGR00603 rad25 DNA repair hel 100.0 1.3E-33 2.7E-38 299.9 29.1 320 156-504 254-624 (732)
78 PRK11131 ATP-dependent RNA hel 100.0 6.1E-33 1.3E-37 308.3 30.2 303 160-492 77-414 (1294)
79 PRK05580 primosome assembly pr 100.0 9.8E-32 2.1E-36 291.4 34.9 312 157-490 144-550 (679)
80 KOG0353 ATP-dependent DNA heli 100.0 5.1E-32 1.1E-36 256.1 24.1 339 138-498 74-476 (695)
81 KOG0951 RNA helicase BRR2, DEA 100.0 5.6E-32 1.2E-36 287.6 24.5 349 141-499 295-712 (1674)
82 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3.5E-31 7.6E-36 295.4 30.1 304 163-491 73-406 (1283)
83 COG1200 RecG RecG-like helicas 100.0 3.2E-30 7E-35 264.8 34.5 350 142-517 247-619 (677)
84 PRK04914 ATP-dependent helicas 100.0 2.3E-30 5E-35 284.2 33.2 331 157-503 152-617 (956)
85 COG1061 SSL2 DNA or RNA helica 100.0 1.4E-30 2.9E-35 269.7 26.2 292 156-475 35-375 (442)
86 PRK13104 secA preprotein trans 100.0 1E-29 2.3E-34 271.8 32.2 315 157-491 82-589 (896)
87 TIGR00595 priA primosomal prot 100.0 1.2E-29 2.7E-34 265.6 30.6 290 176-489 1-381 (505)
88 cd00268 DEADc DEAD-box helicas 100.0 5.8E-30 1.3E-34 239.8 25.0 201 137-342 1-202 (203)
89 PRK09694 helicase Cas3; Provis 100.0 6.5E-29 1.4E-33 271.2 35.6 312 155-478 284-664 (878)
90 PRK12904 preprotein translocas 100.0 3.6E-29 7.9E-34 267.6 29.7 315 157-491 81-575 (830)
91 COG1197 Mfd Transcription-repa 100.0 3.1E-28 6.8E-33 263.4 33.5 368 96-489 526-913 (1139)
92 PRK12899 secA preprotein trans 100.0 1.5E-28 3.3E-33 262.3 30.5 148 138-297 65-228 (970)
93 KOG0950 DNA polymerase theta/e 100.0 1.1E-28 2.3E-33 258.9 26.3 347 136-499 202-621 (1008)
94 PRK12906 secA preprotein trans 100.0 1.1E-28 2.4E-33 262.9 26.4 315 157-491 80-555 (796)
95 COG4098 comFA Superfamily II D 100.0 8.6E-27 1.9E-31 218.8 30.4 308 157-495 97-422 (441)
96 KOG0947 Cytoplasmic exosomal R 100.0 9.3E-28 2E-32 250.1 24.5 310 157-489 297-723 (1248)
97 PRK11448 hsdR type I restricti 100.0 5.9E-27 1.3E-31 263.0 29.6 310 156-478 412-802 (1123)
98 COG4581 Superfamily II RNA hel 100.0 2.3E-27 4.9E-32 256.7 24.8 316 151-487 114-535 (1041)
99 KOG0948 Nuclear exosomal RNA h 100.0 7.7E-28 1.7E-32 245.0 19.6 308 157-489 129-539 (1041)
100 PRK13107 preprotein translocas 100.0 1.4E-26 3E-31 247.2 28.0 315 157-491 82-593 (908)
101 PF00270 DEAD: DEAD/DEAH box h 99.9 5.5E-26 1.2E-30 206.3 21.3 164 159-330 1-168 (169)
102 PLN03142 Probable chromatin-re 99.9 2.2E-25 4.8E-30 245.9 28.0 318 157-489 169-599 (1033)
103 COG1643 HrpA HrpA-like helicas 99.9 6.2E-24 1.3E-28 228.9 24.5 309 160-491 53-389 (845)
104 KOG0922 DEAH-box RNA helicase 99.9 1.6E-23 3.4E-28 213.6 25.7 310 160-492 54-393 (674)
105 COG1203 CRISPR-associated heli 99.9 9.1E-23 2E-27 223.7 24.2 323 158-492 196-553 (733)
106 PRK12900 secA preprotein trans 99.9 1.8E-22 4E-27 216.6 25.7 145 359-506 576-732 (1025)
107 COG1110 Reverse gyrase [DNA re 99.9 4.5E-22 9.8E-27 210.4 28.1 287 145-460 70-416 (1187)
108 TIGR00631 uvrb excinuclease AB 99.9 1.8E-21 4E-26 208.9 33.3 135 364-500 425-564 (655)
109 KOG0385 Chromatin remodeling c 99.9 5.3E-22 1.1E-26 203.6 25.1 315 157-489 167-599 (971)
110 TIGR01407 dinG_rel DnaQ family 99.9 3.6E-21 7.8E-26 215.3 32.8 346 142-503 231-830 (850)
111 KOG0923 mRNA splicing factor A 99.9 7.3E-22 1.6E-26 199.5 23.3 310 157-488 265-605 (902)
112 COG1198 PriA Primosomal protei 99.9 2.9E-20 6.4E-25 197.8 32.2 316 156-491 197-605 (730)
113 COG4096 HsdR Type I site-speci 99.9 1.6E-21 3.4E-26 203.5 21.9 296 156-476 164-525 (875)
114 KOG0920 ATP-dependent RNA heli 99.9 3.2E-21 7E-26 207.1 23.7 314 158-490 174-545 (924)
115 PRK05298 excinuclease ABC subu 99.9 6.8E-20 1.5E-24 198.3 33.6 149 365-515 430-592 (652)
116 TIGR00348 hsdR type I site-spe 99.9 3E-20 6.5E-25 201.8 30.6 302 157-476 238-634 (667)
117 PRK12326 preprotein translocas 99.9 2.8E-20 6.1E-25 194.7 28.2 314 157-491 78-549 (764)
118 COG0556 UvrB Helicase subunit 99.9 5.5E-20 1.2E-24 182.6 27.1 170 314-492 386-560 (663)
119 KOG0949 Predicted helicase, DE 99.9 3.6E-21 7.9E-26 201.6 19.4 158 157-325 511-672 (1330)
120 KOG0926 DEAH-box RNA helicase 99.9 2.5E-20 5.4E-25 191.7 23.5 306 162-489 261-704 (1172)
121 KOG0924 mRNA splicing factor A 99.9 3.6E-20 7.9E-25 187.6 23.6 308 159-489 358-697 (1042)
122 smart00487 DEXDc DEAD-like hel 99.9 5E-20 1.1E-24 171.0 21.7 186 153-346 4-192 (201)
123 PRK13103 secA preprotein trans 99.9 1.3E-19 2.8E-24 194.3 27.1 316 156-491 81-593 (913)
124 KOG0951 RNA helicase BRR2, DEA 99.9 2.3E-21 4.9E-26 207.5 13.2 344 129-499 1116-1504(1674)
125 KOG0387 Transcription-coupled 99.9 4E-20 8.7E-25 190.8 21.1 329 157-499 205-671 (923)
126 PRK07246 bifunctional ATP-depe 99.8 1.1E-18 2.4E-23 192.8 31.4 327 154-503 243-799 (820)
127 KOG0384 Chromodomain-helicase 99.8 7.5E-20 1.6E-24 196.4 13.9 318 156-489 369-811 (1373)
128 KOG4150 Predicted ATP-dependen 99.8 2.6E-19 5.5E-24 178.1 15.6 346 152-508 281-661 (1034)
129 PRK12903 secA preprotein trans 99.8 1.1E-17 2.3E-22 177.8 28.3 330 154-505 76-560 (925)
130 KOG0390 DNA repair protein, SN 99.8 9.3E-18 2E-22 177.8 27.4 320 157-485 238-701 (776)
131 COG4889 Predicted helicase [Ge 99.8 2E-19 4.3E-24 186.5 11.2 359 133-506 138-618 (1518)
132 CHL00122 secA preprotein trans 99.8 1.9E-17 4.1E-22 177.0 26.6 276 153-449 73-491 (870)
133 KOG1123 RNA polymerase II tran 99.8 1.2E-18 2.7E-23 171.1 15.1 311 156-494 301-658 (776)
134 PRK08074 bifunctional ATP-depe 99.8 7.1E-17 1.5E-21 181.7 30.3 136 368-503 738-909 (928)
135 KOG0389 SNF2 family DNA-depend 99.8 1.7E-17 3.6E-22 171.4 20.6 320 157-490 399-889 (941)
136 TIGR03117 cas_csf4 CRISPR-asso 99.8 7.5E-16 1.6E-20 163.2 33.3 121 380-503 469-631 (636)
137 KOG0925 mRNA splicing factor A 99.8 9E-17 2E-21 157.7 22.8 327 134-489 24-387 (699)
138 cd00079 HELICc Helicase superf 99.8 1.1E-17 2.3E-22 144.7 14.7 120 365-485 12-131 (131)
139 PRK12902 secA preprotein trans 99.8 5.6E-16 1.2E-20 165.5 28.9 274 157-449 85-506 (939)
140 KOG0392 SNF2 family DNA-depend 99.7 8.8E-17 1.9E-21 172.5 19.6 325 157-489 975-1454(1549)
141 KOG1002 Nucleotide excision re 99.7 5.2E-16 1.1E-20 152.6 21.7 124 365-489 620-749 (791)
142 KOG1000 Chromatin remodeling p 99.7 3.1E-15 6.8E-20 147.3 26.1 307 156-485 197-597 (689)
143 PF00271 Helicase_C: Helicase 99.7 2.9E-17 6.4E-22 128.4 9.2 77 400-477 2-78 (78)
144 cd00046 DEXDc DEAD-like helica 99.7 4.7E-16 1E-20 135.7 16.6 143 173-324 1-144 (144)
145 KOG0953 Mitochondrial RNA heli 99.7 7.5E-16 1.6E-20 153.8 18.5 273 175-498 194-485 (700)
146 PF04851 ResIII: Type III rest 99.7 3.5E-16 7.7E-21 143.6 11.8 153 157-326 3-184 (184)
147 PRK11747 dinG ATP-dependent DN 99.7 8.2E-14 1.8E-18 152.3 31.9 132 367-502 520-689 (697)
148 PRK12901 secA preprotein trans 99.6 3.1E-14 6.7E-19 153.8 21.1 129 359-491 606-743 (1112)
149 KOG0391 SNF2 family DNA-depend 99.6 8.1E-14 1.8E-18 148.7 23.6 124 365-489 1260-1387(1958)
150 COG1199 DinG Rad3-related DNA 99.6 1.8E-13 3.8E-18 150.6 27.6 120 381-504 479-634 (654)
151 TIGR00604 rad3 DNA repair heli 99.6 6.1E-13 1.3E-17 146.6 30.6 143 367-519 507-695 (705)
152 KOG0388 SNF2 family DNA-depend 99.6 2.6E-14 5.7E-19 145.9 18.1 126 363-489 1026-1154(1185)
153 KOG0386 Chromatin remodeling c 99.6 6.8E-15 1.5E-19 155.9 13.7 326 156-497 393-844 (1157)
154 PF06862 DUF1253: Protein of u 99.6 2.7E-12 5.9E-17 129.8 29.5 290 209-501 36-427 (442)
155 smart00490 HELICc helicase sup 99.6 1.2E-14 2.6E-19 114.4 9.2 81 396-477 2-82 (82)
156 PRK14873 primosome assembly pr 99.5 2.3E-12 4.9E-17 138.7 26.9 280 178-490 166-540 (665)
157 KOG4439 RNA polymerase II tran 99.5 1.5E-13 3.3E-18 140.7 16.8 119 365-484 729-851 (901)
158 TIGR02562 cas3_yersinia CRISPR 99.5 1.9E-12 4E-17 140.9 23.6 320 147-478 398-881 (1110)
159 KOG2340 Uncharacterized conser 99.4 9.4E-12 2E-16 124.1 20.1 344 156-501 215-680 (698)
160 PF02399 Herpes_ori_bp: Origin 99.4 3.2E-11 6.9E-16 128.3 22.1 289 174-489 51-388 (824)
161 COG0553 HepA Superfamily II DN 99.4 2E-11 4.2E-16 139.4 21.2 120 365-485 692-816 (866)
162 KOG0921 Dosage compensation co 99.4 3.3E-12 7.2E-17 134.0 11.5 313 162-488 383-773 (1282)
163 PF00176 SNF2_N: SNF2 family N 99.3 2.9E-11 6.4E-16 120.0 13.9 156 161-324 1-172 (299)
164 PF07652 Flavi_DEAD: Flaviviru 99.3 1.5E-11 3.2E-16 104.3 9.8 136 171-328 3-140 (148)
165 KOG1015 Transcription regulato 99.3 7.7E-11 1.7E-15 124.3 16.1 121 365-485 1126-1271(1567)
166 COG0653 SecA Preprotein transl 99.3 2.8E-10 6E-15 122.0 19.4 310 163-490 84-546 (822)
167 COG0610 Type I site-specific r 99.2 1.7E-09 3.7E-14 121.7 24.6 314 173-505 274-667 (962)
168 smart00489 DEXDc3 DEAD-like he 99.2 2.3E-10 5E-15 112.2 14.7 73 157-233 8-84 (289)
169 smart00488 DEXDc2 DEAD-like he 99.2 2.3E-10 5E-15 112.2 14.7 73 157-233 8-84 (289)
170 PF07517 SecA_DEAD: SecA DEAD- 98.9 5.1E-08 1.1E-12 93.3 14.6 128 156-297 76-210 (266)
171 KOG0952 DNA/RNA helicase MER3/ 98.8 4.7E-10 1E-14 120.4 -2.2 261 156-434 926-1207(1230)
172 KOG1016 Predicted DNA helicase 98.8 1.3E-07 2.7E-12 98.7 14.6 110 378-487 716-845 (1387)
173 PRK15483 type III restriction- 98.7 2E-07 4.3E-12 102.7 14.2 73 432-504 501-583 (986)
174 COG3587 Restriction endonuclea 98.6 4.2E-06 9.2E-11 89.1 20.7 74 431-504 482-568 (985)
175 TIGR00596 rad1 DNA repair prot 98.5 2.9E-06 6.2E-11 93.5 18.1 66 259-324 6-72 (814)
176 PF13086 AAA_11: AAA domain; P 98.4 2.7E-06 5.8E-11 81.0 11.3 73 158-232 2-75 (236)
177 KOG1001 Helicase-like transcri 98.4 1.1E-06 2.5E-11 94.6 8.9 120 364-484 521-643 (674)
178 PF13872 AAA_34: P-loop contai 98.3 1.1E-05 2.4E-10 77.6 13.8 172 140-331 26-227 (303)
179 PF13307 Helicase_C_2: Helicas 98.3 2E-06 4.4E-11 77.4 7.2 105 381-489 9-150 (167)
180 PF02562 PhoH: PhoH-like prote 98.3 2.7E-06 5.8E-11 78.2 8.1 139 156-321 3-153 (205)
181 PF12340 DUF3638: Protein of u 98.2 1.5E-05 3.2E-10 74.0 11.4 151 136-298 4-186 (229)
182 PF13604 AAA_30: AAA domain; P 98.1 8.2E-06 1.8E-10 75.5 8.2 63 157-229 1-65 (196)
183 PF09848 DUF2075: Uncharacteri 98.1 1.4E-05 3E-10 81.3 10.1 108 174-311 3-117 (352)
184 KOG1802 RNA helicase nonsense 98.0 3.9E-05 8.4E-10 79.7 9.9 84 149-245 402-485 (935)
185 PRK10536 hypothetical protein; 98.0 0.00016 3.5E-09 68.5 13.2 140 154-320 56-208 (262)
186 KOG1803 DNA helicase [Replicat 97.9 3.4E-05 7.4E-10 79.7 7.9 63 157-229 185-248 (649)
187 COG3421 Uncharacterized protei 97.8 0.00012 2.5E-09 75.5 10.6 141 177-326 2-167 (812)
188 TIGR00376 DNA helicase, putati 97.8 0.00016 3.4E-09 78.8 12.2 67 156-232 156-223 (637)
189 KOG1132 Helicase of the DEAD s 97.8 0.00019 4.2E-09 77.2 12.1 139 157-298 21-261 (945)
190 PRK10875 recD exonuclease V su 97.8 0.00033 7.2E-09 75.5 13.7 139 159-321 154-299 (615)
191 PF13245 AAA_19: Part of AAA d 97.7 0.00018 3.8E-09 55.3 7.9 60 165-230 2-62 (76)
192 TIGR01447 recD exodeoxyribonuc 97.7 0.0006 1.3E-08 73.4 14.1 140 159-321 147-293 (586)
193 TIGR01448 recD_rel helicase, p 97.5 0.0011 2.4E-08 73.4 13.9 63 156-226 322-384 (720)
194 TIGR02768 TraA_Ti Ti-type conj 97.4 0.0018 3.9E-08 72.0 13.2 121 156-321 351-474 (744)
195 PRK08116 hypothetical protein; 97.4 0.0062 1.3E-07 59.2 15.3 46 283-329 177-226 (268)
196 PF00580 UvrD-helicase: UvrD/R 97.3 0.00075 1.6E-08 67.2 8.5 123 158-294 1-125 (315)
197 PRK13889 conjugal transfer rel 97.3 0.0023 4.9E-08 72.4 12.9 122 157-323 346-470 (988)
198 COG2805 PilT Tfp pilus assembl 97.3 0.00044 9.6E-09 66.0 5.6 52 129-199 100-151 (353)
199 TIGR02760 TraI_TIGR conjugativ 97.3 0.045 9.7E-07 67.2 23.8 237 157-432 429-686 (1960)
200 smart00492 HELICc3 helicase su 97.2 0.002 4.3E-08 56.0 9.0 78 411-488 26-137 (141)
201 cd00009 AAA The AAA+ (ATPases 97.2 0.0055 1.2E-07 53.0 12.1 17 172-188 19-35 (151)
202 PRK12723 flagellar biosynthesi 97.2 0.0079 1.7E-07 61.3 14.5 129 173-335 175-309 (388)
203 PF13401 AAA_22: AAA domain; P 97.2 0.0012 2.7E-08 56.4 7.5 19 172-190 4-22 (131)
204 PRK04296 thymidine kinase; Pro 97.1 0.0018 4E-08 59.5 8.3 37 172-218 2-38 (190)
205 smart00491 HELICc2 helicase su 97.1 0.0021 4.7E-08 55.9 8.1 73 416-488 28-138 (142)
206 PF13871 Helicase_C_4: Helicas 97.1 0.0025 5.3E-08 61.4 8.8 85 423-507 52-148 (278)
207 PF14617 CMS1: U3-containing 9 97.1 0.0015 3.3E-08 61.9 7.3 87 208-295 124-212 (252)
208 PHA02533 17 large terminase pr 97.1 0.0032 7E-08 67.0 10.5 149 157-324 59-210 (534)
209 KOG1805 DNA replication helica 97.0 0.0056 1.2E-07 66.9 11.4 146 131-298 647-810 (1100)
210 PRK14722 flhF flagellar biosyn 97.0 0.011 2.5E-07 59.7 12.6 131 171-335 136-269 (374)
211 PRK14974 cell division protein 96.9 0.011 2.4E-07 59.0 12.3 131 173-336 141-276 (336)
212 smart00382 AAA ATPases associa 96.9 0.0039 8.5E-08 53.4 8.2 18 172-189 2-19 (148)
213 KOG1131 RNA polymerase II tran 96.9 0.013 2.7E-07 59.9 12.5 74 154-233 13-90 (755)
214 PRK13826 Dtr system oriT relax 96.9 0.02 4.4E-07 65.4 15.2 123 156-323 380-505 (1102)
215 PF05970 PIF1: PIF1-like helic 96.9 0.0021 4.6E-08 65.5 6.9 59 158-226 2-66 (364)
216 PRK06526 transposase; Provisio 96.8 0.0082 1.8E-07 57.7 9.5 46 283-328 158-205 (254)
217 PF03354 Terminase_1: Phage Te 96.8 0.0044 9.6E-08 65.7 8.4 150 160-322 1-161 (477)
218 COG1875 NYN ribonuclease and A 96.8 0.0083 1.8E-07 59.0 9.4 138 153-321 224-385 (436)
219 KOG0298 DEAD box-containing he 96.7 0.0056 1.2E-07 68.7 9.1 156 171-330 373-556 (1394)
220 PRK07952 DNA replication prote 96.7 0.039 8.4E-07 52.7 13.8 48 282-329 160-210 (244)
221 PRK11889 flhF flagellar biosyn 96.7 0.036 7.7E-07 56.1 13.5 128 173-336 242-375 (436)
222 KOG0383 Predicted helicase [Ge 96.7 0.00013 2.9E-09 78.0 -3.8 79 365-445 615-696 (696)
223 PRK08181 transposase; Validate 96.7 0.033 7.2E-07 53.9 13.0 119 159-328 89-213 (269)
224 PRK08727 hypothetical protein; 96.5 0.023 5E-07 54.1 10.8 46 283-328 92-140 (233)
225 PRK06835 DNA replication prote 96.5 0.047 1E-06 54.6 13.2 47 282-328 244-293 (329)
226 PRK06893 DNA replication initi 96.4 0.012 2.6E-07 55.9 7.8 43 283-325 90-135 (229)
227 PRK11054 helD DNA helicase IV; 96.3 0.038 8.3E-07 60.8 12.0 71 156-234 195-265 (684)
228 PRK12377 putative replication 96.3 0.14 3E-06 49.1 14.3 47 282-328 161-210 (248)
229 PRK06921 hypothetical protein; 96.2 0.052 1.1E-06 52.6 11.5 45 171-225 116-160 (266)
230 PRK00149 dnaA chromosomal repl 96.2 0.067 1.4E-06 56.3 13.1 47 284-330 211-260 (450)
231 PRK14087 dnaA chromosomal repl 96.2 0.029 6.2E-07 58.8 10.3 46 283-328 205-253 (450)
232 PRK05703 flhF flagellar biosyn 96.2 0.1 2.2E-06 54.2 14.2 128 172-336 221-355 (424)
233 cd01120 RecA-like_NTPases RecA 96.2 0.041 8.8E-07 48.6 9.9 38 175-222 2-39 (165)
234 PRK05642 DNA replication initi 96.2 0.037 7.9E-07 52.7 9.9 42 284-325 97-140 (234)
235 PF00308 Bac_DnaA: Bacterial d 96.1 0.028 6.1E-07 52.9 8.8 46 283-328 96-144 (219)
236 PRK08084 DNA replication initi 96.1 0.032 6.9E-07 53.2 9.2 43 285-327 98-144 (235)
237 cd01122 GP4d_helicase GP4d_hel 96.1 0.034 7.4E-07 54.2 9.4 118 169-298 27-154 (271)
238 COG2256 MGS1 ATPase related to 96.0 0.022 4.7E-07 56.9 7.8 35 286-324 106-140 (436)
239 TIGR01547 phage_term_2 phage t 96.0 0.021 4.6E-07 59.1 8.2 134 174-326 3-142 (396)
240 PRK14712 conjugal transfer nic 96.0 0.055 1.2E-06 64.1 12.2 64 157-226 835-900 (1623)
241 COG1419 FlhF Flagellar GTP-bin 96.0 0.02 4.4E-07 57.6 7.5 131 171-335 202-335 (407)
242 PF00448 SRP54: SRP54-type pro 96.0 0.031 6.7E-07 51.6 8.2 50 283-332 82-133 (196)
243 PF13173 AAA_14: AAA domain 96.0 0.13 2.9E-06 43.8 11.5 39 284-324 61-99 (128)
244 cd01124 KaiC KaiC is a circadi 96.0 0.048 1E-06 49.7 9.4 48 175-233 2-49 (187)
245 PHA03333 putative ATPase subun 95.9 0.083 1.8E-06 56.8 11.8 150 157-324 169-332 (752)
246 TIGR00362 DnaA chromosomal rep 95.9 0.1 2.2E-06 54.2 12.5 46 285-330 200-248 (405)
247 PRK05580 primosome assembly pr 95.9 0.055 1.2E-06 59.8 11.0 93 365-458 174-266 (679)
248 COG1219 ClpX ATP-dependent pro 95.8 0.0059 1.3E-07 58.9 2.8 28 170-199 95-122 (408)
249 PRK12422 chromosomal replicati 95.8 0.062 1.3E-06 56.2 10.6 51 284-334 202-255 (445)
250 TIGR00595 priA primosomal prot 95.8 0.05 1.1E-06 57.9 9.9 93 365-458 9-101 (505)
251 PRK14873 primosome assembly pr 95.7 0.066 1.4E-06 58.6 10.6 94 364-458 171-265 (665)
252 PRK05707 DNA polymerase III su 95.7 0.087 1.9E-06 52.7 10.6 34 158-191 4-41 (328)
253 TIGR01075 uvrD DNA helicase II 95.7 0.054 1.2E-06 60.6 10.1 72 156-235 3-74 (715)
254 COG1484 DnaC DNA replication p 95.7 0.066 1.4E-06 51.6 9.3 49 171-230 104-152 (254)
255 TIGR03420 DnaA_homol_Hda DnaA 95.6 0.072 1.6E-06 50.3 9.5 19 171-189 37-55 (226)
256 KOG0989 Replication factor C, 95.6 0.032 6.9E-07 53.8 6.8 44 280-324 125-169 (346)
257 COG4626 Phage terminase-like p 95.6 0.072 1.6E-06 55.6 9.9 147 157-323 61-224 (546)
258 PRK10919 ATP-dependent DNA hel 95.6 0.039 8.4E-07 61.0 8.3 70 157-234 2-71 (672)
259 PRK08903 DnaA regulatory inact 95.6 0.082 1.8E-06 50.0 9.5 42 284-326 90-133 (227)
260 TIGR02881 spore_V_K stage V sp 95.5 0.11 2.5E-06 50.2 10.6 18 173-190 43-60 (261)
261 PRK08769 DNA polymerase III su 95.5 0.19 4.1E-06 50.0 12.0 37 155-191 2-45 (319)
262 PRK11773 uvrD DNA-dependent he 95.5 0.072 1.6E-06 59.6 10.2 72 156-235 8-79 (721)
263 PRK14088 dnaA chromosomal repl 95.4 0.2 4.4E-06 52.4 12.7 50 284-333 194-246 (440)
264 TIGR02785 addA_Gpos recombinat 95.4 0.097 2.1E-06 61.9 11.3 122 158-295 2-126 (1232)
265 PRK13833 conjugal transfer pro 95.4 0.062 1.4E-06 53.4 8.3 63 150-222 123-186 (323)
266 PRK06995 flhF flagellar biosyn 95.4 0.57 1.2E-05 49.2 15.5 22 172-193 256-277 (484)
267 PF00004 AAA: ATPase family as 95.3 0.038 8.3E-07 46.9 5.9 15 175-189 1-15 (132)
268 COG3973 Superfamily I DNA and 95.3 0.099 2.1E-06 54.9 9.6 91 141-235 188-285 (747)
269 COG0593 DnaA ATPase involved i 95.3 0.093 2E-06 53.5 9.3 46 284-329 175-223 (408)
270 PTZ00112 origin recognition co 95.3 0.29 6.4E-06 54.3 13.4 28 283-311 868-895 (1164)
271 PRK13709 conjugal transfer nic 95.2 0.16 3.5E-06 61.1 12.3 64 156-225 966-1031(1747)
272 PLN03025 replication factor C 95.2 0.25 5.5E-06 49.4 12.1 39 284-323 99-137 (319)
273 PHA03368 DNA packaging termina 95.2 0.13 2.9E-06 55.0 10.2 134 171-324 253-390 (738)
274 PRK11823 DNA repair protein Ra 95.1 0.25 5.4E-06 51.8 12.2 53 171-234 79-131 (446)
275 TIGR01074 rep ATP-dependent DN 95.1 0.088 1.9E-06 58.4 9.4 69 158-234 2-70 (664)
276 KOG1133 Helicase of the DEAD s 95.1 1.5 3.2E-05 47.1 17.3 124 362-489 609-780 (821)
277 PRK00771 signal recognition pa 95.1 0.34 7.4E-06 50.4 12.8 21 173-193 96-116 (437)
278 COG1435 Tdk Thymidine kinase [ 95.1 0.3 6.4E-06 44.2 10.6 89 174-296 6-94 (201)
279 PRK06731 flhF flagellar biosyn 95.1 0.53 1.1E-05 45.6 13.3 130 171-336 74-209 (270)
280 PRK14956 DNA polymerase III su 95.0 0.22 4.8E-06 52.0 11.2 18 175-192 43-60 (484)
281 COG4962 CpaF Flp pilus assembl 95.0 0.043 9.3E-07 54.0 5.7 61 154-225 154-215 (355)
282 PRK11331 5-methylcytosine-spec 95.0 0.068 1.5E-06 55.1 7.4 33 158-190 180-212 (459)
283 KOG0742 AAA+-type ATPase [Post 95.0 0.055 1.2E-06 54.0 6.4 99 173-324 385-493 (630)
284 TIGR02760 TraI_TIGR conjugativ 95.0 0.12 2.5E-06 63.7 10.5 62 156-226 1018-1084(1960)
285 PF05496 RuvB_N: Holliday junc 95.0 0.13 2.8E-06 47.9 8.4 16 174-189 52-67 (233)
286 COG1198 PriA Primosomal protei 95.0 0.096 2.1E-06 57.4 8.8 98 358-456 222-319 (730)
287 COG1444 Predicted P-loop ATPas 95.0 0.17 3.8E-06 55.2 10.6 147 149-324 206-356 (758)
288 PRK13342 recombination factor 94.9 0.17 3.7E-06 52.6 10.3 38 284-325 92-129 (413)
289 PRK10917 ATP-dependent DNA hel 94.9 0.12 2.7E-06 57.2 9.7 77 380-456 309-389 (681)
290 PF05127 Helicase_RecD: Helica 94.9 0.01 2.2E-07 53.3 1.0 123 176-324 1-123 (177)
291 PRK12402 replication factor C 94.9 0.34 7.4E-06 48.7 12.3 40 283-323 124-163 (337)
292 PRK09183 transposase/IS protei 94.9 0.15 3.3E-06 49.3 9.1 22 169-190 99-120 (259)
293 KOG0701 dsRNA-specific nucleas 94.8 0.022 4.7E-07 66.7 3.6 95 383-477 294-399 (1606)
294 PHA02544 44 clamp loader, smal 94.8 0.16 3.5E-06 50.7 9.5 40 284-323 100-139 (316)
295 PRK14086 dnaA chromosomal repl 94.8 0.12 2.5E-06 55.6 8.7 47 283-329 376-425 (617)
296 KOG0991 Replication factor C, 94.8 0.076 1.7E-06 49.1 6.2 19 173-191 49-67 (333)
297 PRK13894 conjugal transfer ATP 94.7 0.12 2.5E-06 51.6 7.9 65 148-222 125-190 (319)
298 PRK14723 flhF flagellar biosyn 94.7 0.18 3.8E-06 55.7 9.8 22 172-193 185-206 (767)
299 PRK07994 DNA polymerase III su 94.7 0.42 9.1E-06 52.1 12.6 40 283-323 118-157 (647)
300 PRK12724 flagellar biosynthesi 94.7 0.72 1.6E-05 47.4 13.6 124 174-335 225-356 (432)
301 PRK14960 DNA polymerase III su 94.6 0.088 1.9E-06 56.8 7.3 40 283-323 117-156 (702)
302 PRK14964 DNA polymerase III su 94.6 0.19 4.1E-06 52.9 9.6 42 283-325 115-156 (491)
303 PRK06645 DNA polymerase III su 94.6 0.45 9.7E-06 50.5 12.5 19 174-192 45-63 (507)
304 PTZ00293 thymidine kinase; Pro 94.6 0.28 6E-06 45.5 9.6 38 172-219 4-41 (211)
305 TIGR01073 pcrA ATP-dependent D 94.6 0.19 4.1E-06 56.4 10.2 72 156-235 3-74 (726)
306 PRK07764 DNA polymerase III su 94.6 0.2 4.4E-06 56.2 10.3 43 283-326 119-161 (824)
307 PF05876 Terminase_GpA: Phage 94.5 0.055 1.2E-06 58.3 5.6 124 157-297 16-147 (557)
308 COG1474 CDC6 Cdc6-related prot 94.5 1 2.2E-05 45.8 14.4 29 283-312 122-150 (366)
309 TIGR02782 TrbB_P P-type conjug 94.5 0.19 4.1E-06 49.7 8.9 65 148-222 109-174 (299)
310 PF03969 AFG1_ATPase: AFG1-lik 94.5 1 2.2E-05 45.8 14.2 44 284-328 127-172 (362)
311 PRK06904 replicative DNA helic 94.5 0.55 1.2E-05 49.6 12.8 118 169-298 218-348 (472)
312 PRK13341 recombination factor 94.5 0.21 4.6E-06 55.3 10.1 41 284-328 109-149 (725)
313 PRK00411 cdc6 cell division co 94.5 0.24 5.3E-06 51.1 10.1 17 172-188 55-71 (394)
314 PF13177 DNA_pol3_delta2: DNA 94.5 0.29 6.3E-06 43.6 9.2 43 283-326 101-143 (162)
315 PRK12727 flagellar biosynthesi 94.5 0.37 7.9E-06 50.9 11.1 129 171-335 349-481 (559)
316 CHL00181 cbbX CbbX; Provisiona 94.4 0.39 8.4E-06 47.2 10.9 20 172-191 59-78 (287)
317 TIGR00064 ftsY signal recognit 94.4 0.46 1E-05 46.3 11.2 54 283-336 153-214 (272)
318 TIGR02524 dot_icm_DotB Dot/Icm 94.4 0.1 2.2E-06 52.9 6.9 26 171-197 133-158 (358)
319 PF04438 zf-HIT: HIT zinc fing 94.4 0.014 3.1E-07 35.6 0.5 28 36-63 2-29 (30)
320 KOG0733 Nuclear AAA ATPase (VC 94.3 0.3 6.4E-06 51.6 10.0 54 132-188 505-561 (802)
321 PRK07003 DNA polymerase III su 94.3 0.27 5.9E-06 53.8 10.1 42 283-325 118-159 (830)
322 PRK08533 flagellar accessory p 94.3 0.66 1.4E-05 44.0 11.8 52 171-233 23-74 (230)
323 PF05621 TniB: Bacterial TniB 94.3 0.14 3.1E-06 49.8 7.2 51 173-228 62-114 (302)
324 TIGR03499 FlhF flagellar biosy 94.2 0.1 2.3E-06 51.1 6.4 20 172-191 194-213 (282)
325 PRK05342 clpX ATP-dependent pr 94.2 0.13 2.9E-06 53.0 7.4 20 171-190 107-126 (412)
326 TIGR03600 phage_DnaB phage rep 94.2 0.56 1.2E-05 48.9 12.2 125 162-298 184-319 (421)
327 TIGR02928 orc1/cdc6 family rep 94.2 0.21 4.7E-06 50.9 9.0 24 173-197 41-64 (365)
328 PRK12726 flagellar biosynthesi 94.2 0.32 7E-06 49.1 9.7 22 172-193 206-227 (407)
329 cd01121 Sms Sms (bacterial rad 94.2 0.7 1.5E-05 47.1 12.4 91 171-297 81-171 (372)
330 TIGR03015 pepcterm_ATPase puta 94.1 0.24 5.2E-06 48.0 8.7 33 157-189 23-60 (269)
331 cd00984 DnaB_C DnaB helicase C 94.1 0.48 1E-05 45.1 10.6 39 170-217 11-49 (242)
332 PRK14962 DNA polymerase III su 94.0 0.33 7.2E-06 51.1 10.0 17 175-191 39-55 (472)
333 PF03796 DnaB_C: DnaB-like hel 94.0 0.33 7.1E-06 47.0 9.3 113 171-298 18-144 (259)
334 PF01695 IstB_IS21: IstB-like 94.0 0.15 3.2E-06 46.3 6.4 46 170-226 45-90 (178)
335 TIGR01425 SRP54_euk signal rec 94.0 1.3 2.8E-05 45.8 13.8 59 174-245 102-162 (429)
336 PRK14959 DNA polymerase III su 93.9 0.25 5.5E-06 53.3 9.0 20 174-193 40-59 (624)
337 TIGR00643 recG ATP-dependent D 93.9 0.26 5.6E-06 54.3 9.4 77 380-456 283-363 (630)
338 PRK14955 DNA polymerase III su 93.8 0.4 8.7E-06 49.5 10.1 41 282-323 125-165 (397)
339 PRK14958 DNA polymerase III su 93.8 0.2 4.3E-06 53.4 8.0 40 283-323 118-157 (509)
340 PRK14961 DNA polymerase III su 93.8 0.24 5.3E-06 50.5 8.4 40 283-323 118-157 (363)
341 PRK07940 DNA polymerase III su 93.7 0.51 1.1E-05 48.5 10.5 45 283-328 116-160 (394)
342 PRK06964 DNA polymerase III su 93.7 0.6 1.3E-05 46.9 10.7 35 158-192 2-41 (342)
343 COG2804 PulE Type II secretory 93.7 0.11 2.4E-06 53.8 5.5 39 159-198 243-283 (500)
344 cd00561 CobA_CobO_BtuR ATP:cor 93.6 0.94 2E-05 40.1 10.6 52 282-333 93-147 (159)
345 TIGR02880 cbbX_cfxQ probable R 93.6 0.78 1.7E-05 45.0 11.3 19 172-190 58-76 (284)
346 PRK14949 DNA polymerase III su 93.6 0.37 8E-06 53.9 9.7 43 283-326 118-160 (944)
347 PRK06620 hypothetical protein; 93.6 0.15 3.2E-06 47.8 5.9 16 173-188 45-60 (214)
348 PRK08699 DNA polymerase III su 93.6 0.84 1.8E-05 45.7 11.5 35 158-192 2-41 (325)
349 PRK13851 type IV secretion sys 93.5 0.11 2.5E-06 52.1 5.3 44 168-222 158-201 (344)
350 PRK05563 DNA polymerase III su 93.5 0.23 4.9E-06 53.6 7.9 43 282-325 117-159 (559)
351 PRK13900 type IV secretion sys 93.5 0.24 5.1E-06 49.7 7.5 43 169-222 157-199 (332)
352 PHA00729 NTP-binding motif con 93.5 0.74 1.6E-05 43.2 10.2 17 174-190 19-35 (226)
353 PRK09111 DNA polymerase III su 93.4 0.59 1.3E-05 50.7 10.8 41 282-323 130-170 (598)
354 PRK08691 DNA polymerase III su 93.4 0.48 1.1E-05 51.6 10.1 40 283-323 118-157 (709)
355 TIGR02525 plasmid_TraJ plasmid 93.4 0.13 2.9E-06 52.2 5.6 47 133-198 128-174 (372)
356 TIGR03881 KaiC_arch_4 KaiC dom 93.4 0.92 2E-05 42.8 11.2 52 171-233 19-70 (229)
357 PRK12323 DNA polymerase III su 93.4 0.7 1.5E-05 50.0 11.1 39 282-321 122-161 (700)
358 PF03237 Terminase_6: Terminas 93.4 0.94 2E-05 45.9 12.1 140 176-336 1-151 (384)
359 PRK05973 replicative DNA helic 93.4 0.19 4.1E-06 47.7 6.2 65 157-233 50-114 (237)
360 PRK07004 replicative DNA helic 93.4 0.49 1.1E-05 49.8 9.9 112 171-297 212-337 (460)
361 PRK05896 DNA polymerase III su 93.3 0.5 1.1E-05 50.9 9.9 43 283-326 118-160 (605)
362 KOG0739 AAA+-type ATPase [Post 93.3 3.1 6.7E-05 40.3 14.0 97 114-233 112-213 (439)
363 PRK08006 replicative DNA helic 93.3 1 2.2E-05 47.5 12.2 115 171-297 223-349 (471)
364 KOG2028 ATPase related to the 93.3 0.35 7.6E-06 47.8 7.9 37 284-324 222-258 (554)
365 PRK14963 DNA polymerase III su 93.3 0.45 9.9E-06 50.6 9.5 17 175-191 39-55 (504)
366 KOG1513 Nuclear helicase MOP-3 93.2 0.13 2.9E-06 55.3 5.3 82 425-506 850-943 (1300)
367 TIGR00665 DnaB replicative DNA 93.2 0.87 1.9E-05 47.7 11.6 113 171-297 194-318 (434)
368 PRK04195 replication factor C 93.2 0.66 1.4E-05 49.3 10.8 18 172-189 39-56 (482)
369 PRK14721 flhF flagellar biosyn 93.2 0.28 6.1E-06 50.6 7.5 159 172-377 191-352 (420)
370 PRK05986 cob(I)alamin adenolsy 93.1 0.78 1.7E-05 41.8 9.5 145 170-333 20-167 (191)
371 PRK05748 replicative DNA helic 93.1 0.9 2E-05 47.8 11.5 114 171-297 202-327 (448)
372 PRK08939 primosomal protein Dn 93.1 1.2 2.7E-05 44.1 11.7 49 282-330 215-267 (306)
373 TIGR01420 pilT_fam pilus retra 93.0 0.27 5.9E-06 49.7 7.2 43 171-222 121-163 (343)
374 PRK06067 flagellar accessory p 93.0 1.1 2.4E-05 42.5 11.1 52 171-233 24-75 (234)
375 PRK14965 DNA polymerase III su 93.0 0.99 2.2E-05 49.0 11.8 41 282-323 117-157 (576)
376 PRK08840 replicative DNA helic 93.0 1.3 2.9E-05 46.6 12.4 36 155-190 200-235 (464)
377 PRK14957 DNA polymerase III su 93.0 0.52 1.1E-05 50.4 9.4 40 283-323 118-157 (546)
378 COG0470 HolB ATPase involved i 92.9 0.53 1.2E-05 47.0 9.2 41 282-323 107-147 (325)
379 TIGR02639 ClpA ATP-dependent C 92.9 2.2 4.7E-05 47.9 14.7 21 172-192 203-223 (731)
380 PRK14950 DNA polymerase III su 92.9 0.99 2.2E-05 49.2 11.7 41 282-323 118-158 (585)
381 COG1132 MdlB ABC-type multidru 92.9 0.17 3.6E-06 55.1 5.8 31 282-312 481-511 (567)
382 cd01125 repA Hexameric Replica 92.8 1 2.2E-05 43.0 10.4 55 174-228 3-62 (239)
383 PRK06090 DNA polymerase III su 92.8 0.92 2E-05 45.1 10.3 35 157-191 3-44 (319)
384 TIGR00580 mfd transcription-re 92.7 0.52 1.1E-05 53.8 9.5 76 381-456 500-579 (926)
385 PRK14952 DNA polymerase III su 92.7 0.6 1.3E-05 50.4 9.6 41 283-324 117-157 (584)
386 PRK00440 rfc replication facto 92.7 1.4 3E-05 43.9 11.8 36 284-320 102-138 (319)
387 COG2255 RuvB Holliday junction 92.7 0.43 9.4E-06 45.7 7.4 40 267-311 90-129 (332)
388 PRK14954 DNA polymerase III su 92.7 0.72 1.6E-05 50.2 10.1 41 282-323 125-165 (620)
389 TIGR00959 ffh signal recogniti 92.6 2.5 5.5E-05 43.9 13.7 21 174-194 101-121 (428)
390 PRK06871 DNA polymerase III su 92.6 0.66 1.4E-05 46.3 9.1 35 158-192 3-44 (325)
391 PRK10867 signal recognition pa 92.6 1.9 4.2E-05 44.7 12.8 20 174-193 102-121 (433)
392 PRK09112 DNA polymerase III su 92.5 1.4 3E-05 44.6 11.4 39 282-321 139-178 (351)
393 PRK10436 hypothetical protein; 92.4 0.2 4.4E-06 52.4 5.5 37 160-197 204-242 (462)
394 KOG1513 Nuclear helicase MOP-3 92.4 0.12 2.6E-06 55.7 3.6 154 156-324 263-454 (1300)
395 COG0552 FtsY Signal recognitio 92.3 2 4.3E-05 42.4 11.6 127 175-335 142-280 (340)
396 PRK14951 DNA polymerase III su 92.3 0.75 1.6E-05 50.0 9.6 42 283-325 123-164 (618)
397 TIGR03877 thermo_KaiC_1 KaiC d 92.2 0.27 5.8E-06 46.9 5.6 53 171-234 20-72 (237)
398 PF01443 Viral_helicase1: Vira 92.2 0.16 3.4E-06 48.2 4.0 14 175-188 1-14 (234)
399 PF01637 Arch_ATPase: Archaeal 92.2 0.24 5.2E-06 46.6 5.3 56 265-324 103-165 (234)
400 TIGR00708 cobA cob(I)alamin ad 92.2 1 2.2E-05 40.4 8.8 51 283-333 96-149 (173)
401 KOG1133 Helicase of the DEAD s 92.1 0.23 5E-06 52.9 5.3 43 157-199 15-61 (821)
402 PRK08506 replicative DNA helic 92.1 1.3 2.9E-05 46.8 11.0 113 171-297 191-315 (472)
403 COG5008 PilU Tfp pilus assembl 92.0 0.14 3E-06 48.4 3.1 37 133-188 106-143 (375)
404 cd01130 VirB11-like_ATPase Typ 92.0 0.42 9.1E-06 43.7 6.4 32 157-188 9-41 (186)
405 PRK13764 ATPase; Provisional 91.9 0.36 7.8E-06 52.0 6.7 26 171-197 256-281 (602)
406 PRK11034 clpA ATP-dependent Cl 91.9 1.9 4.2E-05 48.1 12.5 20 172-191 207-226 (758)
407 PRK14969 DNA polymerase III su 91.8 0.55 1.2E-05 50.3 8.0 29 283-312 118-146 (527)
408 PRK08760 replicative DNA helic 91.8 1.7 3.6E-05 46.1 11.4 114 171-297 228-352 (476)
409 PRK10416 signal recognition pa 91.7 5.3 0.00012 39.8 14.3 53 283-335 195-255 (318)
410 cd01126 TraG_VirD4 The TraG/Tr 91.7 0.18 4E-06 51.8 4.2 47 174-232 1-47 (384)
411 PRK06647 DNA polymerase III su 91.7 1 2.3E-05 48.5 9.9 41 282-323 117-157 (563)
412 COG1618 Predicted nucleotide k 91.7 0.17 3.8E-06 44.2 3.2 117 173-311 6-129 (179)
413 PRK07993 DNA polymerase III su 91.6 0.76 1.6E-05 46.2 8.2 34 158-191 3-43 (334)
414 TIGR00678 holB DNA polymerase 91.6 1.6 3.4E-05 39.9 9.8 40 282-322 94-133 (188)
415 PRK05595 replicative DNA helic 91.5 0.82 1.8E-05 48.0 8.7 39 171-218 200-238 (444)
416 KOG0741 AAA+-type ATPase [Post 91.4 2.8 6.1E-05 43.8 11.9 69 140-220 494-574 (744)
417 PF02534 T4SS-DNA_transf: Type 91.3 0.24 5.2E-06 52.5 4.6 49 173-233 45-93 (469)
418 PF05729 NACHT: NACHT domain 91.2 2.1 4.6E-05 37.6 10.1 24 174-198 2-25 (166)
419 PRK06321 replicative DNA helic 91.2 2.2 4.7E-05 45.1 11.5 113 171-297 225-349 (472)
420 PRK14948 DNA polymerase III su 91.2 1 2.2E-05 49.2 9.3 20 173-192 39-58 (620)
421 PRK10689 transcription-repair 91.2 1 2.2E-05 52.8 9.8 77 380-456 648-728 (1147)
422 PRK07399 DNA polymerase III su 91.1 2.4 5.2E-05 42.2 11.1 58 263-322 104-161 (314)
423 COG1110 Reverse gyrase [DNA re 91.1 0.49 1.1E-05 52.8 6.6 92 380-471 124-230 (1187)
424 TIGR02538 type_IV_pilB type IV 91.0 0.34 7.3E-06 52.5 5.4 38 159-197 301-340 (564)
425 cd01129 PulE-GspE PulE/GspE Th 91.0 0.52 1.1E-05 45.7 6.3 37 160-197 66-104 (264)
426 PRK07471 DNA polymerase III su 91.0 3.5 7.6E-05 42.0 12.5 60 262-323 120-179 (365)
427 PHA03372 DNA packaging termina 91.0 2.2 4.9E-05 45.5 11.0 127 172-324 202-337 (668)
428 TIGR02868 CydC thiol reductant 90.9 0.3 6.6E-06 52.6 5.0 17 171-187 360-376 (529)
429 COG1222 RPT1 ATP-dependent 26S 90.9 2.4 5.2E-05 42.2 10.5 17 172-188 185-201 (406)
430 PRK09376 rho transcription ter 90.9 0.98 2.1E-05 45.9 8.1 28 161-188 155-185 (416)
431 PF02572 CobA_CobO_BtuR: ATP:c 90.9 4.9 0.00011 36.0 11.7 140 175-333 6-148 (172)
432 PRK09087 hypothetical protein; 90.8 1.1 2.4E-05 42.4 8.1 40 287-328 90-131 (226)
433 KOG1806 DEAD box containing he 90.8 0.45 9.7E-06 52.9 5.9 74 152-233 733-806 (1320)
434 COG2109 BtuR ATP:corrinoid ade 90.7 3.3 7.1E-05 37.4 10.3 140 175-333 31-174 (198)
435 TIGR03819 heli_sec_ATPase heli 90.6 0.72 1.6E-05 46.4 7.1 63 147-222 154-217 (340)
436 KOG0730 AAA+-type ATPase [Post 90.6 1.1 2.5E-05 47.8 8.6 58 129-189 425-485 (693)
437 COG0513 SrmB Superfamily II DN 90.6 3.5 7.6E-05 44.2 12.6 69 384-456 102-180 (513)
438 PRK10865 protein disaggregatio 90.6 2.5 5.5E-05 48.2 12.0 20 172-191 199-218 (857)
439 PRK13897 type IV secretion sys 90.5 0.37 7.9E-06 52.2 5.0 49 173-233 159-207 (606)
440 TIGR00416 sms DNA repair prote 90.5 2.6 5.5E-05 44.3 11.2 91 171-297 93-183 (454)
441 TIGR00767 rho transcription te 90.4 1.6 3.4E-05 44.6 9.2 18 171-188 167-184 (415)
442 cd03115 SRP The signal recogni 90.4 13 0.00027 33.2 15.2 17 175-191 3-19 (173)
443 PRK09165 replicative DNA helic 90.3 2.3 5.1E-05 45.2 10.9 123 171-297 216-354 (497)
444 PF06733 DEAD_2: DEAD_2; Inte 90.3 0.12 2.6E-06 46.6 1.1 43 256-298 115-159 (174)
445 TIGR00763 lon ATP-dependent pr 90.3 1.2 2.5E-05 50.4 9.0 18 172-189 347-364 (775)
446 cd01131 PilT Pilus retraction 90.3 0.45 9.7E-06 44.0 4.9 22 175-197 4-25 (198)
447 CHL00095 clpC Clp protease ATP 90.1 2.6 5.7E-05 47.9 11.8 23 171-193 199-221 (821)
448 PF13555 AAA_29: P-loop contai 90.1 0.41 8.8E-06 34.9 3.5 24 172-197 23-46 (62)
449 PF10593 Z1: Z1 domain; Inter 90.1 1.2 2.6E-05 42.4 7.7 71 433-503 136-207 (239)
450 PRK14953 DNA polymerase III su 90.1 1.6 3.4E-05 46.3 9.3 41 282-323 117-157 (486)
451 KOG0737 AAA+-type ATPase [Post 90.1 0.82 1.8E-05 45.5 6.6 52 135-189 89-144 (386)
452 TIGR03345 VI_ClpV1 type VI sec 89.9 3.6 7.7E-05 46.9 12.5 30 162-191 192-227 (852)
453 PRK14971 DNA polymerase III su 89.9 2.6 5.7E-05 46.0 11.1 41 282-323 119-159 (614)
454 COG0630 VirB11 Type IV secreto 89.8 0.63 1.4E-05 46.3 5.8 57 155-222 125-182 (312)
455 cd01393 recA_like RecA is a b 89.8 1.3 2.9E-05 41.6 7.8 46 171-220 18-63 (226)
456 PRK04328 hypothetical protein; 89.6 0.7 1.5E-05 44.4 5.8 53 171-234 22-74 (249)
457 TIGR03346 chaperone_ClpB ATP-d 89.6 3.4 7.5E-05 47.2 12.2 20 172-191 194-213 (852)
458 COG2909 MalT ATP-dependent tra 89.5 1.4 3.1E-05 48.5 8.4 38 286-323 131-169 (894)
459 PF00098 zf-CCHC: Zinc knuckle 89.5 0.15 3.2E-06 27.1 0.6 13 37-49 1-13 (18)
460 PRK08451 DNA polymerase III su 89.5 2.3 5E-05 45.4 10.0 41 282-323 115-155 (535)
461 PF06745 KaiC: KaiC; InterPro 89.4 0.56 1.2E-05 44.3 4.9 53 171-233 18-70 (226)
462 KOG0344 ATP-dependent RNA heli 89.4 5.5 0.00012 42.0 12.2 99 180-295 365-467 (593)
463 PF13696 zf-CCHC_2: Zinc knuck 89.4 0.27 5.9E-06 30.3 1.7 19 31-49 3-21 (32)
464 PF12846 AAA_10: AAA-like doma 89.2 0.63 1.4E-05 45.7 5.4 43 172-224 1-43 (304)
465 TIGR02640 gas_vesic_GvpN gas v 89.2 0.6 1.3E-05 45.3 5.0 27 164-190 13-39 (262)
466 PRK07133 DNA polymerase III su 89.2 2 4.3E-05 47.4 9.4 43 283-326 117-159 (725)
467 COG1485 Predicted ATPase [Gene 89.2 11 0.00024 37.6 13.6 108 173-328 66-175 (367)
468 COG3267 ExeA Type II secretory 89.1 2.1 4.5E-05 40.6 8.2 21 170-190 48-69 (269)
469 PRK03992 proteasome-activating 89.0 1.7 3.8E-05 44.7 8.5 18 172-189 165-182 (389)
470 cd00983 recA RecA is a bacter 89.0 1.2 2.6E-05 44.3 7.0 43 171-223 54-96 (325)
471 KOG0058 Peptide exporter, ABC 89.0 0.79 1.7E-05 49.6 6.0 41 282-322 620-660 (716)
472 PRK04841 transcriptional regul 89.0 4.9 0.00011 46.4 13.2 41 285-325 122-163 (903)
473 PRK09354 recA recombinase A; P 89.0 1.4 3E-05 44.3 7.4 43 171-223 59-101 (349)
474 KOG0734 AAA+-type ATPase conta 88.9 3.4 7.4E-05 43.3 10.1 41 285-325 397-448 (752)
475 PF00437 T2SE: Type II/IV secr 88.8 0.5 1.1E-05 46.0 4.2 43 170-222 125-167 (270)
476 CHL00176 ftsH cell division pr 88.7 1.3 2.9E-05 48.4 7.7 18 172-189 216-233 (638)
477 PRK09435 membrane ATPase/prote 88.6 9.9 0.00021 38.1 13.2 14 175-188 59-72 (332)
478 KOG0738 AAA+-type ATPase [Post 88.5 3.8 8.3E-05 41.2 9.9 16 173-188 246-261 (491)
479 PRK06305 DNA polymerase III su 88.5 3 6.4E-05 43.9 9.9 19 174-192 41-59 (451)
480 PHA00012 I assembly protein 88.5 6.2 0.00013 39.0 11.2 23 175-197 4-26 (361)
481 cd01128 rho_factor Transcripti 88.4 1.7 3.6E-05 41.7 7.3 18 170-187 14-31 (249)
482 COG4068 Uncharacterized protei 88.2 0.26 5.7E-06 34.5 1.2 24 38-66 10-33 (64)
483 PRK13850 type IV secretion sys 88.1 0.75 1.6E-05 50.5 5.4 48 173-232 140-187 (670)
484 COG4178 ABC-type uncharacteriz 88.0 2.9 6.2E-05 45.0 9.4 39 282-320 531-570 (604)
485 TIGR01243 CDC48 AAA family ATP 88.0 2 4.4E-05 48.3 8.9 54 133-189 448-504 (733)
486 TIGR03878 thermo_KaiC_2 KaiC d 88.0 1.5 3.2E-05 42.4 6.8 38 171-218 35-72 (259)
487 PF13481 AAA_25: AAA domain; P 87.9 1.6 3.4E-05 39.9 6.8 63 171-235 31-94 (193)
488 COG2874 FlaH Predicted ATPases 87.8 17 0.00038 33.6 13.0 145 174-343 30-189 (235)
489 TIGR02533 type_II_gspE general 87.8 0.66 1.4E-05 49.1 4.6 38 159-197 227-266 (486)
490 cd03221 ABCF_EF-3 ABCF_EF-3 E 87.8 3.2 6.8E-05 36.1 8.3 38 283-322 87-124 (144)
491 KOG2036 Predicted P-loop ATPas 87.7 9.4 0.0002 41.3 12.6 134 159-325 255-412 (1011)
492 TIGR02788 VirB11 P-type DNA tr 87.7 0.93 2E-05 45.1 5.4 19 170-188 142-160 (308)
493 PRK10787 DNA-binding ATP-depen 87.6 5.7 0.00012 44.8 12.0 31 266-299 401-431 (784)
494 PRK07413 hypothetical protein; 87.6 4.3 9.4E-05 41.1 10.0 206 109-334 143-359 (382)
495 PF10412 TrwB_AAD_bind: Type I 87.6 0.72 1.6E-05 47.4 4.6 45 170-224 13-57 (386)
496 COG3972 Superfamily I DNA and 87.5 1.2 2.7E-05 45.8 6.0 132 157-297 162-308 (660)
497 PRK13695 putative NTPase; Prov 87.3 4.6 0.0001 36.2 9.3 17 174-190 2-18 (174)
498 cd03239 ABC_SMC_head The struc 87.2 0.78 1.7E-05 41.6 4.1 40 283-322 115-156 (178)
499 KOG2228 Origin recognition com 87.2 8.8 0.00019 38.0 11.3 55 270-324 123-181 (408)
500 PRK07414 cob(I)yrinic acid a,c 87.2 4.6 9.9E-05 36.3 8.9 134 175-333 24-167 (178)
No 1
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=8e-104 Score=834.48 Aligned_cols=503 Identities=74% Similarity=1.173 Sum_probs=465.7
Q ss_pred cCCCCCCCCCCccccchhhhcccCCCCCeeeeecccccccccCcCCcccchHHhHHHHhhhhhccCCCccCCCCCCCCCC
Q 009512 10 PHGDGVDDSQSDVKEWSKDQREALPEEPKCVICGRYGEYICDETDDDVCSLECKQKLLCRVANANRGMRVVPPPPPERLP 89 (533)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (533)
..+.++++++++|||||++||||+||||+|++||||||||||+||||+||+|||++++..+..... .+..+.++.+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 78 (518)
T PLN00206 2 NEEGCNPHEDDVVKERSIEQREALPGEPKCVVCGRYGEYICDETDDDICSLECKQALLRRVAKSRV---AVGAPKPKRLP 78 (518)
T ss_pred CCCCCCcccchhhhhhhHHhcCCCCCCceEEEecCccceeccCCCCccccHHHHHHHHHHHhhccC---CcCCCchhhcC
Confidence 456778888999999999999999999999999999999999999999999999999988854322 33467778889
Q ss_pred CccccCccccCCcCccCcCCCHHHHHHHHhhcCceEecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 009512 90 ATDECFYVRESDENSGFQSLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSA 169 (533)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i 169 (533)
+++++||..++. ...+++.++++.+++.++|.+.|..+|.|+.+|+++++++.++++|...||..|||+|.++||.+
T Consensus 79 ~~~~~~~~~~~~---~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~i 155 (518)
T PLN00206 79 ATDECFYVRDPG---STSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAA 155 (518)
T ss_pred CcCCcCCccCcc---hhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 999999997654 12458999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCc
Q 009512 170 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDA 249 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~ 249 (533)
++|+|++++||||||||++|++|++.++...+........++++|||+||++||.|+.++++.+....++++..++||..
T Consensus 156 l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~ 235 (518)
T PLN00206 156 LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDA 235 (518)
T ss_pred hcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcc
Confidence 99999999999999999999999999987644333333467899999999999999999999999988999999999999
Q ss_pred hHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCcHHHH
Q 009512 250 MARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVE 329 (533)
Q Consensus 250 ~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~~~~~ 329 (533)
...+...+..+++|+|+||++|.+++.+....++++++||+||||+|++++|+.++..++..++.+|+++||||+++.++
T Consensus 236 ~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~~v~ 315 (518)
T PLN00206 236 MPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSPEVE 315 (518)
T ss_pred hHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCHHHH
Confidence 99998889899999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeE
Q 009512 330 KMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKA 409 (533)
Q Consensus 330 ~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~ 409 (533)
.++..+..++..+..+....+...+.+...++....+...+++++.......+++||||+++..++.++..|....++.+
T Consensus 316 ~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~ 395 (518)
T PLN00206 316 KFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKA 395 (518)
T ss_pred HHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcce
Confidence 99999999999999888888888889999999988888999999887666667899999999999999999985679999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCc
Q 009512 410 LSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 410 ~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~ 489 (533)
..+||++++.+|..+++.|++|+++|||||++++||||+|++++||+||+|.++.+|+||+||+||.|..|.+++|++++
T Consensus 396 ~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~ 475 (518)
T PLN00206 396 LSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEE 475 (518)
T ss_pred EEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHhchhc
Q 009512 490 NKNLFQELVDILKSSGAGIPRELINSRYT 518 (533)
Q Consensus 490 ~~~~~~~l~~~l~~~~~~~p~~l~~~~~~ 518 (533)
+...+.++++.|+.+++.+|++|+++++.
T Consensus 476 ~~~~~~~l~~~l~~~~~~vp~~l~~~~~~ 504 (518)
T PLN00206 476 DRNLFPELVALLKSSGAAIPRELANSRYL 504 (518)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHhChhh
Confidence 99999999999999999999999999953
No 2
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-79 Score=618.40 Aligned_cols=428 Identities=34% Similarity=0.598 Sum_probs=384.4
Q ss_pred CCCCCccccCccccCCcCccCcCCCHHHHHHHHhhcCceEecCC-CCCcccCccc-------------------------
Q 009512 86 ERLPATDECFYVRESDENSGFQSLTIGQTDSLRKRLEINVKGDA-VPAPILSFSS------------------------- 139 (533)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~p~~~~~f~~------------------------- 139 (533)
..++++++++|..++. .......+.+..+...++.+.+.. +|.|..+|+.
T Consensus 16 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPS----VKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSA 91 (519)
T ss_pred cccCcccccccccccc----cccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcch
Confidence 3466777777776644 445555555666666777777654 6666665554
Q ss_pred ----CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEE
Q 009512 140 ----CSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 215 (533)
Q Consensus 140 ----~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Li 215 (533)
+++++.+...++..||..|||+|.+.||.+++|+|++..|.||||||++|++|++.++... ........+|++||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~-~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNE-QGKLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhc-cccccCCCCCeEEE
Confidence 4556666777779999999999999999999999999999999999999999999999863 11223467899999
Q ss_pred EcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccch
Q 009512 216 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 295 (533)
Q Consensus 216 l~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~ 295 (533)
|+||||||.|+...+.+++..+.+++.+++||.+...|...+.++++|+|+|||+|+++++.+.+++.++.|+|+||||+
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR 250 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcchHHHHHHHHHhC-C-CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCC--CCCccceEEEEEecchhhHHHHH
Q 009512 296 MLQRGFRDQVMQIFRAI-S-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPN--MPNKAVKQLAIWVESNKKKQKLF 371 (533)
Q Consensus 296 ~~~~~~~~~i~~i~~~~-~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~i~~~~~~~~~~~k~~~l~ 371 (533)
|+++||+++++.|+.++ + ..|++++|||||.+++.++..++.+++.+.++... .++.++.|+..+++...|...|.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 3 34799999999999999999999999999988653 77889999999999999999999
Q ss_pred HHHHhcc-CCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 009512 372 DILMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 450 (533)
Q Consensus 372 ~~l~~~~-~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~ 450 (533)
.+|.... ..++++||||++++.|+.|+..|+ ..++++..|||+.+|.+|..+++.|++|+..|||||++++||||+|+
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~-~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~d 409 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLR-RKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPD 409 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHH-hcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcc
Confidence 9998865 556799999999999999999998 77899999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCCCCHHHHhchhcc
Q 009512 451 VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRYTV 519 (533)
Q Consensus 451 v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~~~~~ 519 (533)
|++|||||+|.++++|+||+||+||+|+.|.|++|++..+...+..+++.++..+|.+|+.+..+....
T Consensus 410 V~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~ 478 (519)
T KOG0331|consen 410 VDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVS 478 (519)
T ss_pred ccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999986443
No 3
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-76 Score=571.25 Aligned_cols=428 Identities=31% Similarity=0.514 Sum_probs=404.4
Q ss_pred CCCCCCccccCccccCCcCccCcCCCHHHHHHHHhhcCceEecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHH
Q 009512 85 PERLPATDECFYVRESDENSGFQSLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQ 164 (533)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ 164 (533)
...++||+++||..+++ |+.++..+...++..+++++.|..+|+|+.+|+++++++.|+..+++.-|.+|||+|.+
T Consensus 177 ~i~y~p~~kdfy~e~es----I~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~q 252 (731)
T KOG0339|consen 177 EIDYEPFNKDFYEEHES----IEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQ 252 (731)
T ss_pred hccccccccccccChhh----hhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCccccc
Confidence 44789999999998887 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEE
Q 009512 165 AIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALV 244 (533)
Q Consensus 165 ~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~ 244 (533)
++|..++|++++-+|.||||||.+|+.|++.|++.++... .+.+|..||++|||+||.|++.++++|++..+++++++
T Consensus 253 alptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~--~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ 330 (731)
T KOG0339|consen 253 ALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK--PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAV 330 (731)
T ss_pred ccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc--CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEe
Confidence 9999999999999999999999999999999999876543 37799999999999999999999999999999999999
Q ss_pred EcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-CCCcEEEeccc
Q 009512 245 VGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSAT 323 (533)
Q Consensus 245 ~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT 323 (533)
+||.+...|...|..+++|||||||+|++++..+..++.+++|+|+||+++|+++||+++++.|..++ +++|+|+||||
T Consensus 331 ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaT 410 (731)
T KOG0339|consen 331 YGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSAT 410 (731)
T ss_pred ecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 88999999999
Q ss_pred CcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchh-hHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHH
Q 009512 324 ISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK-KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAIS 402 (533)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~ 402 (533)
++..++.+++.++.+|+.+..++....+..+.|.+..+.... |...|+.-|.... ..+++|||+.-+..++.++..|.
T Consensus 411 f~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~-S~gkvlifVTKk~~~e~i~a~Lk 489 (731)
T KOG0339|consen 411 FKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFS-SEGKVLIFVTKKADAEEIAANLK 489 (731)
T ss_pred chHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhc-cCCcEEEEEeccCCHHHHHHHhc
Confidence 999999999999999999999999999999999998887654 4555555555443 34689999999999999999998
Q ss_pred hhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEE
Q 009512 403 VTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTA 482 (533)
Q Consensus 403 ~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~ 482 (533)
..++.+..+||+|.|.+|.+++..|+.+...|||+|++++||+||+.+++|||||+-.+++.|.|||||+||+|.+|.+
T Consensus 490 -lk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGva 568 (731)
T KOG0339|consen 490 -LKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVA 568 (731)
T ss_pred -cccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccccee
Confidence 8899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcCHHHHHHHHHHHHhcCCCCCHHHHhchhccC
Q 009512 483 IVFVNEENKNLFQELVDILKSSGAGIPRELINSRYTVG 520 (533)
Q Consensus 483 ~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~~~~~~ 520 (533)
++++++.|..++-.|++.|+.++|.||++|++++...+
T Consensus 569 yTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk~s 606 (731)
T KOG0339|consen 569 YTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMKSS 606 (731)
T ss_pred eEEechhhHHHhhHHHHHHhhccccCChHHHHHHhhhh
Confidence 99999999999999999999999999999999975543
No 4
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.2e-75 Score=571.88 Aligned_cols=411 Identities=35% Similarity=0.603 Sum_probs=390.1
Q ss_pred cCcCCCHHHHHHHHhhcCceEecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCc
Q 009512 105 GFQSLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSG 184 (533)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsG 184 (533)
.+..|++.+|.-|+..+.|.++|..+|.|+.+|++.+||..+++.+...||..|+|+|.++||..++.+|+|..|.||||
T Consensus 215 ~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsG 294 (673)
T KOG0333|consen 215 VLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSG 294 (673)
T ss_pred hHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhcc--cCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCc
Q 009512 185 KTASFLVPVISQCANIRLHH--SQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVE 262 (533)
Q Consensus 185 KT~~~llp~l~~l~~~~~~~--~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~ 262 (533)
||++|++|++..+...+... .....+|.++|++|||+|++|+.++..+|+..++++++.++||.+..+|-..+..+|+
T Consensus 295 ktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gce 374 (673)
T KOG0333|consen 295 KTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCE 374 (673)
T ss_pred ccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccce
Confidence 99999999999888765322 2456799999999999999999999999999999999999999999999889999999
Q ss_pred eeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCCC--------------------------Cc
Q 009512 263 LIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL--------------------------PQ 316 (533)
Q Consensus 263 Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~--------------------------~q 316 (533)
|+|+||++|++.+.+..+-++.+.+||+||||+|.|+||++++..++.+++. .|
T Consensus 375 iviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrq 454 (673)
T KOG0333|consen 375 IVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQ 454 (673)
T ss_pred eeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeE
Confidence 9999999999999999999999999999999999999999999999999821 58
Q ss_pred EEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHH
Q 009512 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADL 396 (533)
Q Consensus 317 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~ 396 (533)
+++||||+|+.++.+++.++.+|+.++++....+.+.+.|.+..+..+++..+|.+++.+. ..+|+|||+|+++.|+.
T Consensus 455 T~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~ 532 (673)
T KOG0333|consen 455 TVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADA 532 (673)
T ss_pred EEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999775 56899999999999999
Q ss_pred HHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCC
Q 009512 397 LSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQM 476 (533)
Q Consensus 397 l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~ 476 (533)
|++.|. +.|+.+..+||+.+|++|+.++..|++|...|||||++++||||||+|.+|||||++.|+++|.|||||+||+
T Consensus 533 lAk~Le-K~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRA 611 (673)
T KOG0333|consen 533 LAKILE-KAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRA 611 (673)
T ss_pred HHHHHh-hccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhcccccc
Confidence 999998 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEecCcCHHHHHHHHHHHH-hcCCCCCHHHHhchhc
Q 009512 477 GDEGTAIVFVNEENKNLFQELVDILK-SSGAGIPRELINSRYT 518 (533)
Q Consensus 477 g~~g~~~~l~~~~~~~~~~~l~~~l~-~~~~~~p~~l~~~~~~ 518 (533)
|+.|.|++|+++.+...|.+|...|. ......|++|.++...
T Consensus 612 Gk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~h~~a 654 (673)
T KOG0333|consen 612 GKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELANHPDA 654 (673)
T ss_pred ccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhccChhh
Confidence 99999999999999999999999887 5678889999988644
No 5
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-75 Score=553.17 Aligned_cols=424 Identities=32% Similarity=0.544 Sum_probs=383.9
Q ss_pred CCCCCccccCccccCCcCccCcCCCHHHHHHHHhhc-CceEec------CCCCCcccCccc-CCCCHHHHHHHHHcCCCC
Q 009512 86 ERLPATDECFYVRESDENSGFQSLTIGQTDSLRKRL-EINVKG------DAVPAPILSFSS-CSLSQKLLQNIEAAGYDM 157 (533)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~------~~~p~~~~~f~~-~~l~~~l~~~l~~~g~~~ 157 (533)
.++||..++||...+. .+.|+..++++++++. .|.+.. .++|+|.-+|++ +.-.+++++++++.||.+
T Consensus 167 ~~lpPi~knfYke~~e----~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqK 242 (629)
T KOG0336|consen 167 AKLPPIKKNFYKESNE----TSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQK 242 (629)
T ss_pred ccCCchhhhhhhcCch----hccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCC
Confidence 3689999999997776 8899999999999874 466542 268999999998 578899999999999999
Q ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCC
Q 009512 158 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL 237 (533)
Q Consensus 158 p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~ 237 (533)
|+|+|+|+||.+++|.|++..|.||+|||++||+|.+.|+..++.... ...++.+|+++|||+|+.|+.-+.+++.-.
T Consensus 243 PtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~-qr~~p~~lvl~ptreLalqie~e~~kysyn- 320 (629)
T KOG0336|consen 243 PTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE-QRNGPGVLVLTPTRELALQIEGEVKKYSYN- 320 (629)
T ss_pred CCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhh-ccCCCceEEEeccHHHHHHHHhHHhHhhhc-
Confidence 999999999999999999999999999999999999999887654432 356789999999999999999998887543
Q ss_pred CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-CCCc
Q 009512 238 PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQ 316 (533)
Q Consensus 238 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~~~q 316 (533)
+++.++++||.+...|+..++.+.+|+++||++|.++...+.+++..+.|+|+||||+|+||||+++++.|+-.+ +++|
T Consensus 321 g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRq 400 (629)
T KOG0336|consen 321 GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQ 400 (629)
T ss_pred CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcce
Confidence 789999999999999999999999999999999999999999999999999999999999999999999998777 8999
Q ss_pred EEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCC-CccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHH
Q 009512 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMP-NKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGAD 395 (533)
Q Consensus 317 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~ 395 (533)
+++.|||||..+.+++..++++|+.+.++..... ...+.|.+....+.+|. .+...+......+.++||||.++..|+
T Consensus 401 tvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~-~~~~~f~~~ms~ndKvIiFv~~K~~AD 479 (629)
T KOG0336|consen 401 TVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKL-EIVQFFVANMSSNDKVIIFVSRKVMAD 479 (629)
T ss_pred eeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHH-HHHHHHHHhcCCCceEEEEEechhhhh
Confidence 9999999999999999999999999988887644 46778887555555555 444444444455679999999999999
Q ss_pred HHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCC
Q 009512 396 LLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQ 475 (533)
Q Consensus 396 ~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR 475 (533)
.|+.-|. ..|+.+..+||+..|.+|+..++.|++|+++|||||++++||||++++.||+|||+|.++++|+||+||+||
T Consensus 480 ~LSSd~~-l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGR 558 (629)
T KOG0336|consen 480 HLSSDFC-LKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGR 558 (629)
T ss_pred hccchhh-hcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhccccc
Confidence 9999998 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEecCcCHHHHHHHHHHHHhcCCCCCHHHHhchh
Q 009512 476 MGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRY 517 (533)
Q Consensus 476 ~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~~~ 517 (533)
+|+.|.+++|+..+|...+.+|+++|++++|+||++|..++.
T Consensus 559 aGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAe 600 (629)
T KOG0336|consen 559 AGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAE 600 (629)
T ss_pred CCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHH
Confidence 999999999999999999999999999999999999999974
No 6
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5.4e-73 Score=600.96 Aligned_cols=428 Identities=34% Similarity=0.590 Sum_probs=392.5
Q ss_pred CCCCCCccccCccccCCcCccCcCCCHHHHHHHHhhcCceE-ecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHH
Q 009512 85 PERLPATDECFYVRESDENSGFQSLTIGQTDSLRKRLEINV-KGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQM 163 (533)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~ 163 (533)
...++|++++||..++. ++.++.++++.+++...+.+ .|..+|.|+.+|+++++++.+++.|.+.||.+|||+|.
T Consensus 83 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~ 158 (545)
T PTZ00110 83 SINLVPFEKNFYKEHPE----VSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQV 158 (545)
T ss_pred cccccchhhhcccCChh----hhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHH
Confidence 34678999999987765 88999999999999999886 68999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEE
Q 009512 164 QAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTAL 243 (533)
Q Consensus 164 ~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~ 243 (533)
++||.+++|+|++++||||||||++|++|++.++..++.. ....++.+|||+||++||.|+.++++++....++++..
T Consensus 159 ~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~--~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~ 236 (545)
T PTZ00110 159 QGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL--RYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTV 236 (545)
T ss_pred HHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc--cCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEE
Confidence 9999999999999999999999999999999988764321 22457899999999999999999999999888899999
Q ss_pred EEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-CCCcEEEecc
Q 009512 244 VVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSA 322 (533)
Q Consensus 244 ~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~~~q~i~~SA 322 (533)
++||.+...+...+..+++|+|+||++|.+++.+....+.++++||+||||+|++++|..++..++..+ +..|+++|||
T Consensus 237 ~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SA 316 (545)
T PTZ00110 237 AYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSA 316 (545)
T ss_pred EeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEe
Confidence 999999999988999999999999999999999988889999999999999999999999999999988 6789999999
Q ss_pred cCcHHHHHHHHhhcC-CeEEEEeCCCC-CCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHH
Q 009512 323 TISQEVEKMSSSISK-DIVVVSVGKPN-MPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNA 400 (533)
Q Consensus 323 T~~~~~~~~~~~~~~-~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~ 400 (533)
|+|.+++.++..++. +++.+.++... .....+.+.+..+....|...|.+++......+.++||||+++..|+.++..
T Consensus 317 T~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~ 396 (545)
T PTZ00110 317 TWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKE 396 (545)
T ss_pred CCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHH
Confidence 999999999988875 57777766543 3456678888888888888888888877655677999999999999999999
Q ss_pred HHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCcc
Q 009512 401 ISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEG 480 (533)
Q Consensus 401 l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g 480 (533)
|. ..++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.++++|+||+||+||.|+.|
T Consensus 397 L~-~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G 475 (545)
T PTZ00110 397 LR-LDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKG 475 (545)
T ss_pred HH-HcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCc
Confidence 98 78999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCcCHHHHHHHHHHHHhcCCCCCHHHHhchhcc
Q 009512 481 TAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRYTV 519 (533)
Q Consensus 481 ~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~~~~~ 519 (533)
.|++|+++.+...+.+|++.|+.+++.+|++|.+++...
T Consensus 476 ~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~ 514 (545)
T PTZ00110 476 ASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNER 514 (545)
T ss_pred eEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHh
Confidence 999999999999999999999999999999999997544
No 7
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.6e-71 Score=547.24 Aligned_cols=395 Identities=36% Similarity=0.615 Sum_probs=370.7
Q ss_pred cCceEecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhh
Q 009512 121 LEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANI 200 (533)
Q Consensus 121 ~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~ 200 (533)
..+.+.|..+|.++..|.+..+.+.+..+++..||..|||+|+.+||.+..|++++++|+||||||.+|++|++.+++..
T Consensus 60 i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~ 139 (482)
T KOG0335|consen 60 IPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDE 139 (482)
T ss_pred eeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhc
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred hhcccCC-C--CCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHc
Q 009512 201 RLHHSQN-Q--KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK 277 (533)
Q Consensus 201 ~~~~~~~-~--~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~ 277 (533)
....... . ..|.+||++|||||+.|++++++++.-...++.+.+|||.+...+...+.++|+|+|||||+|.+++.+
T Consensus 140 ~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~ 219 (482)
T KOG0335|consen 140 GPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER 219 (482)
T ss_pred CcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc
Confidence 4432221 1 359999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred CCCCCCCeeEEEEeccchhhh-cchHHHHHHHHHhC-----CCCcEEEecccCcHHHHHHHHhhcCC-eEEEEeCCCCCC
Q 009512 278 HDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-----SLPQILMYSATISQEVEKMSSSISKD-IVVVSVGKPNMP 350 (533)
Q Consensus 278 ~~~~l~~i~~vVvDEah~~~~-~~~~~~i~~i~~~~-----~~~q~i~~SAT~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 350 (533)
+.+.++.++++|+||||+|+| ++|+++++.|+... ...|+++||||+|..++.++..++.+ ++.+.++.....
T Consensus 220 g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~ 299 (482)
T KOG0335|consen 220 GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGST 299 (482)
T ss_pred ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccc
Confidence 999999999999999999999 99999999999987 46799999999999999999999886 899999999999
Q ss_pred CccceEEEEEecchhhHHHHHHHHHhccC--CCC-----CEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHH
Q 009512 351 NKAVKQLAIWVESNKKKQKLFDILMSKQH--FTP-----PAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERRE 423 (533)
Q Consensus 351 ~~~i~~~~~~~~~~~k~~~l~~~l~~~~~--~~~-----~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~ 423 (533)
..++.|.+.|+.+..|+.+|++++..... ..+ +++|||.+++.|+.++.+|. ..++++..+||+.++.+|..
T Consensus 300 ~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~-~~~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 300 SENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLS-SNGYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred cccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHh-cCCCCceeecchhhhhHHHH
Confidence 99999999999999999999999986441 123 79999999999999999999 89999999999999999999
Q ss_pred HHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHh
Q 009512 424 IMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 424 ~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~ 503 (533)
.++.|+.|.+.|||||++++||||+|+|++||+||+|.+.++|+|||||+||.|+.|.++.|++..+....+.|+++|.+
T Consensus 379 al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 379 ALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred HHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHhch
Q 009512 504 SGAGIPRELINSR 516 (533)
Q Consensus 504 ~~~~~p~~l~~~~ 516 (533)
+++++|+||.++.
T Consensus 459 a~q~vP~wl~~~~ 471 (482)
T KOG0335|consen 459 ANQEVPQWLSELS 471 (482)
T ss_pred hcccCcHHHHhhh
Confidence 9999999999943
No 8
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.6e-72 Score=529.56 Aligned_cols=407 Identities=31% Similarity=0.559 Sum_probs=379.8
Q ss_pred CcCCCHHHHHHHHhhcCceEecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCch
Q 009512 106 FQSLTIGQTDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGK 185 (533)
Q Consensus 106 ~~~~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGK 185 (533)
+..|++++.+..|+++.|.+.|+.+|.|+.+|.++.+|..+++.|++.|+.+|||+|.|.+|.+++|||++..|-|||||
T Consensus 141 ir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGK 220 (610)
T KOG0341|consen 141 IRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGK 220 (610)
T ss_pred HHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhc-ccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCC------CCeEEEEEcCCchHHHHHHHH
Q 009512 186 TASFLVPVISQCANIRLH-HSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL------PFKTALVVGGDAMARQVYRIQ 258 (533)
Q Consensus 186 T~~~llp~l~~l~~~~~~-~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~------~~~~~~~~gg~~~~~~~~~l~ 258 (533)
|++|.+|++..++.+... ....+.+|..||+||+|+||.|.++.+..+...+ .++..+..||.+...|...++
T Consensus 221 TlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~ 300 (610)
T KOG0341|consen 221 TLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVR 300 (610)
T ss_pred eEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHh
Confidence 999999999988876443 3356789999999999999999998887765422 278889999999999999999
Q ss_pred cCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcC
Q 009512 259 QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISK 337 (533)
Q Consensus 259 ~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~ 337 (533)
.|.+|+|+|||+|.+++....++|+-+.|+++||||+|.|+||+..++.|+..+ ..+|+++||||+|..++.+++.-+.
T Consensus 301 ~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALV 380 (610)
T KOG0341|consen 301 RGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALV 380 (610)
T ss_pred cCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999999 5689999999999999999999999
Q ss_pred CeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCC
Q 009512 338 DIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKP 417 (533)
Q Consensus 338 ~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~ 417 (533)
.|+.++++...+.+-++.|.+.++....|.-.+++-|. ...+|+||||..+..++.+.++|- ..|..++.+|||..
T Consensus 381 KPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQ---KT~PpVLIFaEkK~DVD~IhEYLL-lKGVEavaIHGGKD 456 (610)
T KOG0341|consen 381 KPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQ---KTSPPVLIFAEKKADVDDIHEYLL-LKGVEAVAIHGGKD 456 (610)
T ss_pred cceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhc---cCCCceEEEeccccChHHHHHHHH-HccceeEEeecCcc
Confidence 99999999999999999998888888877766666654 456799999999999999999998 78999999999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCc-CHHHHHH
Q 009512 418 MKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQE 496 (533)
Q Consensus 418 ~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~-~~~~~~~ 496 (533)
|++|...++.|+.|+-+|||||++++.|+|+|++.+|||||+|..+++|+|||||+||.|+.|.|.+|++.+ +...+-+
T Consensus 457 QedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlD 536 (610)
T KOG0341|consen 457 QEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLD 536 (610)
T ss_pred hhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976 6678899
Q ss_pred HHHHHHhcCCCCCHHHHhch
Q 009512 497 LVDILKSSGAGIPRELINSR 516 (533)
Q Consensus 497 l~~~l~~~~~~~p~~l~~~~ 516 (533)
+..+|...+|.+|+.|..+.
T Consensus 537 LK~LL~EakQ~vP~~L~~L~ 556 (610)
T KOG0341|consen 537 LKHLLQEAKQEVPPVLAELA 556 (610)
T ss_pred HHHHHHHhhccCCHHHHHhC
Confidence 99999999999999998775
No 9
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-70 Score=518.46 Aligned_cols=365 Identities=30% Similarity=0.507 Sum_probs=348.2
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCce
Q 009512 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
...+|.++++.+.+.+++...|+..||++|+++||.++.|+|+|..|.||||||.+|++|++.+++.. .+.++
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~-------p~~~~ 131 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE-------PKLFF 131 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC-------CCCce
Confidence 56789999999999999999999999999999999999999999999999999999999999999973 34588
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHH-cCCCCCCCeeEEEEe
Q 009512 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLM-KHDIELDDIRMFVLD 291 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~-~~~~~l~~i~~vVvD 291 (533)
+|||+||||||.|+.+.+..++..+++++..+.||.+...|...+.+.++|+|||||+|++++. .+.+++..++++|+|
T Consensus 132 ~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlD 211 (476)
T KOG0330|consen 132 ALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLD 211 (476)
T ss_pred EEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999 477899999999999
Q ss_pred ccchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHH
Q 009512 292 EVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKL 370 (533)
Q Consensus 292 Eah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 370 (533)
|||+++++.|...+..|+..+ ..+|+++||||++..+.++....+.+|..+.+.......+.+.|.+..+....|...|
T Consensus 212 EADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 212 EADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred hHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhH
Confidence 999999999999999999999 5689999999999999999999999999999999888889999999999999999999
Q ss_pred HHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 009512 371 FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 450 (533)
Q Consensus 371 ~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~ 450 (533)
+.+++... +.++||||++...++.++-.|+ ..|+.+..+||+|+++.|...++.|++|.++||||||+++||+|+|.
T Consensus 292 V~ll~e~~--g~s~iVF~~t~~tt~~la~~L~-~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~ 368 (476)
T KOG0330|consen 292 VYLLNELA--GNSVIVFCNTCNTTRFLALLLR-NLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPH 368 (476)
T ss_pred HHHHHhhc--CCcEEEEEeccchHHHHHHHHH-hcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCC
Confidence 99998755 4789999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCC
Q 009512 451 VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAG 507 (533)
Q Consensus 451 v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~ 507 (533)
+++|||||+|.+..+|+||+||++|+|.+|.+++|++..|.+.+.+|...+.+....
T Consensus 369 Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 369 VDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred ceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999999999999999999999999999887655
No 10
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.2e-70 Score=576.27 Aligned_cols=456 Identities=30% Similarity=0.525 Sum_probs=419.8
Q ss_pred hhhhhccCCCccCCCCCCCCCCCccccCccccCCcCccCcCCCHHHHHHHHhhcC-ceEecCCCCCcccCcccCCCCHHH
Q 009512 68 CRVANANRGMRVVPPPPPERLPATDECFYVRESDENSGFQSLTIGQTDSLRKRLE-INVKGDAVPAPILSFSSCSLSQKL 146 (533)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~p~~~~~f~~~~l~~~l 146 (533)
..++.+.++....-..++..+.||.++||....+ ++.|+..+++.++..+. |.+.|..+|.|+.+|.++|++..+
T Consensus 301 ~~~~~~~~~~~~~~~~S~~~~epFRknfy~e~~d----i~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~i 376 (997)
T KOG0334|consen 301 KNMNLKAKKNLIQVDHSKISYEPFRKNFYIEVRD----IKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKI 376 (997)
T ss_pred HHhccccccceeecccccccchhhhhcccccchh----HHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHH
Confidence 3444444433333344456789999999998888 99999999999999988 999999999999999999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009512 147 LQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 147 ~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
+..++++||..|+|+|.+|||++++|+++|.+|.||||||++|+||++.|+..++.... +.||.+||++|||+|+.|+
T Consensus 377 l~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~--gdGPi~li~aPtrela~QI 454 (997)
T KOG0334|consen 377 LETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEE--GDGPIALILAPTRELAMQI 454 (997)
T ss_pred HHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhh--CCCceEEEEcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988776543 5699999999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCC---CCCCCeeEEEEeccchhhhcchHH
Q 009512 227 EEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD---IELDDIRMFVLDEVDCMLQRGFRD 303 (533)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~---~~l~~i~~vVvDEah~~~~~~~~~ 303 (533)
.+++++|...+++++++++||.....++..+++++.|+|||||++++++..+. .++.++.++|+||||+|++++|.+
T Consensus 455 ~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfeP 534 (997)
T KOG0334|consen 455 HREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEP 534 (997)
T ss_pred HHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCc
Confidence 99999999999999999999999999999999999999999999999998654 456677799999999999999999
Q ss_pred HHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEec-chhhHHHHHHHHHhccCCC
Q 009512 304 QVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE-SNKKKQKLFDILMSKQHFT 381 (533)
Q Consensus 304 ~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~-~~~k~~~l~~~l~~~~~~~ 381 (533)
++..|+.++ +.+|+++||||+|..++.++...+..|+.+.++.....+..+.|.+..+. +..|..+|+++|..... .
T Consensus 535 q~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e-~ 613 (997)
T KOG0334|consen 535 QITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYE-D 613 (997)
T ss_pred ccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhh-c
Confidence 999999999 78999999999999999999999999999999999999999999999988 88999999999988766 6
Q ss_pred CCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCC
Q 009512 382 PPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN 461 (533)
Q Consensus 382 ~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~ 461 (533)
.++||||.+...|+.|.+.|. ..|+.+..+||+.++.+|..+++.|++|.+.+||||+++++|+|++.+..|||||+|.
T Consensus 614 ~~tiiFv~~qe~~d~l~~~L~-~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pn 692 (997)
T KOG0334|consen 614 GKTIIFVDKQEKADALLRDLQ-KAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPN 692 (997)
T ss_pred CCEEEEEcCchHHHHHHHHHH-hcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccch
Confidence 799999999999999999998 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCCCCHHHHhchh------------ccCCC-CCCCCC
Q 009512 462 SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRY------------TVGSF-SSGKGF 528 (533)
Q Consensus 462 s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~~~------------~~~~~-~~~~~~ 528 (533)
.+.+|+||.||+||+|++|.|++|+.+.+..+..+|.+.|+.+++.+|..|..++. .++++ +.|+|.
T Consensus 693 h~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P~~l~~l~~~f~~~~~~~~s~~~~~Gg~~G~g~ 772 (997)
T KOG0334|consen 693 HYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVPKLLQALSERFKAKQKAGGSQVHGGGGFGGKGL 772 (997)
T ss_pred hHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCchHHHHHHHHHHhhhhcccccccccCcccCCcc
Confidence 99999999999999999999999999999999999999999999999998887752 23444 888998
Q ss_pred CCC
Q 009512 529 KKR 531 (533)
Q Consensus 529 k~~ 531 (533)
|++
T Consensus 773 ~~~ 775 (997)
T KOG0334|consen 773 KFD 775 (997)
T ss_pred ccc
Confidence 774
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.4e-66 Score=543.80 Aligned_cols=371 Identities=34% Similarity=0.611 Sum_probs=339.7
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEE
Q 009512 135 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
..|+++++++.+++.|.+.||..|||+|.++||.++.|+|+++.|+||||||++|++|++.++... ......+ +|
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~----~~~~~~~-aL 103 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS----VERKYVS-AL 103 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc----cccCCCc-eE
Confidence 689999999999999999999999999999999999999999999999999999999999996632 0111112 99
Q ss_pred EEcccHHHHHHHHHHHHHHhcCC-CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEecc
Q 009512 215 VLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEa 293 (533)
|++||||||.|+++.+..+.... ++++..++||.+...|...+..+++|+|+|||+|++++.+..+++..+.++|+|||
T Consensus 104 il~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEA 183 (513)
T COG0513 104 ILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEA 183 (513)
T ss_pred EECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccH
Confidence 99999999999999999999988 79999999999999999999989999999999999999999999999999999999
Q ss_pred chhhhcchHHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCC--CCccceEEEEEecchh-hHHH
Q 009512 294 DCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNM--PNKAVKQLAIWVESNK-KKQK 369 (533)
Q Consensus 294 h~~~~~~~~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~-k~~~ 369 (533)
|+|+++||.+++..|+..++ +.|+++||||+|..+..++..++.+|..+.+..... ....+.|.+..+.... |...
T Consensus 184 DrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~ 263 (513)
T COG0513 184 DRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLEL 263 (513)
T ss_pred hhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHH
Confidence 99999999999999999995 599999999999999999999999998888875554 7888999999998876 8888
Q ss_pred HHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC
Q 009512 370 LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL 449 (533)
Q Consensus 370 l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~ 449 (533)
|..++..... .++||||+++..++.|+..|. ..|+.+..+||+++|.+|..+++.|++|+.+||||||+++||||||
T Consensus 264 L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~-~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~ 340 (513)
T COG0513 264 LLKLLKDEDE--GRVIVFVRTKRLVEELAESLR-KRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIP 340 (513)
T ss_pred HHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHH-HCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcc
Confidence 8888865443 369999999999999999998 8899999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCc-CHHHHHHHHHHHHhc---CCCCCHHHH
Q 009512 450 GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQELVDILKSS---GAGIPRELI 513 (533)
Q Consensus 450 ~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~-~~~~~~~l~~~l~~~---~~~~p~~l~ 513 (533)
++++|||||+|.+.+.|+||+||+||+|..|.+++|+++. +...+..+.+.+... ...+|....
T Consensus 341 ~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~~~~~~~~~~~ 408 (513)
T COG0513 341 DVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLPSAVLLPLDEP 408 (513)
T ss_pred ccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhccccccccCCcchh
Confidence 9999999999999999999999999999999999999986 899999999998775 345665433
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-63 Score=518.63 Aligned_cols=369 Identities=26% Similarity=0.475 Sum_probs=331.7
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceE
Q 009512 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
-.+|++++|++.+++.|...||..|+|+|.++||.++.|+|++++||||||||++|++|++..+...+........++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 35899999999999999999999999999999999999999999999999999999999999987643322222346899
Q ss_pred EEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEecc
Q 009512 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEa 293 (533)
|||+||++||.|+.+++..+....++++..++||.....+...+..+++|+|+||++|.+++....+.++++++||+|||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999998899999999999988888888888999999999999999988889999999999999
Q ss_pred chhhhcchHHHHHHHHHhCC---CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHH
Q 009512 294 DCMLQRGFRDQVMQIFRAIS---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKL 370 (533)
Q Consensus 294 h~~~~~~~~~~i~~i~~~~~---~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 370 (533)
|++++++|...+..++..++ ..+.+++|||++..+..+....+.++..+.+.........+.+...+.....|...+
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~l 246 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRLL 246 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHHH
Confidence 99999999999999999885 346799999999999999888888888877766655566677777777777777777
Q ss_pred HHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 009512 371 FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 450 (533)
Q Consensus 371 ~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~ 450 (533)
..++... ...++||||+++..|+.++..|. ..++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+
T Consensus 247 ~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~-~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~ 323 (423)
T PRK04837 247 QTLIEEE--WPDRAIIFANTKHRCEEIWGHLA-ADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPA 323 (423)
T ss_pred HHHHHhc--CCCeEEEEECCHHHHHHHHHHHH-hCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccc
Confidence 7777543 34689999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcC
Q 009512 451 VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSG 505 (533)
Q Consensus 451 v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~ 505 (533)
+++||+||+|.+..+|+||+||+||.|+.|.|++|+++.+...+..+.+.+....
T Consensus 324 v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~ 378 (423)
T PRK04837 324 VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSI 378 (423)
T ss_pred cCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999998888888877776553
No 13
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-65 Score=493.75 Aligned_cols=373 Identities=32% Similarity=0.526 Sum_probs=335.6
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceE
Q 009512 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
..+|.+++|+..+++.+..+||..|||+|..+||..+-|+|+..+|.||||||.+|.+|+|.+++-.+ .+-..-++
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrP----k~~~~TRV 255 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRP----KKVAATRV 255 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCc----ccCcceeE
Confidence 45899999999999999999999999999999999999999999999999999999999999988532 22345689
Q ss_pred EEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHc-CCCCCCCeeEEEEec
Q 009512 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIELDDIRMFVLDE 292 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~i~~vVvDE 292 (533)
|||+|||+|+.|++...++++....+.+.+..||.+...|-..|++.++|+|+|||+|++++.+ ..++++++.++|+||
T Consensus 256 LVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDE 335 (691)
T KOG0338|consen 256 LVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDE 335 (691)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEech
Confidence 9999999999999999999999999999999999999999999999999999999999999987 568899999999999
Q ss_pred cchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecc---hhhHH
Q 009512 293 VDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES---NKKKQ 368 (533)
Q Consensus 293 ah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~---~~k~~ 368 (533)
||+|++.+|..++..|+... +.+|+++||||+..++..++..-+++|+.+.+...........|.++.+.. ..+..
T Consensus 336 ADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea 415 (691)
T KOG0338|consen 336 ADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREA 415 (691)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHH
Confidence 99999999999999999988 678999999999999999999999999999998887777777777765542 22344
Q ss_pred HHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC
Q 009512 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL 448 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi 448 (533)
.+..++.... ..+++||+.++..|..+.-.|- ..|+.+.-+||.++|.+|...++.|++++++|||||++++|||||
T Consensus 416 ~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllG-Llgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI 492 (691)
T KOG0338|consen 416 MLASLITRTF--QDRTIVFVRTKKQAHRLRILLG-LLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDI 492 (691)
T ss_pred HHHHHHHHhc--ccceEEEEehHHHHHHHHHHHH-HhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCc
Confidence 4455554433 4579999999999999999998 889999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhc-----CCCCCHHHH
Q 009512 449 LGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS-----GAGIPRELI 513 (533)
Q Consensus 449 ~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~-----~~~~p~~l~ 513 (533)
++|.+||||++|.++..|+||+||+.|+|+.|.+++|+.+.+...++.+++-.... +..+|++..
T Consensus 493 ~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~I 562 (691)
T KOG0338|consen 493 EGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVI 562 (691)
T ss_pred cceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999998875332 345555443
No 14
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.9e-64 Score=457.17 Aligned_cols=374 Identities=29% Similarity=0.562 Sum_probs=347.8
Q ss_pred CCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCC
Q 009512 131 PAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKN 210 (533)
Q Consensus 131 p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~ 210 (533)
-.++.+|++++|.+.+++.+...||.+|+.+|+.|++.++.|+|++++|..|+|||.+|.+-++..+.- ..+.
T Consensus 23 ~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~-------~~r~ 95 (400)
T KOG0328|consen 23 VKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI-------SVRE 95 (400)
T ss_pred cccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc-------ccce
Confidence 346779999999999999999999999999999999999999999999999999999998777655432 1234
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEE
Q 009512 211 PLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVL 290 (533)
Q Consensus 211 ~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVv 290 (533)
-.+||++||||||.|+.+.+..++..+++.+..+.||.+..+.+..+..|.+++.+|||++++++++..+.-+.++++|+
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVL 175 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVL 175 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEe
Confidence 66999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccchhhhcchHHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchh-hHH
Q 009512 291 DEVDCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK-KKQ 368 (533)
Q Consensus 291 DEah~~~~~~~~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~ 368 (533)
||||.|++.||..++..+++.++ ..|++++|||+|.++.++...++.+|+.+-+...+.+.+.++|++..++.++ |.+
T Consensus 176 DEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfd 255 (400)
T KOG0328|consen 176 DEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFD 255 (400)
T ss_pred ccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHh
Confidence 99999999999999999999995 8999999999999999999999999999999999999999999999998887 777
Q ss_pred HHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC
Q 009512 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL 448 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi 448 (533)
.|.++-.... -...+|||+++..++.|.+.++ ..++.+.++||+|++++|+.+++.|++|+.+||++|++.+||+|+
T Consensus 256 tLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~-~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv 332 (400)
T KOG0328|consen 256 TLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMR-EANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV 332 (400)
T ss_pred HHHHHhhhhe--hheEEEEecccchhhHHHHHHH-hhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc
Confidence 7777654432 2368999999999999999998 889999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCCCCHHHHh
Q 009512 449 LGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELIN 514 (533)
Q Consensus 449 ~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l~~ 514 (533)
|.+++|||||+|.+.+.|+|||||.||.|++|.|+-|+..++.+.++++.+.++-...++|-.+.+
T Consensus 333 ~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nvad 398 (400)
T KOG0328|consen 333 QQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNVAD 398 (400)
T ss_pred ceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchhhh
Confidence 999999999999999999999999999999999999999999999999999999998888865443
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9.8e-62 Score=507.62 Aligned_cols=366 Identities=31% Similarity=0.585 Sum_probs=328.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEE
Q 009512 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 215 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Li 215 (533)
+|++++|++.+.+.|.+.||..|||+|.++||.++.|+|++++||||||||++|++|++..+....... .....+++||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~-~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHA-KGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhccccc-ccCCCceEEE
Confidence 689999999999999999999999999999999999999999999999999999999999886532111 1123458999
Q ss_pred EcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccch
Q 009512 216 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 295 (533)
Q Consensus 216 l~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~ 295 (533)
|+||++||.|+.+.++.+....+++...++||.+...+...+..+++|+|+||++|++++....+.++++++|||||||+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 99999999999999999999889999999999998888888888899999999999999998888899999999999999
Q ss_pred hhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHH
Q 009512 296 MLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDIL 374 (533)
Q Consensus 296 ~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l 374 (533)
|++++|...+..++..+ ...|+++||||++..+..++..++.++..+.+.........+.+.+..+....+...+..++
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999888 45789999999999999999999988888777666656666777777777666666555555
Q ss_pred HhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEE
Q 009512 375 MSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQV 454 (533)
Q Consensus 375 ~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~V 454 (533)
.. ....++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++++|
T Consensus 241 ~~--~~~~~~lVF~~t~~~~~~l~~~L~-~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 241 GK--GNWQQVLVFTRTKHGANHLAEQLN-KDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred Hc--CCCCcEEEEcCcHHHHHHHHHHHH-HCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 43 234589999999999999999998 789999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcC
Q 009512 455 IIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSG 505 (533)
Q Consensus 455 I~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~ 505 (533)
|+|++|.+..+|+||+||+||.|..|.|++|+...+...+..+.+.+....
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999988877653
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=5.3e-61 Score=510.90 Aligned_cols=369 Identities=31% Similarity=0.524 Sum_probs=328.6
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCce
Q 009512 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
...+|++++|++.+++.|.+.||..|||+|.++||.++.|+|++++||||||||++|++|++.++.............++
T Consensus 7 ~~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~r 86 (572)
T PRK04537 7 TDLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPR 86 (572)
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCce
Confidence 33479999999999999999999999999999999999999999999999999999999999988753221111223578
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcC-CCCCCCeeEEEEe
Q 009512 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-DIELDDIRMFVLD 291 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~i~~vVvD 291 (533)
+|||+||++|+.|+++.++++....++++..++||.....+...+..+++|+|+||++|++++.+. .+.+..+++||||
T Consensus 87 aLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViD 166 (572)
T PRK04537 87 ALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLD 166 (572)
T ss_pred EEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEec
Confidence 999999999999999999999998899999999999988888888888999999999999998875 4678899999999
Q ss_pred ccchhhhcchHHHHHHHHHhCC---CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHH
Q 009512 292 EVDCMLQRGFRDQVMQIFRAIS---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQ 368 (533)
Q Consensus 292 Eah~~~~~~~~~~i~~i~~~~~---~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 368 (533)
|||+|++++|...+..++..++ ..|+++||||++..+..+...++.++..+.+.........+.+.+.......+..
T Consensus 167 EAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 167 EADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred CHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHH
Confidence 9999999999999999999885 5799999999999999999888888776666555555666777777777777777
Q ss_pred HHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC
Q 009512 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL 448 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi 448 (533)
.+..++.. ..+.++||||+++..++.+++.|. ..++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+
T Consensus 247 ~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~-~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDi 323 (572)
T PRK04537 247 LLLGLLSR--SEGARTMVFVNTKAFVERVARTLE-RHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHI 323 (572)
T ss_pred HHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHH-HcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCc
Confidence 77777754 335689999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhc
Q 009512 449 LGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 449 ~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~ 504 (533)
|++++||+||+|.+..+|+||+||+||.|..|.|++|+++.+...+.++.+.+...
T Consensus 324 p~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 324 DGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred cCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999998888888887776554
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.7e-60 Score=500.26 Aligned_cols=359 Identities=31% Similarity=0.514 Sum_probs=326.2
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceE
Q 009512 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
..+|++++|++.+.+.|.+.||..|||+|.++||.++.|+|++++||||||||++|++|++.++.. ....+++
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~-------~~~~~~~ 75 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDV-------KRFRVQA 75 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhh-------ccCCceE
Confidence 357999999999999999999999999999999999999999999999999999999999988753 1235679
Q ss_pred EEEcccHHHHHHHHHHHHHHhcCC-CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEec
Q 009512 214 MVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDE 292 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDE 292 (533)
||++||++|+.|+.++++.+.... +.++..++||.+...+...+..+++|+|+||++|.+++.+..+.+.++++||+||
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 999999999999999999987654 6889999999999998888888999999999999999999888899999999999
Q ss_pred cchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHH
Q 009512 293 VDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 371 (533)
Q Consensus 293 ah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 371 (533)
||+|++++|...+..++..+ +..|+++||||+++.+..++..++.++..+.+.... ....+.+.+..+....|...+.
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHH
Confidence 99999999999999999998 467999999999999999999999988888776544 3445778888888878888888
Q ss_pred HHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCc
Q 009512 372 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 451 (533)
Q Consensus 372 ~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v 451 (533)
.++... ...++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++
T Consensus 235 ~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~-~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v 311 (460)
T PRK11776 235 RLLLHH--QPESCVVFCNTKKECQEVADALN-AQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKAL 311 (460)
T ss_pred HHHHhc--CCCceEEEECCHHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcC
Confidence 887543 34579999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHh
Q 009512 452 RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 452 ~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~ 503 (533)
++||+||+|.+...|+||+||+||.|..|.|++|+++.+...+..+.+.+..
T Consensus 312 ~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 312 EAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred CeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999988888888776654
No 18
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-61 Score=452.70 Aligned_cols=367 Identities=30% Similarity=0.465 Sum_probs=333.5
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCce
Q 009512 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
....|+.+|+++|+.+.|+..|+..|||+|..+||.++.|+|+|-+|.||||||++|.+|+++.|... ..+..
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed-------P~giF 77 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED-------PYGIF 77 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC-------CCcce
Confidence 35679999999999999999999999999999999999999999999999999999999999998753 35677
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcC----CCCCCCeeEE
Q 009512 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH----DIELDDIRMF 288 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~----~~~l~~i~~v 288 (533)
+||++|||+||.|+.+++..+++.+++++..++||.+.-.|...+.+..+++|+|||++.+++..+ ...+++++++
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkfl 157 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFL 157 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeE
Confidence 999999999999999999999999999999999999999999999999999999999999999875 2357899999
Q ss_pred EEeccchhhhcchHHHHHHHHHhCCCC-cEEEecccCcHHHHHHHHhhcCC--eEEEEeCCCCCCCccceEEEEEecchh
Q 009512 289 VLDEVDCMLQRGFRDQVMQIFRAISLP-QILMYSATISQEVEKMSSSISKD--IVVVSVGKPNMPNKAVKQLAIWVESNK 365 (533)
Q Consensus 289 VvDEah~~~~~~~~~~i~~i~~~~~~~-q~i~~SAT~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~i~~~~~~~~~~~ 365 (533)
|+||||++++..|...+..+++.++.+ |+++||||+.+.+..+....... ...+.........+...|.++.++...
T Consensus 158 VlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~v 237 (442)
T KOG0340|consen 158 VLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDV 237 (442)
T ss_pred EecchhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhh
Confidence 999999999999999999999999665 99999999999888877665554 344555455566677888899999999
Q ss_pred hHHHHHHHHHhccC-CCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 009512 366 KKQKLFDILMSKQH-FTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGR 444 (533)
Q Consensus 366 k~~~l~~~l~~~~~-~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~ 444 (533)
+...++.+|....+ ..+.++||+++..+|+.|+..|+ ...+++..+|+.|+|.+|...+..|+++..+||||||+++|
T Consensus 238 kdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~-~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsR 316 (442)
T KOG0340|consen 238 KDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLK-NLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASR 316 (442)
T ss_pred hHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHh-hhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhc
Confidence 99999999987665 56789999999999999999998 89999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCC
Q 009512 445 GVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAG 507 (533)
Q Consensus 445 Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~ 507 (533)
|+|||.|+.|||||.|.++.+|+||+||+.|+|+.|.++.|+++.|.+.+..+.+.......+
T Consensus 317 GLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e 379 (442)
T KOG0340|consen 317 GLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTE 379 (442)
T ss_pred CCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999999999999999999888888776654333
No 19
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-60 Score=460.96 Aligned_cols=355 Identities=30% Similarity=0.492 Sum_probs=317.0
Q ss_pred CcccCC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceE
Q 009512 136 SFSSCS--LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 136 ~f~~~~--l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
+|++++ |++++++.+...||..+||+|..+||.++.++|+++.|+||||||++|++|++..+.......+ ...--+
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~--~~~vga 82 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTP--PGQVGA 82 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCC--ccceeE
Confidence 566654 5599999999999999999999999999999999999999999999999999998865322111 112358
Q ss_pred EEEcccHHHHHHHHHHHHHHhcC-CCCeEEEEEcCCchHHHHHHHHc-CCceeecChHHHHHHHHcCC--CCCCCeeEEE
Q 009512 214 MVLTPTRELCIQVEEQAKLLGKG-LPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKHD--IELDDIRMFV 289 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~--~~l~~i~~vV 289 (533)
||++|||||+.||.+.+..|... .++++.+++||......+..+.. +++|+|||||+|.+++.+.. +++.++.++|
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 99999999999999999998877 56899999999999998888764 58899999999999999854 4455999999
Q ss_pred EeccchhhhcchHHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCC--CCccceEEEEEecchhh
Q 009512 290 LDEVDCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNM--PNKAVKQLAIWVESNKK 366 (533)
Q Consensus 290 vDEah~~~~~~~~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~k 366 (533)
+||||+++++||..++..|++.+| .+++=+||||...++.++....+.+++.+++..... ++......+..+....|
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 999999999999999999999994 577889999999999999999999999999988765 66677888888999999
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhh-cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q 009512 367 KQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT-TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRG 445 (533)
Q Consensus 367 ~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~-~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~G 445 (533)
...++++|.. ....++|||++|-..++..+..+... ....+..+||.|.+..|..++..|.+..-.||+|||+++||
T Consensus 243 ~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 243 LSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 9999999977 34568999999999999999999744 56789999999999999999999999888999999999999
Q ss_pred CCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHH
Q 009512 446 VELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLF 494 (533)
Q Consensus 446 ldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~ 494 (533)
||||++++||.||+|.+++.|+||.||++|+|+.|.|++|+.+.+..|.
T Consensus 321 lDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYv 369 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYV 369 (567)
T ss_pred CCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHH
Confidence 9999999999999999999999999999999999999999999665443
No 20
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3e-61 Score=469.15 Aligned_cols=361 Identities=27% Similarity=0.491 Sum_probs=328.8
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCce
Q 009512 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
....|++..|++..+++++.+||..+|++|...|+.++.|+|+++.|.||||||++|++|++.++...++.. ..+-.
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~---r~~~~ 156 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP---RNGTG 156 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC---CCCee
Confidence 345688899999999999999999999999999999999999999999999999999999999998765533 35667
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcCC-CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcC-CCCCCCeeEEEE
Q 009512 213 AMVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-DIELDDIRMFVL 290 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~i~~vVv 290 (533)
+||++|||+||.|++.+++++.... .+.+..+.||........++.++++|+|||||+|++++++. .+...+++++|+
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvl 236 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVL 236 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEe
Confidence 9999999999999999999999988 79999999999999988999999999999999999999984 445667789999
Q ss_pred eccchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcC-CeEEEEeCCC--CCCCccceEEEEEecchhh
Q 009512 291 DEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISK-DIVVVSVGKP--NMPNKAVKQLAIWVESNKK 366 (533)
Q Consensus 291 DEah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~--~~~~~~i~~~~~~~~~~~k 366 (533)
||||+++++||+..+..|+..+ ..+|+++||||.+.++++++...+. ++..+...+. ..+...+.|.+...+...+
T Consensus 237 DEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~ 316 (543)
T KOG0342|consen 237 DEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSR 316 (543)
T ss_pred ecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccch
Confidence 9999999999999999999999 5689999999999999999987765 4777777654 3455778898888888888
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccC
Q 009512 367 KQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGV 446 (533)
Q Consensus 367 ~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gl 446 (533)
...++.+|...... .+++|||+|...+.+++..|. ..++++..+||+++|..|..+...|++.+.-|||||++++||+
T Consensus 317 f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~-~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGl 394 (543)
T KOG0342|consen 317 FSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLN-YIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGL 394 (543)
T ss_pred HHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHh-hcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccC
Confidence 88888888776553 689999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHH
Q 009512 447 ELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELV 498 (533)
Q Consensus 447 di~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~ 498 (533)
|+|+|++||.||+|.+.++|+||+||+||.|..|.+++|+.+.+..+++.|.
T Consensus 395 D~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 395 DIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred CCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999887666654
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.2e-60 Score=506.54 Aligned_cols=361 Identities=28% Similarity=0.505 Sum_probs=327.4
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceE
Q 009512 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
..+|.+++|++.+++.|.+.||.+|+|+|.++||.++.|+|+|++||||||||++|++|++..+.. ...++++
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~-------~~~~~~~ 77 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDP-------ELKAPQI 77 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhh-------ccCCCeE
Confidence 346999999999999999999999999999999999999999999999999999999999987653 1345789
Q ss_pred EEEcccHHHHHHHHHHHHHHhcCC-CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEec
Q 009512 214 MVLTPTRELCIQVEEQAKLLGKGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDE 292 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDE 292 (533)
|||+||++||.|+.+.++.+...+ ++.++.++||.....+...+..+++|+|+||++|++++.+..+.++++++||+||
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDE 157 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDE 157 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEecc
Confidence 999999999999999999987665 6889999999998888888888999999999999999999888999999999999
Q ss_pred cchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHH
Q 009512 293 VDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 371 (533)
Q Consensus 293 ah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 371 (533)
||+|++++|...+..++..+ ...|+++||||+|..+..+...++.++..+.+.........+.+.+..+....|...|.
T Consensus 158 Ad~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~ 237 (629)
T PRK11634 158 ADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALV 237 (629)
T ss_pred HHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHH
Confidence 99999999999999999998 46799999999999999999999998888877766666667788887777777888888
Q ss_pred HHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCc
Q 009512 372 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 451 (533)
Q Consensus 372 ~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v 451 (533)
.++... ...++||||+++..++.++..|. ..++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++
T Consensus 238 ~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~-~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V 314 (629)
T PRK11634 238 RFLEAE--DFDAAIIFVRTKNATLEVAEALE-RNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERI 314 (629)
T ss_pred HHHHhc--CCCCEEEEeccHHHHHHHHHHHH-hCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccC
Confidence 887543 24589999999999999999998 789999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhc
Q 009512 452 RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 452 ~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~ 504 (533)
++||+||+|.+.+.|+||+||+||.|+.|.|++|+++.+...++.+.+.++..
T Consensus 315 ~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~ 367 (629)
T PRK11634 315 SLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 (629)
T ss_pred CEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999998887777776655443
No 22
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-62 Score=452.46 Aligned_cols=370 Identities=30% Similarity=0.497 Sum_probs=344.8
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceE
Q 009512 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
-..|+++.|..+++..+...||+.|+|+|.++||.+++|+|+|+-|..|+|||.+|++|+++.+.. ....-.+
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~-------~~~~IQ~ 156 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDP-------KKNVIQA 156 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCc-------cccceeE
Confidence 457999999999999999999999999999999999999999999999999999999999987753 2345679
Q ss_pred EEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEecc
Q 009512 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEa 293 (533)
+|++||||||-|+...++++++.+++++....||.+..+.+.++.+.++++|+|||+++++..++...+++..++|+|||
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred chhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHH
Q 009512 294 DCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFD 372 (533)
Q Consensus 294 h~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 372 (533)
|.+++..|.+.+..++..+ +.+|++++|||+|-.+..+..+++.+|..+..-+ +.+...+.|++.++.+..|..-|-.
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~-eLtl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLME-ELTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhh-hhhhcchhhheeeechhhhhhhHHH
Confidence 9999999999999999999 5789999999999999999999999999998755 5677789999999999998877666
Q ss_pred HHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCcc
Q 009512 373 ILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVR 452 (533)
Q Consensus 373 ~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~ 452 (533)
++...+- ...||||||...++.||+.+. ..|+.+.++|+.|.|+.|..++..|++|.++.||||+.+.||||+++++
T Consensus 316 LfskLqI--NQsIIFCNS~~rVELLAkKIT-elGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavN 392 (459)
T KOG0326|consen 316 LFSKLQI--NQSIIFCNSTNRVELLAKKIT-ELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVN 392 (459)
T ss_pred HHHHhcc--cceEEEeccchHhHHHHHHHH-hccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceee
Confidence 6655432 368999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCCCCHHHHh
Q 009512 453 QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELIN 514 (533)
Q Consensus 453 ~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l~~ 514 (533)
+|||||+|.+.+.|+|||||+||.|+.|.|+.+++-+|+..+..+.+-|-.....+|+.+-.
T Consensus 393 vVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~iDk 454 (459)
T KOG0326|consen 393 VVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNIDK 454 (459)
T ss_pred EEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999865543
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=2.5e-59 Score=488.50 Aligned_cols=363 Identities=31% Similarity=0.515 Sum_probs=323.3
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEE
Q 009512 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 215 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Li 215 (533)
+|+++++++.+++.|...||..|+++|.++|+.++.|+|++++||||+|||++|++|++.++..... .....+++||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~---~~~~~~~~li 78 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR---RKSGPPRILI 78 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc---cCCCCceEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999875322 1234578999
Q ss_pred EcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccch
Q 009512 216 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 295 (533)
Q Consensus 216 l~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~ 295 (533)
++||++|+.|+.+++..+....++++..++||.....+...+..+++|+|+||++|++++....+.+.++++||+||||+
T Consensus 79 l~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~ 158 (434)
T PRK11192 79 LTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADR 158 (434)
T ss_pred ECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHH
Confidence 99999999999999999999889999999999998888777778899999999999999999888899999999999999
Q ss_pred hhhcchHHHHHHHHHhC-CCCcEEEecccCcH-HHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecc-hhhHHHHHH
Q 009512 296 MLQRGFRDQVMQIFRAI-SLPQILMYSATISQ-EVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES-NKKKQKLFD 372 (533)
Q Consensus 296 ~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~-~~k~~~l~~ 372 (533)
|++++|...+..+...+ ...|+++||||++. .+..+...++.+++.+...........+.+.+...+. ..+...+..
T Consensus 159 ~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 238 (434)
T PRK11192 159 MLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCH 238 (434)
T ss_pred HhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHH
Confidence 99999999999998877 45789999999985 5788888888888888776666666667777766664 344455555
Q ss_pred HHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCcc
Q 009512 373 ILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVR 452 (533)
Q Consensus 373 ~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~ 452 (533)
++.. ....++||||+++..++.++..|. ..++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 239 l~~~--~~~~~~lVF~~s~~~~~~l~~~L~-~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 239 LLKQ--PEVTRSIVFVRTRERVHELAGWLR-KAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHhc--CCCCeEEEEeCChHHHHHHHHHHH-hCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC
Confidence 5532 235689999999999999999998 7899999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhc
Q 009512 453 QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 453 ~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~ 504 (533)
+||+||+|.|.+.|+||+||+||.|..|.+++|++..+...+..+.+++...
T Consensus 316 ~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~ 367 (434)
T PRK11192 316 HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEP 367 (434)
T ss_pred EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999998888888777653
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-58 Score=487.36 Aligned_cols=379 Identities=29% Similarity=0.511 Sum_probs=334.1
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCce
Q 009512 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
....|.+++|++.+.+.|.+.||..|+++|.++|+.++.|+|+++.+|||||||++|++|++..+...+.........++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 34578899999999999999999999999999999999999999999999999999999999998764322111123578
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHH-cCCceeecChHHHHHHHHcCCCCCCCeeEEEEe
Q 009512 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLD 291 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvD 291 (533)
+|||+||++|+.|+.+.++.+.+..++++..++||.....+...+. ..++|+|+||++|++++.+....++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 9999999999999999999999888899999999988877777665 458999999999999998888889999999999
Q ss_pred ccchhhhcchHHHHHHHHHhCC---CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHH
Q 009512 292 EVDCMLQRGFRDQVMQIFRAIS---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQ 368 (533)
Q Consensus 292 Eah~~~~~~~~~~i~~i~~~~~---~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 368 (533)
|||++++++|...+..++..++ ..|++++|||++..+..++..+..++..+.+.........+.+.+..+....+..
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~ 324 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYK 324 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHH
Confidence 9999999999999999998874 4699999999999999999999988888777666666666777777777777777
Q ss_pred HHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC
Q 009512 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL 448 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi 448 (533)
.+..++... ...++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|+++|||||+++++|||+
T Consensus 325 ~l~~ll~~~--~~~~~IVF~~s~~~~~~l~~~L~-~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 325 LLYNLVTQN--PWERVMVFANRKDEVRRIEERLV-KDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHH-HcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 777776543 34589999999999999999998 788999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcC-CCCC-HHHHh
Q 009512 449 LGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSG-AGIP-RELIN 514 (533)
Q Consensus 449 ~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~-~~~p-~~l~~ 514 (533)
|++++||+|++|.|..+|+||+||+||.|..|.+++|++++|..++..+.+++.... .++| .+|+.
T Consensus 402 ~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T PRK01297 402 DGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKISCEMPPAELLK 469 (475)
T ss_pred cCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCcccCCcHHHhh
Confidence 999999999999999999999999999999999999999999888999988887664 3444 45554
No 25
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-59 Score=460.62 Aligned_cols=372 Identities=28% Similarity=0.491 Sum_probs=336.2
Q ss_pred CHHHHHHHHhhcC-ceEecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009512 110 TIGQTDSLRKRLE-INVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 110 ~~~~~~~~~~~~~-i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~ 188 (533)
..+.++++..++. +. ...+..|++++++....+.|+.++|..||.+|.++||..+.|+|+|..|.||||||++
T Consensus 49 Eee~i~~l~~ky~ei~------~~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLA 122 (758)
T KOG0343|consen 49 EEEEIEELKQKYAEID------STTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLA 122 (758)
T ss_pred hHHHHHHHHHHHHHhh------hhhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceee
Confidence 3445566655543 21 2356689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecCh
Q 009512 189 FLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTP 268 (533)
Q Consensus 189 ~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp 268 (533)
|++|++.++...+|.. ..|--+|||.||||||.|+++.+.++++...+...++.||........++. +.+|+||||
T Consensus 123 FlvPvlE~L~r~kWs~---~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTP 198 (758)
T KOG0343|consen 123 FLVPVLEALYRLKWSP---TDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTP 198 (758)
T ss_pred ehHHHHHHHHHcCCCC---CCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEech
Confidence 9999999998877643 456679999999999999999999999999999999999999888777764 499999999
Q ss_pred HHHHHHHHcC-CCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCC
Q 009512 269 GRLIDLLMKH-DIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGK 346 (533)
Q Consensus 269 ~~l~~~l~~~-~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 346 (533)
|+|+.++... .++..++.++|+||||+|++|||..++..|++.+ +.+|+++||||....+..+++.-+.+|.++++..
T Consensus 199 GRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe 278 (758)
T KOG0343|consen 199 GRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHE 278 (758)
T ss_pred HHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEec
Confidence 9999999874 5678899999999999999999999999999999 5689999999999999999999999998888874
Q ss_pred C--CCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHH-hhcCCeEEEEcCCCCHHHHHH
Q 009512 347 P--NMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAIS-VTTGMKALSIHGEKPMKERRE 423 (533)
Q Consensus 347 ~--~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~-~~~~~~~~~ih~~~~~~~r~~ 423 (533)
. ...+.+..|.+..++...|...|..++..+. ..+.|||+.|.+++.+++..++ .+.|++...+||.|+|..|..
T Consensus 279 ~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~e 356 (758)
T KOG0343|consen 279 NAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIE 356 (758)
T ss_pred cccccChhhhhheEEEEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHH
Confidence 3 5677889999999999999999999997754 4689999999999999999996 356899999999999999999
Q ss_pred HHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHH
Q 009512 424 IMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNL 493 (533)
Q Consensus 424 ~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~ 493 (533)
+...|.....-||+||++++||+|+|.|++||.+|.|.++++|+||+||+.|.+..|.+++++.+.+.+.
T Consensus 357 v~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 357 VYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred HHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988543
No 26
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-59 Score=457.33 Aligned_cols=363 Identities=29% Similarity=0.492 Sum_probs=315.3
Q ss_pred ccCcccCCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCce
Q 009512 134 ILSFSSCSLSQKLLQNIEAA-GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~-g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
-..|..+||++.+...|... ++..||.+|.++||.++.|+|++|.++||||||++|++|++.++........ +..|+.
T Consensus 135 s~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~-Rs~G~~ 213 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ-RSDGPY 213 (708)
T ss_pred cccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc-ccCCce
Confidence 34688999999999999875 9999999999999999999999999999999999999999999987654433 567899
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcCCC-CeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHc-CCCCCCCeeEEEE
Q 009512 213 AMVLTPTRELCIQVEEQAKLLGKGLP-FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIELDDIRMFVL 290 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~i~~vVv 290 (533)
+||++||||||.|+++.+.++.+.+- +-...+.||+.......++++|++|+|+|||+|++++.+ ..+.++.+.+||+
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 99999999999999999999987643 344678999999999999999999999999999999987 5677899999999
Q ss_pred eccchhhhcchHHHHHHHHHhCC--------------CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCC---------
Q 009512 291 DEVDCMLQRGFRDQVMQIFRAIS--------------LPQILMYSATISQEVEKMSSSISKDIVVVSVGKP--------- 347 (533)
Q Consensus 291 DEah~~~~~~~~~~i~~i~~~~~--------------~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~--------- 347 (533)
||+|++++.||+..+..|+..+. ..|.+++|||+.+.+..++..-+.+|+.|+.+..
T Consensus 294 DEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 294 DEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDK 373 (708)
T ss_pred cchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchh
Confidence 99999999999999999998771 2578999999999999999999999999882211
Q ss_pred ----------------CCCCccceEEEEEecchhhHHHHHHHHHhccC--CCCCEEEEEcCcccHHHHHHHHHhh-----
Q 009512 348 ----------------NMPNKAVKQLAIWVESNKKKQKLFDILMSKQH--FTPPAVVYVGSRLGADLLSNAISVT----- 404 (533)
Q Consensus 348 ----------------~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~--~~~~~lIF~~s~~~~~~l~~~l~~~----- 404 (533)
...++...|.+..++...+.-.|..+|..... ...++|||+.+.+.+++-+..|...
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~ 453 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL 453 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc
Confidence 12234455677777777777777777766432 2347899999999999988888622
Q ss_pred ----------------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHH
Q 009512 405 ----------------TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVH 468 (533)
Q Consensus 405 ----------------~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~q 468 (533)
.+.++.-+||+|+|++|..+++.|....-.||+|||+++||||+|.|++||.||+|.+.++|+|
T Consensus 454 e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylH 533 (708)
T KOG0348|consen 454 EGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLH 533 (708)
T ss_pred ccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHH
Confidence 2345778999999999999999999998899999999999999999999999999999999999
Q ss_pred hhcccCCCCCccEEEEEecCcCHHHHHHH
Q 009512 469 QIGRASQMGDEGTAIVFVNEENKNLFQEL 497 (533)
Q Consensus 469 riGR~gR~g~~g~~~~l~~~~~~~~~~~l 497 (533)
|+||+.|+|..|.+++|+.+.+.+++..+
T Consensus 534 RvGRTARaG~kG~alLfL~P~Eaey~~~l 562 (708)
T KOG0348|consen 534 RVGRTARAGEKGEALLFLLPSEAEYVNYL 562 (708)
T ss_pred HhhhhhhccCCCceEEEecccHHHHHHHH
Confidence 99999999999999999999998754443
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.4e-56 Score=464.20 Aligned_cols=369 Identities=30% Similarity=0.564 Sum_probs=324.5
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceE
Q 009512 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
..+|+++++++.+.++|.+.||..|+|+|.++|+.++.|+|++++||||||||++|++|++..+.. ...++++
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~-------~~~~~~~ 99 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY-------DLNACQA 99 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC-------CCCCceE
Confidence 467999999999999999999999999999999999999999999999999999999999987642 1246789
Q ss_pred EEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEecc
Q 009512 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEa 293 (533)
||++||++|+.|+.+.+..++...+..+..+.||.....+...+..+++|+|+||++|.+++.+....++++++||+|||
T Consensus 100 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEa 179 (401)
T PTZ00424 100 LILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEA 179 (401)
T ss_pred EEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecH
Confidence 99999999999999999999888788888899998888888888888999999999999999988888999999999999
Q ss_pred chhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchh-hHHHHH
Q 009512 294 DCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK-KKQKLF 371 (533)
Q Consensus 294 h~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~ 371 (533)
|++.+.+|...+..++.++ +..|++++|||+|+.+..+...++.++..+.+.........+.+.+....... +...+.
T Consensus 180 h~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 180 DEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHH
Confidence 9999999998888888887 56899999999999999888888888777666555555556666666555432 444455
Q ss_pred HHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCc
Q 009512 372 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 451 (533)
Q Consensus 372 ~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v 451 (533)
.++... ...++||||+++..++.++..|. ..++.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++
T Consensus 260 ~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~-~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v 336 (401)
T PTZ00424 260 DLYETL--TITQAIIYCNTRRKVDYLTKKMH-ERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQV 336 (401)
T ss_pred HHHHhc--CCCeEEEEecCcHHHHHHHHHHH-HCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccC
Confidence 554332 24579999999999999999998 678999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCCCCHHH
Q 009512 452 RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPREL 512 (533)
Q Consensus 452 ~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l 512 (533)
++||+||+|.|...|+||+||+||.|+.|.|++|+++.+...+..+.+.+.....+.|...
T Consensus 337 ~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~~~~ 397 (401)
T PTZ00424 337 SLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMPMEV 397 (401)
T ss_pred CEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccCcch
Confidence 9999999999999999999999999999999999999999999999888877666666443
No 28
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-57 Score=431.04 Aligned_cols=367 Identities=26% Similarity=0.438 Sum_probs=326.0
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEE
Q 009512 135 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
.+|++++|++.+++++.+.||..||-+|+.+||.++.|+|+++.|.||||||++|++|++..++..+... ....++.++
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~-~~e~~~sa~ 97 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN-DGEQGPSAV 97 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc-cccccceeE
Confidence 5899999999999999999999999999999999999999999999999999999999999999865543 456789999
Q ss_pred EEcccHHHHHHHHHHHHHHhcCCC--CeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCC-CCCCCeeEEEEe
Q 009512 215 VLTPTRELCIQVEEQAKLLGKGLP--FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD-IELDDIRMFVLD 291 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~-~~l~~i~~vVvD 291 (533)
|++||+|||+|++..+.++....+ ++++.+....+.......+...++|+|+||++++.++..+. ..+..++++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 999999999999999988876544 56666665555555556677789999999999999999877 678899999999
Q ss_pred ccchhhhcchHHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCC-ccceEEEEEecchhhHHH
Q 009512 292 EVDCMLQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPN-KAVKQLAIWVESNKKKQK 369 (533)
Q Consensus 292 Eah~~~~~~~~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~~~~~~~~~~~k~~~ 369 (533)
|||.++..||+..+..+.++++ ..|.++||||+.+++..+.+.++.+|+.+...+.+.++ ..+.|+...+.+.+|...
T Consensus 178 EADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfll 257 (569)
T KOG0346|consen 178 EADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLL 257 (569)
T ss_pred hhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHH
Confidence 9999999999999999999995 46999999999999999999999999999988877664 556788888888888777
Q ss_pred HHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec---------
Q 009512 370 LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG--------- 440 (533)
Q Consensus 370 l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~--------- 440 (533)
++.++.-. .-.+++|||+|+...|..|.-.|. .+|++...++|.++...|-.++++|+.|-++++||||
T Consensus 258 lyallKL~-LI~gKsliFVNtIdr~YrLkLfLe-qFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~e 335 (569)
T KOG0346|consen 258 LYALLKLR-LIRGKSLIFVNTIDRCYRLKLFLE-QFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLE 335 (569)
T ss_pred HHHHHHHH-HhcCceEEEEechhhhHHHHHHHH-HhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhh
Confidence 77666433 335689999999999999999998 8999999999999999999999999999999999999
Q ss_pred --------------------------cccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHH
Q 009512 441 --------------------------ILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLF 494 (533)
Q Consensus 441 --------------------------~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~ 494 (533)
-.+||||+..|.+|||||+|.+...|+||+||++|++++|.++.|+.+.+..-.
T Consensus 336 ee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~ 415 (569)
T KOG0346|consen 336 EEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGK 415 (569)
T ss_pred ccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhh
Confidence 146999999999999999999999999999999999999999999999887766
Q ss_pred HHHHHHHHhc
Q 009512 495 QELVDILKSS 504 (533)
Q Consensus 495 ~~l~~~l~~~ 504 (533)
..+...++..
T Consensus 416 ~~le~~~~d~ 425 (569)
T KOG0346|consen 416 ESLESILKDE 425 (569)
T ss_pred hHHHHHHhhH
Confidence 6666666654
No 29
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-57 Score=447.67 Aligned_cols=401 Identities=31% Similarity=0.544 Sum_probs=351.8
Q ss_pred HHHHHHhhcCceEecCCCCCcccCccc----CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009512 113 QTDSLRKRLEINVKGDAVPAPILSFSS----CSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 113 ~~~~~~~~~~i~~~~~~~p~~~~~f~~----~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~ 188 (533)
.....|+.+.+.+.|..+|.|+.+|.+ ......+++++...||..|+|+|++++|.++.+++++.|||||||||++
T Consensus 110 ~~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtla 189 (593)
T KOG0344|consen 110 KLLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLA 189 (593)
T ss_pred ccccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhh
Confidence 334557778899999999999999997 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh--cCCCCeEEEEEcCCchH-HHHHHHHcCCceee
Q 009512 189 FLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG--KGLPFKTALVVGGDAMA-RQVYRIQQGVELIV 265 (533)
Q Consensus 189 ~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~--~~~~~~~~~~~gg~~~~-~~~~~l~~~~~Iiv 265 (533)
|.+|++.++..... .....+-+++|+.||++|+.|++.++.++. .+.+++........... +........++|++
T Consensus 190 f~~Pil~~L~~~~~--~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili 267 (593)
T KOG0344|consen 190 FNLPILQHLKDLSQ--EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILI 267 (593)
T ss_pred hhhHHHHHHHHhhc--ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHh
Confidence 99999999876432 223457789999999999999999999998 55555554443332111 11122234589999
Q ss_pred cChHHHHHHHHcCC--CCCCCeeEEEEeccchhhhc-chHHHHHHHHHhC--CCCcEEEecccCcHHHHHHHHhhcCCeE
Q 009512 266 GTPGRLIDLLMKHD--IELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSSISKDIV 340 (533)
Q Consensus 266 ~Tp~~l~~~l~~~~--~~l~~i~~vVvDEah~~~~~-~~~~~i~~i~~~~--~~~q~i~~SAT~~~~~~~~~~~~~~~~~ 340 (533)
.||-++...+.... +.+..+.++|+||+|++++. .|..|+..|++.. ++..+=+||||++..+++|+.....++.
T Consensus 268 ~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~ 347 (593)
T KOG0344|consen 268 STPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLK 347 (593)
T ss_pred cCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccce
Confidence 99999999888765 67899999999999999999 8999999999988 5556779999999999999999999999
Q ss_pred EEEeCCCCCCCccceEEEEEecch-hhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHH
Q 009512 341 VVSVGKPNMPNKAVKQLAIWVESN-KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMK 419 (533)
Q Consensus 341 ~i~~~~~~~~~~~i~~~~~~~~~~-~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~ 419 (533)
.+.++..+.....+.|...++... .|.-.+.+++.. ...+|+|||+.+.+.|..|...|....++.+..+||+.++.
T Consensus 348 ~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~--g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~ 425 (593)
T KOG0344|consen 348 RVIVGLRNSANETVDQELVFCGSEKGKLLALRQLVAS--GFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQK 425 (593)
T ss_pred eEEEecchhHhhhhhhhheeeecchhHHHHHHHHHhc--cCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchh
Confidence 999999999988898888877654 566666666654 36789999999999999999999547899999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHH
Q 009512 420 ERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 420 ~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~ 499 (533)
+|.+.++.|+.|++.|||||++++||+|+.++++|||||.|.+...|+|||||+||+|+.|.|++|++..+..+.+.+.+
T Consensus 426 qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 426 QRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred HHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCHHHHhchh
Q 009512 500 ILKSSGAGIPRELINSRY 517 (533)
Q Consensus 500 ~l~~~~~~~p~~l~~~~~ 517 (533)
.++.+|.++|.+.+.+..
T Consensus 506 ~~~~sG~evpe~~m~~~k 523 (593)
T KOG0344|consen 506 VMEQSGCEVPEKIMGIKK 523 (593)
T ss_pred HHHHcCCcchHHHHhhhh
Confidence 999999999999998874
No 30
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-57 Score=446.72 Aligned_cols=371 Identities=24% Similarity=0.444 Sum_probs=309.6
Q ss_pred CCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhh------
Q 009512 130 VPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRL------ 202 (533)
Q Consensus 130 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g-~~vli~a~TGsGKT~~~llp~l~~l~~~~~------ 202 (533)
.+..+..|.++++|..++.+|...||..||++|...||++..| .|+|..|.||||||++|.+|++..+.....
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3456778999999999999999999999999999999999998 699999999999999999999995543211
Q ss_pred cccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCC--
Q 009512 203 HHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI-- 280 (533)
Q Consensus 203 ~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~-- 280 (533)
........+.+||++||||||.|+...+..+....++++..++||.....|-.-+...++|+|||||+|+.++.....
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 011222334599999999999999999999999999999999999999999888889999999999999999987654
Q ss_pred -CCCCeeEEEEeccchhhhcchHHHHHHHHHhC------CCCcEEEecccCcH---------------------HHHHHH
Q 009512 281 -ELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI------SLPQILMYSATISQ---------------------EVEKMS 332 (533)
Q Consensus 281 -~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~------~~~q~i~~SAT~~~---------------------~~~~~~ 332 (533)
+++.+.++|+||+|+|++.|....+..++..+ ..+|++.||||+.- .++.+.
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 57788999999999999999888888888887 45799999999742 122333
Q ss_pred Hh--hcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEE
Q 009512 333 SS--ISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKAL 410 (533)
Q Consensus 333 ~~--~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~ 410 (533)
.. +..+|.+++..........+....+.++...|...|+-+|. .+.+++|||||+..-+..|+-+|. ..+++..
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~---ryPGrTlVF~NsId~vKRLt~~L~-~L~i~p~ 491 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLT---RYPGRTLVFCNSIDCVKRLTVLLN-NLDIPPL 491 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEe---ecCCceEEEechHHHHHHHHHHHh-hcCCCCc
Confidence 32 23345555554443333333333333333333333333332 235799999999999999999998 8999999
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcC
Q 009512 411 SIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 490 (533)
Q Consensus 411 ~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~ 490 (533)
.+|+.|.|.+|..-++.|++..-.||||||+++||||||+|.|||||..|.+.+.|+||.||+.|++..|..+.|+.+.+
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 009512 491 KNLFQELVDILKSS 504 (533)
Q Consensus 491 ~~~~~~l~~~l~~~ 504 (533)
...+.+|.+.|+..
T Consensus 572 ~~~~~KL~ktL~k~ 585 (731)
T KOG0347|consen 572 VGPLKKLCKTLKKK 585 (731)
T ss_pred hHHHHHHHHHHhhc
Confidence 99999999999885
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-53 Score=404.95 Aligned_cols=368 Identities=32% Similarity=0.586 Sum_probs=340.6
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceE
Q 009512 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
+.+|++++|++.|++.+...||.+|+.+|+.||..+..|.|+++.+++|+|||.+|.++++.++.. ......+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~-------~~ke~qa 97 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM-------SVKETQA 97 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc-------chHHHHH
Confidence 348999999999999999999999999999999999999999999999999999999999988642 1234569
Q ss_pred EEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHH-cCCceeecChHHHHHHHHcCCCCCCCeeEEEEec
Q 009512 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDE 292 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDE 292 (533)
|+++|||+|+.|+......++...+.++..+.||.....+...+. .+++|+++|||++.+++.+..+..+.++++|+||
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDE 177 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDE 177 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecc
Confidence 999999999999999999999999999999999988886555554 4589999999999999999988889999999999
Q ss_pred cchhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHH
Q 009512 293 VDCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLF 371 (533)
Q Consensus 293 ah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 371 (533)
+|.|+..||..++..+++++ ++.|++++|||+|.++......++.+|+.+.+.....+.+.++|++..+....|...|.
T Consensus 178 aDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~ 257 (397)
T KOG0327|consen 178 ADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLC 257 (397)
T ss_pred hHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHH
Confidence 99999999999999999999 56799999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCc
Q 009512 372 DILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV 451 (533)
Q Consensus 372 ~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v 451 (533)
++..+ -...+||||+++.++.+...|. ..++.+..+||+|.+.+|..+++.|+.|..+|||+|+.++||+|+..+
T Consensus 258 dl~~~----~~q~~if~nt~r~v~~l~~~L~-~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~ 332 (397)
T KOG0327|consen 258 DLYRR----VTQAVIFCNTRRKVDNLTDKLR-AHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQV 332 (397)
T ss_pred HHHHh----hhcceEEecchhhHHHHHHHHh-hCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhc
Confidence 88772 3468999999999999999996 899999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCCCCHHHH
Q 009512 452 RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELI 513 (533)
Q Consensus 452 ~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l~ 513 (533)
..||||++|.....|+||+||+||.|.+|.++.|+.+.+...++++.+++.-...++|....
T Consensus 333 slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~~~ 394 (397)
T KOG0327|consen 333 SLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSNFA 394 (397)
T ss_pred ceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccchh
Confidence 99999999999999999999999999999999999999999999999988888777775543
No 32
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-54 Score=409.91 Aligned_cols=363 Identities=28% Similarity=0.474 Sum_probs=338.8
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceE
Q 009512 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
--.|++++|+..+.+++.+.||..|||+|+..+|.++.+++++..|-||||||.+|++|++.++... ...+-++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~------s~~g~Ra 93 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSH------SQTGLRA 93 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhc------cccccce
Confidence 4579999999999999999999999999999999999999999999999999999999999998752 2567899
Q ss_pred EEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEecc
Q 009512 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEa 293 (533)
|++.||++|+.|..+..+.+++..+++..+++||+...+|+..+..+.+||+|||+++..+.-.-.+.|+.+.|||+||+
T Consensus 94 lilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEa 173 (529)
T KOG0337|consen 94 LILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEA 173 (529)
T ss_pred eeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhh
Confidence 99999999999999999999999999999999999999999999999999999999998888777788999999999999
Q ss_pred chhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHH
Q 009512 294 DCMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFD 372 (533)
Q Consensus 294 h~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 372 (533)
|+++.+||.+++..++.++ ...|+++||||+|+.+..+++..+.+|..+.........+..+..+..+...+|...|+.
T Consensus 174 drlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~ 253 (529)
T KOG0337|consen 174 DRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLS 253 (529)
T ss_pred hHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHH
Confidence 9999999999999999999 467999999999999999999999999988877777777777778888888999999999
Q ss_pred HHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCcc
Q 009512 373 ILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVR 452 (533)
Q Consensus 373 ~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~ 452 (533)
++..... +.+++|||.++.+++.+...|+ ..|+.+..++|.+.+.-|..-+..|+.++..+||.|++++||+|||-.+
T Consensus 254 il~~~~~-~~~t~vf~~tk~hve~~~~ll~-~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplld 331 (529)
T KOG0337|consen 254 ILGGRIK-DKQTIVFVATKHHVEYVRGLLR-DFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLD 331 (529)
T ss_pred HHhcccc-ccceeEEecccchHHHHHHHHH-hcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccc
Confidence 8877654 4589999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhc
Q 009512 453 QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSS 504 (533)
Q Consensus 453 ~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~ 504 (533)
.|||||.|.+...|+||+||+.|+|+.|++|.|+.+++..++-+|--++-+.
T Consensus 332 nvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~ 383 (529)
T KOG0337|consen 332 NVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRP 383 (529)
T ss_pred ccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCc
Confidence 9999999999999999999999999999999999999999998887777664
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=7.7e-52 Score=451.30 Aligned_cols=345 Identities=22% Similarity=0.325 Sum_probs=272.1
Q ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccH
Q 009512 141 SLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 220 (533)
Q Consensus 141 ~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 220 (533)
.+++.+.+.|.+.||..||++|.++|+.++.|+|+++++|||||||++|++|++..+.. ..+.++|||+||+
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~--------~~~~~aL~l~Ptr 91 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD--------DPRATALYLAPTK 91 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh--------CCCcEEEEEcChH
Confidence 48999999999999999999999999999999999999999999999999999998864 3467899999999
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcC----CCCCCCeeEEEEeccchh
Q 009512 221 ELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH----DIELDDIRMFVLDEVDCM 296 (533)
Q Consensus 221 ~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~----~~~l~~i~~vVvDEah~~ 296 (533)
+|+.|+...++++. ..++++..+.|+.+ ..+...+..+++|+|+||++|...+... ...++++++||+||||++
T Consensus 92 aLa~q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~ 169 (742)
T TIGR03817 92 ALAADQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSY 169 (742)
T ss_pred HHHHHHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhc
Confidence 99999999999987 34567666555554 5555667778999999999997543321 123788999999999999
Q ss_pred hhcchHHHHHHHHHhC--------CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecc-----
Q 009512 297 LQRGFRDQVMQIFRAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES----- 363 (533)
Q Consensus 297 ~~~~~~~~i~~i~~~~--------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~----- 363 (533)
.+ .|+..+..+++++ ..+|++++|||+++..+ ++..+...++.+ +.....+.. ..+...|...
T Consensus 170 ~g-~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~-~~~~~~~~p~~~~~~ 245 (742)
T TIGR03817 170 RG-VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRG-ARTVALWEPPLTELT 245 (742)
T ss_pred cC-ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcC-ceEEEEecCCccccc
Confidence 76 4777776666654 45799999999998755 555666655443 222222222 2223333221
Q ss_pred ------------hhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhh-------cCCeEEEEcCCCCHHHHHHH
Q 009512 364 ------------NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT-------TGMKALSIHGEKPMKERREI 424 (533)
Q Consensus 364 ------------~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~-------~~~~~~~ih~~~~~~~r~~~ 424 (533)
..+...+..++. .+.++||||+|+..++.++..++.. .+..+..+||++++++|..+
T Consensus 246 ~~~~~~~r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~i 321 (742)
T TIGR03817 246 GENGAPVRRSASAEAADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRREL 321 (742)
T ss_pred cccccccccchHHHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHH
Confidence 122333334432 3568999999999999999998732 15678899999999999999
Q ss_pred HHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCc--CHHHHHHHHHHHH
Q 009512 425 MRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE--NKNLFQELVDILK 502 (533)
Q Consensus 425 ~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~--~~~~~~~l~~~l~ 502 (533)
++.|++|++++||||+++++||||+++++||+|++|.+...|+||+|||||.|+.|.++++..++ |..++....++++
T Consensus 322 e~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~ 401 (742)
T TIGR03817 322 ERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFD 401 (742)
T ss_pred HHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999998743 4445555555554
Q ss_pred h
Q 009512 503 S 503 (533)
Q Consensus 503 ~ 503 (533)
.
T Consensus 402 ~ 402 (742)
T TIGR03817 402 R 402 (742)
T ss_pred C
Confidence 3
No 34
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-52 Score=391.04 Aligned_cols=375 Identities=26% Similarity=0.496 Sum_probs=322.0
Q ss_pred CCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhccc
Q 009512 128 DAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHS 205 (533)
Q Consensus 128 ~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g--~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~ 205 (533)
+.+--...+|++++|.+++++.+..++|..|+.+|..++|.++.. +++|.++..|+|||.+|.|.++.++.-
T Consensus 83 nsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~------ 156 (477)
T KOG0332|consen 83 NSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP------ 156 (477)
T ss_pred CCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc------
Confidence 333456789999999999999999999999999999999999964 789999999999999999999987642
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHc-CCCCCCC
Q 009512 206 QNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIELDD 284 (533)
Q Consensus 206 ~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~-~~~~l~~ 284 (533)
....|.++.|+|||+||.|.-+.+.+.++..+++..+..-|.....- ..+ ..+|+|+|||.+.+++.+ ..+.+..
T Consensus 157 -~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~id~~k 232 (477)
T KOG0332|consen 157 -DVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCIDLEK 232 (477)
T ss_pred -cccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhhChhh
Confidence 24568899999999999999999999998887787777766521110 001 157999999999999988 7788999
Q ss_pred eeEEEEeccchhhh-cchHHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEec
Q 009512 285 IRMFVLDEVDCMLQ-RGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE 362 (533)
Q Consensus 285 i~~vVvDEah~~~~-~~~~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~ 362 (533)
++.+|+||||.|++ .||..+-..|...++ ..|+++||||+...+..++..+..++..+.+.........+.|++..+.
T Consensus 233 ikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~ 312 (477)
T KOG0332|consen 233 IKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCA 312 (477)
T ss_pred ceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeecc
Confidence 99999999999987 468988889988886 8899999999999999999999999999988888999999999998877
Q ss_pred ch-hhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 009512 363 SN-KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI 441 (533)
Q Consensus 363 ~~-~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~ 441 (533)
.. .|...|.++- ... .-+..||||.++..|..|+..+. ..|+.+..+||+|.-.+|..+++.|+.|..+|||+|++
T Consensus 313 ~~~~K~~~l~~ly-g~~-tigqsiIFc~tk~ta~~l~~~m~-~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV 389 (477)
T KOG0332|consen 313 CRDDKYQALVNLY-GLL-TIGQSIIFCHTKATAMWLYEEMR-AEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNV 389 (477)
T ss_pred chhhHHHHHHHHH-hhh-hhhheEEEEeehhhHHHHHHHHH-hcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEech
Confidence 54 5666666633 322 23579999999999999999998 89999999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEcCCCC------CHhHHHHhhcccCCCCCccEEEEEecCc-CHHHHHHHHHHHHh-cCCCCCHHHH
Q 009512 442 LGRGVELLGVRQVIIFDMPN------SIKEYVHQIGRASQMGDEGTAIVFVNEE-NKNLFQELVDILKS-SGAGIPRELI 513 (533)
Q Consensus 442 ~~~Gldi~~v~~VI~~~~p~------s~~~y~qriGR~gR~g~~g~~~~l~~~~-~~~~~~~l~~~l~~-~~~~~p~~l~ 513 (533)
++||||++.|++|||||+|. +++.|+|||||+||.|+.|.++-|++.. ....+..|.+.... .....|..+.
T Consensus 390 ~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~ 469 (477)
T KOG0332|consen 390 CARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLD 469 (477)
T ss_pred hhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHH
Confidence 99999999999999999994 7899999999999999999999998764 67778888888854 3444555554
Q ss_pred hc
Q 009512 514 NS 515 (533)
Q Consensus 514 ~~ 515 (533)
++
T Consensus 470 E~ 471 (477)
T KOG0332|consen 470 EL 471 (477)
T ss_pred HH
Confidence 43
No 35
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-51 Score=400.67 Aligned_cols=363 Identities=26% Similarity=0.426 Sum_probs=300.3
Q ss_pred cccCcccCCCCHHH----------HHHHHHcCCCCCCHHHHHHHHHHh---------CCCcEEEEccCCCchhHHHHHHH
Q 009512 133 PILSFSSCSLSQKL----------LQNIEAAGYDMPTPVQMQAIPSAL---------SGKSLLVSANTGSGKTASFLVPV 193 (533)
Q Consensus 133 ~~~~f~~~~l~~~l----------~~~l~~~g~~~p~~~Q~~~i~~i~---------~g~~vli~a~TGsGKT~~~llp~ 193 (533)
....|+.++.++.+ .+++.++++....|+|..++|+++ .++|+.|.||||||||++|.+|+
T Consensus 125 slq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPI 204 (620)
T KOG0350|consen 125 SLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPI 204 (620)
T ss_pred ceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHH
Confidence 33445555555544 445889999999999999999996 36899999999999999999999
Q ss_pred HHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcC-----CceeecCh
Q 009512 194 ISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQG-----VELIVGTP 268 (533)
Q Consensus 194 l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-----~~Iiv~Tp 268 (533)
++.+.... -.--++||++||++|+.|++..+.++..+.++.++.+.|..+..+....+.+. .+|+|+||
T Consensus 205 VQ~L~~R~------v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTP 278 (620)
T KOG0350|consen 205 VQLLSSRP------VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATP 278 (620)
T ss_pred HHHHccCC------ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCc
Confidence 98876522 23467999999999999999999999999999999999988888887777653 48999999
Q ss_pred HHHHHHHHc-CCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCC----------------------------------
Q 009512 269 GRLIDLLMK-HDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS---------------------------------- 313 (533)
Q Consensus 269 ~~l~~~l~~-~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~---------------------------------- 313 (533)
|||.+++.+ ..++|++++|+|+||||||++..|..++-.++..+.
T Consensus 279 GRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~ 358 (620)
T KOG0350|consen 279 GRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLY 358 (620)
T ss_pred hHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcC
Confidence 999999995 678999999999999999999888877766665541
Q ss_pred -CCcEEEecccCcHHHHHHHHhhcCCeEEEEeC----CCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEE
Q 009512 314 -LPQILMYSATISQEVEKMSSSISKDIVVVSVG----KPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYV 388 (533)
Q Consensus 314 -~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~ 388 (533)
..+.+.+|||+...-.++...-+..|-.+.+. .....+..+......++...+...++.++.... ..++|+|+
T Consensus 359 ~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k--~~r~lcf~ 436 (620)
T KOG0350|consen 359 PPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNK--LNRTLCFV 436 (620)
T ss_pred chhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhh--cceEEEEe
Confidence 11356788888777777766666666333333 233445555566666666667777778776654 45799999
Q ss_pred cCcccHHHHHHHHH---hhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhH
Q 009512 389 GSRLGADLLSNAIS---VTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKE 465 (533)
Q Consensus 389 ~s~~~~~~l~~~l~---~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~ 465 (533)
+|...+..++..|. ...+..+..+.|++++..|...+..|..|+++||||+|+++||+|+.+++.|||||+|.+...
T Consensus 437 ~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~kt 516 (620)
T KOG0350|consen 437 NSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKT 516 (620)
T ss_pred cchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhH
Confidence 99999999999886 234566677899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHh
Q 009512 466 YVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 466 y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~ 503 (533)
|+||+||++|+|+.|.|+++++..+.+.|.++++....
T Consensus 517 yVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 517 YVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNL 554 (620)
T ss_pred HHHhhcccccccCCceEEEeeccccchHHHHHHHHhcc
Confidence 99999999999999999999999999999888887776
No 36
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.3e-51 Score=406.82 Aligned_cols=355 Identities=25% Similarity=0.447 Sum_probs=318.6
Q ss_pred ecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccc
Q 009512 126 KGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHS 205 (533)
Q Consensus 126 ~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~ 205 (533)
.++..|.....|+++-|...++..|+.++|..||++|..|||.++++.|+||+|..|+|||++|.+.++..+..
T Consensus 16 s~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~------ 89 (980)
T KOG4284|consen 16 SIDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS------ 89 (980)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc------
Confidence 34556777889999999999999999999999999999999999999999999999999999999888776542
Q ss_pred CCCCCceEEEEcccHHHHHHHHHHHHHHhcC-CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCC
Q 009512 206 QNQKNPLAMVLTPTRELCIQVEEQAKLLGKG-LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDD 284 (533)
Q Consensus 206 ~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~ 284 (533)
+...+.++||+||||+|.|+.+.+.+++.. .++++....||........++.+ ++|+|+|||++..++..+.++..+
T Consensus 90 -~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~ 167 (980)
T KOG4284|consen 90 -RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSH 167 (980)
T ss_pred -ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccc
Confidence 355688999999999999999999999875 46899999999999888877765 899999999999999999999999
Q ss_pred eeEEEEeccchhhh-cchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEec
Q 009512 285 IRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE 362 (533)
Q Consensus 285 i~~vVvDEah~~~~-~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~ 362 (533)
++++|+||||.+.+ ..|..++..|+..+ ..+|++++|||.|..+.+++..++.+|..+.........-.++|++....
T Consensus 168 vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~ 247 (980)
T KOG4284|consen 168 VRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKC 247 (980)
T ss_pred eeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeecc
Confidence 99999999999998 56999999999999 56899999999999999999999999999988887777778888887665
Q ss_pred ch--------hhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCc
Q 009512 363 SN--------KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVP 434 (533)
Q Consensus 363 ~~--------~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~ 434 (533)
.. .|..+|-.++.+.. -...||||+....|+.++.+|. ..|+++.++.|.|+|.+|..+++.+++-.++
T Consensus 248 s~nnsveemrlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~-ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~r 324 (980)
T KOG4284|consen 248 SPNNSVEEMRLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLK-SSGLDVTFISGAMSQKDRLLAVDQLRAFRVR 324 (980)
T ss_pred CCcchHHHHHHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhh-ccCCCeEEeccccchhHHHHHHHHhhhceEE
Confidence 44 24455555554432 2368999999999999999998 8999999999999999999999999999999
Q ss_pred EEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009512 435 VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 435 VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
|||+|+..+||||-+++++|||.|+|.+...|.||||||||.|..|.+++|+.....
T Consensus 325 ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 325 ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 999999999999999999999999999999999999999999999999999976543
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2.7e-49 Score=428.21 Aligned_cols=340 Identities=23% Similarity=0.318 Sum_probs=263.8
Q ss_pred Cccc--CCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCce
Q 009512 136 SFSS--CSLSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 136 ~f~~--~~l~~~l~~~l~~-~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
.|.. ++....+...++. +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-------------~Gi 502 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-------------PGI 502 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-------------CCc
Confidence 3553 5556667776665 49999999999999999999999999999999999999999842 356
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHH------cCCceeecChHHHHH---HHHc-CCC-C
Q 009512 213 AMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ------QGVELIVGTPGRLID---LLMK-HDI-E 281 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------~~~~Iiv~Tp~~l~~---~l~~-~~~-~ 281 (533)
+|||+|+++|+.++...+.. .++....+.++.....+...+. ..++|+++||++|.. ++.. ..+ .
T Consensus 503 TLVISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~ 578 (1195)
T PLN03137 503 TLVISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNS 578 (1195)
T ss_pred EEEEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhh
Confidence 99999999999854444433 3688888999888776654443 358999999999852 2221 111 2
Q ss_pred CCCeeEEEEeccchhhhcc--hHHHHHH---HHHhCCCCcEEEecccCcHHHHHHHHhhc--CCeEEEEeCCCCCCCccc
Q 009512 282 LDDIRMFVLDEVDCMLQRG--FRDQVMQ---IFRAISLPQILMYSATISQEVEKMSSSIS--KDIVVVSVGKPNMPNKAV 354 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~--~~~~i~~---i~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~i 354 (533)
...+.+|||||||++++|| |++.+.. +...++..++++||||++..+...+...+ .++..+.. ... .+++
T Consensus 579 ~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~-Sf~--RpNL 655 (1195)
T PLN03137 579 RGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ-SFN--RPNL 655 (1195)
T ss_pred ccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec-ccC--ccce
Confidence 3458899999999999998 8887765 34556788999999999988776444333 23333221 111 1222
Q ss_pred eEEEEEecchh-hHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q 009512 355 KQLAIWVESNK-KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEV 433 (533)
Q Consensus 355 ~~~~~~~~~~~-k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~ 433 (533)
.. ..+.... ....+..++... ..+.+.||||.++..++.++..|. ..|+.+..|||+|++.+|..+++.|..|++
T Consensus 656 ~y--~Vv~k~kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~-~~Gika~~YHAGLs~eeR~~vqe~F~~Gei 731 (1195)
T PLN03137 656 WY--SVVPKTKKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQ-EFGHKAAFYHGSMDPAQRAFVQKQWSKDEI 731 (1195)
T ss_pred EE--EEeccchhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHH-HCCCCeeeeeCCCCHHHHHHHHHHHhcCCC
Confidence 22 2222222 234455555432 234579999999999999999998 889999999999999999999999999999
Q ss_pred cEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHH
Q 009512 434 PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 434 ~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~ 499 (533)
+|||||+++++|||+|+|++||||++|.|++.|+||+|||||.|..|.|++|++..|...+..++.
T Consensus 732 ~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 732 NIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred cEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999887766666653
No 38
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.1e-48 Score=408.25 Aligned_cols=326 Identities=21% Similarity=0.316 Sum_probs=253.8
Q ss_pred HcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009512 152 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 152 ~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..||..|+|+|.++|+.+++|+|+++++|||||||++|++|++.. ++.+||++|+++|+.|+...++
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-------------~~~~lVi~P~~~L~~dq~~~l~ 72 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-------------DGITLVISPLISLMEDQVLQLK 72 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-------------CCcEEEEecHHHHHHHHHHHHH
Confidence 359999999999999999999999999999999999999998741 3569999999999999887776
Q ss_pred HHhcCCCCeEEEEEcCCchHHHH---HHHH-cCCceeecChHHHHHHH-HcCCC-CCCCeeEEEEeccchhhhcc--hHH
Q 009512 232 LLGKGLPFKTALVVGGDAMARQV---YRIQ-QGVELIVGTPGRLIDLL-MKHDI-ELDDIRMFVLDEVDCMLQRG--FRD 303 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~~Iiv~Tp~~l~~~l-~~~~~-~l~~i~~vVvDEah~~~~~~--~~~ 303 (533)
.+ ++....+.++.....+. ..+. ...+|+++||+++.... ....+ ...++++||+||||+++++| |++
T Consensus 73 ~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~ 148 (470)
T TIGR00614 73 AS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRP 148 (470)
T ss_pred Hc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHH
Confidence 54 56667776665544322 2222 34899999999975322 11111 46789999999999999887 666
Q ss_pred HHHH---HHHhCCCCcEEEecccCcHHHHHHHHhhc--CCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhcc
Q 009512 304 QVMQ---IFRAISLPQILMYSATISQEVEKMSSSIS--KDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQ 378 (533)
Q Consensus 304 ~i~~---i~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~ 378 (533)
.+.. +...++..+++++|||+++.+.......+ .++..+... ... +++...+. .........+..++...
T Consensus 149 ~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s-~~r--~nl~~~v~-~~~~~~~~~l~~~l~~~- 223 (470)
T TIGR00614 149 DYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS-FDR--PNLYYEVR-RKTPKILEDLLRFIRKE- 223 (470)
T ss_pred HHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC-CCC--CCcEEEEE-eCCccHHHHHHHHHHHh-
Confidence 6654 45566889999999999987765444332 234333221 111 22221111 11113444566666432
Q ss_pred CCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcC
Q 009512 379 HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD 458 (533)
Q Consensus 379 ~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~ 458 (533)
..+.++||||++++.++.++..|. ..++.+..+||+|++++|..+++.|++|+++|||||+++++|||+|++++||+|+
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~-~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~ 302 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQ-NLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYS 302 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHH-hcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeC
Confidence 234567999999999999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHH
Q 009512 459 MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDI 500 (533)
Q Consensus 459 ~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~ 500 (533)
+|.|++.|+||+||+||.|..|.|++|+++.|...++.++..
T Consensus 303 ~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~ 344 (470)
T TIGR00614 303 LPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLME 344 (470)
T ss_pred CCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHhc
Confidence 999999999999999999999999999999888777776543
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1e-47 Score=423.34 Aligned_cols=335 Identities=23% Similarity=0.283 Sum_probs=260.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEE
Q 009512 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
.|++++||+.+.+.+.+.||.+|+|+|.++++. +.+|+|++++||||||||++|++|++.++.. ++++|
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~----------~~kal 71 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR----------GGKAL 71 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc----------CCcEE
Confidence 578899999999999999999999999999998 6799999999999999999999999988742 56799
Q ss_pred EEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccc
Q 009512 215 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 294 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah 294 (533)
|++|+++|+.|+++.++++.. .++++..+.|+..... ......+|+|+||+++..++++....++++++||+||+|
T Consensus 72 ~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~---~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H 147 (737)
T PRK02362 72 YIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRD---EWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVH 147 (737)
T ss_pred EEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCccc---cccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcc
Confidence 999999999999999988754 4788888888765433 123458999999999999988766668899999999999
Q ss_pred hhhhcchHHHHHHHHHhC----CCCcEEEecccCcHHHHHHHHhhcCCeE-------EEEeC--C-CCCCCccceEEEEE
Q 009512 295 CMLQRGFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKDIV-------VVSVG--K-PNMPNKAVKQLAIW 360 (533)
Q Consensus 295 ~~~~~~~~~~i~~i~~~~----~~~q~i~~SAT~~~~~~~~~~~~~~~~~-------~i~~~--~-~~~~~~~i~~~~~~ 360 (533)
.+.+.+++..++.++.++ +..|+|++|||+++ ...++.++....+ .+..+ . ....... .+. .
T Consensus 148 ~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~--~ 223 (737)
T PRK02362 148 LIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQR--E 223 (737)
T ss_pred ccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccc--c
Confidence 999888888888887766 57899999999975 2333333322211 10000 0 0000000 000 0
Q ss_pred ecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhc-----------------------------------
Q 009512 361 VESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT----------------------------------- 405 (533)
Q Consensus 361 ~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~----------------------------------- 405 (533)
.....+ ...+..+......++++||||+++..|+.++..|....
T Consensus 224 ~~~~~~-~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l 302 (737)
T PRK02362 224 VEVPSK-DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCV 302 (737)
T ss_pred CCCccc-hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHH
Confidence 110111 12222232222346789999999999999988875321
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEE----cC-----CCCCHhHHHHhhcccCCC
Q 009512 406 GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD-----MPNSIKEYVHQIGRASQM 476 (533)
Q Consensus 406 ~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~~-----~p~s~~~y~qriGR~gR~ 476 (533)
...+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.+..+|+||+|||||.
T Consensus 303 ~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 303 AKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred HhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 135789999999999999999999999999999999999999999999997 66 688999999999999999
Q ss_pred CCc--cEEEEEecCc
Q 009512 477 GDE--GTAIVFVNEE 489 (533)
Q Consensus 477 g~~--g~~~~l~~~~ 489 (533)
|.. |.+++++...
T Consensus 383 g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 383 GLDPYGEAVLLAKSY 397 (737)
T ss_pred CCCCCceEEEEecCc
Confidence 875 9999999765
No 40
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.1e-46 Score=405.26 Aligned_cols=333 Identities=21% Similarity=0.321 Sum_probs=258.7
Q ss_pred CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEccc
Q 009512 141 SLSQKLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 141 ~l~~~l~~~l~~-~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
+++....+.|++ .||..|+|+|.++++.++.|+|+++.+|||+|||++|++|++.. .+.+||++|+
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-------------~g~tlVisPl 74 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-------------DGLTLVVSPL 74 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-------------CCCEEEEecH
Confidence 334444455555 59999999999999999999999999999999999999999742 3469999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHH---HHHc-CCceeecChHHHHHHHHcCCCCCCCeeEEEEeccch
Q 009512 220 RELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY---RIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 295 (533)
Q Consensus 220 r~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~ 295 (533)
++|+.|+...++.+ ++....+.++........ .+.. ..+++++||+++........+...++++|||||||+
T Consensus 75 ~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~ 150 (607)
T PRK11057 75 ISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHC 150 (607)
T ss_pred HHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccc
Confidence 99999988877765 566666666665544322 2233 378999999998642222233345789999999999
Q ss_pred hhhcc--hHHHHH---HHHHhCCCCcEEEecccCcHHHHHHH-Hhh-cCCeEEEEeCCCCCCCccceEEEEEecchhhHH
Q 009512 296 MLQRG--FRDQVM---QIFRAISLPQILMYSATISQEVEKMS-SSI-SKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQ 368 (533)
Q Consensus 296 ~~~~~--~~~~i~---~i~~~~~~~q~i~~SAT~~~~~~~~~-~~~-~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 368 (533)
+.++| |++.+. .+...++..+++++|||++....... ..+ +.++..... .... +++. +.......+..
T Consensus 151 i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~-~~~r--~nl~--~~v~~~~~~~~ 225 (607)
T PRK11057 151 ISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS-SFDR--PNIR--YTLVEKFKPLD 225 (607)
T ss_pred cccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC-CCCC--Ccce--eeeeeccchHH
Confidence 99877 666554 34556688899999999998765433 332 234433321 1111 2221 22233334445
Q ss_pred HHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC
Q 009512 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL 448 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi 448 (533)
.+..++.. ..+.++||||+++.+|+.++..|. ..++.+..+||+|++.+|..+++.|+.|+++|||||+++++|||+
T Consensus 226 ~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~-~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDi 302 (607)
T PRK11057 226 QLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQ-SRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINK 302 (607)
T ss_pred HHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHH-hCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCC
Confidence 56666644 345689999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHH
Q 009512 449 LGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELV 498 (533)
Q Consensus 449 ~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~ 498 (533)
|++++||+||+|.|.+.|+||+|||||.|.+|.|++|+++.|...++.++
T Consensus 303 p~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877666554
No 41
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-46 Score=412.61 Aligned_cols=339 Identities=21% Similarity=0.262 Sum_probs=262.4
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEE
Q 009512 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPS-ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
.|+++++++.+.+.+++.||..|+|+|.++++. +++|+|++++||||||||++|.+|++.++.. .+.++|
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~---------~~~~~l 72 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR---------EGGKAV 72 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh---------cCCeEE
Confidence 577889999999999999999999999999986 7899999999999999999999999988763 356899
Q ss_pred EEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccc
Q 009512 215 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD 294 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah 294 (533)
|++|+++|+.|+++.++.+. ..+.++..+.|+...... ....++|+|+||+++..++.+....++++++||+||+|
T Consensus 73 ~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H 148 (720)
T PRK00254 73 YLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIH 148 (720)
T ss_pred EEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcC
Confidence 99999999999999888764 457888888887654332 23568999999999999988766678999999999999
Q ss_pred hhhhcchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCc--cceEEEEEecchh--h-HH
Q 009512 295 CMLQRGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNK--AVKQLAIWVESNK--K-KQ 368 (533)
Q Consensus 295 ~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~i~~~~~~~~~~~--k-~~ 368 (533)
.+.+.+++..+..++.++ ...|+|++|||+++ ...++.++....+. ......+.. ...+......... + ..
T Consensus 149 ~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n-~~~la~wl~~~~~~--~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~ 225 (720)
T PRK00254 149 LIGSYDRGATLEMILTHMLGRAQILGLSATVGN-AEELAEWLNAELVV--SDWRPVKLRKGVFYQGFLFWEDGKIERFPN 225 (720)
T ss_pred ccCCccchHHHHHHHHhcCcCCcEEEEEccCCC-HHHHHHHhCCcccc--CCCCCCcceeeEecCCeeeccCcchhcchH
Confidence 999888999999999887 56899999999975 34555544332211 111111110 0111111111111 0 11
Q ss_pred HHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhh--------------------------------cCCeEEEEcCCC
Q 009512 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT--------------------------------TGMKALSIHGEK 416 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~--------------------------------~~~~~~~ih~~~ 416 (533)
.+...+.+....+.++||||+++..|+.++..|... ....+..+||+|
T Consensus 226 ~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl 305 (720)
T PRK00254 226 SWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGL 305 (720)
T ss_pred HHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCC
Confidence 222223232234678999999999998887666311 123588999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEE-------cCCC-CCHhHHHHhhcccCCCC--CccEEEEEe
Q 009512 417 PMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII-------FDMP-NSIKEYVHQIGRASQMG--DEGTAIVFV 486 (533)
Q Consensus 417 ~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~-------~~~p-~s~~~y~qriGR~gR~g--~~g~~~~l~ 486 (533)
++++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.| .+..+|.||+|||||.| ..|.+++++
T Consensus 306 ~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 306 GRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVA 385 (720)
T ss_pred CHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEe
Confidence 9999999999999999999999999999999999999984 4443 36789999999999975 569999999
Q ss_pred cCcC
Q 009512 487 NEEN 490 (533)
Q Consensus 487 ~~~~ 490 (533)
...+
T Consensus 386 ~~~~ 389 (720)
T PRK00254 386 TTEE 389 (720)
T ss_pred cCcc
Confidence 8755
No 42
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=4.4e-46 Score=401.83 Aligned_cols=326 Identities=25% Similarity=0.359 Sum_probs=259.0
Q ss_pred HHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHH
Q 009512 149 NIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE 227 (533)
Q Consensus 149 ~l~~-~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~ 227 (533)
.|++ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..++|++|+++|+.|+.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-------------~g~~lVisPl~sL~~dq~ 70 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-------------KGLTVVISPLISLMKDQV 70 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-------------CCcEEEEcCCHHHHHHHH
Confidence 3444 59999999999999999999999999999999999999998742 345899999999999988
Q ss_pred HHHHHHhcCCCCeEEEEEcCCchHHHHH---HHH-cCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcc--h
Q 009512 228 EQAKLLGKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG--F 301 (533)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~--~ 301 (533)
..++.+ ++.+..+.++........ .+. ...+|+++||++|........+...++++||+||||++.++| |
T Consensus 71 ~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~f 146 (591)
T TIGR01389 71 DQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDF 146 (591)
T ss_pred HHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCcc
Confidence 877765 567777777766554322 222 458999999999965443334456789999999999999876 7
Q ss_pred HHHHHHH---HHhCCCCcEEEecccCcHHHHHHHHhhcC--CeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHh
Q 009512 302 RDQVMQI---FRAISLPQILMYSATISQEVEKMSSSISK--DIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMS 376 (533)
Q Consensus 302 ~~~i~~i---~~~~~~~q~i~~SAT~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~ 376 (533)
++.+..+ ...++..+++++|||.+..+.......+. ++..+. .... .+++ .+.......+...+.+++..
T Consensus 147 rp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~--r~nl--~~~v~~~~~~~~~l~~~l~~ 221 (591)
T TIGR01389 147 RPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFI-TSFD--RPNL--RFSVVKKNNKQKFLLDYLKK 221 (591)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCC--CCCc--EEEEEeCCCHHHHHHHHHHh
Confidence 7766555 44556777999999999877654444332 332222 1111 1222 22223344556677777765
Q ss_pred ccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEE
Q 009512 377 KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII 456 (533)
Q Consensus 377 ~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~ 456 (533)
.. +.++||||+++..++.++..|. ..++.+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|++++||+
T Consensus 222 ~~--~~~~IIf~~sr~~~e~la~~L~-~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~ 298 (591)
T TIGR01389 222 HR--GQSGIIYASSRKKVEELAERLE-SQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH 298 (591)
T ss_pred cC--CCCEEEEECcHHHHHHHHHHHH-hCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE
Confidence 43 5689999999999999999998 78999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHH
Q 009512 457 FDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 457 ~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~ 499 (533)
|++|.|.+.|+||+|||||.|..|.|++|++..|...++.+++
T Consensus 299 ~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 299 YDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred cCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888766665553
No 43
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.1e-45 Score=406.22 Aligned_cols=342 Identities=18% Similarity=0.261 Sum_probs=250.3
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHH
Q 009512 142 LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
+++.+.+.++. +|..|||+|.++|+.+++|+|++++||||||||++|++|++.++...... .....+.++||++|+++
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~-~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE-GELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc-cCCCCCeEEEEEcCHHH
Confidence 56666666655 79999999999999999999999999999999999999999988753211 01134678999999999
Q ss_pred HHHHHHHHHHH-------Hh----cCC-CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCC--CCCCeeE
Q 009512 222 LCIQVEEQAKL-------LG----KGL-PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI--ELDDIRM 287 (533)
Q Consensus 222 L~~Q~~~~~~~-------~~----~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~--~l~~i~~ 287 (533)
|+.|+++.+.. +. ... ++++....|+.+...+...+.+.++|+|+||++|..++..... .+.++++
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~ 175 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCE
Confidence 99998775442 22 233 5677888888877776666677899999999999887765432 4789999
Q ss_pred EEEeccchhhhcchHHHHHHHHHhC-----CCCcEEEecccCcHHHHHHHHhhcC-------CeEEEEeCCCCCCCccce
Q 009512 288 FVLDEVDCMLQRGFRDQVMQIFRAI-----SLPQILMYSATISQEVEKMSSSISK-------DIVVVSVGKPNMPNKAVK 355 (533)
Q Consensus 288 vVvDEah~~~~~~~~~~i~~i~~~~-----~~~q~i~~SAT~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~i~ 355 (533)
||+||+|.+.+..++..+...+.++ +..|++++|||+++ ...++..+.. .+..+.... ......+.
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~-~~k~~~i~ 253 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDAR-FVKPFDIK 253 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccC-CCccceEE
Confidence 9999999999776665555544443 46799999999975 2233332221 112221111 00000000
Q ss_pred EE-----EEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhc-----CCeEEEEcCCCCHHHHHHHH
Q 009512 356 QL-----AIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT-----GMKALSIHGEKPMKERREIM 425 (533)
Q Consensus 356 ~~-----~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~-----~~~~~~ih~~~~~~~r~~~~ 425 (533)
.. ............+...+......+.++||||+++..|+.++..|.... +..+..+||++++++|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 00 000111122233444444433345689999999999999999997432 46789999999999999999
Q ss_pred HHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCC-CccEEEEEec
Q 009512 426 RSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMG-DEGTAIVFVN 487 (533)
Q Consensus 426 ~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g-~~g~~~~l~~ 487 (533)
+.|++|.++|||||+++++|||+|++++||+++.|.+...|+||+||+||.+ ..+.++++..
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999999999999999999999999874 3344444443
No 44
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.7e-44 Score=395.24 Aligned_cols=344 Identities=18% Similarity=0.231 Sum_probs=259.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEE
Q 009512 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMV 215 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Li 215 (533)
.|+++++++.+.+.+...+|. ++|+|.++++.+.++++++++||||||||++++++++..+.. +.++||
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~----------~~k~v~ 70 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA----------GLKSIY 70 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh----------CCcEEE
Confidence 567889999999999999997 999999999999999999999999999999999999887653 467999
Q ss_pred EcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccch
Q 009512 216 LTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 295 (533)
Q Consensus 216 l~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~ 295 (533)
++|+++||.|+++.++++. ..+.++....|+...... ....++|+|+||+++..++.+....+.++++||+||+|+
T Consensus 71 i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~ 146 (674)
T PRK01172 71 IVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHI 146 (674)
T ss_pred EechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchh
Confidence 9999999999999988864 457788788777554332 234689999999999999887766689999999999999
Q ss_pred hhhcchHHHHHHHHHhC----CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCcc-ce-EEEEEecchh-hHH
Q 009512 296 MLQRGFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKA-VK-QLAIWVESNK-KKQ 368 (533)
Q Consensus 296 ~~~~~~~~~i~~i~~~~----~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-i~-~~~~~~~~~~-k~~ 368 (533)
+.+.+++..++.++.++ +..|+|++|||+++ ..+++.++....+. ......+... +. ......+... ...
T Consensus 147 l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n-~~~la~wl~~~~~~--~~~r~vpl~~~i~~~~~~~~~~~~~~~~ 223 (674)
T PRK01172 147 IGDEDRGPTLETVLSSARYVNPDARILALSATVSN-ANELAQWLNASLIK--SNFRPVPLKLGILYRKRLILDGYERSQV 223 (674)
T ss_pred ccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCC-HHHHHHHhCCCccC--CCCCCCCeEEEEEecCeeeecccccccc
Confidence 99888888887776654 56899999999976 34555544332211 1111111100 00 0000111111 111
Q ss_pred HHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhc------------------------CCeEEEEcCCCCHHHHHHH
Q 009512 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT------------------------GMKALSIHGEKPMKERREI 424 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~------------------------~~~~~~ih~~~~~~~r~~~ 424 (533)
.+..++......++++||||+++..++.++..|.... ...+..+||++++++|..+
T Consensus 224 ~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~v 303 (674)
T PRK01172 224 DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFI 303 (674)
T ss_pred cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHH
Confidence 2333444333456789999999999999998886321 1246789999999999999
Q ss_pred HHHHhcCCCcEEEEeccccccCCCCCccEEEEcCC---------CCCHhHHHHhhcccCCCCC--ccEEEEEecCcC-HH
Q 009512 425 MRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM---------PNSIKEYVHQIGRASQMGD--EGTAIVFVNEEN-KN 492 (533)
Q Consensus 425 ~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~---------p~s~~~y~qriGR~gR~g~--~g~~~~l~~~~~-~~ 492 (533)
++.|++|.++|||||+++++|+|+|+. .||+++. |.+..+|.||+|||||.|. .|.+++++...+ .+
T Consensus 304 e~~f~~g~i~VLvaT~~la~Gvnipa~-~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~ 382 (674)
T PRK01172 304 EEMFRNRYIKVIVATPTLAAGVNLPAR-LVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYD 382 (674)
T ss_pred HHHHHcCCCeEEEecchhhccCCCcce-EEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHH
Confidence 999999999999999999999999986 5555442 5688999999999999985 577888876543 44
Q ss_pred HHHHHH
Q 009512 493 LFQELV 498 (533)
Q Consensus 493 ~~~~l~ 498 (533)
.+++++
T Consensus 383 ~~~~~l 388 (674)
T PRK01172 383 AAKKYL 388 (674)
T ss_pred HHHHHH
Confidence 444443
No 45
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.2e-44 Score=383.97 Aligned_cols=318 Identities=20% Similarity=0.235 Sum_probs=246.5
Q ss_pred HHHHH-cCCCCCCHHHHHHHHHHhCCC-cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEE-EEcccHHHHH
Q 009512 148 QNIEA-AGYDMPTPVQMQAIPSALSGK-SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM-VLTPTRELCI 224 (533)
Q Consensus 148 ~~l~~-~g~~~p~~~Q~~~i~~i~~g~-~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L-il~Ptr~L~~ 224 (533)
+.+.. .||. |||||.++++.++.|+ ++++.+|||||||.++.++++... .....++.| +++|||+|+.
T Consensus 6 ~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~--------~~~~~~~rLv~~vPtReLa~ 76 (844)
T TIGR02621 6 EWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE--------IGAKVPRRLVYVVNRRTVVD 76 (844)
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc--------ccccccceEEEeCchHHHHH
Confidence 34444 4898 9999999999999998 577789999999997765555321 112334455 5779999999
Q ss_pred HHHHHHHHHhcCC-----------------------CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCC-
Q 009512 225 QVEEQAKLLGKGL-----------------------PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI- 280 (533)
Q Consensus 225 Q~~~~~~~~~~~~-----------------------~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~- 280 (533)
|+++.++++++.+ ++++..++||.+...++..+..+++|||+|++ ++.+..+
T Consensus 77 Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D----~i~sr~L~ 152 (844)
T TIGR02621 77 QVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD----MIGSRLLF 152 (844)
T ss_pred HHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH----HHcCCccc
Confidence 9999999988754 47889999999999999999999999999964 4444333
Q ss_pred ---------------CCCCeeEEEEeccchhhhcchHHHHHHHHHhC--CC----CcEEEecccCcHHHHHHHHhhcCCe
Q 009512 281 ---------------ELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SL----PQILMYSATISQEVEKMSSSISKDI 339 (533)
Q Consensus 281 ---------------~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~--~~----~q~i~~SAT~~~~~~~~~~~~~~~~ 339 (533)
.+.+++++|+|||| ++++|...+..|++.+ +. .|+++||||++.++..+...++.++
T Consensus 153 ~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p 230 (844)
T TIGR02621 153 SGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAED 230 (844)
T ss_pred cccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCC
Confidence 26889999999999 6789999999999964 22 5999999999998888887777777
Q ss_pred EEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHh-ccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCH
Q 009512 340 VVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMS-KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPM 418 (533)
Q Consensus 340 ~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~ 418 (533)
..+.+.........+.+.+ ......+...++..+.. ....++++||||+++..|+.+++.|+ ..++ ..+||+|++
T Consensus 231 ~~i~V~~~~l~a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~-~~g~--~lLHG~m~q 306 (844)
T TIGR02621 231 YKHPVLKKRLAAKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLP-KEKF--ELLTGTLRG 306 (844)
T ss_pred ceeecccccccccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHH-hcCC--eEeeCCCCH
Confidence 6666554444444555532 23333343333333222 22345689999999999999999998 5555 899999999
Q ss_pred HHHH-----HHHHHHhc----CC-------CcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCc-cE
Q 009512 419 KERR-----EIMRSFLV----GE-------VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDE-GT 481 (533)
Q Consensus 419 ~~r~-----~~~~~f~~----g~-------~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~-g~ 481 (533)
.+|. .+++.|+. |. ..|||||+++++||||+. ++||++..| .+.|+||+||+||.|+. +.
T Consensus 307 ~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 307 AERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred HHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCc
Confidence 9999 88999987 44 689999999999999986 899998777 69999999999999985 44
Q ss_pred EEEEec
Q 009512 482 AIVFVN 487 (533)
Q Consensus 482 ~~~l~~ 487 (533)
++++++
T Consensus 384 ~i~vv~ 389 (844)
T TIGR02621 384 QIAVVH 389 (844)
T ss_pred eEEEEe
Confidence 455553
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.8e-43 Score=386.39 Aligned_cols=366 Identities=18% Similarity=0.232 Sum_probs=272.3
Q ss_pred ccccCCcCccCcCCCHHHHHHHHhhcCceEecC--C-----CCCc-ccCcccCCCCHHHHHHHHH-cCCCCCCHHHHHHH
Q 009512 96 YVRESDENSGFQSLTIGQTDSLRKRLEINVKGD--A-----VPAP-ILSFSSCSLSQKLLQNIEA-AGYDMPTPVQMQAI 166 (533)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~-----~p~~-~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~~i 166 (533)
|...+.+.+.+..+....|.+.+++..-.+..- . .-+. ...+ .+..+..+...+.. .+| +|||.|.++|
T Consensus 383 y~~~~~~~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~~-~~~~~~~~~~~~~~~~~f-~~T~~Q~~aI 460 (926)
T TIGR00580 383 YVGGSGKNPALDKLGGKSWEKTKAKVKKSVREIAAKLIELYAKRKAIKGH-AFPPDLEWQQEFEDSFPF-EETPDQLKAI 460 (926)
T ss_pred ecCCCCCCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCHHHHHHHHHhCCC-CCCHHHHHHH
Confidence 544455567899999999999877653222110 0 0000 0011 13345566666655 588 5999999999
Q ss_pred HHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCe
Q 009512 167 PSALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFK 240 (533)
Q Consensus 167 ~~i~~g------~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~ 240 (533)
+.++.+ +|.+++|+||||||.+|++|++..+.. +++++|++||++||.|+++.++++...++++
T Consensus 461 ~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~----------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~ 530 (926)
T TIGR00580 461 EEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD----------GKQVAVLVPTTLLAQQHFETFKERFANFPVT 530 (926)
T ss_pred HHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh----------CCeEEEEeCcHHHHHHHHHHHHHHhccCCcE
Confidence 999864 789999999999999999999887643 4789999999999999999999988888888
Q ss_pred EEEEEcCCchHHH---HHHHHc-CCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-CCC
Q 009512 241 TALVVGGDAMARQ---VYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLP 315 (533)
Q Consensus 241 ~~~~~gg~~~~~~---~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~~~ 315 (533)
+..+.|+.+...+ ...+.. .++|||+||.. + ...+.++++++||+||+|++.. .....+..+ +..
T Consensus 531 v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVIDEahrfgv-----~~~~~L~~~~~~~ 600 (926)
T TIGR00580 531 IELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLIIDEEQRFGV-----KQKEKLKELRTSV 600 (926)
T ss_pred EEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEeecccccch-----hHHHHHHhcCCCC
Confidence 8888887664432 334444 48999999942 2 3456789999999999998532 223344444 578
Q ss_pred cEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHH
Q 009512 316 QILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGAD 395 (533)
Q Consensus 316 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~ 395 (533)
++++||||+.+....+......++..+....... ..+...+..... ..+...+......+++++|||+++.+++
T Consensus 601 ~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R--~~V~t~v~~~~~----~~i~~~i~~el~~g~qv~if~n~i~~~e 674 (926)
T TIGR00580 601 DVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDR--LPVRTFVMEYDP----ELVREAIRRELLRGGQVFYVHNRIESIE 674 (926)
T ss_pred CEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCc--cceEEEEEecCH----HHHHHHHHHHHHcCCeEEEEECCcHHHH
Confidence 9999999987666555555555665555433221 123333322221 1222222222234578999999999999
Q ss_pred HHHHHHHhh-cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCC-CHhHHHHhhccc
Q 009512 396 LLSNAISVT-TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN-SIKEYVHQIGRA 473 (533)
Q Consensus 396 ~l~~~l~~~-~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~-s~~~y~qriGR~ 473 (533)
.+++.|++. .+.++..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+++.|. +..+|.||+||+
T Consensus 675 ~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRv 754 (926)
T TIGR00580 675 KLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRV 754 (926)
T ss_pred HHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCC
Confidence 999999843 378899999999999999999999999999999999999999999999999999875 678999999999
Q ss_pred CCCCCccEEEEEecCc
Q 009512 474 SQMGDEGTAIVFVNEE 489 (533)
Q Consensus 474 gR~g~~g~~~~l~~~~ 489 (533)
||.|+.|.|++++.+.
T Consensus 755 GR~g~~g~aill~~~~ 770 (926)
T TIGR00580 755 GRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCCCCCeEEEEEECCc
Confidence 9999999999999754
No 47
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-46 Score=332.96 Aligned_cols=335 Identities=30% Similarity=0.527 Sum_probs=293.2
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCce
Q 009512 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
....|.++-|.+++++++-..||.+|+.+|.++||...-|.|++++|..|.|||.+|.+.-+.++.- ....-.
T Consensus 40 hssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep-------v~g~vs 112 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP-------VDGQVS 112 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC-------CCCeEE
Confidence 4456888889999999999999999999999999999999999999999999999999988877642 123456
Q ss_pred EEEEcccHHHHHHHHHHHHHHhcCCC-CeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEe
Q 009512 213 AMVLTPTRELCIQVEEQAKLLGKGLP-FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLD 291 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvD 291 (533)
+|++|.||+||-|+..+..+|++.++ .++...+||.+.......+++-++|+|+|||+++.+.+...+++++++.+|+|
T Consensus 113 vlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 113 VLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLD 192 (387)
T ss_pred EEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehh
Confidence 99999999999999999999999876 88999999999988888888889999999999999999999999999999999
Q ss_pred ccchhhhc-chHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCC-CCCCccceEEEEEecchhhHH
Q 009512 292 EVDCMLQR-GFRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKP-NMPNKAVKQLAIWVESNKKKQ 368 (533)
Q Consensus 292 Eah~~~~~-~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~k~~ 368 (533)
|||.|++. ..+..+..|++.. ...|+.+||||++++++...+.++.+|..+.+... ........|++....+.+|..
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNr 272 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNR 272 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhh
Confidence 99998763 4677888888777 56789999999999999999999999998887664 456677888888888899999
Q ss_pred HHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC
Q 009512 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL 448 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi 448 (533)
++.++|.... -..++||+.|... |. | ..+ +|||++++||+||
T Consensus 273 kl~dLLd~Le--FNQVvIFvKsv~R-------l~-------------------------f---~kr-~vat~lfgrgmdi 314 (387)
T KOG0329|consen 273 KLNDLLDVLE--FNQVVIFVKSVQR-------LS-------------------------F---QKR-LVATDLFGRGMDI 314 (387)
T ss_pred hhhhhhhhhh--hcceeEeeehhhh-------hh-------------------------h---hhh-hHHhhhhccccCc
Confidence 9998886543 2479999988654 10 2 123 8999999999999
Q ss_pred CCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecC-cCHHHHHHHHHHHHhcCCCCCHHH
Q 009512 449 LGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNE-ENKNLFQELVDILKSSGAGIPREL 512 (533)
Q Consensus 449 ~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~-~~~~~~~~l~~~l~~~~~~~p~~l 512 (533)
..++.|+|||+|.+.+.|+||+|||||.|..|.+++|++. ++...+..+.+..+-...++|++.
T Consensus 315 ervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpdei 379 (387)
T KOG0329|consen 315 ERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDEI 379 (387)
T ss_pred ccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCccc
Confidence 9999999999999999999999999999999999999975 577788888888888889999873
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.1e-42 Score=372.97 Aligned_cols=340 Identities=19% Similarity=0.275 Sum_probs=253.9
Q ss_pred HHHHHHH-HHcCCCCCCHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEE
Q 009512 144 QKLLQNI-EAAGYDMPTPVQMQAIPSALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVL 216 (533)
Q Consensus 144 ~~l~~~l-~~~g~~~p~~~Q~~~i~~i~~g------~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil 216 (533)
..+.+.+ ...+| +||++|.++++.+..+ .+.|++|+||||||++|++|++..+. .+.+++|+
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~----------~g~q~lil 316 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE----------AGYQAALM 316 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH----------cCCeEEEE
Confidence 4444554 44577 6999999999999866 47999999999999999999987764 36789999
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHH---HHHHHHcC-CceeecChHHHHHHHHcCCCCCCCeeEEEEec
Q 009512 217 TPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR---QVYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDE 292 (533)
Q Consensus 217 ~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDE 292 (533)
+||++||.|+++.++++...+++++..+.|+..... +...+..+ ++|+|+||+.+.+ .+.+.++++||+||
T Consensus 317 aPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE 391 (681)
T PRK10917 317 APTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDE 391 (681)
T ss_pred eccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEec
Confidence 999999999999999999888899999999987543 33445554 9999999987733 34578999999999
Q ss_pred cchhhhcchHHHHHHHHHhCCCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHH
Q 009512 293 VDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFD 372 (533)
Q Consensus 293 ah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 372 (533)
+|++... +...+......+++++||||+.+....+......+...+.... .....+...+. . ..+...+++
T Consensus 392 ~Hrfg~~----qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p--~~r~~i~~~~~--~-~~~~~~~~~ 462 (681)
T PRK10917 392 QHRFGVE----QRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELP--PGRKPITTVVI--P-DSRRDEVYE 462 (681)
T ss_pred hhhhhHH----HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCC--CCCCCcEEEEe--C-cccHHHHHH
Confidence 9997432 2222333334689999999986655444433223333332211 11222333322 2 223344555
Q ss_pred HHHhccCCCCCEEEEEcCcc--------cHHHHHHHHHhhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 009512 373 ILMSKQHFTPPAVVYVGSRL--------GADLLSNAISVTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILG 443 (533)
Q Consensus 373 ~l~~~~~~~~~~lIF~~s~~--------~~~~l~~~l~~~~-~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~ 443 (533)
.+......+.+++|||+..+ .++.+++.|.... ++++..+||+|++.+|..+++.|++|+++|||||++++
T Consensus 463 ~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie 542 (681)
T PRK10917 463 RIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIE 542 (681)
T ss_pred HHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECccee
Confidence 55554455679999999654 4556677776433 47899999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEcCCCC-CHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCCC
Q 009512 444 RGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGI 508 (533)
Q Consensus 444 ~Gldi~~v~~VI~~~~p~-s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~ 508 (533)
+|+|+|++++||+++.|. ....|.||+||+||.|..|.|+++++....+...+-++.++++...+
T Consensus 543 ~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~~~~dgf 608 (681)
T PRK10917 543 VGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMRETNDGF 608 (681)
T ss_pred eCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHHHhcchH
Confidence 999999999999999987 57889999999999999999999996443334445566666654444
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=4e-42 Score=386.02 Aligned_cols=395 Identities=18% Similarity=0.201 Sum_probs=282.7
Q ss_pred ccccCCcCccCcCCCHHHHHHHHhhcCceEecC--C-----CCCcccCcccCCCCHHHHHH-HHHcCCCCCCHHHHHHHH
Q 009512 96 YVRESDENSGFQSLTIGQTDSLRKRLEINVKGD--A-----VPAPILSFSSCSLSQKLLQN-IEAAGYDMPTPVQMQAIP 167 (533)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~-----~p~~~~~f~~~~l~~~l~~~-l~~~g~~~p~~~Q~~~i~ 167 (533)
|...+...+.+..+....|.+.+++..-.+... . .-+....=..+..+..+... ....+| .||+.|.++|+
T Consensus 532 y~~~~~~~~~l~~lg~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~ 610 (1147)
T PRK10689 532 YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF-ETTPDQAQAIN 610 (1147)
T ss_pred ecCCCCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCC-CCCHHHHHHHH
Confidence 554455567799999999999877654222110 0 00000000112233344444 456688 79999999999
Q ss_pred HHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeE
Q 009512 168 SALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKT 241 (533)
Q Consensus 168 ~i~~g------~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~ 241 (533)
.++.+ +|+|++|+||+|||.+|+.+++..+. .+++++||+||++||.|+++.++++....++++
T Consensus 611 ~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~----------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i 680 (1147)
T PRK10689 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE----------NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRI 680 (1147)
T ss_pred HHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH----------cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceE
Confidence 99976 89999999999999999888776542 367899999999999999999998777778888
Q ss_pred EEEEcCCchHHHHHHH---H-cCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-CCCc
Q 009512 242 ALVVGGDAMARQVYRI---Q-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQ 316 (533)
Q Consensus 242 ~~~~gg~~~~~~~~~l---~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~~~q 316 (533)
..+.|+.+...+...+ . ..++|+|+||+.+ +..+.++++++||+||+|++ ++. + ...+..+ ...+
T Consensus 681 ~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrf---G~~-~-~e~lk~l~~~~q 750 (1147)
T PRK10689 681 EMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRF---GVR-H-KERIKAMRADVD 750 (1147)
T ss_pred EEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhc---chh-H-HHHHHhcCCCCc
Confidence 8888887776665443 2 3589999999643 23456789999999999997 322 2 2334444 6789
Q ss_pred EEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHH
Q 009512 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADL 396 (533)
Q Consensus 317 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~ 396 (533)
+++||||+.+....++...+.++..+...... ...+.+.............++..+ ..+++++|||++++.++.
T Consensus 751 vLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el----~r~gqv~vf~n~i~~ie~ 824 (1147)
T PRK10689 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREI----LRGGQVYYLYNDVENIQK 824 (1147)
T ss_pred EEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHH----hcCCeEEEEECCHHHHHH
Confidence 99999998877777777777777776543322 123444433332222222222222 235689999999999999
Q ss_pred HHHHHHhh-cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCC-CCHhHHHHhhcccC
Q 009512 397 LSNAISVT-TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP-NSIKEYVHQIGRAS 474 (533)
Q Consensus 397 l~~~l~~~-~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p-~s~~~y~qriGR~g 474 (533)
+++.|.+. .+..+..+||+|++.+|..++..|++|+++|||||+++++|||+|++++||+.+.+ .+..+|+||+||+|
T Consensus 825 la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvG 904 (1147)
T PRK10689 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 (1147)
T ss_pred HHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccC
Confidence 99999843 26789999999999999999999999999999999999999999999999966543 46678999999999
Q ss_pred CCCCccEEEEEecCcC--HHHHHHHHHHHHhc---CCCCCHHHHhchh
Q 009512 475 QMGDEGTAIVFVNEEN--KNLFQELVDILKSS---GAGIPRELINSRY 517 (533)
Q Consensus 475 R~g~~g~~~~l~~~~~--~~~~~~l~~~l~~~---~~~~p~~l~~~~~ 517 (533)
|.|+.|.|++++.+.. .+...+=++.++.. |..+--...++..
T Consensus 905 R~g~~g~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~ 952 (1147)
T PRK10689 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 (1147)
T ss_pred CCCCceEEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHh
Confidence 9999999999886532 12233333333332 3355445555543
No 50
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=7.5e-42 Score=369.36 Aligned_cols=349 Identities=17% Similarity=0.220 Sum_probs=255.9
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEc
Q 009512 144 QKLLQNIEAAGYDMPTPVQMQAIPSALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 217 (533)
Q Consensus 144 ~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g------~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~ 217 (533)
..+.+.+...+| +||+.|.++++.++.+ .+.+++|+||||||++|++|++..+. .+.+++|++
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~----------~g~qvlila 291 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE----------AGYQVALMA 291 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH----------cCCcEEEEC
Confidence 344556677799 7999999999999865 35899999999999999999988764 356799999
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHH---HHHHHHc-CCceeecChHHHHHHHHcCCCCCCCeeEEEEecc
Q 009512 218 PTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR---QVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEV 293 (533)
Q Consensus 218 Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEa 293 (533)
||++||.|+++.+++++..+++++..+.|+..... ....+.. .++|+|+||+.+.+ ...+.++++||+||+
T Consensus 292 PT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEa 366 (630)
T TIGR00643 292 PTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQ 366 (630)
T ss_pred CHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEech
Confidence 99999999999999999888999999999977654 3334443 47999999987743 356788999999999
Q ss_pred chhhhcchHHHHHHHHHhCC---CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHH
Q 009512 294 DCMLQRGFRDQVMQIFRAIS---LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKL 370 (533)
Q Consensus 294 h~~~~~~~~~~i~~i~~~~~---~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 370 (533)
|++... +...+..... .+++++||||+.+....+......+...+.. .......+.... .... ....+
T Consensus 367 H~fg~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~--~p~~r~~i~~~~--~~~~-~~~~~ 437 (630)
T TIGR00643 367 HRFGVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDE--LPPGRKPITTVL--IKHD-EKDIV 437 (630)
T ss_pred hhccHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeecc--CCCCCCceEEEE--eCcc-hHHHH
Confidence 986432 2222333333 6899999999765443332221112222211 111112222222 2222 23455
Q ss_pred HHHHHhccCCCCCEEEEEcCcc--------cHHHHHHHHHhh-cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 009512 371 FDILMSKQHFTPPAVVYVGSRL--------GADLLSNAISVT-TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI 441 (533)
Q Consensus 371 ~~~l~~~~~~~~~~lIF~~s~~--------~~~~l~~~l~~~-~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~ 441 (533)
++.+......+.+++|||+..+ .++.+++.|... .++.+..+||+|++.+|..+++.|++|+.+|||||++
T Consensus 438 ~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v 517 (630)
T TIGR00643 438 YEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTV 517 (630)
T ss_pred HHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECce
Confidence 6665554455678999999764 455667777633 4678999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEcCCCC-CHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCCCCHHHHhchh
Q 009512 442 LGRGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRY 517 (533)
Q Consensus 442 ~~~Gldi~~v~~VI~~~~p~-s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~~~ 517 (533)
+++|+|+|++++||+++.|. +...|.||+||+||.|..|.|++++.....+...+-++.+......+.-.-.++..
T Consensus 518 ie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~rl~~~~~~~dgf~iae~dl~~ 594 (630)
T TIGR00643 518 IEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKRLRVMADTLDGFVIAEEDLEL 594 (630)
T ss_pred eecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHHHHHHHhhcccHHHHHHHHhc
Confidence 99999999999999999986 68889999999999999999999994333344444456776655555434444443
No 51
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=4e-42 Score=365.91 Aligned_cols=341 Identities=21% Similarity=0.293 Sum_probs=266.8
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHH
Q 009512 142 LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
|++.+.+.+... |..|||.|.+|||.+.+|+|+|++||||||||+++.+|++..+.... ......+-.+||++|.++
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~--~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG--KGKLEDGIYALYISPLKA 84 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc--CCCCCCceEEEEeCcHHH
Confidence 788889999888 99999999999999999999999999999999999999999998742 112234578999999999
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCC--CCCCCeeEEEEeccchhhhc
Q 009512 222 LCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD--IELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 222 L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~--~~l~~i~~vVvDEah~~~~~ 299 (533)
|.+.+...++..+..+|+.+..-.|..+........++.++|+|+||+.|.-++.... -.+.++.+||+||+|.+.+.
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~s 164 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAES 164 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcc
Confidence 9999999999999999999988888877777666677779999999999988887643 35889999999999999876
Q ss_pred chHHHHHHHHHhC----CCCcEEEecccCcHHHHHHHHhhcCC--eEEEEeCCCCCCCccceEEEEEecc----hhhHHH
Q 009512 300 GFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKD--IVVVSVGKPNMPNKAVKQLAIWVES----NKKKQK 369 (533)
Q Consensus 300 ~~~~~i~~i~~~~----~~~q~i~~SAT~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~i~~~~~~~~~----~~k~~~ 369 (533)
..+.++.--++++ .+.|.|++|||..+ ....++.+... +..+....... ...+.-.. .... ..-...
T Consensus 165 KRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~-~~~varfL~g~~~~~~Iv~~~~~k-~~~i~v~~-p~~~~~~~~~~~~~ 241 (814)
T COG1201 165 KRGVQLALSLERLRELAGDFQRIGLSATVGP-PEEVAKFLVGFGDPCEIVDVSAAK-KLEIKVIS-PVEDLIYDEELWAA 241 (814)
T ss_pred ccchhhhhhHHHHHhhCcccEEEeehhccCC-HHHHHHHhcCCCCceEEEEcccCC-cceEEEEe-cCCccccccchhHH
Confidence 6666665555554 57899999999864 33344433332 22222211111 11111110 0111 111122
Q ss_pred HHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC
Q 009512 370 LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL 449 (533)
Q Consensus 370 l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~ 449 (533)
+++.+.+.......+|||+||+..|+.++..|++..+..+..+||.++.+.|..+.+.|++|+++++|||+.++-|||+.
T Consensus 242 ~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG 321 (814)
T COG1201 242 LYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIG 321 (814)
T ss_pred HHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccC
Confidence 33333333333447999999999999999999966668999999999999999999999999999999999999999999
Q ss_pred CccEEEEcCCCCCHhHHHHhhcccCC-CCCccEEEEEecC
Q 009512 450 GVRQVIIFDMPNSIKEYVHQIGRASQ-MGDEGTAIVFVNE 488 (533)
Q Consensus 450 ~v~~VI~~~~p~s~~~y~qriGR~gR-~g~~g~~~~l~~~ 488 (533)
+++.||+++.|.++..++||+||+|+ .|....++++...
T Consensus 322 ~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 322 DIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999995 4555667666665
No 52
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=9.7e-42 Score=350.77 Aligned_cols=332 Identities=25% Similarity=0.372 Sum_probs=257.3
Q ss_pred HHHHHc-CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009512 148 QNIEAA-GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 148 ~~l~~~-g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
..|+.. ||..++|-|.++|..+++|+|+++..|||+||+++|.+|++-. .+.+|||.|..+|....
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------------~G~TLVVSPLiSLM~DQ 73 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------------EGLTLVVSPLISLMKDQ 73 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------------CCCEEEECchHHHHHHH
Confidence 445554 9999999999999999999999999999999999999999742 23699999999998877
Q ss_pred HHHHHHHhcCCCCeEEEEEcCCchHHHH---HHHHcC-CceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcc--
Q 009512 227 EEQAKLLGKGLPFKTALVVGGDAMARQV---YRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-- 300 (533)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~-- 300 (533)
...++.. |+....+.+..+..+.. ..+..+ .++++-+|++|..-.....+.-..+.++||||||++.+||
T Consensus 74 V~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhd 149 (590)
T COG0514 74 VDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHD 149 (590)
T ss_pred HHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCc
Confidence 7777665 56777777765544432 233333 8999999999855433333334568899999999999998
Q ss_pred hHHHHHHHHH---hCCCCcEEEecccCcHHHHHHHHhhcC-CeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHh
Q 009512 301 FRDQVMQIFR---AISLPQILMYSATISQEVEKMSSSISK-DIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMS 376 (533)
Q Consensus 301 ~~~~i~~i~~---~~~~~q~i~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~ 376 (533)
|++.|..+-. .+++..++++|||-++.+..-+...+. ....+.....+.++ +.-.+.... .-...+. ++..
T Consensus 150 FRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpN--i~~~v~~~~--~~~~q~~-fi~~ 224 (590)
T COG0514 150 FRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPN--LALKVVEKG--EPSDQLA-FLAT 224 (590)
T ss_pred cCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCch--hhhhhhhcc--cHHHHHH-HHHh
Confidence 9988887654 447889999999998877665554332 22111111222222 111111111 1112222 3332
Q ss_pred -ccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEE
Q 009512 377 -KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVI 455 (533)
Q Consensus 377 -~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI 455 (533)
......+.||||.|++.++.++..|. ..|+.+..|||||+.++|..+.+.|..++++|+|||..+++|||.|++++||
T Consensus 225 ~~~~~~~~GIIYc~sRk~~E~ia~~L~-~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfVi 303 (590)
T COG0514 225 VLPQLSKSGIIYCLTRKKVEELAEWLR-KNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVI 303 (590)
T ss_pred hccccCCCeEEEEeeHHhHHHHHHHHH-HCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEE
Confidence 23445679999999999999999998 6699999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHH
Q 009512 456 IFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILK 502 (533)
Q Consensus 456 ~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~ 502 (533)
|||+|.|++.|.|-+|||||.|.+..|++|+++.|......+++.-+
T Consensus 304 H~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~ 350 (590)
T COG0514 304 HYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSK 350 (590)
T ss_pred EecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999887777776543
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2e-40 Score=373.95 Aligned_cols=307 Identities=19% Similarity=0.252 Sum_probs=220.9
Q ss_pred EEccCCCchhHHHHHHHHHHHHhhhhcc---cCCCCCceEEEEcccHHHHHHHHHHHHHHh------------cCCCCeE
Q 009512 177 VSANTGSGKTASFLVPVISQCANIRLHH---SQNQKNPLAMVLTPTRELCIQVEEQAKLLG------------KGLPFKT 241 (533)
Q Consensus 177 i~a~TGsGKT~~~llp~l~~l~~~~~~~---~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~------------~~~~~~~ 241 (533)
|+||||||||++|.+|++..+....... .....+.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987532110 011246789999999999999998876421 1246788
Q ss_pred EEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcC-CCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-----CCC
Q 009512 242 ALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-DIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-----SLP 315 (533)
Q Consensus 242 ~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-----~~~ 315 (533)
....|+.+..++...+.+.++|+|+||++|..++.++ ...++++++|||||+|.+.+..++..+...++++ .+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 8888888887766666678999999999999887654 3468999999999999998764444444444333 467
Q ss_pred cEEEecccCcHHHHHHHHhhcC-CeEEEEeCCCCCCCccceEEEEEecchh--------------------hHHHHHHHH
Q 009512 316 QILMYSATISQEVEKMSSSISK-DIVVVSVGKPNMPNKAVKQLAIWVESNK--------------------KKQKLFDIL 374 (533)
Q Consensus 316 q~i~~SAT~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~i~~~~~~~~~~~--------------------k~~~l~~~l 374 (533)
|+|++|||+++ .++++..+.. .++.+.. ........+. ......... ....+...+
T Consensus 161 QrIgLSATI~n-~eevA~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRS-ASDVAAFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCC-HHHHHHHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 99999999987 4556555443 3444422 1111111121 111111100 000111111
Q ss_pred HhccCCCCCEEEEEcCcccHHHHHHHHHhhcC--------------------------------CeEEEEcCCCCHHHHH
Q 009512 375 MSKQHFTPPAVVYVGSRLGADLLSNAISVTTG--------------------------------MKALSIHGEKPMKERR 422 (533)
Q Consensus 375 ~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~--------------------------------~~~~~ih~~~~~~~r~ 422 (533)
........++||||||+..|+.++..|++... ..+..+||++++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 11122356899999999999999999974211 2256899999999999
Q ss_pred HHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCC-CCccEEEEEe
Q 009512 423 EIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQM-GDEGTAIVFV 486 (533)
Q Consensus 423 ~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~-g~~g~~~~l~ 486 (533)
.+++.|++|++++||||+++++|||++++++||+++.|.|+.+|+||+||+||. |..+.++++.
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 999999999999999999999999999999999999999999999999999996 3334555333
No 54
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.4e-40 Score=369.08 Aligned_cols=301 Identities=22% Similarity=0.297 Sum_probs=241.1
Q ss_pred HHHHHc-CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009512 148 QNIEAA-GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 148 ~~l~~~-g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
+.+.+. |+ .|+++|.++++.++.|+|++++||||||||+ |.++++..+. ..++++|||+||++|+.|+
T Consensus 71 ~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~---------~~g~~alIL~PTreLa~Qi 139 (1176)
T PRK09401 71 KFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLA---------KKGKKSYIIFPTRLLVEQV 139 (1176)
T ss_pred HHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHH---------hcCCeEEEEeccHHHHHHH
Confidence 344444 77 8999999999999999999999999999996 5566554442 2367899999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEEcCCch-----HHHHHHHHc-CCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhh--
Q 009512 227 EEQAKLLGKGLPFKTALVVGGDAM-----ARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ-- 298 (533)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~gg~~~-----~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~-- 298 (533)
.+.++.++...++.+..++|+... ..+...+.. +++|+|+||++|.+.+. .+....+++||+||||+|++
T Consensus 140 ~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~ 217 (1176)
T PRK09401 140 VEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSS 217 (1176)
T ss_pred HHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcc
Confidence 999999998888888777776542 333444554 48999999999998876 34566799999999999986
Q ss_pred ---------cchH-HHHHHHHHhCC-------------------------CCcEEEecccCcHH-HHHHHHhhcCCeEEE
Q 009512 299 ---------RGFR-DQVMQIFRAIS-------------------------LPQILMYSATISQE-VEKMSSSISKDIVVV 342 (533)
Q Consensus 299 ---------~~~~-~~i~~i~~~~~-------------------------~~q~i~~SAT~~~~-~~~~~~~~~~~~~~i 342 (533)
+||. .++..++..++ ..|++++|||+++. +.. .++.++..+
T Consensus 218 k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~ 294 (1176)
T PRK09401 218 KNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGF 294 (1176)
T ss_pred cchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceE
Confidence 6774 56766666553 57899999999864 332 233455556
Q ss_pred EeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCccc---HHHHHHHHHhhcCCeEEEEcCCCCHH
Q 009512 343 SVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG---ADLLSNAISVTTGMKALSIHGEKPMK 419 (533)
Q Consensus 343 ~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~---~~~l~~~l~~~~~~~~~~ih~~~~~~ 419 (533)
.++.......++.+.+.... .+...+.+++... +.++||||+++.. ++.+++.|+ ..|+.+..+||+|
T Consensus 295 ~v~~~~~~~rnI~~~yi~~~--~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~-~~gi~v~~~hg~l--- 365 (1176)
T PRK09401 295 EVGSPVFYLRNIVDSYIVDE--DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLE-DLGINAELAISGF--- 365 (1176)
T ss_pred EecCcccccCCceEEEEEcc--cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHH-HCCCcEEEEeCcH---
Confidence 66666666677887776554 5666777777543 3479999999888 999999998 7899999999999
Q ss_pred HHHHHHHHHhcCCCcEEEE----eccccccCCCCC-ccEEEEcCCCC------CHhHHHHhhcccCC
Q 009512 420 ERREIMRSFLVGEVPVIVA----TGILGRGVELLG-VRQVIIFDMPN------SIKEYVHQIGRASQ 475 (533)
Q Consensus 420 ~r~~~~~~f~~g~~~VLva----T~~~~~Gldi~~-v~~VI~~~~p~------s~~~y~qriGR~gR 475 (533)
...++.|++|+++|||| |++++||||+|+ +++||||++|. ..+.|.||+||+..
T Consensus 366 --~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 366 --ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred --HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 23459999999999999 689999999999 89999999998 67889999999974
No 55
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.5e-39 Score=346.54 Aligned_cols=312 Identities=17% Similarity=0.172 Sum_probs=229.1
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHH---------HHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009512 160 PVQMQAIPSALSGKSLLVSANTGSGKTAS---------FLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 160 ~~Q~~~i~~i~~g~~vli~a~TGsGKT~~---------~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
.+|.++++.++.+++++++|+||||||++ |++|.+..+.... .....++++|++|||+||.|+...+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~----~~~~~~~ilvt~PrreLa~qi~~~i 242 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID----PNFIERPIVLSLPRVALVRLHSITL 242 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc----cccCCcEEEEECcHHHHHHHHHHHH
Confidence 58999999999999999999999999986 3334443332100 1234568999999999999988888
Q ss_pred HHHhcC---CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHH
Q 009512 231 KLLGKG---LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQ 307 (533)
Q Consensus 231 ~~~~~~---~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~ 307 (533)
.+.... .+..+...+||... .+.....++.+|+|+|++.. ...+.++++||+||||++...+ ..+..
T Consensus 243 ~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~-------l~~L~~v~~VVIDEaHEr~~~~--DllL~ 312 (675)
T PHA02653 243 LKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT-------LNKLFDYGTVIIDEVHEHDQIG--DIIIA 312 (675)
T ss_pred HHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc-------ccccccCCEEEccccccCccch--hHHHH
Confidence 765433 24567788998763 22222234678999997521 1247889999999999987765 44555
Q ss_pred HHHhC--CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecc---------hhhHHHHHHHHHh
Q 009512 308 IFRAI--SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES---------NKKKQKLFDILMS 376 (533)
Q Consensus 308 i~~~~--~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~---------~~k~~~l~~~l~~ 376 (533)
++... ..+|+++||||++.++..+. .++.++..+.+... ....+.+.+..... ......+...+..
T Consensus 313 llk~~~~~~rq~ILmSATl~~dv~~l~-~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~ 389 (675)
T PHA02653 313 VARKHIDKIRSLFLMTATLEDDRDRIK-EFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKK 389 (675)
T ss_pred HHHHhhhhcCEEEEEccCCcHhHHHHH-HHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHH
Confidence 55443 23589999999998887774 56667766666432 22334444432110 1112233444433
Q ss_pred cc-CCCCCEEEEEcCcccHHHHHHHHHhhc-CCeEEEEcCCCCHHHHHHHHHHH-hcCCCcEEEEeccccccCCCCCccE
Q 009512 377 KQ-HFTPPAVVYVGSRLGADLLSNAISVTT-GMKALSIHGEKPMKERREIMRSF-LVGEVPVIVATGILGRGVELLGVRQ 453 (533)
Q Consensus 377 ~~-~~~~~~lIF~~s~~~~~~l~~~l~~~~-~~~~~~ih~~~~~~~r~~~~~~f-~~g~~~VLvaT~~~~~Gldi~~v~~ 453 (533)
.. ..++.+|||++++.+++.+++.|.+.. ++.+..+||++++. +++++.| ++|+.+|||||+++++|||||++++
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~ 467 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATH 467 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeE
Confidence 22 234689999999999999999998442 78999999999974 4667777 6899999999999999999999999
Q ss_pred EEEcC---CCC---------CHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009512 454 VIIFD---MPN---------SIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 454 VI~~~---~p~---------s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
||+++ .|. |.+.|+||.|||||. ++|.|+.|+++.+.
T Consensus 468 VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 468 VYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred EEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 99998 565 889999999999999 79999999997754
No 56
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.3e-38 Score=334.16 Aligned_cols=318 Identities=19% Similarity=0.227 Sum_probs=251.8
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009512 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 154 g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
|. .|+|+|..+++.++.|+ |+.+.||+|||++|.+|++.+.. .++.++|++||++||.|.++++..+
T Consensus 101 g~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al----------~G~~v~VvTptreLA~qdae~~~~l 167 (656)
T PRK12898 101 GQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL----------AGLPVHVITVNDYLAERDAELMRPL 167 (656)
T ss_pred CC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh----------cCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 44 79999999999999999 99999999999999999998754 3678999999999999999999999
Q ss_pred hcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcCC-------------------------CCCCCeeE
Q 009512 234 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD-------------------------IELDDIRM 287 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~-------------------------~~l~~i~~ 287 (533)
...+++++.+++||.+. +..+...+++|+++|...| .++++.+- .-...+.+
T Consensus 168 ~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 168 YEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred HhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 99999999999999764 3355567899999999888 55554321 11356789
Q ss_pred EEEeccchhh-h--------------c---chHHHHHHHHHhC-------------------------------------
Q 009512 288 FVLDEVDCML-Q--------------R---GFRDQVMQIFRAI------------------------------------- 312 (533)
Q Consensus 288 vVvDEah~~~-~--------------~---~~~~~i~~i~~~~------------------------------------- 312 (533)
.||||+|.++ | . .+......+...+
T Consensus 246 aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~ 325 (656)
T PRK12898 246 AIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWR 325 (656)
T ss_pred eEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcc
Confidence 9999999864 0 0 0111111111100
Q ss_pred --------------------CC----------------------------------------------------------
Q 009512 313 --------------------SL---------------------------------------------------------- 314 (533)
Q Consensus 313 --------------------~~---------------------------------------------------------- 314 (533)
.+
T Consensus 326 ~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~F 405 (656)
T PRK12898 326 GAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFF 405 (656)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHH
Confidence 00
Q ss_pred ---CcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCc
Q 009512 315 ---PQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSR 391 (533)
Q Consensus 315 ---~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~ 391 (533)
.++.+||||.+....++...+..+++.+....+... ...+.+.++....|...|.+.+......+.++||||+++
T Consensus 406 r~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r--~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~ 483 (656)
T PRK12898 406 RRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQR--RHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSV 483 (656)
T ss_pred HhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccc--eecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 046679999988888888888888877765554322 233445566777888888888877554567899999999
Q ss_pred ccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC---Ccc-----EEEEcCCCCCH
Q 009512 392 LGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL---GVR-----QVIIFDMPNSI 463 (533)
Q Consensus 392 ~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~---~v~-----~VI~~~~p~s~ 463 (533)
..++.++..|. ..|+++..+||++. +|+..+..|..+...|+|||++++||+||+ ++. +||+|++|.|.
T Consensus 484 ~~se~L~~~L~-~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~ 560 (656)
T PRK12898 484 AASERLSALLR-EAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSA 560 (656)
T ss_pred HHHHHHHHHHH-HCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCH
Confidence 99999999998 78999999999865 455555566666678999999999999999 666 99999999999
Q ss_pred hHHHHhhcccCCCCCccEEEEEecCcCH
Q 009512 464 KEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 464 ~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
..|+||+||+||.|.+|.+++|++.+|.
T Consensus 561 r~y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 561 RIDRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHHHHhcccccCCCCCeEEEEEechhHH
Confidence 9999999999999999999999998664
No 57
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.8e-38 Score=309.47 Aligned_cols=323 Identities=23% Similarity=0.253 Sum_probs=237.9
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 155 ~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
..+++.+|.......+.+ |+|++.|||.|||+++++.+...+.. ..+ ++|+++||+.|+.|..+.++++.
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~--------~~~-kvlfLAPTKPLV~Qh~~~~~~v~ 82 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRW--------FGG-KVLFLAPTKPLVLQHAEFCRKVT 82 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHh--------cCC-eEEEecCCchHHHHHHHHHHHHh
Confidence 457889999988887776 99999999999999999888887765 233 89999999999999999999987
Q ss_pred cCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcc-hHHHHHHHHHhCC
Q 009512 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-FRDQVMQIFRAIS 313 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~-~~~~i~~i~~~~~ 313 (533)
..-+..++.+.|.. .++.........+|+|+||+.+.+-+..+.+++.++.++|+||||+-.... +-......+..-.
T Consensus 83 ~ip~~~i~~ltGev-~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k 161 (542)
T COG1111 83 GIPEDEIAALTGEV-RPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK 161 (542)
T ss_pred CCChhheeeecCCC-ChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhcc
Confidence 65444555555544 444445556678999999999999999999999999999999999976433 3333334555557
Q ss_pred CCcEEEecccCcHHHHH---HHHhhcCCeEEEEeCCCC------------------------------------------
Q 009512 314 LPQILMYSATISQEVEK---MSSSISKDIVVVSVGKPN------------------------------------------ 348 (533)
Q Consensus 314 ~~q~i~~SAT~~~~~~~---~~~~~~~~~~~i~~~~~~------------------------------------------ 348 (533)
++.++++|||+..+.+. ....+.-..+.+......
T Consensus 162 ~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~ 241 (542)
T COG1111 162 NPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKE 241 (542)
T ss_pred CceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999996422221 111111111111100000
Q ss_pred -------C------------------CC--c-------------------------cce---------------------
Q 009512 349 -------M------------------PN--K-------------------------AVK--------------------- 355 (533)
Q Consensus 349 -------~------------------~~--~-------------------------~i~--------------------- 355 (533)
. .. . .+.
T Consensus 242 ~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a 321 (542)
T COG1111 242 LGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAA 321 (542)
T ss_pred cCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHH
Confidence 0 00 0 000
Q ss_pred -----------------EEEEEecchhhHHHHHHHHHhcc--CCCCCEEEEEcCcccHHHHHHHHHhhcCCeEE--E---
Q 009512 356 -----------------QLAIWVESNKKKQKLFDILMSKQ--HFTPPAVVYVGSRLGADLLSNAISVTTGMKAL--S--- 411 (533)
Q Consensus 356 -----------------~~~~~~~~~~k~~~l~~~l~~~~--~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~--~--- 411 (533)
......-...|...+.+++.+.. ..+.++|||++.+.+|+.+.++|. ..+..+. +
T Consensus 322 ~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~-~~~~~~~~rFiGQ 400 (542)
T COG1111 322 KSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLK-KIGIKARVRFIGQ 400 (542)
T ss_pred HHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHH-hcCCcceeEEeec
Confidence 00000011223344555555433 445699999999999999999998 5555542 2
Q ss_pred ----EcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEec
Q 009512 412 ----IHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN 487 (533)
Q Consensus 412 ----ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~ 487 (533)
...||+|.++.++++.|++|+++|||||+++++|||||.++.||+|++-.|...++||.||+||. +.|.+++|+.
T Consensus 401 a~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt 479 (542)
T COG1111 401 ASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVT 479 (542)
T ss_pred cccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEe
Confidence 23589999999999999999999999999999999999999999999999999999999999997 8999999998
Q ss_pred CcC
Q 009512 488 EEN 490 (533)
Q Consensus 488 ~~~ 490 (533)
+++
T Consensus 480 ~gt 482 (542)
T COG1111 480 EGT 482 (542)
T ss_pred cCc
Confidence 873
No 58
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=1.4e-38 Score=335.74 Aligned_cols=306 Identities=14% Similarity=0.145 Sum_probs=222.3
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 155 ~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
...|+++|.++++.++.+++.++++|||+|||+++...+ ..+.. ....++|||+||++|+.||.+.++++.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~--------~~~~~vLilvpt~eL~~Q~~~~l~~~~ 182 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLE--------NYEGKVLIIVPTTSLVTQMIDDFVDYR 182 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHh--------cCCCeEEEEECcHHHHHHHHHHHHHhc
Confidence 458999999999999999999999999999999765422 22222 223479999999999999999999987
Q ss_pred cCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-C
Q 009512 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-S 313 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~ 313 (533)
......+..+.+|.... .+.+|+|+||+++.+... ..++++++||+||||++... .+..++..+ +
T Consensus 183 ~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~ 248 (501)
T PHA02558 183 LFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDN 248 (501)
T ss_pred cccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhc
Confidence 54334555666665432 347899999999976432 24678999999999998754 455666666 4
Q ss_pred CCcEEEecccCcHHHHHH---HHhhcCCeEEEEeCCC------------------CCCCc--------cceEEE-EEecc
Q 009512 314 LPQILMYSATISQEVEKM---SSSISKDIVVVSVGKP------------------NMPNK--------AVKQLA-IWVES 363 (533)
Q Consensus 314 ~~q~i~~SAT~~~~~~~~---~~~~~~~~~~i~~~~~------------------~~~~~--------~i~~~~-~~~~~ 363 (533)
.+++++||||+++..... ...+ .+ +...+... ..+.. ...+.. .....
T Consensus 249 ~~~~lGLTATp~~~~~~~~~~~~~f-G~-i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 326 (501)
T PHA02558 249 CKFKFGLTGSLRDGKANILQYVGLF-GD-IFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSH 326 (501)
T ss_pred cceEEEEeccCCCccccHHHHHHhh-CC-ceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhcc
Confidence 678999999997532211 1111 11 11110000 00000 000000 01122
Q ss_pred hhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe-ccc
Q 009512 364 NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT-GIL 442 (533)
Q Consensus 364 ~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT-~~~ 442 (533)
..+...+..++......+.++||||.+.++++.|++.|. ..+.++..+||++++++|..+++.|++|...||||| +++
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~-~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l 405 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLK-KVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVF 405 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHH-HcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEccee
Confidence 233344444544444456789999999999999999998 689999999999999999999999999999999998 899
Q ss_pred cccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEe
Q 009512 443 GRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFV 486 (533)
Q Consensus 443 ~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~ 486 (533)
++|+|+|++++||+++++.|...|+||+||++|.+..+...+++
T Consensus 406 ~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 406 STGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred ccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 99999999999999999999999999999999987655444444
No 59
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=4.2e-39 Score=347.58 Aligned_cols=335 Identities=21% Similarity=0.289 Sum_probs=260.5
Q ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcc
Q 009512 140 CSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 140 ~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~-~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
..+++.+.+.++..|+.++++.|+.++...+ .++|+||++|||||||+++++.+++.+.+ .+.+++|+||
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~---------~~~k~vYivP 84 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLE---------GGGKVVYIVP 84 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHh---------cCCcEEEEeC
Confidence 3477888888888899888888888887765 66999999999999999999999998875 2677999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhh
Q 009512 219 TRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 219 tr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~ 298 (533)
+++||.+.+++++++ ..+|+++....|+...... -..+++|+|+||++|..++++....+..+++||+||+|.+.+
T Consensus 85 lkALa~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d 160 (766)
T COG1204 85 LKALAEEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGD 160 (766)
T ss_pred hHHHHHHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCC
Confidence 999999999999844 5569999999998775552 225699999999999999988777888999999999999988
Q ss_pred cchHHHHHHHHHhC----CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCC-CCCccceEEEEEecchh------hH
Q 009512 299 RGFRDQVMQIFRAI----SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPN-MPNKAVKQLAIWVESNK------KK 367 (533)
Q Consensus 299 ~~~~~~i~~i~~~~----~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~------k~ 367 (533)
...++.++.|..++ ...|++++|||+|+ ..+++.++..+++........ .......+.+....... ..
T Consensus 161 ~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN-~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~ 239 (766)
T COG1204 161 RTRGPVLESIVARMRRLNELIRIVGLSATLPN-AEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLID 239 (766)
T ss_pred cccCceehhHHHHHHhhCcceEEEEEeeecCC-HHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccch
Confidence 76778888877776 34699999999998 566777766665521111111 11111223333333222 33
Q ss_pred HHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhc------------------------------------CCeEEE
Q 009512 368 QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT------------------------------------GMKALS 411 (533)
Q Consensus 368 ~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~------------------------------------~~~~~~ 411 (533)
...++.+......++++||||+|+..+...++.++... ...+..
T Consensus 240 ~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gvaf 319 (766)
T COG1204 240 NLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAF 319 (766)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccc
Confidence 55666666666778899999999999999888886200 112458
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEE----cC-----CCCCHhHHHHhhcccCCCCC--cc
Q 009512 412 IHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FD-----MPNSIKEYVHQIGRASQMGD--EG 480 (533)
Q Consensus 412 ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~~-----~p~s~~~y~qriGR~gR~g~--~g 480 (533)
+|+|++.++|..+.+.|+.|.++||+||+++++|+|+|.-.+||- |+ .+.+.-+|+||+|||||.|- .|
T Consensus 320 HhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 320 HHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred cccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCC
Confidence 999999999999999999999999999999999999996544442 55 45678999999999999885 47
Q ss_pred EEEEEecC
Q 009512 481 TAIVFVNE 488 (533)
Q Consensus 481 ~~~~l~~~ 488 (533)
.++++.+.
T Consensus 400 ~~~i~~~~ 407 (766)
T COG1204 400 EAIILATS 407 (766)
T ss_pred cEEEEecC
Confidence 78777743
No 60
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=9.7e-39 Score=366.46 Aligned_cols=329 Identities=18% Similarity=0.246 Sum_probs=252.9
Q ss_pred HHHHHHHH-cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHH
Q 009512 145 KLLQNIEA-AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELC 223 (533)
Q Consensus 145 ~l~~~l~~-~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~ 223 (533)
++.+.+++ .|| .|+++|.++++.+++|+|++++||||||||+.++++++... ..+.++|||+||++|+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~----------~~g~~aLVl~PTreLa 135 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA----------LKGKKCYIILPTTLLV 135 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH----------hcCCeEEEEECHHHHH
Confidence 44556666 699 69999999999999999999999999999996555554332 2356899999999999
Q ss_pred HHHHHHHHHHhcCC--CCeEEEEEcCCchHHHH---HHHHcC-CceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009512 224 IQVEEQAKLLGKGL--PFKTALVVGGDAMARQV---YRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 224 ~Q~~~~~~~~~~~~--~~~~~~~~gg~~~~~~~---~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
.|+.+.++.++..+ +.++..++||.+...+. ..+..+ ++|+|+||++|.+.+... ...++++||+||||+|+
T Consensus 136 ~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 136 KQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceecc
Confidence 99999999988765 45667788887766553 344554 899999999998776542 12678999999999998
Q ss_pred h-----------cchHHHHHH----HHH----------------------hC-CCCc-EEEecccCcHHHHHHHHhhcCC
Q 009512 298 Q-----------RGFRDQVMQ----IFR----------------------AI-SLPQ-ILMYSATISQEVEKMSSSISKD 338 (533)
Q Consensus 298 ~-----------~~~~~~i~~----i~~----------------------~~-~~~q-~i~~SAT~~~~~~~~~~~~~~~ 338 (533)
+ +||.+++.. ++. .+ +.++ ++++|||++.... . ..++.+
T Consensus 214 ~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~-~-~~l~~~ 291 (1638)
T PRK14701 214 KASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD-R-VKLYRE 291 (1638)
T ss_pred ccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH-H-HHHhhc
Confidence 6 588888764 432 12 2344 5679999985311 1 123456
Q ss_pred eEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCccc---HHHHHHHHHhhcCCeEEEEcCC
Q 009512 339 IVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG---ADLLSNAISVTTGMKALSIHGE 415 (533)
Q Consensus 339 ~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~---~~~l~~~l~~~~~~~~~~ih~~ 415 (533)
+..+.++.......++.+.+...+...+ ..+.+++... +..+||||+++.. |+.+++.|. ..|+.+..+||+
T Consensus 292 ~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~-~~Gi~a~~~h~~ 366 (1638)
T PRK14701 292 LLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLL-EDGFKIELVSAK 366 (1638)
T ss_pred CeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHH-HCCCeEEEecch
Confidence 6677777766666777777776654444 5677777554 3579999999886 589999998 789999999995
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEe----ccccccCCCCC-ccEEEEcCCCC---CHhHHHHhh-------------cccC
Q 009512 416 KPMKERREIMRSFLVGEVPVIVAT----GILGRGVELLG-VRQVIIFDMPN---SIKEYVHQI-------------GRAS 474 (533)
Q Consensus 416 ~~~~~r~~~~~~f~~g~~~VLvaT----~~~~~Gldi~~-v~~VI~~~~p~---s~~~y~qri-------------GR~g 474 (533)
|...++.|++|+++||||| ++++||||+|+ +++|||||+|. +++.|.|-. ||+|
T Consensus 367 -----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~ 441 (1638)
T PRK14701 367 -----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEEL 441 (1638)
T ss_pred -----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhc
Confidence 8899999999999999999 58999999999 99999999999 888776655 9999
Q ss_pred CCCCccEEEEEecCcCHHHHHHHH
Q 009512 475 QMGDEGTAIVFVNEENKNLFQELV 498 (533)
Q Consensus 475 R~g~~g~~~~l~~~~~~~~~~~l~ 498 (533)
|.|..+.++..+...+...++.++
T Consensus 442 ~~g~~~~~~~~~~~~~~~~~~~~l 465 (1638)
T PRK14701 442 KEGIPIEGVLDVFPEDVEFLRSIL 465 (1638)
T ss_pred ccCCcchhHHHhHHHHHHHHHHHh
Confidence 999887777444444444444333
No 61
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.9e-38 Score=342.69 Aligned_cols=304 Identities=19% Similarity=0.260 Sum_probs=230.7
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH-HHhcCCCC
Q 009512 161 VQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLGKGLPF 239 (533)
Q Consensus 161 ~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~-~~~~~~~~ 239 (533)
+-.+.+..+.++++++++|+||||||++|.++++.... .+++++|+.|||++|.|+...+. .+....+.
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 34456677778899999999999999999999887642 24579999999999999988774 55555556
Q ss_pred eEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccc-hhhhcchHHHH-HHHHHhC-CCCc
Q 009512 240 KTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD-CMLQRGFRDQV-MQIFRAI-SLPQ 316 (533)
Q Consensus 240 ~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah-~~~~~~~~~~i-~~i~~~~-~~~q 316 (533)
.+...+++... .....+|+|+|||+|++++... ..+.++++|||||+| ++++.++.-.+ ..+...+ ++.|
T Consensus 76 ~VGy~vr~~~~------~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlq 148 (819)
T TIGR01970 76 TVGYRVRGENK------VSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLK 148 (819)
T ss_pred EEEEEEccccc------cCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCce
Confidence 66665555432 2345789999999999998864 479999999999999 57776654333 3444444 5789
Q ss_pred EEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhH-----HHHHHHHHhccCCCCCEEEEEcCc
Q 009512 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK-----QKLFDILMSKQHFTPPAVVYVGSR 391 (533)
Q Consensus 317 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~~~lIF~~s~ 391 (533)
+|+||||++... + ..++.+...+.......+ +.+.+.......+. ..+..++. ...+.+|||++++
T Consensus 149 lIlmSATl~~~~--l-~~~l~~~~vI~~~gr~~p---Ve~~y~~~~~~~~~~~~v~~~l~~~l~---~~~g~iLVFlpg~ 219 (819)
T TIGR01970 149 ILAMSATLDGER--L-SSLLPDAPVVESEGRSFP---VEIRYLPLRGDQRLEDAVSRAVEHALA---SETGSILVFLPGQ 219 (819)
T ss_pred EEEEeCCCCHHH--H-HHHcCCCcEEEecCccee---eeeEEeecchhhhHHHHHHHHHHHHHH---hcCCcEEEEECCH
Confidence 999999999753 3 344444333444332222 34444433333222 12223332 2346899999999
Q ss_pred ccHHHHHHHHHhh--cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCC--------
Q 009512 392 LGADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN-------- 461 (533)
Q Consensus 392 ~~~~~l~~~l~~~--~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~-------- 461 (533)
.+++.++..|.+. .++.+..+||+|++++|..+++.|++|..+|||||+++++|||||+|++||+++.|.
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 9999999999743 478899999999999999999999999999999999999999999999999999874
Q ss_pred ----------CHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009512 462 ----------SIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 462 ----------s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
|-..|.||.|||||. .+|.||.|+++.+.
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 345699999999999 79999999987654
No 62
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.2e-37 Score=351.29 Aligned_cols=290 Identities=24% Similarity=0.334 Sum_probs=222.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHH
Q 009512 145 KLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 224 (533)
Q Consensus 145 ~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~ 224 (533)
.+.+.+.+.....|+++|..+++.++.|++++++||||||||+ |.+|++..+.. .++++|||+||++||.
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~---------~g~~vLIL~PTreLa~ 135 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK---------KGKRCYIILPTTLLVI 135 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh---------cCCeEEEEeCHHHHHH
Confidence 3445555554458999999999999999999999999999997 66777655432 3678999999999999
Q ss_pred HHHHHHHHHhcCCCCeEE---EEEcCCchHHH---HHHHHc-CCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009512 225 QVEEQAKLLGKGLPFKTA---LVVGGDAMARQ---VYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 225 Q~~~~~~~~~~~~~~~~~---~~~gg~~~~~~---~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
|+.+.++.+....++... .++||.+...+ ...+.+ +++|+|+||++|.+.+..-. . +++++|+||||+|+
T Consensus 136 Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L 212 (1171)
T TIGR01054 136 QVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALL 212 (1171)
T ss_pred HHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhh
Confidence 999999999887665543 35677766543 334444 49999999999988776522 2 89999999999999
Q ss_pred h-----------cchHHH-HHHHHH----------------------hC-CCCc--EEEeccc-CcHHHHHHHHhhcCCe
Q 009512 298 Q-----------RGFRDQ-VMQIFR----------------------AI-SLPQ--ILMYSAT-ISQEVEKMSSSISKDI 339 (533)
Q Consensus 298 ~-----------~~~~~~-i~~i~~----------------------~~-~~~q--~i~~SAT-~~~~~~~~~~~~~~~~ 339 (533)
+ +||..+ +..++. .+ ...| ++++||| +|..+.. .++.++
T Consensus 213 ~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~l 289 (1171)
T TIGR01054 213 KASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFREL 289 (1171)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccc
Confidence 8 677764 444322 22 2234 5678999 5655432 334556
Q ss_pred EEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCc---ccHHHHHHHHHhhcCCeEEEEcCCC
Q 009512 340 VVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSR---LGADLLSNAISVTTGMKALSIHGEK 416 (533)
Q Consensus 340 ~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~---~~~~~l~~~l~~~~~~~~~~ih~~~ 416 (533)
..+.++.......++.+.+..... +...+.+++... +.++||||+++ +.|+.++..|. ..|+.+..+||++
T Consensus 290 l~~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~-~~g~~a~~lhg~~ 363 (1171)
T TIGR01054 290 LGFEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLE-NHGVKAVAYHATK 363 (1171)
T ss_pred cceEecCccccccceEEEEEeccc--HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHH-hCCceEEEEeCCC
Confidence 667776666666677777654433 245566766543 35799999999 99999999998 7799999999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEe----ccccccCCCCC-ccEEEEcCCC
Q 009512 417 PMKERREIMRSFLVGEVPVIVAT----GILGRGVELLG-VRQVIIFDMP 460 (533)
Q Consensus 417 ~~~~r~~~~~~f~~g~~~VLvaT----~~~~~Gldi~~-v~~VI~~~~p 460 (533)
++ .+++.|++|+++||||| ++++||||+|+ +++|||||+|
T Consensus 364 ~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 364 PK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred CH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 73 68999999999999994 89999999999 8999998877
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.1e-38 Score=313.72 Aligned_cols=337 Identities=24% Similarity=0.322 Sum_probs=268.8
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHH-hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEE
Q 009512 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSA-LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i-~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
..+++.+|+.+.+-|+..|+..+.|+|..++.+- +.|+|.+|..+|+||||++..++-+..++. .+.+.|
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~---------~g~Kml 265 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS---------GGKKML 265 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh---------CCCeEE
Confidence 4567889999999999999999999999999885 599999999999999999999888877763 578899
Q ss_pred EEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHH----HHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEE
Q 009512 215 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQV----YRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVL 290 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~----~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVv 290 (533)
|++|..+||+|-++.+++--..+++++..-+|..-....- .......+|||+|++-+..+++.+ ..+.+++.||+
T Consensus 266 fLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVI 344 (830)
T COG1202 266 FLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVI 344 (830)
T ss_pred EEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEe
Confidence 9999999999999999877677888887777753322211 111234799999999997777766 57999999999
Q ss_pred eccchhhhcchHHHHHHHHHh----CCCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhh
Q 009512 291 DEVDCMLQRGFRDQVMQIFRA----ISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKK 366 (533)
Q Consensus 291 DEah~~~~~~~~~~i~~i~~~----~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k 366 (533)
||+|.+-+...++-+.-++.+ ++..|+|++|||..+ -+.+++.+..+.+.+.. .+.+.-.+.+..-++.+|
T Consensus 345 DEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgN-p~elA~~l~a~lV~y~~----RPVplErHlvf~~~e~eK 419 (830)
T COG1202 345 DEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGN-PEELAKKLGAKLVLYDE----RPVPLERHLVFARNESEK 419 (830)
T ss_pred eeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCC-hHHHHHHhCCeeEeecC----CCCChhHeeeeecCchHH
Confidence 999998775444433333333 378999999999976 35677888777776542 222222334443446667
Q ss_pred HHHHHHHHHh------ccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q 009512 367 KQKLFDILMS------KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG 440 (533)
Q Consensus 367 ~~~l~~~l~~------~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~ 440 (533)
.+.+..+... .....+++|||++|+..|..|+.+|. ..|+++..||+|++..+|..+...|.++++.++|+|.
T Consensus 420 ~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~-~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 420 WDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALT-GKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhh-cCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 6666666543 34556799999999999999999998 6799999999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEE----cC-CCCCHhHHHHhhcccCCCCC--ccEEEEEecCc
Q 009512 441 ILGRGVELLGVRQVII----FD-MPNSIKEYVHQIGRASQMGD--EGTAIVFVNEE 489 (533)
Q Consensus 441 ~~~~Gldi~~v~~VI~----~~-~p~s~~~y~qriGR~gR~g~--~g~~~~l~~~~ 489 (533)
.++.|+|+|. +.||+ ++ -+-|+.+|.||.|||||.+. .|.++++..+.
T Consensus 499 AL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 499 ALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999995 56665 22 34599999999999999864 58999888653
No 64
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.3e-37 Score=340.22 Aligned_cols=304 Identities=16% Similarity=0.258 Sum_probs=229.1
Q ss_pred HHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH-HHhcCCCC
Q 009512 161 VQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLGKGLPF 239 (533)
Q Consensus 161 ~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~-~~~~~~~~ 239 (533)
+-.+.+..+.+++++++.|+||||||++|.++++.... .+++++|++|||++|.|+.+.+. .+....+.
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~----------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~ 78 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG----------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGE 78 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC----------cCCeEEEECChHHHHHHHHHHHHHHhCcccCc
Confidence 34456677778899999999999999999988886421 23479999999999999988775 45555667
Q ss_pred eEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccch-hhhcchH-HHHHHHHHhC-CCCc
Q 009512 240 KTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC-MLQRGFR-DQVMQIFRAI-SLPQ 316 (533)
Q Consensus 240 ~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~-~~~~~~~-~~i~~i~~~~-~~~q 316 (533)
.+...+++..... ...+|+|+|||+|++++... ..++++++||+||+|. .++.++. ..+..+++.+ ++.|
T Consensus 79 ~VGy~vr~~~~~~------~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lq 151 (812)
T PRK11664 79 TVGYRMRAESKVG------PNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLK 151 (812)
T ss_pred eEEEEecCccccC------CCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccce
Confidence 7777777764322 34689999999999988864 4799999999999996 4443322 2234455544 5789
Q ss_pred EEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHH-----HHHHHHHhccCCCCCEEEEEcCc
Q 009512 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQ-----KLFDILMSKQHFTPPAVVYVGSR 391 (533)
Q Consensus 317 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~-----~l~~~l~~~~~~~~~~lIF~~s~ 391 (533)
+++||||++.+ .+ ..++.+...+....... .+.+.+.......+.. .+..++. ...+.+|||++++
T Consensus 152 lilmSATl~~~--~l-~~~~~~~~~I~~~gr~~---pV~~~y~~~~~~~~~~~~v~~~l~~~l~---~~~g~iLVFlpg~ 222 (812)
T PRK11664 152 LLIMSATLDND--RL-QQLLPDAPVIVSEGRSF---PVERRYQPLPAHQRFDEAVARATAELLR---QESGSLLLFLPGV 222 (812)
T ss_pred EEEEecCCCHH--HH-HHhcCCCCEEEecCccc---cceEEeccCchhhhHHHHHHHHHHHHHH---hCCCCEEEEcCCH
Confidence 99999999864 23 34444433344333222 2444444343333332 2223332 2357899999999
Q ss_pred ccHHHHHHHHHhh--cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCC--------
Q 009512 392 LGADLLSNAISVT--TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN-------- 461 (533)
Q Consensus 392 ~~~~~l~~~l~~~--~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~-------- 461 (533)
.+++.+++.|... .++.+..+||++++.+|..++..|++|+.+|||||+++++|||||++++||+++.+.
T Consensus 223 ~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~ 302 (812)
T PRK11664 223 GEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKT 302 (812)
T ss_pred HHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccC
Confidence 9999999999842 478899999999999999999999999999999999999999999999999987654
Q ss_pred ----------CHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009512 462 ----------SIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 462 ----------s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
|-..|.||.|||||. .+|.||.|+++.+.
T Consensus 303 g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~ 341 (812)
T PRK11664 303 GLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQA 341 (812)
T ss_pred CcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHH
Confidence 346899999999999 69999999987643
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.8e-37 Score=330.74 Aligned_cols=319 Identities=19% Similarity=0.249 Sum_probs=244.8
Q ss_pred cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 153 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 153 ~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|. .|+++|..+++.+..|+ ++.+.||+|||++|++|++...+. ++.++|++||++||.|.++++..
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~----------G~~v~VvTpt~~LA~qd~e~~~~ 141 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE----------GKGVHLITVNDYLAKRDAEEMGQ 141 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc----------CCCeEEEeCCHHHHHHHHHHHHH
Confidence 365 89999999999998887 999999999999999999866653 66799999999999999999999
Q ss_pred HhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcCC------CCCCCeeEEEEeccchhhh-------
Q 009512 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELDDIRMFVLDEVDCMLQ------- 298 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~~i~~vVvDEah~~~~------- 298 (533)
+...+++++.++.||.+...+.. ...+++|+++||++| .+++..+- ..+..+.++|+||||+|+=
T Consensus 142 l~~~lGl~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpl 220 (790)
T PRK09200 142 VYEFLGLTVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPL 220 (790)
T ss_pred HHhhcCCeEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCce
Confidence 99999999999999988443333 335699999999999 56555431 3467899999999999751
Q ss_pred ---------cchHHHHHHHHHhCC---------CC---------------------------------------------
Q 009512 299 ---------RGFRDQVMQIFRAIS---------LP--------------------------------------------- 315 (533)
Q Consensus 299 ---------~~~~~~i~~i~~~~~---------~~--------------------------------------------- 315 (533)
..+......+...+. ..
T Consensus 221 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~ 300 (790)
T PRK09200 221 IISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFK 300 (790)
T ss_pred eeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhh
Confidence 011122222222220 00
Q ss_pred ----------------------------------------------------------------cEEEecccCcHHHHHH
Q 009512 316 ----------------------------------------------------------------QILMYSATISQEVEKM 331 (533)
Q Consensus 316 ----------------------------------------------------------------q~i~~SAT~~~~~~~~ 331 (533)
++.+||+|...+-.++
T Consensus 301 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~ 380 (790)
T PRK09200 301 RDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF 380 (790)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH
Confidence 3344555554434444
Q ss_pred HHhhcCCeEEEEeCCCCCCCccc-eEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEE
Q 009512 332 SSSISKDIVVVSVGKPNMPNKAV-KQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKAL 410 (533)
Q Consensus 332 ~~~~~~~~~~i~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~ 410 (533)
...+..+.+.+.. +.+.... .....+.....|...++..+......+.|+||||+|+..++.++..|. ..|+++.
T Consensus 381 ~~~Y~l~v~~IPt---~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~-~~gi~~~ 456 (790)
T PRK09200 381 FEVYNMEVVQIPT---NRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLD-EAGIPHN 456 (790)
T ss_pred HHHhCCcEEECCC---CCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH-HCCCCEE
Confidence 4444444443322 1121111 122344566778888888887654557899999999999999999998 7899999
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCC---CCcc-----EEEEcCCCCCHhHHHHhhcccCCCCCccEE
Q 009512 411 SIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVEL---LGVR-----QVIIFDMPNSIKEYVHQIGRASQMGDEGTA 482 (533)
Q Consensus 411 ~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi---~~v~-----~VI~~~~p~s~~~y~qriGR~gR~g~~g~~ 482 (533)
.+||++.+.++..+...+..| .|+|||++++||+|| +++. +||++++|.|...|+||+||+||.|.+|.+
T Consensus 457 ~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 457 LLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred EecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 999999998888888777766 799999999999999 6898 999999999999999999999999999999
Q ss_pred EEEecCcCH
Q 009512 483 IVFVNEENK 491 (533)
Q Consensus 483 ~~l~~~~~~ 491 (533)
++|++.+|.
T Consensus 535 ~~~is~eD~ 543 (790)
T PRK09200 535 QFFISLEDD 543 (790)
T ss_pred EEEEcchHH
Confidence 999998654
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=3.1e-37 Score=314.56 Aligned_cols=299 Identities=17% Similarity=0.170 Sum_probs=207.3
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchH--
Q 009512 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA-- 251 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~-- 251 (533)
++++.||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.++.+... ....+.++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~--------~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~ 69 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS--------QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRI 69 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh--------CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHH
Confidence 57999999999999999999977543 34678999999999999999998887432 233333332210
Q ss_pred ----------HHHHHH------HcCCceeecChHHHHHHHHcCC----CCCC--CeeEEEEeccchhhhcchHHHHHHHH
Q 009512 252 ----------RQVYRI------QQGVELIVGTPGRLIDLLMKHD----IELD--DIRMFVLDEVDCMLQRGFRDQVMQIF 309 (533)
Q Consensus 252 ----------~~~~~l------~~~~~Iiv~Tp~~l~~~l~~~~----~~l~--~i~~vVvDEah~~~~~~~~~~i~~i~ 309 (533)
...... .-..+|+|+||+++...+.... ..+. ..++||+||+|.+.+.++.. +..++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l 148 (358)
T TIGR01587 70 KEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVL 148 (358)
T ss_pred hccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHH
Confidence 000111 1136799999999988776521 1111 23789999999998765443 55555
Q ss_pred HhC--CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEec--chhhHHHHHHHHHhccCCCCCEE
Q 009512 310 RAI--SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE--SNKKKQKLFDILMSKQHFTPPAV 385 (533)
Q Consensus 310 ~~~--~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~--~~~k~~~l~~~l~~~~~~~~~~l 385 (533)
..+ ...|+++||||+|+.+..+................... ....+.+.... ...+...+..++... ..++++|
T Consensus 149 ~~l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~l 226 (358)
T TIGR01587 149 EVLKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEFI-KKGGKIA 226 (358)
T ss_pred HHHHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHHh-hCCCeEE
Confidence 544 46899999999998877776655433211111110000 00111111111 123344444444322 3357899
Q ss_pred EEEcCcccHHHHHHHHHhhcCC--eEEEEcCCCCHHHHHH----HHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCC
Q 009512 386 VYVGSRLGADLLSNAISVTTGM--KALSIHGEKPMKERRE----IMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM 459 (533)
Q Consensus 386 IF~~s~~~~~~l~~~l~~~~~~--~~~~ih~~~~~~~r~~----~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~ 459 (533)
|||+++..|+.+++.|+ ..+. .+..+||++++.+|.. +++.|++|...|||||+++++|+|++ +++||++..
T Consensus 227 Vf~~t~~~~~~~~~~L~-~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~ 304 (358)
T TIGR01587 227 IIVNTVDRAQEFYQQLK-ENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELA 304 (358)
T ss_pred EEECCHHHHHHHHHHHH-hhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCC
Confidence 99999999999999997 3343 5899999999999976 48999999999999999999999995 889999877
Q ss_pred CCCHhHHHHhhcccCCCCCc----cEEEEEecCcC
Q 009512 460 PNSIKEYVHQIGRASQMGDE----GTAIVFVNEEN 490 (533)
Q Consensus 460 p~s~~~y~qriGR~gR~g~~----g~~~~l~~~~~ 490 (533)
| .+.|+||+||+||.|+. |.+++|....+
T Consensus 305 ~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 305 P--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred C--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 6 78999999999998764 36777766443
No 67
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.7e-36 Score=321.64 Aligned_cols=316 Identities=20% Similarity=0.250 Sum_probs=232.1
Q ss_pred CHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCC
Q 009512 159 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP 238 (533)
Q Consensus 159 ~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~ 238 (533)
+|+|.|++..+...+..++.++||+|||++|++|++.+++. ++.++|++|+++||.|+.+++..+.+.++
T Consensus 70 rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~----------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT----------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc----------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 44444455444444447999999999999999998766553 44699999999999999999999999999
Q ss_pred CeEEEEEcCCc---hHHHHHHHHcCCceeecChHHH-HHHHHcC------CCCCCCeeEEEEeccchhhhcc--------
Q 009512 239 FKTALVVGGDA---MARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQRG-------- 300 (533)
Q Consensus 239 ~~~~~~~gg~~---~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~i~~vVvDEah~~~~~~-------- 300 (533)
+++..++++.. ......+...+++|+++||++| .+++..+ ...+..+.++|+||||.|+-..
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliis 219 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVIS 219 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeee
Confidence 99988877632 2223334446799999999999 5655432 3446789999999999985210
Q ss_pred --------hHHHHHHHHHhCCC---------C------------------------------------------------
Q 009512 301 --------FRDQVMQIFRAISL---------P------------------------------------------------ 315 (533)
Q Consensus 301 --------~~~~i~~i~~~~~~---------~------------------------------------------------ 315 (533)
.......+...+.. .
T Consensus 220 g~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~ 299 (762)
T TIGR03714 220 GAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNK 299 (762)
T ss_pred CCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 11111122222200 0
Q ss_pred -------------------------------------------------------------cEEEecccCcHHHHHHHHh
Q 009512 316 -------------------------------------------------------------QILMYSATISQEVEKMSSS 334 (533)
Q Consensus 316 -------------------------------------------------------------q~i~~SAT~~~~~~~~~~~ 334 (533)
++.+||+|...+..++...
T Consensus 300 dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~i 379 (762)
T TIGR03714 300 DYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIET 379 (762)
T ss_pred ceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHH
Confidence 3444555554444444444
Q ss_pred hcCCeEEEEeCCCCCCCccc-eEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEc
Q 009512 335 ISKDIVVVSVGKPNMPNKAV-KQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIH 413 (533)
Q Consensus 335 ~~~~~~~i~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih 413 (533)
+..+.+.+.... +.... .....+.....|...+.+.+......+.|+||||+++..++.++..|. ..|+++..+|
T Consensus 380 Y~l~v~~IPt~k---p~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~-~~gi~~~~L~ 455 (762)
T TIGR03714 380 YSLSVVKIPTNK---PIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLL-REGIPHNLLN 455 (762)
T ss_pred hCCCEEEcCCCC---CeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHH-HCCCCEEEec
Confidence 443433332211 11111 122456667788888888887765667899999999999999999998 7899999999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC---------CccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEE
Q 009512 414 GEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL---------GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV 484 (533)
Q Consensus 414 ~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~---------~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~ 484 (533)
|++.+.++..+...++.| .|+|||++++||+||+ ++.+|+++++|....+ +||+||+||.|.+|.+++
T Consensus 456 a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~ 532 (762)
T TIGR03714 456 AQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQF 532 (762)
T ss_pred CCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEE
Confidence 999998888887776666 7999999999999999 9999999999988766 999999999999999999
Q ss_pred EecCcCH
Q 009512 485 FVNEENK 491 (533)
Q Consensus 485 l~~~~~~ 491 (533)
|++.+|.
T Consensus 533 ~is~eD~ 539 (762)
T TIGR03714 533 FVSLEDD 539 (762)
T ss_pred EEccchh
Confidence 9998654
No 68
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=4.8e-36 Score=316.19 Aligned_cols=318 Identities=21% Similarity=0.243 Sum_probs=245.3
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009512 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 154 g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
|. .|+++|..+...+..|+ ++.++||+|||++|.+|++...+. +..++|++||++||.|.++++..+
T Consensus 54 g~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~----------G~~V~VvTpt~~LA~qdae~~~~l 120 (745)
T TIGR00963 54 GM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT----------GKGVHVVTVNDYLAQRDAEWMGQV 120 (745)
T ss_pred CC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh----------CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 44 78999999999888886 999999999999999999655443 345999999999999999999999
Q ss_pred hcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcC------CCCCCCeeEEEEeccchhhhcc------
Q 009512 234 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQRG------ 300 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~i~~vVvDEah~~~~~~------ 300 (533)
...+++++.++.||.+...+... -.++|+++||++| .++++.+ ...+..+.++|+||+|+|+-..
T Consensus 121 ~~~LGLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLi 198 (745)
T TIGR00963 121 YRFLGLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLI 198 (745)
T ss_pred hccCCCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHh
Confidence 99999999999999886553333 3589999999999 8888765 3467889999999999986210
Q ss_pred ----------hHHHHHHHHHhCC---------CC----------------------------------------------
Q 009512 301 ----------FRDQVMQIFRAIS---------LP---------------------------------------------- 315 (533)
Q Consensus 301 ----------~~~~i~~i~~~~~---------~~---------------------------------------------- 315 (533)
.......+.+.+. ..
T Consensus 199 isg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~ 278 (745)
T TIGR00963 199 ISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEK 278 (745)
T ss_pred hcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhc
Confidence 0000111111110 00
Q ss_pred ---------------------------------------------------------------cEEEecccCcHHHHHHH
Q 009512 316 ---------------------------------------------------------------QILMYSATISQEVEKMS 332 (533)
Q Consensus 316 ---------------------------------------------------------------q~i~~SAT~~~~~~~~~ 332 (533)
++.+||+|...+...+.
T Consensus 279 d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~ 358 (745)
T TIGR00963 279 DVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFE 358 (745)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHH
Confidence 33445555555445555
Q ss_pred HhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEE
Q 009512 333 SSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSI 412 (533)
Q Consensus 333 ~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~i 412 (533)
..+..+.+.+....+..... .....+.....|...+.+.+......+.|+||||++...++.++..|. ..|+++..+
T Consensus 359 ~iY~l~vv~IPtnkp~~R~d--~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~-~~gi~~~~L 435 (745)
T TIGR00963 359 KIYNLEVVVVPTNRPVIRKD--LSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLK-ERGIPHNVL 435 (745)
T ss_pred HHhCCCEEEeCCCCCeeeee--CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH-HcCCCeEEe
Confidence 55554444433222111100 112334455667777877776666678899999999999999999998 789999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC-------ccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEE
Q 009512 413 HGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG-------VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVF 485 (533)
Q Consensus 413 h~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~-------v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l 485 (533)
|++ +.+|+..+..|..+...|+|||++++||+||+. ..+||+++.|.|...|.|++||+||.|.+|.+..|
T Consensus 436 na~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 436 NAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred eCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 998 779999999999999999999999999999998 45999999999999999999999999999999999
Q ss_pred ecCcCH
Q 009512 486 VNEENK 491 (533)
Q Consensus 486 ~~~~~~ 491 (533)
++..|.
T Consensus 514 ls~eD~ 519 (745)
T TIGR00963 514 LSLEDN 519 (745)
T ss_pred EeccHH
Confidence 998764
No 69
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=9.4e-35 Score=324.22 Aligned_cols=323 Identities=21% Similarity=0.263 Sum_probs=238.6
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 155 ~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
..+|+++|.+++..++.+ ++|+++|||+|||+++++++...+. ..+.++|||+||++|+.|+.+.++++.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~---------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 82 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH---------KKGGKVLILAPTKPLVEQHAEFFRKFL 82 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH---------hCCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 347899999999988877 9999999999999999988887663 245789999999999999999999886
Q ss_pred cCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHH-HHHhCC
Q 009512 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQ-IFRAIS 313 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~-i~~~~~ 313 (533)
...+..+..+.|+.... ....+..+.+|+|+||+.+...+....+.+.++++|||||||++........+.. .....+
T Consensus 83 ~~~~~~v~~~~g~~~~~-~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~ 161 (773)
T PRK13766 83 NIPEEKIVVFTGEVSPE-KRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAK 161 (773)
T ss_pred CCCCceEEEEeCCCCHH-HHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCC
Confidence 54445666666665544 3445566789999999999888888888889999999999999875433333333 333335
Q ss_pred CCcEEEecccCcHH---HHHHHHhhcCCeEEEEeCCCC------------------------------------------
Q 009512 314 LPQILMYSATISQE---VEKMSSSISKDIVVVSVGKPN------------------------------------------ 348 (533)
Q Consensus 314 ~~q~i~~SAT~~~~---~~~~~~~~~~~~~~i~~~~~~------------------------------------------ 348 (533)
.+++++||||+... +..+...+....+.+......
T Consensus 162 ~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~ 241 (773)
T PRK13766 162 NPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKE 241 (773)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999998422 222222222111111100000
Q ss_pred --CC--Cc-------------cceEE------------------------------------------------------
Q 009512 349 --MP--NK-------------AVKQL------------------------------------------------------ 357 (533)
Q Consensus 349 --~~--~~-------------~i~~~------------------------------------------------------ 357 (533)
.. .. .+.+.
T Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~ 321 (773)
T PRK13766 242 LGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSK 321 (773)
T ss_pred CCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcH
Confidence 00 00 00000
Q ss_pred ------------------EEEecchhhHHHHHHHHHhcc--CCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCC--
Q 009512 358 ------------------AIWVESNKKKQKLFDILMSKQ--HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGE-- 415 (533)
Q Consensus 358 ------------------~~~~~~~~k~~~l~~~l~~~~--~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~-- 415 (533)
........|...|.+++.... ..+.++||||.++..|+.|++.|. ..++.+..+||.
T Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~-~~~~~~~~~~g~~~ 400 (773)
T PRK13766 322 ASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLE-KEGIKAVRFVGQAS 400 (773)
T ss_pred HHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHH-hCCCceEEEEcccc
Confidence 000011234444555554432 456799999999999999999997 788888889886
Q ss_pred ------CCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCc
Q 009512 416 ------KPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 416 ------~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~ 489 (533)
+++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|++...|+||+||+||.|. |.+++++...
T Consensus 401 ~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~ 479 (773)
T PRK13766 401 KDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKG 479 (773)
T ss_pred ccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999864 8888888754
Q ss_pred C
Q 009512 490 N 490 (533)
Q Consensus 490 ~ 490 (533)
.
T Consensus 480 t 480 (773)
T PRK13766 480 T 480 (773)
T ss_pred C
Confidence 3
No 70
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=1.1e-36 Score=292.08 Aligned_cols=300 Identities=26% Similarity=0.431 Sum_probs=234.0
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhcCC---CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeE
Q 009512 211 PLAMVLTPTRELCIQVEEQAKLLGKGL---PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRM 287 (533)
Q Consensus 211 ~~~Lil~Ptr~L~~Q~~~~~~~~~~~~---~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~ 287 (533)
|.++|+-|.|+|++|.++.+++|...+ .++..++.||.....|...+.++.+|+|+||+++++.+..+.+.+..+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 578999999999999999777775433 36777899999999999999999999999999999999999999999999
Q ss_pred EEEeccchhhhcchHHHHHHHHHhC-------CCCcEEEecccCc-HHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEE
Q 009512 288 FVLDEVDCMLQRGFRDQVMQIFRAI-------SLPQILMYSATIS-QEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAI 359 (533)
Q Consensus 288 vVvDEah~~~~~~~~~~i~~i~~~~-------~~~q~i~~SAT~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~ 359 (533)
+|+||++.++..++...+.++...+ ...|.+..|||+. -++..+..+.+.-|.-+........++.+.+.+.
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 9999999999888888877777666 3468899999974 2344555555555555555444443333333222
Q ss_pred Eecc------------------------------hhhHHHHHHHHHh-------ccCCCCCEEEEEcCcccHHHHHHHHH
Q 009512 360 WVES------------------------------NKKKQKLFDILMS-------KQHFTPPAVVYVGSRLGADLLSNAIS 402 (533)
Q Consensus 360 ~~~~------------------------------~~k~~~l~~~l~~-------~~~~~~~~lIF~~s~~~~~~l~~~l~ 402 (533)
.+.. .+....-..++.. ..+.-.++||||.++..|+.|.+++.
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 2110 0000111111111 12234589999999999999999998
Q ss_pred hhcC--CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCcc
Q 009512 403 VTTG--MKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEG 480 (533)
Q Consensus 403 ~~~~--~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g 480 (533)
++.+ +.++.+||+....+|.+-++.|+.+.++.||||++++||+||..+-++||..+|.....|+|||||+||+-+.|
T Consensus 527 qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermg 606 (725)
T KOG0349|consen 527 QKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMG 606 (725)
T ss_pred HcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcc
Confidence 6655 67999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred EEEEEecC--------------------------------cCHHHHHHHHHHHHhcCCCCCH
Q 009512 481 TAIVFVNE--------------------------------ENKNLFQELVDILKSSGAGIPR 510 (533)
Q Consensus 481 ~~~~l~~~--------------------------------~~~~~~~~l~~~l~~~~~~~p~ 510 (533)
.|+.++.. ++...+.++.+.|.-..+.+.+
T Consensus 607 laislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~ 668 (725)
T KOG0349|consen 607 LAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDK 668 (725)
T ss_pred eeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCC
Confidence 88888631 2345677777777776666543
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=323.97 Aligned_cols=334 Identities=23% Similarity=0.320 Sum_probs=258.7
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHH
Q 009512 142 LSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
....+..++.+.|...|++||.+|+..+.+|+|++|+.+||||||.+|++|++.+++. ....++|||.||++
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~--------~~~a~AL~lYPtnA 126 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLR--------DPSARALLLYPTNA 126 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhh--------CcCccEEEEechhh
Confidence 3445678888999999999999999999999999999999999999999999999987 33447999999999
Q ss_pred HHHHHHHHHHHHhcCCC--CeEEEEEcCCchHHHH-HHHHcCCceeecChHHHHHHHHcCC----CCCCCeeEEEEeccc
Q 009512 222 LCIQVEEQAKLLGKGLP--FKTALVVGGDAMARQV-YRIQQGVELIVGTPGRLIDLLMKHD----IELDDIRMFVLDEVD 294 (533)
Q Consensus 222 L~~Q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~-~~l~~~~~Iiv~Tp~~l~~~l~~~~----~~l~~i~~vVvDEah 294 (533)
||+.+.+.++++...++ ++... +.|+...... .-..+.++|+++||.+|..++.+.. ..+.++++||+||+|
T Consensus 127 La~DQ~~rl~~~~~~~~~~v~~~~-y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElH 205 (851)
T COG1205 127 LANDQAERLRELISDLPGKVTFGR-YTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELH 205 (851)
T ss_pred hHhhHHHHHHHHHHhCCCcceeee-ecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecce
Confidence 99999999999998877 44444 4444444443 4456779999999999988565532 336779999999999
Q ss_pred hhhhcchHHHHHHHHHhC--------CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEec----
Q 009512 295 CMLQRGFRDQVMQIFRAI--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVE---- 362 (533)
Q Consensus 295 ~~~~~~~~~~i~~i~~~~--------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~---- 362 (533)
..- ..|+..+..+++++ ..+|+|+.|||+.+.-+ .+..+........+.....+... ...+.+.+
T Consensus 206 tYr-Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e-~~~~l~~~~f~~~v~~~g~~~~~-~~~~~~~p~~~~ 282 (851)
T COG1205 206 TYR-GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGE-FAEELFGRDFEVPVDEDGSPRGL-RYFVRREPPIRE 282 (851)
T ss_pred ecc-ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHH-HHHHhcCCcceeeccCCCCCCCc-eEEEEeCCcchh
Confidence 653 34777777777666 47899999999977544 44444444444434443333332 33333333
Q ss_pred -----chhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHH----HHHHhhcC----CeEEEEcCCCCHHHHHHHHHHHh
Q 009512 363 -----SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLS----NAISVTTG----MKALSIHGEKPMKERREIMRSFL 429 (533)
Q Consensus 363 -----~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~----~~l~~~~~----~~~~~ih~~~~~~~r~~~~~~f~ 429 (533)
..++...+..++......+-++|+|+.++..++.++ ..+. ..+ ..+..+++++..++|..+...|+
T Consensus 283 ~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~-~~~~~l~~~v~~~~~~~~~~er~~ie~~~~ 361 (851)
T COG1205 283 LAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLV-REGGKLLDAVSTYRAGLHREERRRIEAEFK 361 (851)
T ss_pred hhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHh-hcchhhhhheeeccccCCHHHHHHHHHHHh
Confidence 123333344444444445668999999999999997 3333 334 56889999999999999999999
Q ss_pred cCCCcEEEEeccccccCCCCCccEEEEcCCCC-CHhHHHHhhcccCCCCCccEEEEEecC
Q 009512 430 VGEVPVIVATGILGRGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDEGTAIVFVNE 488 (533)
Q Consensus 430 ~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~-s~~~y~qriGR~gR~g~~g~~~~l~~~ 488 (533)
.|++.++++|..+.-|+||.+++.||.+..|. +..++.||.||+||.++.+..+++...
T Consensus 362 ~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 362 EGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred cCCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 99999999999999999999999999999999 999999999999999977776666653
No 72
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=9.4e-36 Score=312.76 Aligned_cols=338 Identities=18% Similarity=0.249 Sum_probs=248.5
Q ss_pred cCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009512 153 AGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 153 ~g~~~p~~~Q~~~i~~i~-~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
.+|..++.+|+.++|.++ ++.|+|||||||||||..|+|.+++.+.......--...+-+++|++|+++||..+.+.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 478899999999999998 7889999999999999999999999887522111122356789999999999999777665
Q ss_pred HHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCC---CCCCCeeEEEEeccchhhhcchHHHHHHH
Q 009512 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD---IELDDIRMFVLDEVDCMLQRGFRDQVMQI 308 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~---~~l~~i~~vVvDEah~~~~~~~~~~i~~i 308 (533)
+-...+|+.+..+.|....... + -..++|||+||++|.-.-++.. .-+..+++||+||+|.+-+ ..++.++.|
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~t--e-i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKT--E-IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHH--H-HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHH
Confidence 5556678999999998765552 2 2448999999999954444322 2357799999999997665 467888888
Q ss_pred HHhC--------CCCcEEEecccCcHHHHHHHHhhcCC----eEEEEeCCCCCCCccceEEEEEecch---hhH----HH
Q 009512 309 FRAI--------SLPQILMYSATISQEVEKMSSSISKD----IVVVSVGKPNMPNKAVKQLAIWVESN---KKK----QK 369 (533)
Q Consensus 309 ~~~~--------~~~q~i~~SAT~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~i~~~~~~~~~~---~k~----~~ 369 (533)
+.++ ...++|++|||+|+ +++++..+..+ ...++...+..+ ..+.+.-.... ... ..
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN-~eDvA~fL~vn~~~glfsFd~~yRPvp---L~~~~iG~k~~~~~~~~~~~d~~ 337 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPN-YEDVARFLRVNPYAGLFSFDQRYRPVP---LTQGFIGIKGKKNRQQKKNIDEV 337 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCC-HHHHHHHhcCCCccceeeecccccccc---eeeeEEeeecccchhhhhhHHHH
Confidence 8776 46799999999997 56666655544 233333333222 33343332222 111 11
Q ss_pred HHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhc----------------------CCeEEEEcCCCCHHHHHHHHHH
Q 009512 370 LFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT----------------------GMKALSIHGEKPMKERREIMRS 427 (533)
Q Consensus 370 l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~----------------------~~~~~~ih~~~~~~~r~~~~~~ 427 (533)
..+.+.+....+.+++|||.++..+...|+.|.+.. ......+|+||..++|..+.+.
T Consensus 338 ~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 338 CYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 222233333457799999999999999988885211 1234579999999999999999
Q ss_pred HhcCCCcEEEEeccccccCCCCCccEEEE-----cCCC------CCHhHHHHhhcccCCCC--CccEEEEEecCcCHHHH
Q 009512 428 FLVGEVPVIVATGILGRGVELLGVRQVII-----FDMP------NSIKEYVHQIGRASQMG--DEGTAIVFVNEENKNLF 494 (533)
Q Consensus 428 f~~g~~~VLvaT~~~~~Gldi~~v~~VI~-----~~~p------~s~~~y~qriGR~gR~g--~~g~~~~l~~~~~~~~~ 494 (533)
|..|.++||+||..+++|+|+|+- +||+ ||.- .++.+.+|.+|||||-+ ..|.++++.+.+....+
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~-aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y 496 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAY-AVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHY 496 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcce-EEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHH
Confidence 999999999999999999999965 5555 3322 36788999999999964 56999999888777776
Q ss_pred HHHHH
Q 009512 495 QELVD 499 (533)
Q Consensus 495 ~~l~~ 499 (533)
..++.
T Consensus 497 ~sLl~ 501 (1230)
T KOG0952|consen 497 ESLLT 501 (1230)
T ss_pred HHHHc
Confidence 66654
No 73
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=4.8e-35 Score=318.02 Aligned_cols=329 Identities=21% Similarity=0.302 Sum_probs=252.5
Q ss_pred HHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHH
Q 009512 149 NIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE 228 (533)
Q Consensus 149 ~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~ 228 (533)
.....|+..++|-|.++|..++.|++++|.+|||+||+++|.+|++- .++..|||.|..+|.+.+
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l-------------~~gitvVISPL~SLm~DQ-- 320 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL-------------LGGVTVVISPLISLMQDQ-- 320 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc-------------cCCceEEeccHHHHHHHH--
Confidence 33456999999999999999999999999999999999999999873 245799999999997654
Q ss_pred HHHHHhcCCCCeEEEEEcCCchHHHHH---HHHc---CCceeecChHHHHHHHH--cCCCCCCC---eeEEEEeccchhh
Q 009512 229 QAKLLGKGLPFKTALVVGGDAMARQVY---RIQQ---GVELIVGTPGRLIDLLM--KHDIELDD---IRMFVLDEVDCML 297 (533)
Q Consensus 229 ~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~---~~~Iiv~Tp~~l~~~l~--~~~~~l~~---i~~vVvDEah~~~ 297 (533)
...+ ...++....+.++.....+.. .+.. .++|+..||+++...-. .....+.. +.++|+||||+..
T Consensus 321 -v~~L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS 398 (941)
T KOG0351|consen 321 -VTHL-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS 398 (941)
T ss_pred -HHhh-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh
Confidence 4444 223678888888877764433 3333 37899999999844221 11223344 8999999999999
Q ss_pred hcc--hHHHHHHHH---HhCCCCcEEEecccCcHHHHHHHHhh--cCCeEEEEeCCCCCCCccceEEEEEecchhhHHHH
Q 009512 298 QRG--FRDQVMQIF---RAISLPQILMYSATISQEVEKMSSSI--SKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKL 370 (533)
Q Consensus 298 ~~~--~~~~i~~i~---~~~~~~q~i~~SAT~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l 370 (533)
+|| |++.|..+. .+++...++++|||....++.-+-.. +.++..+.. ..+ .++....+..-........+
T Consensus 399 qWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~-sfn--R~NL~yeV~~k~~~~~~~~~ 475 (941)
T KOG0351|consen 399 QWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS-SFN--RPNLKYEVSPKTDKDALLDI 475 (941)
T ss_pred hhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc-cCC--CCCceEEEEeccCccchHHH
Confidence 998 888877654 44477899999999977665443332 233432221 111 22233222222212222223
Q ss_pred HHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 009512 371 FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 450 (533)
Q Consensus 371 ~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~ 450 (533)
...+. ......++||||.++.+|+.++..|+ ..++.+..||+||+..+|..+.+.|..++++|+|||=.+++|||.|+
T Consensus 476 ~~~~~-~~~~~~s~IIYC~sr~~ce~vs~~L~-~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~D 553 (941)
T KOG0351|consen 476 LEESK-LRHPDQSGIIYCLSRKECEQVSAVLR-SLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPD 553 (941)
T ss_pred HHHhh-hcCCCCCeEEEeCCcchHHHHHHHHH-HhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCc
Confidence 33332 33456789999999999999999999 88999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHH
Q 009512 451 VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 451 v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~ 499 (533)
|+.||||++|.|++.|.|-+|||||.|....|++|++..|...++.++.
T Consensus 554 VR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 554 VRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred eeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987766666554
No 74
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=301.25 Aligned_cols=321 Identities=21% Similarity=0.234 Sum_probs=228.7
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 155 ~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.-.++.+|.+....++ |+|+||++|||+|||.+++..+++|+.. ..+.++|+++||+-|+.|....+..++
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw--------~p~~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEW--------RPKGKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhc--------CCcceEEEeeCCchHHHHHHHHHhhcc
Confidence 3478999999999999 9999999999999999999999999875 344789999999999999877777776
Q ss_pred cCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCC-CCCeeEEEEeccchhhhcchHHHHH-HHHHhC
Q 009512 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIE-LDDIRMFVLDEVDCMLQRGFRDQVM-QIFRAI 312 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~-l~~i~~vVvDEah~~~~~~~~~~i~-~i~~~~ 312 (533)
.. ..+....||.........+....+|+|+||+.+.+-+...... +++|.++||||||+-.....+..+. ..+..-
T Consensus 131 ~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k 208 (746)
T KOG0354|consen 131 IP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLK 208 (746)
T ss_pred Cc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhh
Confidence 54 5556666664444433455667899999999999988875433 6899999999999977655444444 444433
Q ss_pred -CCCcEEEecccCcHHHHHHHHhhcCCeEEEEe-----------------------------------------------
Q 009512 313 -SLPQILMYSATISQEVEKMSSSISKDIVVVSV----------------------------------------------- 344 (533)
Q Consensus 313 -~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~----------------------------------------------- 344 (533)
...|+|++|||+....+........=-+.+.+
T Consensus 209 ~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~ 288 (746)
T KOG0354|consen 209 NQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQE 288 (746)
T ss_pred hccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHh
Confidence 34499999999753322222111000000000
Q ss_pred --------CC----C------CCCCccce--EE-----------------------------------------------
Q 009512 345 --------GK----P------NMPNKAVK--QL----------------------------------------------- 357 (533)
Q Consensus 345 --------~~----~------~~~~~~i~--~~----------------------------------------------- 357 (533)
.. . ....++.. +.
T Consensus 289 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~ 368 (746)
T KOG0354|consen 289 EGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLEL 368 (746)
T ss_pred cCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHh
Confidence 00 0 00000000 00
Q ss_pred -----------------EEEe--cchhhHHHHHHHHHhc--cCCCCCEEEEEcCcccHHHHHHHHHh--hcCCeEEEEc-
Q 009512 358 -----------------AIWV--ESNKKKQKLFDILMSK--QHFTPPAVVYVGSRLGADLLSNAISV--TTGMKALSIH- 413 (533)
Q Consensus 358 -----------------~~~~--~~~~k~~~l~~~l~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~--~~~~~~~~ih- 413 (533)
.... ....|...+.+++.+. .....++||||.++..|+.|..+|.+ ..+++...+-
T Consensus 369 e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiG 448 (746)
T KOG0354|consen 369 EARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIG 448 (746)
T ss_pred cchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeee
Confidence 0000 0122334444444432 23456999999999999999999972 2223333222
Q ss_pred -------CCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEe
Q 009512 414 -------GEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFV 486 (533)
Q Consensus 414 -------~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~ 486 (533)
.+|++.++.++++.|++|+++|||||+++++||||+.++.||-||.-.++...+||.|| ||+ +.|.+++++
T Consensus 449 q~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~ 526 (746)
T KOG0354|consen 449 QGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLT 526 (746)
T ss_pred ccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEE
Confidence 48999999999999999999999999999999999999999999999999999999999 998 678888888
Q ss_pred cC
Q 009512 487 NE 488 (533)
Q Consensus 487 ~~ 488 (533)
+.
T Consensus 527 t~ 528 (746)
T KOG0354|consen 527 TG 528 (746)
T ss_pred cc
Confidence 73
No 75
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=9e-34 Score=286.44 Aligned_cols=290 Identities=18% Similarity=0.188 Sum_probs=198.1
Q ss_pred HHHHHHHHHhCCCc--EEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCC-
Q 009512 161 VQMQAIPSALSGKS--LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL- 237 (533)
Q Consensus 161 ~Q~~~i~~i~~g~~--vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~- 237 (533)
+|.++++.+..+.+ ++++||||||||.+|++|++.. +.+++|++|+++|++|+++.++.+...+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~ 67 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-------------ENDTIALYPTNALIEDQTEAIKEFVDVFK 67 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-------------CCCEEEEeChHHHHHHHHHHHHHHHHhcC
Confidence 59999999998874 7889999999999999998741 2358999999999999999888876432
Q ss_pred ---CCeEEEEEcCCchHH--HHH------------------H-HHcCCceeecChHHHHHHHHcC---C--C---CCCCe
Q 009512 238 ---PFKTALVVGGDAMAR--QVY------------------R-IQQGVELIVGTPGRLIDLLMKH---D--I---ELDDI 285 (533)
Q Consensus 238 ---~~~~~~~~gg~~~~~--~~~------------------~-l~~~~~Iiv~Tp~~l~~~l~~~---~--~---~l~~i 285 (533)
+..+..+.| ....+ ... . ....+.|+++||+.|..++... . . .+..+
T Consensus 68 ~~~~~~v~~~~g-~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 68 PERDVNLLHVSK-ATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCCCceEEEecC-CchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 334444444 32221 000 0 1235788999999997766531 1 1 14789
Q ss_pred eEEEEeccchhhhcc-----hHHHHHHHHHhC-CCCcEEEecccCcHHHHHHHHhh--cCCeEEEEeCCCCC--------
Q 009512 286 RMFVLDEVDCMLQRG-----FRDQVMQIFRAI-SLPQILMYSATISQEVEKMSSSI--SKDIVVVSVGKPNM-------- 349 (533)
Q Consensus 286 ~~vVvDEah~~~~~~-----~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~--~~~~~~i~~~~~~~-------- 349 (533)
++||+||+|.+...+ +.-....++... ...+++++|||++..+....... ...++....+....
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~ 226 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELE 226 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhh
Confidence 999999999876433 112233333322 35799999999998877766654 34444333333100
Q ss_pred ---C-------CccceEEEEEecchhhHH---HHHHHHHhc--cCCCCCEEEEEcCcccHHHHHHHHHhh-cCCeEEEEc
Q 009512 350 ---P-------NKAVKQLAIWVESNKKKQ---KLFDILMSK--QHFTPPAVVYVGSRLGADLLSNAISVT-TGMKALSIH 413 (533)
Q Consensus 350 ---~-------~~~i~~~~~~~~~~~k~~---~l~~~l~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~~-~~~~~~~ih 413 (533)
. .+.+.+.+.. ....+.. .+.+.+... ...+.++||||+++..++.++..|+.. .++.+..+|
T Consensus 227 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~ 305 (357)
T TIGR03158 227 ADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRIT 305 (357)
T ss_pred ccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeee
Confidence 0 0133333332 2222222 223333221 124568999999999999999999832 246788999
Q ss_pred CCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccC
Q 009512 414 GEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRAS 474 (533)
Q Consensus 414 ~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~g 474 (533)
|.+++.+|.++ ++.+|||||+++++|||++.+ +|| ++ |.+.+.|+||+||+|
T Consensus 306 g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 306 GFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred cCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 99999988654 478999999999999999986 666 45 889999999999997
No 76
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=4.9e-35 Score=280.40 Aligned_cols=333 Identities=22% Similarity=0.290 Sum_probs=244.4
Q ss_pred HHHHHHHHc-CCCCC-CHHHHHHHHHHhC-CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHH
Q 009512 145 KLLQNIEAA-GYDMP-TPVQMQAIPSALS-GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE 221 (533)
Q Consensus 145 ~l~~~l~~~-g~~~p-~~~Q~~~i~~i~~-g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~ 221 (533)
.+.+.|++. |+..+ ++.|.+++..+.. .+|+.|++|||+||+++|.||++.+ +...||+.|..+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------------~gITIV~SPLiA 72 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------------GGITIVISPLIA 72 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------------CCeEEEehHHHH
Confidence 345566665 77765 8999999999874 5699999999999999999999853 347999999999
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEEEcCCchHH---HHHHH---HcCCceeecChHHHHHHHHc----CCCCCCCeeEEEEe
Q 009512 222 LCIQVEEQAKLLGKGLPFKTALVVGGDAMAR---QVYRI---QQGVELIVGTPGRLIDLLMK----HDIELDDIRMFVLD 291 (533)
Q Consensus 222 L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l---~~~~~Iiv~Tp~~l~~~l~~----~~~~l~~i~~vVvD 291 (533)
|+....+.+.++ .+.+..+.+..+..+ .+.++ +....++..||+....-... .-.+-.-+.++|+|
T Consensus 73 LIkDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVD 148 (641)
T KOG0352|consen 73 LIKDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVD 148 (641)
T ss_pred HHHHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEec
Confidence 988777766665 233333333322222 12222 33577999999875322111 11122347899999
Q ss_pred ccchhhhcc--hHHHHHHH---HHhCCCCcEEEecccCcHHHHHHHHh--hcCCeEEEEeCCC---CCCCccceEEEEEe
Q 009512 292 EVDCMLQRG--FRDQVMQI---FRAISLPQILMYSATISQEVEKMSSS--ISKDIVVVSVGKP---NMPNKAVKQLAIWV 361 (533)
Q Consensus 292 Eah~~~~~~--~~~~i~~i---~~~~~~~q~i~~SAT~~~~~~~~~~~--~~~~~~~i~~~~~---~~~~~~i~~~~~~~ 361 (533)
|||+..+|| |++.+..+ .+..+....+++|||-.+++++-+.. .+.+|+-+..... +.......... +
T Consensus 149 EAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~--I 226 (641)
T KOG0352|consen 149 EAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSF--I 226 (641)
T ss_pred hhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHH--h
Confidence 999999998 88887765 45558889999999998887654432 3445543321111 11111100000 0
Q ss_pred cchhhHHHHHHHHHh-----------ccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhc
Q 009512 362 ESNKKKQKLFDILMS-----------KQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLV 430 (533)
Q Consensus 362 ~~~~k~~~l~~~l~~-----------~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~ 430 (533)
.+-...|.++... .....+..||||.++++|+.++-.|. ..|+++..||+|+...||.++.+.|.+
T Consensus 227 --~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~-~~Gi~A~AYHAGLK~~ERTeVQe~WM~ 303 (641)
T KOG0352|consen 227 --TDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLE-IAGIPAMAYHAGLKKKERTEVQEKWMN 303 (641)
T ss_pred --hhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhh-hcCcchHHHhcccccchhHHHHHHHhc
Confidence 0111222222221 12234578999999999999999998 899999999999999999999999999
Q ss_pred CCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHH
Q 009512 431 GEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 431 g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~ 499 (533)
++++|++||..+++|+|-|+|++||++++|.++.-|.|-.|||||.|...+|-++++.+|.+.+..|+.
T Consensus 304 ~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 304 NEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred CCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999887766553
No 77
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-33 Score=299.87 Aligned_cols=320 Identities=14% Similarity=0.151 Sum_probs=219.8
Q ss_pred CCCCHHHHHHHHHHh-CC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 156 DMPTPVQMQAIPSAL-SG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~-~g--~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
..++|+|.+++..++ .| ++.++++|||+|||++.+..+ ..+ +.++|||||+.+|+.||.+++.+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa-~~l------------~k~tLILvps~~Lv~QW~~ef~~ 320 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAA-CTV------------KKSCLVLCTSAVSVEQWKQQFKM 320 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHH-HHh------------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 468999999999988 34 478999999999999876443 222 24599999999999999999999
Q ss_pred HhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcC--------CCCCCCeeEEEEeccchhhhcchHHH
Q 009512 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH--------DIELDDIRMFVLDEVDCMLQRGFRDQ 304 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~--------~~~l~~i~~vVvDEah~~~~~~~~~~ 304 (533)
+....+..+..+.|+.. .. ......|+|+|++.+.....+. .+.-..+++||+||||++.. ..
T Consensus 321 ~~~l~~~~I~~~tg~~k-~~----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~ 391 (732)
T TIGR00603 321 WSTIDDSQICRFTSDAK-ER----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AM 391 (732)
T ss_pred hcCCCCceEEEEecCcc-cc----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HH
Confidence 86443344444444422 11 1223689999999875432211 12234688999999999853 45
Q ss_pred HHHHHHhCCCCcEEEecccCcHHHHHH--HHhhcCCeEEEEeCCC------CCCCccce---------------------
Q 009512 305 VMQIFRAISLPQILMYSATISQEVEKM--SSSISKDIVVVSVGKP------NMPNKAVK--------------------- 355 (533)
Q Consensus 305 i~~i~~~~~~~q~i~~SAT~~~~~~~~--~~~~~~~~~~i~~~~~------~~~~~~i~--------------------- 355 (533)
+..++..+.....++||||+.+.-... ...+... ..+..... ........
T Consensus 392 fr~il~~l~a~~RLGLTATP~ReD~~~~~L~~LiGP-~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~ 470 (732)
T TIGR00603 392 FRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGP-KLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRK 470 (732)
T ss_pred HHHHHHhcCcCcEEEEeecCcccCCchhhhhhhcCC-eeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchh
Confidence 566777777788999999996432211 1111111 11111100 00000000
Q ss_pred EEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCc
Q 009512 356 QLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVP 434 (533)
Q Consensus 356 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~ 434 (533)
....+.....|...+..++..+...+.++||||.+...++.++..|. +..+||++++.+|..+++.|+.| .++
T Consensus 471 k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~------~~~I~G~ts~~ER~~il~~Fr~~~~i~ 544 (732)
T TIGR00603 471 RMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG------KPFIYGPTSQQERMQILQNFQHNPKVN 544 (732)
T ss_pred hhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC------CceEECCCCHHHHHHHHHHHHhCCCcc
Confidence 00111222334444444554444466799999999998888887763 35689999999999999999975 889
Q ss_pred EEEEeccccccCCCCCccEEEEcCCC-CCHhHHHHhhcccCCCCCccEE-------EEEecCcCH--HHHHHHHHHHHhc
Q 009512 435 VIVATGILGRGVELLGVRQVIIFDMP-NSIKEYVHQIGRASQMGDEGTA-------IVFVNEENK--NLFQELVDILKSS 504 (533)
Q Consensus 435 VLvaT~~~~~Gldi~~v~~VI~~~~p-~s~~~y~qriGR~gR~g~~g~~-------~~l~~~~~~--~~~~~l~~~l~~~ 504 (533)
+||+|+++.+|||+|++++||+++.| .|..+|+||+||++|.+..|.+ +.|++.+.. .+..+-..+|-..
T Consensus 545 vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~~q 624 (732)
T TIGR00603 545 TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLVDQ 624 (732)
T ss_pred EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHHHC
Confidence 99999999999999999999999988 4999999999999999876654 778877644 3444445555543
No 78
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=6.1e-33 Score=308.32 Aligned_cols=303 Identities=17% Similarity=0.249 Sum_probs=215.1
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEccc----HHHHHHHHHHHHH-Hh
Q 009512 160 PVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT----RELCIQVEEQAKL-LG 234 (533)
Q Consensus 160 ~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt----r~L~~Q~~~~~~~-~~ 234 (533)
.+..+.+..+..++.++|+|+||||||+ .+|.+..-.. .+....+++..|. ++||.++.+++.. ++
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g-------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG 147 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELG-------RGVKGLIGHTQPRRLAARTVANRIAEELETELG 147 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcC-------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhc
Confidence 3445666777778888999999999999 6785543221 1222345555675 5777777766653 33
Q ss_pred cCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccc-hhhhcchHH-HHHHHHHhC
Q 009512 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD-CMLQRGFRD-QVMQIFRAI 312 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah-~~~~~~~~~-~i~~i~~~~ 312 (533)
...|+.+ ... . ....+++|+|+|||+|++.+..... +.++++||||||| ++++.+|.. .+..++...
T Consensus 148 ~~VGY~v----rf~---~---~~s~~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r 216 (1294)
T PRK11131 148 GCVGYKV----RFN---D---QVSDNTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNIDFILGYLKELLPRR 216 (1294)
T ss_pred ceeceee----cCc---c---ccCCCCCEEEEChHHHHHHHhcCCc-cccCcEEEecCccccccccchHHHHHHHhhhcC
Confidence 3333221 111 1 1235689999999999999987654 9999999999999 688888764 345555555
Q ss_pred CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecc------hhhHHHHHHHHHhc-cCCCCCEE
Q 009512 313 SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES------NKKKQKLFDILMSK-QHFTPPAV 385 (533)
Q Consensus 313 ~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~~l~~~-~~~~~~~l 385 (533)
++.|+|+||||++. +.+.+.+...++ +.+.....+ +...+..... ......++..+... ....+.+|
T Consensus 217 pdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr~~p---Vei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdIL 290 (1294)
T PRK11131 217 PDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGRTYP---VEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDIL 290 (1294)
T ss_pred CCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCcccc---ceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEE
Confidence 67899999999975 466666665554 344333322 3333333321 12233333333221 23456899
Q ss_pred EEEcCcccHHHHHHHHHhhcCC---eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcC----
Q 009512 386 VYVGSRLGADLLSNAISVTTGM---KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD---- 458 (533)
Q Consensus 386 IF~~s~~~~~~l~~~l~~~~~~---~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~---- 458 (533)
||++++.+++.+++.|. ..++ .+..+||++++.+|..+++. .|..+|||||+++++|||||++++||+++
T Consensus 291 VFLpg~~EIe~lae~L~-~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~ 367 (1294)
T PRK11131 291 IFMSGEREIRDTADALN-KLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARI 367 (1294)
T ss_pred EEcCCHHHHHHHHHHHH-hcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccc
Confidence 99999999999999998 4444 46789999999999999886 47899999999999999999999999986
Q ss_pred -----------C---CCCHhHHHHhhcccCCCCCccEEEEEecCcCHH
Q 009512 459 -----------M---PNSIKEYVHQIGRASQMGDEGTAIVFVNEENKN 492 (533)
Q Consensus 459 -----------~---p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~ 492 (533)
+ |.|...|.||.|||||. .+|.|+.|+++.+..
T Consensus 368 ~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 368 SRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred cccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 2 34668999999999999 799999999976543
No 79
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=9.8e-32 Score=291.36 Aligned_cols=312 Identities=16% Similarity=0.220 Sum_probs=224.0
Q ss_pred CCCHHHHHHHHHHhCC---CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009512 157 MPTPVQMQAIPSALSG---KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g---~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.+++.|.++++.+..+ +++++.|+||||||.+|+.++...+. .+.++||++|+++|+.|+.+.+++.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~----------~g~~vLvLvPt~~L~~Q~~~~l~~~ 213 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA----------QGKQALVLVPEIALTPQMLARFRAR 213 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH----------cCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 6899999999999874 78999999999999999887665543 2567999999999999999988775
Q ss_pred hcCCCCeEEEEEcCCchHHHHH---HHH-cCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcch------HH
Q 009512 234 GKGLPFKTALVVGGDAMARQVY---RIQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF------RD 303 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~------~~ 303 (533)
. +..+..++|+.+..++.. .+. ...+|+|+|++.+. ..+.++++||+||+|.....+. ..
T Consensus 214 f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r 283 (679)
T PRK05580 214 F---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHAR 283 (679)
T ss_pred h---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHH
Confidence 3 567888888877654432 333 34799999998763 3578899999999997653321 12
Q ss_pred HHHHHHHhCCCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecch-------hhHHHHHHHHHh
Q 009512 304 QVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESN-------KKKQKLFDILMS 376 (533)
Q Consensus 304 ~i~~i~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-------~k~~~l~~~l~~ 376 (533)
.+........+.+++++|||++.+....+.......+.+.........+.+.-. ..... .-...+++.+.+
T Consensus 284 ~va~~ra~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~i--d~~~~~~~~~~~~ls~~l~~~i~~ 361 (679)
T PRK05580 284 DLAVVRAKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEII--DMRELLRGENGSFLSPPLLEAIKQ 361 (679)
T ss_pred HHHHHHhhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEE--echhhhhhcccCCCCHHHHHHHHH
Confidence 334444555788999999999866554443322222222211111112222111 11100 012446666666
Q ss_pred ccCCCCCEEEEEcCc------------------------------------------------------------ccHHH
Q 009512 377 KQHFTPPAVVYVGSR------------------------------------------------------------LGADL 396 (533)
Q Consensus 377 ~~~~~~~~lIF~~s~------------------------------------------------------------~~~~~ 396 (533)
....+.++|||+|.+ ..++.
T Consensus 362 ~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~ 441 (679)
T PRK05580 362 RLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTER 441 (679)
T ss_pred HHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHH
Confidence 666677899998853 14567
Q ss_pred HHHHHHhh-cCCeEEEEcCCCCH--HHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCC--C----------
Q 009512 397 LSNAISVT-TGMKALSIHGEKPM--KERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP--N---------- 461 (533)
Q Consensus 397 l~~~l~~~-~~~~~~~ih~~~~~--~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p--~---------- 461 (533)
+++.|.+. .+.++..+|+++.+ .+++.+++.|++|+.+|||+|+++++|+|+|++++|+++|.+ .
T Consensus 442 ~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er 521 (679)
T PRK05580 442 LEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASER 521 (679)
T ss_pred HHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHH
Confidence 77777633 26789999999874 578999999999999999999999999999999999766543 2
Q ss_pred CHhHHHHhhcccCCCCCccEEEEEecCcC
Q 009512 462 SIKEYVHQIGRASQMGDEGTAIVFVNEEN 490 (533)
Q Consensus 462 s~~~y~qriGR~gR~g~~g~~~~l~~~~~ 490 (533)
....|+|++||+||.+..|.+++.....+
T Consensus 522 ~~~~l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 522 TFQLLTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred HHHHHHHHHhhccCCCCCCEEEEEeCCCC
Confidence 23679999999999999999998876544
No 80
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=5.1e-32 Score=256.12 Aligned_cols=339 Identities=21% Similarity=0.317 Sum_probs=254.2
Q ss_pred ccCCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEE
Q 009512 138 SSCSLSQKLLQNIEAA-GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVL 216 (533)
Q Consensus 138 ~~~~l~~~l~~~l~~~-g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil 216 (533)
++++.+.+..+.|+.. ...+++|.|..+|++.++|.++++..|||.||+++|.+|++. ..+.+||+
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~-------------adg~alvi 140 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC-------------ADGFALVI 140 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh-------------cCCceEee
Confidence 3567777777777654 678899999999999999999999999999999999999984 35669999
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHH--HH-HH---HcCCceeecChHHHHHH---HHc--CCCCCCCe
Q 009512 217 TPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ--VY-RI---QQGVELIVGTPGRLIDL---LMK--HDIELDDI 285 (533)
Q Consensus 217 ~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~--~~-~l---~~~~~Iiv~Tp~~l~~~---l~~--~~~~l~~i 285 (533)
+|...|.....-+++.++ +....+....+.... .. .+ .....++..||+++..- +.+ ..+....+
T Consensus 141 ~plislmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~ 216 (695)
T KOG0353|consen 141 CPLISLMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFF 216 (695)
T ss_pred chhHHHHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhccee
Confidence 999999887777777764 333333333333221 11 11 12367999999998432 221 34556788
Q ss_pred eEEEEeccchhhhcc--hHHHHHH---HHHhCCCCcEEEecccCcHHHHHHHHhhcCC--eEEEEeCCCCCCCccceEEE
Q 009512 286 RMFVLDEVDCMLQRG--FRDQVMQ---IFRAISLPQILMYSATISQEVEKMSSSISKD--IVVVSVGKPNMPNKAVKQLA 358 (533)
Q Consensus 286 ~~vVvDEah~~~~~~--~~~~i~~---i~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~i~~~~ 358 (533)
.+|-+||+|+..+|| |++.+.. +.++++...+++++||....+..-+..++.- -+.+..+. ..++....+
T Consensus 217 ~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~f---nr~nl~yev 293 (695)
T KOG0353|consen 217 KLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGF---NRPNLKYEV 293 (695)
T ss_pred EEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeeccc---CCCCceeEe
Confidence 999999999999987 6665543 3456689999999999987776666555432 12222211 112222222
Q ss_pred EEec--chhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q 009512 359 IWVE--SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVI 436 (533)
Q Consensus 359 ~~~~--~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VL 436 (533)
...+ +++-...+..++... -.+...||||-|++.++.++..|+ ..|+.+..+|+.|.+.+|..+-+.|..|++.|+
T Consensus 294 ~qkp~n~dd~~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alk-n~gi~a~~yha~lep~dks~~hq~w~a~eiqvi 371 (695)
T KOG0353|consen 294 RQKPGNEDDCIEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALK-NHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVI 371 (695)
T ss_pred eeCCCChHHHHHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHH-hcCccccccccccCccccccccccccccceEEE
Confidence 2222 223344455555432 234578999999999999999998 899999999999999999999999999999999
Q ss_pred EEeccccccCCCCCccEEEEcCCCCCHhHHHH-------------------------------------------hhccc
Q 009512 437 VATGILGRGVELLGVRQVIIFDMPNSIKEYVH-------------------------------------------QIGRA 473 (533)
Q Consensus 437 vaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~q-------------------------------------------riGR~ 473 (533)
|||-.+++|||-|++++||+.++|.|++.|.| -.||+
T Consensus 372 vatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgra 451 (695)
T KOG0353|consen 372 VATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRA 451 (695)
T ss_pred EEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhcccc
Confidence 99999999999999999999999999999999 67999
Q ss_pred CCCCCccEEEEEecCcCHHHHHHHH
Q 009512 474 SQMGDEGTAIVFVNEENKNLFQELV 498 (533)
Q Consensus 474 gR~g~~g~~~~l~~~~~~~~~~~l~ 498 (533)
||.+.+..|++++.-.|......++
T Consensus 452 grd~~~a~cilyy~~~difk~ssmv 476 (695)
T KOG0353|consen 452 GRDDMKADCILYYGFADIFKISSMV 476 (695)
T ss_pred ccCCCcccEEEEechHHHHhHHHHH
Confidence 9999999999999766554444433
No 81
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=5.6e-32 Score=287.59 Aligned_cols=349 Identities=19% Similarity=0.213 Sum_probs=251.8
Q ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhc-ccCCCCCceEEEEcc
Q 009512 141 SLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRLH-HSQNQKNPLAMVLTP 218 (533)
Q Consensus 141 ~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g-~~vli~a~TGsGKT~~~llp~l~~l~~~~~~-~~~~~~~~~~Lil~P 218 (533)
.+|++-..++. |+..++++|..+.++++.+ .++++|||||+|||.++++-+++.+...... ...+....+++|++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 45555554443 6677999999999999855 5899999999999999999999888754321 122234568999999
Q ss_pred cHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCC--CCCCCeeEEEEeccchh
Q 009512 219 TRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD--IELDDIRMFVLDEVDCM 296 (533)
Q Consensus 219 tr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~--~~l~~i~~vVvDEah~~ 296 (533)
.++|++.|...+.+....+++++.-..|......+. ..+.+|+|+||+++.-+-++.. .-.+-++++|+||.|.+
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 999999999888888888899999999886654421 2458999999999954444321 22346789999999976
Q ss_pred hhcchHHHHHHHHHhC--------CCCcEEEecccCcHH--HHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhh
Q 009512 297 LQRGFRDQVMQIFRAI--------SLPQILMYSATISQE--VEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKK 366 (533)
Q Consensus 297 ~~~~~~~~i~~i~~~~--------~~~q~i~~SAT~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k 366 (533)
-| ..++.++.|..++ ...+++++|||+|+- +..+.+......+.+. ....+.+ +.|.++-+.....
T Consensus 450 hD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd--~syRpvP-L~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 450 HD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFD--SSYRPVP-LKQQYIGITEKKP 525 (1674)
T ss_pred cc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccC--cccCcCC-ccceEeccccCCc
Confidence 44 3567777776665 467999999999972 3333333222222322 2222333 4555554443322
Q ss_pred ---HH----HHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHh------------------------------------
Q 009512 367 ---KQ----KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISV------------------------------------ 403 (533)
Q Consensus 367 ---~~----~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~------------------------------------ 403 (533)
.+ ...+.+..+... +++||||.|++++-..|++++.
T Consensus 526 ~~~~qamNe~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkd 604 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKD 604 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHH
Confidence 22 333444444444 6999999999999888887761
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEE----cCC------CCCHhHHHHhhccc
Q 009512 404 TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII----FDM------PNSIKEYVHQIGRA 473 (533)
Q Consensus 404 ~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~----~~~------p~s~~~y~qriGR~ 473 (533)
...+.+..+|+||+..+|..+.+.|..|.++|||+|..+++|+|+|...++|- ||+ +.++.+.+||+|||
T Consensus 605 LLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgra 684 (1674)
T KOG0951|consen 605 LLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRA 684 (1674)
T ss_pred HhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhc
Confidence 12345678999999999999999999999999999999999999997665553 553 45889999999999
Q ss_pred CCCCC--ccEEEEEecCcCHHHHHHHHH
Q 009512 474 SQMGD--EGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 474 gR~g~--~g~~~~l~~~~~~~~~~~l~~ 499 (533)
||.+. .|..++..+..+..++..+++
T Consensus 685 grp~~D~~gegiiit~~se~qyyls~mn 712 (1674)
T KOG0951|consen 685 GRPQYDTCGEGIIITDHSELQYYLSLMN 712 (1674)
T ss_pred CCCccCcCCceeeccCchHhhhhHHhhh
Confidence 99865 477778777777666665544
No 82
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=3.5e-31 Score=295.42 Aligned_cols=304 Identities=17% Similarity=0.185 Sum_probs=215.7
Q ss_pred HHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH-HHhcCCCCeE
Q 009512 163 MQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK-LLGKGLPFKT 241 (533)
Q Consensus 163 ~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~-~~~~~~~~~~ 241 (533)
.+.+..+..++.++|+|+||||||+ .+|.+..-.. .+...++++..|.|.-|..+...+. ++....|..+
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~-------~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~V 143 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG-------RGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKV 143 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC-------CCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEE
Confidence 3566666677888999999999999 5676643221 1223467778899988887665443 3433333333
Q ss_pred EEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccc-hhhhcchHHH-HHHHHHhCCCCcEEE
Q 009512 242 ALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVD-CMLQRGFRDQ-VMQIFRAISLPQILM 319 (533)
Q Consensus 242 ~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah-~~~~~~~~~~-i~~i~~~~~~~q~i~ 319 (533)
..-...... ...+..|+++|+|.|++.+.... .+.++++||+|||| ++++.+|.-. +..++...++.++|+
T Consensus 144 GY~vR~~~~------~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIl 216 (1283)
T TIGR01967 144 GYKVRFHDQ------VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIII 216 (1283)
T ss_pred eeEEcCCcc------cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEE
Confidence 222222221 13457899999999999987765 48999999999999 5888877654 566766668889999
Q ss_pred ecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecc------hhhHHHHHHHHHhc-cCCCCCEEEEEcCcc
Q 009512 320 YSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES------NKKKQKLFDILMSK-QHFTPPAVVYVGSRL 392 (533)
Q Consensus 320 ~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~------~~k~~~l~~~l~~~-~~~~~~~lIF~~s~~ 392 (533)
||||++. ..+.+.+...++ +.+.....+ +...+..... ..+...+...+... ....+.+|||++++.
T Consensus 217 mSATld~--~~fa~~F~~apv-I~V~Gr~~P---Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~ 290 (1283)
T TIGR01967 217 TSATIDP--ERFSRHFNNAPI-IEVSGRTYP---VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGER 290 (1283)
T ss_pred EeCCcCH--HHHHHHhcCCCE-EEECCCccc---ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHH
Confidence 9999974 567777665554 333333222 2222222111 12334444444332 123468999999999
Q ss_pred cHHHHHHHHHhhc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCC----------
Q 009512 393 GADLLSNAISVTT--GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP---------- 460 (533)
Q Consensus 393 ~~~~l~~~l~~~~--~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p---------- 460 (533)
+++.+++.|.+.. +..+..+||++++++|..+++.+ +..+|||||+++++|||||++++||+++.+
T Consensus 291 EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~ 368 (1283)
T TIGR01967 291 EIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTK 368 (1283)
T ss_pred HHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccC
Confidence 9999999998332 45688999999999999986654 347999999999999999999999998843
Q ss_pred --------CCHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009512 461 --------NSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 461 --------~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
.|...|.||.||+||.| +|.||.|+++.+.
T Consensus 369 ~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 369 VQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred ccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 46789999999999997 9999999987654
No 83
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.2e-30 Score=264.85 Aligned_cols=350 Identities=17% Similarity=0.251 Sum_probs=261.2
Q ss_pred CCHHHHHHH-HHcCCCCCCHHHHHHHHHHhCC------CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEE
Q 009512 142 LSQKLLQNI-EAAGYDMPTPVQMQAIPSALSG------KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM 214 (533)
Q Consensus 142 l~~~l~~~l-~~~g~~~p~~~Q~~~i~~i~~g------~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L 214 (533)
....+.+.+ ...+| ++|..|++++..|... .+-|++|..|||||+++++.++..+. .|.++.
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~----------~G~Q~A 315 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE----------AGYQAA 315 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH----------cCCeeE
Confidence 344455554 55577 8999999999999843 34699999999999999999988764 477899
Q ss_pred EEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchH---HHHHHHHcC-CceeecChHHHHHHHHcCCCCCCCeeEEEE
Q 009512 215 VLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA---RQVYRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVL 290 (533)
Q Consensus 215 il~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVv 290 (533)
.++||.-||.|.+..+.++...+++++..+.|..... .....+.+| .+|+|+| .-+....+.+.++.++|+
T Consensus 316 LMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIi 390 (677)
T COG1200 316 LMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVII 390 (677)
T ss_pred EeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEE
Confidence 9999999999999999999999999999998865543 334455566 9999999 455567778999999999
Q ss_pred eccchhhhcchHHHHHH-HHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHH
Q 009512 291 DEVDCMLQRGFRDQVMQ-IFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQ 368 (533)
Q Consensus 291 DEah~~~~~~~~~~i~~-i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~ 368 (533)
||=||+. -.-+. +..+-. .+.++.||||+=+....+.-...-+.-.|. +.......+... ++. ..+..
T Consensus 391 DEQHRFG-----V~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~Id--ElP~GRkpI~T~--~i~-~~~~~ 460 (677)
T COG1200 391 DEQHRFG-----VHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIID--ELPPGRKPITTV--VIP-HERRP 460 (677)
T ss_pred ecccccc-----HHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhc--cCCCCCCceEEE--Eec-cccHH
Confidence 9999864 22233 333334 589999999985434333332222222222 222222223322 222 34566
Q ss_pred HHHHHHHhccCCCCCEEEEEcCcccH--------HHHHHHHHhhc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe
Q 009512 369 KLFDILMSKQHFTPPAVVYVGSRLGA--------DLLSNAISVTT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVAT 439 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~lIF~~s~~~~--------~~l~~~l~~~~-~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT 439 (533)
.+++.+......+.++.+.|+-.++. +.+++.|+... ++.+..+||.|+..+++++++.|++|+++|||||
T Consensus 461 ~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaT 540 (677)
T COG1200 461 EVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVAT 540 (677)
T ss_pred HHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEe
Confidence 67777776666788999999987655 45555665333 5679999999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEcCCCC-CHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHHHhcCCCCCHHHHhchh
Q 009512 440 GILGRGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRY 517 (533)
Q Consensus 440 ~~~~~Gldi~~v~~VI~~~~p~-s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~~~ 517 (533)
.+++-|+|+|+++++|+.+.-. -.++.-|--||+||.+..++|++++.+...+..++=+++++.+.-.+--.=.|+..
T Consensus 541 TVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL~im~~t~DGF~IAE~DLkl 619 (677)
T COG1200 541 TVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRLKIMRETTDGFVIAEEDLKL 619 (677)
T ss_pred eEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHHHHHHhcCCcceehhhhHhc
Confidence 9999999999999999988754 56777788899999999999999999887677777778888876555433344443
No 84
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.3e-30 Score=284.23 Aligned_cols=331 Identities=17% Similarity=0.203 Sum_probs=217.6
Q ss_pred CCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 157 MPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g--~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.|.|||..+...++.. ..+|+..++|.|||..+.+.+-..+.. +...++|||||. .|..||..++.+..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~--------g~~~rvLIVvP~-sL~~QW~~El~~kF 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT--------GRAERVLILVPE-TLQHQWLVEMLRRF 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc--------CCCCcEEEEcCH-HHHHHHHHHHHHHh
Confidence 5899999998777643 478999999999999876655444332 344679999998 89999999886543
Q ss_pred cCCCCeEEEEEcCCchHHHHH---HHHcCCceeecChHHHHHHHH-cCCCCCCCeeEEEEeccchhhhcc--hHHHHHHH
Q 009512 235 KGLPFKTALVVGGDAMARQVY---RIQQGVELIVGTPGRLIDLLM-KHDIELDDIRMFVLDEVDCMLQRG--FRDQVMQI 308 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~---~l~~~~~Iiv~Tp~~l~~~l~-~~~~~l~~i~~vVvDEah~~~~~~--~~~~i~~i 308 (533)
++.... +++........ ......+++|+|++.+...-. ...+.-..+++||+||||++.... ....+ ..
T Consensus 223 ---~l~~~i-~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y-~~ 297 (956)
T PRK04914 223 ---NLRFSL-FDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY-QV 297 (956)
T ss_pred ---CCCeEE-EcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH-HH
Confidence 233332 22222111000 111236799999987754211 111222468899999999986211 11112 22
Q ss_pred HHhC--CCCcEEEecccCcH----------------------HHH----------HHHH-----------------hhcC
Q 009512 309 FRAI--SLPQILMYSATISQ----------------------EVE----------KMSS-----------------SISK 337 (533)
Q Consensus 309 ~~~~--~~~q~i~~SAT~~~----------------------~~~----------~~~~-----------------~~~~ 337 (533)
+..+ ..+.++++|||+-. .+. ..+. .++.
T Consensus 298 v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~ 377 (956)
T PRK04914 298 VEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLG 377 (956)
T ss_pred HHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhc
Confidence 3333 34678999999631 000 0000 0000
Q ss_pred C-----------------------------------eEEEEeCC---CCCCCccceEE----------------------
Q 009512 338 D-----------------------------------IVVVSVGK---PNMPNKAVKQL---------------------- 357 (533)
Q Consensus 338 ~-----------------------------------~~~i~~~~---~~~~~~~i~~~---------------------- 357 (533)
+ .+.+.-.. ...+.......
T Consensus 378 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~ 457 (956)
T PRK04914 378 EQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARD 457 (956)
T ss_pred ccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHh
Confidence 0 00000000 00000000000
Q ss_pred --------------EEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHH
Q 009512 358 --------------AIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERRE 423 (533)
Q Consensus 358 --------------~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~ 423 (533)
..|...+.|...|.+++.... +.++||||+++..++.+++.|+...|+++..+||+|++.+|..
T Consensus 458 ~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~ 535 (956)
T PRK04914 458 MLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHR--SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDR 535 (956)
T ss_pred hcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcC--CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHH
Confidence 012223345556666665432 5689999999999999999996578999999999999999999
Q ss_pred HHHHHhcC--CCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHHH
Q 009512 424 IMRSFLVG--EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDIL 501 (533)
Q Consensus 424 ~~~~f~~g--~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~l 501 (533)
+++.|+++ ..+|||||+++++|+|++.+++|||||+|++++.|.||+||++|.|+.|.+.++........-..+.+.+
T Consensus 536 ~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~ 615 (956)
T PRK04914 536 AAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWY 615 (956)
T ss_pred HHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHH
Confidence 99999984 6999999999999999999999999999999999999999999999999877776554444455555555
Q ss_pred Hh
Q 009512 502 KS 503 (533)
Q Consensus 502 ~~ 503 (533)
..
T Consensus 616 ~~ 617 (956)
T PRK04914 616 HE 617 (956)
T ss_pred hh
Confidence 54
No 85
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.98 E-value=1.4e-30 Score=269.72 Aligned_cols=292 Identities=20% Similarity=0.268 Sum_probs=202.5
Q ss_pred CCCCHHHHHHHHHHhC----CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009512 156 DMPTPVQMQAIPSALS----GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~----g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..|+++|.+++..+.. ++..++++|||+|||.+++..+-. + +..+|||+||++|+.||.+.+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~------------~~~~Lvlv~~~~L~~Qw~~~~~ 101 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-L------------KRSTLVLVPTKELLDQWAEALK 101 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-h------------cCCEEEEECcHHHHHHHHHHHH
Confidence 4789999999999997 899999999999999976554432 2 2239999999999999987666
Q ss_pred HHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHh
Q 009512 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA 311 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~ 311 (533)
.+.... .....+||..... .. ..|+|+|.+.+...........+.+++||+||||++....+. .+...
T Consensus 102 ~~~~~~--~~~g~~~~~~~~~-----~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~----~~~~~ 169 (442)
T COG1061 102 KFLLLN--DEIGIYGGGEKEL-----EP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR----RILEL 169 (442)
T ss_pred HhcCCc--cccceecCceecc-----CC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH----HHHHh
Confidence 654321 2344445433221 11 369999999997753222233447999999999998765433 44455
Q ss_pred CCCCc-EEEecccCcHHHHHHHHhhc--CCeEEEEeCCCC------CCCccceEEEE-----------------------
Q 009512 312 ISLPQ-ILMYSATISQEVEKMSSSIS--KDIVVVSVGKPN------MPNKAVKQLAI----------------------- 359 (533)
Q Consensus 312 ~~~~q-~i~~SAT~~~~~~~~~~~~~--~~~~~i~~~~~~------~~~~~i~~~~~----------------------- 359 (533)
+.... +++||||+++........+. ..++.+...... ..+..+.....
T Consensus 170 ~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~ 249 (442)
T COG1061 170 LSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA 249 (442)
T ss_pred hhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh
Confidence 54555 99999998643211111100 001222211110 00000000000
Q ss_pred -------------EecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHH
Q 009512 360 -------------WVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMR 426 (533)
Q Consensus 360 -------------~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~ 426 (533)
......+...+..++.... .+.+++||+.+..++..++..+. ..+. +..+.|..+..+|..+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~-~~~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 250 RGTLRAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFL-APGI-VEAITGETPKEEREAILE 326 (442)
T ss_pred hhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhc-CCCc-eEEEECCCCHHHHHHHHH
Confidence 0011112222333333333 46799999999999999999998 5555 889999999999999999
Q ss_pred HHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCC
Q 009512 427 SFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQ 475 (533)
Q Consensus 427 ~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR 475 (533)
.|+.|.+++||++.++.+|+|+|+++++|...+..|...|+||+||.-|
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999
No 86
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1e-29 Score=271.81 Aligned_cols=315 Identities=17% Similarity=0.194 Sum_probs=234.9
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009512 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.|+++|.-.--++..|+ |+.++||+|||++|.+|++..++. +..++|++||++||.|.++++..+...
T Consensus 82 ~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~----------G~~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 82 RHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS----------GRGVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred CcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc----------CCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 67788887766666665 899999999999999999977653 345999999999999999999999999
Q ss_pred CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcC-CCCC-----CCeeEEEEeccchhhhc----------
Q 009512 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH-DIEL-----DDIRMFVLDEVDCMLQR---------- 299 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~-~~~l-----~~i~~vVvDEah~~~~~---------- 299 (533)
+++++.+++||.+...+.... .++|+++||++| .++++.+ .+.+ ..+.++|+||||.|+=.
T Consensus 150 lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg 227 (896)
T PRK13104 150 LGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISG 227 (896)
T ss_pred cCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeC
Confidence 999999999998776654433 589999999999 9998876 3344 58999999999998610
Q ss_pred ------chHHHHHHHHHhCC---------------CCcEEE---------------------------------------
Q 009512 300 ------GFRDQVMQIFRAIS---------------LPQILM--------------------------------------- 319 (533)
Q Consensus 300 ------~~~~~i~~i~~~~~---------------~~q~i~--------------------------------------- 319 (533)
.....+..+...+. ..+.+.
T Consensus 228 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~ 307 (896)
T PRK13104 228 AAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNA 307 (896)
T ss_pred CCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHH
Confidence 01112222222110 112222
Q ss_pred -----------------------------------------------------------------------------ecc
Q 009512 320 -----------------------------------------------------------------------------YSA 322 (533)
Q Consensus 320 -----------------------------------------------------------------------------~SA 322 (533)
||+
T Consensus 308 aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTG 387 (896)
T PRK13104 308 ALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTG 387 (896)
T ss_pred HHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCC
Confidence 222
Q ss_pred cCcHHHHHHHHhhcCCeEEEEeCCCCCCCcc-ceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHH
Q 009512 323 TISQEVEKMSSSISKDIVVVSVGKPNMPNKA-VKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAI 401 (533)
Q Consensus 323 T~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l 401 (533)
|...+..++...+..+.+.+... .+... -.....+.....|...+.+.+......+.|+||||+|+..++.++..|
T Consensus 388 Ta~te~~Ef~~iY~l~Vv~IPtn---kp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L 464 (896)
T PRK13104 388 TADTEAYEFQQIYNLEVVVIPTN---RSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLL 464 (896)
T ss_pred CChhHHHHHHHHhCCCEEECCCC---CCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHH
Confidence 22222222222222222222111 11100 012234556677888888888777778889999999999999999999
Q ss_pred HhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCc------------------------------
Q 009512 402 SVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV------------------------------ 451 (533)
Q Consensus 402 ~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v------------------------------ 451 (533)
. ..|+++..+|+.+.+.++..+.+.|+.|. |+|||++++||+||.=-
T Consensus 465 ~-~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (896)
T PRK13104 465 K-KENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRH 541 (896)
T ss_pred H-HcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhh
Confidence 8 89999999999999999999999999995 99999999999998621
Q ss_pred --------cEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009512 452 --------RQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 452 --------~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
=+||-...+.|-.--.|-.||+||.|.+|.+-.|++-+|.
T Consensus 542 ~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 542 DEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred hHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 2688888899999999999999999999999999987664
No 87
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.2e-29 Score=265.63 Aligned_cols=290 Identities=17% Similarity=0.227 Sum_probs=203.5
Q ss_pred EEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHH--
Q 009512 176 LVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ-- 253 (533)
Q Consensus 176 li~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-- 253 (533)
|+.|+||||||.+|+..+... +. .+.++||++|+++|+.|+.+.+++.. +..+..++++.+..+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~-l~---------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKV-LA---------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHH-HH---------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHH
Confidence 578999999999986554333 32 35679999999999999998887653 4567778887665443
Q ss_pred -HHHHHc-CCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcc-----h-HHHHHHHHHhCCCCcEEEecccCc
Q 009512 254 -VYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-----F-RDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 254 -~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~-----~-~~~i~~i~~~~~~~q~i~~SAT~~ 325 (533)
+..+.. ..+|||+|+..+. ..+.++++|||||+|.....+ | ...+..........++|++|||++
T Consensus 68 ~~~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs 140 (505)
T TIGR00595 68 AWRKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS 140 (505)
T ss_pred HHHHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 333333 4789999998763 357889999999999875322 1 133455566668899999999988
Q ss_pred HHHHHHHHhhcCCeEEEEeCCC--CCCCccceEEEEEecch----hhHHHHHHHHHhccCCCCCEEEEEcCccc------
Q 009512 326 QEVEKMSSSISKDIVVVSVGKP--NMPNKAVKQLAIWVESN----KKKQKLFDILMSKQHFTPPAVVYVGSRLG------ 393 (533)
Q Consensus 326 ~~~~~~~~~~~~~~~~i~~~~~--~~~~~~i~~~~~~~~~~----~k~~~l~~~l~~~~~~~~~~lIF~~s~~~------ 393 (533)
.+....+.. .....+..... ....+.+. +...... .-...+++.+.+....+.++|||+|++..
T Consensus 141 les~~~~~~--g~~~~~~l~~r~~~~~~p~v~--vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C 216 (505)
T TIGR00595 141 LESYHNAKQ--KAYRLLVLTRRVSGRKPPEVK--LIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLC 216 (505)
T ss_pred HHHHHHHhc--CCeEEeechhhhcCCCCCeEE--EEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEh
Confidence 655444322 22222222111 11122111 1111111 11245667776666677899999887642
Q ss_pred ------------------------------------------------------HHHHHHHHHhhc-CCeEEEEcCCCCH
Q 009512 394 ------------------------------------------------------ADLLSNAISVTT-GMKALSIHGEKPM 418 (533)
Q Consensus 394 ------------------------------------------------------~~~l~~~l~~~~-~~~~~~ih~~~~~ 418 (533)
.+.+++.|.+.. +.++..+|+++++
T Consensus 217 ~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~ 296 (505)
T TIGR00595 217 RSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTS 296 (505)
T ss_pred hhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEeccccc
Confidence 477777877443 6789999999987
Q ss_pred HHH--HHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCC------------CHhHHHHhhcccCCCCCccEEEE
Q 009512 419 KER--REIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN------------SIKEYVHQIGRASQMGDEGTAIV 484 (533)
Q Consensus 419 ~~r--~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~------------s~~~y~qriGR~gR~g~~g~~~~ 484 (533)
..+ +.+++.|++|+.+|||+|+++++|+|+|++++|+.+|... ....|+|++||+||.+..|.+++
T Consensus 297 ~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 297 RKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred CccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEE
Confidence 765 8999999999999999999999999999999987554431 24678999999999999999987
Q ss_pred EecCc
Q 009512 485 FVNEE 489 (533)
Q Consensus 485 l~~~~ 489 (533)
.....
T Consensus 377 qt~~p 381 (505)
T TIGR00595 377 QTYNP 381 (505)
T ss_pred EeCCC
Confidence 66433
No 88
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=5.8e-30 Score=239.75 Aligned_cols=201 Identities=39% Similarity=0.714 Sum_probs=181.4
Q ss_pred cccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEE
Q 009512 137 FSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVL 216 (533)
Q Consensus 137 f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil 216 (533)
|+++++++.+.+.+...|+..|+++|.++++.++.|+++++.+|||+|||++|++|++.++...+ ...+++++|+
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~-----~~~~~~viii 75 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP-----KKDGPQALIL 75 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc-----ccCCceEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999887632 1357889999
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchh
Q 009512 217 TPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCM 296 (533)
Q Consensus 217 ~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~ 296 (533)
+|+++|+.|+...++.+....+..+..+.|+.........+..+++|+|+||++|.+++.+....+.+++++|+||+|.+
T Consensus 76 ~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~ 155 (203)
T cd00268 76 APTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRM 155 (203)
T ss_pred cCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHh
Confidence 99999999999999999887788889999998887766666668999999999999999988888899999999999999
Q ss_pred hhcchHHHHHHHHHhCC-CCcEEEecccCcHHHHHHHHhhcCCeEEE
Q 009512 297 LQRGFRDQVMQIFRAIS-LPQILMYSATISQEVEKMSSSISKDIVVV 342 (533)
Q Consensus 297 ~~~~~~~~i~~i~~~~~-~~q~i~~SAT~~~~~~~~~~~~~~~~~~i 342 (533)
.+.++...+..++..+. ..+++++|||+++.+..+...+..+++.+
T Consensus 156 ~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 156 LDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 98889999999888885 68999999999999999999888887765
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=6.5e-29 Score=271.24 Aligned_cols=312 Identities=13% Similarity=0.138 Sum_probs=203.5
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 155 ~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
...|+|+|..+......+..+++.||||+|||.++++++...+.. +...+++|..||+++++|+++.++++.
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~--------~~~~gi~~aLPT~Atan~m~~Rl~~~~ 355 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ--------GLADSIIFALPTQATANAMLSRLEALA 355 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh--------CCCCeEEEECcHHHHHHHHHHHHHHHH
Confidence 458999999886554456678999999999999987766543322 345679999999999999999887644
Q ss_pred cCC--CCeEEEEEcCCchHHHHH--------------------HHH----c---CCceeecChHHHHHHHHcC-CCCCCC
Q 009512 235 KGL--PFKTALVVGGDAMARQVY--------------------RIQ----Q---GVELIVGTPGRLIDLLMKH-DIELDD 284 (533)
Q Consensus 235 ~~~--~~~~~~~~gg~~~~~~~~--------------------~l~----~---~~~Iiv~Tp~~l~~~l~~~-~~~l~~ 284 (533)
... ...+.+++|......... ... + -.+|+|||+.+++.-.... ...+..
T Consensus 356 ~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~ 435 (878)
T PRK09694 356 SKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRG 435 (878)
T ss_pred HHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHH
Confidence 321 234566665443211100 001 1 1689999999987544332 112222
Q ss_pred e----eEEEEeccchhhhcchHHHHHHHHHhC--CCCcEEEecccCcHHHHHH-HHhhcCC-eE-------EEE------
Q 009512 285 I----RMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEVEKM-SSSISKD-IV-------VVS------ 343 (533)
Q Consensus 285 i----~~vVvDEah~~~~~~~~~~i~~i~~~~--~~~q~i~~SAT~~~~~~~~-~~~~~~~-~~-------~i~------ 343 (533)
+ ++|||||+|.+ +......+..+++.+ ....+|+||||+|....+. ...+... .. .+.
T Consensus 436 ~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~ 514 (878)
T PRK09694 436 FGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNG 514 (878)
T ss_pred HhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccc
Confidence 2 48999999976 332334455555544 3567999999999876543 3322111 00 000
Q ss_pred -----eCCCCCC-CccceEEEEEe--cchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhc--CCeEEEEc
Q 009512 344 -----VGKPNMP-NKAVKQLAIWV--ESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT--GMKALSIH 413 (533)
Q Consensus 344 -----~~~~~~~-~~~i~~~~~~~--~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~--~~~~~~ih 413 (533)
....... .......+... ........+++.+.+....++++|||||++..|+.+++.|++.. ...+..+|
T Consensus 515 ~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llH 594 (878)
T PRK09694 515 AQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFH 594 (878)
T ss_pred ceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEe
Confidence 0000000 00000011111 11111233444444433456789999999999999999998433 26799999
Q ss_pred CCCCHHHH----HHHHHHH-hcCC---CcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCC
Q 009512 414 GEKPMKER----REIMRSF-LVGE---VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD 478 (533)
Q Consensus 414 ~~~~~~~r----~~~~~~f-~~g~---~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~ 478 (533)
|.++..+| ..+++.| ++|+ ..|||||+++++|||| +++++|....| ++.++||+||++|.+.
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999999 4567788 6665 4799999999999999 58999998888 7899999999999875
No 90
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.6e-29 Score=267.56 Aligned_cols=315 Identities=19% Similarity=0.217 Sum_probs=242.5
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009512 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.|+++|.-..-.+..|+ ++.+.||+|||+++.+|++...+. +..+-|++||..||.|..+++..+...
T Consensus 81 ~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~----------G~~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 81 RHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT----------GKGVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred CCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc----------CCCEEEEecCHHHHHHHHHHHHHHHhh
Confidence 78899988887777775 899999999999999999754442 234779999999999999999999999
Q ss_pred CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcCC------CCCCCeeEEEEeccchhhh-----------
Q 009512 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELDDIRMFVLDEVDCMLQ----------- 298 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~~i~~vVvDEah~~~~----------- 298 (533)
+++++.++.|+.+...+...+ .++|+++||++| .++++.+- ..+..+.++|+||||.|+=
T Consensus 149 LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg 226 (830)
T PRK12904 149 LGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISG 226 (830)
T ss_pred cCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeEC
Confidence 999999999998877655543 489999999999 88887653 2367899999999999751
Q ss_pred -----cchHHHHHHHHHhCC---------CC-------------------------------------------------
Q 009512 299 -----RGFRDQVMQIFRAIS---------LP------------------------------------------------- 315 (533)
Q Consensus 299 -----~~~~~~i~~i~~~~~---------~~------------------------------------------------- 315 (533)
......+..+...+. ..
T Consensus 227 ~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~d 306 (830)
T PRK12904 227 PAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVD 306 (830)
T ss_pred CCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 001222222222220 01
Q ss_pred ------------------------------------------------------------cEEEecccCcHHHHHHHHhh
Q 009512 316 ------------------------------------------------------------QILMYSATISQEVEKMSSSI 335 (533)
Q Consensus 316 ------------------------------------------------------------q~i~~SAT~~~~~~~~~~~~ 335 (533)
++.+||+|...+..++...+
T Consensus 307 YiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 386 (830)
T PRK12904 307 YIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY 386 (830)
T ss_pred EEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh
Confidence 34455555555555555555
Q ss_pred cCCeEEEEeCCCCCCCccce-EEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcC
Q 009512 336 SKDIVVVSVGKPNMPNKAVK-QLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHG 414 (533)
Q Consensus 336 ~~~~~~i~~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~ 414 (533)
..+.+.+.... +..... ....+.....|...+.+.+......+.|+||||+|+..++.++..|. ..++++..+|+
T Consensus 387 ~l~vv~IPtnk---p~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~-~~gi~~~vLna 462 (830)
T PRK12904 387 NLDVVVIPTNR---PMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLK-KAGIPHNVLNA 462 (830)
T ss_pred CCCEEEcCCCC---CeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH-HCCCceEeccC
Confidence 54444443221 211111 22345566778888888887755667899999999999999999998 78999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCc--------------------------------------cEEEE
Q 009512 415 EKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGV--------------------------------------RQVII 456 (533)
Q Consensus 415 ~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v--------------------------------------~~VI~ 456 (533)
. +.+|+..+..|..+...|+|||++++||+||+-- =+||-
T Consensus 463 k--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVig 540 (830)
T PRK12904 463 K--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIG 540 (830)
T ss_pred c--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEe
Confidence 5 7799999999999999999999999999998742 27888
Q ss_pred cCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009512 457 FDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 457 ~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
...|.|-.--.|-.||+||.|.+|.+-.|++-+|.
T Consensus 541 TerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 541 TERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred cccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 88999999999999999999999999999987654
No 91
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=3.1e-28 Score=263.37 Aligned_cols=368 Identities=20% Similarity=0.242 Sum_probs=276.2
Q ss_pred ccccCCcCccCcCCCHHHHHHHHhhcCceEec---C----CCCCcccCcccCCCCHHHHHHHHHc-CCCCCCHHHHHHHH
Q 009512 96 YVRESDENSGFQSLTIGQTDSLRKRLEINVKG---D----AVPAPILSFSSCSLSQKLLQNIEAA-GYDMPTPVQMQAIP 167 (533)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~----~~p~~~~~f~~~~l~~~l~~~l~~~-g~~~p~~~Q~~~i~ 167 (533)
|...+.+++.+..+....|.+.+.+..-.+.. + ..-+....=-.++.+......+... +| .-||-|..||.
T Consensus 526 Y~g~~~~~p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPy-eET~DQl~AI~ 604 (1139)
T COG1197 526 YVGASDEAPKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPY-EETPDQLKAIE 604 (1139)
T ss_pred ccCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhcCCC-cCCHHHHHHHH
Confidence 66677777889999999999987765422211 1 0001111111245566677777665 44 77999999999
Q ss_pred HHh----CC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeE
Q 009512 168 SAL----SG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKT 241 (533)
Q Consensus 168 ~i~----~g--~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~ 241 (533)
.+. ++ .|-||||..|-|||.+++-+++..+. .|+.|.|||||--||+|.++.+++.+.++++++
T Consensus 605 eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~----------~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I 674 (1139)
T COG1197 605 EVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM----------DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRI 674 (1139)
T ss_pred HHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc----------CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeE
Confidence 987 33 47799999999999999888887665 368899999999999999999999999999999
Q ss_pred EEEEcCCchHHHHHH---HHcC-CceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcE
Q 009512 242 ALVVGGDAMARQVYR---IQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQI 317 (533)
Q Consensus 242 ~~~~gg~~~~~~~~~---l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~ 317 (533)
..+..=.+...+... +..| .+|||+| +-+....+.+++++++||||-|++.-. +=+.+.+.-.+.-+
T Consensus 675 ~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEEqRFGVk----~KEkLK~Lr~~VDv 745 (1139)
T COG1197 675 EVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEEQRFGVK----HKEKLKELRANVDV 745 (1139)
T ss_pred EEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEechhhcCcc----HHHHHHHHhccCcE
Confidence 888776665554433 3444 8999999 445567778999999999999996422 22233333367889
Q ss_pred EEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHH
Q 009512 318 LMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLL 397 (533)
Q Consensus 318 i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l 397 (533)
+-||||+=+....++-....+.-.|.....+. -.++.++.-.+. ..+.+.+.+....++++-...|..+..+.+
T Consensus 746 LTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R--~pV~T~V~~~d~----~~ireAI~REl~RgGQvfYv~NrV~~Ie~~ 819 (1139)
T COG1197 746 LTLSATPIPRTLNMSLSGIRDLSVIATPPEDR--LPVKTFVSEYDD----LLIREAILRELLRGGQVFYVHNRVESIEKK 819 (1139)
T ss_pred EEeeCCCCcchHHHHHhcchhhhhccCCCCCC--cceEEEEecCCh----HHHHHHHHHHHhcCCEEEEEecchhhHHHH
Confidence 99999985556666666666665554333222 123333332222 234444444446678899999999999999
Q ss_pred HHHHHh-hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCC-CHhHHHHhhcccCC
Q 009512 398 SNAISV-TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN-SIKEYVHQIGRASQ 475 (533)
Q Consensus 398 ~~~l~~-~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~-s~~~y~qriGR~gR 475 (533)
+..|+. ....++.+.||.|+..+-+.++..|.+|+++|||||.+++.|||||+++++|+-+... -.++..|.-||+||
T Consensus 820 ~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGR 899 (1139)
T COG1197 820 AERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGR 899 (1139)
T ss_pred HHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCC
Confidence 999973 2356788999999999999999999999999999999999999999999999977654 67889999999999
Q ss_pred CCCccEEEEEecCc
Q 009512 476 MGDEGTAIVFVNEE 489 (533)
Q Consensus 476 ~g~~g~~~~l~~~~ 489 (533)
.++.++||.++.+.
T Consensus 900 S~~~AYAYfl~p~~ 913 (1139)
T COG1197 900 SNKQAYAYFLYPPQ 913 (1139)
T ss_pred ccceEEEEEeecCc
Confidence 99999999999853
No 92
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.5e-28 Score=262.27 Aligned_cols=148 Identities=19% Similarity=0.319 Sum_probs=130.7
Q ss_pred ccCCCCHHHHHHHH-----HcCCCCC---CHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCC
Q 009512 138 SSCSLSQKLLQNIE-----AAGYDMP---TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQK 209 (533)
Q Consensus 138 ~~~~l~~~l~~~l~-----~~g~~~p---~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 209 (533)
+.+.+..++...+. ..||..| +|+|.|+++.+..++++++.++||+|||++|++|++..++.
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~---------- 134 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT---------- 134 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh----------
Confidence 45678888888877 5799999 99999999999999999999999999999999999987763
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcCCCCCC-----
Q 009512 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHDIELD----- 283 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~~~l~----- 283 (533)
+..++||+||++||.|..+++..+.+.+++++.+++||.+...+...+ +++|+|+||++| .++++.+.+.++
T Consensus 135 g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~v 212 (970)
T PRK12899 135 GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQV 212 (970)
T ss_pred cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhh
Confidence 123899999999999999999999999999999999999988876554 589999999999 999998766555
Q ss_pred --CeeEEEEeccchhh
Q 009512 284 --DIRMFVLDEVDCML 297 (533)
Q Consensus 284 --~i~~vVvDEah~~~ 297 (533)
.+.++|+||||.|+
T Consensus 213 qr~~~~~IIDEADsmL 228 (970)
T PRK12899 213 GRGFYFAIIDEVDSIL 228 (970)
T ss_pred cccccEEEEechhhhh
Confidence 56899999999986
No 93
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.97 E-value=1.1e-28 Score=258.91 Aligned_cols=347 Identities=20% Similarity=0.220 Sum_probs=252.0
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHH--HHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceE
Q 009512 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAI--PSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i--~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
.+...+++....-.....|...++.||.+++ +.++.+++.+..+||+.|||+++.+.++..++.. ...+
T Consensus 202 ~~a~~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---------rr~~ 272 (1008)
T KOG0950|consen 202 GFAKRLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---------RRNV 272 (1008)
T ss_pred hhhhcCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---------hhce
Confidence 3333445555555566679999999999997 6678899999999999999999999999887753 3458
Q ss_pred EEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHc--CCCCCCCeeEEEEe
Q 009512 214 MVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK--HDIELDDIRMFVLD 291 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~--~~~~l~~i~~vVvD 291 (533)
+.+.|....+..-.+.+..+...+|+.+...+|..+.... .+..++.|||.++-..++.+ ..-.+..+++||||
T Consensus 273 llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVd 348 (1008)
T KOG0950|consen 273 LLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVD 348 (1008)
T ss_pred eEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEe
Confidence 9999998888877778888888889888887776655442 23468999999998766654 23357789999999
Q ss_pred ccchhhhcchHHHHHHHHHhC------CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCcc-ceEEEEEecch
Q 009512 292 EVDCMLQRGFRDQVMQIFRAI------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKA-VKQLAIWVESN 364 (533)
Q Consensus 292 Eah~~~~~~~~~~i~~i~~~~------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-i~~~~~~~~~~ 364 (533)
|.|.+.+.+.+..++.++.++ ...|+|+||||+++ +. +...++...+... ..+..+... +.--....+.
T Consensus 349 Elhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N-~~-lL~~~L~A~~y~t-~fRPv~L~E~ik~G~~i~~~- 424 (1008)
T KOG0950|consen 349 ELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPN-NS-LLQDWLDAFVYTT-RFRPVPLKEYIKPGSLIYES- 424 (1008)
T ss_pred eeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCC-hH-HHHHHhhhhheec-ccCcccchhccCCCcccccc-
Confidence 999999999888888888876 34579999999986 22 2333333222211 111111100 0000000000
Q ss_pred hhH-------------------HHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHh----------------------
Q 009512 365 KKK-------------------QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISV---------------------- 403 (533)
Q Consensus 365 ~k~-------------------~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~---------------------- 403 (533)
.+. +.+..+..+....+.++||||+++..|+.++..+.+
T Consensus 425 ~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~ 504 (1008)
T KOG0950|consen 425 SRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISN 504 (1008)
T ss_pred hhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHh
Confidence 011 222233333334455799999999999988865531
Q ss_pred ---------------hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcC----CCCCHh
Q 009512 404 ---------------TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD----MPNSIK 464 (533)
Q Consensus 404 ---------------~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~----~p~s~~ 464 (533)
...+.+.++|+|++.++|+.+...|++|.+.|++||++++.|+|+|..+++|-.- ...+..
T Consensus 505 ~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~ 584 (1008)
T KOG0950|consen 505 LLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRL 584 (1008)
T ss_pred HhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhh
Confidence 1123466899999999999999999999999999999999999999888887643 345788
Q ss_pred HHHHhhcccCCCCC--ccEEEEEecCcCHHHHHHHHH
Q 009512 465 EYVHQIGRASQMGD--EGTAIVFVNEENKNLFQELVD 499 (533)
Q Consensus 465 ~y~qriGR~gR~g~--~g~~~~l~~~~~~~~~~~l~~ 499 (533)
+|.||+|||||+|- .|.+++++.+.++....++++
T Consensus 585 ~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 585 EYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hHHhhhhhhhhcccccCcceEEEeeccchhHHHHHHh
Confidence 99999999999975 499999999998877665543
No 94
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.1e-28 Score=262.87 Aligned_cols=315 Identities=18% Similarity=0.231 Sum_probs=233.7
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009512 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.|+++|.-+.-.+..|+ |+.+.||+|||+++.+|++..++. |..+-+++||..||.|-++++..+...
T Consensus 80 ~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~----------G~~v~vvT~neyLA~Rd~e~~~~~~~~ 147 (796)
T PRK12906 80 RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT----------GKGVHVVTVNEYLSSRDATEMGELYRW 147 (796)
T ss_pred CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc----------CCCeEEEeccHHHHHhhHHHHHHHHHh
Confidence 78899998877777776 999999999999999999887764 566999999999999999999999999
Q ss_pred CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcC------CCCCCCeeEEEEeccchhhh-----------
Q 009512 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQ----------- 298 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~i~~vVvDEah~~~~----------- 298 (533)
+|+++.++.++.+...... .-.++|+.+|...| .++++.+ ......+.+.||||+|.++=
T Consensus 148 LGl~vg~i~~~~~~~~r~~--~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg 225 (796)
T PRK12906 148 LGLTVGLNLNSMSPDEKRA--AYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISG 225 (796)
T ss_pred cCCeEEEeCCCCCHHHHHH--HhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCC
Confidence 9999999988765554322 23589999999887 3444332 11235688999999998751
Q ss_pred ----c-chHHHHHHHHHhCC--------------------CC--------------------------------------
Q 009512 299 ----R-GFRDQVMQIFRAIS--------------------LP-------------------------------------- 315 (533)
Q Consensus 299 ----~-~~~~~i~~i~~~~~--------------------~~-------------------------------------- 315 (533)
+ .....+..+...+. ..
T Consensus 226 ~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al 305 (796)
T PRK12906 226 QAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQAL 305 (796)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHH
Confidence 0 01111111111110 00
Q ss_pred -----------------------------------------------------------------------cEEEecccC
Q 009512 316 -----------------------------------------------------------------------QILMYSATI 324 (533)
Q Consensus 316 -----------------------------------------------------------------------q~i~~SAT~ 324 (533)
++.+||+|.
T Consensus 306 ~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa 385 (796)
T PRK12906 306 RANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTA 385 (796)
T ss_pred HHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCC
Confidence 233444444
Q ss_pred cHHHHHHHHhhcCCeEEEEeCCCCCCCccc-eEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHh
Q 009512 325 SQEVEKMSSSISKDIVVVSVGKPNMPNKAV-KQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISV 403 (533)
Q Consensus 325 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~ 403 (533)
..+...+...+..+.+.+... .+.... .....+.....|...+.+.+......+.|+||||+|+..++.++..|.
T Consensus 386 ~~e~~Ef~~iY~l~vv~IPtn---kp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~- 461 (796)
T PRK12906 386 KTEEEEFREIYNMEVITIPTN---RPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLD- 461 (796)
T ss_pred HHHHHHHHHHhCCCEEEcCCC---CCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHH-
Confidence 443344444343333333221 111111 112334556678888888887766678899999999999999999998
Q ss_pred hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCC---Ccc-----EEEEcCCCCCHhHHHHhhcccCC
Q 009512 404 TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELL---GVR-----QVIIFDMPNSIKEYVHQIGRASQ 475 (533)
Q Consensus 404 ~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~---~v~-----~VI~~~~p~s~~~y~qriGR~gR 475 (533)
..++++..+|+++.+.++..+.+.++.|. |+|||++++||+||+ +|. +||+++.|.|...|.|++||+||
T Consensus 462 ~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGR 539 (796)
T PRK12906 462 EAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGR 539 (796)
T ss_pred HCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhcc
Confidence 78999999999999888888888777776 999999999999995 888 99999999999999999999999
Q ss_pred CCCccEEEEEecCcCH
Q 009512 476 MGDEGTAIVFVNEENK 491 (533)
Q Consensus 476 ~g~~g~~~~l~~~~~~ 491 (533)
.|.+|.+..|++.+|.
T Consensus 540 qG~~G~s~~~~sleD~ 555 (796)
T PRK12906 540 QGDPGSSRFYLSLEDD 555 (796)
T ss_pred CCCCcceEEEEeccch
Confidence 9999999999998754
No 95
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.96 E-value=8.6e-27 Score=218.78 Aligned_cols=308 Identities=20% Similarity=0.256 Sum_probs=225.2
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~----~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
+++|.|+.+-+.+. +..+.|++|-||+|||.. +.+.+...++ .|.++.+.+|+...+..++..++.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~---------~G~~vciASPRvDVclEl~~Rlk~ 166 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN---------QGGRVCIASPRVDVCLELYPRLKQ 166 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh---------cCCeEEEecCcccchHHHHHHHHH
Confidence 67899998877665 678999999999999985 5666666663 578899999999998888877776
Q ss_pred HhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHH-HH-H
Q 009512 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQ-IF-R 310 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~-i~-~ 310 (533)
-.. +....+++|+..... . .+++|||...|+++.. .++++|+||+|.+.-..- ..+.. +- .
T Consensus 167 aF~--~~~I~~Lyg~S~~~f------r-~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d-~~L~~Av~~a 229 (441)
T COG4098 167 AFS--NCDIDLLYGDSDSYF------R-APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDD-QSLQYAVKKA 229 (441)
T ss_pred hhc--cCCeeeEecCCchhc------c-ccEEEEehHHHHHHHh-------hccEEEEeccccccccCC-HHHHHHHHHh
Confidence 554 356778888765433 2 6899999999988754 467899999997642211 11222 21 2
Q ss_pred hCCCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhH-------HHHHHHHHhccCCCCC
Q 009512 311 AISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK-------QKLFDILMSKQHFTPP 383 (533)
Q Consensus 311 ~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~-------~~l~~~l~~~~~~~~~ 383 (533)
+-....+|.+|||++++++.-+..-...++.+.....+.+. ....+.|...-.|. .+|..++......+.|
T Consensus 230 rk~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pL--pvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 230 RKKEGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPL--PVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred hcccCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCC--CCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCc
Confidence 22566789999999988776554443333443333222222 23344555543332 3677888777777889
Q ss_pred EEEEEcCcccHHHHHHHHHhhcCC-eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCC--
Q 009512 384 AVVYVGSRLGADLLSNAISVTTGM-KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMP-- 460 (533)
Q Consensus 384 ~lIF~~s~~~~~~l~~~l~~~~~~-~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p-- 460 (533)
++||+++.+..+.++..|++..+. ....+|+... .|.+..+.|++|++.+||+|.+++||+.+|++++.+.-.--
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v 385 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV 385 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc
Confidence 999999999999999999645544 4478887654 79999999999999999999999999999999987765433
Q ss_pred CCHhHHHHhhcccCCCCC--ccEEEEEecCcCHHHHH
Q 009512 461 NSIKEYVHQIGRASQMGD--EGTAIVFVNEENKNLFQ 495 (533)
Q Consensus 461 ~s~~~y~qriGR~gR~g~--~g~~~~l~~~~~~~~~~ 495 (533)
.+-+..+|..||+||.-. .|.++.|..-..+.+.+
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~ 422 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQ 422 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHH
Confidence 678899999999999743 57777776655554443
No 96
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=9.3e-28 Score=250.08 Aligned_cols=310 Identities=20% Similarity=0.217 Sum_probs=227.1
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009512 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
+|-++|++||-.+..|.+++|.|+|.+|||+++..++...- ..+.+++|.+|-++|-+|-++.++.-...
T Consensus 297 elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq----------~h~TR~iYTSPIKALSNQKfRDFk~tF~D 366 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ----------KHMTRTIYTSPIKALSNQKFRDFKETFGD 366 (1248)
T ss_pred CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH----------hhccceEecchhhhhccchHHHHHHhccc
Confidence 78899999999999999999999999999999887765332 23567999999999999988888876554
Q ss_pred CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-CCC
Q 009512 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLP 315 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~~~ 315 (533)
.| ++.|.... ......+|+|.+.|.+++.++.--+.++.+||+||+|.+.|...+-.++.++-.+ ...
T Consensus 367 vg----LlTGDvqi-------nPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 367 VG----LLTGDVQI-------NPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred cc----eeecceee-------CCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 43 45554332 3457899999999999999988778999999999999999877777777776666 457
Q ss_pred cEEEecccCcHH--HHHHHHhhcCCeE-EEEeCCCCCCCccceEE----E-------E----------------------
Q 009512 316 QILMYSATISQE--VEKMSSSISKDIV-VVSVGKPNMPNKAVKQL----A-------I---------------------- 359 (533)
Q Consensus 316 q~i~~SAT~~~~--~~~~~~~~~~~~~-~i~~~~~~~~~~~i~~~----~-------~---------------------- 359 (533)
++|++|||.|+. +..|.++.....+ +++...+..+....... + .
T Consensus 436 ~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~ 515 (1248)
T KOG0947|consen 436 NFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV 515 (1248)
T ss_pred eEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc
Confidence 999999999864 4456665554433 33332332222110000 0 0
Q ss_pred ----------------------------EecchhhH-HHHHHHHHhcc-CCCCCEEEEEcCcccHHHHHHHHHhhc----
Q 009512 360 ----------------------------WVESNKKK-QKLFDILMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTT---- 405 (533)
Q Consensus 360 ----------------------------~~~~~~k~-~~l~~~l~~~~-~~~~~~lIF~~s~~~~~~l~~~l~~~~---- 405 (533)
+.....+. ...++++.... ..--|++|||.|++.|+..+++|. ..
T Consensus 516 ~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~-~~nL~~ 594 (1248)
T KOG0947|consen 516 EKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLT-NLNLTD 594 (1248)
T ss_pred ccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHh-ccCccc
Confidence 00000000 12444443322 122389999999999999999986 11
Q ss_pred -----------------------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 009512 406 -----------------------------------GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 450 (533)
Q Consensus 406 -----------------------------------~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~ 450 (533)
...+.++|||+-+--++-+.-.|..|-++||+||.++++|+|+|.
T Consensus 595 ~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA 674 (1248)
T KOG0947|consen 595 SKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA 674 (1248)
T ss_pred chhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc
Confidence 112458999999999999999999999999999999999999995
Q ss_pred ccEEEEcCCC---------CCHhHHHHhhcccCCCCC--ccEEEEEecCc
Q 009512 451 VRQVIIFDMP---------NSIKEYVHQIGRASQMGD--EGTAIVFVNEE 489 (533)
Q Consensus 451 v~~VI~~~~p---------~s~~~y~qriGR~gR~g~--~g~~~~l~~~~ 489 (533)
++||+-++- -.+-+|.||.|||||.|- .|+++++....
T Consensus 675 -RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 675 -RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred -eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 555553322 257899999999999985 58888877644
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=5.9e-27 Score=263.03 Aligned_cols=310 Identities=13% Similarity=0.156 Sum_probs=199.2
Q ss_pred CCCCHHHHHHHHHHh----C-CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009512 156 DMPTPVQMQAIPSAL----S-GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~----~-g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
..++++|.+|+..+. . .+++|++++||||||.+++. ++..++.. ....++|||+|+++|+.|+.+.+
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~-------~~~~rVLfLvDR~~L~~Qa~~~F 483 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA-------KRFRRILFLVDRSALGEQAEDAF 483 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc-------CccCeEEEEecHHHHHHHHHHHH
Confidence 358999999998876 2 46799999999999987543 33444321 33568999999999999999988
Q ss_pred HHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcC-----CCCCCCeeEEEEeccchhhh-------
Q 009512 231 KLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-----DIELDDIRMFVLDEVDCMLQ------- 298 (533)
Q Consensus 231 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-----~~~l~~i~~vVvDEah~~~~------- 298 (533)
+.+....+.....+++....... .......|+|+|++.|...+... ...+..+++||+||||+...
T Consensus 484 ~~~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~ 561 (1123)
T PRK11448 484 KDTKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSE 561 (1123)
T ss_pred Hhcccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCcccccccc
Confidence 88743211111112221111110 11234789999999997765432 13567899999999999531
Q ss_pred --c------chHHHHHHHHHhCCCCcEEEecccCcHHHHHHHH--------------hhcC---CeEEEEeC--CCCCCC
Q 009512 299 --R------GFRDQVMQIFRAISLPQILMYSATISQEVEKMSS--------------SISK---DIVVVSVG--KPNMPN 351 (533)
Q Consensus 299 --~------~~~~~i~~i~~~~~~~q~i~~SAT~~~~~~~~~~--------------~~~~---~~~~i~~~--~~~~~~ 351 (533)
. .+...+..++..+. ...|+||||+......+.. .++. .|+.+... ..+...
T Consensus 562 ~~~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~ 640 (1123)
T PRK11448 562 GELQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHF 640 (1123)
T ss_pred chhccchhhhHHHHHHHHHhhcC-ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccc
Confidence 0 12466778887763 5789999999643322111 1111 11111110 000000
Q ss_pred cc---ce-------EEE-EEecc---------------hhhHHHHHHHHHhc--cCCCCCEEEEEcCcccHHHHHHHHHh
Q 009512 352 KA---VK-------QLA-IWVES---------------NKKKQKLFDILMSK--QHFTPPAVVYVGSRLGADLLSNAISV 403 (533)
Q Consensus 352 ~~---i~-------~~~-~~~~~---------------~~k~~~l~~~l~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~ 403 (533)
.. +. ... ...+. ......+++.+... ....+++||||.++.+|+.+++.|..
T Consensus 641 ~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 641 EKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred cccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 00 00 000 00000 00011122222111 11236999999999999999988763
Q ss_pred hc-----C---CeEEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccC
Q 009512 404 TT-----G---MKALSIHGEKPMKERREIMRSFLVGEV-PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRAS 474 (533)
Q Consensus 404 ~~-----~---~~~~~ih~~~~~~~r~~~~~~f~~g~~-~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~g 474 (533)
.. + ..+..+||+.+ ++..+++.|+++.. .|+|+++++.+|+|+|.+.+||+++++.|...|+||+||+.
T Consensus 721 ~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgt 798 (1123)
T PRK11448 721 AFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRAT 798 (1123)
T ss_pred HHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhc
Confidence 21 2 24567899886 57789999999887 58999999999999999999999999999999999999999
Q ss_pred CCCC
Q 009512 475 QMGD 478 (533)
Q Consensus 475 R~g~ 478 (533)
|...
T Consensus 799 R~~~ 802 (1123)
T PRK11448 799 RLCP 802 (1123)
T ss_pred cCCc
Confidence 9743
No 98
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=2.3e-27 Score=256.72 Aligned_cols=316 Identities=23% Similarity=0.243 Sum_probs=227.4
Q ss_pred HHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009512 151 EAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 151 ~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
...|| .|.++|++++..+..|.+++++||||||||.++..++...+.+ +.+++|.+|.++|.+|.+..+
T Consensus 114 ~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~----------~qrviYTsPIKALsNQKyrdl 182 (1041)
T COG4581 114 REYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD----------GQRVIYTSPIKALSNQKYRDL 182 (1041)
T ss_pred HhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc----------CCceEeccchhhhhhhHHHHH
Confidence 33455 6889999999999999999999999999999988887766543 455999999999999988776
Q ss_pred HHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHH
Q 009512 231 KLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFR 310 (533)
Q Consensus 231 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~ 310 (533)
....... ...+.+..|+.. +..++.++|+|.+.|.+++.++...+..+..||+||+|.|.+...+..++.++-
T Consensus 183 ~~~fgdv-~~~vGL~TGDv~------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii 255 (1041)
T COG4581 183 LAKFGDV-ADMVGLMTGDVS------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVII 255 (1041)
T ss_pred HHHhhhh-hhhccceeccee------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHH
Confidence 6544332 223333334332 235688999999999999999988899999999999999999988888888888
Q ss_pred hCCCC-cEEEecccCcH--HHHHHHHhhcCCeE-EEEeCCCCCCCccc----eEEEEEecchhh----------------
Q 009512 311 AISLP-QILMYSATISQ--EVEKMSSSISKDIV-VVSVGKPNMPNKAV----KQLAIWVESNKK---------------- 366 (533)
Q Consensus 311 ~~~~~-q~i~~SAT~~~--~~~~~~~~~~~~~~-~i~~~~~~~~~~~i----~~~~~~~~~~~k---------------- 366 (533)
.++.. ++++||||+|+ ++..|....-..+. .+....+..+.... ...+..++...+
T Consensus 256 ~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~ 335 (1041)
T COG4581 256 LLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCF 335 (1041)
T ss_pred hcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhcc
Confidence 88654 99999999975 34455554333333 33333333222100 011111111111
Q ss_pred -------------------------------HHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHh------------
Q 009512 367 -------------------------------KQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISV------------ 403 (533)
Q Consensus 367 -------------------------------~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~------------ 403 (533)
...++..+.. ...-|+|+|+.|+..|+.++..+..
T Consensus 336 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~ 413 (1041)
T COG4581 336 SEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERA 413 (1041)
T ss_pred chhccccCccccccccccccccCCcccccccchHHHhhhhh--hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHH
Confidence 0011111111 1234899999999999888776640
Q ss_pred ---------------hcCCe-------------EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEE
Q 009512 404 ---------------TTGMK-------------ALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVI 455 (533)
Q Consensus 404 ---------------~~~~~-------------~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI 455 (533)
..+++ ...+|+||-...+..+...|..|-++|++||.+++.|+|+|. +.|+
T Consensus 414 i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPa-rtvv 492 (1041)
T COG4581 414 IREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPA-RTVV 492 (1041)
T ss_pred HHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcc-ccee
Confidence 01111 237899999999999999999999999999999999999995 5555
Q ss_pred EcC---------CCCCHhHHHHhhcccCCCCCc--cEEEEEec
Q 009512 456 IFD---------MPNSIKEYVHQIGRASQMGDE--GTAIVFVN 487 (533)
Q Consensus 456 ~~~---------~p~s~~~y~qriGR~gR~g~~--g~~~~l~~ 487 (533)
+.. .+-+..+|.|+.|||||.|.+ |.+++.-.
T Consensus 493 ~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 493 FTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred eeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 543 245789999999999999974 88887743
No 99
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=7.7e-28 Score=245.01 Aligned_cols=308 Identities=21% Similarity=0.223 Sum_probs=223.4
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009512 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
++-|+|.++|..+-.+.++||+|.|.+|||.++.+++...+.+ +.+++|..|-++|.+|-++++..-+++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~----------kQRVIYTSPIKALSNQKYREl~~EF~D 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE----------KQRVIYTSPIKALSNQKYRELLEEFKD 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh----------cCeEEeeChhhhhcchhHHHHHHHhcc
Confidence 6789999999999999999999999999999999888777653 677999999999999988777654443
Q ss_pred CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-CCC
Q 009512 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLP 315 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~~~ 315 (533)
. .+..|..+.. ..+.-+|+|.+.|.+++.++..-+..+..||+||+|.|-|...+-.++.-+-.+ ...
T Consensus 199 V----GLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~v 267 (1041)
T KOG0948|consen 199 V----GLMTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNV 267 (1041)
T ss_pred c----ceeecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccc
Confidence 3 3344443322 346789999999999999988889999999999999998876554444433333 567
Q ss_pred cEEEecccCcHHH--HHHHHhhcCCeEEEEe-CCCCCCCccc------eEEEEEecchh-----hHH-------------
Q 009512 316 QILMYSATISQEV--EKMSSSISKDIVVVSV-GKPNMPNKAV------KQLAIWVESNK-----KKQ------------- 368 (533)
Q Consensus 316 q~i~~SAT~~~~~--~~~~~~~~~~~~~i~~-~~~~~~~~~i------~~~~~~~~~~~-----k~~------------- 368 (533)
+.+++|||+|+.. .+|...+-..|..+.. ..+..+.... .-++..+++.. ...
T Consensus 268 r~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~ 347 (1041)
T KOG0948|consen 268 RFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESD 347 (1041)
T ss_pred eEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCc
Confidence 8999999999754 4455555555543332 2222221111 01122222221 111
Q ss_pred -------------------------HHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcC-----------------
Q 009512 369 -------------------------KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTG----------------- 406 (533)
Q Consensus 369 -------------------------~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~----------------- 406 (533)
+++..+.. ....|+|||+.|+++|+.+|-.+. ...
T Consensus 348 ~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~--~~~~PVIvFSFSkkeCE~~Alqm~-kldfN~deEk~~V~~iF~nA 424 (1041)
T KOG0948|consen 348 GKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME--RNYLPVIVFSFSKKECEAYALQMS-KLDFNTDEEKELVETIFNNA 424 (1041)
T ss_pred cccccccccccCCcCCCCCCcccHHHHHHHHHh--hcCCceEEEEecHhHHHHHHHhhc-cCcCCChhHHHHHHHHHHHH
Confidence 22222222 112489999999999999987765 111
Q ss_pred ----------------------CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEE-----cCC
Q 009512 407 ----------------------MKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII-----FDM 459 (533)
Q Consensus 407 ----------------------~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~-----~~~ 459 (533)
..+..+|+|+-+--++.+.-.|.+|-+++|+||.+++.|+|+|. ++|++ ||-
T Consensus 425 i~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA-kTVvFT~~rKfDG 503 (1041)
T KOG0948|consen 425 IDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA-KTVVFTAVRKFDG 503 (1041)
T ss_pred HHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc-eeEEEeeccccCC
Confidence 11448999999999999999999999999999999999999995 55555 332
Q ss_pred ----CCCHhHHHHhhcccCCCCC--ccEEEEEecCc
Q 009512 460 ----PNSIKEYVHQIGRASQMGD--EGTAIVFVNEE 489 (533)
Q Consensus 460 ----p~s~~~y~qriGR~gR~g~--~g~~~~l~~~~ 489 (533)
.-|.-+|+||.|||||.|- .|.+++++++.
T Consensus 504 ~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 504 KKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 2477899999999999986 58999998864
No 100
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=1.4e-26 Score=247.18 Aligned_cols=315 Identities=18% Similarity=0.208 Sum_probs=233.3
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009512 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.|+++|.-.--.+..|+ |+.++||.|||++|.+|++..++. +..+.||+|++.||.|..+|+..+...
T Consensus 82 ~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~----------g~~VhIvT~ndyLA~RD~e~m~~l~~~ 149 (908)
T PRK13107 82 RHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT----------GKGVHVITVNDYLARRDAENNRPLFEF 149 (908)
T ss_pred CcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc----------CCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 67788887666666665 899999999999999999877654 344999999999999999999999999
Q ss_pred CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcC-CCCC-----CCeeEEEEeccchhhhcc---------
Q 009512 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH-DIEL-----DDIRMFVLDEVDCMLQRG--------- 300 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~-~~~l-----~~i~~vVvDEah~~~~~~--------- 300 (533)
+|+++.++.++.+.... .-.-+++|+++||+.| .++++.+ .... ..+.++||||+|.++-..
T Consensus 150 lGlsv~~i~~~~~~~~r--~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg 227 (908)
T PRK13107 150 LGLTVGINVAGLGQQEK--KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISG 227 (908)
T ss_pred cCCeEEEecCCCCHHHH--HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecC
Confidence 99999999998775432 1122689999999999 8888765 3333 678999999999876210
Q ss_pred -------hHHHHHHHHHhCC--------------------CC--------------------------------------
Q 009512 301 -------FRDQVMQIFRAIS--------------------LP-------------------------------------- 315 (533)
Q Consensus 301 -------~~~~i~~i~~~~~--------------------~~-------------------------------------- 315 (533)
....+..+...+. ..
T Consensus 228 ~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~ 307 (908)
T PRK13107 228 AAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLL 307 (908)
T ss_pred CCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHH
Confidence 1111111111110 11
Q ss_pred ------------------------------------------------------------------------------cE
Q 009512 316 ------------------------------------------------------------------------------QI 317 (533)
Q Consensus 316 ------------------------------------------------------------------------------q~ 317 (533)
++
T Consensus 308 ~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL 387 (908)
T PRK13107 308 HHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKL 387 (908)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHh
Confidence 12
Q ss_pred EEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccc-eEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHH
Q 009512 318 LMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAV-KQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADL 396 (533)
Q Consensus 318 i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~ 396 (533)
-+||+|...+..++...+..+.+.+.... +.... .....+.....|...+++.+......+.|+||||.|...++.
T Consensus 388 ~GMTGTa~te~~Ef~~iY~l~Vv~IPTnk---p~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ 464 (908)
T PRK13107 388 AGMTGTADTEAFEFQHIYGLDTVVVPTNR---PMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSEL 464 (908)
T ss_pred hcccCCChHHHHHHHHHhCCCEEECCCCC---CccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHH
Confidence 22333333323333333333332222111 11000 112334556778888888877777778899999999999999
Q ss_pred HHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC--------------------------
Q 009512 397 LSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG-------------------------- 450 (533)
Q Consensus 397 l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~-------------------------- 450 (533)
++..|. ..++++..+|+.+.+.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 465 ls~~L~-~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~ 541 (908)
T PRK13107 465 LARLMV-KEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADW 541 (908)
T ss_pred HHHHHH-HCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHH
Confidence 999998 78999999999999999999999999999 9999999999999862
Q ss_pred -----------ccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009512 451 -----------VRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 451 -----------v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
==+||-...+.|-.--.|-.||+||.|.+|.+-.|++-+|.
T Consensus 542 ~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 542 QIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 12788888999999999999999999999999999987664
No 101
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.95 E-value=5.5e-26 Score=206.26 Aligned_cols=164 Identities=31% Similarity=0.536 Sum_probs=142.1
Q ss_pred CHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCC
Q 009512 159 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP 238 (533)
Q Consensus 159 ~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~ 238 (533)
||+|.++++.+.+|+++++.||||+|||++++++++..+.. ....+++|++|+++|+.|+.+.+..++...+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~--------~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~ 72 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQE--------GKDARVLIIVPTRALAEQQFERLRKFFSNTN 72 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHT--------TSSSEEEEEESSHHHHHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhcc--------CCCceEEEEeecccccccccccccccccccc
Confidence 69999999999999999999999999999999999988875 2335899999999999999999999988877
Q ss_pred CeEEEEEcCCchH-HHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC---CC
Q 009512 239 FKTALVVGGDAMA-RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI---SL 314 (533)
Q Consensus 239 ~~~~~~~gg~~~~-~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~---~~ 314 (533)
.++..++++.... .....+..+++|+|+||++|.+.+......+.++++||+||+|.+....+...+..++..+ ..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~ 152 (169)
T PF00270_consen 73 VRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKN 152 (169)
T ss_dssp SSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTT
T ss_pred cccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCC
Confidence 8999999988765 3334455679999999999999999866677889999999999999888888888888877 46
Q ss_pred CcEEEecccCcHHHHH
Q 009512 315 PQILMYSATISQEVEK 330 (533)
Q Consensus 315 ~q~i~~SAT~~~~~~~ 330 (533)
.+++++|||++..+++
T Consensus 153 ~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 153 IQIILLSATLPSNVEK 168 (169)
T ss_dssp SEEEEEESSSTHHHHH
T ss_pred CcEEEEeeCCChhHhh
Confidence 8999999999976654
No 102
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.94 E-value=2.2e-25 Score=245.87 Aligned_cols=318 Identities=15% Similarity=0.146 Sum_probs=217.9
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~----~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.++|||.+++..+. .|.+.|++..+|.|||+..+. ++.++... .+....+|||||. .+..||..++.+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~------~~~~gp~LIVvP~-SlL~nW~~Ei~k 240 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEY------RGITGPHMVVAPK-STLGNWMNEIRR 240 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHh------cCCCCCEEEEeCh-HHHHHHHHHHHH
Confidence 67899999999875 678899999999999987543 34444321 1234458999998 555889999999
Q ss_pred HhcCCCCeEEEEEcCCchHHHHHH--H-HcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHH
Q 009512 233 LGKGLPFKTALVVGGDAMARQVYR--I-QQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIF 309 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~--l-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~ 309 (533)
+... ++++.+.|.......... + ....+|+|+|++.+...... +.--.+++||+||||++-+. .......+
T Consensus 241 w~p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~--L~k~~W~~VIvDEAHrIKN~--~Sklskal 314 (1033)
T PLN03142 241 FCPV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA--LKRFSWRYIIIDEAHRIKNE--NSLLSKTM 314 (1033)
T ss_pred HCCC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH--hccCCCCEEEEcCccccCCH--HHHHHHHH
Confidence 8753 455555554332222111 1 23578999999998654322 22235789999999998653 45566667
Q ss_pred HhCCCCcEEEecccCcH----HHHHHHHhh-------------------------------------------------c
Q 009512 310 RAISLPQILMYSATISQ----EVEKMSSSI-------------------------------------------------S 336 (533)
Q Consensus 310 ~~~~~~q~i~~SAT~~~----~~~~~~~~~-------------------------------------------------~ 336 (533)
..+.....+++|||+-. ++-.++..+ +
T Consensus 315 r~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~L 394 (1033)
T PLN03142 315 RLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGL 394 (1033)
T ss_pred HHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhC
Confidence 77777788999999621 110000000 0
Q ss_pred CCe--EEEEeCCCC--------------------CCC--------------------------ccceEEEEEecchhhHH
Q 009512 337 KDI--VVVSVGKPN--------------------MPN--------------------------KAVKQLAIWVESNKKKQ 368 (533)
Q Consensus 337 ~~~--~~i~~~~~~--------------------~~~--------------------------~~i~~~~~~~~~~~k~~ 368 (533)
... ..+.+.-.. ... .........+....|..
T Consensus 395 PpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~ 474 (1033)
T PLN03142 395 PPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMV 474 (1033)
T ss_pred CCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHH
Confidence 000 001000000 000 00000000112234555
Q ss_pred HHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC---CCcEEEEecccccc
Q 009512 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG---EVPVIVATGILGRG 445 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g---~~~VLvaT~~~~~G 445 (533)
.|..++......+.++|||+......+.|..+|. ..++....+||+++..+|..+++.|++. ..-+|++|.+++.|
T Consensus 475 lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~-~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlG 553 (1033)
T PLN03142 475 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLM-YRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLG 553 (1033)
T ss_pred HHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHH-HcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccC
Confidence 6666666666677899999999999999999998 7899999999999999999999999863 34578999999999
Q ss_pred CCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEE--EEecCc
Q 009512 446 VELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAI--VFVNEE 489 (533)
Q Consensus 446 ldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~--~l~~~~ 489 (533)
||+..+++||+||+|+++....|++||+.|.|+...+. .|+...
T Consensus 554 INLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 554 INLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred CchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 99999999999999999999999999999999976544 444443
No 103
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.92 E-value=6.2e-24 Score=228.94 Aligned_cols=309 Identities=17% Similarity=0.202 Sum_probs=217.6
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHH-HHHhcCCC
Q 009512 160 PVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA-KLLGKGLP 238 (533)
Q Consensus 160 ~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~-~~~~~~~~ 238 (533)
....+.+.++....-++|.|+||||||+ .+|.+.. +..+ ..+..+.+.-|+|--|..+.+.+ .++....|
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~ll--e~g~-----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G 123 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFLL--EEGL-----GIAGKIGCTQPRRLAARSVAERVAEELGEKLG 123 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHH--hhhc-----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcC
Confidence 3455566677788889999999999998 4554432 1111 34567888899997777766544 44444445
Q ss_pred CeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccch-hhhcchH-HHHHHHHHhCC-CC
Q 009512 239 FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC-MLQRGFR-DQVMQIFRAIS-LP 315 (533)
Q Consensus 239 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~-~~~~~~~-~~i~~i~~~~~-~~ 315 (533)
-.+.+..-.++.. .....|-++|.|.|+..+..+.. |+.+++||+||+|+ .++-++. ..+..++...+ +.
T Consensus 124 ~~VGY~iRfe~~~------s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 124 ETVGYSIRFESKV------SPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred ceeeEEEEeeccC------CCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence 4444443333321 24578999999999999988775 99999999999995 3333333 23334455555 68
Q ss_pred cEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEE-ecchh-hHHHHHHHHHhc-cCCCCCEEEEEcCcc
Q 009512 316 QILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIW-VESNK-KKQKLFDILMSK-QHFTPPAVVYVGSRL 392 (533)
Q Consensus 316 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~-~~~~~-k~~~l~~~l~~~-~~~~~~~lIF~~s~~ 392 (533)
++|.||||+.. +++...+..-|+... .....+. ...+.. ..... -...+...+... ....+.+|||.+...
T Consensus 197 KiIimSATld~--~rfs~~f~~apvi~i-~GR~fPV---ei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 197 KLIIMSATLDA--ERFSAYFGNAPVIEI-EGRTYPV---EIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred eEEEEecccCH--HHHHHHcCCCCEEEe-cCCccce---EEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 99999999985 555555554444333 3333332 222211 11122 233344444332 234678999999999
Q ss_pred cHHHHHHHHHh-hc--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcC-----------
Q 009512 393 GADLLSNAISV-TT--GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD----------- 458 (533)
Q Consensus 393 ~~~~l~~~l~~-~~--~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~----------- 458 (533)
+.+.+++.|.. .. ...+..+||.++.+++..+++--..|..+|++||++++.+|.|+++++||+-+
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~ 350 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRT 350 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccccc
Confidence 99999999984 23 47889999999999999999888888888999999999999999999999844
Q ss_pred -------CCCCHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009512 459 -------MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 459 -------~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
.|-|-.+..||.|||||. .+|.||-++++++.
T Consensus 351 g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~ 389 (845)
T COG1643 351 GLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDF 389 (845)
T ss_pred CceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHH
Confidence 245788899999999998 58999999997543
No 104
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.92 E-value=1.6e-23 Score=213.58 Aligned_cols=310 Identities=17% Similarity=0.217 Sum_probs=217.4
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHH-HHHHhcCCC
Q 009512 160 PVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ-AKLLGKGLP 238 (533)
Q Consensus 160 ~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~-~~~~~~~~~ 238 (533)
.+-.+.+..+..++-++|.|+||||||+ .+|-+-. +..+ ...+++.+..|+|.-|..++.. +.+..-.+|
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKST--QipQyL~--eaG~-----~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG 124 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKST--QIPQYLA--EAGF-----ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLG 124 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHH--hccc-----ccCCcEEeecCchHHHHHHHHHHHHHhCCCcC
Confidence 3445677777788899999999999998 5554322 2111 2233488889999988876553 444444444
Q ss_pred CeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhh--hcchHHHHHHHHHhCCCCc
Q 009512 239 FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML--QRGFRDQVMQIFRAISLPQ 316 (533)
Q Consensus 239 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~--~~~~~~~i~~i~~~~~~~q 316 (533)
-.+....-=++.. .+...|.+.|.|.|++.+..+. .|+.+++||+||||.=. ..-....+..++++.++.+
T Consensus 125 ~~VGY~IRFed~t------s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 125 EEVGYTIRFEDST------SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred ceeeeEEEecccC------CCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCce
Confidence 3443322211111 1347899999999999988776 48999999999999521 1112344555666668889
Q ss_pred EEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhc--cCCCCCEEEEEcCcccH
Q 009512 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSK--QHFTPPAVVYVGSRLGA 394 (533)
Q Consensus 317 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~--~~~~~~~lIF~~s~~~~ 394 (533)
+|.+|||+.. +.+...|..-++.. +..+..+ ++..+...+..+.....+..+.+. ....+-+|||.+.+++.
T Consensus 198 lIimSATlda--~kfS~yF~~a~i~~-i~GR~fP---Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEI 271 (674)
T KOG0922|consen 198 LIIMSATLDA--EKFSEYFNNAPILT-IPGRTFP---VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEI 271 (674)
T ss_pred EEEEeeeecH--HHHHHHhcCCceEe-ecCCCCc---eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHH
Confidence 9999999984 45555555545443 3333333 333444444444444443333221 23445799999999999
Q ss_pred HHHHHHHHhhcCC-------eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcC---------
Q 009512 395 DLLSNAISVTTGM-------KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD--------- 458 (533)
Q Consensus 395 ~~l~~~l~~~~~~-------~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~--------- 458 (533)
+.+++.|.+..+. -+..+||.++.+++.++++.-..|..+|++||++++..+.|+++.+||+-+
T Consensus 272 e~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p 351 (674)
T KOG0922|consen 272 EAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNP 351 (674)
T ss_pred HHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecc
Confidence 9999998743221 246799999999999999988889999999999999999999999999844
Q ss_pred ---------CCCCHhHHHHhhcccCCCCCccEEEEEecCcCHH
Q 009512 459 ---------MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKN 492 (533)
Q Consensus 459 ---------~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~ 492 (533)
.|-|...-.||.|||||. .+|.|+-++++++..
T Consensus 352 ~~g~~~L~v~~ISkasA~QRaGRAGRt-~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 352 RTGLDSLIVVPISKASANQRAGRAGRT-GPGKCYRLYTESAYD 393 (674)
T ss_pred ccCccceeEEechHHHHhhhcccCCCC-CCceEEEeeeHHHHh
Confidence 356889999999999998 589999999987653
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=9.1e-23 Score=223.66 Aligned_cols=323 Identities=20% Similarity=0.217 Sum_probs=214.3
Q ss_pred CCHHHHHHHHHHhC---CC-cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009512 158 PTPVQMQAIPSALS---GK-SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 158 p~~~Q~~~i~~i~~---g~-~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.++.|..++..+.. .. .+++.||||+|||.+.+.+++..+... .....+++++.|++.+++++++.++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~------~~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK------IKLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc------ccccceEEEEccHHHHHHHHHHHHHhh
Confidence 48999999988873 23 688999999999999998888766541 125788999999999999999999887
Q ss_pred hcCCCCeEEEEEcCCchHHHHHHH---------------HcCCceeecChHHHHHHHHcC-CCC-C--CCeeEEEEeccc
Q 009512 234 GKGLPFKTALVVGGDAMARQVYRI---------------QQGVELIVGTPGRLIDLLMKH-DIE-L--DDIRMFVLDEVD 294 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l---------------~~~~~Iiv~Tp~~l~~~l~~~-~~~-l--~~i~~vVvDEah 294 (533)
............| .......... .....++++||-......... ... + -..+++|+||+|
T Consensus 270 ~~~~~~~~~~~h~-~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 270 FGLFSVIGKSLHS-SSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred hcccccccccccc-cccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 6543322221122 2211111000 011345566665554422221 111 1 124689999999
Q ss_pred hhhhcchHHHHHHHHHhC--CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCC---CccceEE-EEEecchhhHH
Q 009512 295 CMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMP---NKAVKQL-AIWVESNKKKQ 368 (533)
Q Consensus 295 ~~~~~~~~~~i~~i~~~~--~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~i~~~-~~~~~~~~k~~ 368 (533)
.+.+......+..++..+ ....+|++|||+|....+...........+.......+ ...+.+. ......... .
T Consensus 349 ~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-~ 427 (733)
T COG1203 349 LYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQ-E 427 (733)
T ss_pred hhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhh-H
Confidence 887764344444444444 47899999999999998888777665444433221110 0011100 000100100 1
Q ss_pred HHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHh----cCCCcEEEEeccccc
Q 009512 369 KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFL----VGEVPVIVATGILGR 444 (533)
Q Consensus 369 ~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~----~g~~~VLvaT~~~~~ 444 (533)
.+..........+.+++|.|||...|..++..|+.... .+..+||.+...+|.+.++.+. .+...|+|||++++.
T Consensus 428 ~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEa 506 (733)
T COG1203 428 ELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP-KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEA 506 (733)
T ss_pred hhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC-CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEE
Confidence 23334444455678999999999999999999984433 7999999999999998888665 468889999999999
Q ss_pred cCCCCCccEEEEcCCCCCHhHHHHhhcccCCCC--CccEEEEEecCcCHH
Q 009512 445 GVELLGVRQVIIFDMPNSIKEYVHQIGRASQMG--DEGTAIVFVNEENKN 492 (533)
Q Consensus 445 Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g--~~g~~~~l~~~~~~~ 492 (533)
|+|+. .+.+|- -+..++..+||+||++|.| ..|.++++......+
T Consensus 507 gvDid-fd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~ 553 (733)
T COG1203 507 GVDID-FDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGP 553 (733)
T ss_pred Eeccc-cCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeecccCCC
Confidence 99975 566554 3344899999999999999 578888887655433
No 106
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=1.8e-22 Score=216.55 Aligned_cols=145 Identities=19% Similarity=0.283 Sum_probs=123.6
Q ss_pred EEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q 009512 359 IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVA 438 (533)
Q Consensus 359 ~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLva 438 (533)
.+.....|...+.+.+......+.|+||||+|+..++.|+..|. ..++++..+|+ .+.+|+..+..|..+...|+||
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~-~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIA 652 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLR-AKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIA 652 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHH-HcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEe
Confidence 34455678888888887766678899999999999999999998 78999999997 5789999999999999999999
Q ss_pred eccccccCCCC---Ccc-----EEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHH--H--HHHHHHHHhcCC
Q 009512 439 TGILGRGVELL---GVR-----QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNL--F--QELVDILKSSGA 506 (533)
Q Consensus 439 T~~~~~Gldi~---~v~-----~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~--~--~~l~~~l~~~~~ 506 (533)
|++++||+||+ .|. +||++..|.|...|.|++||+||.|.+|.+.+|++.+|.-+ + ..+.++++..+.
T Consensus 653 TNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~Lmr~f~~~~i~~~~~~~~~ 732 (1025)
T PRK12900 653 TNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDELMRLFGSDRVISVMDRLGH 732 (1025)
T ss_pred ccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHHHHhhCcHHHHHHHHHcCC
Confidence 99999999999 453 45899999999999999999999999999999999876432 1 246666666554
No 107
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.91 E-value=4.5e-22 Score=210.41 Aligned_cols=287 Identities=22% Similarity=0.334 Sum_probs=199.4
Q ss_pred HHHHHHHHc-CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHH
Q 009512 145 KLLQNIEAA-GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELC 223 (533)
Q Consensus 145 ~l~~~l~~~-g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~ 223 (533)
.+.+.+++. || .|+..|.-....+..|++.-+.||||.|||+ |.+.+-..+. .++.+++|++||..|+
T Consensus 70 ~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a---------~kgkr~yii~PT~~Lv 138 (1187)
T COG1110 70 EFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLA---------KKGKRVYIIVPTTTLV 138 (1187)
T ss_pred HHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHH---------hcCCeEEEEecCHHHH
Confidence 334455555 55 9999999999999999999999999999997 4433332322 3568899999999999
Q ss_pred HHHHHHHHHHhcCCC-CeEEEEEcCCc----hHHHHHHHHc-CCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009512 224 IQVEEQAKLLGKGLP-FKTALVVGGDA----MARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 224 ~Q~~~~~~~~~~~~~-~~~~~~~gg~~----~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
.|+.+.++.++...+ ..+..++.+.- ......++.+ +.+|+|+|.+-|..-+..- .--++++|++|++|.++
T Consensus 139 ~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 139 RQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred HHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHH
Confidence 999999999987666 44444455542 2233445555 4999999977665444321 11368899999999876
Q ss_pred hc-----------chHHH-------HHHHH-------------------------HhCCCCcEEEecccCcHH--HHHHH
Q 009512 298 QR-----------GFRDQ-------VMQIF-------------------------RAISLPQILMYSATISQE--VEKMS 332 (533)
Q Consensus 298 ~~-----------~~~~~-------i~~i~-------------------------~~~~~~q~i~~SAT~~~~--~~~~~ 332 (533)
.. ||... +..+. ++.+..+++..|||..+. -..+.
T Consensus 217 kaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~Lf 296 (1187)
T COG1110 217 KASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLF 296 (1187)
T ss_pred hccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHH
Confidence 32 12211 11111 111446788999998432 12233
Q ss_pred HhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcC---cccHHHHHHHHHhhcCCeE
Q 009512 333 SSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGS---RLGADLLSNAISVTTGMKA 409 (533)
Q Consensus 333 ~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s---~~~~~~l~~~l~~~~~~~~ 409 (533)
+.+ ..+.++.......++...+... .-..++.+++.... .-.|||++. ++.++.++++|+ ..|+.+
T Consensus 297 ReL----lgFevG~~~~~LRNIvD~y~~~---~~~e~~~elvk~lG---~GgLIfV~~d~G~e~aeel~e~Lr-~~Gi~a 365 (1187)
T COG1110 297 REL----LGFEVGSGGEGLRNIVDIYVES---ESLEKVVELVKKLG---DGGLIFVPIDYGREKAEELAEYLR-SHGINA 365 (1187)
T ss_pred HHH----hCCccCccchhhhheeeeeccC---ccHHHHHHHHHHhC---CCeEEEEEcHHhHHHHHHHHHHHH-hcCceE
Confidence 333 3344555444555555555444 33444555554433 358999999 899999999998 899999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCcEEEEec----cccccCCCCC-ccEEEEcCCC
Q 009512 410 LSIHGEKPMKERREIMRSFLVGEVPVIVATG----ILGRGVELLG-VRQVIIFDMP 460 (533)
Q Consensus 410 ~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~----~~~~Gldi~~-v~~VI~~~~p 460 (533)
..+|+. ....++.|..|+++|||.+. ++-||||+|. ++++|+++.|
T Consensus 366 ~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 366 ELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred EEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 999984 36789999999999998764 7899999996 7899998766
No 108
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.91 E-value=1.8e-21 Score=208.87 Aligned_cols=135 Identities=23% Similarity=0.367 Sum_probs=120.2
Q ss_pred hhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q 009512 364 NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILG 443 (533)
Q Consensus 364 ~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~ 443 (533)
..+...+++.+......+.++||||+++..++.|++.|. ..|+++..+||++++.+|..+++.|+.|++.|||||++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~-~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~ 503 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLK-ELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR 503 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHh-hhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc
Confidence 345667777777766777899999999999999999998 7799999999999999999999999999999999999999
Q ss_pred ccCCCCCccEEEEcC-----CCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHHHHH
Q 009512 444 RGVELLGVRQVIIFD-----MPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQELVDI 500 (533)
Q Consensus 444 ~Gldi~~v~~VI~~~-----~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l~~~ 500 (533)
+|+|+|++++||++| .|.+...|+||+||+||. ..|.+++|.+..+..+...+.+.
T Consensus 504 rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 504 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred CCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 999999999999988 799999999999999998 68999999998766555444443
No 109
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.90 E-value=5.3e-22 Score=203.59 Aligned_cols=315 Identities=15% Similarity=0.207 Sum_probs=226.1
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~----~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.++++|.+.++++. .|-+.|+...+|-|||+. .+.++.++...+ +-.+..||++|...| ..|.+++++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~------~~~GPfLVi~P~StL-~NW~~Ef~r 238 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK------GIPGPFLVIAPKSTL-DNWMNEFKR 238 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc------CCCCCeEEEeeHhhH-HHHHHHHHH
Confidence 68999999999876 678899999999999986 345555554421 323448999999998 558899999
Q ss_pred HhcCCCCeEEEEEcCCchHHHHHH-H--HcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHH
Q 009512 233 LGKGLPFKTALVVGGDAMARQVYR-I--QQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIF 309 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~-l--~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~ 309 (533)
|... ++++.++|.......+.+ + ....+|+|+|++..+.-- ..+.--..+|+||||||++-+. ...+..++
T Consensus 239 f~P~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~l 312 (971)
T KOG0385|consen 239 FTPS--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNE--KSKLSKIL 312 (971)
T ss_pred hCCC--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcch--hhHHHHHH
Confidence 9864 577777776543332221 1 235899999999886542 1222235689999999999765 46667888
Q ss_pred HhCCCCcEEEecccCcH----------------------HHHH-------------------------------------
Q 009512 310 RAISLPQILMYSATISQ----------------------EVEK------------------------------------- 330 (533)
Q Consensus 310 ~~~~~~q~i~~SAT~~~----------------------~~~~------------------------------------- 330 (533)
+.+.....+++|+|+-. .+..
T Consensus 313 r~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sL 392 (971)
T KOG0385|consen 313 REFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSL 392 (971)
T ss_pred HHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcC
Confidence 88888888999999310 0000
Q ss_pred -----------------------------------------------HHHhhcCCeEEEEeCCCCCCCccceEEEEEecc
Q 009512 331 -----------------------------------------------MSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES 363 (533)
Q Consensus 331 -----------------------------------------------~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~ 363 (533)
..+....+|.-+...++..+... .-..+..
T Consensus 393 ppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pytt---dehLv~n 469 (971)
T KOG0385|consen 393 PPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTT---DEHLVTN 469 (971)
T ss_pred CCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCc---chHHHhc
Confidence 00011111211111111111111 1112334
Q ss_pred hhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCC---CcEEEEec
Q 009512 364 NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE---VPVIVATG 440 (533)
Q Consensus 364 ~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~---~~VLvaT~ 440 (533)
..|...|-.+|......+.+||||.......+-|..+.- ..++....+.|.++.++|...++.|.... .-+|++|.
T Consensus 470 SGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~-~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCM-LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred CcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHH-hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 455556666666667778899999999999999999887 78999999999999999999999999854 33589999
Q ss_pred cccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEE--EecCc
Q 009512 441 ILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV--FVNEE 489 (533)
Q Consensus 441 ~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~--l~~~~ 489 (533)
..+-|||+..+++||.||..|++..-+|..-||.|.|+...+.+ |++.+
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 99999999999999999999999999999999999999765544 45544
No 110
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.90 E-value=3.6e-21 Score=215.34 Aligned_cols=346 Identities=18% Similarity=0.266 Sum_probs=220.2
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEc
Q 009512 142 LSQKLLQNIEAAGYDMPTPVQMQAIPS----ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 217 (533)
Q Consensus 142 l~~~l~~~l~~~g~~~p~~~Q~~~i~~----i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~ 217 (533)
+++.+...+...||. ++|.|.+++.. +..++++++.||||+|||++|++|++.++. .+.+++|.+
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~----------~~~~vvi~t 299 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI----------TEKPVVIST 299 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc----------CCCeEEEEe
Confidence 344667777778886 88999987764 447889999999999999999999987643 235799999
Q ss_pred ccHHHHHHHHH-HHHHHhcCCC--CeEEEEEcCCchH-------------------------------------------
Q 009512 218 PTRELCIQVEE-QAKLLGKGLP--FKTALVVGGDAMA------------------------------------------- 251 (533)
Q Consensus 218 Ptr~L~~Q~~~-~~~~~~~~~~--~~~~~~~gg~~~~------------------------------------------- 251 (533)
||++|..|+.. .+..+.+.++ ++++.+.|+...-
T Consensus 300 ~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~ 379 (850)
T TIGR01407 300 NTKVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLK 379 (850)
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCC
Confidence 99999999754 6666665444 6777777643210
Q ss_pred -------H---------------------HHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcc---
Q 009512 252 -------R---------------------QVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG--- 300 (533)
Q Consensus 252 -------~---------------------~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~--- 300 (533)
. ...+....++|||+....|++-+.....-+....++||||||++.+..
T Consensus 380 ~~~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~ 459 (850)
T TIGR01407 380 GGNKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQ 459 (850)
T ss_pred CcchhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHH
Confidence 0 000111235699999998877765543345667899999999975310
Q ss_pred ---------hHHH----------------------------------------------------------------HHH
Q 009512 301 ---------FRDQ----------------------------------------------------------------VMQ 307 (533)
Q Consensus 301 ---------~~~~----------------------------------------------------------------i~~ 307 (533)
+... +..
T Consensus 460 ~~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 539 (850)
T TIGR01407 460 LQEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRK 539 (850)
T ss_pred hcceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 0000 000
Q ss_pred HHHh--------------------------------C-----------------CCCcEEEecccCcH--HHHHHHHhhc
Q 009512 308 IFRA--------------------------------I-----------------SLPQILMYSATISQ--EVEKMSSSIS 336 (533)
Q Consensus 308 i~~~--------------------------------~-----------------~~~q~i~~SAT~~~--~~~~~~~~~~ 336 (533)
.+.. + ....+|++|||+.. ....+...+.
T Consensus 540 ~~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lG 619 (850)
T TIGR01407 540 FDLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLG 619 (850)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcC
Confidence 0000 0 11257889999862 2343433333
Q ss_pred CC-eEEEEeCCCCCCCccceEEEEEe----------cchhhHHHHHHHHHhc-cCCCCCEEEEEcCcccHHHHHHHHHh-
Q 009512 337 KD-IVVVSVGKPNMPNKAVKQLAIWV----------ESNKKKQKLFDILMSK-QHFTPPAVVYVGSRLGADLLSNAISV- 403 (533)
Q Consensus 337 ~~-~~~i~~~~~~~~~~~i~~~~~~~----------~~~~k~~~l~~~l~~~-~~~~~~~lIF~~s~~~~~~l~~~l~~- 403 (533)
-+ ....... ..+.....+...++ ........+.+.+... ....+++|||++|....+.++..|..
T Consensus 620 l~~~~~~~~~--~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~ 697 (850)
T TIGR01407 620 LTDVHFNTIE--PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNEL 697 (850)
T ss_pred CCccccceec--CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhh
Confidence 22 2111111 11111111111111 1122233444444332 22346899999999999999999873
Q ss_pred --hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCcc--EEEEcCCCC------------------
Q 009512 404 --TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVR--QVIIFDMPN------------------ 461 (533)
Q Consensus 404 --~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~--~VI~~~~p~------------------ 461 (533)
..++.+ +..+.. ..|..+++.|++|+..||++|+.+++|||+|+.. .||+..+|.
T Consensus 698 ~~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~ 774 (850)
T TIGR01407 698 PEFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQE 774 (850)
T ss_pred ccccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHh
Confidence 123343 333333 4789999999999999999999999999999865 566655542
Q ss_pred ------------CHhHHHHhhcccCCCCCccEEEEEecCc--CHHHHHHHHHHHHh
Q 009512 462 ------------SIKEYVHQIGRASQMGDEGTAIVFVNEE--NKNLFQELVDILKS 503 (533)
Q Consensus 462 ------------s~~~y~qriGR~gR~g~~g~~~~l~~~~--~~~~~~~l~~~l~~ 503 (533)
.+..+.|.+||+-|...+.-++++++.. .+.+-+.|.+.|..
T Consensus 775 g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp~ 830 (850)
T TIGR01407 775 GKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLPE 830 (850)
T ss_pred cCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCCC
Confidence 2234578999999987665567777765 66677888877754
No 111
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.90 E-value=7.3e-22 Score=199.46 Aligned_cols=310 Identities=18% Similarity=0.195 Sum_probs=219.1
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHH-HHHHHhc
Q 009512 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE-QAKLLGK 235 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~-~~~~~~~ 235 (533)
.-+++-.+.+.++...+-++|.|.||||||+ .+|-+-+=.. -...+.++-+..|+|.-|..+.. .+.+++.
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaG------ytk~gk~IgcTQPRRVAAmSVAaRVA~EMgv 336 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAG------YTKGGKKIGCTQPRRVAAMSVAARVAEEMGV 336 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcc------cccCCceEeecCcchHHHHHHHHHHHHHhCc
Confidence 4467788889999999999999999999998 6776543221 11344558888899999998654 4445544
Q ss_pred CCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhh-h-cchHHHHHHHHHhCC
Q 009512 236 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML-Q-RGFRDQVMQIFRAIS 313 (533)
Q Consensus 236 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~-~-~~~~~~i~~i~~~~~ 313 (533)
.+|-.+..-.--.+ ......-|-++|.|+|++-+.... .|.++++||+||||.-- . .-.-..+..|...-+
T Consensus 337 kLG~eVGYsIRFEd------cTSekTvlKYMTDGmLlREfL~ep-dLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp 409 (902)
T KOG0923|consen 337 KLGHEVGYSIRFED------CTSEKTVLKYMTDGMLLREFLSEP-DLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP 409 (902)
T ss_pred ccccccceEEEecc------ccCcceeeeeecchhHHHHHhccc-cccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC
Confidence 44322222111111 111224566999999998887654 58999999999999521 1 112234555555558
Q ss_pred CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhc--cCCCCCEEEEEcCc
Q 009512 314 LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSK--QHFTPPAVVYVGSR 391 (533)
Q Consensus 314 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~--~~~~~~~lIF~~s~ 391 (533)
+.+++..|||+.. +++...|..-|++...+.+. + +..++...++.+..+..+..+... ....+-+|||....
T Consensus 410 dLKllIsSAT~DA--ekFS~fFDdapIF~iPGRRy-P---Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQ 483 (902)
T KOG0923|consen 410 DLKLLISSATMDA--EKFSAFFDDAPIFRIPGRRY-P---VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQ 483 (902)
T ss_pred cceEEeeccccCH--HHHHHhccCCcEEeccCccc-c---eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccH
Confidence 8999999999985 55555555556655544432 2 333444455555655554444332 23346799999999
Q ss_pred ccHHHHHHHHHh---hc-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcC-----
Q 009512 392 LGADLLSNAISV---TT-----GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD----- 458 (533)
Q Consensus 392 ~~~~~l~~~l~~---~~-----~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~----- 458 (533)
++.+.....|.. .. .+-+..+|+.++++.+..|++--..|..+|++||++++..|.|+++.+||+-+
T Consensus 484 eEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~n 563 (902)
T KOG0923|consen 484 EEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQN 563 (902)
T ss_pred HHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCcccccc
Confidence 998888777742 22 34477899999999999999999999999999999999999999999999843
Q ss_pred -------------CCCCHhHHHHhhcccCCCCCccEEEEEecC
Q 009512 459 -------------MPNSIKEYVHQIGRASQMGDEGTAIVFVNE 488 (533)
Q Consensus 459 -------------~p~s~~~y~qriGR~gR~g~~g~~~~l~~~ 488 (533)
.|.|-..-.||.|||||.| +|.|+-+++.
T Consensus 564 synprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 564 SYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred CcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 3567788899999999995 8999999983
No 112
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=2.9e-20 Score=197.82 Aligned_cols=316 Identities=18% Similarity=0.240 Sum_probs=219.0
Q ss_pred CCCCHHHHHHHHHHhCC----CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009512 156 DMPTPVQMQAIPSALSG----KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g----~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
..+++-|..++..+.+. ...++.+.||||||.+|+-.+-..+. .|..+|+|+|-..|..|+...++
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~----------~GkqvLvLVPEI~Ltpq~~~rf~ 266 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA----------QGKQVLVLVPEIALTPQLLARFK 266 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH----------cCCEEEEEeccccchHHHHHHHH
Confidence 36788999999999855 56899999999999988765554443 46789999999999999887777
Q ss_pred HHhcCCCCeEEEEEcCCchHHHH---HHHH-cCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc---c---h
Q 009512 232 LLGKGLPFKTALVVGGDAMARQV---YRIQ-QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR---G---F 301 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~---~---~ 301 (533)
..+ +.++..++++.+..+.. .+.. ....|+|+|=..+ ...++++++||+||=|.-.-. + .
T Consensus 267 ~rF---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~sYKq~~~prYh 336 (730)
T COG1198 267 ARF---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEDGPRYH 336 (730)
T ss_pred HHh---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEeccccccccCCcCCCcC
Confidence 654 46777777776655443 3333 3489999993222 246889999999999964311 1 3
Q ss_pred HHHHHHHHHhCCCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchh----hHHHHHHHHHhc
Q 009512 302 RDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNK----KKQKLFDILMSK 377 (533)
Q Consensus 302 ~~~i~~i~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~----k~~~l~~~l~~~ 377 (533)
...+.....+....++|+-|||++-+....+.......+.+.........+.+.-.....+... -...+++.+...
T Consensus 337 ARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~ 416 (730)
T COG1198 337 ARDVAVLRAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKT 416 (730)
T ss_pred HHHHHHHHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHH
Confidence 4667777777789999999999986544443222112222222222222222222211111111 225677777777
Q ss_pred cCCCCCEEEEEcCcccH------------------------------------------------------------HHH
Q 009512 378 QHFTPPAVVYVGSRLGA------------------------------------------------------------DLL 397 (533)
Q Consensus 378 ~~~~~~~lIF~~s~~~~------------------------------------------------------------~~l 397 (533)
...+.++|+|+|.+.-+ +.+
T Consensus 417 l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 417 LERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred HhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 77788999999887432 444
Q ss_pred HHHHHhhc-CCeEEEEcCCCCHH--HHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCC------------C
Q 009512 398 SNAISVTT-GMKALSIHGEKPMK--ERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPN------------S 462 (533)
Q Consensus 398 ~~~l~~~~-~~~~~~ih~~~~~~--~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~------------s 462 (533)
++.|.+.+ +.++..+.++.+.. .-+..+..|.+|+.+|||.|++++.|.|+|++..|...|... .
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~ 576 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERT 576 (730)
T ss_pred HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHH
Confidence 55554332 56677777777653 356889999999999999999999999999999988866432 3
Q ss_pred HhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009512 463 IKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 463 ~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
...+.|-.|||||.+.+|.+++-....+-
T Consensus 577 fqll~QvaGRAgR~~~~G~VvIQT~~P~h 605 (730)
T COG1198 577 FQLLMQVAGRAGRAGKPGEVVIQTYNPDH 605 (730)
T ss_pred HHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence 34567888999999999998888765553
No 113
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.88 E-value=1.6e-21 Score=203.53 Aligned_cols=296 Identities=16% Similarity=0.170 Sum_probs=191.8
Q ss_pred CCCCHHHHHHHHHHh----CC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009512 156 DMPTPVQMQAIPSAL----SG-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~----~g-~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
..|+.+|..||..+. .| +.+|++++||+|||.++. .++.+|+.. +..+++|+|+-+++|..|.+..+
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~-------~~~KRVLFLaDR~~Lv~QA~~af 235 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKS-------GWVKRVLFLADRNALVDQAYGAF 235 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhc-------chhheeeEEechHHHHHHHHHHH
Confidence 468999999998865 44 359999999999998754 444455432 45678999999999999999888
Q ss_pred HHHhcCCC-CeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcC-----CCCCCCeeEEEEeccchhhhcchHHH
Q 009512 231 KLLGKGLP-FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-----DIELDDIRMFVLDEVDCMLQRGFRDQ 304 (533)
Q Consensus 231 ~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-----~~~l~~i~~vVvDEah~~~~~~~~~~ 304 (533)
..+..... ++.+.-..+. ..++|.|+|++.+....... .+....+++||+||||| |....
T Consensus 236 ~~~~P~~~~~n~i~~~~~~----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~ 301 (875)
T COG4096 236 EDFLPFGTKMNKIEDKKGD----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSE 301 (875)
T ss_pred HHhCCCccceeeeecccCC----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhh
Confidence 88865421 2222222221 14799999999998888764 34566799999999998 44555
Q ss_pred HHHHHHhCCCCcEEEecccCcHHHHHHHHh-------------------hcCCeEEEEeCC----CCCCCccc-------
Q 009512 305 VMQIFRAISLPQILMYSATISQEVEKMSSS-------------------ISKDIVVVSVGK----PNMPNKAV------- 354 (533)
Q Consensus 305 i~~i~~~~~~~q~i~~SAT~~~~~~~~~~~-------------------~~~~~~~i~~~~----~~~~~~~i------- 354 (533)
...|+..+...++ ++|||+......---. ++..+-.+.+.. .+..+...
T Consensus 302 ~~~I~dYFdA~~~-gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~ 380 (875)
T COG4096 302 WSSILDYFDAATQ-GLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQ 380 (875)
T ss_pred hHHHHHHHHHHHH-hhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhh
Confidence 5677777644444 4499986533222222 222211111100 01000000
Q ss_pred -------eEEEEEec------chhhH----HHHHHHHHh--ccCCCCCEEEEEcCcccHHHHHHHHHhh----cCCeEEE
Q 009512 355 -------KQLAIWVE------SNKKK----QKLFDILMS--KQHFTPPAVVYVGSRLGADLLSNAISVT----TGMKALS 411 (533)
Q Consensus 355 -------~~~~~~~~------~~~k~----~~l~~~l~~--~~~~~~~~lIF~~s~~~~~~l~~~l~~~----~~~~~~~ 411 (533)
.+.+...+ ..... ..+.+.+.. ....-+++||||.+..+|+.+...|... .+--+..
T Consensus 381 g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~ 460 (875)
T COG4096 381 GEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMK 460 (875)
T ss_pred ccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEE
Confidence 00000000 00111 223333333 1222469999999999999999999632 2334666
Q ss_pred EcCCCCHHHHHHHHHHHhc-C-CCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCC
Q 009512 412 IHGEKPMKERREIMRSFLV-G-EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQM 476 (533)
Q Consensus 412 ih~~~~~~~r~~~~~~f~~-g-~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~ 476 (533)
+.|+-.+ -...++.|.. . -.+|.|+.+++..|+|+|.+..++++..-.|...|.||+||+-|.
T Consensus 461 IT~d~~~--~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 461 ITGDAEQ--AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred Eeccchh--hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 7776543 3344555554 3 456888899999999999999999999999999999999999885
No 114
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.88 E-value=3.2e-21 Score=207.10 Aligned_cols=314 Identities=18% Similarity=0.212 Sum_probs=218.8
Q ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHH-HHHhcC
Q 009512 158 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA-KLLGKG 236 (533)
Q Consensus 158 p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~-~~~~~~ 236 (533)
-+..+.+.+.++.+.+.++|+|.||+|||+..--.++...... +...++++..|+|--|..+++.. .+.+..
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~-------~~~~~IicTQPRRIsAIsvAeRVa~ER~~~ 246 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIES-------GAACNIICTQPRRISAISVAERVAKERGES 246 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhc-------CCCCeEEecCCchHHHHHHHHHHHHHhccc
Confidence 4678888999999999999999999999996544455544431 25566888889999999877755 445444
Q ss_pred CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhh-hcc-hHHHHHHHHHhCCC
Q 009512 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML-QRG-FRDQVMQIFRAISL 314 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~-~~~-~~~~i~~i~~~~~~ 314 (533)
.+-.+..-.+...... ....+++||.|.|++.+... -.+..+++||+||+|.-. +.. +.-.+..++.+.++
T Consensus 247 ~g~~VGYqvrl~~~~s------~~t~L~fcTtGvLLr~L~~~-~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~ 319 (924)
T KOG0920|consen 247 LGEEVGYQVRLESKRS------RETRLLFCTTGVLLRRLQSD-PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPD 319 (924)
T ss_pred cCCeeeEEEeeecccC------CceeEEEecHHHHHHHhccC-cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCC
Confidence 5544444444433222 33789999999999999884 458899999999999532 222 33455555666689
Q ss_pred CcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCc----------------cceEE-------------EEEecc--
Q 009512 315 PQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNK----------------AVKQL-------------AIWVES-- 363 (533)
Q Consensus 315 ~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----------------~i~~~-------------~~~~~~-- 363 (533)
.++|+||||+.. +.+...|...++. .+.....+.. ...+. ..+..+
T Consensus 320 LkvILMSAT~da--e~fs~YF~~~pvi-~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id 396 (924)
T KOG0920|consen 320 LKVILMSATLDA--ELFSDYFGGCPVI-TIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEID 396 (924)
T ss_pred ceEEEeeeecch--HHHHHHhCCCceE-eecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcccccc
Confidence 999999999873 3333344433332 2221111100 00000 000000
Q ss_pred hhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhh------cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 009512 364 NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT------TGMKALSIHGEKPMKERREIMRSFLVGEVPVIV 437 (533)
Q Consensus 364 ~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~------~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLv 437 (533)
..-...++..+.+. ...+.+|||.+...+...+.+.|... ...-+..+|+.|+..+++.+......|..+|++
T Consensus 397 ~~Li~~li~~I~~~-~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIl 475 (924)
T KOG0920|consen 397 YDLIEDLIEYIDER-EFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIIL 475 (924)
T ss_pred HHHHHHHHHhcccC-CCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhh
Confidence 11122223333222 44678999999999999999998521 235677899999999999999999999999999
Q ss_pred EeccccccCCCCCccEEEEcC--------C----------CCCHhHHHHhhcccCCCCCccEEEEEecCcC
Q 009512 438 ATGILGRGVELLGVRQVIIFD--------M----------PNSIKEYVHQIGRASQMGDEGTAIVFVNEEN 490 (533)
Q Consensus 438 aT~~~~~Gldi~~v~~VI~~~--------~----------p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~ 490 (533)
||++++.+|.|+++-+||+.+ + +-|-..-.||.|||||. .+|.||.+++...
T Consensus 476 aTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~ 545 (924)
T KOG0920|consen 476 ATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSR 545 (924)
T ss_pred hhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhh
Confidence 999999999999999999843 2 23566779999999998 7999999998653
No 115
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.88 E-value=6.8e-20 Score=198.32 Aligned_cols=149 Identities=21% Similarity=0.323 Sum_probs=131.7
Q ss_pred hhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 009512 365 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGR 444 (533)
Q Consensus 365 ~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~ 444 (533)
.+...+++.+......+.++||||+++..++.|+..|. ..|+++..+||++++.+|..+++.|+.|.+.|||||+++++
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~-~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLK-ELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHh-hcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 44567777777766667899999999999999999998 78999999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEcCC-----CCCHhHHHHhhcccCCCCCccEEEEEecC---------cCHHHHHHHHHHHHhcCCCCCH
Q 009512 445 GVELLGVRQVIIFDM-----PNSIKEYVHQIGRASQMGDEGTAIVFVNE---------ENKNLFQELVDILKSSGAGIPR 510 (533)
Q Consensus 445 Gldi~~v~~VI~~~~-----p~s~~~y~qriGR~gR~g~~g~~~~l~~~---------~~~~~~~~l~~~l~~~~~~~p~ 510 (533)
|+|+|++++||++|. |.+...|+||+||+||. ..|.|++|++. .+....+++...++.....+|.
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 999999999999885 78999999999999996 78999999984 4556677777788888888887
Q ss_pred HHHhc
Q 009512 511 ELINS 515 (533)
Q Consensus 511 ~l~~~ 515 (533)
...+-
T Consensus 588 ~~~~~ 592 (652)
T PRK05298 588 TIKKK 592 (652)
T ss_pred hHHHH
Confidence 76544
No 116
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.88 E-value=3e-20 Score=201.82 Aligned_cols=302 Identities=15% Similarity=0.156 Sum_probs=182.8
Q ss_pred CCCHHHHHHHHHHh----C------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009512 157 MPTPVQMQAIPSAL----S------GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~----~------g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
-++++|..|+..+. . .+..+++++||||||++++..+...+ . ....+++|||+|+.+|..|+
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~-------~~~~~~vl~lvdR~~L~~Q~ 309 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-E-------LLKNPKVFFVVDRRELDYQL 309 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-h-------hcCCCeEEEEECcHHHHHHH
Confidence 37889999998865 2 25799999999999987665544332 1 13568899999999999999
Q ss_pred HHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHc-CCceeecChHHHHHHHHcC--CCCCCCe-eEEEEeccchhhhcchH
Q 009512 227 EEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQ-GVELIVGTPGRLIDLLMKH--DIELDDI-RMFVLDEVDCMLQRGFR 302 (533)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~--~~~l~~i-~~vVvDEah~~~~~~~~ 302 (533)
.+.+..+..... .+..+.......+.. ...|+|+|.++|...+... .....+. -+||+||||+....
T Consensus 310 ~~~f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~--- 380 (667)
T TIGR00348 310 MKEFQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG--- 380 (667)
T ss_pred HHHHHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch---
Confidence 999988853211 111122222222322 3689999999997644321 1111111 28999999986432
Q ss_pred HHHHHHHHhCCCCcEEEecccCcHHHHH-HHHhhc---CCeEEE-EeCC---CCCCCccceEEEE---Eec---------
Q 009512 303 DQVMQIFRAISLPQILMYSATISQEVEK-MSSSIS---KDIVVV-SVGK---PNMPNKAVKQLAI---WVE--------- 362 (533)
Q Consensus 303 ~~i~~i~~~~~~~q~i~~SAT~~~~~~~-~~~~~~---~~~~~i-~~~~---~~~~~~~i~~~~~---~~~--------- 362 (533)
.....+...+++...++||||+-..... ....+. .+++.. +... .+...+....... ..+
T Consensus 381 ~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~ 460 (667)
T TIGR00348 381 ELAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFD 460 (667)
T ss_pred HHHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHH
Confidence 2223333567888999999999532110 001111 122111 1100 0000000000000 000
Q ss_pred -----------c-------------------hhhHHHHHHHHHh-----ccCCCCCEEEEEcCcccHHHHHHHHHhhc--
Q 009512 363 -----------S-------------------NKKKQKLFDILMS-----KQHFTPPAVVYVGSRLGADLLSNAISVTT-- 405 (533)
Q Consensus 363 -----------~-------------------~~k~~~l~~~l~~-----~~~~~~~~lIF~~s~~~~~~l~~~l~~~~-- 405 (533)
. +.....+.+.+.. ......+++|||.++..|..+.+.|.+..
T Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~ 540 (667)
T TIGR00348 461 EIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNE 540 (667)
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccc
Confidence 0 0001111111111 12234799999999999999999886332
Q ss_pred --CCeEEEEcCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEeccccccCCCCCccEEEEcCCCC
Q 009512 406 --GMKALSIHGEKPMK---------------------ERREIMRSFLV-GEVPVIVATGILGRGVELLGVRQVIIFDMPN 461 (533)
Q Consensus 406 --~~~~~~ih~~~~~~---------------------~r~~~~~~f~~-g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~ 461 (533)
+..+..+++..+.. ....+++.|++ +.++|||+++++..|+|.|.+++++...+-.
T Consensus 541 ~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk 620 (667)
T TIGR00348 541 KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK 620 (667)
T ss_pred ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc
Confidence 24456666654332 22478889976 6899999999999999999998888777655
Q ss_pred CHhHHHHhhcccCCC
Q 009512 462 SIKEYVHQIGRASQM 476 (533)
Q Consensus 462 s~~~y~qriGR~gR~ 476 (533)
+ ..++|++||+.|.
T Consensus 621 ~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 621 Y-HGLLQAIARTNRI 634 (667)
T ss_pred c-cHHHHHHHHhccc
Confidence 5 4589999999993
No 117
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=2.8e-20 Score=194.67 Aligned_cols=314 Identities=18% Similarity=0.238 Sum_probs=225.5
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009512 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.|+++|.-+.-.++.|+ ++.+.||+|||+++.+|++..++. |..+.|++|+..||.|-++++..+...
T Consensus 78 r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~----------G~~VhvvT~NdyLA~RDae~m~~ly~~ 145 (764)
T PRK12326 78 RPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ----------GRRVHVITVNDYLARRDAEWMGPLYEA 145 (764)
T ss_pred CcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc----------CCCeEEEcCCHHHHHHHHHHHHHHHHh
Confidence 78999999999998885 789999999999999999877654 566999999999999999999999999
Q ss_pred CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcC------CCCCCCeeEEEEeccchhhhc----------
Q 009512 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQR---------- 299 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~i~~vVvDEah~~~~~---------- 299 (533)
+|+++.++.++.+....... -.++|+++|...| .++++.+ ......+.+.||||+|.++=.
T Consensus 146 LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg 223 (764)
T PRK12326 146 LGLTVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAG 223 (764)
T ss_pred cCCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeC
Confidence 99999999887665543222 2489999999876 3333321 122456889999999987510
Q ss_pred -----chHHHHHHHHHhCCC---------C--------------------------------------------------
Q 009512 300 -----GFRDQVMQIFRAISL---------P-------------------------------------------------- 315 (533)
Q Consensus 300 -----~~~~~i~~i~~~~~~---------~-------------------------------------------------- 315 (533)
.....+..+...+.. .
T Consensus 224 ~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~d 303 (764)
T PRK12326 224 STPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVH 303 (764)
T ss_pred CCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCc
Confidence 011112222222200 0
Q ss_pred ------------------------------------------------------------cEEEecccCcHHHHHHHHhh
Q 009512 316 ------------------------------------------------------------QILMYSATISQEVEKMSSSI 335 (533)
Q Consensus 316 ------------------------------------------------------------q~i~~SAT~~~~~~~~~~~~ 335 (533)
++.+||+|.....+++...+
T Consensus 304 YiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY 383 (764)
T PRK12326 304 YIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFY 383 (764)
T ss_pred EEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHh
Confidence 34455555554445554444
Q ss_pred cCCeEEEEeCCCCCCCccc-eEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcC
Q 009512 336 SKDIVVVSVGKPNMPNKAV-KQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHG 414 (533)
Q Consensus 336 ~~~~~~i~~~~~~~~~~~i-~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~ 414 (533)
..+.+.+... .+.... .....+.....|...+++.+......+.|+||.+.|.+..+.++..|. ..+++...+++
T Consensus 384 ~l~Vv~IPtn---kp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~-~~gI~h~vLNA 459 (764)
T PRK12326 384 DLGVSVIPPN---KPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLR-AAGVPAVVLNA 459 (764)
T ss_pred CCcEEECCCC---CCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH-hCCCcceeecc
Confidence 4443333222 111111 122344556678888888877776778899999999999999999998 78999999998
Q ss_pred CCCHHHHHHHHHHHhcC-CCcEEEEeccccccCCCCCc---------------cEEEEcCCCCCHhHHHHhhcccCCCCC
Q 009512 415 EKPMKERREIMRSFLVG-EVPVIVATGILGRGVELLGV---------------RQVIIFDMPNSIKEYVHQIGRASQMGD 478 (533)
Q Consensus 415 ~~~~~~r~~~~~~f~~g-~~~VLvaT~~~~~Gldi~~v---------------~~VI~~~~p~s~~~y~qriGR~gR~g~ 478 (533)
.-...|-..+- ..| .-.|.|||++++||.||.-- =+||-...+.|-..-.|-.||+||.|.
T Consensus 460 k~~~~EA~IIa---~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGD 536 (764)
T PRK12326 460 KNDAEEARIIA---EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGD 536 (764)
T ss_pred CchHhHHHHHH---hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCC
Confidence 75433322222 245 45699999999999998621 278989999999999999999999999
Q ss_pred ccEEEEEecCcCH
Q 009512 479 EGTAIVFVNEENK 491 (533)
Q Consensus 479 ~g~~~~l~~~~~~ 491 (533)
+|.+-.|++-+|.
T Consensus 537 pGss~f~lSleDd 549 (764)
T PRK12326 537 PGSSVFFVSLEDD 549 (764)
T ss_pred CCceeEEEEcchh
Confidence 9999999987653
No 118
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.87 E-value=5.5e-20 Score=182.57 Aligned_cols=170 Identities=22% Similarity=0.300 Sum_probs=133.4
Q ss_pred CCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCccc
Q 009512 314 LPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLG 393 (533)
Q Consensus 314 ~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~ 393 (533)
.+|+|.+|||+.+.-..... .+.+.-.+...+...+. ...-+.......|+.-+......+.++||-+-+++.
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlDP~----ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLDPE----IEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEeecCCCCCCCc----eeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 46999999999763322211 12232223333332222 222334445667777777766677899999999999
Q ss_pred HHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCC-----CCCHhHHHH
Q 009512 394 ADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDM-----PNSIKEYVH 468 (533)
Q Consensus 394 ~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~-----p~s~~~y~q 468 (533)
|+.|.++|. ..|+++..+|++...-+|.+++..++.|.++|||.-+.+-+|||+|.|..|.++|. ..|-...+|
T Consensus 459 AEdLT~Yl~-e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQ 537 (663)
T COG0556 459 AEDLTEYLK-ELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQ 537 (663)
T ss_pred HHHHHHHHH-hcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHH
Confidence 999999998 89999999999999999999999999999999999999999999999999999985 458899999
Q ss_pred hhcccCCCCCccEEEEEecCcCHH
Q 009512 469 QIGRASQMGDEGTAIVFVNEENKN 492 (533)
Q Consensus 469 riGR~gR~g~~g~~~~l~~~~~~~ 492 (533)
-||||.|. ..|.++.+.+.-...
T Consensus 538 tIGRAARN-~~GkvIlYAD~iT~s 560 (663)
T COG0556 538 TIGRAARN-VNGKVILYADKITDS 560 (663)
T ss_pred HHHHHhhc-cCCeEEEEchhhhHH
Confidence 99999996 679999888754443
No 119
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.87 E-value=3.6e-21 Score=201.57 Aligned_cols=158 Identities=20% Similarity=0.198 Sum_probs=114.8
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh-c
Q 009512 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG-K 235 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~-~ 235 (533)
.|..||.+.+..+-.+.+++|+|||.+|||.+....+=.++.. .....+|+++||++|++|+........ .
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe--------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~ 582 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE--------SDSDVVIYVAPTKALVNQVSANVYARFDT 582 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh--------cCCCEEEEecchHHHhhhhhHHHHHhhcc
Confidence 5788999999999999999999999999999766665555543 556789999999999999766554433 2
Q ss_pred CCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHc---CCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC
Q 009512 236 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK---HDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 236 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~---~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~ 312 (533)
..-.+-+.+.|..+..-++. .-.|+|+|+-|+.+..++.. ......+++++|+||+|.+....-.-.+++++ .+
T Consensus 583 ~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll-~l 659 (1330)
T KOG0949|consen 583 KTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLL-LL 659 (1330)
T ss_pred CccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHH-Hh
Confidence 22233334444333222221 12499999999999999887 44567899999999999998654333333333 33
Q ss_pred CCCcEEEecccCc
Q 009512 313 SLPQILMYSATIS 325 (533)
Q Consensus 313 ~~~q~i~~SAT~~ 325 (533)
-.+.++++|||+.
T Consensus 660 i~CP~L~LSATig 672 (1330)
T KOG0949|consen 660 IPCPFLVLSATIG 672 (1330)
T ss_pred cCCCeeEEecccC
Confidence 5789999999974
No 120
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=2.5e-20 Score=191.72 Aligned_cols=306 Identities=17% Similarity=0.182 Sum_probs=195.5
Q ss_pred HHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHH-HHHHHhcCCCCe
Q 009512 162 QMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE-QAKLLGKGLPFK 240 (533)
Q Consensus 162 Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~-~~~~~~~~~~~~ 240 (533)
-+++..+|..+--+||||.||||||+ .+|-+-+=.......+ ..+..+-|.-|+|.-|..+.. ...+++. ++-.
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~--~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~e 335 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQS--SSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSE 335 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccC--CCCCeeeecCchHHHHHHHHHHHHHHhcc-Cccc
Confidence 34556666677779999999999998 5665543322221111 224567788899988777544 3344443 3433
Q ss_pred E--EEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC------
Q 009512 241 T--ALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI------ 312 (533)
Q Consensus 241 ~--~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~------ 312 (533)
+ ..-+.|... ....|-++|.|.|+.-+.+.. .|..++.||+||||.-.- +...+.-+++++
T Consensus 336 VsYqIRfd~ti~--------e~T~IkFMTDGVLLrEi~~Df-lL~kYSvIIlDEAHERSv--nTDILiGmLSRiV~LR~k 404 (1172)
T KOG0926|consen 336 VSYQIRFDGTIG--------EDTSIKFMTDGVLLREIENDF-LLTKYSVIILDEAHERSV--NTDILIGMLSRIVPLRQK 404 (1172)
T ss_pred eeEEEEeccccC--------CCceeEEecchHHHHHHHHhH-hhhhceeEEechhhhccc--hHHHHHHHHHHHHHHHHH
Confidence 3 333444322 347899999999999888664 489999999999996321 122222233322
Q ss_pred --------CCCcEEEecccCcH-HHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhH----HHHHHHHHhccC
Q 009512 313 --------SLPQILMYSATISQ-EVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKK----QKLFDILMSKQH 379 (533)
Q Consensus 313 --------~~~q~i~~SAT~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~----~~l~~~l~~~~~ 379 (533)
++.++|.||||+.- ++-.-.+.|...|..+.+..+..+... .+......+.. .+.+.+.. ..
T Consensus 405 ~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsI---HF~krT~~DYi~eAfrKtc~IH~--kL 479 (1172)
T KOG0926|consen 405 YYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSI---HFNKRTPDDYIAEAFRKTCKIHK--KL 479 (1172)
T ss_pred HhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEE---EeccCCCchHHHHHHHHHHHHhh--cC
Confidence 46789999999852 111111223333335555444443221 11111111222 22222222 22
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHhhcCCe---------------------------------------------------
Q 009512 380 FTPPAVVYVGSRLGADLLSNAISVTTGMK--------------------------------------------------- 408 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~~~~~~--------------------------------------------------- 408 (533)
..+.+|||+....+++.|+..|++.....
T Consensus 480 P~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~ 559 (1172)
T KOG0926|consen 480 PPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDS 559 (1172)
T ss_pred CCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcc
Confidence 34679999999999999999997442200
Q ss_pred -----------------------------------------------EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q 009512 409 -----------------------------------------------ALSIHGEKPMKERREIMRSFLVGEVPVIVATGI 441 (533)
Q Consensus 409 -----------------------------------------------~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~ 441 (533)
+..+++=++.+.+.++++.-..|..-++|||++
T Consensus 560 ~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNV 639 (1172)
T KOG0926|consen 560 GFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNV 639 (1172)
T ss_pred cchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccc
Confidence 114556667778888888888888889999999
Q ss_pred ccccCCCCCccEEEEcC--------CC----------CCHhHHHHhhcccCCCCCccEEEEEecCc
Q 009512 442 LGRGVELLGVRQVIIFD--------MP----------NSIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 442 ~~~Gldi~~v~~VI~~~--------~p----------~s~~~y~qriGR~gR~g~~g~~~~l~~~~ 489 (533)
++..|.||++++||+.+ -- .|-..--||.|||||.| +|+||-+++..
T Consensus 640 AETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 640 AETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred hhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 99999999999999844 22 24455579999999985 89999999863
No 121
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=3.6e-20 Score=187.58 Aligned_cols=308 Identities=18% Similarity=0.208 Sum_probs=208.6
Q ss_pred CHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHH-HHHhcCC
Q 009512 159 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA-KLLGKGL 237 (533)
Q Consensus 159 ~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~-~~~~~~~ 237 (533)
..++.+.+..+..++-++|.+.||||||+ .+|-+-+... -..++.+-+..|.|.-|..++... .++...+
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edG-------Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDG-------YADNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhcc-------cccCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 34556666666678889999999999998 4444322221 133455677779999998866544 3443333
Q ss_pred CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhh-hcc-hHHHHHHHHHhCCCC
Q 009512 238 PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML-QRG-FRDQVMQIFRAISLP 315 (533)
Q Consensus 238 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~-~~~-~~~~i~~i~~~~~~~ 315 (533)
|-.+....--+... .....|-++|.|.|++-..... .|..+++||+||||.-. +.. ....+..++.+-.+.
T Consensus 429 G~~VGYsIRFEdvT------~~~T~IkymTDGiLLrEsL~d~-~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVT------SEDTKIKYMTDGILLRESLKDR-DLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred ccccceEEEeeecC------CCceeEEEeccchHHHHHhhhh-hhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 43332221111111 1235677999999988776554 58899999999999632 111 223344455555788
Q ss_pred cEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHh-c-cCCCCCEEEEEcCccc
Q 009512 316 QILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMS-K-QHFTPPAVVYVGSRLG 393 (533)
Q Consensus 316 q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~-~-~~~~~~~lIF~~s~~~ 393 (533)
++|.+|||+.. +++...|..-|.+. +..+..+ +...+...+-.+.....+.-... + ....+-+|||...++.
T Consensus 502 KliVtSATm~a--~kf~nfFgn~p~f~-IpGRTyP---V~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqed 575 (1042)
T KOG0924|consen 502 KLIVTSATMDA--QKFSNFFGNCPQFT-IPGRTYP---VEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQED 575 (1042)
T ss_pred eEEEeeccccH--HHHHHHhCCCceee-ecCCccc---eEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcc
Confidence 99999999974 55666665444433 3333333 33334444444444444333222 1 1234579999999987
Q ss_pred HHHHHHHHHh---------hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcC------
Q 009512 394 ADLLSNAISV---------TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD------ 458 (533)
Q Consensus 394 ~~~l~~~l~~---------~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~------ 458 (533)
.+..+..+.. ..++.+..+++.+++.-+.++++.-..|..+++|||++++..|.+|++.+||..+
T Consensus 576 iE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kv 655 (1042)
T KOG0924|consen 576 IECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKV 655 (1042)
T ss_pred hhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeee
Confidence 7766665542 1367899999999999999999888889999999999999999999999999844
Q ss_pred ------------CCCCHhHHHHhhcccCCCCCccEEEEEecCc
Q 009512 459 ------------MPNSIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 459 ------------~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~ 489 (533)
.|.|-..--||.|||||.| +|.||-++++.
T Consensus 656 yn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 656 YNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred cccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 3678888899999999984 89999999863
No 122
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.86 E-value=5e-20 Score=170.98 Aligned_cols=186 Identities=36% Similarity=0.582 Sum_probs=155.6
Q ss_pred cCCCCCCHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009512 153 AGYDMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 153 ~g~~~p~~~Q~~~i~~i~~g-~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
.++..|+++|.++++.+... +++++.++||+|||.++..+++..+.. ....++||++|++.++.|+...+.
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~--------~~~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKR--------GKGKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcc--------cCCCcEEEEeCCHHHHHHHHHHHH
Confidence 46788999999999999988 999999999999999988888877654 224679999999999999999998
Q ss_pred HHhcCCCCeEEEEEcCCchHHHHHHHHcCC-ceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHH
Q 009512 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGV-ELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFR 310 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~-~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~ 310 (533)
.+............++.........+..+. +++++|++.+.+.+.........++++|+||+|.+....+...+..++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 76 KLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred HHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHH
Confidence 887655445666667766566666666666 9999999999999988776778899999999999987567788888888
Q ss_pred hC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCC
Q 009512 311 AI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGK 346 (533)
Q Consensus 311 ~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~ 346 (533)
.+ +..+++++|||+++........+....+.+....
T Consensus 156 ~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 156 LLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred hCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 77 6789999999999988888888888777776654
No 123
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.3e-19 Score=194.27 Aligned_cols=316 Identities=19% Similarity=0.213 Sum_probs=220.3
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhc
Q 009512 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
-.|+++|.-.--.+..|+ |+.+.||+|||+++.+|++...+. |..+.|++|+..||.|-++++..+..
T Consensus 81 m~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~----------G~~VhvvT~ndyLA~RD~e~m~~l~~ 148 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALS----------GKGVHVVTVNDYLARRDANWMRPLYE 148 (913)
T ss_pred CCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHc----------CCCEEEEeCCHHHHHHHHHHHHHHhc
Confidence 477888887766666664 889999999999999999876653 66699999999999999999999999
Q ss_pred CCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcCC------CCCCCeeEEEEeccchhhh-c--------
Q 009512 236 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKHD------IELDDIRMFVLDEVDCMLQ-R-------- 299 (533)
Q Consensus 236 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~~------~~l~~i~~vVvDEah~~~~-~-------- 299 (533)
.+|+++.++.++.+.......+ .++|+++|..-| .++|+.+- .-...+.++||||+|.++= .
T Consensus 149 ~lGl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIIS 226 (913)
T PRK13103 149 FLGLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIIS 226 (913)
T ss_pred ccCCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeec
Confidence 9999999988776654433222 389999999886 44443321 1237789999999998751 0
Q ss_pred -------chHHHHHHHHHhCC--------------------CC-------------------------------------
Q 009512 300 -------GFRDQVMQIFRAIS--------------------LP------------------------------------- 315 (533)
Q Consensus 300 -------~~~~~i~~i~~~~~--------------------~~------------------------------------- 315 (533)
.....+..+...+. ..
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~ 306 (913)
T PRK13103 227 GQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGL 306 (913)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHH
Confidence 01111111111110 00
Q ss_pred -------------------------------------------------------------------------------c
Q 009512 316 -------------------------------------------------------------------------------Q 316 (533)
Q Consensus 316 -------------------------------------------------------------------------------q 316 (533)
+
T Consensus 307 ~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (913)
T PRK13103 307 LTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNK 386 (913)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcch
Confidence 2
Q ss_pred EEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHH
Q 009512 317 ILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADL 396 (533)
Q Consensus 317 ~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~ 396 (533)
+-+||+|...+..++...+..+.+.+....+... . -.....+.....|...+++-+......+.|+||-+.|.+..+.
T Consensus 387 LsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R-~-D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ 464 (913)
T PRK13103 387 LSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLAR-K-DFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEH 464 (913)
T ss_pred hccCCCCCHHHHHHHHHHhCCCEEECCCCCCccc-c-cCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHH
Confidence 3334444433334444444434333322211110 0 1122345666778888888887777788999999999999999
Q ss_pred HHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcEEEEeccccccCCCC--------------------------
Q 009512 397 LSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVPVIVATGILGRGVELL-------------------------- 449 (533)
Q Consensus 397 l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~VLvaT~~~~~Gldi~-------------------------- 449 (533)
|+..|. ..+++...+++.....|-..+- ..| .-.|.|||++++||.||.
T Consensus 465 ls~~L~-~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~ 540 (913)
T PRK13103 465 MSNLLK-KEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKAD 540 (913)
T ss_pred HHHHHH-HcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 999998 7888887777764433322222 456 457999999999999984
Q ss_pred -----------CccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009512 450 -----------GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 450 -----------~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
+==+||-...+.|-.--.|-.||+||.|.+|.+-.|++-+|.
T Consensus 541 ~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 541 WQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 112788888999999999999999999999999999987653
No 124
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.86 E-value=2.3e-21 Score=207.46 Aligned_cols=344 Identities=18% Similarity=0.277 Sum_probs=241.9
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCC
Q 009512 129 AVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQN 207 (533)
Q Consensus 129 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~-~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 207 (533)
+.|.++.++...+.+.--....... |...+|+|.++++.+. +++++++.||+|||||.++.++++. .
T Consensus 1116 p~pt~lld~~~~~~~~l~N~~~~~l-f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~-----------~ 1183 (1674)
T KOG0951|consen 1116 PPPTELLDLQPLPVSALRNPSFETL-FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR-----------P 1183 (1674)
T ss_pred CCCchhhhccccchhccCCcchhhh-ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC-----------C
Confidence 4556666666544332111112222 4455999999999998 6678999999999999999888764 2
Q ss_pred CCCceEEEEcccHHHHHH-HHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCee
Q 009512 208 QKNPLAMVLTPTRELCIQ-VEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIR 286 (533)
Q Consensus 208 ~~~~~~Lil~Ptr~L~~Q-~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~ 286 (533)
....++++++|..+.+.. ...|-++|....|..++.+.|..+..- .+.+..+|+|+||+++..+ + ..+.++
T Consensus 1184 ~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~v~ 1255 (1674)
T KOG0951|consen 1184 DTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQVD 1255 (1674)
T ss_pred ccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhhcc
Confidence 456789999999999886 455778888886666666655544432 3445679999999999666 2 577889
Q ss_pred EEEEeccchhhhcchHHH------HHHHHHhC-CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEE
Q 009512 287 MFVLDEVDCMLQRGFRDQ------VMQIFRAI-SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAI 359 (533)
Q Consensus 287 ~vVvDEah~~~~~~~~~~------i~~i~~~~-~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~ 359 (533)
+.|+||+|.+.+- .++. ++.|-+++ +..+++++|..+.+ ...++..-....+++....+..+.....|.+.
T Consensus 1256 l~i~d~lh~igg~-~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lan-a~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~ 1333 (1674)
T KOG0951|consen 1256 LFIVDELHLIGGV-YGAVYEVICSMRYIASQLEKKIRVVALSSSLAN-ARDLIGASSSGVFNFSPSVRPVPLEIHIQSVD 1333 (1674)
T ss_pred eEeeehhhhhccc-CCceEEEEeeHHHHHHHHHhheeEEEeehhhcc-chhhccccccceeecCcccCCCceeEEEEEec
Confidence 9999999988732 2221 33333333 67899999988765 33344444455667777777766655555555
Q ss_pred EecchhhHHHH----HHHHHhccCCCCCEEEEEcCcccHHHHHHHHH---------------------hhcCCeEEEEcC
Q 009512 360 WVESNKKKQKL----FDILMSKQHFTPPAVVYVGSRLGADLLSNAIS---------------------VTTGMKALSIHG 414 (533)
Q Consensus 360 ~~~~~~k~~~l----~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~---------------------~~~~~~~~~ih~ 414 (533)
..........+ +..+.++.....+.+||++++++|..++..+- .+..++...-|.
T Consensus 1334 ~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e 1413 (1674)
T KOG0951|consen 1334 ISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHE 1413 (1674)
T ss_pred cchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccccc
Confidence 44444433333 33344455567799999999999987766542 011222233389
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEE-----cC------CCCCHhHHHHhhcccCCCCCccEEE
Q 009512 415 EKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVII-----FD------MPNSIKEYVHQIGRASQMGDEGTAI 483 (533)
Q Consensus 415 ~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~-----~~------~p~s~~~y~qriGR~gR~g~~g~~~ 483 (533)
+++..+...+...|..|.+.|+|...- ..|+-.. ...||. || .+.++.+..||+|+|.| .|.|+
T Consensus 1414 ~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~v 1488 (1674)
T KOG0951|consen 1414 GLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCV 1488 (1674)
T ss_pred ccCcchHHHHHHHHhcCcEEEEEEEcc-ccccccc-ceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEE
Confidence 999999999999999999999998877 8888865 445554 33 46789999999999998 56899
Q ss_pred EEecCcCHHHHHHHHH
Q 009512 484 VFVNEENKNLFQELVD 499 (533)
Q Consensus 484 ~l~~~~~~~~~~~l~~ 499 (533)
+++...++.++++++.
T Consensus 1489 i~~~~~~k~yykkfl~ 1504 (1674)
T KOG0951|consen 1489 IMCHTPKKEYYKKFLY 1504 (1674)
T ss_pred EEecCchHHHHHHhcc
Confidence 9999999999998875
No 125
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=4e-20 Score=190.80 Aligned_cols=329 Identities=18% Similarity=0.207 Sum_probs=223.7
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~----~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.+.|+|++++.++. .+.-.|+...+|-|||... +..|..+.... .--..+|||||. .+..||..++..
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~------k~~~paLIVCP~-Tii~qW~~E~~~ 276 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSG------KLTKPALIVCPA-TIIHQWMKEFQT 276 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcc------cccCceEEEccH-HHHHHHHHHHHH
Confidence 56799999999876 4566899999999999753 33333333311 112559999998 566889999999
Q ss_pred HhcCCCCeEEEEEcCCchH--------HHHHH-----HHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc
Q 009512 233 LGKGLPFKTALVVGGDAMA--------RQVYR-----IQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~--------~~~~~-----l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~ 299 (533)
+.. .+++..+++..... ..... ......|+|+|++.+.-. ...+.-...+++|+||.|++-+.
T Consensus 277 w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNp 352 (923)
T KOG0387|consen 277 WWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNP 352 (923)
T ss_pred hCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCC
Confidence 875 46777777754420 00011 112467999998776321 22233345789999999999766
Q ss_pred chHHHHHHHHHhCCCCcEEEecccCcH-HHHHHHH---------------------------------------------
Q 009512 300 GFRDQVMQIFRAISLPQILMYSATISQ-EVEKMSS--------------------------------------------- 333 (533)
Q Consensus 300 ~~~~~i~~i~~~~~~~q~i~~SAT~~~-~~~~~~~--------------------------------------------- 333 (533)
+ .++...+..++..+.|.+|+|+-. .+.++..
T Consensus 353 n--s~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 353 N--SKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred c--cHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 4 566666777777888888988310 0000000
Q ss_pred ---------------------hhcC-CeEEEEe------------------------CCCCC------------CCc---
Q 009512 334 ---------------------SISK-DIVVVSV------------------------GKPNM------------PNK--- 352 (533)
Q Consensus 334 ---------------------~~~~-~~~~i~~------------------------~~~~~------------~~~--- 352 (533)
.+.. +-.++.. +..+. .+.
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 0000 0000000 00000 000
Q ss_pred ----cceEEE---EEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHH
Q 009512 353 ----AVKQLA---IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIM 425 (533)
Q Consensus 353 ----~i~~~~---~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~ 425 (533)
...+.- -......|...+..++..+...+.++|.|..++...+.|...|....++....+.|..+...|..++
T Consensus 511 ~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lV 590 (923)
T KOG0387|consen 511 RRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLV 590 (923)
T ss_pred CcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHH
Confidence 000000 1122345778888888888888889999999999999999999866899999999999999999999
Q ss_pred HHHhcCC-Cc-EEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEE--EEEecCc---CHHHHHHHH
Q 009512 426 RSFLVGE-VP-VIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTA--IVFVNEE---NKNLFQELV 498 (533)
Q Consensus 426 ~~f~~g~-~~-VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~--~~l~~~~---~~~~~~~l~ 498 (533)
+.|.++. +. +|++|.+.+-|+|+..++-||+||+.|++..-.|..-||.|.|++..+ |-|++.. ++-|.+.+.
T Consensus 591 d~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~ 670 (923)
T KOG0387|consen 591 DRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIF 670 (923)
T ss_pred HhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHH
Confidence 9999874 44 478999999999999999999999999999999999999999987544 4455543 444444444
Q ss_pred H
Q 009512 499 D 499 (533)
Q Consensus 499 ~ 499 (533)
+
T Consensus 671 K 671 (923)
T KOG0387|consen 671 K 671 (923)
T ss_pred H
Confidence 3
No 126
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.84 E-value=1.1e-18 Score=192.77 Aligned_cols=327 Identities=17% Similarity=0.253 Sum_probs=208.3
Q ss_pred CCCCCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH-HH
Q 009512 154 GYDMPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV-EE 228 (533)
Q Consensus 154 g~~~p~~~Q~~~i~~i~----~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~-~~ 228 (533)
|| ++++-|.+....+. .+..+++.|+||+|||++|++|++... .+.++||++||++|++|+ .+
T Consensus 243 ~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----------~~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 243 GL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----------DQRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred CC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----------CCCcEEEEeCcHHHHHHHHHH
Confidence 55 68999999666654 677899999999999999999987642 246799999999999998 57
Q ss_pred HHHHHhcCCCCeEEEEEcCCchHH-----------------------------------------------HHHH-----
Q 009512 229 QAKLLGKGLPFKTALVVGGDAMAR-----------------------------------------------QVYR----- 256 (533)
Q Consensus 229 ~~~~~~~~~~~~~~~~~gg~~~~~-----------------------------------------------~~~~----- 256 (533)
.+..+.+.+++++..+.|+...-- .+..
T Consensus 311 ~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~ 390 (820)
T PRK07246 311 EVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDG 390 (820)
T ss_pred HHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccC
Confidence 788887777777777776432100 0000
Q ss_pred -------------------HHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcc-----h-------HH--
Q 009512 257 -------------------IQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-----F-------RD-- 303 (533)
Q Consensus 257 -------------------l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~-----~-------~~-- 303 (533)
-...++|||+....|...+.... .+...+++||||||++.+-. . ..
T Consensus 391 ~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l 469 (820)
T PRK07246 391 NLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTI 469 (820)
T ss_pred CCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHH
Confidence 01235699999888877665443 36789999999999875311 0 00
Q ss_pred ------------------------------------------------HH-----------HHHHHh------C------
Q 009512 304 ------------------------------------------------QV-----------MQIFRA------I------ 312 (533)
Q Consensus 304 ------------------------------------------------~i-----------~~i~~~------~------ 312 (533)
.+ ..++.. +
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~ 549 (820)
T PRK07246 470 QKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQS 549 (820)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 00 000000 0
Q ss_pred ----------------------CCCcEEEecccCc--HHHHHHHHhhcCC-eEEEEeCCCCCCCccceEEEEEe----c-
Q 009512 313 ----------------------SLPQILMYSATIS--QEVEKMSSSISKD-IVVVSVGKPNMPNKAVKQLAIWV----E- 362 (533)
Q Consensus 313 ----------------------~~~q~i~~SAT~~--~~~~~~~~~~~~~-~~~i~~~~~~~~~~~i~~~~~~~----~- 362 (533)
....+|++|||++ +... +...+..+ ....... .... .+...++ +
T Consensus 550 ~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~---~~~~--~~~~~~i~~~~p~ 623 (820)
T PRK07246 550 EKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE---KDKK--QDQLVVVDQDMPL 623 (820)
T ss_pred CcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC---CChH--HccEEEeCCCCCC
Confidence 0125678888884 2222 33333221 1111111 1111 1111111 1
Q ss_pred -----chhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 009512 363 -----SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIV 437 (533)
Q Consensus 363 -----~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLv 437 (533)
.......+.+.+......++++||+++|.+..+.++..|. ...+++ ...|... .+..+++.|+.+.-.||+
T Consensus 624 ~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~-~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLl 699 (820)
T PRK07246 624 VTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLD-QWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILL 699 (820)
T ss_pred CCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHh-hcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEE
Confidence 1233445555554433456799999999999999999987 334444 3444222 356689999999889999
Q ss_pred EeccccccCCCCC--ccEEEEcCCCC------------------------------CHhHHHHhhcccCCCCCccEEEEE
Q 009512 438 ATGILGRGVELLG--VRQVIIFDMPN------------------------------SIKEYVHQIGRASQMGDEGTAIVF 485 (533)
Q Consensus 438 aT~~~~~Gldi~~--v~~VI~~~~p~------------------------------s~~~y~qriGR~gR~g~~g~~~~l 485 (533)
+|+.+.+|+|+|. ...||+..+|. -+..+.|.+||.-|...+--++++
T Consensus 700 G~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~i 779 (820)
T PRK07246 700 GLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLI 779 (820)
T ss_pred ecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 9999999999973 55666655441 233467899999998764335677
Q ss_pred ecCc--CHHHHHHHHHHHHh
Q 009512 486 VNEE--NKNLFQELVDILKS 503 (533)
Q Consensus 486 ~~~~--~~~~~~~l~~~l~~ 503 (533)
+++. .+.+-+.|++.|.+
T Consensus 780 lD~R~~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 780 LDRRILTKSYGKQILASLAE 799 (820)
T ss_pred ECCcccccHHHHHHHHhCCC
Confidence 7765 56777888877755
No 127
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.82 E-value=7.5e-20 Score=196.39 Aligned_cols=318 Identities=14% Similarity=0.178 Sum_probs=216.3
Q ss_pred CCCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009512 156 DMPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~----~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
.+++.+|.+.+++++ .+.++|+...+|.|||+. -+..|..+.... .-.+..||++|...+.. |..++.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~------~~~gpflvvvplst~~~-W~~ef~ 440 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSL------QIHGPFLVVVPLSTITA-WEREFE 440 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhh------hccCCeEEEeehhhhHH-HHHHHH
Confidence 688999999999876 788999999999999975 333444444311 12334899999977744 888888
Q ss_pred HHhcCCCCeEEEEEcCCchHHHHHHHH----c-----CCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchH
Q 009512 232 LLGKGLPFKTALVVGGDAMARQVYRIQ----Q-----GVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFR 302 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~----~-----~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~ 302 (533)
.+. .+++++.+|.....+.+.... . ..+++++|++.++.--. .+.--...++++||||++-+. .
T Consensus 441 ~w~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~--~ 513 (1373)
T KOG0384|consen 441 TWT---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND--E 513 (1373)
T ss_pred HHh---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch--H
Confidence 886 467788887766555443321 2 36899999988743211 122234578999999999754 4
Q ss_pred HHHHHHHHhCCCCcEEEecccCcH-HHHHHHHhh----------------------------------------cCCeE-
Q 009512 303 DQVMQIFRAISLPQILMYSATISQ-EVEKMSSSI----------------------------------------SKDIV- 340 (533)
Q Consensus 303 ~~i~~i~~~~~~~q~i~~SAT~~~-~~~~~~~~~----------------------------------------~~~~~- 340 (533)
..+...+..+....-+++|+|+-. .+.++...+ +..-+
T Consensus 514 ~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdve 593 (1373)
T KOG0384|consen 514 SKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVE 593 (1373)
T ss_pred HHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 555566777777777888888521 111111000 00000
Q ss_pred ---------EEEe-----------------------CCCCCCCc--cc--------eEEEEEecch-------------h
Q 009512 341 ---------VVSV-----------------------GKPNMPNK--AV--------KQLAIWVESN-------------K 365 (533)
Q Consensus 341 ---------~i~~-----------------------~~~~~~~~--~i--------~~~~~~~~~~-------------~ 365 (533)
.+.+ +.....+. ++ .+-+..-+.. .
T Consensus 594 kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~ 673 (1373)
T KOG0384|consen 594 KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDE 673 (1373)
T ss_pred cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHH
Confidence 0000 00000000 00 0000000000 0
Q ss_pred hH----------HHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC---C
Q 009512 366 KK----------QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG---E 432 (533)
Q Consensus 366 k~----------~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g---~ 432 (533)
.. -.|-.+|......+++||||.......+.|+++|. ..+++..-+.|.+..+-|+..++.|.+- .
T Consensus 674 ~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~-~r~ypfQRLDGsvrgelRq~AIDhFnap~Sdd 752 (1373)
T KOG0384|consen 674 ALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLS-LRGYPFQRLDGSVRGELRQQAIDHFNAPDSDD 752 (1373)
T ss_pred HHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHH-HcCCcceeccCCcchHHHHHHHHhccCCCCCc
Confidence 11 11223344455667899999999999999999998 8899999999999999999999999973 5
Q ss_pred CcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccE--EEEEecCc
Q 009512 433 VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGT--AIVFVNEE 489 (533)
Q Consensus 433 ~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~--~~~l~~~~ 489 (533)
+-+|+||.+.+-|||+..+++||+||..|++..-+|...||.|.|++.. +|-|++.+
T Consensus 753 FvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 753 FVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred eEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 6689999999999999999999999999999999999999999998754 56667765
No 128
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=2.6e-19 Score=178.10 Aligned_cols=346 Identities=11% Similarity=0.059 Sum_probs=242.7
Q ss_pred HcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009512 152 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 152 ~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
.+--.....+|.++++.+..|+++++.-.|.+||.+++.+..+..+.. ......+++.|+.++++....-+.
T Consensus 281 ~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~--------~~~s~~~~~~~~~~~~~~~~~~~~ 352 (1034)
T KOG4150|consen 281 KNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL--------CHATNSLLPSEMVEHLRNGSKGQV 352 (1034)
T ss_pred cccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc--------CcccceecchhHHHHhhccCCceE
Confidence 334556789999999999999999999999999999998887766543 233458899999999876443222
Q ss_pred HHhcC---CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCC----CCCCeeEEEEeccchhhhcchHH-
Q 009512 232 LLGKG---LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI----ELDDIRMFVLDEVDCMLQRGFRD- 303 (533)
Q Consensus 232 ~~~~~---~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~----~l~~i~~vVvDEah~~~~~~~~~- 303 (533)
-.... ..-.++-.+.|.+-.....-.+.+.+++++.|.....-...+.. .+-...++++||+|-.... |..
T Consensus 353 V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~ 431 (1034)
T KOG4150|consen 353 VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKAL 431 (1034)
T ss_pred EEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhH
Confidence 22111 12234556677776666666778899999999998766554332 2334567999999965432 333
Q ss_pred ---HHHHHHHhC------CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecc---------hh
Q 009512 304 ---QVMQIFRAI------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVES---------NK 365 (533)
Q Consensus 304 ---~i~~i~~~~------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~---------~~ 365 (533)
+++.++... ...+++--|||....++-....+..+-+.+...+ + .+..-+..+.|.+. ..
T Consensus 432 ~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~D-G-SPs~~K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 432 AQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTID-G-SPSSEKLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred HHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEec-C-CCCccceEEEeCCCCCCcchhhhhh
Confidence 333332222 4678899999997777655555444433332211 1 22234566677442 12
Q ss_pred hHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhc---C----CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q 009512 366 KKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT---G----MKALSIHGEKPMKERREIMRSFLVGEVPVIVA 438 (533)
Q Consensus 366 k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~---~----~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLva 438 (533)
+......++.+....+-++|.||.+++-|+.+....+... + ..+..|.||...++|+.+....-.|++.-+||
T Consensus 510 ~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIa 589 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIA 589 (1034)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEe
Confidence 3333334444444556799999999999998877665211 1 23568899999999999999999999999999
Q ss_pred eccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEe--cCcCHHHHHHHHHHHHhcCCCC
Q 009512 439 TGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFV--NEENKNLFQELVDILKSSGAGI 508 (533)
Q Consensus 439 T~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~--~~~~~~~~~~l~~~l~~~~~~~ 508 (533)
|+.++-||||..++.|++.++|.|+..+.|+.|||||..++..++.+. .+-|..++..-..++...+.++
T Consensus 590 TNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~pN~EL 661 (1034)
T KOG4150|consen 590 TNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSPNEEL 661 (1034)
T ss_pred cchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCCccee
Confidence 999999999999999999999999999999999999998887665554 4556666665555555554443
No 129
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.1e-17 Score=177.75 Aligned_cols=330 Identities=17% Similarity=0.190 Sum_probs=227.3
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009512 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 154 g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
|. .|+++|.-+--.+..|+ |+.+.||-|||+++.+|++-..+. |..|-|++...-||..=.+|+..+
T Consensus 76 G~-r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~----------GkgVhVVTvNdYLA~RDae~mg~v 142 (925)
T PRK12903 76 GK-RPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT----------GKGVIVSTVNEYLAERDAEEMGKV 142 (925)
T ss_pred CC-CcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc----------CCceEEEecchhhhhhhHHHHHHH
Confidence 54 78899988887777775 899999999999999999766553 555888999999999888899999
Q ss_pred hcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcC------CCCCCCeeEEEEeccchhhh-c------
Q 009512 234 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQ-R------ 299 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~i~~vVvDEah~~~~-~------ 299 (533)
...+|+.+.++..+......... -.++|+++|...| .++|+.+ ..-...+.+.||||+|.++= .
T Consensus 143 y~fLGLsvG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLI 220 (925)
T PRK12903 143 FNFLGLSVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLI 220 (925)
T ss_pred HHHhCCceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCccc
Confidence 99999999988877655443222 3489999999887 4445432 11246688999999998751 0
Q ss_pred ---------chHHHHHHHHHhCC--------CC-----------------------------------------------
Q 009512 300 ---------GFRDQVMQIFRAIS--------LP----------------------------------------------- 315 (533)
Q Consensus 300 ---------~~~~~i~~i~~~~~--------~~----------------------------------------------- 315 (533)
.+...+..+...+. ..
T Consensus 221 ISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd 300 (925)
T PRK12903 221 ISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKED 300 (925)
T ss_pred ccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcC
Confidence 01122222222221 01
Q ss_pred --------------------------------------------------------------cEEEecccCcHHHHHHHH
Q 009512 316 --------------------------------------------------------------QILMYSATISQEVEKMSS 333 (533)
Q Consensus 316 --------------------------------------------------------------q~i~~SAT~~~~~~~~~~ 333 (533)
++-+||+|...+-.++..
T Consensus 301 ~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~ 380 (925)
T PRK12903 301 VEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFID 380 (925)
T ss_pred CceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHH
Confidence 233344444333334444
Q ss_pred hhcCCeEEEEeCCCCCCCccce-EEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEE
Q 009512 334 SISKDIVVVSVGKPNMPNKAVK-QLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSI 412 (533)
Q Consensus 334 ~~~~~~~~i~~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~i 412 (533)
.+..+.+.+.... +..... ....+.....|...+++.+......+.|+||.|.|.+.++.|+..|. ..|++...+
T Consensus 381 iY~l~Vv~IPTnk---P~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~-~~gi~h~vL 456 (925)
T PRK12903 381 IYNMRVNVVPTNK---PVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLL-EANIPHTVL 456 (925)
T ss_pred HhCCCEEECCCCC---CeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHH-HCCCCceee
Confidence 4433333332211 111111 11344556677788888777766678899999999999999999998 789999888
Q ss_pred cCCCCHHHHHHHHHHHhcC-CCcEEEEeccccccCCCCCcc--------EEEEcCCCCCHhHHHHhhcccCCCCCccEEE
Q 009512 413 HGEKPMKERREIMRSFLVG-EVPVIVATGILGRGVELLGVR--------QVIIFDMPNSIKEYVHQIGRASQMGDEGTAI 483 (533)
Q Consensus 413 h~~~~~~~r~~~~~~f~~g-~~~VLvaT~~~~~Gldi~~v~--------~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~ 483 (533)
++.-. +++.-+-. .+| .-.|.|||++++||.||.--. +||....|.|-.--.|-.||+||.|.+|.+-
T Consensus 457 NAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~ 533 (925)
T PRK12903 457 NAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESR 533 (925)
T ss_pred cccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcce
Confidence 88643 34333332 556 457999999999999986322 8999999999999999999999999999998
Q ss_pred EEecCcCHHHH-----HHHHHHHHhcC
Q 009512 484 VFVNEENKNLF-----QELVDILKSSG 505 (533)
Q Consensus 484 ~l~~~~~~~~~-----~~l~~~l~~~~ 505 (533)
.|++-+|.-+- ..+.+.+...+
T Consensus 534 f~lSLeD~L~r~f~~~~ri~~~~~~l~ 560 (925)
T PRK12903 534 FFISLDDQLFRRFSNFDKIKEAFKKLG 560 (925)
T ss_pred EEEecchHHHHHhCCHHHHHHHHHhcC
Confidence 88887654221 34555555544
No 130
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.81 E-value=9.3e-18 Score=177.79 Aligned_cols=320 Identities=15% Similarity=0.148 Sum_probs=199.5
Q ss_pred CCCHHHHHHHHHHh---CCC-------cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009512 157 MPTPVQMQAIPSAL---SGK-------SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~---~g~-------~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
.++|||.+++..+. .|. ..|+.-.+|+|||+.... .+..++.+.+... ..-.++|||+|. .|+..|
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~Is-flwtlLrq~P~~~--~~~~k~lVV~P~-sLv~nW 313 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCIS-FIWTLLRQFPQAK--PLINKPLVVAPS-SLVNNW 313 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHH-HHHHHHHhCcCcc--ccccccEEEccH-HHHHHH
Confidence 57899999998876 333 367788999999997544 4444443311100 011679999997 677889
Q ss_pred HHHHHHHhcCCCCeEEEEEcCCch--HHHHHHH-----HcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc
Q 009512 227 EEQAKLLGKGLPFKTALVVGGDAM--ARQVYRI-----QQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~gg~~~--~~~~~~l-----~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~ 299 (533)
++++.++.....+....++|+... .....-+ .-...|++.+++.+.+.... +.+..++++|+||.|++-+.
T Consensus 314 kkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 314 KKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCccch
Confidence 999999976545666677776653 0100001 11245778899888655543 34567899999999998643
Q ss_pred chHHHHHHHHHhCCCCcEEEecccCcH----------------------------------------------------H
Q 009512 300 GFRDQVMQIFRAISLPQILMYSATISQ----------------------------------------------------E 327 (533)
Q Consensus 300 ~~~~~i~~i~~~~~~~q~i~~SAT~~~----------------------------------------------------~ 327 (533)
...+...+..+.-++.|++|+|+-. +
T Consensus 392 --~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~e 469 (776)
T KOG0390|consen 392 --DSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQE 469 (776)
T ss_pred --hhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHH
Confidence 5667778888888899999999410 0
Q ss_pred HHHHHHhh------------cCCeEEEEe--CCC-----------CC---------CCcc--------------------
Q 009512 328 VEKMSSSI------------SKDIVVVSV--GKP-----------NM---------PNKA-------------------- 353 (533)
Q Consensus 328 ~~~~~~~~------------~~~~~~i~~--~~~-----------~~---------~~~~-------------------- 353 (533)
+..+...+ +.....+.+ ... .. +...
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~ 549 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKT 549 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccc
Confidence 11111111 000000000 000 00 0000
Q ss_pred -----c------------eEEEEEecchhhHHHHHHHHHhcc-CCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCC
Q 009512 354 -----V------------KQLAIWVESNKKKQKLFDILMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGE 415 (533)
Q Consensus 354 -----i------------~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~ 415 (533)
. ...........+...|..++.... ....++++..+-+...+.+....+ ..|+.+..+||.
T Consensus 550 ~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~-~~g~~~~rLdG~ 628 (776)
T KOG0390|consen 550 EKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCR-WRGYEVLRLDGK 628 (776)
T ss_pred cccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHh-hcCceEEEEcCC
Confidence 0 000000000112233333332211 111233333444445555555555 669999999999
Q ss_pred CCHHHHHHHHHHHhcC--CCcE-EEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEE
Q 009512 416 KPMKERREIMRSFLVG--EVPV-IVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVF 485 (533)
Q Consensus 416 ~~~~~r~~~~~~f~~g--~~~V-LvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l 485 (533)
|+..+|+.+++.|.+. ...| |.+|.+.+.||++-+++-||.||++|+++.-.|.++|+.|.|++..|+++
T Consensus 629 ~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 629 TSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred CchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 9999999999999984 3244 66778889999999999999999999999999999999999998776655
No 131
>COG4889 Predicted helicase [General function prediction only]
Probab=99.80 E-value=2e-19 Score=186.46 Aligned_cols=359 Identities=18% Similarity=0.238 Sum_probs=217.9
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCC----CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCC
Q 009512 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSG----KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQ 208 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g----~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~ 208 (533)
...+|+.+.. .++..++.-..-.+|+|+|++|+.+...| ...-+.+.+|+|||...+ -+...+.
T Consensus 138 s~IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala---------- 205 (1518)
T COG4889 138 SPIDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALA---------- 205 (1518)
T ss_pred CCCChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHh----------
Confidence 3357776654 56667777677789999999999998854 234556679999998754 3333332
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchH--------------------H---HHHHH--HcCCce
Q 009512 209 KNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA--------------------R---QVYRI--QQGVEL 263 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~--------------------~---~~~~l--~~~~~I 263 (533)
..++|+|+|+..|..|..++...- +.+.++...+.+..... . .+... ..+--|
T Consensus 206 -~~~iL~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~v 283 (1518)
T COG4889 206 -AARILFLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTV 283 (1518)
T ss_pred -hhheEeecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEE
Confidence 256999999999999965544432 23455655555432211 1 11111 123569
Q ss_pred eecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC------CCCcEEEecccCc---HHH------
Q 009512 264 IVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI------SLPQILMYSATIS---QEV------ 328 (533)
Q Consensus 264 iv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~------~~~q~i~~SAT~~---~~~------ 328 (533)
|++|++.+..+-......+..+++||+|||||-..-.....=..-+.+. +..+.+.|+||+. ...
T Consensus 284 vFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd 363 (1518)
T COG4889 284 VFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKD 363 (1518)
T ss_pred EEEcccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhh
Confidence 9999999999888887889999999999999854211111001111111 2335567888862 111
Q ss_pred ------------------------HHHHHhhcCCeE--EEEeCCCCCCCccceEEEEEecch------hhHHHHHHHHHh
Q 009512 329 ------------------------EKMSSSISKDIV--VVSVGKPNMPNKAVKQLAIWVESN------KKKQKLFDILMS 376 (533)
Q Consensus 329 ------------------------~~~~~~~~~~~~--~i~~~~~~~~~~~i~~~~~~~~~~------~k~~~l~~~l~~ 376 (533)
+...+.++.++- ++.+...... ........-.... .+.-....-|..
T Consensus 364 ~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~-~~~~~~~~~~~~~L~~dd~~kIvG~wnGlak 442 (1518)
T COG4889 364 HSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIA-GVLQSVLSGPSKGLALDDVSKIVGCWNGLAK 442 (1518)
T ss_pred ccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhh-hhhhhhccCcccccchhhhhhhhhhhhhhhh
Confidence 112222333322 1222111111 0011111001101 111111111111
Q ss_pred -ccCC------------CCCEEEEEcCcccHHHHHHHHH-----------h---hcCCeEEEEcCCCCHHHHHHHHHH--
Q 009512 377 -KQHF------------TPPAVVYVGSRLGADLLSNAIS-----------V---TTGMKALSIHGEKPMKERREIMRS-- 427 (533)
Q Consensus 377 -~~~~------------~~~~lIF~~s~~~~~~l~~~l~-----------~---~~~~~~~~ih~~~~~~~r~~~~~~-- 427 (533)
.... -.+.|-||.+.++...++..+. + ...+.+..+.|.|+..+|...+..
T Consensus 443 r~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~ 522 (1518)
T COG4889 443 RNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKN 522 (1518)
T ss_pred hccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccC
Confidence 1100 1267889999888777766553 1 123345567799999999554432
Q ss_pred -HhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCC---ccEEEEEe-------------cCcC
Q 009512 428 -FLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD---EGTAIVFV-------------NEEN 490 (533)
Q Consensus 428 -f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~---~g~~~~l~-------------~~~~ 490 (533)
|...+++||--...+++|+|+|.++.||+|++-.|+-+.+|.+||+-|... -|+.++=+ ++.+
T Consensus 523 ~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIalpegi~p~~~l~~n~n 602 (1518)
T COG4889 523 TFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIALPEGIKPLDELVNNTN 602 (1518)
T ss_pred CCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEeccCCCCCchHHHhcCcc
Confidence 345689999889999999999999999999999999999999999999632 25444322 3456
Q ss_pred HHHHHHHHHHHHhcCC
Q 009512 491 KNLFQELVDILKSSGA 506 (533)
Q Consensus 491 ~~~~~~l~~~l~~~~~ 506 (533)
....+++++.|+.+..
T Consensus 603 Fk~VWqVlnALRShD~ 618 (1518)
T COG4889 603 FKNVWQVLKALRSHDE 618 (1518)
T ss_pred HHHHHHHHHHHHhcCH
Confidence 7788999999988755
No 132
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.80 E-value=1.9e-17 Score=177.00 Aligned_cols=276 Identities=17% Similarity=0.190 Sum_probs=185.6
Q ss_pred cCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 153 AGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 153 ~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|. .|+++|.-+.-.+.. .-|+.+.||.|||+++.+|++-..+. |..|.|++++..||.+-.+|+..
T Consensus 73 lG~-r~ydvQlig~l~L~~--G~IaEm~TGEGKTL~a~l~ayl~aL~----------G~~VhVvT~NdyLA~RD~e~m~p 139 (870)
T CHL00122 73 LGL-RHFDVQLIGGLVLND--GKIAEMKTGEGKTLVATLPAYLNALT----------GKGVHIVTVNDYLAKRDQEWMGQ 139 (870)
T ss_pred hCC-CCCchHhhhhHhhcC--CccccccCCCCchHHHHHHHHHHHhc----------CCceEEEeCCHHHHHHHHHHHHH
Confidence 355 588888877655544 46999999999999999999755442 56699999999999999999999
Q ss_pred HhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcC------CCCCCCeeEEEEeccchhh-hc-----
Q 009512 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCML-QR----- 299 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~i~~vVvDEah~~~-~~----- 299 (533)
+...+|+.+.++.++.+....... -.++|+.+|...| .++++.+ ......+.+.|+||+|.++ |.
T Consensus 140 vy~~LGLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPL 217 (870)
T CHL00122 140 IYRFLGLTVGLIQEGMSSEERKKN--YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPL 217 (870)
T ss_pred HHHHcCCceeeeCCCCChHHHHHh--cCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCce
Confidence 999999999998887776553222 3489999999765 2333322 1124568899999999875 00
Q ss_pred ----------chHHHHHHHHHhCCC-------------------------------------------------------
Q 009512 300 ----------GFRDQVMQIFRAISL------------------------------------------------------- 314 (533)
Q Consensus 300 ----------~~~~~i~~i~~~~~~------------------------------------------------------- 314 (533)
........+...+..
T Consensus 218 iISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~ 297 (870)
T CHL00122 218 IISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFK 297 (870)
T ss_pred eccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhc
Confidence 011111111111100
Q ss_pred --------------------------------------------------------------CcEEEecccCcHHHHHHH
Q 009512 315 --------------------------------------------------------------PQILMYSATISQEVEKMS 332 (533)
Q Consensus 315 --------------------------------------------------------------~q~i~~SAT~~~~~~~~~ 332 (533)
.++.+||+|...+-.++.
T Consensus 298 d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~ 377 (870)
T CHL00122 298 NVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFE 377 (870)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHH
Confidence 034556666655555555
Q ss_pred HhhcCCeEEEEeCCCCCCCccce-EEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEE
Q 009512 333 SSISKDIVVVSVGKPNMPNKAVK-QLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALS 411 (533)
Q Consensus 333 ~~~~~~~~~i~~~~~~~~~~~i~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ 411 (533)
..+..+.+.+.... +..... ....+.....|...+++-+......+.|+||-+.|.+..+.++..|. ..|++...
T Consensus 378 ~iY~l~vv~IPtnk---p~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~-~~gi~h~v 453 (870)
T CHL00122 378 KIYNLEVVCIPTHR---PMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLK-EYRLPHQL 453 (870)
T ss_pred HHhCCCEEECCCCC---CccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHH-HcCCccce
Confidence 55555544443222 211111 12334555667777887777776778899999999999999999998 88999999
Q ss_pred EcCCCCHHHHH-HHHHHHhcC-CCcEEEEeccccccCCCC
Q 009512 412 IHGEKPMKERR-EIMRSFLVG-EVPVIVATGILGRGVELL 449 (533)
Q Consensus 412 ih~~~~~~~r~-~~~~~f~~g-~~~VLvaT~~~~~Gldi~ 449 (533)
+++.-...+++ .++.. +| .-.|.|||++++||.||.
T Consensus 454 LNAk~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 454 LNAKPENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred eeCCCccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 99864222222 23322 46 456999999999999974
No 133
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.79 E-value=1.2e-18 Score=171.12 Aligned_cols=311 Identities=16% Similarity=0.180 Sum_probs=208.2
Q ss_pred CCCCHHHHHHHHHHh-CC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 156 DMPTPVQMQAIPSAL-SG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~-~g--~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
..++|+|..++..++ +| |+.+|..|+|+|||++-.-++. --++++|+||.+-..+.||..+++.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-------------tikK~clvLcts~VSVeQWkqQfk~ 367 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-------------TIKKSCLVLCTSAVSVEQWKQQFKQ 367 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-------------eecccEEEEecCccCHHHHHHHHHh
Confidence 468999999999998 33 6889999999999987443321 1245699999999999999999999
Q ss_pred HhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcC--------CCCCCCeeEEEEeccchhhhcchHHH
Q 009512 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH--------DIELDDIRMFVLDEVDCMLQRGFRDQ 304 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~--------~~~l~~i~~vVvDEah~~~~~~~~~~ 304 (533)
+...-+-.+ +.+..+.. .....++.|+|+|+.++..--.+. .+.-..++++++||+|.+...-|+..
T Consensus 368 wsti~d~~i-~rFTsd~K----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRV 442 (776)
T KOG1123|consen 368 WSTIQDDQI-CRFTSDAK----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRV 442 (776)
T ss_pred hcccCccce-EEeecccc----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHH
Confidence 975544333 33333222 223467899999997763221110 12235688999999998877667766
Q ss_pred HHHHHHhCCCCcEEEecccCcHHHHHHHHh---------------h--cCCeEEEEeCCCCC-----------CCccceE
Q 009512 305 VMQIFRAISLPQILMYSATISQEVEKMSSS---------------I--SKDIVVVSVGKPNM-----------PNKAVKQ 356 (533)
Q Consensus 305 i~~i~~~~~~~q~i~~SAT~~~~~~~~~~~---------------~--~~~~~~i~~~~~~~-----------~~~~i~~ 356 (533)
+..+-.+ --+++|||+-++-.++... + ......+...+.+- ....-+.
T Consensus 443 lsiv~aH----cKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 443 LSIVQAH----CKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred HHHHHHH----hhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 5555444 4579999975432222110 0 01111111111111 1112233
Q ss_pred EEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcE
Q 009512 357 LAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVPV 435 (533)
Q Consensus 357 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~V 435 (533)
...++.++.|.+..--++.-+...+.++|||....-.....+-.|. . ..++|..+|.+|..|++.|+.+ .++.
T Consensus 519 ~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~----K--pfIYG~Tsq~ERm~ILqnFq~n~~vNT 592 (776)
T KOG1123|consen 519 MLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLG----K--PFIYGPTSQNERMKILQNFQTNPKVNT 592 (776)
T ss_pred heeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcC----C--ceEECCCchhHHHHHHHhcccCCccce
Confidence 4455556666665555555555677899999988766666655443 2 3689999999999999999976 7888
Q ss_pred EEEeccccccCCCCCccEEEEcCCC-CCHhHHHHhhcccCCCCC------ccEEEEEecCcCHHHH
Q 009512 436 IVATGILGRGVELLGVRQVIIFDMP-NSIKEYVHQIGRASQMGD------EGTAIVFVNEENKNLF 494 (533)
Q Consensus 436 LvaT~~~~~Gldi~~v~~VI~~~~p-~s~~~y~qriGR~gR~g~------~g~~~~l~~~~~~~~~ 494 (533)
++-..+....+|+|.++++|..+.. .|-.+-.||+||..|+.+ ....+.+++.+..+++
T Consensus 593 IFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 593 IFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred EEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHH
Confidence 9999999999999999999988754 467888999999998743 1345566666544433
No 134
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.79 E-value=7.1e-17 Score=181.67 Aligned_cols=136 Identities=9% Similarity=0.156 Sum_probs=97.4
Q ss_pred HHHHHHHHhcc-CCCCCEEEEEcCcccHHHHHHHHHhhcCC-eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q 009512 368 QKLFDILMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGM-KALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRG 445 (533)
Q Consensus 368 ~~l~~~l~~~~-~~~~~~lIF~~s~~~~~~l~~~l~~~~~~-~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~G 445 (533)
..+.+.+.... ..++++|||++|....+.++..|...... ....+.-+++...|..+++.|+.++-.||++|+.+.+|
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEG 817 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEG 817 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCc
Confidence 44555444432 34568999999999999999998733221 12223334444468899999999988999999999999
Q ss_pred CCCCC--ccEEEEcCCCC------------------------------CHhHHHHhhcccCCCCCccEEEEEecCc--CH
Q 009512 446 VELLG--VRQVIIFDMPN------------------------------SIKEYVHQIGRASQMGDEGTAIVFVNEE--NK 491 (533)
Q Consensus 446 ldi~~--v~~VI~~~~p~------------------------------s~~~y~qriGR~gR~g~~g~~~~l~~~~--~~ 491 (533)
+|+|+ +++||+..+|. .+..+.|.+||.-|...+.-+++++++. .+
T Consensus 818 VD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k 897 (928)
T PRK08074 818 IDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTT 897 (928)
T ss_pred cccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccc
Confidence 99997 47888866552 2234578899999987654467777765 67
Q ss_pred HHHHHHHHHHHh
Q 009512 492 NLFQELVDILKS 503 (533)
Q Consensus 492 ~~~~~l~~~l~~ 503 (533)
.|-+.|++.|..
T Consensus 898 ~Yg~~~l~sLP~ 909 (928)
T PRK08074 898 SYGKYFLESLPT 909 (928)
T ss_pred hHHHHHHHhCCC
Confidence 777888877754
No 135
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.78 E-value=1.7e-17 Score=171.45 Aligned_cols=320 Identities=16% Similarity=0.192 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~----~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
++-++|.-.++++. .+-+.|+...+|-|||.. .++.+..+... +..+.-|||||...| ..|..++.+
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~-------g~~gpHLVVvPsSTl-eNWlrEf~k 469 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQI-------GNPGPHLVVVPSSTL-ENWLREFAK 469 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHc-------CCCCCcEEEecchhH-HHHHHHHHH
Confidence 47899999999975 666889999999999975 44455555541 334558999999888 558888888
Q ss_pred HhcCCCCeEEEEEcCCchHHHHHHH-Hc---CCceeecChHHHHHHHHc-CCCCCCCeeEEEEeccchhhhcchHHHHHH
Q 009512 233 LGKGLPFKTALVVGGDAMARQVYRI-QQ---GVELIVGTPGRLIDLLMK-HDIELDDIRMFVLDEVDCMLQRGFRDQVMQ 307 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l-~~---~~~Iiv~Tp~~l~~~l~~-~~~~l~~i~~vVvDEah~~~~~~~~~~i~~ 307 (533)
|+.. +++...+|...-..++... .. +++|+++|+.....--.. ..+.-.++.++|+||+|.+-++..+ -+..
T Consensus 470 wCPs--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~Se-Ry~~ 546 (941)
T KOG0389|consen 470 WCPS--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSE-RYKH 546 (941)
T ss_pred hCCc--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchH-HHHH
Confidence 8764 5777777776555444432 22 489999998766311110 1122346789999999998776522 2222
Q ss_pred HHHhCCCCcEEEecccCcH----------------------------------------------H-H------------
Q 009512 308 IFRAISLPQILMYSATISQ----------------------------------------------E-V------------ 328 (533)
Q Consensus 308 i~~~~~~~q~i~~SAT~~~----------------------------------------------~-~------------ 328 (533)
+ -.++....|++|+|+-. + +
T Consensus 547 L-M~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 547 L-MSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred h-ccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 2 22356677888888310 0 0
Q ss_pred HH----HHHhhcCCeEEEEe------------------------CCCCCCCcc--c--------------eEEE------
Q 009512 329 EK----MSSSISKDIVVVSV------------------------GKPNMPNKA--V--------------KQLA------ 358 (533)
Q Consensus 329 ~~----~~~~~~~~~~~i~~------------------------~~~~~~~~~--i--------------~~~~------ 358 (533)
+. ....+....-.+.. ...+..... + ++++
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~ 705 (941)
T KOG0389|consen 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLR 705 (941)
T ss_pred HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHH
Confidence 00 00000000000000 000000000 0 0000
Q ss_pred -------------------------------------------------EEecchhhHHHHHHHHHhccCCCCCEEEEEc
Q 009512 359 -------------------------------------------------IWVESNKKKQKLFDILMSKQHFTPPAVVYVG 389 (533)
Q Consensus 359 -------------------------------------------------~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~ 389 (533)
...-...|...|-.+|......+.++|||..
T Consensus 706 ~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQ 785 (941)
T KOG0389|consen 706 KMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQ 785 (941)
T ss_pred HHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeH
Confidence 0011234667777777777777889999999
Q ss_pred CcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEEeccccccCCCCCccEEEEcCCCCCHhHHH
Q 009512 390 SRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVP-VIVATGILGRGVELLGVRQVIIFDMPNSIKEYV 467 (533)
Q Consensus 390 s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~-VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~ 467 (533)
.-...+-|.-.|. ..++....+.|...-.+|+.+++.|... .+. .|++|...+-|||+..+++||++|+..++-+-.
T Consensus 786 FTqmLDILE~~L~-~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~ 864 (941)
T KOG0389|consen 786 FTQMLDILEVVLD-TLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHHH-hcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccc
Confidence 9999999988888 8999999999999999999999999986 344 489999999999999999999999999998889
Q ss_pred HhhcccCCCCCcc--EEEEEecCcC
Q 009512 468 HQIGRASQMGDEG--TAIVFVNEEN 490 (533)
Q Consensus 468 qriGR~gR~g~~g--~~~~l~~~~~ 490 (533)
|.--|+.|.|+.. +++.|++...
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCc
Confidence 9999999999864 5666676653
No 136
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.77 E-value=7.5e-16 Score=163.20 Aligned_cols=121 Identities=18% Similarity=0.210 Sum_probs=88.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhc----CCCcEEEEeccccccCCC-------
Q 009512 380 FTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLV----GEVPVIVATGILGRGVEL------- 448 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~----g~~~VLvaT~~~~~Gldi------- 448 (533)
.++++||.+.|....+.++..|.....+++ .+.|+.+ .+..+++.|++ |.-.||++|+.+.+|+|+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~-l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEI-VIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCE-EEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 456899999999999999999975555554 3555543 45678888987 478999999999999999
Q ss_pred ---CCccEEEEcCCCC-------------------------CHhHHHHhhcccCCCCCc--cEEEEEecC-cCHHHHHHH
Q 009512 449 ---LGVRQVIIFDMPN-------------------------SIKEYVHQIGRASQMGDE--GTAIVFVNE-ENKNLFQEL 497 (533)
Q Consensus 449 ---~~v~~VI~~~~p~-------------------------s~~~y~qriGR~gR~g~~--g~~~~l~~~-~~~~~~~~l 497 (533)
..+++||+..+|. ....+.|-+||.-|.... --.++++++ -.+.+.+.+
T Consensus 546 ~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~ 625 (636)
T TIGR03117 546 DKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESW 625 (636)
T ss_pred CCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHH
Confidence 2488899866652 123457889999998664 334455554 456677777
Q ss_pred HHHHHh
Q 009512 498 VDILKS 503 (533)
Q Consensus 498 ~~~l~~ 503 (533)
.+..+.
T Consensus 626 ~~~~~~ 631 (636)
T TIGR03117 626 QESVKT 631 (636)
T ss_pred HHHHHH
Confidence 665553
No 137
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=9e-17 Score=157.73 Aligned_cols=327 Identities=17% Similarity=0.168 Sum_probs=205.5
Q ss_pred ccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHH--HHHhhhhcccCCCCCc
Q 009512 134 ILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVIS--QCANIRLHHSQNQKNP 211 (533)
Q Consensus 134 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~--~l~~~~~~~~~~~~~~ 211 (533)
+..|...+.++...+.|++.---.-+..+.+-+..+..++-+++.|.||||||+ .+|-+. .... ...
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~---------~~~ 92 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELS---------HLT 92 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHh---------hcc
Confidence 677888888888888887764333444555556666688889999999999998 444332 2221 113
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEe
Q 009512 212 LAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLD 291 (533)
Q Consensus 212 ~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvD 291 (533)
.+....|.|.-|.++..... ..+++...--+|..-..+.. ...+.-+-+||.++|++-...... +.++++||+|
T Consensus 93 ~v~CTQprrvaamsva~RVa---dEMDv~lG~EVGysIrfEdC--~~~~T~Lky~tDgmLlrEams~p~-l~~y~viiLD 166 (699)
T KOG0925|consen 93 GVACTQPRRVAAMSVAQRVA---DEMDVTLGEEVGYSIRFEDC--TSPNTLLKYCTDGMLLREAMSDPL-LGRYGVIILD 166 (699)
T ss_pred ceeecCchHHHHHHHHHHHH---HHhccccchhcccccccccc--CChhHHHHHhcchHHHHHHhhCcc-cccccEEEec
Confidence 36677799988887654332 22222222222211111100 001112347899999888877664 8899999999
Q ss_pred ccchh--hhcchHHHHHHHHHhCCCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHH
Q 009512 292 EVDCM--LQRGFRDQVMQIFRAISLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQK 369 (533)
Q Consensus 292 Eah~~--~~~~~~~~i~~i~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~ 369 (533)
|||.- ........+..++.+-++.++|.+|||+.. .++...+...|+.-..+ ..+ ++.++..-...+....
T Consensus 167 eahERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a--~Kfq~yf~n~Pll~vpg--~~P---vEi~Yt~e~erDylEa 239 (699)
T KOG0925|consen 167 EAHERTLATDILMGLLKEVVRNRPDLKLVVMSATLDA--EKFQRYFGNAPLLAVPG--THP---VEIFYTPEPERDYLEA 239 (699)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhCCCceEEEeecccch--HHHHHHhCCCCeeecCC--CCc---eEEEecCCCChhHHHH
Confidence 99952 112233344555555589999999999864 45555555555433222 111 2222222223333333
Q ss_pred HHHHHHh--ccCCCCCEEEEEcCcccHHHHHHHHHh--------hcCCeEEEEcCCCCHHHHHHHHHHHh---cC--CCc
Q 009512 370 LFDILMS--KQHFTPPAVVYVGSRLGADLLSNAISV--------TTGMKALSIHGEKPMKERREIMRSFL---VG--EVP 434 (533)
Q Consensus 370 l~~~l~~--~~~~~~~~lIF~~s~~~~~~l~~~l~~--------~~~~~~~~ih~~~~~~~r~~~~~~f~---~g--~~~ 434 (533)
.+..+.+ .....+-+|||..+.++.+..++.+.. .....+..+| ..++..+++... +| ..+
T Consensus 240 airtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~Rk 315 (699)
T KOG0925|consen 240 AIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRK 315 (699)
T ss_pred HHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccce
Confidence 3222222 122356799999999999998888862 1235677777 223333333222 12 467
Q ss_pred EEEEeccccccCCCCCccEEEEcC------------------CCCCHhHHHHhhcccCCCCCccEEEEEecCc
Q 009512 435 VIVATGILGRGVELLGVRQVIIFD------------------MPNSIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 435 VLvaT~~~~~Gldi~~v~~VI~~~------------------~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~ 489 (533)
|+|+|.+++..+.++++.+||+-+ .|.|-..-.||.||+||. .+|.|+.+++++
T Consensus 316 vVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 316 VVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 999999999999999999999844 367888999999999997 799999999864
No 138
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.76 E-value=1.1e-17 Score=144.73 Aligned_cols=120 Identities=33% Similarity=0.597 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 009512 365 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGR 444 (533)
Q Consensus 365 ~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~ 444 (533)
.|...+..++......++++||||++...++.+++.|. ..+..+..+||+++..+|..+++.|.+|...||++|.++++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLR-KPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHH-hcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 67778888887765567799999999999999999998 57889999999999999999999999999999999999999
Q ss_pred cCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEE
Q 009512 445 GVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVF 485 (533)
Q Consensus 445 Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l 485 (533)
|+|+|.+++||+++.|++..+|.|++||++|.|+.|.++++
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999988764
No 139
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=5.6e-16 Score=165.46 Aligned_cols=274 Identities=17% Similarity=0.194 Sum_probs=182.5
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009512 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.|+++|.-+--++..|+ |+.+.||-|||+++.+|++-..+. |..+-|++++..||..=.+|+..+...
T Consensus 85 r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~----------GkgVhVVTvNdYLA~RDae~m~~vy~~ 152 (939)
T PRK12902 85 RHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALT----------GKGVHVVTVNDYLARRDAEWMGQVHRF 152 (939)
T ss_pred CcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhc----------CCCeEEEeCCHHHHHhHHHHHHHHHHH
Confidence 67788887776666664 899999999999999999876654 556999999999999999999999999
Q ss_pred CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHH-----HHHHHc--CCCCCCCeeEEEEeccchhh-hc---------
Q 009512 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRL-----IDLLMK--HDIELDDIRMFVLDEVDCML-QR--------- 299 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-----~~~l~~--~~~~l~~i~~vVvDEah~~~-~~--------- 299 (533)
+|+.+.++.++.+... .+..-.++|+++|+..| .+.+.. .......+.+.||||+|.++ |.
T Consensus 153 LGLtvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg 230 (939)
T PRK12902 153 LGLSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISG 230 (939)
T ss_pred hCCeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccC
Confidence 9999999887765544 22334699999999888 333322 12235678899999999875 10
Q ss_pred ------chHHHHHHHHHhCC---------------CC-------------------------------------------
Q 009512 300 ------GFRDQVMQIFRAIS---------------LP------------------------------------------- 315 (533)
Q Consensus 300 ------~~~~~i~~i~~~~~---------------~~------------------------------------------- 315 (533)
........+...+. ..
T Consensus 231 ~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf 310 (939)
T PRK12902 231 QVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELF 310 (939)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHH
Confidence 01111111111110 01
Q ss_pred -----------------------------------------------------------------cEEEecccCcHHHHH
Q 009512 316 -----------------------------------------------------------------QILMYSATISQEVEK 330 (533)
Q Consensus 316 -----------------------------------------------------------------q~i~~SAT~~~~~~~ 330 (533)
++.+||+|...+..+
T Consensus 311 ~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~E 390 (939)
T PRK12902 311 IKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVE 390 (939)
T ss_pred hcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHH
Confidence 233444444333344
Q ss_pred HHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEE
Q 009512 331 MSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKAL 410 (533)
Q Consensus 331 ~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~ 410 (533)
+...+..+.+.+....+.... -.....+.....|...+.+-+......+.|+||-+.|.+..+.++..|. ..|++..
T Consensus 391 f~~iY~l~Vv~IPTnkP~~R~--d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~-~~gi~h~ 467 (939)
T PRK12902 391 FEKTYKLEVTVIPTNRPRRRQ--DWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQ-EQGIPHN 467 (939)
T ss_pred HHHHhCCcEEEcCCCCCeeee--cCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHH-HcCCchh
Confidence 444444343333221111100 0112234455677778887777766778899999999999999999998 8899998
Q ss_pred EEcCCCCHHHHHH-HHHHHhcC-CCcEEEEeccccccCCCC
Q 009512 411 SIHGEKPMKERRE-IMRSFLVG-EVPVIVATGILGRGVELL 449 (533)
Q Consensus 411 ~ih~~~~~~~r~~-~~~~f~~g-~~~VLvaT~~~~~Gldi~ 449 (533)
.+++.-...+++. ++. .+| .-.|-|||++++||-||.
T Consensus 468 vLNAk~~~~~~EA~IIa--~AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 468 LLNAKPENVEREAEIVA--QAGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred eeeCCCcchHhHHHHHH--hcCCCCcEEEeccCCCCCcCEe
Confidence 8988632223332 332 256 456899999999999974
No 140
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.74 E-value=8.8e-17 Score=172.46 Aligned_cols=325 Identities=16% Similarity=0.177 Sum_probs=209.2
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~----~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.++.||++.++++. -+-+.|+|..+|-|||+..+--+.......+ ...........||+||. .|+--|..++++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~-s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRR-SESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhc-ccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 45789999998864 3457899999999999875433332222211 11111122338999997 788889999998
Q ss_pred HhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC
Q 009512 233 LGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 233 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~ 312 (533)
|... +++...+|+.......+.-.+..+|+|++++.+.+-+.. +.-.++-|+|+||-|-+-+. ...+....+.+
T Consensus 1053 f~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL 1126 (1549)
T KOG0392|consen 1053 FFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQL 1126 (1549)
T ss_pred hcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHH
Confidence 8765 455556665544443333334579999999888532221 11124568999999987543 45555666666
Q ss_pred CCCcEEEecccCc-------------------------------------------------------------------
Q 009512 313 SLPQILMYSATIS------------------------------------------------------------------- 325 (533)
Q Consensus 313 ~~~q~i~~SAT~~------------------------------------------------------------------- 325 (533)
.....+.+|+|+-
T Consensus 1127 ~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRR 1206 (1549)
T KOG0392|consen 1127 RANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRR 1206 (1549)
T ss_pred hhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5666677788820
Q ss_pred ----------HH------------HHHHHHhhcCC---eEEEEeCCCCCCCc----cceE-------------EEEE---
Q 009512 326 ----------QE------------VEKMSSSISKD---IVVVSVGKPNMPNK----AVKQ-------------LAIW--- 360 (533)
Q Consensus 326 ----------~~------------~~~~~~~~~~~---~~~i~~~~~~~~~~----~i~~-------------~~~~--- 360 (533)
+. -.++.+.+... -+...+........ .+.| .+..
T Consensus 1207 lKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~h 1286 (1549)
T KOG0392|consen 1207 LKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVH 1286 (1549)
T ss_pred HHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCc
Confidence 00 00011111000 00000000000000 0000 0000
Q ss_pred -------------------ecchhhHHHHHHHHHhccC--------------CCCCEEEEEcCcccHHHHHHHHHhhc--
Q 009512 361 -------------------VESNKKKQKLFDILMSKQH--------------FTPPAVVYVGSRLGADLLSNAISVTT-- 405 (533)
Q Consensus 361 -------------------~~~~~k~~~l~~~l~~~~~--------------~~~~~lIF~~s~~~~~~l~~~l~~~~-- 405 (533)
+....|...|-++|.+... .++++||||.-+..++.+.+-|-+..
T Consensus 1287 p~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mp 1366 (1549)
T KOG0392|consen 1287 PDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMP 1366 (1549)
T ss_pred chHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcC
Confidence 1123355566666655321 24699999999999999999886433
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcC-CCcEE-EEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccE--
Q 009512 406 GMKALSIHGEKPMKERREIMRSFLVG-EVPVI-VATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGT-- 481 (533)
Q Consensus 406 ~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~VL-vaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~-- 481 (533)
.+....+.|..+..+|.++.+.|+++ .++|| ++|.+.+-|+|+.++++||++.-.|++..-+|.+-||.|.|++..
T Consensus 1367 sVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVN 1446 (1549)
T KOG0392|consen 1367 SVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVN 1446 (1549)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeee
Confidence 33344789999999999999999999 78886 567899999999999999999999999999999999999998754
Q ss_pred EEEEecCc
Q 009512 482 AIVFVNEE 489 (533)
Q Consensus 482 ~~~l~~~~ 489 (533)
++-|++..
T Consensus 1447 VyRlItrG 1454 (1549)
T KOG0392|consen 1447 VYRLITRG 1454 (1549)
T ss_pred eeeehhcc
Confidence 55666654
No 141
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.73 E-value=5.2e-16 Score=152.57 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhc--cCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcE-EEEec
Q 009512 365 KKKQKLFDILMSK--QHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVPV-IVATG 440 (533)
Q Consensus 365 ~k~~~l~~~l~~~--~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~V-LvaT~ 440 (533)
.|...|.+.+.-. ....-+.|||...-...+.+.=.|. +.|+.++-+.|+|+...|...++.|.+. .+.| ||+-.
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~-kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLG-KAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhh-ccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 3455555544332 2233478999988888888888888 8999999999999999999999999987 6776 56667
Q ss_pred cccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCC--ccEEEEEecCc
Q 009512 441 ILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD--EGTAIVFVNEE 489 (533)
Q Consensus 441 ~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~--~g~~~~l~~~~ 489 (533)
..+.-+|+..+.+|+.+|++|++..-.|..-|..|.|+ +=.++.|+-++
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 77888999999999999999999999998888888886 34667776554
No 142
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.72 E-value=3.1e-15 Score=147.33 Aligned_cols=307 Identities=14% Similarity=0.207 Sum_probs=201.3
Q ss_pred CCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 156 DMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~-~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
..+.|+|.+.+...+ .|..+++...+|.|||+.++.-+..+..+ ...||+||..-+ -.|.+.+.+|.
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE-----------wplliVcPAsvr-ftWa~al~r~l 264 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE-----------WPLLIVCPASVR-FTWAKALNRFL 264 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc-----------CcEEEEecHHHh-HHHHHHHHHhc
Confidence 356699999988776 77889999999999999765443333222 238999998554 56888888887
Q ss_pred cCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchH--HHHHHHHHhC
Q 009512 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFR--DQVMQIFRAI 312 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~--~~i~~i~~~~ 312 (533)
...-. +.++.++..... .+.....|.|.+++.+..+-.. +.-..+.+||+||+|++-+..-. .....+++
T Consensus 265 ps~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk-- 336 (689)
T KOG1000|consen 265 PSIHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDSKTKRTKAATDLLK-- 336 (689)
T ss_pred ccccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhccchhhhhhhhhHHH--
Confidence 65432 455555544332 1223467899999988554332 22345889999999988654322 22222222
Q ss_pred CCCcEEEecccCc----H---------------HHHHHHHhhcC-Ce--EEEEeCC-C----------------------
Q 009512 313 SLPQILMYSATIS----Q---------------EVEKMSSSISK-DI--VVVSVGK-P---------------------- 347 (533)
Q Consensus 313 ~~~q~i~~SAT~~----~---------------~~~~~~~~~~~-~~--~~i~~~~-~---------------------- 347 (533)
...++|++|+|+. . ...+++..+.. .. +...... .
T Consensus 337 ~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dv 416 (689)
T KOG1000|consen 337 VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADV 416 (689)
T ss_pred HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2467899999962 1 11112211111 11 1111100 0
Q ss_pred --CCCCccceEEEEEecc--------------------------------------hhhHHHHHHHHHh----ccCCCCC
Q 009512 348 --NMPNKAVKQLAIWVES--------------------------------------NKKKQKLFDILMS----KQHFTPP 383 (533)
Q Consensus 348 --~~~~~~i~~~~~~~~~--------------------------------------~~k~~~l~~~l~~----~~~~~~~ 383 (533)
..+++ ++.+.++.. ..|...+.+.+.. ......+
T Consensus 417 L~qLPpK--rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~K 494 (689)
T KOG1000|consen 417 LKQLPPK--RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRK 494 (689)
T ss_pred HhhCCcc--ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCce
Confidence 01222 222221110 0122233333333 1223458
Q ss_pred EEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcE-EEEeccccccCCCCCccEEEEcCCCC
Q 009512 384 AVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVPV-IVATGILGRGVELLGVRQVIIFDMPN 461 (533)
Q Consensus 384 ~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~V-LvaT~~~~~Gldi~~v~~VI~~~~p~ 461 (533)
.+||+......+.+...+. ..++....|.|..+..+|....+.|+.. ++.| +++-..++.|+++...+.|++..+++
T Consensus 495 flVFaHH~~vLd~Iq~~~~-~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~w 573 (689)
T KOG1000|consen 495 FLVFAHHQIVLDTIQVEVN-KRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHW 573 (689)
T ss_pred EEEEehhHHHHHHHHHHHH-HcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecC
Confidence 9999999999999999998 7899999999999999999999999976 5666 55667789999999999999999999
Q ss_pred CHhHHHHhhcccCCCCCccEEEEE
Q 009512 462 SIKEYVHQIGRASQMGDEGTAIVF 485 (533)
Q Consensus 462 s~~~y~qriGR~gR~g~~g~~~~l 485 (533)
++.-.+|.=-|+.|.|++..+.+.
T Consensus 574 nPgvLlQAEDRaHRiGQkssV~v~ 597 (689)
T KOG1000|consen 574 NPGVLLQAEDRAHRIGQKSSVFVQ 597 (689)
T ss_pred CCceEEechhhhhhccccceeeEE
Confidence 999999999999999987654433
No 143
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.72 E-value=2.9e-17 Score=128.38 Aligned_cols=77 Identities=43% Similarity=0.780 Sum_probs=74.0
Q ss_pred HHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCC
Q 009512 400 AISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMG 477 (533)
Q Consensus 400 ~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g 477 (533)
+|+ ..++.+..+||++++.+|..+++.|+++...|||||+++++|+|+|.+++||++++|+++.+|.|++||++|.|
T Consensus 2 ~L~-~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLE-KKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHH-HTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChH-HCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 455 78999999999999999999999999999999999999999999999999999999999999999999999986
No 144
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.71 E-value=4.7e-16 Score=135.69 Aligned_cols=143 Identities=34% Similarity=0.510 Sum_probs=111.0
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHH
Q 009512 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 252 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 252 (533)
+++++.++||+|||..++.++...+.. ...++++|++|++.++.|+.+.+...... +..+..+.++.....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~--------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 71 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS--------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQ 71 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc--------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhH
Confidence 468999999999999888777765543 34578999999999999999888887765 567777777766665
Q ss_pred HHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHH-HHHHHhCCCCcEEEecccC
Q 009512 253 QVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQV-MQIFRAISLPQILMYSATI 324 (533)
Q Consensus 253 ~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i-~~i~~~~~~~q~i~~SAT~ 324 (533)
.......+.+|+++|++.+...+.........++++|+||+|.+....+.... ..+.......+++++|||+
T Consensus 72 ~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 72 QEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55555667999999999998888776555677899999999998876544332 2333344778999999996
No 145
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=7.5e-16 Score=153.81 Aligned_cols=273 Identities=19% Similarity=0.197 Sum_probs=175.9
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHH
Q 009512 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQV 254 (533)
Q Consensus 175 vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 254 (533)
++-+|||.||||.-++ .++.. ....+|..|.|-||..+++.+.+. |+.+-++.|.+.....-
T Consensus 194 i~H~GPTNSGKTy~AL----qrl~~----------aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRAL----QRLKS----------AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLD 255 (700)
T ss_pred EEEeCCCCCchhHHHH----HHHhh----------hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCC
Confidence 5669999999998643 44332 345899999999999988887776 55666666644322211
Q ss_pred HHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-C-CCcEEEecccCcHHHHHHH
Q 009512 255 YRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-S-LPQILMYSATISQEVEKMS 332 (533)
Q Consensus 255 ~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~-~~q~i~~SAT~~~~~~~~~ 332 (533)
. ...++.+=||.++.. --..+++.|+||++.|.|...+-.+.+-+--+ . ...+.+ .+.+..+.
T Consensus 256 ~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldlV 320 (700)
T KOG0953|consen 256 N--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDLV 320 (700)
T ss_pred C--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHHH
Confidence 0 112566667755541 12457899999999998876544333322111 1 111111 12233444
Q ss_pred Hhhc---CCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeE
Q 009512 333 SSIS---KDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKA 409 (533)
Q Consensus 333 ~~~~---~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~ 409 (533)
+.++ .+.+.+...++-.+.. +. ..++.-+.... .+ =-|.|.|++....+...+.+..+..+
T Consensus 321 ~~i~k~TGd~vev~~YeRl~pL~--------v~-----~~~~~sl~nlk-~G--DCvV~FSkk~I~~~k~kIE~~g~~k~ 384 (700)
T KOG0953|consen 321 RKILKMTGDDVEVREYERLSPLV--------VE-----ETALGSLSNLK-PG--DCVVAFSKKDIFTVKKKIEKAGNHKC 384 (700)
T ss_pred HHHHhhcCCeeEEEeecccCcce--------eh-----hhhhhhhccCC-CC--CeEEEeehhhHHHHHHHHHHhcCcce
Confidence 4333 2333333322221111 11 12222222222 12 24557788999999999986777779
Q ss_pred EEEcCCCCHHHHHHHHHHHhc--CCCcEEEEeccccccCCCCCccEEEEcCC---------CCCHhHHHHhhcccCCCCC
Q 009512 410 LSIHGEKPMKERREIMRSFLV--GEVPVIVATGILGRGVELLGVRQVIIFDM---------PNSIKEYVHQIGRASQMGD 478 (533)
Q Consensus 410 ~~ih~~~~~~~r~~~~~~f~~--g~~~VLvaT~~~~~Gldi~~v~~VI~~~~---------p~s~~~y~qriGR~gR~g~ 478 (533)
.+++|+++++.|...-..|++ ++++||||||.+++|+|+ +++-||+++. +.+..+..|..|||||.|.
T Consensus 385 aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s 463 (700)
T KOG0953|consen 385 AVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGS 463 (700)
T ss_pred EEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhccccccc
Confidence 999999999999999999998 899999999999999996 6899999875 4577889999999999875
Q ss_pred ---ccEEEEEecCcCHHHHHHHH
Q 009512 479 ---EGTAIVFVNEENKNLFQELV 498 (533)
Q Consensus 479 ---~g~~~~l~~~~~~~~~~~l~ 498 (533)
.|.+.+|..+ |...++.++
T Consensus 464 ~~~~G~vTtl~~e-DL~~L~~~l 485 (700)
T KOG0953|consen 464 KYPQGEVTTLHSE-DLKLLKRIL 485 (700)
T ss_pred CCcCceEEEeeHh-hHHHHHHHH
Confidence 4777666554 444444433
No 146
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.67 E-value=3.5e-16 Score=143.58 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=103.0
Q ss_pred CCCHHHHHHHHHHhC-------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHH
Q 009512 157 MPTPVQMQAIPSALS-------GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ 229 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~-------g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~ 229 (533)
+|+++|.+++..+.. .+++++.+|||||||.+++..+..... +++|++|+..|+.|+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------------~~l~~~p~~~l~~Q~~~~ 69 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-------------KVLIVAPNISLLEQWYDE 69 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-------------EEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-------------ceeEecCHHHHHHHHHHH
Confidence 578999999999883 689999999999999987754444321 699999999999999999
Q ss_pred HHHHhcCCCCeEE-----------EEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCC-----------CCCCCeeE
Q 009512 230 AKLLGKGLPFKTA-----------LVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD-----------IELDDIRM 287 (533)
Q Consensus 230 ~~~~~~~~~~~~~-----------~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~-----------~~l~~i~~ 287 (533)
+..+......... ....................++++|.+.|........ ......++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (184)
T PF04851_consen 70 FDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDL 149 (184)
T ss_dssp HHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESE
T ss_pred HHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCE
Confidence 9777543211100 0111111112122223457899999999988775421 22456789
Q ss_pred EEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCcH
Q 009512 288 FVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQ 326 (533)
Q Consensus 288 vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~~ 326 (533)
||+||||++....- +..++. .+...+|+||||+.+
T Consensus 150 vI~DEaH~~~~~~~---~~~i~~-~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 150 VIIDEAHHYPSDSS---YREIIE-FKAAFILGLTATPFR 184 (184)
T ss_dssp EEEETGGCTHHHHH---HHHHHH-SSCCEEEEEESS-S-
T ss_pred EEEehhhhcCCHHH---HHHHHc-CCCCeEEEEEeCccC
Confidence 99999999765431 444444 678889999999864
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.67 E-value=8.2e-14 Score=152.30 Aligned_cols=132 Identities=18% Similarity=0.307 Sum_probs=93.1
Q ss_pred HHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhc----CCCcEEEEeccc
Q 009512 367 KQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLV----GEVPVIVATGIL 442 (533)
Q Consensus 367 ~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~----g~~~VLvaT~~~ 442 (533)
...+.+.+.......+.+|||++|....+.++..|....+..+ ..+|.. .+..+++.|++ |+-.||++|+.+
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~l-l~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLML-LVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcE-EEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 3445554444333455699999999999999999874444443 345542 46778877764 678899999999
Q ss_pred cccCCCCC--ccEEEEcCCCC----C--------------------------HhHHHHhhcccCCCCCccEEEEEecCc-
Q 009512 443 GRGVELLG--VRQVIIFDMPN----S--------------------------IKEYVHQIGRASQMGDEGTAIVFVNEE- 489 (533)
Q Consensus 443 ~~Gldi~~--v~~VI~~~~p~----s--------------------------~~~y~qriGR~gR~g~~g~~~~l~~~~- 489 (533)
.+|||+|+ +++||+..+|. + +..+.|.+||.-|...+--+++++++.
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~ 675 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRL 675 (697)
T ss_pred cccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccc
Confidence 99999987 78899876552 1 123468899999986654466677765
Q ss_pred -CHHHHHHHHHHHH
Q 009512 490 -NKNLFQELVDILK 502 (533)
Q Consensus 490 -~~~~~~~l~~~l~ 502 (533)
.+.+-+.|++.|.
T Consensus 676 ~~~~Yg~~~l~sLP 689 (697)
T PRK11747 676 LTKRYGKRLLDALP 689 (697)
T ss_pred cchhHHHHHHHhCC
Confidence 5667778876654
No 148
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=3.1e-14 Score=153.77 Aligned_cols=129 Identities=21% Similarity=0.276 Sum_probs=104.5
Q ss_pred EEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcEEE
Q 009512 359 IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVPVIV 437 (533)
Q Consensus 359 ~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~VLv 437 (533)
.+.....|...+++-+......+.|+||-+.|.+..+.|+..|. ..|++...+++.....|-..+-+ +| .-.|-|
T Consensus 606 vy~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~-~~gI~H~VLNAK~h~~EAeIVA~---AG~~GaVTI 681 (1112)
T PRK12901 606 VYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLK-MRKIPHNVLNAKLHQKEAEIVAE---AGQPGTVTI 681 (1112)
T ss_pred EecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHH-HcCCcHHHhhccchhhHHHHHHh---cCCCCcEEE
Confidence 34455677788888887777788999999999999999999998 78888888877655444333332 35 446899
Q ss_pred EeccccccCCCC--------CccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCH
Q 009512 438 ATGILGRGVELL--------GVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENK 491 (533)
Q Consensus 438 aT~~~~~Gldi~--------~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~ 491 (533)
||++++||.||. +==+||-...+.|..--.|-.||+||.|.+|.+-.|++-+|.
T Consensus 682 ATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 682 ATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred eccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 999999999986 224788889999999999999999999999999988886653
No 149
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.62 E-value=8.1e-14 Score=148.75 Aligned_cols=124 Identities=18% Similarity=0.257 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCC--CcEEEEeccc
Q 009512 365 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE--VPVIVATGIL 442 (533)
Q Consensus 365 ~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~--~~VLvaT~~~ 442 (533)
.|...|.-+|......++++|||.......+.|..+|. ..|+..+.+.|...-++|+..++.|+.+. ...|++|...
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLn-yHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSg 1338 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLN-YHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSG 1338 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHh-hcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCC
Confidence 46778888888888889999999999999999999998 89999999999999999999999999873 3568899999
Q ss_pred cccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCc--cEEEEEecCc
Q 009512 443 GRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDE--GTAIVFVNEE 489 (533)
Q Consensus 443 ~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~--g~~~~l~~~~ 489 (533)
+.|||+.++++||+||..|++..-.|.--|+.|.|+. =+.|-|+++.
T Consensus 1339 gvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1339 GVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred ccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9999999999999999999877666665566665554 3556667765
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.62 E-value=1.8e-13 Score=150.60 Aligned_cols=120 Identities=21% Similarity=0.316 Sum_probs=86.3
Q ss_pred CCCEEEEEcCcccHHHHHHHHHhhcCC-eEEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEeccccccCCCCC--ccEEEE
Q 009512 381 TPPAVVYVGSRLGADLLSNAISVTTGM-KALSIHGEKPMKERREIMRSFLVGEV-PVIVATGILGRGVELLG--VRQVII 456 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~~~~~-~~~~ih~~~~~~~r~~~~~~f~~g~~-~VLvaT~~~~~Gldi~~--v~~VI~ 456 (533)
.+++|||++|......+++.+. .... .....+|..+ +...++.|..+.- .++|+|+.+++|+|+++ .+.||+
T Consensus 479 ~~~~lvlF~Sy~~l~~~~~~~~-~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI 554 (654)
T COG1199 479 PGGVLVLFPSYEYLKRVAERLK-DERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVI 554 (654)
T ss_pred CCCEEEEeccHHHHHHHHHHHh-hcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEE
Confidence 4489999999999999999997 3332 2344555544 4478888887644 89999999999999997 477888
Q ss_pred cCCCC------------------------------CHhHHHHhhcccCCCCCccEEEEEecCc--CHHHHHHHHHHHHhc
Q 009512 457 FDMPN------------------------------SIKEYVHQIGRASQMGDEGTAIVFVNEE--NKNLFQELVDILKSS 504 (533)
Q Consensus 457 ~~~p~------------------------------s~~~y~qriGR~gR~g~~g~~~~l~~~~--~~~~~~~l~~~l~~~ 504 (533)
..+|. .+....|.+||+-|.-...-++++++.. .+.+-+.+.+.+...
T Consensus 555 ~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~~~~y~~~l~~~l~~~ 634 (654)
T COG1199 555 VGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYATKRYGKLLLDSLPPF 634 (654)
T ss_pred EecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccchhhhHHHHHHHhCCCC
Confidence 66552 3455689999999976654456666654 333556666555544
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.61 E-value=6.1e-13 Score=146.59 Aligned_cols=143 Identities=17% Similarity=0.285 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcc-CCCCCEEEEEcCcccHHHHHHHHHhhcCC------eEEEEcCCCCHHHHHHHHHHHhc----CCCcE
Q 009512 367 KQKLFDILMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGM------KALSIHGEKPMKERREIMRSFLV----GEVPV 435 (533)
Q Consensus 367 ~~~l~~~l~~~~-~~~~~~lIF~~s~~~~~~l~~~l~~~~~~------~~~~ih~~~~~~~r~~~~~~f~~----g~~~V 435 (533)
...+.+.+.+.. ...+.+|||++|....+.+.+.+. ..+. .-..+..+....++..+++.|+. |.-.|
T Consensus 507 ~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~-~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gav 585 (705)
T TIGR00604 507 VRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWK-EMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAV 585 (705)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHH-hcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceE
Confidence 344555554432 234679999999999999988876 2221 01122222233578899999965 45679
Q ss_pred EEEe--ccccccCCCCC--ccEEEEcCCCC-CH------------------------------hHHHHhhcccCCCCCcc
Q 009512 436 IVAT--GILGRGVELLG--VRQVIIFDMPN-SI------------------------------KEYVHQIGRASQMGDEG 480 (533)
Q Consensus 436 LvaT--~~~~~Gldi~~--v~~VI~~~~p~-s~------------------------------~~y~qriGR~gR~g~~g 480 (533)
|+|+ +.+++|||+++ ++.||..++|. ++ ....|.+||+-|..++-
T Consensus 586 L~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~ 665 (705)
T TIGR00604 586 LLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDY 665 (705)
T ss_pred EEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCce
Confidence 9999 88999999997 68999988875 11 22368899999987765
Q ss_pred EEEEEecCcCHHHHHHHHHHHHhcCCCCCHHHHhchhcc
Q 009512 481 TAIVFVNEENKNLFQELVDILKSSGAGIPRELINSRYTV 519 (533)
Q Consensus 481 ~~~~l~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~~~~~ 519 (533)
-++++++..=.. .+....+|.|+.+.-...
T Consensus 666 G~iillD~R~~~---------~~~~~~lp~W~~~~~~~~ 695 (705)
T TIGR00604 666 GSIVLLDKRYAR---------SNKRKKLPKWIQDTIQSS 695 (705)
T ss_pred EEEEEEehhcCC---------cchhhhcCHHHHhhcccc
Confidence 567777654111 112255677777665443
No 152
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.61 E-value=2.6e-14 Score=145.92 Aligned_cols=126 Identities=17% Similarity=0.285 Sum_probs=110.6
Q ss_pred chhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCc-EEEEecc
Q 009512 363 SNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVP-VIVATGI 441 (533)
Q Consensus 363 ~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~-VLvaT~~ 441 (533)
+..|...|-++|......++++|+|+.-.+..+.+.++|. ..++....+.|.....+|..++.+|+..++- +|++|..
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~-yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRA 1104 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLV-YRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRA 1104 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHH-hhccceEEecCcchhhHHHHHHhhccCCceEEEEEeccc
Confidence 4456667777777777888999999999999999999998 8899999999999999999999999997655 4889999
Q ss_pred ccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccE--EEEEecCc
Q 009512 442 LGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGT--AIVFVNEE 489 (533)
Q Consensus 442 ~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~--~~~l~~~~ 489 (533)
.+-|||+..+++||+||..|++..-.|.+-||.|.|+... ++-++...
T Consensus 1105 GGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1105 GGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred CcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 9999999999999999999999999999999999998654 55555544
No 153
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.60 E-value=6.8e-15 Score=155.88 Aligned_cols=326 Identities=15% Similarity=0.162 Sum_probs=208.4
Q ss_pred CCCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009512 156 DMPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~----~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
.++.+||...+.++. .+-+.++...||-|||.. .+.++.++++.+ ...+.-||+||+..|.+ |..++.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K------~~~GP~LvivPlstL~N-W~~Ef~ 464 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK------QMQGPFLIIVPLSTLVN-WSSEFP 464 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc------ccCCCeEEeccccccCC-chhhcc
Confidence 378899999998875 344789999999999986 556666776643 22334889999999966 777777
Q ss_pred HHhcCCCCeEEEEEcCCchHH-HH-HHH-HcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHH
Q 009512 232 LLGKGLPFKTALVVGGDAMAR-QV-YRI-QQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQI 308 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~-~~-~~l-~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i 308 (533)
++... +..+ .|.|.+... .+ ..+ ....+|+++|++.+.. .+..+.--+..++||||.|+|.+- ...+...
T Consensus 465 kWaPS--v~~i-~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~ 537 (1157)
T KOG0386|consen 465 KWAPS--VQKI-QYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDT 537 (1157)
T ss_pred ccccc--eeee-eeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHH
Confidence 77543 3333 344433221 11 111 2458999999988754 111122234579999999998642 2222222
Q ss_pred HH-hCCCCcEEEecccC---------------------------------------------------------------
Q 009512 309 FR-AISLPQILMYSATI--------------------------------------------------------------- 324 (533)
Q Consensus 309 ~~-~~~~~q~i~~SAT~--------------------------------------------------------------- 324 (533)
+. +....+.+++|+|+
T Consensus 538 L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFl 617 (1157)
T KOG0386|consen 538 LNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFL 617 (1157)
T ss_pred hhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHH
Confidence 22 22334444555552
Q ss_pred ------------cHHHHHHHHhh-----------cC-CeEEE-Ee-----CCCCC---------------CCccceEEE-
Q 009512 325 ------------SQEVEKMSSSI-----------SK-DIVVV-SV-----GKPNM---------------PNKAVKQLA- 358 (533)
Q Consensus 325 ------------~~~~~~~~~~~-----------~~-~~~~i-~~-----~~~~~---------------~~~~i~~~~- 358 (533)
|+.++...+.- +. ....+ .. +.... ...++...+
T Consensus 618 LRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~ 697 (1157)
T KOG0386|consen 618 LRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYT 697 (1157)
T ss_pred HHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccc
Confidence 11111111100 00 00000 00 00000 000000000
Q ss_pred ------EEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q 009512 359 ------IWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGE 432 (533)
Q Consensus 359 ------~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~ 432 (533)
..+....|...|-.++-.....++++|.|+....-.+.+..+|. ..++....+.|.....+|...++.|..-.
T Consensus 698 ~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~-~~~~kYlRLDG~TK~~eRg~ll~~FN~Pd 776 (1157)
T KOG0386|consen 698 LHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQ-IREYKYLRLDGQTKVEERGDLLEIFNAPD 776 (1157)
T ss_pred cccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHh-hhhhheeeecCCcchhhHHHHHHHhcCCC
Confidence 00111234444445555566778999999999999999999998 78899999999999999999999999853
Q ss_pred ---CcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCcCHHHHHHH
Q 009512 433 ---VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEENKNLFQEL 497 (533)
Q Consensus 433 ---~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~~~~~~~~l 497 (533)
..+|.+|...+.|+|+..+++||+||..+++..+.|+--||.|.|+...+-++....-..+-..+
T Consensus 777 s~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~i 844 (1157)
T KOG0386|consen 777 SPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKI 844 (1157)
T ss_pred CceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHH
Confidence 34688999999999999999999999999999999999999999998777777655444433333
No 154
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.58 E-value=2.7e-12 Score=129.82 Aligned_cols=290 Identities=14% Similarity=0.225 Sum_probs=206.3
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhcC-------------CCC------eEEEEEcCCchHHHHHHHHc----------
Q 009512 209 KNPLAMVLTPTRELCIQVEEQAKLLGKG-------------LPF------KTALVVGGDAMARQVYRIQQ---------- 259 (533)
Q Consensus 209 ~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~-------------~~~------~~~~~~gg~~~~~~~~~l~~---------- 259 (533)
..|+||||+|+|..|-.+.+.+-.+... ++. ....-......+.....+..
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 4689999999999999988777666543 110 00000001112222222222
Q ss_pred ---------------CCceeecChHHHHHHHHc------CCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCC-----
Q 009512 260 ---------------GVELIVGTPGRLIDLLMK------HDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAIS----- 313 (533)
Q Consensus 260 ---------------~~~Iiv~Tp~~l~~~l~~------~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~----- 313 (533)
+++||||+|=-|...+.. ..--|++|.++|+|.||-|+ |+....+..++.+++
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCC
Confidence 357999999999877764 22348899999999999776 445666777777661
Q ss_pred --------------------CCcEEEecccCcHHHHHHHHhhcCCe---EEEEeCCC-----CCCCccceEEEEEecchh
Q 009512 314 --------------------LPQILMYSATISQEVEKMSSSISKDI---VVVSVGKP-----NMPNKAVKQLAIWVESNK 365 (533)
Q Consensus 314 --------------------~~q~i~~SAT~~~~~~~~~~~~~~~~---~~i~~~~~-----~~~~~~i~~~~~~~~~~~ 365 (533)
-+|+|++|+...+++..+......+. +.+..... ......+.|.+..++...
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 14999999999999998888755443 22222111 233345667776654322
Q ss_pred -------hHH----HHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCc
Q 009512 366 -------KKQ----KLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVP 434 (533)
Q Consensus 366 -------k~~----~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~ 434 (533)
+.+ .++..+.. ....+.+|||++|.-.--.+.++|+ ..++....+|...+..+-.++...|..|+.+
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk-~~~~sF~~i~EYts~~~isRAR~~F~~G~~~ 352 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLK-KENISFVQISEYTSNSDISRARSQFFHGRKP 352 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHH-hcCCeEEEecccCCHHHHHHHHHHHHcCCce
Confidence 222 23333331 3445689999999999999999998 8899999999999999999999999999999
Q ss_pred EEEEeccc--cccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCC------ccEEEEEecCcCHHHHHHHHHHH
Q 009512 435 VIVATGIL--GRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD------EGTAIVFVNEENKNLFQELVDIL 501 (533)
Q Consensus 435 VLvaT~~~--~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~------~g~~~~l~~~~~~~~~~~l~~~l 501 (533)
||+.|.-+ -+-..|.++++||+|++|..+.-|-..++-.+.... ...|.++++.-|.-.+..|+..-
T Consensus 353 iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt~ 427 (442)
T PF06862_consen 353 ILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGTE 427 (442)
T ss_pred EEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCHH
Confidence 99999853 466788999999999999999988887765544332 57899999999988888877543
No 155
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.57 E-value=1.2e-14 Score=114.38 Aligned_cols=81 Identities=40% Similarity=0.688 Sum_probs=76.1
Q ss_pred HHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCC
Q 009512 396 LLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQ 475 (533)
Q Consensus 396 ~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR 475 (533)
.++..|. ..++.+..+||+++..+|..+++.|+++...|||+|+++++|+|+|.+++||++++|++...|.|++||++|
T Consensus 2 ~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R 80 (82)
T smart00490 2 ELAELLK-ELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGR 80 (82)
T ss_pred HHHHHHH-HCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccccc
Confidence 4566776 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 009512 476 MG 477 (533)
Q Consensus 476 ~g 477 (533)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 75
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.54 E-value=2.3e-12 Score=138.68 Aligned_cols=280 Identities=14% Similarity=0.118 Sum_probs=169.7
Q ss_pred EccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHH---H
Q 009512 178 SANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ---V 254 (533)
Q Consensus 178 ~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~ 254 (533)
.+-+|||||.+|+-.+-..+. .|..+|||+|...|..|+...++..+. +..+..++++.+..+. +
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~----------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w 233 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLR----------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW 233 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHH----------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH
Confidence 334699999998766554443 366799999999999999888887653 1457777777665543 3
Q ss_pred HHHHcC-CceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc---c---hHHHHHHHHHhCCCCcEEEecccCcHH
Q 009512 255 YRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR---G---FRDQVMQIFRAISLPQILMYSATISQE 327 (533)
Q Consensus 255 ~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~---~---~~~~i~~i~~~~~~~q~i~~SAT~~~~ 327 (533)
..+..| ..|+|+|-..+ ...+.++++||+||=|.-.-. + ....+.....+.....+|+-|||++-+
T Consensus 234 ~~~~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSle 306 (665)
T PRK14873 234 LAVLRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAE 306 (665)
T ss_pred HHHhCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHH
Confidence 344444 78999993222 246889999999999954321 1 124566666677889999999999876
Q ss_pred HHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEe---c-ch-----hhHHHHHHHHHhccCCCCCEEEEEcCcccHHHH-
Q 009512 328 VEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWV---E-SN-----KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLL- 397 (533)
Q Consensus 328 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~---~-~~-----~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l- 397 (533)
....+.......+...........+.+.-.-..- . +. .-...+++.+.+....+ ++|||+|.+--+-.+
T Consensus 307 s~~~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~ 385 (665)
T PRK14873 307 AQALVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLA 385 (665)
T ss_pred HHHHHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeE
Confidence 6554443221111111000011111111111000 0 00 01234666666666666 999999987544332
Q ss_pred ----------------------------------------------------------HHHHHhhc-CCeEEEEcCCCCH
Q 009512 398 ----------------------------------------------------------SNAISVTT-GMKALSIHGEKPM 418 (533)
Q Consensus 398 ----------------------------------------------------------~~~l~~~~-~~~~~~ih~~~~~ 418 (533)
++.|.+.+ +.++..+
T Consensus 386 C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~------ 459 (665)
T PRK14873 386 CARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS------ 459 (665)
T ss_pred hhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE------
Confidence 22221111 1111111
Q ss_pred HHHHHHHHHHhcCCCcEEEEec----cccccCCCCCccEEEEcCCCC------------CHhHHHHhhcccCCCCCccEE
Q 009512 419 KERREIMRSFLVGEVPVIVATG----ILGRGVELLGVRQVIIFDMPN------------SIKEYVHQIGRASQMGDEGTA 482 (533)
Q Consensus 419 ~~r~~~~~~f~~g~~~VLvaT~----~~~~Gldi~~v~~VI~~~~p~------------s~~~y~qriGR~gR~g~~g~~ 482 (533)
+++.+++.|. ++.+|||+|+ +++ +++..|++.|... ....+.|-.||+||....|.+
T Consensus 460 -d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V 532 (665)
T PRK14873 460 -GGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQV 532 (665)
T ss_pred -ChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEE
Confidence 2345788886 5899999999 655 3567776665431 244557888999999889999
Q ss_pred EEEecCcC
Q 009512 483 IVFVNEEN 490 (533)
Q Consensus 483 ~~l~~~~~ 490 (533)
++..+++.
T Consensus 533 ~iq~~p~~ 540 (665)
T PRK14873 533 VVVAESSL 540 (665)
T ss_pred EEEeCCCC
Confidence 98865543
No 157
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.54 E-value=1.5e-13 Score=140.73 Aligned_cols=119 Identities=21% Similarity=0.283 Sum_probs=94.3
Q ss_pred hhHHHHHHHHHhc-cCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhc--CCCcE-EEEec
Q 009512 365 KKKQKLFDILMSK-QHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLV--GEVPV-IVATG 440 (533)
Q Consensus 365 ~k~~~l~~~l~~~-~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~--g~~~V-LvaT~ 440 (533)
.|....++++... .....+++|..........+...|. ..|+....+||.....+|..+++.|.. |..+| |++-.
T Consensus 729 ~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~-~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLt 807 (901)
T KOG4439|consen 729 CKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQ-KGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLT 807 (901)
T ss_pred hHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHh-hCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEc
Confidence 3455555555443 3444567776666666677778887 889999999999999999999999986 44566 45556
Q ss_pred cccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEE
Q 009512 441 ILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV 484 (533)
Q Consensus 441 ~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~ 484 (533)
..+-|||+-..+|+|..|+.|++.--.|..-|..|.|++..+++
T Consensus 808 AGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 808 AGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred cCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 77899999999999999999999999999999999998866554
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.52 E-value=1.9e-12 Score=140.90 Aligned_cols=320 Identities=17% Similarity=0.123 Sum_probs=174.9
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhC--------CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcc
Q 009512 147 LQNIEAAGYDMPTPVQMQAIPSALS--------GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 147 ~~~l~~~g~~~p~~~Q~~~i~~i~~--------g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.+.|++..-..-+.||-.|+..+.. |--++-.|.||+|||++=.- ++..+.. ...+.+..|..-
T Consensus 398 hk~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd-------~~~g~RfsiALG 469 (1110)
T TIGR02562 398 HKYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRD-------DKQGARFAIALG 469 (1110)
T ss_pred hhhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCC-------CCCCceEEEEcc
Confidence 3444433333457899999998763 22256799999999986332 2222221 244556666666
Q ss_pred cHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHH-------------------------------------------H
Q 009512 219 TRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQV-------------------------------------------Y 255 (533)
Q Consensus 219 tr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~-------------------------------------------~ 255 (533)
.|.|--|.-+.+++-..--.-...+++||....+.. .
T Consensus 470 LRTLTLQTGda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~ 549 (1110)
T TIGR02562 470 LRSLTLQTGHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLG 549 (1110)
T ss_pred ccceeccchHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhh
Confidence 666666655555544332223334444432221111 0
Q ss_pred HHHc--------CCceeecChHHHHHHHHc--CC-CCCC--C--eeEEEEeccchhhhcchHHHHHHHHH--hCCCCcEE
Q 009512 256 RIQQ--------GVELIVGTPGRLIDLLMK--HD-IELD--D--IRMFVLDEVDCMLQRGFRDQVMQIFR--AISLPQIL 318 (533)
Q Consensus 256 ~l~~--------~~~Iiv~Tp~~l~~~l~~--~~-~~l~--~--i~~vVvDEah~~~~~~~~~~i~~i~~--~~~~~q~i 318 (533)
.+.+ ...++|||+..++..... .. ..+. . =+.|||||+|..-.. ....+..++. ..-..+++
T Consensus 550 ~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~~~L~rlL~w~~~lG~~Vl 628 (1110)
T TIGR02562 550 RLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DLPALLRLVQLAGLLGSRVL 628 (1110)
T ss_pred hhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HHHHHHHHHHHHHHcCCCEE
Confidence 0000 145999999999877632 11 1111 1 257999999965322 2233444444 22578999
Q ss_pred EecccCcHHHHHHHH-hh----------cC---CeEEEEe---CCCCCC--------------------------Cccce
Q 009512 319 MYSATISQEVEKMSS-SI----------SK---DIVVVSV---GKPNMP--------------------------NKAVK 355 (533)
Q Consensus 319 ~~SAT~~~~~~~~~~-~~----------~~---~~~~i~~---~~~~~~--------------------------~~~i~ 355 (533)
++|||+|+.+..... .+ .. .++.+.. .+.... ...+.
T Consensus 629 LmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~ 708 (1110)
T TIGR02562 629 LSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVR 708 (1110)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999999976543321 11 11 1111111 110000 00001
Q ss_pred EE--EEEecch-----hhHHHHHHHHHh--------cc---C-CCCC---EEEEEcCcccHHHHHHHHHhh-----cCCe
Q 009512 356 QL--AIWVESN-----KKKQKLFDILMS--------KQ---H-FTPP---AVVYVGSRLGADLLSNAISVT-----TGMK 408 (533)
Q Consensus 356 ~~--~~~~~~~-----~k~~~l~~~l~~--------~~---~-~~~~---~lIF~~s~~~~~~l~~~l~~~-----~~~~ 408 (533)
.. ...++.. .....+.+.+.+ +. . .+.+ .||-+.++..+..++..|... ..+.
T Consensus 709 R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~ 788 (1110)
T TIGR02562 709 RLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIH 788 (1110)
T ss_pred ceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCcee
Confidence 11 1111111 112222222211 11 1 1122 367778888888888877522 2345
Q ss_pred EEEEcCCCCHHHHHHHHHHH----------------------hc----CCCcEEEEeccccccCCCCCccEEEEcCCCCC
Q 009512 409 ALSIHGEKPMKERREIMRSF----------------------LV----GEVPVIVATGILGRGVELLGVRQVIIFDMPNS 462 (533)
Q Consensus 409 ~~~ih~~~~~~~r~~~~~~f----------------------~~----g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s 462 (533)
...||+......|..+++.+ .+ +...|+|+|++++.|+|+. .+.+| .-|.+
T Consensus 789 ~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--~~~~~ 865 (1110)
T TIGR02562 789 LCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI--ADPSS 865 (1110)
T ss_pred EEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee--eccCc
Confidence 77899999888887776553 12 3567999999999999963 44444 45667
Q ss_pred HhHHHHhhcccCCCCC
Q 009512 463 IKEYVHQIGRASQMGD 478 (533)
Q Consensus 463 ~~~y~qriGR~gR~g~ 478 (533)
++..+|+.||+.|.|.
T Consensus 866 ~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 866 MRSIIQLAGRVNRHRL 881 (1110)
T ss_pred HHHHHHHhhccccccc
Confidence 9999999999999875
No 159
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=9.4e-12 Score=124.08 Aligned_cols=344 Identities=16% Similarity=0.209 Sum_probs=223.1
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEE-ccCCCch--hHHHHHHHHHHHHhhhhcccCC---------------------CCCc
Q 009512 156 DMPTPVQMQAIPSALSGKSLLVS-ANTGSGK--TASFLVPVISQCANIRLHHSQN---------------------QKNP 211 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~vli~-a~TGsGK--T~~~llp~l~~l~~~~~~~~~~---------------------~~~~ 211 (533)
..+|+.|.+.+..+.+.+|++.. ...+.|+ +..|++.+++|++..+.....+ -..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 46899999999999999998763 3334555 5678999999998643221111 1348
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcCCCC-eE--------EEEEcCC--------chHHHH--------------------
Q 009512 212 LAMVLTPTRELCIQVEEQAKLLGKGLPF-KT--------ALVVGGD--------AMARQV-------------------- 254 (533)
Q Consensus 212 ~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~-~~--------~~~~gg~--------~~~~~~-------------------- 254 (533)
+||||||+|+-|-.+...+..+..+..- +. ..-++|. ..+...
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999988877776443221 11 1112210 011111
Q ss_pred --HHH---HcCCceeecChHHHHHHHHcCC------CCCCCeeEEEEeccchhhhcchHHHHHHHHHhCCC---------
Q 009512 255 --YRI---QQGVELIVGTPGRLIDLLMKHD------IELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL--------- 314 (533)
Q Consensus 255 --~~l---~~~~~Iiv~Tp~~l~~~l~~~~------~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~--------- 314 (533)
..| ....+|+||+|=-|.-++.... --|++|.++|+|.||-|+..+ ...+..|+.+++.
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCCC
Confidence 111 1247899999998877776321 237889999999999888654 5566777777721
Q ss_pred ----------------CcEEEecccCcHHHHHHHHhhcCCeEE---E----E---eCCCCCCCccceEEEEE----ecch
Q 009512 315 ----------------PQILMYSATISQEVEKMSSSISKDIVV---V----S---VGKPNMPNKAVKQLAIW----VESN 364 (533)
Q Consensus 315 ----------------~q~i~~SAT~~~~~~~~~~~~~~~~~~---i----~---~~~~~~~~~~i~~~~~~----~~~~ 364 (533)
+|+++||+-....+..+......+..- . . ++....+...+.+.... -..+
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 278888887766665555544332211 0 0 01111111111111111 1112
Q ss_pred hhHHHHHHHH-Hhcc-CCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 009512 365 KKKQKLFDIL-MSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL 442 (533)
Q Consensus 365 ~k~~~l~~~l-~~~~-~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~ 442 (533)
.+......-+ -... ....-+|||.+|.-.--.+.++++ ...+....+|.-.++..-.++-..|..|..+||+-|.-+
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K-~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~ 612 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMK-KEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA 612 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhh-hhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh
Confidence 2333333222 2211 122357999999999999999998 556888888888888888889999999999999999854
Q ss_pred --cccCCCCCccEEEEcCCCCCHhHH---HHhhcccCCCCC----ccEEEEEecCcCHHHHHHHHHHH
Q 009512 443 --GRGVELLGVRQVIIFDMPNSIKEY---VHQIGRASQMGD----EGTAIVFVNEENKNLFQELVDIL 501 (533)
Q Consensus 443 --~~Gldi~~v~~VI~~~~p~s~~~y---~qriGR~gR~g~----~g~~~~l~~~~~~~~~~~l~~~l 501 (533)
-+-.+|.+|+.||+|.+|..+.-| +.|++|+.-.|+ .-.|.++++.-|.-.+..++..-
T Consensus 613 hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGte 680 (698)
T KOG2340|consen 613 HFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGTE 680 (698)
T ss_pred hhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhHH
Confidence 477899999999999999987655 566677654432 34788899988887777766543
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.40 E-value=3.2e-11 Score=128.28 Aligned_cols=289 Identities=15% Similarity=0.243 Sum_probs=177.6
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHH
Q 009512 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ 253 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 253 (533)
-.+|.||+|||||.+. +..+...+. ....++|+++.++.|+.+....++...-. ++..-.-.++.....
T Consensus 51 V~vVRSpMGTGKTtaL-i~wLk~~l~--------~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i~~- 119 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTAL-IRWLKDALK--------NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYIIDG- 119 (824)
T ss_pred eEEEECCCCCCcHHHH-HHHHHHhcc--------CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeeccccccccc-
Confidence 3688999999999864 444444332 35677999999999999888877654221 222111111111100
Q ss_pred HHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHH------HHHHHHhC--CCCcEEEecccCc
Q 009512 254 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQ------VMQIFRAI--SLPQILMYSATIS 325 (533)
Q Consensus 254 ~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~------i~~i~~~~--~~~q~i~~SAT~~ 325 (533)
...+-+++..+.|.++. ...+.++++||+||+-..+..-|.+. +..++..+ ....+|++-|++.
T Consensus 120 -----~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln 191 (824)
T PF02399_consen 120 -----RPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLN 191 (824)
T ss_pred -----cccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCC
Confidence 12456677777775553 22467799999999997765433222 22222322 5788999999999
Q ss_pred HHHHHHHHhhcC-CeEEEEeCCCCCCCccceEEEEE----------------------------------ecchhhHHHH
Q 009512 326 QEVEKMSSSISK-DIVVVSVGKPNMPNKAVKQLAIW----------------------------------VESNKKKQKL 370 (533)
Q Consensus 326 ~~~~~~~~~~~~-~~~~i~~~~~~~~~~~i~~~~~~----------------------------------~~~~~k~~~l 370 (533)
+...++...+.. +.+.+..++-..+.-.-++-... ..........
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 998888887654 33443332211100000000000 0000112234
Q ss_pred HHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccCCCCC
Q 009512 371 FDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGRGVELLG 450 (533)
Q Consensus 371 ~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~ 450 (533)
+..|......+.++-||+.+...++.+++... .....+..+++..+..+. +. =++++|++-|+++.-|+++-.
T Consensus 272 ~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~-~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~ 344 (824)
T PF02399_consen 272 FSELLARLNAGKNICVFSSTVSFAEIVARFCA-RFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEE 344 (824)
T ss_pred HHHHHHHHhCCCcEEEEeChHHHHHHHHHHHH-hcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccch
Confidence 44555545557789999999999999999887 678888888887665532 11 257999999999999999865
Q ss_pred cc--EEEEc--CCC--CCHhHHHHhhcccCCCCCccEEEEEecCc
Q 009512 451 VR--QVIIF--DMP--NSIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 451 v~--~VI~~--~~p--~s~~~y~qriGR~gR~g~~g~~~~l~~~~ 489 (533)
.. -|.-| ... .++....|++||+-... ....+++++..
T Consensus 345 ~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 345 KHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred hhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 42 23333 222 34556899999997663 45677777654
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.39 E-value=2e-11 Score=139.42 Aligned_cols=120 Identities=24% Similarity=0.336 Sum_probs=102.9
Q ss_pred hhHHHHHHHH-HhccCCCC--CEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC--CCcEEEEe
Q 009512 365 KKKQKLFDIL-MSKQHFTP--PAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG--EVPVIVAT 439 (533)
Q Consensus 365 ~k~~~l~~~l-~~~~~~~~--~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g--~~~VLvaT 439 (533)
.|...+.+++ ......+. ++|||+......+.+...+. ..++....++|.++.++|...++.|.++ ..-++++|
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~-~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ 770 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLK-ALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSL 770 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHH-hcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEe
Confidence 4566666777 45555566 89999999999999999998 5668899999999999999999999996 34457788
Q ss_pred ccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEE
Q 009512 440 GILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVF 485 (533)
Q Consensus 440 ~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l 485 (533)
...+.|+|+...++||+||+++++....|.+.|+.|.|+...+.++
T Consensus 771 kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 771 KAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred cccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 8999999999999999999999999999999999999987654444
No 162
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.36 E-value=3.3e-12 Score=133.95 Aligned_cols=313 Identities=16% Similarity=0.190 Sum_probs=190.5
Q ss_pred HHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHH-HHHhcCCCCe
Q 009512 162 QMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA-KLLGKGLPFK 240 (533)
Q Consensus 162 Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~-~~~~~~~~~~ 240 (533)
-..++.++...+-++|-+.||+|||..+.--+|..++... ......+.+..|++..++.+.+.+ ++-....+-.
T Consensus 383 ~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns-----~g~~~na~v~qprrisaisiaerva~er~e~~g~t 457 (1282)
T KOG0921|consen 383 RSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS-----NGASFNAVVSQPRRISAISLAERVANERGEEVGET 457 (1282)
T ss_pred HHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc-----ccccccceeccccccchHHHHHHHHHhhHHhhccc
Confidence 3455666667788999999999999999888888777532 123344777889998888766543 3333332222
Q ss_pred EEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcc-hHH-HHHHHHHhCCCCcEE
Q 009512 241 TALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-FRD-QVMQIFRAISLPQIL 318 (533)
Q Consensus 241 ~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~-~~~-~i~~i~~~~~~~q~i 318 (533)
++.-.--.+ .--...--|++||-+-+++.+... +..+.++|+||.|..--.+ |.. .++.++...++..++
T Consensus 458 vgy~vRf~S-----a~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~ 529 (1282)
T KOG0921|consen 458 CGYNVRFDS-----ATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVV 529 (1282)
T ss_pred ccccccccc-----cccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhh
Confidence 211111111 111122458899999999988865 4567789999999643221 221 122222222555666
Q ss_pred EecccCcHHH--------------------HHHHHh-hcCCeEEEEeCCCCC----------CCcc--------------
Q 009512 319 MYSATISQEV--------------------EKMSSS-ISKDIVVVSVGKPNM----------PNKA-------------- 353 (533)
Q Consensus 319 ~~SAT~~~~~--------------------~~~~~~-~~~~~~~i~~~~~~~----------~~~~-------------- 353 (533)
++|||+..+. +.+... +.....++....... ....
T Consensus 530 lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~ 609 (1282)
T KOG0921|consen 530 LMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSY 609 (1282)
T ss_pred hhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhh
Confidence 6666654221 111111 111111110000000 0000
Q ss_pred ---ceEEEEEecchhhHHHHHHHHHhc---cCCCCCEEEEEcCcccHHHHHHHHH------hhcCCeEEEEcCCCCHHHH
Q 009512 354 ---VKQLAIWVESNKKKQKLFDILMSK---QHFTPPAVVYVGSRLGADLLSNAIS------VTTGMKALSIHGEKPMKER 421 (533)
Q Consensus 354 ---i~~~~~~~~~~~k~~~l~~~l~~~---~~~~~~~lIF~~s~~~~~~l~~~l~------~~~~~~~~~ih~~~~~~~r 421 (533)
.........+......|.+.+... ..-.+-+++|.+-......|..++. +...++++..|+.....+.
T Consensus 610 ~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eq 689 (1282)
T KOG0921|consen 610 NESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQ 689 (1282)
T ss_pred cchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhh
Confidence 000000011111112233332221 2234579999999999999998885 2335678899999999999
Q ss_pred HHHHHHHhcCCCcEEEEeccccccCCCCCccEEEEcC------------------CCCCHhHHHHhhcccCCCCCccEEE
Q 009512 422 REIMRSFLVGEVPVIVATGILGRGVELLGVRQVIIFD------------------MPNSIKEYVHQIGRASQMGDEGTAI 483 (533)
Q Consensus 422 ~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~------------------~p~s~~~y~qriGR~gR~g~~g~~~ 483 (533)
..+.+....|..+++++|.++...+.+.++..||+.+ ...|....+||.||+||. ++|.|+
T Consensus 690 rkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f 768 (1282)
T KOG0921|consen 690 RKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCF 768 (1282)
T ss_pred hhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccc
Confidence 9999999999999999999999999999988888744 234667789999999998 789999
Q ss_pred EEecC
Q 009512 484 VFVNE 488 (533)
Q Consensus 484 ~l~~~ 488 (533)
.+++.
T Consensus 769 ~lcs~ 773 (1282)
T KOG0921|consen 769 HLCSR 773 (1282)
T ss_pred cccHH
Confidence 88764
No 163
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.30 E-value=2.9e-11 Score=120.02 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=93.0
Q ss_pred HHHHHHHHHh-------------CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHH
Q 009512 161 VQMQAIPSAL-------------SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE 227 (533)
Q Consensus 161 ~Q~~~i~~i~-------------~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~ 227 (533)
+|.+++..++ ..+.+|++.++|+|||..++..+. .+.... .......+|||+|. .+..||.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~----~~~~~~~~LIv~P~-~l~~~W~ 74 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEF----PQRGEKKTLIVVPS-SLLSQWK 74 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCC----TTSS-S-EEEEE-T-TTHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcc----ccccccceeEeecc-chhhhhh
Confidence 5777777663 335689999999999987655443 333211 01112359999999 7779999
Q ss_pred HHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHc---CCCCCCCeeEEEEeccchhhhcchHHH
Q 009512 228 EQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK---HDIELDDIRMFVLDEVDCMLQRGFRDQ 304 (533)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~---~~~~l~~i~~vVvDEah~~~~~~~~~~ 304 (533)
.++.++......++....|+..............+++|+|++.+...... ..+.--++++||+||+|.+-+. ...
T Consensus 75 ~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~ 152 (299)
T PF00176_consen 75 EEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSK 152 (299)
T ss_dssp HHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSH
T ss_pred hhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--ccc
Confidence 99999986545555555554412222222234588999999999811000 0011134899999999998533 344
Q ss_pred HHHHHHhCCCCcEEEecccC
Q 009512 305 VMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 305 i~~i~~~~~~~q~i~~SAT~ 324 (533)
....+..+.....+++|||+
T Consensus 153 ~~~~l~~l~~~~~~lLSgTP 172 (299)
T PF00176_consen 153 RYKALRKLRARYRWLLSGTP 172 (299)
T ss_dssp HHHHHHCCCECEEEEE-SS-
T ss_pred ccccccccccceEEeecccc
Confidence 44555557788999999997
No 164
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.30 E-value=1.5e-11 Score=104.31 Aligned_cols=136 Identities=18% Similarity=0.239 Sum_probs=81.1
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCch
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|+-.++-..+|+|||.-.+--++...+. ++.++|||.|||.++..+.+.++ +.+++.....-+.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~---------~~~rvLvL~PTRvva~em~~aL~----~~~~~~~t~~~~~-- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK---------RRLRVLVLAPTRVVAEEMYEALK----GLPVRFHTNARMR-- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH---------TT--EEEEESSHHHHHHHHHHTT----TSSEEEESTTSS---
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH---------ccCeEEEecccHHHHHHHHHHHh----cCCcccCceeeec--
Confidence 34556889999999998655555555543 57789999999999887666553 3344332211110
Q ss_pred HHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcc--hHHHHHHHHHhCCCCcEEEecccCcHHH
Q 009512 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG--FRDQVMQIFRAISLPQILMYSATISQEV 328 (533)
Q Consensus 251 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~--~~~~i~~i~~~~~~~q~i~~SAT~~~~~ 328 (533)
....+.-|-++|.+.+..++.+ .....++++||+||||-.-... +...+... .......+|++|||+|...
T Consensus 68 -----~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~-~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 68 -----THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLREL-AESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp --------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHH-HHTTS-EEEEEESS-TT--
T ss_pred -----cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHh-hhccCeeEEEEeCCCCCCC
Confidence 1124456779999998887766 5567899999999999643211 22222222 3334568999999998644
No 165
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.28 E-value=7.7e-11 Score=124.34 Aligned_cols=121 Identities=19% Similarity=0.295 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhh---------------------cCCeEEEEcCCCCHHHHHH
Q 009512 365 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVT---------------------TGMKALSIHGEKPMKERRE 423 (533)
Q Consensus 365 ~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~---------------------~~~~~~~ih~~~~~~~r~~ 423 (533)
.|.-.|+++|......+.++|||..|....+.+..+|... .|.....+.|.....+|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 3455677888777777889999999999999999988621 1345668899999999999
Q ss_pred HHHHHhcC-CC---cEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEE
Q 009512 424 IMRSFLVG-EV---PVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVF 485 (533)
Q Consensus 424 ~~~~f~~g-~~---~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l 485 (533)
..+.|.+- +. -.||+|...+-|||+-.++-||+||.-|++.--.|-|=|+.|.|+..-||++
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 99999873 22 3699999999999999999999999999999999999999999987655543
No 166
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.26 E-value=2.8e-10 Score=121.97 Aligned_cols=310 Identities=19% Similarity=0.247 Sum_probs=197.3
Q ss_pred HHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEE
Q 009512 163 MQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTA 242 (533)
Q Consensus 163 ~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~ 242 (533)
.|.+-.+.....-++-+.||-|||+++.+|+.-..+. +..+.+++..--||.--.+|+.++...+++.+.
T Consensus 84 VQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~----------gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG 153 (822)
T COG0653 84 VQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA----------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVG 153 (822)
T ss_pred HHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC----------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCcee
Confidence 4444444444556899999999999999998765543 556889999999999888999999999999999
Q ss_pred EEEcCCchHHHHHHHHcCCceeecChHHH-HHHHHcC------CCCCCCeeEEEEeccchhhh----------c------
Q 009512 243 LVVGGDAMARQVYRIQQGVELIVGTPGRL-IDLLMKH------DIELDDIRMFVLDEVDCMLQ----------R------ 299 (533)
Q Consensus 243 ~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l-~~~l~~~------~~~l~~i~~vVvDEah~~~~----------~------ 299 (533)
....+.+........ .++|..+|-..| .++++.+ ........+.|+||+|.++= .
T Consensus 154 ~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~~ 231 (822)
T COG0653 154 VILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDSS 231 (822)
T ss_pred eccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccCc
Confidence 998888766543332 489999998776 2333221 12244578999999997641 1
Q ss_pred chHHHHHHHHHhC---------CCCcEEEeccc-----------------------------------------------
Q 009512 300 GFRDQVMQIFRAI---------SLPQILMYSAT----------------------------------------------- 323 (533)
Q Consensus 300 ~~~~~i~~i~~~~---------~~~q~i~~SAT----------------------------------------------- 323 (533)
.....+..+...+ ...+.|.++-.
T Consensus 232 ~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ 311 (822)
T COG0653 232 ELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDG 311 (822)
T ss_pred hHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecC
Confidence 1223333333222 11122222211
Q ss_pred --------------------------------------------------------------CcHHHHHHHHhhcCCeEE
Q 009512 324 --------------------------------------------------------------ISQEVEKMSSSISKDIVV 341 (533)
Q Consensus 324 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 341 (533)
...+...+...+..+.+.
T Consensus 312 ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~ 391 (822)
T COG0653 312 EVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVV 391 (822)
T ss_pred eEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCceee
Confidence 111111111111111111
Q ss_pred EEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHH
Q 009512 342 VSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKER 421 (533)
Q Consensus 342 i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r 421 (533)
+....+.. ..-.....+.....|...+++.+......+.|+||-..+.+..+.+++.|. ..+++...+...-...+-
T Consensus 392 iPTnrp~~--R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~-~~~i~h~VLNAk~h~~EA 468 (822)
T COG0653 392 IPTNRPII--RLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLR-KAGIPHNVLNAKNHAREA 468 (822)
T ss_pred ccCCCccc--CCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHH-hcCCCceeeccccHHHHH
Confidence 11111111 000112234455677788888887777788999999999999999999998 889998888877664333
Q ss_pred HHHHHHHhcCC-CcEEEEeccccccCCCCCcc-----------EEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEecCc
Q 009512 422 REIMRSFLVGE-VPVIVATGILGRGVELLGVR-----------QVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 422 ~~~~~~f~~g~-~~VLvaT~~~~~Gldi~~v~-----------~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~~~ 489 (533)
+.+-+ +|. --|-|||++++||-||.--. +||-...-.|-.--.|--||+||.|.+|..-.|++-.
T Consensus 469 ~Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 469 EIIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred HHHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 33332 343 35789999999999986332 3444444455555568889999999999887777654
Q ss_pred C
Q 009512 490 N 490 (533)
Q Consensus 490 ~ 490 (533)
|
T Consensus 546 D 546 (822)
T COG0653 546 D 546 (822)
T ss_pred H
Confidence 3
No 167
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.23 E-value=1.7e-09 Score=121.75 Aligned_cols=314 Identities=16% Similarity=0.204 Sum_probs=171.9
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHH
Q 009512 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 252 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 252 (533)
+..+|+--||||||++....+ ..+... ...|.++||+-++.|-.|+.+.+..+........ ...+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~-------~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~ 341 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL-------PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSE 341 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc-------cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHH
Confidence 468999999999998744332 233321 5688999999999999999999999976543221 2333333
Q ss_pred HHHHHHcC-CceeecChHHHHHHHHcC-CCCCC-CeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCcHHHH
Q 009512 253 QVYRIQQG-VELIVGTPGRLIDLLMKH-DIELD-DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEVE 329 (533)
Q Consensus 253 ~~~~l~~~-~~Iiv~Tp~~l~~~l~~~-~~~l~-~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~~~~~ 329 (533)
....+..+ ..|||+|.++|-...... ...+. +=-+||+|||||- .++..-..+...++....++||+|+-..-.
T Consensus 342 Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 342 LKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhccceEEEeeCCcccccc
Confidence 33344433 489999999997777554 11122 2237899999985 334444444566677899999999832111
Q ss_pred HH-HHhhcCCe-EEEEeCCCCCCCccceEEEEEe------cch-h-----------------------------------
Q 009512 330 KM-SSSISKDI-VVVSVGKPNMPNKAVKQLAIWV------ESN-K----------------------------------- 365 (533)
Q Consensus 330 ~~-~~~~~~~~-~~i~~~~~~~~~~~i~~~~~~~------~~~-~----------------------------------- 365 (533)
.- ......+. ..+.+.........+...+... ... .
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 11 01111111 1111111100000000000000 000 0
Q ss_pred -hH----HHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhc----------C--------Ce----EEEEcCCCCH
Q 009512 366 -KK----QKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTT----------G--------MK----ALSIHGEKPM 418 (533)
Q Consensus 366 -k~----~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~----------~--------~~----~~~ih~~~~~ 418 (533)
+. ..+.+..........++.+.+.++..+..+.+...... + .. ....|... .
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-K 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-H
Confidence 00 01111111112334577777777775555544432100 0 00 00001122 2
Q ss_pred HHHHHHHHHH--hcCCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCC----ccEEEEEecCcCHH
Q 009512 419 KERREIMRSF--LVGEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGD----EGTAIVFVNEENKN 492 (533)
Q Consensus 419 ~~r~~~~~~f--~~g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~----~g~~~~l~~~~~~~ 492 (533)
..+......| .....++||.++++-.|.|.|.+.+ +-+|-|.-.-..+|.+.|+.|.-. .|..+-|.. -..
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~T-mYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g--l~e 654 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNT-LYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG--LKE 654 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccce-EEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc--hHH
Confidence 2334444443 3468999999999999999998754 556777777888999999999622 254544444 334
Q ss_pred HHHHHHHHHHhcC
Q 009512 493 LFQELVDILKSSG 505 (533)
Q Consensus 493 ~~~~l~~~l~~~~ 505 (533)
.+.+.++.+.+.+
T Consensus 655 ~l~~Al~~Y~~~~ 667 (962)
T COG0610 655 ALKKALKLYSNEG 667 (962)
T ss_pred HHHHHHHHhhccc
Confidence 4444444444433
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.21 E-value=2.3e-10 Score=112.20 Aligned_cols=73 Identities=22% Similarity=0.219 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 157 MPTPVQMQAIPS----ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~~~Q~~~i~~----i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|+|.|.+.+.. +..|.++++.||||+|||+++++|++.++...+.. ..+.+++|+++|..+..|....+++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~----~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER----IQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc----ccccceeEEeccHHHHHHHHHHHHh
Confidence 469999995544 45889999999999999999999999876642110 0234799999999998887777766
Q ss_pred H
Q 009512 233 L 233 (533)
Q Consensus 233 ~ 233 (533)
+
T Consensus 84 ~ 84 (289)
T smart00489 84 L 84 (289)
T ss_pred c
Confidence 5
No 169
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.21 E-value=2.3e-10 Score=112.20 Aligned_cols=73 Identities=22% Similarity=0.219 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHH----HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 157 MPTPVQMQAIPS----ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 157 ~p~~~Q~~~i~~----i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
.|+|.|.+.+.. +..|.++++.||||+|||+++++|++.++...+.. ..+.+++|+++|..+..|....+++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~----~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER----IQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc----ccccceeEEeccHHHHHHHHHHHHh
Confidence 469999995544 45889999999999999999999999876642110 0234799999999998887777766
Q ss_pred H
Q 009512 233 L 233 (533)
Q Consensus 233 ~ 233 (533)
+
T Consensus 84 ~ 84 (289)
T smart00488 84 L 84 (289)
T ss_pred c
Confidence 5
No 170
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.87 E-value=5.1e-08 Score=93.28 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=97.0
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhc
Q 009512 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
..|++.|..++-.+..|+ |+...||=|||++..+|+..+.+. |..|-|++.+..||..=.+++..+..
T Consensus 76 ~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~----------G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 76 LRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ----------GKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp ----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT----------SS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh----------cCCcEEEeccHHHhhccHHHHHHHHH
Confidence 388999999998887776 999999999999998888777653 56699999999999998899999999
Q ss_pred CCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHH-HHHHcCC------CCCCCeeEEEEeccchhh
Q 009512 236 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLI-DLLMKHD------IELDDIRMFVLDEVDCML 297 (533)
Q Consensus 236 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~-~~l~~~~------~~l~~i~~vVvDEah~~~ 297 (533)
.+|+.+..+.++.+........ .++|+.+|...|. ++++.+- .....+.++||||+|.++
T Consensus 144 ~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 144 FLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999988755432222 3689999999984 3444321 114678999999999876
No 171
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.79 E-value=4.7e-10 Score=120.37 Aligned_cols=261 Identities=13% Similarity=0.154 Sum_probs=153.4
Q ss_pred CCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHH-HHHHHHHH
Q 009512 156 DMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ-VEEQAKLL 233 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~-~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q-~~~~~~~~ 233 (533)
..+.|.|.+.+-.++ ...++++.+|||+|||.+|.+.++..+.. ..+.+++|++|-.+|... ..+|-+++
T Consensus 926 ~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~--------~p~~kvvyIap~kalvker~~Dw~~r~ 997 (1230)
T KOG0952|consen 926 KYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY--------YPGSKVVYIAPDKALVKERSDDWSKRD 997 (1230)
T ss_pred cccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc--------CCCccEEEEcCCchhhcccccchhhhc
Confidence 356677877776655 55688999999999999999988776544 456789999999999887 44555555
Q ss_pred hcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHc--CCCCCCCeeEEEEeccchhhhcchHHHHHHHHHh
Q 009512 234 GKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK--HDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA 311 (533)
Q Consensus 234 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~--~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~ 311 (533)
... |++++-+.|...... .. ....+++|+||+++..+.+. ...-+.+++.+|+||.|.+.+ +.++.++.+..+
T Consensus 998 ~~~-g~k~ie~tgd~~pd~--~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr 1072 (1230)
T KOG0952|consen 998 ELP-GIKVIELTGDVTPDV--KA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSR 1072 (1230)
T ss_pred ccC-CceeEeccCccCCCh--hh-eecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeec
Confidence 444 788888887655442 22 24589999999999888874 445688999999999998765 345555555444
Q ss_pred C--------CCCcEEEecccCcHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEE-----EEec-chhhHHHHHHHHHhc
Q 009512 312 I--------SLPQILMYSATISQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLA-----IWVE-SNKKKQKLFDILMSK 377 (533)
Q Consensus 312 ~--------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~-----~~~~-~~~k~~~l~~~l~~~ 377 (533)
. +..+.+++|.-+. ....++.++..... ........+.+....+. .++. ...+..--+..+...
T Consensus 1073 ~n~~s~~t~~~vr~~glsta~~-na~dla~wl~~~~~-~nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~ 1150 (1230)
T KOG0952|consen 1073 MNYISSQTEEPVRYLGLSTALA-NANDLADWLNIKDM-YNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTH 1150 (1230)
T ss_pred cccCccccCcchhhhhHhhhhh-ccHHHHHHhCCCCc-CCCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcC
Confidence 4 2345566554332 22334443332221 11100001111000000 0111 111222233333333
Q ss_pred cCCCCCEEEEEcCcccHHHHHHHHHhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCc
Q 009512 378 QHFTPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVP 434 (533)
Q Consensus 378 ~~~~~~~lIF~~s~~~~~~l~~~l~~~---~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~ 434 (533)
....|+|||+.+++....-+..|-.. ..-+..+++-+ ..+-+.++...+...++
T Consensus 1151 -sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1151 -SPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred -CCCCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccchh
Confidence 34569999999987665544443211 12223344433 55666666666655443
No 172
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.77 E-value=1.3e-07 Score=98.66 Aligned_cols=110 Identities=14% Similarity=0.248 Sum_probs=88.7
Q ss_pred cCCCCCEEEEEcCcccHHHHHHHHHhhc-----------------CCeEEEEcCCCCHHHHHHHHHHHhcC-C--CcEEE
Q 009512 378 QHFTPPAVVYVGSRLGADLLSNAISVTT-----------------GMKALSIHGEKPMKERREIMRSFLVG-E--VPVIV 437 (533)
Q Consensus 378 ~~~~~~~lIF~~s~~~~~~l~~~l~~~~-----------------~~~~~~ih~~~~~~~r~~~~~~f~~g-~--~~VLv 437 (533)
...+.++|||..+....+.+...|.+.. +...+-+.|..+..+|+..++.|.+- . .-+|+
T Consensus 716 ~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfll 795 (1387)
T KOG1016|consen 716 TQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLL 795 (1387)
T ss_pred cccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeee
Confidence 3345689999999999998888886211 12234577888999999999999873 2 35788
Q ss_pred EeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEEEec
Q 009512 438 ATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIVFVN 487 (533)
Q Consensus 438 aT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~l~~ 487 (533)
+|....-|||+-..+-+|+||.-++..--.|.+-|+-|.|+...|+++--
T Consensus 796 strag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRl 845 (1387)
T KOG1016|consen 796 STRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRL 845 (1387)
T ss_pred hhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEee
Confidence 99999999999999999999998888888999999999999888887644
No 173
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.70 E-value=2e-07 Score=102.66 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=58.0
Q ss_pred CCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCC-----C--cc---EEEEEecCcCHHHHHHHHHHH
Q 009512 432 EVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMG-----D--EG---TAIVFVNEENKNLFQELVDIL 501 (533)
Q Consensus 432 ~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g-----~--~g---~~~~l~~~~~~~~~~~l~~~l 501 (533)
..+.|++-+.+.+|+|-|++-++.-+.-..|...-.|.+||..|.- . .+ .-.++.+....+++..|.+-.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999988888888888899999999998852 1 11 233455677788888888777
Q ss_pred Hhc
Q 009512 502 KSS 504 (533)
Q Consensus 502 ~~~ 504 (533)
+..
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 664
No 174
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.62 E-value=4.2e-06 Score=89.08 Aligned_cols=74 Identities=19% Similarity=0.288 Sum_probs=59.4
Q ss_pred CCCcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCC--Ccc-----------EEEEEecCcCHHHHHHH
Q 009512 431 GEVPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMG--DEG-----------TAIVFVNEENKNLFQEL 497 (533)
Q Consensus 431 g~~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g--~~g-----------~~~~l~~~~~~~~~~~l 497 (533)
...+.|++-.++-+|+|-|+|=+++-+....|...=.|.+||..|.. ..| .-.++++..++.+...|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 35789999999999999999999999999999999999999999852 222 33456777888888777
Q ss_pred HHHHHhc
Q 009512 498 VDILKSS 504 (533)
Q Consensus 498 ~~~l~~~ 504 (533)
.+-+...
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 7666553
No 175
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.55 E-value=2.9e-06 Score=93.52 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=52.8
Q ss_pred cCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-CCCcEEEecccC
Q 009512 259 QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATI 324 (533)
Q Consensus 259 ~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~ 324 (533)
....|+++||..|..=+..+.+++..+..|||||||++....-+..+.+++..- +..-+.+|||.+
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred hcCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 346799999999988888899999999999999999987655556666666554 456688888874
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.38 E-value=2.7e-06 Score=80.96 Aligned_cols=73 Identities=25% Similarity=0.320 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 158 PTPVQMQAIPSALSGKS-LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 158 p~~~Q~~~i~~i~~g~~-vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
+++.|.+|+..+++... .+|.||+|+|||.+. ..++..+..... ......+.++|+++|+..-+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l-~~~i~~~~~~~~-~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTL-ASIIAQLLQRFK-SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHH-HHHHHHH--------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHH-HHHHHHhccchh-hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 57899999999999998 999999999999643 334444411000 00125678899999999999988777766
No 177
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.36 E-value=1.1e-06 Score=94.57 Aligned_cols=120 Identities=22% Similarity=0.245 Sum_probs=98.3
Q ss_pred hhhHHHHHHHHHhccCCC-CCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcE-EEEec
Q 009512 364 NKKKQKLFDILMSKQHFT-PPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVG-EVPV-IVATG 440 (533)
Q Consensus 364 ~~k~~~l~~~l~~~~~~~-~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g-~~~V-LvaT~ 440 (533)
..+...+..++....... ++++||+.-...+..+...+. ..+.....+.|.|+...|...+..|..+ ...| +++..
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~-~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slk 599 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLF-FKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLK 599 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhh-hcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHH
Confidence 344455555555433222 489999999999999988887 7788888999999999999999999965 3344 56788
Q ss_pred cccccCCCCCccEEEEcCCCCCHhHHHHhhcccCCCCCccEEEE
Q 009512 441 ILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRASQMGDEGTAIV 484 (533)
Q Consensus 441 ~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~gR~g~~g~~~~ 484 (533)
..+-|+++..+.+|+..|+.+++..--|.|-|+.|.|+...+.+
T Consensus 600 ag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 600 AGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred HhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 88999999999999999999999999999999999998765554
No 178
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.33 E-value=1.1e-05 Score=77.63 Aligned_cols=172 Identities=16% Similarity=0.184 Sum_probs=112.0
Q ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh----------CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCC
Q 009512 140 CSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL----------SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQK 209 (533)
Q Consensus 140 ~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~----------~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 209 (533)
..||+.++.. ..++..|.+++-... .+.-.++-..||.||--...--++..++. .
T Consensus 26 ~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~---------G 90 (303)
T PF13872_consen 26 LHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR---------G 90 (303)
T ss_pred cCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc---------C
Confidence 4677765542 246788988876553 23457889999999997766666666664 3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcC---CCCC----
Q 009512 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH---DIEL---- 282 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~---~~~l---- 282 (533)
..++|+++.+..|.....+.++.++.. .+.+..+..- .... ...-...|+++|+..|....... ...+
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~-~~~~---~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~ 165 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKF-KYGD---IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLV 165 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhh-ccCc---CCCCCCCccchhHHHHHhHHhccCCccchHHHHH
Confidence 456999999999998888888877543 2222222110 0000 01113459999999987775421 1111
Q ss_pred ----CCe-eEEEEeccchhhhcc--------hHHHHHHHHHhCCCCcEEEecccCcHHHHHH
Q 009512 283 ----DDI-RMFVLDEVDCMLQRG--------FRDQVMQIFRAISLPQILMYSATISQEVEKM 331 (533)
Q Consensus 283 ----~~i-~~vVvDEah~~~~~~--------~~~~i~~i~~~~~~~q~i~~SAT~~~~~~~~ 331 (533)
.++ .+||+||||.+.+.. .+..+..+-.+++..+++..|||...+..++
T Consensus 166 ~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~Nm 227 (303)
T PF13872_consen 166 DWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEPRNM 227 (303)
T ss_pred HHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCCcee
Confidence 122 489999999987643 2245666777789999999999987655544
No 179
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.28 E-value=2e-06 Score=77.40 Aligned_cols=105 Identities=21% Similarity=0.378 Sum_probs=73.2
Q ss_pred CCCEEEEEcCcccHHHHHHHHHhhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec--cccccCCCCC--ccE
Q 009512 381 TPPAVVYVGSRLGADLLSNAISVTT---GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG--ILGRGVELLG--VRQ 453 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~~~---~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~--~~~~Gldi~~--v~~ 453 (533)
.+.+|||++|....+.+.+.+.... ++.+. .. ...++..+++.|+.+.-.||+++. .+++|+|+++ ++.
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~--~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~ 84 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF--VQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRA 84 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE--ES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceee--ec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhe
Confidence 4689999999999999999987322 33332 22 244788999999999999999998 9999999996 778
Q ss_pred EEEcCCCCC----H--------------------------hHHHHhhcccCCCCCccEEEEEecCc
Q 009512 454 VIIFDMPNS----I--------------------------KEYVHQIGRASQMGDEGTAIVFVNEE 489 (533)
Q Consensus 454 VI~~~~p~s----~--------------------------~~y~qriGR~gR~g~~g~~~~l~~~~ 489 (533)
||...+|.. + ....|.+||+-|...+--+++++++.
T Consensus 85 vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~R 150 (167)
T PF13307_consen 85 VIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDSR 150 (167)
T ss_dssp EEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESGG
T ss_pred eeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcCc
Confidence 999887731 1 12368899999987765566777764
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.28 E-value=2.7e-06 Score=78.24 Aligned_cols=139 Identities=16% Similarity=0.220 Sum_probs=71.2
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH-------HH
Q 009512 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV-------EE 228 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~-------~~ 228 (533)
...++.|..++.+++...-+++.||.|+|||+.++..++..+.. +...+++|+-|..+....+ .+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~--------g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE--------GEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT--------TS-SEEEEEE-S--TT----SS------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh--------CCCcEEEEEecCCCCccccccCCCCHHH
Confidence 34578999999999988889999999999999988888877764 4456788888886541110 00
Q ss_pred ----HHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHH
Q 009512 229 ----QAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQ 304 (533)
Q Consensus 229 ----~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~ 304 (533)
++..+...+.. +.+.. ....+.....|-+..+..+ ++ ..++ -.+||+|||+.+. ..+
T Consensus 75 K~~p~~~p~~d~l~~----~~~~~----~~~~~~~~~~Ie~~~~~~i-----RG-rt~~-~~~iIvDEaQN~t----~~~ 135 (205)
T PF02562_consen 75 KMEPYLRPIYDALEE----LFGKE----KLEELIQNGKIEIEPLAFI-----RG-RTFD-NAFIIVDEAQNLT----PEE 135 (205)
T ss_dssp ---TTTHHHHHHHTT----TS-TT----CHHHHHHTTSEEEEEGGGG-----TT---B--SEEEEE-SGGG------HHH
T ss_pred HHHHHHHHHHHHHHH----HhChH----hHHHHhhcCeEEEEehhhh-----cC-cccc-ceEEEEecccCCC----HHH
Confidence 00000000000 00111 1122223334444443222 22 1233 2799999999763 567
Q ss_pred HHHHHHhCC-CCcEEEec
Q 009512 305 VMQIFRAIS-LPQILMYS 321 (533)
Q Consensus 305 i~~i~~~~~-~~q~i~~S 321 (533)
+..++.++. +.+++++.
T Consensus 136 ~k~ilTR~g~~skii~~G 153 (205)
T PF02562_consen 136 LKMILTRIGEGSKIIITG 153 (205)
T ss_dssp HHHHHTTB-TT-EEEEEE
T ss_pred HHHHHcccCCCcEEEEec
Confidence 888888884 45555543
No 181
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.20 E-value=1.5e-05 Score=73.96 Aligned_cols=151 Identities=23% Similarity=0.344 Sum_probs=97.2
Q ss_pred CcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC---CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCce
Q 009512 136 SFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALS---GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPL 212 (533)
Q Consensus 136 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~---g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~ 212 (533)
.|+....|++++=.+... .-.++.|.++...+.+ |.|.+.+.-+|.|||.+ ++|++..++. ++..-
T Consensus 4 ~w~p~~~P~wLl~E~e~~--iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LA--------dg~~L 72 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIESN--ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALA--------DGSRL 72 (229)
T ss_pred CCCchhChHHHHHHHHcC--ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHc--------CCCcE
Confidence 566677788877666532 4678999999988884 67899999999999986 8898888775 34455
Q ss_pred EEEEcccHHHHHHHHHHHHH-HhcCCCCeEEEE--EcCCch----HHHHH----HHHcCCceeecChHHHHHHHHcC---
Q 009512 213 AMVLTPTRELCIQVEEQAKL-LGKGLPFKTALV--VGGDAM----ARQVY----RIQQGVELIVGTPGRLIDLLMKH--- 278 (533)
Q Consensus 213 ~Lil~Ptr~L~~Q~~~~~~~-~~~~~~~~~~~~--~gg~~~----~~~~~----~l~~~~~Iiv~Tp~~l~~~l~~~--- 278 (533)
+.+++|. +|..|....+.. ++.-++-++..+ .-.... ...+. .......|+++||+.++++....
T Consensus 73 vrviVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~ 151 (229)
T PF12340_consen 73 VRVIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLER 151 (229)
T ss_pred EEEEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHH
Confidence 7777775 688888777654 443333222221 111111 11121 23345679999999987765321
Q ss_pred ----CC-----------CCCCeeEEEEeccchhhh
Q 009512 279 ----DI-----------ELDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 279 ----~~-----------~l~~i~~vVvDEah~~~~ 298 (533)
.. .+++...=|+||+|..+.
T Consensus 152 l~~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 152 LQDGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred HHhcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 10 023344568888887654
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.13 E-value=8.2e-06 Score=75.48 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHH
Q 009512 157 MPTPVQMQAIPSALSGK--SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ 229 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~--~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~ 229 (533)
++++-|.+++..+++.. -.++.|+.|+|||++ +..+...+.. .+.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~---------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA---------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH---------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh---------CCCeEEEECCcHHHHHHHHHh
Confidence 36789999999997433 467889999999985 3344444433 357799999998887765444
No 183
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.11 E-value=1.4e-05 Score=81.26 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=68.5
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHH
Q 009512 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ 253 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 253 (533)
-++|.|..|||||+.++-. +..+. ....+..+++++++..|...+...+..-...
T Consensus 3 v~~I~G~aGTGKTvla~~l-~~~l~-------~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNL-AKELQ-------NSEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHH-HHHhh-------ccccCCceEEEEecchHHHHHHHHHhhhccc-----------------
Confidence 4789999999999875433 33331 1145677999999999988777666544200
Q ss_pred HHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcc-------hHHHHHHHHHh
Q 009512 254 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-------FRDQVMQIFRA 311 (533)
Q Consensus 254 ~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~-------~~~~i~~i~~~ 311 (533)
......+..+..+.............+++|||||||++...+ ...++..++.+
T Consensus 58 -----~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 -----KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -----chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 011233444444444333223456789999999999998731 24667777666
No 184
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.96 E-value=3.9e-05 Score=79.66 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=65.2
Q ss_pred HHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHH
Q 009512 149 NIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEE 228 (533)
Q Consensus 149 ~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~ 228 (533)
++...|+.+++.-|..|+..+++..=.||++|+|+|||.+..- ++-|+.. .....+|+++|+..-+.|+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~--------~~~~~VLvcApSNiAVDqLae 472 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR--------QHAGPVLVCAPSNIAVDQLAE 472 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHH--------hcCCceEEEcccchhHHHHHH
Confidence 4555678899999999999999999999999999999987543 4445544 245669999999999999888
Q ss_pred HHHHHhcCCCCeEEEEE
Q 009512 229 QAKLLGKGLPFKTALVV 245 (533)
Q Consensus 229 ~~~~~~~~~~~~~~~~~ 245 (533)
.+.+- +++++-+.
T Consensus 473 KIh~t----gLKVvRl~ 485 (935)
T KOG1802|consen 473 KIHKT----GLKVVRLC 485 (935)
T ss_pred HHHhc----CceEeeee
Confidence 77664 45554443
No 185
>PRK10536 hypothetical protein; Provisional
Probab=97.95 E-value=0.00016 Score=68.52 Aligned_cols=140 Identities=10% Similarity=0.053 Sum_probs=79.4
Q ss_pred CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH-----------
Q 009512 154 GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL----------- 222 (533)
Q Consensus 154 g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L----------- 222 (533)
++...+..|...+.++..+..+++.|++|+|||+.+...++..+.. +.-.+++|.-|+.+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~--------~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH--------KDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc--------CCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 4556678999999999888889999999999999877766655543 223456666676542
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHH--cCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcc
Q 009512 223 CIQVEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQ--QGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG 300 (533)
Q Consensus 223 ~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~--~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~ 300 (533)
.+.+.-++..+...+.. +.+. .....+. ....|-|.... +++.. .+. -++||+|||+.+.
T Consensus 128 ~eK~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l~----ymRGr--tl~-~~~vIvDEaqn~~--- 189 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPFA----YMRGR--TFE-NAVVILDEAQNVT--- 189 (262)
T ss_pred HHHHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecHH----HhcCC--ccc-CCEEEEechhcCC---
Confidence 12222233332221110 0111 1112111 12335555432 22222 232 3799999999763
Q ss_pred hHHHHHHHHHhCCCCcEEEe
Q 009512 301 FRDQVMQIFRAISLPQILMY 320 (533)
Q Consensus 301 ~~~~i~~i~~~~~~~q~i~~ 320 (533)
..++..++.++...-.+.+
T Consensus 190 -~~~~k~~ltR~g~~sk~v~ 208 (262)
T PRK10536 190 -AAQMKMFLTRLGENVTVIV 208 (262)
T ss_pred -HHHHHHHHhhcCCCCEEEE
Confidence 3677788888744333333
No 186
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.88 E-value=3.4e-05 Score=79.69 Aligned_cols=63 Identities=25% Similarity=0.378 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHH
Q 009512 157 MPTPVQMQAIPSALSGKS-LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ 229 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~-vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~ 229 (533)
.+.+-|..|+....+.++ .++.||+|+|||... .-++.++.. .+.++|+++||.+-+..+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~Tl-vEiI~qlvk---------~~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTL-VEIISQLVK---------QKKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeH-HHHHHHHHH---------cCCeEEEEcCchHHHHHHHHH
Confidence 567899999999998765 678999999999864 444455443 468899999999998887774
No 187
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.83 E-value=0.00012 Score=75.46 Aligned_cols=141 Identities=16% Similarity=0.217 Sum_probs=76.6
Q ss_pred EEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHH-HHHhcCCCCeEEEEEcCCchH----
Q 009512 177 VSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA-KLLGKGLPFKTALVVGGDAMA---- 251 (533)
Q Consensus 177 i~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~-~~~~~~~~~~~~~~~gg~~~~---- 251 (533)
..++||||||++....++... . .+....|+.|..-........-+ ..+....=+.-...++|....
T Consensus 2 f~matgsgkt~~ma~lil~~y-~--------kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkv 72 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECY-K--------KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKV 72 (812)
T ss_pred cccccCCChhhHHHHHHHHHH-H--------hchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeee
Confidence 357899999998655555433 2 22334667666555444322211 111000001111111111110
Q ss_pred HHHHHHHcCCceeecChHHHHHHHHcCC---CC---CCCee-EEEEeccchhhh-------------cchHHHHHHHHHh
Q 009512 252 RQVYRIQQGVELIVGTPGRLIDLLMKHD---IE---LDDIR-MFVLDEVDCMLQ-------------RGFRDQVMQIFRA 311 (533)
Q Consensus 252 ~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~---~~---l~~i~-~vVvDEah~~~~-------------~~~~~~i~~i~~~ 311 (533)
........+.+|.++|.+.|...+.+.. +. +.+.. +++-||||++.. ..+...+..-++.
T Consensus 73 n~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~ 152 (812)
T COG3421 73 NNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQ 152 (812)
T ss_pred cccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhc
Confidence 0011123457899999999988776532 22 33344 457799999853 2255555555566
Q ss_pred CCCCcEEEecccCcH
Q 009512 312 ISLPQILMYSATISQ 326 (533)
Q Consensus 312 ~~~~q~i~~SAT~~~ 326 (533)
-++.-++.+|||+|.
T Consensus 153 nkd~~~lef~at~~k 167 (812)
T COG3421 153 NKDNLLLEFSATIPK 167 (812)
T ss_pred CCCceeehhhhcCCc
Confidence 577788899999994
No 188
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.81 E-value=0.00016 Score=78.79 Aligned_cols=67 Identities=25% Similarity=0.314 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 156 DMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g-~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
..+++.|.+|+..++.. ..++|.||+|+|||.+. ..++.++.. .+.++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~---------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVK---------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHH---------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 46789999999999876 67889999999999753 344444442 355899999999998888777655
No 189
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.80 E-value=0.00019 Score=77.17 Aligned_cols=139 Identities=18% Similarity=0.293 Sum_probs=85.8
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHhhhh---------cc-------cC----------
Q 009512 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCANIRL---------HH-------SQ---------- 206 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~----~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~---------~~-------~~---------- 206 (533)
+|+|.|...+..++ ...+.++..|||+|||++.+-..+.+...++. .. ..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 67899988776665 66789999999999998765444443332220 00 00
Q ss_pred C------CCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcC---------------------------------
Q 009512 207 N------QKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGG--------------------------------- 247 (533)
Q Consensus 207 ~------~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg--------------------------------- 247 (533)
. -..|++.|-.-|-.-..|+.+++++..-. .+...+.+-
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 0 01356677767766678888888776433 222222110
Q ss_pred --------------Cc---hH--------------HHHHHHHcCCceeecChHHHHHHHHcCC--CCCCCeeEEEEeccc
Q 009512 248 --------------DA---MA--------------RQVYRIQQGVELIVGTPGRLIDLLMKHD--IELDDIRMFVLDEVD 294 (533)
Q Consensus 248 --------------~~---~~--------------~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~--~~l~~i~~vVvDEah 294 (533)
.. .. -....+.+.++||+|-+..|++-..+.. ++|++ .+||+||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAH 257 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAH 257 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccc
Confidence 00 00 0012334457899999999998887765 44433 689999999
Q ss_pred hhhh
Q 009512 295 CMLQ 298 (533)
Q Consensus 295 ~~~~ 298 (533)
.|.+
T Consensus 258 NiEd 261 (945)
T KOG1132|consen 258 NIED 261 (945)
T ss_pred cHHH
Confidence 8754
No 190
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.77 E-value=0.00033 Score=75.50 Aligned_cols=139 Identities=16% Similarity=0.209 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCC
Q 009512 159 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP 238 (533)
Q Consensus 159 ~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~ 238 (533)
.++|+.|+...+.++-++|.|++|+|||++. .-++..+... ......++++++||..-|..+.+.+......++
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~-----~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~ 227 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQL-----ADGERCRIRLAAPTGKAAARLTESLGKALRQLP 227 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHh-----cCCCCcEEEEECCcHHHHHHHHHHHHhhhhccc
Confidence 5899999999999999999999999999853 3333333321 012345789999999888887776655443332
Q ss_pred CeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHH------cCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC
Q 009512 239 FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLM------KHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 239 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~------~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~ 312 (533)
.. . ........-..|..+|+.... .+..+.-.+++|||||+-++. ...+..+++.+
T Consensus 228 ~~-----------~---~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al 289 (615)
T PRK10875 228 LT-----------D---EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDAL 289 (615)
T ss_pred cc-----------h---hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhc
Confidence 11 0 000111112334334332211 111223356899999999652 34555666666
Q ss_pred C-CCcEEEec
Q 009512 313 S-LPQILMYS 321 (533)
Q Consensus 313 ~-~~q~i~~S 321 (533)
+ ..++|++.
T Consensus 290 ~~~~rlIlvG 299 (615)
T PRK10875 290 PPHARVIFLG 299 (615)
T ss_pred ccCCEEEEec
Confidence 4 45666654
No 191
>PF13245 AAA_19: Part of AAA domain
Probab=97.73 E-value=0.00018 Score=55.25 Aligned_cols=60 Identities=27% Similarity=0.467 Sum_probs=38.5
Q ss_pred HHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009512 165 AIPSALSGKS-LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 165 ~i~~i~~g~~-vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
++...+.+.+ ++|.||+|||||...+-.+ ..+.... ... +.++|+++||+..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i-~~l~~~~----~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARI-AELLAAR----ADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHH-HHHHHHh----cCC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443333444 5569999999997644333 3333210 112 677999999999999877766
No 192
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.69 E-value=0.0006 Score=73.36 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCC
Q 009512 159 TPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLP 238 (533)
Q Consensus 159 ~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~ 238 (533)
.++|+.++..++.++-.+|.|+.|+|||++ +..++..+..... ...+.++++++||-.-+..+.+........++
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~----~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~ 221 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSP----KQGKLRIALAAPTGKAAARLAESLRKAVKNLA 221 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhcc----ccCCCcEEEECCcHHHHHHHHHHHHhhhcccc
Confidence 379999999999999999999999999985 3333333332110 01135799999998888877666554332221
Q ss_pred CeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHH------cCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC
Q 009512 239 FKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLM------KHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 239 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~------~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~ 312 (533)
.. . .......+-..|..+|+.... .+..+.-.+++||||||-++. ...+..+++.+
T Consensus 222 ~~----------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al 283 (586)
T TIGR01447 222 AA----------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKAL 283 (586)
T ss_pred cc----------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhc
Confidence 10 0 000111122344444433221 111223468899999999653 34555667766
Q ss_pred C-CCcEEEec
Q 009512 313 S-LPQILMYS 321 (533)
Q Consensus 313 ~-~~q~i~~S 321 (533)
+ ..++|++.
T Consensus 284 ~~~~rlIlvG 293 (586)
T TIGR01447 284 PPNTKLILLG 293 (586)
T ss_pred CCCCEEEEEC
Confidence 4 45666654
No 193
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.54 E-value=0.0011 Score=73.35 Aligned_cols=63 Identities=19% Similarity=0.225 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009512 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
..+++.|.+|+..+..++-+++.|+.|+|||++. -.++..+... +....+++++||-.-|..+
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~-------~~~~~v~l~ApTg~AA~~L 384 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL-------GGLLPVGLAAPTGRAAKRL 384 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc-------CCCceEEEEeCchHHHHHH
Confidence 4789999999999998889999999999999853 3333333220 1125688899997776643
No 194
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.39 E-value=0.0018 Score=72.00 Aligned_cols=121 Identities=12% Similarity=0.111 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHhCC-CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 156 DMPTPVQMQAIPSALSG-KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g-~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
..+++-|.+++..++.+ +-+++.|+.|+|||+. +-.+.. ++. ..+..+++++||--.+..+.+
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~-~~~--------~~g~~V~~~ApTg~Aa~~L~~------ 414 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAARE-AWE--------AAGYRVIGAALSGKAAEGLQA------ 414 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHH-HHH--------hCCCeEEEEeCcHHHHHHHHh------
Confidence 36899999999998864 5678999999999975 233333 332 236779999999666554332
Q ss_pred cCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC--
Q 009512 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-- 312 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-- 312 (533)
..++.. .|..+++.-+......+...++|||||+-++....+ ..++...
T Consensus 415 -~~g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~~~----~~Ll~~~~~ 465 (744)
T TIGR02768 415 -ESGIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSRQM----ARVLKEAEE 465 (744)
T ss_pred -ccCCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCHHHH----HHHHHHHHh
Confidence 122211 122222111122233456788999999997654333 3333322
Q ss_pred CCCcEEEec
Q 009512 313 SLPQILMYS 321 (533)
Q Consensus 313 ~~~q~i~~S 321 (533)
...++|++.
T Consensus 466 ~~~kliLVG 474 (744)
T TIGR02768 466 AGAKVVLVG 474 (744)
T ss_pred cCCEEEEEC
Confidence 355666654
No 195
>PRK08116 hypothetical protein; Validated
Probab=97.38 E-value=0.0062 Score=59.20 Aligned_cols=46 Identities=13% Similarity=0.219 Sum_probs=27.5
Q ss_pred CCeeEEEEeccchh--hhcchHHHHHHHHHhC--CCCcEEEecccCcHHHH
Q 009512 283 DDIRMFVLDEVDCM--LQRGFRDQVMQIFRAI--SLPQILMYSATISQEVE 329 (533)
Q Consensus 283 ~~i~~vVvDEah~~--~~~~~~~~i~~i~~~~--~~~q~i~~SAT~~~~~~ 329 (533)
.+.++||+||++.. .++ ....+..++... ....+|+.|...+.++.
T Consensus 177 ~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 177 VNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred cCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 45678999999642 222 234455555543 44567777776666543
No 196
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.32 E-value=0.00075 Score=67.22 Aligned_cols=123 Identities=23% Similarity=0.184 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCC
Q 009512 158 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL 237 (533)
Q Consensus 158 p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~ 237 (533)
+++-|.+++.. ...+++|.|..|||||.+.+.-++..+.... ....++|++++|+..+..+.+.+.......
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~------~~~~~Il~lTft~~aa~e~~~ri~~~l~~~ 72 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG------VPPERILVLTFTNAAAQEMRERIRELLEEE 72 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS------STGGGEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc------CChHHheecccCHHHHHHHHHHHHHhcCcc
Confidence 46789999987 7788999999999999976554444443311 234569999999999999988887754322
Q ss_pred CCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcC-CCCC-CCeeEEEEeccc
Q 009512 238 PFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH-DIEL-DDIRMFVLDEVD 294 (533)
Q Consensus 238 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~-~~~l-~~i~~vVvDEah 294 (533)
.... ...............+.|+|...+..-+.+. .... -.-.+-++|+..
T Consensus 73 ~~~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 73 QQES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CHCC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 1000 0000111122234678899988885544331 1111 112356677766
No 197
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.32 E-value=0.0023 Score=72.45 Aligned_cols=122 Identities=16% Similarity=0.112 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhc
Q 009512 157 MPTPVQMQAIPSALSGKS-LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~-vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
.+++-|.+++..++++++ +++.+..|+|||++ +-.+...+. ..+.+++.++||-.-+..+.+
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e---------~~G~~V~~~ApTGkAA~~L~e------- 408 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWE---------AAGYEVRGAALSGIAAENLEG------- 408 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHH---------HcCCeEEEecCcHHHHHHHhh-------
Confidence 689999999999998654 68899999999985 333333332 246779999999766543321
Q ss_pred CCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC--C
Q 009512 236 GLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--S 313 (533)
Q Consensus 236 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~--~ 313 (533)
..++.. .|..+|+.-...+...+...++|||||+-++... ++..++... .
T Consensus 409 ~tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~~ 460 (988)
T PRK13889 409 GSGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAADA 460 (988)
T ss_pred ccCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCHH----HHHHHHHhhhhC
Confidence 112210 1222332212223334667789999999976543 334444432 3
Q ss_pred CCcEEEeccc
Q 009512 314 LPQILMYSAT 323 (533)
Q Consensus 314 ~~q~i~~SAT 323 (533)
..++|++.=+
T Consensus 461 garvVLVGD~ 470 (988)
T PRK13889 461 GAKVVLVGDP 470 (988)
T ss_pred CCEEEEECCH
Confidence 5677776533
No 198
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.26 E-value=0.00044 Score=65.96 Aligned_cols=52 Identities=25% Similarity=0.381 Sum_probs=39.1
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHh
Q 009512 129 AVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCAN 199 (533)
Q Consensus 129 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~ 199 (533)
.+|..+.+|+++++|+.+.+.+.. ...=+||.+|||||||+. +..++.++-.
T Consensus 100 ~Ip~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 100 LIPSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred ccCccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 568899999999999887763321 112389999999999986 6677777754
No 199
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.26 E-value=0.045 Score=67.17 Aligned_cols=237 Identities=10% Similarity=0.126 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 157 MPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g--~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.+++-|.+++..++.. +-.+|.++.|+|||.+ +-.+... .. ..+..++.++||-.-+..+.+......
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~-~~--------~~G~~V~~lAPTgrAA~~L~e~~g~~A 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHL-AS--------EQGYEIQIITAGSLSAQELRQKIPRLA 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHH-HH--------hcCCeEEEEeCCHHHHHHHHHHhcchh
Confidence 5789999999999865 4578899999999985 3333333 32 346789999999876665544321110
Q ss_pred cCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC--
Q 009512 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-- 312 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-- 312 (533)
.........+..+ .-..|...|+ .....+..-++||||||-++.. .++..++...
T Consensus 499 -------------~Ti~~~l~~l~~~--~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~----~~~~~Ll~~a~~ 555 (1960)
T TIGR02760 499 -------------STFITWVKNLFND--DQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN----NELLKLIDKAEQ 555 (1960)
T ss_pred -------------hhHHHHHHhhccc--ccchhHHHhh----cccCCCCCCCEEEEECCCCCCH----HHHHHHHHHHhh
Confidence 0111111111111 1122333333 2223456678999999997643 3444555433
Q ss_pred CCCcEEEeccc--C-----cHHHHHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhccCCCCCEE
Q 009512 313 SLPQILMYSAT--I-----SQEVEKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSKQHFTPPAV 385 (533)
Q Consensus 313 ~~~q~i~~SAT--~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l 385 (533)
...++|++.=+ + ...+..+.. .....+.+...... ...+ .+...+...+...+.+...........++
T Consensus 556 ~garvVlvGD~~QL~sV~aG~~f~~L~~-~gv~t~~l~~i~rq--~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tl 630 (1960)
T TIGR02760 556 HNSKLILLNDSAQRQGMSAGSAIDLLKE-GGVTTYAWVDTKQQ--KASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQ 630 (1960)
T ss_pred cCCEEEEEcChhhcCccccchHHHHHHH-CCCcEEEeeccccc--Ccce--eeeccCchHHHHHHHHHHHhcccccCceE
Confidence 46788877543 1 123333322 22222222211111 1111 11112222333445544444333444699
Q ss_pred EEEcCcccHHHHHHHHHhhc---C------CeEEEEc-CCCCHHHHHHHHHHHhcCC
Q 009512 386 VYVGSRLGADLLSNAISVTT---G------MKALSIH-GEKPMKERREIMRSFLVGE 432 (533)
Q Consensus 386 IF~~s~~~~~~l~~~l~~~~---~------~~~~~ih-~~~~~~~r~~~~~~f~~g~ 432 (533)
|+..+......|...++... | .....+. .+++..++... ..|+.|.
T Consensus 631 iv~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 631 VLATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred EEcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 99999999888888886332 2 2223332 35677776643 6666554
No 200
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.24 E-value=0.002 Score=55.99 Aligned_cols=78 Identities=19% Similarity=0.368 Sum_probs=56.0
Q ss_pred EEcCCCCHHHHHHHHHHHhcCC-CcEEEEeccccccCCCCC--ccEEEEcCCCCC-------------------------
Q 009512 411 SIHGEKPMKERREIMRSFLVGE-VPVIVATGILGRGVELLG--VRQVIIFDMPNS------------------------- 462 (533)
Q Consensus 411 ~ih~~~~~~~r~~~~~~f~~g~-~~VLvaT~~~~~Gldi~~--v~~VI~~~~p~s------------------------- 462 (533)
.+..+....+...+++.|+... ..||++|..+++|+|+|+ ++.||...+|..
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 3445556657788999998754 379999988999999997 578888776521
Q ss_pred ------HhHHHHhhcccCCCCCccEEEEEecC
Q 009512 463 ------IKEYVHQIGRASQMGDEGTAIVFVNE 488 (533)
Q Consensus 463 ------~~~y~qriGR~gR~g~~g~~~~l~~~ 488 (533)
.....|.+||+-|...+--+++++++
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D~ 137 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGANDYGVVVIADK 137 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcCceEEEEEEec
Confidence 23346888999998665445555554
No 201
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.23 E-value=0.0055 Score=52.96 Aligned_cols=17 Identities=41% Similarity=0.569 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHH
Q 009512 172 GKSLLVSANTGSGKTAS 188 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~ 188 (533)
++.+++.|++|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999974
No 202
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.0079 Score=61.31 Aligned_cols=129 Identities=14% Similarity=0.138 Sum_probs=68.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEE-ccc-HHHHHHHHHHHHHHhcCCCCeEEEEEcCCch
Q 009512 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVL-TPT-RELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil-~Pt-r~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
+.+++.||||+|||++..-.+...... ....+.++.++ +-+ |.-+. ++++.++..+++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~------~~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGIN------SDDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKA------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhh------hccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEe-------
Confidence 468889999999998754333222111 00123334443 333 33333 2355555544543321
Q ss_pred HHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcc-hHHHHHHHHHhCC-C-CcEEEecccCc-H
Q 009512 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-FRDQVMQIFRAIS-L-PQILMYSATIS-Q 326 (533)
Q Consensus 251 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~-~~~~i~~i~~~~~-~-~q~i~~SAT~~-~ 326 (533)
+-++..+...+.. +.++++|++|++.++.... ....+..++.... + ..++.+|||.. .
T Consensus 239 --------------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 239 --------------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred --------------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 1134444443432 3567899999999875321 1234445555443 2 46688899985 4
Q ss_pred HHHHHHHhh
Q 009512 327 EVEKMSSSI 335 (533)
Q Consensus 327 ~~~~~~~~~ 335 (533)
.+.+....+
T Consensus 301 ~~~~~~~~~ 309 (388)
T PRK12723 301 DVKEIFHQF 309 (388)
T ss_pred HHHHHHHHh
Confidence 444444444
No 203
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.21 E-value=0.0012 Score=56.44 Aligned_cols=19 Identities=37% Similarity=0.513 Sum_probs=12.9
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009512 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~l 190 (533)
++.+++.|++|+|||....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4568999999999998543
No 204
>PRK04296 thymidine kinase; Provisional
Probab=97.14 E-value=0.0018 Score=59.51 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=24.5
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcc
Q 009512 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
|.-.++.+++|+|||+.++-.+. ++. ..+.+++|+-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~-~~~---------~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAY-NYE---------ERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHH-HHH---------HcCCeEEEEec
Confidence 34468899999999986543333 332 23567888866
No 205
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.12 E-value=0.0021 Score=55.87 Aligned_cols=73 Identities=21% Similarity=0.409 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHhcCCC---cEEEEecc--ccccCCCCC--ccEEEEcCCCCC--------------------------
Q 009512 416 KPMKERREIMRSFLVGEV---PVIVATGI--LGRGVELLG--VRQVIIFDMPNS-------------------------- 462 (533)
Q Consensus 416 ~~~~~r~~~~~~f~~g~~---~VLvaT~~--~~~Gldi~~--v~~VI~~~~p~s-------------------------- 462 (533)
....+...+++.|++..- .||+++.- +++|||+|+ ++.||...+|..
T Consensus 28 ~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~ 107 (142)
T smart00491 28 KDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEV 107 (142)
T ss_pred CCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 333455788888987543 68988876 999999997 578888776631
Q ss_pred -----HhHHHHhhcccCCCCCccEEEEEecC
Q 009512 463 -----IKEYVHQIGRASQMGDEGTAIVFVNE 488 (533)
Q Consensus 463 -----~~~y~qriGR~gR~g~~g~~~~l~~~ 488 (533)
+....|.+||+-|...+--+++++++
T Consensus 108 ~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 108 YLFDAMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHHHHHhCccccCccceEEEEEEec
Confidence 12346889999998766446666654
No 206
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.08 E-value=0.0025 Score=61.35 Aligned_cols=85 Identities=21% Similarity=0.307 Sum_probs=66.9
Q ss_pred HHHHHHhcCCCcEEEEeccccccCCCCC--------ccEEEEcCCCCCHhHHHHhhcccCCCCCc-cEEEEEecC---cC
Q 009512 423 EIMRSFLVGEVPVIVATGILGRGVELLG--------VRQVIIFDMPNSIKEYVHQIGRASQMGDE-GTAIVFVNE---EN 490 (533)
Q Consensus 423 ~~~~~f~~g~~~VLvaT~~~~~Gldi~~--------v~~VI~~~~p~s~~~y~qriGR~gR~g~~-g~~~~l~~~---~~ 490 (533)
...+.|.+|+..|+|.++.++.|+.+.. -++-|.+.+|||.+..+|.+||+.|.|+. .-.|.++.. .+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5667899999999999999999998763 35677789999999999999999999874 333444432 37
Q ss_pred HHHHHHHHHHHHhcCCC
Q 009512 491 KNLFQELVDILKSSGAG 507 (533)
Q Consensus 491 ~~~~~~l~~~l~~~~~~ 507 (533)
++++.-+.+.|+..+..
T Consensus 132 ~Rfas~va~rL~sLgAl 148 (278)
T PF13871_consen 132 RRFASTVARRLESLGAL 148 (278)
T ss_pred HHHHHHHHHHHhhcccc
Confidence 77788888888775443
No 207
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.08 E-value=0.0015 Score=61.93 Aligned_cols=87 Identities=23% Similarity=0.331 Sum_probs=66.9
Q ss_pred CCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCC-chHHHHHHHHc-CCceeecChHHHHHHHHcCCCCCCCe
Q 009512 208 QKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGD-AMARQVYRIQQ-GVELIVGTPGRLIDLLMKHDIELDDI 285 (533)
Q Consensus 208 ~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~l~~-~~~Iiv~Tp~~l~~~l~~~~~~l~~i 285 (533)
...|.+|||+..-.-|..+...++.|... +..++-++.-. ...++..-+.. .++|.||||+|+..++..+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 56788999999877777777777777421 23444455543 55666666664 58999999999999999999999999
Q ss_pred eEEEEeccch
Q 009512 286 RMFVLDEVDC 295 (533)
Q Consensus 286 ~~vVvDEah~ 295 (533)
.+||+|--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998764
No 208
>PHA02533 17 large terminase protein; Provisional
Probab=97.08 E-value=0.0032 Score=66.97 Aligned_cols=149 Identities=12% Similarity=0.109 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009512 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.|.|+|...+..+..++-.++..+=..|||.+....++..+.. ..+..+++++|+..-|..+.+.++.+...
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~--------~~~~~v~i~A~~~~QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCF--------NKDKNVGILAHKASMAAEVLDRTKQAIEL 130 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHh--------CCCCEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 5789999999887667777888899999998776555444432 23568999999999999888888766544
Q ss_pred CCC--eEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc-chHHHHHHHHHhCC
Q 009512 237 LPF--KTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAIS 313 (533)
Q Consensus 237 ~~~--~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~-~~~~~i~~i~~~~~ 313 (533)
.+. +....... .....+.+|..|.+.|-+ .....=.+..++|+||+|.+.+. .....+...+..-.
T Consensus 131 ~P~l~~~~i~~~~----~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~~~e~~~ai~p~lasg~ 199 (534)
T PHA02533 131 LPDFLQPGIVEWN----KGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPNFIDFWLAIQPVISSGR 199 (534)
T ss_pred CHHHhhcceeecC----ccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCCHHHHHHHHHHHHHcCC
Confidence 331 10000000 000112345556444411 11111224568999999976432 11122333333323
Q ss_pred CCcEEEecccC
Q 009512 314 LPQILMYSATI 324 (533)
Q Consensus 314 ~~q~i~~SAT~ 324 (533)
..+++.+|++.
T Consensus 200 ~~r~iiiSTp~ 210 (534)
T PHA02533 200 SSKIIITSTPN 210 (534)
T ss_pred CceEEEEECCC
Confidence 34565555543
No 209
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.01 E-value=0.0056 Score=66.90 Aligned_cols=146 Identities=16% Similarity=0.115 Sum_probs=85.0
Q ss_pred CCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCc-EEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCC
Q 009512 131 PAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKS-LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQK 209 (533)
Q Consensus 131 p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~-vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~ 209 (533)
|+.+..-.+..+.+.+... -+..++.-|++|+-.++.-+| .||.|=+|+|||...... +..+. ..
T Consensus 647 pP~f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~L-IkiL~---------~~ 712 (1100)
T KOG1805|consen 647 PPKFVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLL-IKILV---------AL 712 (1100)
T ss_pred CchhhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHH-HHHHH---------Hc
Confidence 3333333344455555442 234677899999999886665 788999999999854332 23222 34
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHH-----------------HHHHcCCceeecChHHHH
Q 009512 210 NPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQV-----------------YRIQQGVELIVGTPGRLI 272 (533)
Q Consensus 210 ~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~-----------------~~l~~~~~Iiv~Tp~~l~ 272 (533)
|+++|+.+=|..-+..+.-.++.+. +...-+-.+....++. ....+...||.+|---+-
T Consensus 713 gkkVLLtsyThsAVDNILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~ 788 (1100)
T KOG1805|consen 713 GKKVLLTSYTHSAVDNILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN 788 (1100)
T ss_pred CCeEEEEehhhHHHHHHHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC
Confidence 7779999988777666655555442 2221111222222222 222344667777743222
Q ss_pred HHHHcCCCCCCCeeEEEEeccchhhh
Q 009512 273 DLLMKHDIELDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 273 ~~l~~~~~~l~~i~~vVvDEah~~~~ 298 (533)
+.+ +..+.|+++|+|||-.+..
T Consensus 789 ~pl----f~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 789 HPL----FVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred chh----hhccccCEEEEcccccccc
Confidence 222 2345699999999998764
No 210
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.011 Score=59.66 Aligned_cols=131 Identities=22% Similarity=0.250 Sum_probs=63.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCch
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|..+++.+|||+|||+.....+...+.. ....++.+++ +...-.--.++++.+++.+++.+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~--------~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~------- 199 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR--------FGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHA------- 199 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh--------cCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEe-------
Confidence 35678999999999998654433332221 1112344433 2222111223444444444443322
Q ss_pred HHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcc-hHHHHHHHHHhC-CCCcEEEecccCcHH-
Q 009512 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-FRDQVMQIFRAI-SLPQILMYSATISQE- 327 (533)
Q Consensus 251 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~-~~~~i~~i~~~~-~~~q~i~~SAT~~~~- 327 (533)
+.+++.+...+. .+.+.++|+||.+-+..... ...++..+.... +...++.+|||...+
T Consensus 200 --------------~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 200 --------------VKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred --------------cCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 223333333332 23456789999997643211 223333332211 234578889998543
Q ss_pred HHHHHHhh
Q 009512 328 VEKMSSSI 335 (533)
Q Consensus 328 ~~~~~~~~ 335 (533)
+.+....|
T Consensus 262 l~evi~~f 269 (374)
T PRK14722 262 LNEVVQAY 269 (374)
T ss_pred HHHHHHHH
Confidence 34444444
No 211
>PRK14974 cell division protein FtsY; Provisional
Probab=96.94 E-value=0.011 Score=59.01 Aligned_cols=131 Identities=16% Similarity=0.157 Sum_probs=69.7
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEccc---HHHHHHHHHHHHHHhcCCCCeEEEEEcCCc
Q 009512 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT---RELCIQVEEQAKLLGKGLPFKTALVVGGDA 249 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt---r~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~ 249 (533)
.-+++.+++|+|||+...-.+ +.+. ..+.+++++... .....|+..+...+ ++.+.....|..
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA--~~l~--------~~g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~d 206 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA--YYLK--------KNGFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGAD 206 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH--HHHH--------HcCCeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCCC
Confidence 347789999999998543322 2222 123456555432 33445555544443 443332222211
Q ss_pred hHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhh-cchHHHHHHHHHhC-CCCcEEEecccCcHH
Q 009512 250 MARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQE 327 (533)
Q Consensus 250 ~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~-~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~ 327 (533)
... + +.+.+... ....+++|++|.+.++.. ......+..+.+.. +...++.++||...+
T Consensus 207 p~~----------v-------~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d 267 (336)
T PRK14974 207 PAA----------V-------AYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND 267 (336)
T ss_pred HHH----------H-------HHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh
Confidence 111 0 11111110 113457999999998752 33456666666554 455677789988776
Q ss_pred HHHHHHhhc
Q 009512 328 VEKMSSSIS 336 (533)
Q Consensus 328 ~~~~~~~~~ 336 (533)
....+..+.
T Consensus 268 ~~~~a~~f~ 276 (336)
T PRK14974 268 AVEQAREFN 276 (336)
T ss_pred HHHHHHHHH
Confidence 665555553
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.94 E-value=0.0039 Score=53.37 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=15.5
Q ss_pred CCcEEEEccCCCchhHHH
Q 009512 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
+..+++.||+|+|||+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 567899999999999854
No 213
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.93 E-value=0.013 Score=59.94 Aligned_cols=74 Identities=22% Similarity=0.193 Sum_probs=47.5
Q ss_pred CCCCCCHHHHHHHHHH----hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHH
Q 009512 154 GYDMPTPVQMQAIPSA----LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQ 229 (533)
Q Consensus 154 g~~~p~~~Q~~~i~~i----~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~ 229 (533)
.|..-+|-|-+-.-.+ -.+.+.++.+|+|+|||.+.+..++..-+..+ ....+.+|..-|..-++....+
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p------~~~~KliYCSRTvpEieK~l~E 86 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP------DEHRKLIYCSRTVPEIEKALEE 86 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC------cccceEEEecCcchHHHHHHHH
Confidence 4666778787655443 36778999999999999987666666555432 2334566666665554544455
Q ss_pred HHHH
Q 009512 230 AKLL 233 (533)
Q Consensus 230 ~~~~ 233 (533)
++.+
T Consensus 87 l~~l 90 (755)
T KOG1131|consen 87 LKRL 90 (755)
T ss_pred HHHH
Confidence 5544
No 214
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.89 E-value=0.02 Score=65.37 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=74.6
Q ss_pred CCCCHHHHHHHHHHhC-CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 156 DMPTPVQMQAIPSALS-GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~-g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
..+++-|.+++..+.. ++-+++.|+.|+|||++ +-++...+. ..+.+++.++||-.-+..+.+
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e---------~~G~~V~g~ApTgkAA~~L~e------ 443 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWE---------AAGYRVVGGALAGKAAEGLEK------ 443 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHH---------HcCCeEEEEcCcHHHHHHHHH------
Confidence 4689999999998864 45678999999999985 334444333 246779999999666554322
Q ss_pred cCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC--
Q 009512 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-- 312 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-- 312 (533)
..++.. .|..+|+.........+..-++|||||+.++.. .++..+++..
T Consensus 444 -~~Gi~a------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~----~~m~~Ll~~~~~ 494 (1102)
T PRK13826 444 -EAGIQS------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS----RQMALFVEAVTR 494 (1102)
T ss_pred -hhCCCe------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCCH----HHHHHHHHHHHh
Confidence 122221 122222111112223466678999999997643 3344445444
Q ss_pred CCCcEEEeccc
Q 009512 313 SLPQILMYSAT 323 (533)
Q Consensus 313 ~~~q~i~~SAT 323 (533)
...++|++.=+
T Consensus 495 ~garvVLVGD~ 505 (1102)
T PRK13826 495 AGAKLVLVGDP 505 (1102)
T ss_pred cCCEEEEECCH
Confidence 35677776543
No 215
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.88 E-value=0.0021 Score=65.50 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHH------hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009512 158 PTPVQMQAIPSA------LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 158 p~~~Q~~~i~~i------~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
+++-|++++..+ ..+.++++.|+-|+|||. ++-.+..... ..+..+++++||-.-|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~--------~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLR--------SRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhc--------cccceEEEecchHHHHHhc
Confidence 567899998888 578899999999999997 3434433332 3467799999997666544
No 216
>PRK06526 transposase; Provisional
Probab=96.77 E-value=0.0082 Score=57.74 Aligned_cols=46 Identities=11% Similarity=0.133 Sum_probs=27.2
Q ss_pred CCeeEEEEeccchhhhcc-hHHHHHHHHHh-CCCCcEEEecccCcHHH
Q 009512 283 DDIRMFVLDEVDCMLQRG-FRDQVMQIFRA-ISLPQILMYSATISQEV 328 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~-~~~~i~~i~~~-~~~~q~i~~SAT~~~~~ 328 (533)
..+++||+||+|...... -...+..++.. .....+|+.|...+...
T Consensus 158 ~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w 205 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRW 205 (254)
T ss_pred ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHH
Confidence 456799999999764221 12334454433 23456777777766543
No 217
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.77 E-value=0.0044 Score=65.65 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=87.6
Q ss_pred HHHHHHHHHHh-----CC----CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009512 160 PVQMQAIPSAL-----SG----KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 160 ~~Q~~~i~~i~-----~g----~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
|||.-++-.++ .| +.+++.-+-|-|||......++..+.- ....+..+++++++++-|..+++.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~------~g~~~~~i~~~A~~~~QA~~~f~~~ 74 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFL------DGEPGAEIYCAANTRDQAKIVFDEA 74 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhc------CCccCceEEEEeCCHHHHHHHHHHH
Confidence 67888877776 22 347888899999998655444444432 1235678999999999999999999
Q ss_pred HHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcC--CCCCCCeeEEEEeccchhhhcchHHHHHHH
Q 009512 231 KLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKH--DIELDDIRMFVLDEVDCMLQRGFRDQVMQI 308 (533)
Q Consensus 231 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~--~~~l~~i~~vVvDEah~~~~~~~~~~i~~i 308 (533)
+.+....+...... . ...... ....|.....+.++..+.+. ...-.+..++|+||+|.+.+......+..-
T Consensus 75 ~~~i~~~~~l~~~~-~-----~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g 147 (477)
T PF03354_consen 75 KKMIEASPELRKRK-K-----PKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESG 147 (477)
T ss_pred HHHHHhChhhccch-h-----hhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhh
Confidence 88876533211000 0 000000 01223322222222222222 222335689999999998765445555555
Q ss_pred HHhCCCCcEEEecc
Q 009512 309 FRAISLPQILMYSA 322 (533)
Q Consensus 309 ~~~~~~~q~i~~SA 322 (533)
....++++++.+|.
T Consensus 148 ~~~r~~pl~~~IST 161 (477)
T PF03354_consen 148 MGARPNPLIIIIST 161 (477)
T ss_pred hccCCCceEEEEeC
Confidence 55556777777653
No 218
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.77 E-value=0.0083 Score=58.98 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=83.8
Q ss_pred cCCCCCCHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH----
Q 009512 153 AGYDMPTPVQMQAIPSALSGK--SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV---- 226 (533)
Q Consensus 153 ~g~~~p~~~Q~~~i~~i~~g~--~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~---- 226 (533)
.|...-+..|.-|+..++... =+.+.++.|||||+.++.+.+......+ ...+++|.=|+..+.+.+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-------~y~KiiVtRp~vpvG~dIGfLP 296 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK-------RYRKIIVTRPTVPVGEDIGFLP 296 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh-------hhceEEEecCCcCcccccCcCC
Confidence 477777888999999988654 3677999999999998888888777643 345577777876654321
Q ss_pred -------HHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCC--------C--eeEEE
Q 009512 227 -------EEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELD--------D--IRMFV 289 (533)
Q Consensus 227 -------~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~--------~--i~~vV 289 (533)
.-|+..+. +.+..+.+.. =++.+.+..++.+..+.+. + =.|||
T Consensus 297 G~eEeKm~PWmq~i~-----------------DnLE~L~~~~---~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiI 356 (436)
T COG1875 297 GTEEEKMGPWMQAIF-----------------DNLEVLFSPN---EPGDRALEEILSRGRIEVEALTYIRGRSLPDSFII 356 (436)
T ss_pred CchhhhccchHHHHH-----------------hHHHHHhccc---ccchHHHHHHHhccceeeeeeeeecccccccceEE
Confidence 11111111 1111111110 1123344444444332211 1 25899
Q ss_pred EeccchhhhcchHHHHHHHHHhC-CCCcEEEec
Q 009512 290 LDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYS 321 (533)
Q Consensus 290 vDEah~~~~~~~~~~i~~i~~~~-~~~q~i~~S 321 (533)
+|||+.+ ...++..|+++. +..++|++.
T Consensus 357 IDEaQNL----TpheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 357 IDEAQNL----TPHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred Eehhhcc----CHHHHHHHHHhccCCCEEEEcC
Confidence 9999986 367888999988 556666643
No 219
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.75 E-value=0.0056 Score=68.69 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=97.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhh--------cccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEE
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRL--------HHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTA 242 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~--------~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~ 242 (533)
.|+++++.-..|+|||..-+...+...-.... ........+..|||+|. ++..||.+++.+..... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 35678899999999998765544433211000 00011123568999998 55599999999987764 5666
Q ss_pred EEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCC--------------CC----CCC--eeEEEEeccchhhhcchH
Q 009512 243 LVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHD--------------IE----LDD--IRMFVLDEVDCMLQRGFR 302 (533)
Q Consensus 243 ~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~--------------~~----l~~--i~~vVvDEah~~~~~~~~ 302 (533)
...|-.........-.-.++||++|+..|..-+.... .. |-. +=-|++|||+.+-. ..
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hH
Confidence 6555211111000112349999999999966654321 01 111 12389999996643 46
Q ss_pred HHHHHHHHhCCCCcEEEecccCcHHHHH
Q 009512 303 DQVMQIFRAISLPQILMYSATISQEVEK 330 (533)
Q Consensus 303 ~~i~~i~~~~~~~q~i~~SAT~~~~~~~ 330 (533)
....+...+++....-++|+|+-..+..
T Consensus 529 S~~a~M~~rL~~in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 529 SAAAEMVRRLHAINRWCVTGTPIQKIDD 556 (1394)
T ss_pred HHHHHHHHHhhhhceeeecCCchhhhhh
Confidence 7777888888888899999997544433
No 220
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.74 E-value=0.039 Score=52.67 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=29.5
Q ss_pred CCCeeEEEEeccchhhhcchHH-HHHHHHHhC--CCCcEEEecccCcHHHH
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRD-QVMQIFRAI--SLPQILMYSATISQEVE 329 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~-~i~~i~~~~--~~~q~i~~SAT~~~~~~ 329 (533)
+..+++|||||++......+.. .+..|+..- ....+++.|---+.++.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 3467899999999876444443 344455443 34667777765555443
No 221
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.036 Score=56.07 Aligned_cols=128 Identities=15% Similarity=0.190 Sum_probs=67.4
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEE-EEc-ccH-HHHHHHHHHHHHHhcCCCCeEEEEEcCCc
Q 009512 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAM-VLT-PTR-ELCIQVEEQAKLLGKGLPFKTALVVGGDA 249 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~L-il~-Ptr-~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~ 249 (533)
+.+++.||||+|||+.....+. .+. ..+.++. +-+ |.| ..+.|+..+.. ..++.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~---------~~GkkVglI~aDt~RiaAvEQLk~yae----~lgipv~------- 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFH---------GKKKTVGFITTDHSRIGTVQQLQDYVK----TIGFEVI------- 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHH---------HcCCcEEEEecCCcchHHHHHHHHHhh----hcCCcEE-------
Confidence 5678999999999986544333 222 1233444 444 333 23344443332 2232221
Q ss_pred hHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcc-hHHHHHHHHHhC-CCCcEEEecccC-cH
Q 009512 250 MARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG-FRDQVMQIFRAI-SLPQILMYSATI-SQ 326 (533)
Q Consensus 250 ~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~-~~~~i~~i~~~~-~~~q~i~~SAT~-~~ 326 (533)
+..+|..+.+.+..... -.++++|++|-+-+..... ....+..++... +..-++.+|||. .+
T Consensus 301 --------------v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~ 365 (436)
T PRK11889 301 --------------AVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 365 (436)
T ss_pred --------------ecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH
Confidence 13356666555543210 1247899999988754321 223344444443 333456688875 45
Q ss_pred HHHHHHHhhc
Q 009512 327 EVEKMSSSIS 336 (533)
Q Consensus 327 ~~~~~~~~~~ 336 (533)
+...++..|.
T Consensus 366 d~~~i~~~F~ 375 (436)
T PRK11889 366 DMIEIITNFK 375 (436)
T ss_pred HHHHHHHHhc
Confidence 6667776664
No 222
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.68 E-value=0.00013 Score=78.00 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhc---CCCcEEEEecc
Q 009512 365 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLV---GEVPVIVATGI 441 (533)
Q Consensus 365 ~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~---g~~~VLvaT~~ 441 (533)
.|+..|...+......+++++||..-....+.|..++. ..+ ....+.|.....+|+..+..|.. ...-.|.+|..
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~-~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra 692 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLT-YEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRA 692 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHh-ccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccc
Confidence 34555666666667778899999999999999999998 555 77789999999999999999995 25567889987
Q ss_pred cccc
Q 009512 442 LGRG 445 (533)
Q Consensus 442 ~~~G 445 (533)
.+.|
T Consensus 693 ~g~g 696 (696)
T KOG0383|consen 693 GGLG 696 (696)
T ss_pred ccCC
Confidence 6544
No 223
>PRK08181 transposase; Validated
Probab=96.67 E-value=0.033 Score=53.93 Aligned_cols=119 Identities=17% Similarity=0.176 Sum_probs=62.6
Q ss_pred CHHHHHHHH----HHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 159 TPVQMQAIP----SALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 159 ~~~Q~~~i~----~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.+.|..++. .+..++++++.||+|+|||..+. .+...+.. .+..++|+ +..+|..++....
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~---------~g~~v~f~-~~~~L~~~l~~a~---- 153 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAA-AIGLALIE---------NGWRVLFT-RTTDLVQKLQVAR---- 153 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHH-HHHHHHHH---------cCCceeee-eHHHHHHHHHHHH----
Confidence 445555542 33477899999999999997433 22222222 24445554 4456655443211
Q ss_pred cCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcch-HHHHHHHHHhC-
Q 009512 235 KGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF-RDQVMQIFRAI- 312 (533)
Q Consensus 235 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~-~~~i~~i~~~~- 312 (533)
.. .+...++.. +...++||+||++......+ ...+..++...
T Consensus 154 ~~-----------------------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~ 197 (269)
T PRK08181 154 RE-----------------------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARY 197 (269)
T ss_pred hC-----------------------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHH
Confidence 00 011122222 33567899999997643322 23445555443
Q ss_pred CCCcEEEecccCcHHH
Q 009512 313 SLPQILMYSATISQEV 328 (533)
Q Consensus 313 ~~~q~i~~SAT~~~~~ 328 (533)
....+|+.|...+.+.
T Consensus 198 ~~~s~IiTSN~~~~~w 213 (269)
T PRK08181 198 ERRSILITANQPFGEW 213 (269)
T ss_pred hCCCEEEEcCCCHHHH
Confidence 3345666666555443
No 224
>PRK08727 hypothetical protein; Validated
Probab=96.53 E-value=0.023 Score=54.05 Aligned_cols=46 Identities=7% Similarity=0.129 Sum_probs=26.5
Q ss_pred CCeeEEEEeccchhhhcc-hHHHHHHHHHhC--CCCcEEEecccCcHHH
Q 009512 283 DDIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEV 328 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~-~~~~i~~i~~~~--~~~q~i~~SAT~~~~~ 328 (533)
.+.++||+||+|.+.... ....+..++... ...++|+.|...|...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 345689999999876432 233444454443 2345666565555544
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.51 E-value=0.047 Score=54.58 Aligned_cols=47 Identities=9% Similarity=0.277 Sum_probs=28.1
Q ss_pred CCCeeEEEEeccchhhhcch-HHHHHHHHHhC--CCCcEEEecccCcHHH
Q 009512 282 LDDIRMFVLDEVDCMLQRGF-RDQVMQIFRAI--SLPQILMYSATISQEV 328 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~-~~~i~~i~~~~--~~~q~i~~SAT~~~~~ 328 (533)
+.++++||+|+++......+ ...+..++... ....+|+.|.-.+.++
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 34578999999987643332 34555555544 3456666666555554
No 226
>PRK06893 DNA replication initiation factor; Validated
Probab=96.37 E-value=0.012 Score=55.89 Aligned_cols=43 Identities=19% Similarity=0.393 Sum_probs=27.0
Q ss_pred CCeeEEEEeccchhhh-cchHHHHHHHHHhC--CCCcEEEecccCc
Q 009512 283 DDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI--SLPQILMYSATIS 325 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~-~~~~~~i~~i~~~~--~~~q~i~~SAT~~ 325 (533)
.+.++||+||+|.+.. ..+...+..++... ...+++++|++.+
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 4567999999998753 22344555555554 2345667777654
No 227
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.28 E-value=0.038 Score=60.82 Aligned_cols=71 Identities=24% Similarity=0.239 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
..+++-|.+++-. ...+++|.|..|||||.+. +..+.+++.. ......++|+++.|+..|..+.+.+....
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl-~~r~ayLl~~-----~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVL-VARAGWLLAR-----GQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHH-HHHHHHHHHh-----CCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4689999998853 3457899999999999874 3444444431 11234579999999999998888776554
No 228
>PRK12377 putative replication protein; Provisional
Probab=96.27 E-value=0.14 Score=49.05 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=26.3
Q ss_pred CCCeeEEEEeccchhhhcch-HHHHHHHHHhC--CCCcEEEecccCcHHH
Q 009512 282 LDDIRMFVLDEVDCMLQRGF-RDQVMQIFRAI--SLPQILMYSATISQEV 328 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~-~~~i~~i~~~~--~~~q~i~~SAT~~~~~ 328 (533)
+.++++||+||++......+ ...+..++... ....++..|---+.++
T Consensus 161 l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l 210 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAM 210 (248)
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHH
Confidence 45678999999965432222 23444555443 2356666665444433
No 229
>PRK06921 hypothetical protein; Provisional
Probab=96.23 E-value=0.052 Score=52.65 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=26.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHH
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 225 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q 225 (533)
.+.++++.|++|+|||..+ ..+...+.. ..+..++++.. .++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~--------~~g~~v~y~~~-~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMR--------KKGVPVLYFPF-VEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhh--------hcCceEEEEEH-HHHHHH
Confidence 3577999999999999742 333333332 11455666554 344443
No 230
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.22 E-value=0.067 Score=56.33 Aligned_cols=47 Identities=15% Similarity=0.380 Sum_probs=27.5
Q ss_pred CeeEEEEeccchhhhcc-hHHHHHHHHHhC--CCCcEEEecccCcHHHHH
Q 009512 284 DIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEVEK 330 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~~-~~~~i~~i~~~~--~~~q~i~~SAT~~~~~~~ 330 (533)
.+++||+||+|.+.... ....+..++..+ ...++++.|...|..+..
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~ 260 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPG 260 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 46689999999875432 233444554444 344566655555555443
No 231
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.22 E-value=0.029 Score=58.80 Aligned_cols=46 Identities=13% Similarity=0.241 Sum_probs=28.2
Q ss_pred CCeeEEEEeccchhhhc-chHHHHHHHHHhC--CCCcEEEecccCcHHH
Q 009512 283 DDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SLPQILMYSATISQEV 328 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~-~~~~~i~~i~~~~--~~~q~i~~SAT~~~~~ 328 (533)
.+.++||+||+|.+... .....+..++..+ ...++|+.|-..|...
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 35678999999987532 2334455555554 3446666666666544
No 232
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.21 E-value=0.1 Score=54.21 Aligned_cols=128 Identities=18% Similarity=0.230 Sum_probs=66.4
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEc-c-cHH-HHHHHHHHHHHHhcCCCCeEEEEEcCC
Q 009512 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT-P-TRE-LCIQVEEQAKLLGKGLPFKTALVVGGD 248 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~-P-tr~-L~~Q~~~~~~~~~~~~~~~~~~~~gg~ 248 (533)
++.+++.+|||+|||+.....+...... ..+.++.++. - .|. ...|+..+.+. .++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~--------~~g~~V~li~~D~~r~~a~eqL~~~a~~----~~vp~~------ 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL--------YGKKKVALITLDTYRIGAVEQLKTYAKI----MGIPVE------ 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh--------cCCCeEEEEECCccHHHHHHHHHHHHHH----hCCceE------
Confidence 5568889999999998655433332211 1233444443 3 332 22333333322 232221
Q ss_pred chHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc-chHHHHHHHHHhC--CCCcEEEecccCc
Q 009512 249 AMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SLPQILMYSATIS 325 (533)
Q Consensus 249 ~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~-~~~~~i~~i~~~~--~~~q~i~~SAT~~ 325 (533)
.+.++..+...+.. +.++++||||.+-+.... .....+..++... +....+.+|||..
T Consensus 283 ---------------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 283 ---------------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK 343 (424)
T ss_pred ---------------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC
Confidence 12344444444442 335789999998764321 1234455555521 3345778899875
Q ss_pred -HHHHHHHHhhc
Q 009512 326 -QEVEKMSSSIS 336 (533)
Q Consensus 326 -~~~~~~~~~~~ 336 (533)
..+..+...+.
T Consensus 344 ~~~l~~~~~~f~ 355 (424)
T PRK05703 344 YEDLKDIYKHFS 355 (424)
T ss_pred HHHHHHHHHHhC
Confidence 45566555553
No 233
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.19 E-value=0.041 Score=48.60 Aligned_cols=38 Identities=32% Similarity=0.287 Sum_probs=23.6
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH
Q 009512 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 175 vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
+++.|++|+|||..+... +..+. ..+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i-~~~~~---------~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL-ALNIA---------TKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHH-HHHHH---------hcCCEEEEEECCcch
Confidence 688999999999854332 22222 135567777665444
No 234
>PRK05642 DNA replication initiation factor; Validated
Probab=96.16 E-value=0.037 Score=52.71 Aligned_cols=42 Identities=17% Similarity=0.438 Sum_probs=25.6
Q ss_pred CeeEEEEeccchhhhc-chHHHHHHHHHhCC-CCcEEEecccCc
Q 009512 284 DIRMFVLDEVDCMLQR-GFRDQVMQIFRAIS-LPQILMYSATIS 325 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~-~~~~~i~~i~~~~~-~~q~i~~SAT~~ 325 (533)
+++++|+|++|.+... .+...+..++..+. ....++++++.+
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~ 140 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKS 140 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCC
Confidence 4568999999977432 34555667766552 234455555543
No 235
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.12 E-value=0.028 Score=52.87 Aligned_cols=46 Identities=13% Similarity=0.398 Sum_probs=30.9
Q ss_pred CCeeEEEEeccchhhhcc-hHHHHHHHHHhC--CCCcEEEecccCcHHH
Q 009512 283 DDIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEV 328 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~-~~~~i~~i~~~~--~~~q~i~~SAT~~~~~ 328 (533)
...+++++|++|.+.... +...+..++..+ ...++|+.|...|.++
T Consensus 96 ~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 96 RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 457789999999986542 345555666655 5667777777776554
No 236
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.11 E-value=0.032 Score=53.20 Aligned_cols=43 Identities=12% Similarity=0.408 Sum_probs=25.0
Q ss_pred eeEEEEeccchhhhc-chHHHHHHHHHhC--CC-CcEEEecccCcHH
Q 009512 285 IRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SL-PQILMYSATISQE 327 (533)
Q Consensus 285 i~~vVvDEah~~~~~-~~~~~i~~i~~~~--~~-~q~i~~SAT~~~~ 327 (533)
+++|++||+|.+... .+...+..++... .. .++++.|...|..
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~ 144 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQ 144 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHH
Confidence 468999999987532 3445555555554 22 3455544444443
No 237
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.06 E-value=0.034 Score=54.19 Aligned_cols=118 Identities=13% Similarity=0.104 Sum_probs=56.5
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCC
Q 009512 169 ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGD 248 (533)
Q Consensus 169 i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~ 248 (533)
+..|.-+++.|++|+|||...+..+.. +.. ..+.+++|+.-- +-..++...+.......++.......+.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~-~~~--------~~g~~vl~iS~E-~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 96 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALD-LIT--------QHGVRVGTISLE-EPVVRTARRLLGQYAGKRLHLPDTVFIY 96 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHH-HHH--------hcCceEEEEEcc-cCHHHHHHHHHHHHhCCCcccCCccccc
Confidence 446778899999999999754433333 221 225668887642 2233333333333222222110000011
Q ss_pred chHHHH----HHHHcCCcee-e-----cChHHHHHHHHcCCCCCCCeeEEEEeccchhhh
Q 009512 249 AMARQV----YRIQQGVELI-V-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 249 ~~~~~~----~~l~~~~~Ii-v-----~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~ 298 (533)
. .... ..+.....+. + .|++.+...+..... -..+++||||..+.+..
T Consensus 97 ~-~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 97 T-LEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAV-SHGIQHIIIDNLSIMVS 154 (271)
T ss_pred c-HHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHh-cCCceEEEECCHHHHhc
Confidence 1 1111 1221111222 2 155556555543211 12578999999998764
No 238
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.04 E-value=0.022 Score=56.91 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=26.6
Q ss_pred eEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccC
Q 009512 286 RMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 286 ~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~ 324 (533)
.++++||+||+. ..|-..++..+.+..++++.||-
T Consensus 106 tiLflDEIHRfn----K~QQD~lLp~vE~G~iilIGATT 140 (436)
T COG2256 106 TILFLDEIHRFN----KAQQDALLPHVENGTIILIGATT 140 (436)
T ss_pred eEEEEehhhhcC----hhhhhhhhhhhcCCeEEEEeccC
Confidence 369999999975 34445666777788899999984
No 239
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.04 E-value=0.021 Score=59.07 Aligned_cols=134 Identities=12% Similarity=0.143 Sum_probs=76.9
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHH-HHHHHHHHHHHHhcCCCCeEEEEEcCCchHH
Q 009512 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRE-LCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 252 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~-L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 252 (533)
-.++.|..|||||.+..+-++..++.. ..+.+++++.++.. |...+...+......+++....-....+.
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-------~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~-- 73 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-------KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM-- 73 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-------CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--
Confidence 357899999999998888777777652 14577999999987 44447777776655555432221111110
Q ss_pred HHHHHHc-CCceeecCh-HHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC---CCCcEEEecccCcH
Q 009512 253 QVYRIQQ-GVELIVGTP-GRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI---SLPQILMYSATISQ 326 (533)
Q Consensus 253 ~~~~l~~-~~~Iiv~Tp-~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~---~~~q~i~~SAT~~~ 326 (533)
. ..+.. +..|++..- +...++ .....+.++.+|||..+... .+..++.++ .....+.+|.+++.
T Consensus 74 ~-i~~~~~g~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 74 E-IKILNTGKKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred E-EEecCCCeEEEeecccCChhHh-----hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCC
Confidence 0 01112 445665442 111111 12234689999999987543 333333333 22224777888764
No 240
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.03 E-value=0.055 Score=64.09 Aligned_cols=64 Identities=25% Similarity=0.272 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009512 157 MPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g--~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
.+++-|.+++..++.. +-++|.|..|+|||++.- .++..+... ....+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l-----~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFR-AVMSAVNML-----PESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHH-HHHHHHHHH-----hhccCceEEEEechHHHHHHH
Confidence 6899999999999954 678999999999998632 222222110 013456788999997666544
No 241
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.01 E-value=0.02 Score=57.63 Aligned_cols=131 Identities=18% Similarity=0.230 Sum_probs=72.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCch
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.++-+.+.||||.|||+...-.+....+. .++...+||.+-|--.+. .++++.+++.+++.+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~-------~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~v------- 265 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVML-------KKKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEV------- 265 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhh-------ccCcceEEEEeccchhhH--HHHHHHHHHHhCCceEE-------
Confidence 37788999999999998754333333311 134455666665533322 35566665555554433
Q ss_pred HHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhh-cchHHHHHHHHHhC-CCCcEEEecccCc-HH
Q 009512 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATIS-QE 327 (533)
Q Consensus 251 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~-~~~~~~i~~i~~~~-~~~q~i~~SAT~~-~~ 327 (533)
+-+|.-|...+. .+.++++|.||=+-+-.. .....++...+..- +..-.+.+|||.. .+
T Consensus 266 --------------v~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~d 327 (407)
T COG1419 266 --------------VYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYED 327 (407)
T ss_pred --------------ecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHH
Confidence 334444444443 245567888887775321 11334444444444 2334567788874 44
Q ss_pred HHHHHHhh
Q 009512 328 VEKMSSSI 335 (533)
Q Consensus 328 ~~~~~~~~ 335 (533)
+..+...|
T Consensus 328 lkei~~~f 335 (407)
T COG1419 328 LKEIIKQF 335 (407)
T ss_pred HHHHHHHh
Confidence 55555544
No 242
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.00 E-value=0.031 Score=51.55 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=30.0
Q ss_pred CCeeEEEEeccchhhh-cchHHHHHHHHHhC-CCCcEEEecccCcHHHHHHH
Q 009512 283 DDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATISQEVEKMS 332 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~-~~~~~~i~~i~~~~-~~~q~i~~SAT~~~~~~~~~ 332 (533)
+++++|++|-+.+... ......+..++... +..-.+.+|||...+....+
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~ 133 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQA 133 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHH
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHH
Confidence 3567899999876532 22345566666665 44466778999865443333
No 243
>PF13173 AAA_14: AAA domain
Probab=95.96 E-value=0.13 Score=43.75 Aligned_cols=39 Identities=10% Similarity=0.225 Sum_probs=27.4
Q ss_pred CeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccC
Q 009512 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~ 324 (533)
.-.+|++||+|.+. ++...+..+....++.++++.+...
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNGPNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhccCceEEEEccch
Confidence 45689999999985 4677777777765555666654443
No 244
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.96 E-value=0.048 Score=49.74 Aligned_cols=48 Identities=27% Similarity=0.245 Sum_probs=31.9
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009512 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 175 vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
+++.|++|+|||...+-.+...+. .+.+++|++.. +-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~----------~g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA----------RGEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH----------CCCcEEEEECC-CCHHHHHHHHHHc
Confidence 689999999999865444443332 35668888653 5556666666665
No 245
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.91 E-value=0.083 Score=56.78 Aligned_cols=150 Identities=11% Similarity=0.150 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHh---CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009512 157 MPTPVQMQAIPSAL---SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~---~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
-|+|.-.+-|..++ ..+-.++.+|-|.|||.+..+.+. ++.. ..+.+++|.+|...-+.++.+.++.+
T Consensus 169 ~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~--------f~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 169 APSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMIS--------FLEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred CCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHH--------hcCCeEEEECCChhhHHHHHHHHHHH
Confidence 45666666555554 567788999999999987554444 3322 12567999999999999888887777
Q ss_pred hcCCC--------CeEEEEEcCCchHHH-H-HHHHcC-CceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchH
Q 009512 234 GKGLP--------FKTALVVGGDAMARQ-V-YRIQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFR 302 (533)
Q Consensus 234 ~~~~~--------~~~~~~~gg~~~~~~-~-~~l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~ 302 (533)
...++ .++..+.||...-.. . .....| ..|.+.+-. .+...-..++++|+|||.-+...- .
T Consensus 240 le~lg~~~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~~~-l 311 (752)
T PHA03333 240 VHAYQHKPWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNPGA-L 311 (752)
T ss_pred HHHhccccccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCHHH-H
Confidence 65332 122223332210000 0 000001 223332210 122222457899999999876533 2
Q ss_pred HHHHHHHHhCCCCcEEEecccC
Q 009512 303 DQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 303 ~~i~~i~~~~~~~q~i~~SAT~ 324 (533)
..+.-.+.. ...+++++|.+.
T Consensus 312 ~aIlP~l~~-~~~k~IiISS~~ 332 (752)
T PHA03333 312 LSVLPLMAV-KGTKQIHISSPV 332 (752)
T ss_pred HHHHHHHcc-CCCceEEEeCCC
Confidence 234444433 355666666664
No 246
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.89 E-value=0.1 Score=54.17 Aligned_cols=46 Identities=15% Similarity=0.392 Sum_probs=26.6
Q ss_pred eeEEEEeccchhhhcc-hHHHHHHHHHhC--CCCcEEEecccCcHHHHH
Q 009512 285 IRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEVEK 330 (533)
Q Consensus 285 i~~vVvDEah~~~~~~-~~~~i~~i~~~~--~~~q~i~~SAT~~~~~~~ 330 (533)
.++||+||+|.+.... ....+..++..+ ...++|+.|...|..+..
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~ 248 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPG 248 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhh
Confidence 5689999999875432 223344455444 345666555545555443
No 247
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.88 E-value=0.055 Score=59.81 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 009512 365 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGR 444 (533)
Q Consensus 365 ~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~ 444 (533)
.|-...+..+......+.++||.++++.-+..+.+.|++..+..+..+||+++..+|.........|..+|+|+|..+.
T Consensus 174 GKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal- 252 (679)
T PRK05580 174 GKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL- 252 (679)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-
Confidence 3443333333333334668999999999999999999877788999999999999999999999999999999997533
Q ss_pred cCCCCCccEEEEcC
Q 009512 445 GVELLGVRQVIIFD 458 (533)
Q Consensus 445 Gldi~~v~~VI~~~ 458 (533)
-+.+.++.+||...
T Consensus 253 ~~p~~~l~liVvDE 266 (679)
T PRK05580 253 FLPFKNLGLIIVDE 266 (679)
T ss_pred cccccCCCEEEEEC
Confidence 25567788888654
No 248
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.0059 Score=58.87 Aligned_cols=28 Identities=36% Similarity=0.427 Sum_probs=20.3
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHh
Q 009512 170 LSGKSLLVSANTGSGKTASFLVPVISQCAN 199 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~llp~l~~l~~ 199 (533)
++..|+++.+|||||||+.+. -+..+++
T Consensus 95 L~KSNILLiGPTGsGKTlLAq--TLAk~Ln 122 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ--TLAKILN 122 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH--HHHHHhC
Confidence 456789999999999998543 3444443
No 249
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.83 E-value=0.062 Score=56.16 Aligned_cols=51 Identities=12% Similarity=0.392 Sum_probs=31.0
Q ss_pred CeeEEEEeccchhhhcc-hHHHHHHHHHhC--CCCcEEEecccCcHHHHHHHHh
Q 009512 284 DIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEVEKMSSS 334 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~~-~~~~i~~i~~~~--~~~q~i~~SAT~~~~~~~~~~~ 334 (533)
..+++++||+|.+.... ....+..++..+ ...++|+.|.+.|.++..+...
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~r 255 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEER 255 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHH
Confidence 56789999999876432 234444554433 4456666666667666544333
No 250
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.79 E-value=0.05 Score=57.89 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q 009512 365 KKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGILGR 444 (533)
Q Consensus 365 ~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~~~ 444 (533)
.|-...+.++......+.++||.++++.-+..+++.|++..+..+..+||+++..+|........+|+.+|+|+|..+-.
T Consensus 9 GKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf 88 (505)
T TIGR00595 9 GKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF 88 (505)
T ss_pred CHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc
Confidence 34444444444333446689999999999999999998778888999999999999999999999999999999975332
Q ss_pred cCCCCCccEEEEcC
Q 009512 445 GVELLGVRQVIIFD 458 (533)
Q Consensus 445 Gldi~~v~~VI~~~ 458 (533)
..+.++.+||...
T Consensus 89 -~p~~~l~lIIVDE 101 (505)
T TIGR00595 89 -LPFKNLGLIIVDE 101 (505)
T ss_pred -CcccCCCEEEEEC
Confidence 4567788888643
No 251
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.73 E-value=0.066 Score=58.61 Aligned_cols=94 Identities=18% Similarity=0.126 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcC-CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q 009512 364 NKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTG-MKALSIHGEKPMKERREIMRSFLVGEVPVIVATGIL 442 (533)
Q Consensus 364 ~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~-~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~ 442 (533)
+.|....+.++......+..+||.++....+..+...|+..++ ..+..+|++++..+|........+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 4677777777766666677899999999999999999987887 789999999999999999999999999999999863
Q ss_pred cccCCCCCccEEEEcC
Q 009512 443 GRGVELLGVRQVIIFD 458 (533)
Q Consensus 443 ~~Gldi~~v~~VI~~~ 458 (533)
-=.-++++..||..+
T Consensus 251 -vFaP~~~LgLIIvdE 265 (665)
T PRK14873 251 -VFAPVEDLGLVAIWD 265 (665)
T ss_pred -EEeccCCCCEEEEEc
Confidence 345667788888755
No 252
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.70 E-value=0.087 Score=52.73 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHhCCC----cEEEEccCCCchhHHHHH
Q 009512 158 PTPVQMQAIPSALSGK----SLLVSANTGSGKTASFLV 191 (533)
Q Consensus 158 p~~~Q~~~i~~i~~g~----~vli~a~TGsGKT~~~ll 191 (533)
.+|||...|..+.... -.|+.||.|.|||..+..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 4799999999988443 378999999999986544
No 253
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.69 E-value=0.054 Score=60.58 Aligned_cols=72 Identities=26% Similarity=0.231 Sum_probs=53.8
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhc
Q 009512 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
..++|-|.+++.. ....++|.|..|||||.+ +..-+.+++... .-...++|+|+.|+..|..+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~-----~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRV-LTHRIAWLLSVE-----NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHcC-----CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3588999999864 356899999999999987 444445555321 12345699999999999999888887754
No 254
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.68 E-value=0.066 Score=51.56 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=31.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHH
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA 230 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~ 230 (533)
.+.++++.|++|+|||..+.. +...+.. .+. -++.+++.+|+.++...+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~A-i~~~l~~---------~g~-sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIA-IGNELLK---------AGI-SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHH-HHHHHHH---------cCC-eEEEEEHHHHHHHHHHHH
Confidence 678999999999999975332 2333332 233 445566678877655543
No 255
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.64 E-value=0.072 Score=50.25 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=16.1
Q ss_pred CCCcEEEEccCCCchhHHH
Q 009512 171 SGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~ 189 (533)
.+..+++.|++|+|||..+
T Consensus 37 ~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4567999999999999854
No 256
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.64 E-value=0.032 Score=53.76 Aligned_cols=44 Identities=11% Similarity=0.290 Sum_probs=29.6
Q ss_pred CCCCCeeEEEEeccchhhhcchHHHHHHHHHhC-CCCcEEEecccC
Q 009512 280 IELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-SLPQILMYSATI 324 (533)
Q Consensus 280 ~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~~~q~i~~SAT~ 324 (533)
...+.++.||+||||.|-... ...+++.++.. ...++++...-+
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCCh
Confidence 446678999999999987543 45556666664 345666665554
No 257
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=95.63 E-value=0.072 Score=55.65 Aligned_cols=147 Identities=12% Similarity=0.104 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHh------CC----CcEEEEccCCCchhHHHH-HHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHH
Q 009512 157 MPTPVQMQAIPSAL------SG----KSLLVSANTGSGKTASFL-VPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 225 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~------~g----~~vli~a~TGsGKT~~~l-lp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q 225 (533)
.+-|||.-++-.++ +| +.++|..|-+-|||..+. +.+...+... ..+....|++|+.+-+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-------~~~~~~~i~A~s~~qa~~ 133 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-------RSGAGIYILAPSVEQAAN 133 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-------hcCCcEEEEeccHHHHHH
Confidence 45599999999888 22 247999999999997544 2222233321 346679999999999999
Q ss_pred HHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHcC-CceeecChHHHHHHHHcC--CCCCCCeeEEEEeccchhhhcchH
Q 009512 226 VEEQAKLLGKGLPFKTALVVGGDAMARQVYRIQQG-VELIVGTPGRLIDLLMKH--DIELDDIRMFVLDEVDCMLQRGFR 302 (533)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-~~Iiv~Tp~~l~~~l~~~--~~~l~~i~~vVvDEah~~~~~~~~ 302 (533)
....++......+ .... ...+... ..|+..--...+..+... ..+-.+..+.|+||.|...+.+
T Consensus 134 ~F~~ar~mv~~~~----------~l~~-~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-- 200 (546)
T COG4626 134 SFNPARDMVKRDD----------DLRD-LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-- 200 (546)
T ss_pred hhHHHHHHHHhCc----------chhh-hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--
Confidence 8888877654432 0000 0000011 112221111112222222 2333456789999999887652
Q ss_pred HHHHHHHHhC---CCCcEEEeccc
Q 009512 303 DQVMQIFRAI---SLPQILMYSAT 323 (533)
Q Consensus 303 ~~i~~i~~~~---~~~q~i~~SAT 323 (533)
..+..+..-+ +..+++..|..
T Consensus 201 ~~~~~~~~g~~ar~~~l~~~ITT~ 224 (546)
T COG4626 201 DMYSEAKGGLGARPEGLVVYITTS 224 (546)
T ss_pred HHHHHHHhhhccCcCceEEEEecC
Confidence 3444443333 67778777653
No 258
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.56 E-value=0.039 Score=61.02 Aligned_cols=70 Identities=23% Similarity=0.136 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.+++-|.+++.. ....++|.|..|||||.+ +..-+.+++... .-...++|+++.|+..|..+.+.+..+.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~v-L~~Ria~Li~~~-----~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRV-ITNKIAHLIRGC-----GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhc-----CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 478899999865 356799999999999987 444444544310 1123569999999999999888777654
No 259
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.56 E-value=0.082 Score=50.02 Aligned_cols=42 Identities=10% Similarity=0.279 Sum_probs=24.5
Q ss_pred CeeEEEEeccchhhhcchHHHHHHHHHhC--CCCcEEEecccCcH
Q 009512 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQ 326 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~~~~~~i~~i~~~~--~~~q~i~~SAT~~~ 326 (533)
..++||+||+|.+... -...+..++... ....+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 3568999999987432 234444555443 22335666776543
No 260
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.54 E-value=0.11 Score=50.24 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.3
Q ss_pred CcEEEEccCCCchhHHHH
Q 009512 173 KSLLVSANTGSGKTASFL 190 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~l 190 (533)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999998653
No 261
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.49 E-value=0.19 Score=50.00 Aligned_cols=37 Identities=30% Similarity=0.417 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHH
Q 009512 155 YDMPTPVQMQAIPSAL----SGK---SLLVSANTGSGKTASFLV 191 (533)
Q Consensus 155 ~~~p~~~Q~~~i~~i~----~g~---~vli~a~TGsGKT~~~ll 191 (533)
+..++|||..++..+. .|+ -.|+.||.|.||+..+..
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 4578899999998876 444 378999999999986543
No 262
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.49 E-value=0.072 Score=59.56 Aligned_cols=72 Identities=25% Similarity=0.230 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhc
Q 009512 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
..++|-|.+++.. ....++|.|..|||||.+. ..-+.+++... .-...++|+|+-|+..|..+.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl-~~Ria~Li~~~-----~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAA--PLGNMLVLAGAGSGKTRVL-VHRIAWLMQVE-----NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHcC-----CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3588999999864 3468999999999999874 44444554311 12345699999999999999888877654
No 263
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.43 E-value=0.2 Score=52.35 Aligned_cols=50 Identities=16% Similarity=0.418 Sum_probs=28.9
Q ss_pred CeeEEEEeccchhhhcc-hHHHHHHHHHhC--CCCcEEEecccCcHHHHHHHH
Q 009512 284 DIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEVEKMSS 333 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~~-~~~~i~~i~~~~--~~~q~i~~SAT~~~~~~~~~~ 333 (533)
..++|++||+|.+.+.. ....+..++..+ ...++|+.|...|..+..+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~ 246 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQD 246 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHH
Confidence 45689999999876432 233444444443 234566655556665554433
No 264
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.42 E-value=0.097 Score=61.95 Aligned_cols=122 Identities=25% Similarity=0.213 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC-
Q 009512 158 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG- 236 (533)
Q Consensus 158 p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~- 236 (533)
.|+-|.++|. ..+++++|.|..|||||.+..--++..+... ..-.++|+|+=|+..+..+.+.+.+....
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-------~~~~~il~~tFt~~aa~e~~~ri~~~l~~~ 72 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-------VDIDRLLVVTFTNAAAREMKERIEEALQKA 72 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-------CCHhhEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 5788999997 3688999999999999998655555555431 11245999999999998877776654321
Q ss_pred CCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHc-CCCCCC-CeeEEEEeccch
Q 009512 237 LPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-HDIELD-DIRMFVLDEVDC 295 (533)
Q Consensus 237 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~-~~~~l~-~i~~vVvDEah~ 295 (533)
..-.. .......|. ..-...-|+|...+...+.+ ....+. +-.+=|.||...
T Consensus 73 ~~~~p----~~~~L~~q~---~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 73 LQQEP----NSKHLRRQL---ALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred HhcCc----hhHHHHHHH---hhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 11000 000111121 12245678999988654444 322111 123456888875
No 265
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.39 E-value=0.062 Score=53.39 Aligned_cols=63 Identities=29% Similarity=0.313 Sum_probs=41.0
Q ss_pred HHHcCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH
Q 009512 150 IEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 150 l~~~g~~~p~~~Q~~~i~~i~-~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
+...|. +++.|...+..+. .+.+++++|+||||||+. +-.++..+... ..+.+++.+=.+.||
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~-------~~~~rivtiEd~~El 186 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS-------APEDRLVILEDTAEI 186 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC-------CCCceEEEecCCccc
Confidence 344444 5567777766555 677999999999999983 44444444321 123467777777777
No 266
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.35 E-value=0.57 Score=49.20 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchhHHHHHHH
Q 009512 172 GKSLLVSANTGSGKTASFLVPV 193 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~ 193 (533)
|+-+++.||||+|||+.....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 3457889999999998755433
No 267
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.34 E-value=0.038 Score=46.94 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=12.9
Q ss_pred EEEEccCCCchhHHH
Q 009512 175 LLVSANTGSGKTASF 189 (533)
Q Consensus 175 vli~a~TGsGKT~~~ 189 (533)
+++.||+|+|||..+
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999853
No 268
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.34 E-value=0.099 Score=54.88 Aligned_cols=91 Identities=22% Similarity=0.151 Sum_probs=57.4
Q ss_pred CCCH-HHHHHHHHcCCCCCCH----HHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceE
Q 009512 141 SLSQ-KLLQNIEAAGYDMPTP----VQMQAIPSAL--SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLA 213 (533)
Q Consensus 141 ~l~~-~l~~~l~~~g~~~p~~----~Q~~~i~~i~--~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~ 213 (533)
+..+ -|..+|+++--.+++. +|.+-=..+. .+.-++|+|..|||||++++--+.-.+...+... .+..+
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l----~~k~v 263 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL----QAKPV 263 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc----ccCce
Confidence 3444 4555677664444432 4444444444 3445789999999999987755544444433222 23339
Q ss_pred EEEcccHHHHHHHHHHHHHHhc
Q 009512 214 MVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 214 Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
||+.|++.+..-+.+.+-.++.
T Consensus 264 lvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 264 LVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EEEcCcHHHHHHHHHhchhhcc
Confidence 9999999998877777766654
No 269
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=95.31 E-value=0.093 Score=53.47 Aligned_cols=46 Identities=15% Similarity=0.410 Sum_probs=32.7
Q ss_pred CeeEEEEeccchhhhc-chHHHHHHHHHhC--CCCcEEEecccCcHHHH
Q 009512 284 DIRMFVLDEVDCMLQR-GFRDQVMQIFRAI--SLPQILMYSATISQEVE 329 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~-~~~~~i~~i~~~~--~~~q~i~~SAT~~~~~~ 329 (533)
+++++++|+++.+... .....+-.++..+ ...|+|+.|..+|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 5778999999987654 3455555666665 34588888888887664
No 270
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.29 E-value=0.29 Score=54.26 Aligned_cols=28 Identities=14% Similarity=0.570 Sum_probs=18.7
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHh
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRA 311 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~ 311 (533)
..+.+|||||+|.+...+ ...+..+++.
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHH
Confidence 446789999999987542 3445555543
No 271
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.23 E-value=0.16 Score=61.07 Aligned_cols=64 Identities=23% Similarity=0.264 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHH
Q 009512 156 DMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 225 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g--~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q 225 (533)
..+++.|.+++..++.+ +-++|.+..|+|||++ +-.++..+... ....+..++.++||-.-+..
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l-----~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL-----PESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh-----hcccCceEEEECCcHHHHHH
Confidence 36899999999999964 5688999999999985 33333333210 11235678899999766554
No 272
>PLN03025 replication factor C subunit; Provisional
Probab=95.18 E-value=0.25 Score=49.38 Aligned_cols=39 Identities=15% Similarity=0.256 Sum_probs=23.9
Q ss_pred CeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
..+++|+||+|.|.... ...+..+++..+..-.+.++++
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALACN 137 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEeC
Confidence 57899999999986433 4445555555443333444444
No 273
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.18 E-value=0.13 Score=55.01 Aligned_cols=134 Identities=13% Similarity=0.165 Sum_probs=81.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCC-CCe-EEEEEcCC
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGL-PFK-TALVVGGD 248 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~-~~~-~~~~~gg~ 248 (533)
..+-.++..|--.|||.... +++..++. ...+-+++|.+|.+..++.+.+++..+.+.. +-. +..+. |.
T Consensus 253 kqk~tVflVPRR~GKTwivv-~iI~~ll~-------s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vk-Ge 323 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLV-PLIALALA-------TFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVK-GE 323 (738)
T ss_pred hccceEEEecccCCchhhHH-HHHHHHHH-------hCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeec-Cc
Confidence 34567889999999998544 66655543 1357789999999999999998888765432 111 11222 22
Q ss_pred chHHHHHHHHcC--CceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccC
Q 009512 249 AMARQVYRIQQG--VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 249 ~~~~~~~~l~~~--~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~ 324 (533)
.. .....+| ..|.++|- ...+...-..++++|+|||+-+-+..+...+ -.+.. .++++|++|.|-
T Consensus 324 ~I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~al~~il-p~l~~-~n~k~I~ISS~N 390 (738)
T PHA03368 324 TI---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIM-GFLNQ-TNCKIIFVSSTN 390 (738)
T ss_pred EE---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHHHHHHH-HHHhc-cCccEEEEecCC
Confidence 21 0112223 24555531 1122333457899999999987654433333 32222 488999999884
No 274
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.14 E-value=0.25 Score=51.76 Aligned_cols=53 Identities=25% Similarity=0.383 Sum_probs=34.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.|.-+++.+++|+|||+..+- +...+.. .+.+++|+.-. +-..|+...++++.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq-~a~~~a~---------~g~~vlYvs~E-es~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQ-VAARLAA---------AGGKVLYVSGE-ESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHH-HHHHHHh---------cCCeEEEEEcc-ccHHHHHHHHHHcC
Confidence 456689999999999985333 3322221 24568888754 45567766666653
No 275
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.13 E-value=0.088 Score=58.44 Aligned_cols=69 Identities=23% Similarity=0.143 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 158 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 158 p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
++|-|.+++.. ...+++|.|..|||||.+. +--+.+++... .....++|+|+.|+..+.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L-~~ri~~ll~~~-----~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVI-TNKIAYLIQNC-----GYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHH-HHHHHHHHHhc-----CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889998864 4568999999999999874 44444444310 1134569999999999999888777654
No 276
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.09 E-value=1.5 Score=47.11 Aligned_cols=124 Identities=17% Similarity=0.271 Sum_probs=78.1
Q ss_pred cchhhHHHHHHHHHhcc-CCCCCEEEEEcCcccHHHHHHHHHhhcC-------CeEEEEcCCCCHHHHHHHHHHHhc---
Q 009512 362 ESNKKKQKLFDILMSKQ-HFTPPAVVYVGSRLGADLLSNAISVTTG-------MKALSIHGEKPMKERREIMRSFLV--- 430 (533)
Q Consensus 362 ~~~~k~~~l~~~l~~~~-~~~~~~lIF~~s~~~~~~l~~~l~~~~~-------~~~~~ih~~~~~~~r~~~~~~f~~--- 430 (533)
+.....+.|...+.+.. .-.+-+++|++|..-...+.+.+. ..| .+.+.+-..-+ -..+++.|..
T Consensus 609 ~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~-~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~ 684 (821)
T KOG1133|consen 609 ESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWE-QNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAE 684 (821)
T ss_pred CChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHH-hcchHHHhhccchhhccCccc---HHHHHHHHHHHhh
Confidence 34444555555544432 223569999999988888887776 232 22222222222 3456666654
Q ss_pred -CCCcEEEEe--ccccccCCCCC--ccEEEEcCCCCC--------------------------------HhHHHHhhccc
Q 009512 431 -GEVPVIVAT--GILGRGVELLG--VRQVIIFDMPNS--------------------------------IKEYVHQIGRA 473 (533)
Q Consensus 431 -g~~~VLvaT--~~~~~Gldi~~--v~~VI~~~~p~s--------------------------------~~~y~qriGR~ 473 (533)
|.-.+|+|. .-+++|||+.+ .+.|+..++|.. +....|-||||
T Consensus 685 ~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRA 764 (821)
T KOG1133|consen 685 RGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRA 764 (821)
T ss_pred cCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 444566554 57899999987 678888887642 12346889999
Q ss_pred CCCCCccEEEEEecCc
Q 009512 474 SQMGDEGTAIVFVNEE 489 (533)
Q Consensus 474 gR~g~~g~~~~l~~~~ 489 (533)
-|.-++-.++++++..
T Consensus 765 IRH~~DYA~i~LlD~R 780 (821)
T KOG1133|consen 765 IRHRKDYASIYLLDKR 780 (821)
T ss_pred HhhhccceeEEEehhh
Confidence 9987776677777653
No 277
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.06 E-value=0.34 Score=50.36 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=16.2
Q ss_pred CcEEEEccCCCchhHHHHHHH
Q 009512 173 KSLLVSANTGSGKTASFLVPV 193 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp~ 193 (533)
..+++++++|+|||++..-.+
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 357889999999998755433
No 278
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.06 E-value=0.3 Score=44.25 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=51.4
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHH
Q 009512 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ 253 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 253 (533)
=.++.+|+.||||...+- .+.++. ..+.++++..|-..- ++ +...+.-.-|..
T Consensus 6 l~~i~gpM~SGKT~eLl~-r~~~~~---------~~g~~v~vfkp~iD~---------R~----~~~~V~Sr~G~~---- 58 (201)
T COG1435 6 LEFIYGPMFSGKTEELLR-RARRYK---------EAGMKVLVFKPAIDT---------RY----GVGKVSSRIGLS---- 58 (201)
T ss_pred EEEEEccCcCcchHHHHH-HHHHHH---------HcCCeEEEEeccccc---------cc----ccceeeeccCCc----
Confidence 358899999999985332 222222 346678888885221 11 111122112221
Q ss_pred HHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchh
Q 009512 254 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCM 296 (533)
Q Consensus 254 ~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~ 296 (533)
...++|-.+..+.+.+....... .++.|.+|||+-+
T Consensus 59 ------~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~ 94 (201)
T COG1435 59 ------SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFF 94 (201)
T ss_pred ------ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhC
Confidence 13466667777777776543322 2889999999954
No 279
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.06 E-value=0.53 Score=45.64 Aligned_cols=130 Identities=14% Similarity=0.176 Sum_probs=68.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEc-ccH--HHHHHHHHHHHHHhcCCCCeEEEEEcC
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT-PTR--ELCIQVEEQAKLLGKGLPFKTALVVGG 247 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~-Ptr--~L~~Q~~~~~~~~~~~~~~~~~~~~gg 247 (533)
.+..+++.+++|+|||..+...+.. +. ..+.++.++. .+. ..+.|+...+. ..++.+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~---------~~~~~v~~i~~D~~ri~~~~ql~~~~~----~~~~~~~~---- 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FH---------GKKKTVGFITTDHSRIGTVQQLQDYVK----TIGFEVIA---- 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HH---------HcCCeEEEEecCCCCHHHHHHHHHHhh----hcCceEEe----
Confidence 4467899999999999865543322 21 1233344443 222 34455443333 22332211
Q ss_pred CchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc-chHHHHHHHHHhCCC-CcEEEecccC-
Q 009512 248 DAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAISL-PQILMYSATI- 324 (533)
Q Consensus 248 ~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~-~~~~~i~~i~~~~~~-~q~i~~SAT~- 324 (533)
..+|..+...+..-. ...++++||+|-+-+.... .....+..++....+ ..++.+|||.
T Consensus 136 -----------------~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~ 197 (270)
T PRK06731 136 -----------------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK 197 (270)
T ss_pred -----------------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC
Confidence 124444444333210 1235789999999876422 223334444444433 3456689986
Q ss_pred cHHHHHHHHhhc
Q 009512 325 SQEVEKMSSSIS 336 (533)
Q Consensus 325 ~~~~~~~~~~~~ 336 (533)
..+....++.|.
T Consensus 198 ~~d~~~~~~~f~ 209 (270)
T PRK06731 198 SKDMIEIITNFK 209 (270)
T ss_pred HHHHHHHHHHhC
Confidence 457777777664
No 280
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.02 E-value=0.22 Score=51.97 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=15.0
Q ss_pred EEEEccCCCchhHHHHHH
Q 009512 175 LLVSANTGSGKTASFLVP 192 (533)
Q Consensus 175 vli~a~TGsGKT~~~llp 192 (533)
+|++||.|+|||.++.+.
T Consensus 43 ~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 43 YIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 699999999999865543
No 281
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.02 E-value=0.043 Score=53.98 Aligned_cols=61 Identities=23% Similarity=0.315 Sum_probs=44.4
Q ss_pred CCCCCCHHHHHHHHHHhCCC-cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHH
Q 009512 154 GYDMPTPVQMQAIPSALSGK-SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ 225 (533)
Q Consensus 154 g~~~p~~~Q~~~i~~i~~g~-~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q 225 (533)
.|..+++-|...+-.+...+ |+|+++.||||||+ ++-++.... ...-+++.+--|.||--+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT--lLNal~~~i---------~~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT--LLNALSGFI---------DSDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH--HHHHHHhcC---------CCcccEEEEeehhhhccC
Confidence 56788999999888877665 99999999999998 333332221 223378988888888443
No 282
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.01 E-value=0.068 Score=55.09 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHhCCCcEEEEccCCCchhHHHH
Q 009512 158 PTPVQMQAIPSALSGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 158 p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~l 190 (533)
+-......+..+..++++++.+++|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 445566667777789999999999999998653
No 283
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.055 Score=54.01 Aligned_cols=99 Identities=25% Similarity=0.323 Sum_probs=56.0
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHH
Q 009512 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 252 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 252 (533)
||++..+|+|+|||+.+ ++|| ...|+....+.||+..+-
T Consensus 385 RNilfyGPPGTGKTm~A------------------------------relA-----------r~SGlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA------------------------------RELA-----------RHSGLDYAIMTGGDVAPL 423 (630)
T ss_pred hheeeeCCCCCCchHHH------------------------------HHHH-----------hhcCCceehhcCCCcccc
Confidence 78999999999999842 1222 223566777777754332
Q ss_pred HHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcc--------hHHHHHHHHHhC--CCCcEEEecc
Q 009512 253 QVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRG--------FRDQVMQIFRAI--SLPQILMYSA 322 (533)
Q Consensus 253 ~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~--------~~~~i~~i~~~~--~~~q~i~~SA 322 (533)
-.. -|+-...|.+.-......| ++.|||||.++-.. -+..+..++-+. ....++++=|
T Consensus 424 G~q--------aVTkiH~lFDWakkS~rGL----llFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlA 491 (630)
T KOG0742|consen 424 GAQ--------AVTKIHKLFDWAKKSRRGL----LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLA 491 (630)
T ss_pred chH--------HHHHHHHHHHHHhhcccce----EEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEec
Confidence 111 1233344555544432222 68999999877421 222333333333 4566777777
Q ss_pred cC
Q 009512 323 TI 324 (533)
Q Consensus 323 T~ 324 (533)
|-
T Consensus 492 tN 493 (630)
T KOG0742|consen 492 TN 493 (630)
T ss_pred cC
Confidence 75
No 284
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.00 E-value=0.12 Score=63.66 Aligned_cols=62 Identities=27% Similarity=0.276 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHH---HHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009512 156 DMPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFL---VPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g--~~vli~a~TGsGKT~~~l---lp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
..+++.|.+++..++++ +-++|.+..|+|||+... -++...+. ..+..++.++||-.-+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~---------~~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFE---------SEQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHH---------hcCCeEEEEeChHHHHHHH
Confidence 46899999999999865 457889999999998541 12222221 2456799999996665544
No 285
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.00 E-value=0.13 Score=47.91 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHH
Q 009512 174 SLLVSANTGSGKTASF 189 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~ 189 (533)
++|++||+|.|||+.+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6899999999999843
No 286
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.98 E-value=0.096 Score=57.40 Aligned_cols=98 Identities=16% Similarity=0.115 Sum_probs=84.1
Q ss_pred EEEecchhhHHHHHHHHHhccCCCCCEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q 009512 358 AIWVESNKKKQKLFDILMSKQHFTPPAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKPMKERREIMRSFLVGEVPVIV 437 (533)
Q Consensus 358 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLv 437 (533)
...+..+.|....++++......+..+||.++.+.....+.+.|+..+|.++..+|++++..+|.........|+.+|+|
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVI 301 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVI 301 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEE
Confidence 34456677888888888877777889999999999999999999989999999999999999999999999999999999
Q ss_pred EeccccccCCCCCccEEEE
Q 009512 438 ATGILGRGVELLGVRQVII 456 (533)
Q Consensus 438 aT~~~~~Gldi~~v~~VI~ 456 (533)
.|.. +-=.-++++..||.
T Consensus 302 GtRS-AlF~Pf~~LGLIIv 319 (730)
T COG1198 302 GTRS-ALFLPFKNLGLIIV 319 (730)
T ss_pred Eech-hhcCchhhccEEEE
Confidence 9986 33455667777776
No 287
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.96 E-value=0.17 Score=55.23 Aligned_cols=147 Identities=16% Similarity=0.213 Sum_probs=86.8
Q ss_pred HHHHcCCCCCCHHHHHHHHHHhCCC--cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009512 149 NIEAAGYDMPTPVQMQAIPSALSGK--SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 149 ~l~~~g~~~p~~~Q~~~i~~i~~g~--~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
.+.....+.+..-|.+.+..++..+ -+++.|+-|=|||.+.-+.+.. +... ....+++|.+|+.+-++.+
T Consensus 206 ~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~-------~~~~~iiVTAP~~~nv~~L 277 (758)
T COG1444 206 ELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARL-------AGSVRIIVTAPTPANVQTL 277 (758)
T ss_pred HHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHh-------cCCceEEEeCCCHHHHHHH
Confidence 3444445556566666677777443 5788999999999887766532 2211 1145799999999998888
Q ss_pred HHHHHHHhcCCCCeEEEEEcC--CchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHH
Q 009512 227 EEQAKLLGKGLPFKTALVVGG--DAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQ 304 (533)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~gg--~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~ 304 (533)
.+.+.+-...+|.+....... ..... -.+...|=+-+|.... ..-+++|||||=.+. -+.
T Consensus 278 f~fa~~~l~~lg~~~~v~~d~~g~~~~~----~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lpl 339 (758)
T COG1444 278 FEFAGKGLEFLGYKRKVAPDALGEIREV----SGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPL 339 (758)
T ss_pred HHHHHHhHHHhCCccccccccccceeee----cCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHH
Confidence 887766655555443222111 11100 0011224444554332 115689999998653 455
Q ss_pred HHHHHHhCCCCcEEEecccC
Q 009512 305 VMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 305 i~~i~~~~~~~q~i~~SAT~ 324 (533)
+..++.. -+.++||.|+
T Consensus 340 L~~l~~~---~~rv~~sTTI 356 (758)
T COG1444 340 LHKLLRR---FPRVLFSTTI 356 (758)
T ss_pred HHHHHhh---cCceEEEeee
Confidence 5555554 3567888887
No 288
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.94 E-value=0.17 Score=52.63 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=23.8
Q ss_pred CeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCc
Q 009512 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~ 325 (533)
.-.+|++||+|++.. .+...++..+....++++.+|-.
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le~~~iilI~att~ 129 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVEDGTITLIGATTE 129 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhhcCcEEEEEeCCC
Confidence 456899999998753 22333444444566777766643
No 289
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.92 E-value=0.12 Score=57.21 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-ccccCCCCCccEEE
Q 009512 380 FTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LGRGVELLGVRQVI 455 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~---~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~-~~~Gldi~~v~~VI 455 (533)
.+.+++|.++++.-|...++.+++ ..++.+..+||+++..+|..++..+.+|+.+|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 466899999999999888877753 34789999999999999999999999999999999974 45567788888888
Q ss_pred E
Q 009512 456 I 456 (533)
Q Consensus 456 ~ 456 (533)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 6
No 290
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.91 E-value=0.01 Score=53.31 Aligned_cols=123 Identities=18% Similarity=0.181 Sum_probs=53.0
Q ss_pred EEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHHH
Q 009512 176 LVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQVY 255 (533)
Q Consensus 176 li~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 255 (533)
++.|+-|-|||.+.-+.+.. +.. ....+++|.+|+.+-++.+.+.+..-.+.++++......+. ....
T Consensus 1 VltA~RGRGKSa~lGl~~a~-l~~--------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~---~~~~ 68 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAA-LIQ--------KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIG---QIIK 68 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCC-SSS-------------EEEE-SS--S-HHHHHCC-------------------------
T ss_pred CccCCCCCCHHHHHHHHHHH-HHH--------hcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccc---cccc
Confidence 57899999999865443322 111 12256999999999888777766655554444331000000 0000
Q ss_pred HHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccC
Q 009512 256 RIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 256 ~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~ 324 (533)
....+..|-+..|+.+...- ...+++|||||=.+. -+.+..++. ....+.||.|.
T Consensus 69 ~~~~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaIp----~p~L~~ll~---~~~~vv~stTi 123 (177)
T PF05127_consen 69 LRFNKQRIEFVAPDELLAEK-------PQADLLIVDEAAAIP----LPLLKQLLR---RFPRVVFSTTI 123 (177)
T ss_dssp ----CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHC---CSSEEEEEEEB
T ss_pred cccccceEEEECCHHHHhCc-------CCCCEEEEechhcCC----HHHHHHHHh---hCCEEEEEeec
Confidence 01124667778887764332 134789999998653 455555543 34566777776
No 291
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.90 E-value=0.34 Score=48.72 Aligned_cols=40 Identities=13% Similarity=0.257 Sum_probs=23.8
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
...++||+||+|.+... ....+..++...+..-.+.++++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEeC
Confidence 45678999999987543 34455556655544333444444
No 292
>PRK09183 transposase/IS protein; Provisional
Probab=94.85 E-value=0.15 Score=49.26 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=18.3
Q ss_pred HhCCCcEEEEccCCCchhHHHH
Q 009512 169 ALSGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 169 i~~g~~vli~a~TGsGKT~~~l 190 (533)
+..+.++++.||+|+|||..+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 4568899999999999997544
No 293
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.82 E-value=0.022 Score=66.66 Aligned_cols=95 Identities=25% Similarity=0.460 Sum_probs=81.0
Q ss_pred CEEEEEcCcccHHHHHHHHHhhcCCeEEEEcCCCC-----------HHHHHHHHHHHhcCCCcEEEEeccccccCCCCCc
Q 009512 383 PAVVYVGSRLGADLLSNAISVTTGMKALSIHGEKP-----------MKERREIMRSFLVGEVPVIVATGILGRGVELLGV 451 (533)
Q Consensus 383 ~~lIF~~s~~~~~~l~~~l~~~~~~~~~~ih~~~~-----------~~~r~~~~~~f~~g~~~VLvaT~~~~~Gldi~~v 451 (533)
..++|++.+..+..+...++.........+.|.+. ...+.+++..|....+++|++|.++..|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899999999999998887666566555666442 2246789999999999999999999999999999
Q ss_pred cEEEEcCCCCCHhHHHHhhcccCCCC
Q 009512 452 RQVIIFDMPNSIKEYVHQIGRASQMG 477 (533)
Q Consensus 452 ~~VI~~~~p~s~~~y~qriGR~gR~g 477 (533)
+.|+.++.|.....|+|..||+-+..
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999997764
No 294
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.81 E-value=0.16 Score=50.66 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=24.4
Q ss_pred CeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
..++||+||+|.+........+..++...+....+.++++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4578999999988333344556666666544334444444
No 295
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.80 E-value=0.12 Score=55.60 Aligned_cols=47 Identities=11% Similarity=0.372 Sum_probs=29.9
Q ss_pred CCeeEEEEeccchhhhcc-hHHHHHHHHHhC--CCCcEEEecccCcHHHH
Q 009512 283 DDIRMFVLDEVDCMLQRG-FRDQVMQIFRAI--SLPQILMYSATISQEVE 329 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~-~~~~i~~i~~~~--~~~q~i~~SAT~~~~~~ 329 (533)
.++++|||||+|.+.... ....+..++..+ ...++|+.|-..|.++.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 356889999999875432 334455555555 34677776666665554
No 296
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.78 E-value=0.076 Score=49.12 Aligned_cols=19 Identities=42% Similarity=0.707 Sum_probs=15.8
Q ss_pred CcEEEEccCCCchhHHHHH
Q 009512 173 KSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~ll 191 (533)
-++++.+|+|.|||++.+.
T Consensus 49 P~liisGpPG~GKTTsi~~ 67 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILC 67 (333)
T ss_pred CceEeeCCCCCchhhHHHH
Confidence 3689999999999997543
No 297
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.70 E-value=0.12 Score=51.60 Aligned_cols=65 Identities=26% Similarity=0.331 Sum_probs=42.3
Q ss_pred HHHHHcCCCCCCHHHHHHHHHH-hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH
Q 009512 148 QNIEAAGYDMPTPVQMQAIPSA-LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 148 ~~l~~~g~~~p~~~Q~~~i~~i-~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
+.|...|+ +++.|.+.+..+ ..+++++++|+||||||+. +-.++..+... ....+++++-.+.||
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~-------~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQ-------DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhc-------CCCceEEEEcCCCcc
Confidence 34444554 456777777654 4778999999999999963 44444433211 234567888888777
No 298
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.66 E-value=0.18 Score=55.68 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchhHHHHHHH
Q 009512 172 GKSLLVSANTGSGKTASFLVPV 193 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~ 193 (533)
++-+++.+|||+|||++....+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA 206 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLA 206 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 3446889999999998655433
No 299
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.66 E-value=0.42 Score=52.06 Aligned_cols=40 Identities=10% Similarity=0.295 Sum_probs=23.1
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
...+++||||+|+|.... ...+...++.-+..-++++..|
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEecC
Confidence 467899999999886544 3334444554333323333334
No 300
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.66 E-value=0.72 Score=47.37 Aligned_cols=124 Identities=18% Similarity=0.178 Sum_probs=63.4
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEc--ccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchH
Q 009512 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT--PTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA 251 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~--Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 251 (533)
-+++++|+|+|||+...-.+...... .+.++.++. +.|..+. .+++.++...++....
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~---------~G~~V~Lit~Dt~R~aA~---eQLk~yAe~lgvp~~~-------- 284 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH---------MGKSVSLYTTDNYRIAAI---EQLKRYADTMGMPFYP-------- 284 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh---------cCCeEEEecccchhhhHH---HHHHHHHHhcCCCeee--------
Confidence 47789999999998765444332221 233444444 3344433 2444444433332211
Q ss_pred HHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhh-hcchHHHHHHHHHhC----CCCcEEEecccCcH
Q 009512 252 RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML-QRGFRDQVMQIFRAI----SLPQILMYSATISQ 326 (533)
Q Consensus 252 ~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~-~~~~~~~i~~i~~~~----~~~q~i~~SAT~~~ 326 (533)
+..+..+...+.. ..+++||+|=+-+.. +..-...+..++... +...++.+|||...
T Consensus 285 -------------~~~~~~l~~~l~~-----~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~ 346 (432)
T PRK12724 285 -------------VKDIKKFKETLAR-----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY 346 (432)
T ss_pred -------------hHHHHHHHHHHHh-----CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH
Confidence 0112233333331 456789999776542 122233444444443 22457788999865
Q ss_pred -HHHHHHHhh
Q 009512 327 -EVEKMSSSI 335 (533)
Q Consensus 327 -~~~~~~~~~ 335 (533)
.+......+
T Consensus 347 ~~~~~~~~~f 356 (432)
T PRK12724 347 HHTLTVLKAY 356 (432)
T ss_pred HHHHHHHHHh
Confidence 555555544
No 301
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.088 Score=56.76 Aligned_cols=40 Identities=13% Similarity=0.409 Sum_probs=24.6
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
...+++||||+|+|....+ ..+..+++..+..-.+.+.+|
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FILaTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLFATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEEEEC
Confidence 4578999999998865433 445555555444334444445
No 302
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.61 E-value=0.19 Score=52.94 Aligned_cols=42 Identities=12% Similarity=0.347 Sum_probs=25.0
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCc
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~ 325 (533)
.+.+++|+||+|.|....+ ..+...++..+..-++.|.+|-+
T Consensus 115 ~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fIlatte~ 156 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFILATTEV 156 (491)
T ss_pred CCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEEEEeCCh
Confidence 5788999999998865433 33444445433333444444533
No 303
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.61 E-value=0.45 Score=50.48 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=15.7
Q ss_pred cEEEEccCCCchhHHHHHH
Q 009512 174 SLLVSANTGSGKTASFLVP 192 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp 192 (533)
.+|++||.|+|||..+.+.
T Consensus 45 a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARII 63 (507)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999865543
No 304
>PTZ00293 thymidine kinase; Provisional
Probab=94.59 E-value=0.28 Score=45.47 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=25.0
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEccc
Q 009512 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT 219 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt 219 (533)
|+=.++.||++||||.-.+- .+.+.. ..+.+++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr-~i~~y~---------~ag~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMR-LVKRFT---------YSEKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHH-HHHHHH---------HcCCceEEEEec
Confidence 44468899999999975333 332222 235668888886
No 305
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=94.59 E-value=0.19 Score=56.42 Aligned_cols=72 Identities=24% Similarity=0.234 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhc
Q 009512 156 DMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
..++|-|.+++.. ....++|.|..|||||.+.. --+.+++... .-...++|+++-|+..|..+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~-~ria~Li~~~-----~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLT-HRIAHLIAEK-----NVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHH-HHHHHHHHcC-----CCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 3588999999875 35679999999999998744 3444444311 01234699999999999988888877643
No 306
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.57 E-value=0.2 Score=56.21 Aligned_cols=43 Identities=14% Similarity=0.356 Sum_probs=27.6
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCcH
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQ 326 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~~ 326 (533)
.+++++||||+|+|.... .+.+.++++..+..-+++|..|-+.
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEeCChh
Confidence 568899999999987543 3455566666555444444445443
No 307
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.54 E-value=0.055 Score=58.25 Aligned_cols=124 Identities=18% Similarity=0.171 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHhCC--CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHH-HHHHHH
Q 009512 157 MPTPVQMQAIPSALSG--KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVE-EQAKLL 233 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g--~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~-~~~~~~ 233 (533)
..+|+|.+.+..+-.. +.+.++.++-+|||.+.+ -++.+.+. .....+|++.||.++|..+. ..+..+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~-n~~g~~i~--------~~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLL-NWIGYSID--------QDPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHH-hhceEEEE--------eCCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 5679999999888744 578999999999999543 33333332 23345999999999999854 567666
Q ss_pred hcCCCCeEEEEEc-----CCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009512 234 GKGLPFKTALVVG-----GDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 234 ~~~~~~~~~~~~g-----g~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
.+..+.-...+.. +.+. .....+ .+..+.++.-+.- ..+.-..++++++||+|.+.
T Consensus 87 i~~sp~l~~~~~~~~~~~~~~t-~~~k~f-~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 87 IRASPVLRRKLSPSKSRDSGNT-ILYKRF-PGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHhCHHHHHHhCchhhcccCCc-hhheec-CCCEEEEEeCCCC------cccccCCcCEEEEechhhcc
Confidence 6554421111111 1111 111111 2334444321110 12234467899999999984
No 308
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=1 Score=45.79 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=20.0
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhC
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~ 312 (533)
...-+||+||+|.|.+..- ..+..+++..
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~~ 150 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRAP 150 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhhc
Confidence 3456899999999987643 5555555544
No 309
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.51 E-value=0.19 Score=49.68 Aligned_cols=65 Identities=31% Similarity=0.430 Sum_probs=40.3
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH
Q 009512 148 QNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 148 ~~l~~~g~~~p~~~Q~~~i~~i~-~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
+.|.+.|. +++-|.+.+..+. .+++++++|+||||||+. +-.++..+.. .....+++++-.+.|+
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~-------~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAK-------NDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhc-------cCCCceEEEECCchhh
Confidence 34444443 4455555555444 677999999999999984 3444444321 0124568888888777
No 310
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.49 E-value=1 Score=45.77 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=28.1
Q ss_pred CeeEEEEeccchhhhcchHHHHHHHHHhC--CCCcEEEecccCcHHH
Q 009512 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEV 328 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~~~~~~i~~i~~~~--~~~q~i~~SAT~~~~~ 328 (533)
...+|.+||+|- .|.+-.-.+..+++.+ ...-+|+.|.+.|.++
T Consensus 127 ~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 127 ESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred cCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 445799999993 3433333344455554 4667888888888654
No 311
>PRK06904 replicative DNA helicase; Validated
Probab=94.48 E-value=0.55 Score=49.57 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=56.9
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcC-
Q 009512 169 ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGG- 247 (533)
Q Consensus 169 i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg- 247 (533)
+..|.=+++.|.||.|||..+ +-+..++.. ..+..++|++.- .-..|+...+-......+.. .+..|
T Consensus 218 l~~G~LiiIaarPg~GKTafa-lnia~~~a~--------~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~--~i~~g~ 285 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFA-MNLCENAAM--------ASEKPVLVFSLE-MPAEQIMMRMLASLSRVDQT--KIRTGQ 285 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHH-HHHHHHHHH--------hcCCeEEEEecc-CCHHHHHHHHHHhhCCCCHH--HhccCC
Confidence 335556788999999999844 444443332 124457776532 33344433322221221211 11122
Q ss_pred CchHHHHH-------HHHcCCceee-----cChHHHHHHHHcCCCCCCCeeEEEEeccchhhh
Q 009512 248 DAMARQVY-------RIQQGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 248 ~~~~~~~~-------~l~~~~~Iiv-----~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~ 298 (533)
.-....+. .+.....+.| .|+..+....++.......+++||||-.+.|..
T Consensus 286 ~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 286 NLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCC
Confidence 11222222 2222344555 355666544433211122578999999987753
No 312
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.48 E-value=0.21 Score=55.32 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=26.4
Q ss_pred CeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCcHHH
Q 009512 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEV 328 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~~~~ 328 (533)
...++|+||+|++... +...++..+...++++++||-++..
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~lE~g~IiLI~aTTenp~ 149 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWVENGTITLIGATTENPY 149 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHhcCceEEEEEecCCChH
Confidence 3568999999987532 2223444445677888888765433
No 313
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.46 E-value=0.24 Score=51.11 Aligned_cols=17 Identities=29% Similarity=0.518 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHH
Q 009512 172 GKSLLVSANTGSGKTAS 188 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~ 188 (533)
..++++.|++|+|||..
T Consensus 55 ~~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTT 71 (394)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35799999999999985
No 314
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.45 E-value=0.29 Score=43.62 Aligned_cols=43 Identities=7% Similarity=0.227 Sum_probs=28.3
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCcH
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQ 326 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~~ 326 (533)
...+++|+||||.|... ....+...++.-+..-++.|.++-+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 56899999999998654 35666777777655555555555443
No 315
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.45 E-value=0.37 Score=50.86 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=63.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEc-c-cHHHHHHHHHHHHHHhcCCCCeEEEEEcCC
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT-P-TRELCIQVEEQAKLLGKGLPFKTALVVGGD 248 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~-P-tr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~ 248 (533)
.|+.+.+.|+||+|||+.....+...... ..+.++.++. . .+.-+. ++++.+...+++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~--------~~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~----- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ--------HAPRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE----- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh--------cCCCceEEEecccccccHH---HHHHHhhcccCceeEe-----
Confidence 46678889999999998654333222211 1123344433 2 333322 3344444333332211
Q ss_pred chHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc-chHHHHHHHHHhCCCCcEEEecccCc-H
Q 009512 249 AMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAISLPQILMYSATIS-Q 326 (533)
Q Consensus 249 ~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~-~~~~~i~~i~~~~~~~q~i~~SAT~~-~ 326 (533)
+.+++.+...+.. +.++++||||.+-+.... ....++..+........++.++++.. .
T Consensus 413 ----------------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~ 472 (559)
T PRK12727 413 ----------------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFS 472 (559)
T ss_pred ----------------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChh
Confidence 1233444444442 345789999999865321 11223333333234456777777764 3
Q ss_pred HHHHHHHhh
Q 009512 327 EVEKMSSSI 335 (533)
Q Consensus 327 ~~~~~~~~~ 335 (533)
++....+.+
T Consensus 473 Dl~eii~~f 481 (559)
T PRK12727 473 DLDEVVRRF 481 (559)
T ss_pred HHHHHHHHH
Confidence 444444443
No 316
>CHL00181 cbbX CbbX; Provisional
Probab=94.45 E-value=0.39 Score=47.18 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=16.5
Q ss_pred CCcEEEEccCCCchhHHHHH
Q 009512 172 GKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ll 191 (533)
+.++++.||+|+|||+.+-.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 45689999999999986543
No 317
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.40 E-value=0.46 Score=46.26 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=29.1
Q ss_pred CCeeEEEEeccchhhh-cchHHHHHHHHHhC-------CCCcEEEecccCcHHHHHHHHhhc
Q 009512 283 DDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-------SLPQILMYSATISQEVEKMSSSIS 336 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~-~~~~~~i~~i~~~~-------~~~q~i~~SAT~~~~~~~~~~~~~ 336 (533)
.++++||+|=+-++.. ......+..+.+.. +...++.++||...+....+..+.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~ 214 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN 214 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH
Confidence 3467788887776532 11223344444332 345667788887655444444443
No 318
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.39 E-value=0.1 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=19.2
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHH
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l 197 (533)
.+..++++||||||||+. +..++..+
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i 158 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIREL 158 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 456799999999999984 34444444
No 319
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=94.39 E-value=0.014 Score=35.55 Aligned_cols=28 Identities=32% Similarity=0.832 Sum_probs=22.4
Q ss_pred CCeeeeecccccccccCcCCcccchHHh
Q 009512 36 EPKCVICGRYGEYICDETDDDVCSLECK 63 (533)
Q Consensus 36 ~~~c~~c~~~~~~~~~~~d~d~~~~~~~ 63 (533)
...|.+||..+.|.|.......||++|.
T Consensus 2 ~~~C~vC~~~~kY~Cp~C~~~~CSl~C~ 29 (30)
T PF04438_consen 2 RKLCSVCGNPAKYRCPRCGARYCSLACY 29 (30)
T ss_dssp -EEETSSSSEESEE-TTT--EESSHHHH
T ss_pred cCCCccCcCCCEEECCCcCCceeCcEeE
Confidence 3579999999999999999999999995
No 320
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.3 Score=51.55 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=33.7
Q ss_pred CcccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHH
Q 009512 132 APILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 132 ~~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~ 188 (533)
-|-.+|++.|--..+...|..+ ....|--++.-.+. .-..+|+++|+|+|||+.
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLl 561 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLL 561 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHH
Confidence 3567899988766666666543 23333322222221 234589999999999984
No 321
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.30 E-value=0.27 Score=53.83 Aligned_cols=42 Identities=12% Similarity=0.331 Sum_probs=26.1
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCc
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~ 325 (533)
.+++++||||+|+|....+ +.+.++++..+..-+++|++|-+
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FILaTtd~ 159 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFILATTDP 159 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEEEECCh
Confidence 4678999999999865443 34445556544444445555533
No 322
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.27 E-value=0.66 Score=43.99 Aligned_cols=52 Identities=12% Similarity=0.077 Sum_probs=32.1
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.|.-+++.+++|+|||+.++-.+. .+.. .+.++++++.. +-..+..+.+..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~-~~~~---------~g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAY-GFLQ---------NGYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH-HHHh---------CCCcEEEEeCC-CCHHHHHHHHHHh
Confidence 567789999999999985433333 2322 34568888843 3334555555444
No 323
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.26 E-value=0.14 Score=49.82 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=29.0
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccC--CCCCceEEEEcccHHHHHHHHH
Q 009512 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQ--NQKNPLAMVLTPTRELCIQVEE 228 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~--~~~~~~~Lil~Ptr~L~~Q~~~ 228 (533)
.++++.|+||-|||... .++......... ...-|.+++-+|...-....+.
T Consensus 62 p~lLivG~snnGKT~Ii-----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII-----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CceEEecCCCCcHHHHH-----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 47999999999999842 333332222111 1123556666776655444444
No 324
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.23 E-value=0.1 Score=51.10 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=15.6
Q ss_pred CCcEEEEccCCCchhHHHHH
Q 009512 172 GKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ll 191 (533)
++.+++++|||+|||+....
T Consensus 194 ~~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34578899999999986543
No 325
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.21 E-value=0.13 Score=53.04 Aligned_cols=20 Identities=35% Similarity=0.383 Sum_probs=16.7
Q ss_pred CCCcEEEEccCCCchhHHHH
Q 009512 171 SGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~l 190 (533)
...++++.+|||+|||+.+-
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr 126 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQ 126 (412)
T ss_pred CCceEEEEcCCCCCHHHHHH
Confidence 45789999999999998653
No 326
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.21 E-value=0.56 Score=48.91 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=58.1
Q ss_pred HHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeE
Q 009512 162 QMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKT 241 (533)
Q Consensus 162 Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~ 241 (533)
--+.+.-+..|.-+++.|++|+|||..++ -+..++.. ..+..++|+.. ..-..|+...+-.... ++..
T Consensus 184 LD~~~~G~~~g~liviag~pg~GKT~~al-~ia~~~a~--------~~g~~v~~fSl-Em~~~~l~~Rl~~~~~--~v~~ 251 (421)
T TIGR03600 184 LDRLTNGLVKGDLIVIGARPSMGKTTLAL-NIAENVAL--------REGKPVLFFSL-EMSAEQLGERLLASKS--GINT 251 (421)
T ss_pred HHHHhcCCCCCceEEEEeCCCCCHHHHHH-HHHHHHHH--------hCCCcEEEEEC-CCCHHHHHHHHHHHHc--CCCH
Confidence 33344433456678999999999997544 33333321 12445777762 1222333222211111 1211
Q ss_pred EEEEcCCchHHHHHHH------HcCCceee-----cChHHHHHHHHcCCCCCCCeeEEEEeccchhhh
Q 009512 242 ALVVGGDAMARQVYRI------QQGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 242 ~~~~gg~~~~~~~~~l------~~~~~Iiv-----~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~ 298 (533)
..+..|.....++.++ ..+..+.| .|+..+....++-......+++||||=.+.|..
T Consensus 252 ~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~ 319 (421)
T TIGR03600 252 GNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAP 319 (421)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCC
Confidence 1111222222222211 12234554 244555444442211122578999999988753
No 327
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.20 E-value=0.21 Score=50.88 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=17.7
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHH
Q 009512 173 KSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp~l~~l 197 (533)
.++++.||+|+|||... -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999753 3344444
No 328
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.19 E-value=0.32 Score=49.11 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=16.8
Q ss_pred CCcEEEEccCCCchhHHHHHHH
Q 009512 172 GKSLLVSANTGSGKTASFLVPV 193 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~ 193 (533)
++-+++.+|+|+|||+...-.+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4567899999999998654433
No 329
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.19 E-value=0.7 Score=47.09 Aligned_cols=91 Identities=15% Similarity=0.273 Sum_probs=51.1
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCch
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.-+++.+++|+|||+..+. +...+.. .+.+++|+.-. +-..|+...+.++.-. .....+...
T Consensus 81 ~GslvLI~G~pG~GKStLllq-~a~~~a~---------~g~~VlYvs~E-Es~~qi~~Ra~rlg~~--~~~l~l~~e--- 144 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQ-VAARLAK---------RGGKVLYVSGE-ESPEQIKLRADRLGIS--TENLYLLAE--- 144 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHH-HHHHHHh---------cCCeEEEEECC-cCHHHHHHHHHHcCCC--cccEEEEcc---
Confidence 456689999999999985333 3223221 24568888754 4446666666555321 111111111
Q ss_pred HHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009512 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 251 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
...+.+...+.. ...++||||+++.+.
T Consensus 145 ---------------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 ---------------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred ---------------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 122334444432 246799999999875
No 330
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.07 E-value=0.24 Score=48.05 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHh----CCC-cEEEEccCCCchhHHH
Q 009512 157 MPTPVQMQAIPSAL----SGK-SLLVSANTGSGKTASF 189 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~----~g~-~vli~a~TGsGKT~~~ 189 (533)
.+++.+.+++..+. .+. .+++.|++|+|||+..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 34566666666543 333 5889999999999853
No 331
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.05 E-value=0.48 Score=45.14 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=26.2
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEc
Q 009512 170 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT 217 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~ 217 (533)
..|.-++|.|++|+|||...+ -++.++.. ..+..++|++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~-~~~~~~~~--------~~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFAL-NIAENIAK--------KQGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHH-HHHHHHHH--------hCCCceEEEe
Confidence 356678999999999997544 33333332 2256688888
No 332
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.02 E-value=0.33 Score=51.14 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.4
Q ss_pred EEEEccCCCchhHHHHH
Q 009512 175 LLVSANTGSGKTASFLV 191 (533)
Q Consensus 175 vli~a~TGsGKT~~~ll 191 (533)
+|++||+|+|||+.+.+
T Consensus 39 ~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 39 YIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68999999999986544
No 333
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=93.99 E-value=0.33 Score=46.95 Aligned_cols=113 Identities=18% Similarity=0.270 Sum_probs=57.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEccc---HHHHHHHHHHHHHHhcCCCCeEEEEEcC
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPT---RELCIQVEEQAKLLGKGLPFKTALVVGG 247 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Pt---r~L~~Q~~~~~~~~~~~~~~~~~~~~gg 247 (533)
.|.=+++.|.||.|||..++-.+...+. ..+..++|++.- .+++..+. .... ..+. ..+..|
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~---------~~~~~vly~SlEm~~~~l~~R~l---a~~s-~v~~--~~i~~g 82 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAAL---------NGGYPVLYFSLEMSEEELAARLL---ARLS-GVPY--NKIRSG 82 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHH---------TTSSEEEEEESSS-HHHHHHHHH---HHHH-TSTH--HHHHCC
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHH---------hcCCeEEEEcCCCCHHHHHHHHH---HHhh-cchh--hhhhcc
Confidence 4455788999999999855444444333 224668888852 33333222 2221 1111 111112
Q ss_pred CchHHHHHHH------HcCCceee-c----ChHHHHHHHHcCCCCCCCeeEEEEeccchhhh
Q 009512 248 DAMARQVYRI------QQGVELIV-G----TPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 248 ~~~~~~~~~l------~~~~~Iiv-~----Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~ 298 (533)
........++ .....+.| . |++.+.+.+.........+++||||=.|.+..
T Consensus 83 ~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 83 DLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp GCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred ccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 2222222222 12233443 2 55566665554322236789999999998765
No 334
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.97 E-value=0.15 Score=46.29 Aligned_cols=46 Identities=17% Similarity=0.326 Sum_probs=26.9
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH
Q 009512 170 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV 226 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~ 226 (533)
..++++++.|++|+|||..+.. +...+.. .+..++++ +..+|...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~a-i~~~~~~---------~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVA-IANEAIR---------KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHH-HHHHHHH---------TT--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHH-HHHHhcc---------CCcceeEe-ecCceeccc
Confidence 3678999999999999986433 3333432 24446664 555665543
No 335
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.95 E-value=1.3 Score=45.83 Aligned_cols=59 Identities=15% Similarity=0.041 Sum_probs=31.5
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEc--ccHHHHHHHHHHHHHHhcCCCCeEEEEE
Q 009512 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT--PTRELCIQVEEQAKLLGKGLPFKTALVV 245 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~--Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~ 245 (533)
-+++++++|+|||+...-.+. ++. ..+.++++++ +.|.-+. ++++.+....++.+....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~--~l~--------~~G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~ 162 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY--YYQ--------RKGFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSY 162 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHH--------HCCCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeec
Confidence 367899999999986543332 222 1244555554 3454333 344444444455444333
No 336
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.94 E-value=0.25 Score=53.28 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=16.0
Q ss_pred cEEEEccCCCchhHHHHHHH
Q 009512 174 SLLVSANTGSGKTASFLVPV 193 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~ 193 (533)
.+|+.+|.|+|||.++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47889999999999765443
No 337
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.91 E-value=0.26 Score=54.25 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=65.4
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHh---hcCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-ccccCCCCCccEEE
Q 009512 380 FTPPAVVYVGSRLGADLLSNAISV---TTGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATGI-LGRGVELLGVRQVI 455 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~---~~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~-~~~Gldi~~v~~VI 455 (533)
.+.++++.++++.-|...++.+++ ..++.+..+||+++..+|..+++...+|+.+|+|+|.. +...+.+.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 456899999999999888877763 23689999999999999999999999999999999985 44567778888887
Q ss_pred E
Q 009512 456 I 456 (533)
Q Consensus 456 ~ 456 (533)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 6
No 338
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.84 E-value=0.4 Score=49.55 Aligned_cols=41 Identities=15% Similarity=0.336 Sum_probs=24.4
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
....+++|+||+|+|.... ...+...++..+..-++.+.++
T Consensus 125 ~~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred cCCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCeEEEEEeC
Confidence 4567899999999986533 2334444444444444445444
No 339
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.83 E-value=0.2 Score=53.38 Aligned_cols=40 Identities=13% Similarity=0.362 Sum_probs=24.2
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
.+++++|+||+|+|....+ ..+...++..+..-.+.|.+|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlatt 157 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILATT 157 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEEC
Confidence 4678999999998865443 344455555443333344334
No 340
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.82 E-value=0.24 Score=50.46 Aligned_cols=40 Identities=13% Similarity=0.371 Sum_probs=22.5
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
...+++|+||+|.|....+. .+...+...+..-.+.+++|
T Consensus 118 ~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred CCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEEcC
Confidence 45789999999998654332 33344444333323344444
No 341
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.73 E-value=0.51 Score=48.51 Aligned_cols=45 Identities=13% Similarity=0.327 Sum_probs=29.3
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCcHHH
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQEV 328 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~~~~ 328 (533)
...+++||||+|+|.... ...+...++.-+...++++++|-+..+
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~~~~~l 160 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAPSPEDV 160 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEECChHHC
Confidence 467899999999986543 345555666555555566666655443
No 342
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.68 E-value=0.6 Score=46.90 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHhC--CC---cEEEEccCCCchhHHHHHH
Q 009512 158 PTPVQMQAIPSALS--GK---SLLVSANTGSGKTASFLVP 192 (533)
Q Consensus 158 p~~~Q~~~i~~i~~--g~---~vli~a~TGsGKT~~~llp 192 (533)
.+|||...+..+.. ++ -.|+.||.|.||+..+...
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~ 41 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHL 41 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHH
Confidence 36889988888763 32 4789999999999865443
No 343
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.67 E-value=0.11 Score=53.81 Aligned_cols=39 Identities=33% Similarity=0.528 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHhCCCc--EEEEccCCCchhHHHHHHHHHHHH
Q 009512 159 TPVQMQAIPSALSGKS--LLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 159 ~~~Q~~~i~~i~~g~~--vli~a~TGsGKT~~~llp~l~~l~ 198 (533)
++.|.+.+..++.... +|+.||||||||+. +..++..+.
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln 283 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELN 283 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhc
Confidence 6788888888775544 67899999999986 666666654
No 344
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.62 E-value=0.94 Score=40.06 Aligned_cols=52 Identities=15% Similarity=0.375 Sum_probs=35.7
Q ss_pred CCCeeEEEEeccchhhhcch--HHHHHHHHHhCCCC-cEEEecccCcHHHHHHHH
Q 009512 282 LDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLP-QILMYSATISQEVEKMSS 333 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~--~~~i~~i~~~~~~~-q~i~~SAT~~~~~~~~~~ 333 (533)
...+++||+||+=.....++ ...+..+++..+.. -+|+.+-.+|+++.+++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998876663 45666777766554 455555667777766543
No 345
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.62 E-value=0.78 Score=45.01 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=16.1
Q ss_pred CCcEEEEccCCCchhHHHH
Q 009512 172 GKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~l 190 (533)
+.++++.||+|+|||+++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999998653
No 346
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.60 E-value=0.37 Score=53.89 Aligned_cols=43 Identities=12% Similarity=0.263 Sum_probs=23.9
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCcH
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQ 326 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~~ 326 (533)
...+++||||+|+|.... ...+.++++..+..-++++..|-+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILaTTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLATTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEECCCch
Confidence 467899999999985432 3444445554333323333344333
No 347
>PRK06620 hypothetical protein; Validated
Probab=93.59 E-value=0.15 Score=47.77 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=14.0
Q ss_pred CcEEEEccCCCchhHH
Q 009512 173 KSLLVSANTGSGKTAS 188 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~ 188 (533)
+.+++.||+|+|||..
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999974
No 348
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.56 E-value=0.84 Score=45.68 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHh--CCC---cEEEEccCCCchhHHHHHH
Q 009512 158 PTPVQMQAIPSAL--SGK---SLLVSANTGSGKTASFLVP 192 (533)
Q Consensus 158 p~~~Q~~~i~~i~--~g~---~vli~a~TGsGKT~~~llp 192 (533)
.+|||...|..+. .+| ..|+.||.|.|||..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~ 41 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFA 41 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHH
Confidence 3689999998877 333 4789999999999865443
No 349
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.55 E-value=0.11 Score=52.10 Aligned_cols=44 Identities=27% Similarity=0.329 Sum_probs=29.9
Q ss_pred HHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH
Q 009512 168 SALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 168 ~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
.+..+.+++++|+||||||+. +-.++..+ ....+++.+-.+.||
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i----------~~~~rivtiEd~~El 201 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAI----------PPQERLITIEDTLEL 201 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHccc----------CCCCCEEEECCCccc
Confidence 344788999999999999983 33333322 123457777787777
No 350
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.54 E-value=0.23 Score=53.64 Aligned_cols=43 Identities=14% Similarity=0.333 Sum_probs=23.9
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCc
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~ 325 (533)
....+++||||+|+|....+. .+...++..+..-++.+.+|-+
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~n-aLLKtLEepp~~~ifIlatt~~ 159 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFN-ALLKTLEEPPAHVIFILATTEP 159 (559)
T ss_pred cCCeEEEEEECcccCCHHHHH-HHHHHhcCCCCCeEEEEEeCCh
Confidence 356889999999988654332 3333344433333444444433
No 351
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.52 E-value=0.24 Score=49.72 Aligned_cols=43 Identities=21% Similarity=0.330 Sum_probs=28.8
Q ss_pred HhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH
Q 009512 169 ALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 169 i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
+..+++++++|+||||||+. +-.++..+ ....+++.+=-+.||
T Consensus 157 v~~~~nili~G~tgSGKTTl-l~aL~~~i----------p~~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTF-TNAALREI----------PAIERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHH-HHHHHhhC----------CCCCeEEEecCCCcc
Confidence 34788999999999999983 44444333 123456666566665
No 352
>PHA00729 NTP-binding motif containing protein
Probab=93.48 E-value=0.74 Score=43.18 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=14.7
Q ss_pred cEEEEccCCCchhHHHH
Q 009512 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
++++.|++|+|||..+.
T Consensus 19 nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 19 SAVIFGKQGSGKTTYAL 35 (226)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 79999999999997543
No 353
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.43 E-value=0.59 Score=50.73 Aligned_cols=41 Identities=10% Similarity=0.286 Sum_probs=24.0
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
....++|||||+|.|.... ...+...++..+..-++.|.+|
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEeC
Confidence 4567899999999986543 3344444555433333334334
No 354
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.43 E-value=0.48 Score=51.64 Aligned_cols=40 Identities=13% Similarity=0.373 Sum_probs=23.2
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
...+++||||+|.|....+ ..+...+...+..-.++|.+|
T Consensus 118 gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaTt 157 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILATT 157 (709)
T ss_pred CCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEeC
Confidence 4678999999998764333 344455554433333333434
No 355
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.42 E-value=0.13 Score=52.17 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=30.4
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHH
Q 009512 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~ 198 (533)
.+.+++++++++.+++.+. ..+..+++++|||||||+. +..++.++.
T Consensus 128 ~~~~l~~lgl~~~~~~~l~------------------~~~GlilI~G~TGSGKTT~-l~al~~~i~ 174 (372)
T TIGR02525 128 DIPDLKQMGIEPDLFNSLL------------------PAAGLGLICGETGSGKSTL-AASIYQHCG 174 (372)
T ss_pred cCCCHHHcCCCHHHHHHHH------------------hcCCEEEEECCCCCCHHHH-HHHHHHHHH
Confidence 3346677777765544321 1344689999999999984 455556554
No 356
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.41 E-value=0.92 Score=42.84 Aligned_cols=52 Identities=21% Similarity=0.161 Sum_probs=31.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.|..+++.+++|+|||..++..+...+. .+..++++.- .+...++...++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~----------~g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR----------DGDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh----------cCCeEEEEEc-cCCHHHHHHHHHHh
Confidence 5678999999999999854433333221 2445777764 33445555544444
No 357
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.41 E-value=0.7 Score=49.98 Aligned_cols=39 Identities=10% Similarity=0.371 Sum_probs=22.7
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCC-CcEEEec
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISL-PQILMYS 321 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~-~q~i~~S 321 (533)
..+++++||||+|+|....+. .+.+.++.-+. ..+|+.|
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEe
Confidence 346889999999998654433 33344444332 3344443
No 358
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.39 E-value=0.94 Score=45.95 Aligned_cols=140 Identities=11% Similarity=0.036 Sum_probs=60.9
Q ss_pred EEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCC-ceEEEEcccHHHHHH-H---HHHHHHHhcCCCCeEEEE--EcCC
Q 009512 176 LVSANTGSGKTASFLVPVISQCANIRLHHSQNQKN-PLAMVLTPTRELCIQ-V---EEQAKLLGKGLPFKTALV--VGGD 248 (533)
Q Consensus 176 li~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~-~~~Lil~Ptr~L~~Q-~---~~~~~~~~~~~~~~~~~~--~gg~ 248 (533)
++.++.|+|||....+.++.++.. ..+ ..++++ ||..-+.. + ...+..+... .+..... ....
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~--------~~~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 70 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALT--------RPPGRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRK 70 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHS--------SSS--EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSE
T ss_pred CCcCCccccHHHHHHHHHHHHHhh--------CCCCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCc
Confidence 578899999999887777777664 222 345555 65544444 2 2233333333 1222111 1111
Q ss_pred chHHHHHHHHcCCceeecChHHH--HHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccC--
Q 009512 249 AMARQVYRIQQGVELIVGTPGRL--IDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI-- 324 (533)
Q Consensus 249 ~~~~~~~~l~~~~~Iiv~Tp~~l--~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~-- 324 (533)
... .++..|.+.+-+.- ..-+. -..++++++||+-.+.+..+...+............+.+|.|.
T Consensus 71 ~~~------~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~p~~~ 139 (384)
T PF03237_consen 71 IIL------PNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGGSIRMYISTPPNP 139 (384)
T ss_dssp EEE------TTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT--EEEEEE---S
T ss_pred EEe------cCceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccCcceEEeecCCCC
Confidence 000 34556666553211 11111 1467799999988776554444444444433333322445443
Q ss_pred cHHHHHHHHhhc
Q 009512 325 SQEVEKMSSSIS 336 (533)
Q Consensus 325 ~~~~~~~~~~~~ 336 (533)
...+..+.....
T Consensus 140 ~~~~~~~~~~~~ 151 (384)
T PF03237_consen 140 GGWFYEIFQRNL 151 (384)
T ss_dssp SSHHHHHHHHHH
T ss_pred CCceeeeeehhh
Confidence 233444444333
No 359
>PRK05973 replicative DNA helicase; Provisional
Probab=93.38 E-value=0.19 Score=47.66 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009512 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.++|.. +...-+..|.-++|.|++|+|||+..+-.+...+. .+.+++|++-- +-..|+.+.+..+
T Consensus 50 ~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~----------~Ge~vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 50 ATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK----------SGRTGVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred CCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh----------cCCeEEEEEEe-CCHHHHHHHHHHc
Confidence 566633 34445557778999999999999865444443322 25568887643 3345566666555
No 360
>PRK07004 replicative DNA helicase; Provisional
Probab=93.35 E-value=0.49 Score=49.78 Aligned_cols=112 Identities=15% Similarity=0.213 Sum_probs=53.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEc---ccHHHHHHHHHHHHHHhcCCCCeEEEEEcC
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT---PTRELCIQVEEQAKLLGKGLPFKTALVVGG 247 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~---Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg 247 (533)
.|.-+++.|.+|+|||..+ +-+..++.. ..+..++|.+ +..+|+..+ +...+ ++....+..|
T Consensus 212 ~g~liviaarpg~GKT~~a-l~ia~~~a~--------~~~~~v~~fSlEM~~~ql~~R~---la~~~---~v~~~~i~~g 276 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFS-MNIGEYVAV--------EYGLPVAVFSMEMPGTQLAMRM---LGSVG---RLDQHRMRTG 276 (460)
T ss_pred CCceEEEEeCCCCCccHHH-HHHHHHHHH--------HcCCeEEEEeCCCCHHHHHHHH---HHhhc---CCCHHHHhcC
Confidence 4566888999999999744 433333321 1244566665 333333322 11111 1111111112
Q ss_pred CchHHHHHHH------HcCCceee-----cChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009512 248 DAMARQVYRI------QQGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 248 ~~~~~~~~~l------~~~~~Iiv-----~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
.....++.++ ..+..+.| .|+..+....++.......+++||||=.+.|.
T Consensus 277 ~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 277 RLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 2222222221 12345555 34545544433321112347899999999875
No 361
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.34 E-value=0.5 Score=50.86 Aligned_cols=43 Identities=9% Similarity=0.273 Sum_probs=24.8
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCcH
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQ 326 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~~ 326 (533)
...+++|+||||.|.... ...+...++..+..-++.+.+|-+.
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEEECCChH
Confidence 356789999999885432 3344455555444444444444443
No 362
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=3.1 Score=40.30 Aligned_cols=97 Identities=18% Similarity=0.294 Sum_probs=52.5
Q ss_pred HHHHHhhcCceEecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCc-----EEEEccCCCchhHH
Q 009512 114 TDSLRKRLEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKS-----LLVSANTGSGKTAS 188 (533)
Q Consensus 114 ~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~-----vli~a~TGsGKT~~ 188 (533)
-..|+..+.-.+ ...+|-..|++.-=-+.-.++|+.+=+ -|+ -+|.+++|+. +|+.+|+|+||++.
T Consensus 112 ~kKLr~~L~sAI---v~EKPNVkWsDVAGLE~AKeALKEAVI---LPI---KFPqlFtGkR~PwrgiLLyGPPGTGKSYL 182 (439)
T KOG0739|consen 112 KKKLRSALNSAI---VREKPNVKWSDVAGLEGAKEALKEAVI---LPI---KFPQLFTGKRKPWRGILLYGPPGTGKSYL 182 (439)
T ss_pred HHHHHHHhhhhh---hccCCCCchhhhccchhHHHHHHhhee---ecc---cchhhhcCCCCcceeEEEeCCCCCcHHHH
Confidence 445555554211 123456677775322333344443211 010 1356666654 89999999999964
Q ss_pred HHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009512 189 FLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 189 ~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
+ -+... ..+ ...+-+.+..|+..|..+..++
T Consensus 183 A--KAVAT-----------EAn-STFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 183 A--KAVAT-----------EAN-STFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred H--HHHHh-----------hcC-CceEEeehHHHHHHHhccHHHH
Confidence 3 22221 122 4778888888877766555554
No 363
>PRK08006 replicative DNA helicase; Provisional
Probab=93.32 E-value=1 Score=47.49 Aligned_cols=115 Identities=12% Similarity=0.099 Sum_probs=54.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCch
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.-++|.|.+|.|||..++ -+..++.. ..+..++|...- .-..|+...+-....... ...+..|.-.
T Consensus 223 ~G~LiiIaarPgmGKTafal-nia~~~a~--------~~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~--~~~i~~~~l~ 290 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAM-NLCENAAM--------LQDKPVLIFSLE-MPGEQIMMRMLASLSRVD--QTRIRTGQLD 290 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHH--------hcCCeEEEEecc-CCHHHHHHHHHHHhcCCC--HHHhhcCCCC
Confidence 45557889999999997544 33333321 124457776532 222333322221111111 1111122222
Q ss_pred HHHHHH-------HHcCCceee-----cChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009512 251 ARQVYR-------IQQGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 251 ~~~~~~-------l~~~~~Iiv-----~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
..++.+ +.....+.| .|+..+....++.......+++||||=.|.|.
T Consensus 291 ~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 291 DEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 222222 213344554 25555554443321112357899999999874
No 364
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.27 E-value=0.35 Score=47.82 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=22.9
Q ss_pred CeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccC
Q 009512 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~ 324 (533)
+-.++.+||+|++.. .|-..++-+..+--++++.||-
T Consensus 222 rkTilFiDEiHRFNk----sQQD~fLP~VE~G~I~lIGATT 258 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNK----SQQDTFLPHVENGDITLIGATT 258 (554)
T ss_pred ceeEEEeHHhhhhhh----hhhhcccceeccCceEEEeccc
Confidence 345799999999742 2223333444556677777774
No 365
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.26 E-value=0.45 Score=50.55 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=14.3
Q ss_pred EEEEccCCCchhHHHHH
Q 009512 175 LLVSANTGSGKTASFLV 191 (533)
Q Consensus 175 vli~a~TGsGKT~~~ll 191 (533)
+|+.||.|+|||+++.+
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 49999999999987543
No 366
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.25 E-value=0.13 Score=55.35 Aligned_cols=82 Identities=23% Similarity=0.376 Sum_probs=63.3
Q ss_pred HHHHhcCCCcEEEEeccccccCCCCCccEEE--------EcCCCCCHhHHHHhhcccCCCCCc-cEEEEEe-c--CcCHH
Q 009512 425 MRSFLVGEVPVIVATGILGRGVELLGVRQVI--------IFDMPNSIKEYVHQIGRASQMGDE-GTAIVFV-N--EENKN 492 (533)
Q Consensus 425 ~~~f~~g~~~VLvaT~~~~~Gldi~~v~~VI--------~~~~p~s~~~y~qriGR~gR~g~~-g~~~~l~-~--~~~~~ 492 (533)
-+.|..|+-.|-|-...++.||-+..-+-|+ -+.+|||.+.-+|+.||+.|..+. +--|+|+ + ..+++
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 4578899999988889999999987655444 477999999999999999998763 3333333 2 34788
Q ss_pred HHHHHHHHHHhcCC
Q 009512 493 LFQELVDILKSSGA 506 (533)
Q Consensus 493 ~~~~l~~~l~~~~~ 506 (533)
++.-+.+.|+..|.
T Consensus 930 FAS~VAKRLESLGA 943 (1300)
T KOG1513|consen 930 FASIVAKRLESLGA 943 (1300)
T ss_pred HHHHHHHHHHhhcc
Confidence 88888888887654
No 367
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.23 E-value=0.87 Score=47.72 Aligned_cols=113 Identities=13% Similarity=0.110 Sum_probs=54.1
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCch
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.-++|.|++|+|||.. .+-++.++.. ..+..++|++.- .-..|+...+-......+... +..|.-.
T Consensus 194 ~G~l~vi~g~pg~GKT~~-~l~~a~~~a~--------~~g~~vl~~SlE-m~~~~i~~R~~~~~~~v~~~~--~~~g~l~ 261 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAF-ALNIAENAAI--------KEGKPVAFFSLE-MSAEQLAMRMLSSESRVDSQK--LRTGKLS 261 (434)
T ss_pred CCeEEEEEeCCCCChHHH-HHHHHHHHHH--------hCCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHH--hccCCCC
Confidence 455688999999999974 4444444332 124457777632 222333333322222222111 1122211
Q ss_pred HHHH-------HHHHcCCceee-----cChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009512 251 ARQV-------YRIQQGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 251 ~~~~-------~~l~~~~~Iiv-----~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
..++ ..+.+ ..+.| .|+..+...+.+.... ..+++||||=.+.|.
T Consensus 262 ~~~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 262 DEDWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 2222 12222 34444 2455555444332111 247899999998774
No 368
>PRK04195 replication factor C large subunit; Provisional
Probab=93.22 E-value=0.66 Score=49.31 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=15.4
Q ss_pred CCcEEEEccCCCchhHHH
Q 009512 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
.+.+|+.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999854
No 369
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.18 E-value=0.28 Score=50.58 Aligned_cols=159 Identities=17% Similarity=0.204 Sum_probs=76.9
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchH
Q 009512 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMA 251 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 251 (533)
|+-+.+.|+||+|||+.....+-..+.. .......++.+.+.-.+ ..+++..++..+++....
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~-------~~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~-------- 253 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIR-------HGADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRS-------- 253 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCCeEEEEecCCcchh--HHHHHHHHHHHcCCceec--------
Confidence 4568899999999998654333222221 01123355666553322 233344444444443322
Q ss_pred HHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhh-cchHHHHHHHHHhC-CCCcEEEecccC-cHHH
Q 009512 252 RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQ-RGFRDQVMQIFRAI-SLPQILMYSATI-SQEV 328 (533)
Q Consensus 252 ~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~-~~~~~~i~~i~~~~-~~~q~i~~SAT~-~~~~ 328 (533)
+.++..+...+. .+.+.+++++|.+-+.-. .....++..+.... +...++.+|||. ...+
T Consensus 254 -------------v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~ 316 (420)
T PRK14721 254 -------------IKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL 316 (420)
T ss_pred -------------CCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH
Confidence 222333322222 245667899998754321 11223333332211 234567889996 4455
Q ss_pred HHHHHhhcCCeEEEEeCCCCCCCccceEEEEEecchhhHHHHHHHHHhc
Q 009512 329 EKMSSSISKDIVVVSVGKPNMPNKAVKQLAIWVESNKKKQKLFDILMSK 377 (533)
Q Consensus 329 ~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~ 377 (533)
.++...+..-.+ -.-++..+++..+.-.++.++...
T Consensus 317 ~~~~~~f~~~~~-------------~~~I~TKlDEt~~~G~~l~~~~~~ 352 (420)
T PRK14721 317 DEVISAYQGHGI-------------HGCIITKVDEAASLGIALDAVIRR 352 (420)
T ss_pred HHHHHHhcCCCC-------------CEEEEEeeeCCCCccHHHHHHHHh
Confidence 555555432110 122333455555666666666554
No 370
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.15 E-value=0.78 Score=41.76 Aligned_cols=145 Identities=15% Similarity=0.170 Sum_probs=74.6
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCc
Q 009512 170 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDA 249 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~ 249 (533)
+....+++..++|.|||.+++-.+++.+- .+.+++++.=.+--.. ..+...+....++.... .|..
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g----------~G~~V~ivQFlKg~~~--~GE~~~l~~l~~v~~~~--~g~~ 85 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVG----------HGKKVGVVQFIKGAWS--TGERNLLEFGGGVEFHV--MGTG 85 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHH----------CCCeEEEEEEecCCCc--cCHHHHHhcCCCcEEEE--CCCC
Confidence 35668999999999999988777776553 4667887763332100 11222222111222221 1211
Q ss_pred hHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcch--HHHHHHHHHhCCCCc-EEEecccCcH
Q 009512 250 MARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLPQ-ILMYSATISQ 326 (533)
Q Consensus 250 ~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~--~~~i~~i~~~~~~~q-~i~~SAT~~~ 326 (533)
..-. ....+--.......+..... .+.-..+++||+||+=..++.++ ...+..++...+... +|+..-..|+
T Consensus 86 ~~~~----~~~~~e~~~~~~~~~~~a~~-~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~ 160 (191)
T PRK05986 86 FTWE----TQDRERDIAAAREGWEEAKR-MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPR 160 (191)
T ss_pred Cccc----CCCcHHHHHHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 0000 00000000111112222211 12235689999999998888773 466667777665554 4554455677
Q ss_pred HHHHHHH
Q 009512 327 EVEKMSS 333 (533)
Q Consensus 327 ~~~~~~~ 333 (533)
++.+++.
T Consensus 161 ~Lie~AD 167 (191)
T PRK05986 161 ELIEAAD 167 (191)
T ss_pred HHHHhCc
Confidence 6666554
No 371
>PRK05748 replicative DNA helicase; Provisional
Probab=93.11 E-value=0.9 Score=47.79 Aligned_cols=114 Identities=10% Similarity=0.096 Sum_probs=54.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHH-HHHhcCCCCeEEEEEcCCc
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQA-KLLGKGLPFKTALVVGGDA 249 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~-~~~~~~~~~~~~~~~gg~~ 249 (533)
.|.-++|.|.||+|||.. .+-++.++.. ..+..++|++. ..-..|+...+ ...+ ..+. ..+..|.-
T Consensus 202 ~G~livIaarpg~GKT~~-al~ia~~~a~--------~~g~~v~~fSl-Ems~~~l~~R~l~~~~-~v~~--~~i~~~~l 268 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAF-ALNIAQNVAT--------KTDKNVAIFSL-EMGAESLVMRMLCAEG-NIDA--QRLRTGQL 268 (448)
T ss_pred CCceEEEEeCCCCCchHH-HHHHHHHHHH--------hCCCeEEEEeC-CCCHHHHHHHHHHHhc-CCCH--HHhhcCCC
Confidence 456689999999999974 4444444332 12445666653 23334433333 2222 1111 11112222
Q ss_pred hHHHHHHH------HcCCceee-----cChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009512 250 MARQVYRI------QQGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 250 ~~~~~~~l------~~~~~Iiv-----~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
...++..+ ..+..+.| .|+..+...+.+.......+++||||=.+.|.
T Consensus 269 ~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 269 TDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred CHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 22222211 12234544 24555554443321111257899999999874
No 372
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.10 E-value=1.2 Score=44.09 Aligned_cols=49 Identities=12% Similarity=0.191 Sum_probs=27.1
Q ss_pred CCCeeEEEEeccchhhhcchH--HHHHHHHH-hC-CCCcEEEecccCcHHHHH
Q 009512 282 LDDIRMFVLDEVDCMLQRGFR--DQVMQIFR-AI-SLPQILMYSATISQEVEK 330 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~--~~i~~i~~-~~-~~~q~i~~SAT~~~~~~~ 330 (533)
+.++++||+||...-.-..+. ..+..|+. ++ ....+++.|.-.+.++..
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~ 267 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEH 267 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH
Confidence 356789999999753222222 23444544 32 455666666554444443
No 373
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.03 E-value=0.27 Score=49.68 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=26.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
.+..++++||||||||+. +..++..+.. ..+.+++.+--..|+
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~~--------~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYINK--------NAAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhCc--------CCCCEEEEEcCChhh
Confidence 456789999999999985 3344443321 223456666555454
No 374
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=93.01 E-value=1.1 Score=42.46 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=32.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.|.-+++.|++|+|||..+...+...+. .+.+++|+.--.. ..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~----------~g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALK----------QGKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHh----------CCCEEEEEEcCCC-HHHHHHHHHHC
Confidence 4566899999999999865444433322 3566777775433 34555555555
No 375
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.99 E-value=0.99 Score=48.99 Aligned_cols=41 Identities=12% Similarity=0.322 Sum_probs=25.3
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
..+.+++||||+|+|.... ...+...++..+..-++.|.+|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEeC
Confidence 3568899999999886543 3445555555444334444445
No 376
>PRK08840 replicative DNA helicase; Provisional
Probab=92.97 E-value=1.3 Score=46.56 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHH
Q 009512 155 YDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 155 ~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~l 190 (533)
+.+..+---..+.-+..|.-+++.|.||.|||..++
T Consensus 200 i~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafal 235 (464)
T PRK08840 200 VDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAM 235 (464)
T ss_pred cCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHH
Confidence 333333333444444456668889999999997543
No 377
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.96 E-value=0.52 Score=50.41 Aligned_cols=40 Identities=10% Similarity=0.269 Sum_probs=23.6
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
.+.+++||||+|+|.... ...+...++..+..-++.+..|
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEEC
Confidence 467899999999986543 3344455555433333333334
No 378
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.92 E-value=0.53 Score=46.97 Aligned_cols=41 Identities=7% Similarity=0.192 Sum_probs=26.2
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
....++||+||||.|... -...+...+..-+....+.+++.
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 357889999999998653 34555555555444444555544
No 379
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=92.90 E-value=2.2 Score=47.95 Aligned_cols=21 Identities=29% Similarity=0.199 Sum_probs=16.9
Q ss_pred CCcEEEEccCCCchhHHHHHH
Q 009512 172 GKSLLVSANTGSGKTASFLVP 192 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp 192 (533)
..++++.||+|+|||..+...
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~l 223 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGL 223 (731)
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 458999999999999865433
No 380
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.89 E-value=0.99 Score=49.16 Aligned_cols=41 Identities=15% Similarity=0.354 Sum_probs=24.0
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
....++|||||+|.|.... ...+...+...+..-++.+.++
T Consensus 118 ~~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~tv~Il~t~ 158 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHAIFILATT 158 (585)
T ss_pred cCCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCeEEEEEeC
Confidence 3567899999999886533 2334444444343444444444
No 381
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=92.88 E-value=0.17 Score=55.08 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=21.1
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhC
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~ 312 (533)
+++-.++|+|||..-+|...+..+...+..+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l 511 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKL 511 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHH
Confidence 3445678888888877776666666666544
No 382
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.80 E-value=1 Score=42.98 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=30.8
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhcc--cCCCCCceEEEEc---ccHHHHHHHHH
Q 009512 174 SLLVSANTGSGKTASFLVPVISQCANIRLHH--SQNQKNPLAMVLT---PTRELCIQVEE 228 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~~~~~~~--~~~~~~~~~Lil~---Ptr~L~~Q~~~ 228 (533)
-.++.|+.|+|||...+-.++.......+.. .....+.++||+. |..++...+..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~ 62 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEA 62 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHH
Confidence 3689999999999866554444332221111 1112456788888 44444333333
No 383
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.76 E-value=0.92 Score=45.12 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHH
Q 009512 157 MPTPVQMQAIPSAL----SGK---SLLVSANTGSGKTASFLV 191 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~----~g~---~vli~a~TGsGKT~~~ll 191 (533)
.++|||...+..+. .++ -.++.||.|.||+..+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~ 44 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL 44 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 35688888877765 444 478999999999975443
No 384
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.74 E-value=0.52 Score=53.81 Aligned_cols=76 Identities=18% Similarity=0.260 Sum_probs=64.6
Q ss_pred CCCEEEEEcCcccHHHHHHHHHhh---cCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cccccCCCCCccEEEE
Q 009512 381 TPPAVVYVGSRLGADLLSNAISVT---TGMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGRGVELLGVRQVII 456 (533)
Q Consensus 381 ~~~~lIF~~s~~~~~~l~~~l~~~---~~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~-~~~~Gldi~~v~~VI~ 456 (533)
+.+++|.++++.-|...++.+++. .++.+..++|..+..++..+++.+.+|+.+|+|+|. .+...+.+.++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 468999999999999988877633 356788899999999999999999999999999998 4456678888888886
No 385
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.73 E-value=0.6 Score=50.44 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=24.5
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccC
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~ 324 (533)
.+.+++||||+|+|.... ...+...++..+..-++.|.+|-
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~tte 157 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFATTE 157 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEeCC
Confidence 567899999999986543 33444555554433333333343
No 386
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.72 E-value=1.4 Score=43.87 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=21.5
Q ss_pred CeeEEEEeccchhhhcchHHHHHHHHHhCCC-CcEEEe
Q 009512 284 DIRMFVLDEVDCMLQRGFRDQVMQIFRAISL-PQILMY 320 (533)
Q Consensus 284 ~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~-~q~i~~ 320 (533)
..++||+||+|.+.... ...+..++...+. ..+|+.
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~ 138 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILS 138 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEE
Confidence 46799999999885432 3445555555433 334443
No 387
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.71 E-value=0.43 Score=45.74 Aligned_cols=40 Identities=18% Similarity=0.415 Sum_probs=23.9
Q ss_pred ChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHh
Q 009512 267 TPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRA 311 (533)
Q Consensus 267 Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~ 311 (533)
-|+-|..++. ++..=+++.+||+|++.- ..+..+...++-
T Consensus 90 K~gDlaaiLt----~Le~~DVLFIDEIHrl~~-~vEE~LYpaMED 129 (332)
T COG2255 90 KPGDLAAILT----NLEEGDVLFIDEIHRLSP-AVEEVLYPAMED 129 (332)
T ss_pred ChhhHHHHHh----cCCcCCeEEEehhhhcCh-hHHHHhhhhhhh
Confidence 3555555554 355667899999999853 233444444443
No 388
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.66 E-value=0.72 Score=50.21 Aligned_cols=41 Identities=15% Similarity=0.352 Sum_probs=23.9
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
..+.+++||||+|.|.... ...+...++..+..-++.|.+|
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t~ 165 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFATT 165 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEeC
Confidence 4567899999999986533 2344444454433333444444
No 389
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.64 E-value=2.5 Score=43.85 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=16.1
Q ss_pred cEEEEccCCCchhHHHHHHHH
Q 009512 174 SLLVSANTGSGKTASFLVPVI 194 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l 194 (533)
-+++++++|+|||++..-.+.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 378899999999987554443
No 390
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.63 E-value=0.66 Score=46.26 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHHH
Q 009512 158 PTPVQMQAIPSAL----SGK---SLLVSANTGSGKTASFLVP 192 (533)
Q Consensus 158 p~~~Q~~~i~~i~----~g~---~vli~a~TGsGKT~~~llp 192 (533)
.+|||...+..+. +|+ -.|+.||.|.||+..+...
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~ 44 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRAL 44 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHH
Confidence 3577777776665 444 3678999999999865443
No 391
>PRK10867 signal recognition particle protein; Provisional
Probab=92.60 E-value=1.9 Score=44.74 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=15.5
Q ss_pred cEEEEccCCCchhHHHHHHH
Q 009512 174 SLLVSANTGSGKTASFLVPV 193 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~ 193 (533)
-+++++++|+|||+...-.+
T Consensus 102 vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 36789999999998755443
No 392
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.52 E-value=1.4 Score=44.64 Aligned_cols=39 Identities=13% Similarity=0.286 Sum_probs=24.3
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCc-EEEec
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQ-ILMYS 321 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q-~i~~S 321 (533)
.....++||||||.|.... ...+...++..+... ++++|
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999985433 445556666643333 34444
No 393
>PRK10436 hypothetical protein; Provisional
Probab=92.44 E-value=0.2 Score=52.44 Aligned_cols=37 Identities=35% Similarity=0.515 Sum_probs=24.7
Q ss_pred HHHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHH
Q 009512 160 PVQMQAIPSAL--SGKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 160 ~~Q~~~i~~i~--~g~~vli~a~TGsGKT~~~llp~l~~l 197 (533)
+.|.+.+..+. .+.-+|++||||||||+. +..++.++
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~ 242 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTL 242 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhh
Confidence 44555555554 344588999999999985 44555554
No 394
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.38 E-value=0.12 Score=55.72 Aligned_cols=154 Identities=17% Similarity=0.154 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHh--------CCCc--EEEEccCCCch--hHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHH
Q 009512 156 DMPTPVQMQAIPSAL--------SGKS--LLVSANTGSGK--TASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELC 223 (533)
Q Consensus 156 ~~p~~~Q~~~i~~i~--------~g~~--vli~a~TGsGK--T~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~ 223 (533)
..+...|.+++-... +|.. .||-...|-|| |.+- -++...+ ...+++|++.-+..|-
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAg--iIfeNyL---------kGRKrAlW~SVSsDLK 331 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAG--IIFENYL---------KGRKRALWFSVSSDLK 331 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEE--EEehhhh---------cccceeEEEEeccccc
Confidence 356678888886544 3332 56655555555 5432 2333332 2456799999888886
Q ss_pred HHHHHHHHHHhcCCCCeEEEEE----cCCchHHHHHHHHcCCceeecChHHHHHHHHcCCC------------CCCC-ee
Q 009512 224 IQVEEQAKLLGKGLPFKTALVV----GGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDI------------ELDD-IR 286 (533)
Q Consensus 224 ~Q~~~~~~~~~~~~~~~~~~~~----gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~------------~l~~-i~ 286 (533)
-...+.++.++.. ++.+..+. +..+... -... .--++++|+..|+--.+...- .-.+ =+
T Consensus 332 fDAERDL~DigA~-~I~V~alnK~KYakIss~e-n~n~--krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feG 407 (1300)
T KOG1513|consen 332 FDAERDLRDIGAT-GIAVHALNKFKYAKISSKE-NTNT--KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEG 407 (1300)
T ss_pred cchhhchhhcCCC-Cccceehhhcccccccccc-cCCc--cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccce
Confidence 6666666555432 23332211 1000000 0001 124999999877554432110 0112 26
Q ss_pred EEEEeccchhhhc---------chHHHHHHHHHhCCCCcEEEecccC
Q 009512 287 MFVLDEVDCMLQR---------GFRDQVMQIFRAISLPQILMYSATI 324 (533)
Q Consensus 287 ~vVvDEah~~~~~---------~~~~~i~~i~~~~~~~q~i~~SAT~ 324 (533)
+||+||||+-.+. -.+..+..+-..++..+++.-|||-
T Consensus 408 vIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATG 454 (1300)
T KOG1513|consen 408 VIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATG 454 (1300)
T ss_pred eEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccC
Confidence 8999999986541 1567888888999999999999994
No 395
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.31 E-value=2 Score=42.38 Aligned_cols=127 Identities=18% Similarity=0.229 Sum_probs=70.0
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcc--cHHHH-HHHHHHHHHHhcCCCCeEEE-EEcCCch
Q 009512 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP--TRELC-IQVEEQAKLLGKGLPFKTAL-VVGGDAM 250 (533)
Q Consensus 175 vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P--tr~L~-~Q~~~~~~~~~~~~~~~~~~-~~gg~~~ 250 (533)
+++.+-.|+|||+.. .-+.+++. ..+.++++.+- .|+-| .|+..|.++. +..++. -.|+++.
T Consensus 142 il~vGVNG~GKTTTI--aKLA~~l~--------~~g~~VllaA~DTFRAaAiEQL~~w~er~----gv~vI~~~~G~DpA 207 (340)
T COG0552 142 ILFVGVNGVGKTTTI--AKLAKYLK--------QQGKSVLLAAGDTFRAAAIEQLEVWGERL----GVPVISGKEGADPA 207 (340)
T ss_pred EEEEecCCCchHhHH--HHHHHHHH--------HCCCeEEEEecchHHHHHHHHHHHHHHHh----CCeEEccCCCCCcH
Confidence 678999999999863 33444443 34666666663 34443 4555566664 555554 2344433
Q ss_pred HHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc-chHHHHHHHHHhCC------CC-cEEEecc
Q 009512 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR-GFRDQVMQIFRAIS------LP-QILMYSA 322 (533)
Q Consensus 251 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~-~~~~~i~~i~~~~~------~~-q~i~~SA 322 (533)
.--.. -++.. .-+++++|++|=|-||-+. +....+..|.+-+. +. -++.+=|
T Consensus 208 aVafD------------------Ai~~A--kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDA 267 (340)
T COG0552 208 AVAFD------------------AIQAA--KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDA 267 (340)
T ss_pred HHHHH------------------HHHHH--HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEc
Confidence 22111 11111 1346778888888887643 34455555555441 12 3344478
Q ss_pred cCcHHHHHHHHhh
Q 009512 323 TISQEVEKMSSSI 335 (533)
Q Consensus 323 T~~~~~~~~~~~~ 335 (533)
|...+-...++.|
T Consensus 268 ttGqnal~QAk~F 280 (340)
T COG0552 268 TTGQNALSQAKIF 280 (340)
T ss_pred ccChhHHHHHHHH
Confidence 8876665555554
No 396
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.27 E-value=0.75 Score=49.97 Aligned_cols=42 Identities=14% Similarity=0.300 Sum_probs=23.8
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCc
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~ 325 (533)
..++++||||+|+|....|. .+...++..+..-++.|.+|-+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~Ttd~ 164 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLATTDP 164 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEECCc
Confidence 46889999999998654433 2333334333333344444533
No 397
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.21 E-value=0.27 Score=46.90 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=36.1
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.|..+++.|++|+|||+.++-.+...+. .+.+++|++ +.+-..|+.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~----------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ----------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH----------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 4677999999999999865544444432 356688888 4455666666666553
No 398
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=92.21 E-value=0.16 Score=48.17 Aligned_cols=14 Identities=36% Similarity=0.591 Sum_probs=12.2
Q ss_pred EEEEccCCCchhHH
Q 009512 175 LLVSANTGSGKTAS 188 (533)
Q Consensus 175 vli~a~TGsGKT~~ 188 (533)
++|.|+.|||||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999984
No 399
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.20 E-value=0.24 Score=46.58 Aligned_cols=56 Identities=14% Similarity=0.301 Sum_probs=31.2
Q ss_pred ecChHHHHHHHHcCCCCCCCeeEEEEeccchhh-h----cchHHHHHHHHHhC--CCCcEEEecccC
Q 009512 265 VGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML-Q----RGFRDQVMQIFRAI--SLPQILMYSATI 324 (533)
Q Consensus 265 v~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~-~----~~~~~~i~~i~~~~--~~~q~i~~SAT~ 324 (533)
..+...++..+...... -+||+||+|.+. . ..+...+..++... .....+.++++-
T Consensus 103 ~~~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 103 FSALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp G--HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 44455566666554322 589999999998 1 23555666666663 223344455554
No 400
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.16 E-value=1 Score=40.36 Aligned_cols=51 Identities=14% Similarity=0.377 Sum_probs=35.3
Q ss_pred CCeeEEEEeccchhhhcch--HHHHHHHHHhCCCC-cEEEecccCcHHHHHHHH
Q 009512 283 DDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLP-QILMYSATISQEVEKMSS 333 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~--~~~i~~i~~~~~~~-q~i~~SAT~~~~~~~~~~ 333 (533)
..+++||+||+-..++.++ ...+..+++..+.. -+|+..-..|+++.+++.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 5689999999998887763 35666777666554 455555556777766554
No 401
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.14 E-value=0.23 Score=52.90 Aligned_cols=43 Identities=21% Similarity=0.353 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHh----CCCcEEEEccCCCchhHHHHHHHHHHHHh
Q 009512 157 MPTPVQMQAIPSAL----SGKSLLVSANTGSGKTASFLVPVISQCAN 199 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~----~g~~vli~a~TGsGKT~~~llp~l~~l~~ 199 (533)
+|+.+|.+....++ .|+=.|...|||+|||++.+-.++.++..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 78999999887765 78878999999999999866666665543
No 402
>PRK08506 replicative DNA helicase; Provisional
Probab=92.06 E-value=1.3 Score=46.80 Aligned_cols=113 Identities=17% Similarity=0.173 Sum_probs=55.1
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCch
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.-+++.|.||.|||..++ -+..++.. .+..++|++.- .-..|+...+-......+... +..|.-.
T Consensus 191 ~G~LivIaarpg~GKT~fal-~ia~~~~~---------~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~--i~~~~l~ 257 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCL-NMALKALN---------QDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQN--LRTGDLD 257 (472)
T ss_pred CCceEEEEcCCCCChHHHHH-HHHHHHHh---------cCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHH--HhcCCCC
Confidence 45568889999999997544 44444432 24457776532 333443333322212222111 1112212
Q ss_pred HHHH-------HHHHcCCceee-----cChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009512 251 ARQV-------YRIQQGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 251 ~~~~-------~~l~~~~~Iiv-----~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
...+ ..+. +..+.| .|+..+...+++-......+++||||=.+.|.
T Consensus 258 ~~e~~~~~~a~~~l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 258 DDEWERLSDACDELS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHHHHH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 2222 1222 234444 25555555444321112357899999999775
No 403
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.95 E-value=0.14 Score=48.41 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=24.7
Q ss_pred cccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCc-EEEEccCCCchhHH
Q 009512 133 PILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKS-LLVSANTGSGKTAS 188 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~-vli~a~TGsGKT~~ 188 (533)
.+..|++++||+.+.+ .++..|. +++.++|||||++.
T Consensus 106 ~IPt~eeL~LPevlk~-------------------la~~kRGLviiVGaTGSGKSTt 143 (375)
T COG5008 106 KIPTFEELKLPEVLKD-------------------LALAKRGLVIIVGATGSGKSTT 143 (375)
T ss_pred cCCcHHhcCCcHHHHH-------------------hhcccCceEEEECCCCCCchhh
Confidence 4556777777765543 1223333 67899999999986
No 404
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.95 E-value=0.42 Score=43.66 Aligned_cols=32 Identities=38% Similarity=0.473 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHh-CCCcEEEEccCCCchhHH
Q 009512 157 MPTPVQMQAIPSAL-SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~-~g~~vli~a~TGsGKT~~ 188 (533)
..++-|.+.+.... .+..+++.++||||||+.
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34566777776655 688899999999999984
No 405
>PRK13764 ATPase; Provisional
Probab=91.93 E-value=0.36 Score=52.02 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=19.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHH
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l 197 (533)
.+++++++|+||||||+. +..++.++
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i 281 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFY 281 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHH
Confidence 467899999999999984 44444444
No 406
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=91.86 E-value=1.9 Score=48.14 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=16.6
Q ss_pred CCcEEEEccCCCchhHHHHH
Q 009512 172 GKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ll 191 (533)
..++|+.||+|+|||..+..
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 45899999999999986543
No 407
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.80 E-value=0.55 Score=50.30 Aligned_cols=29 Identities=14% Similarity=0.505 Sum_probs=18.9
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhC
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAI 312 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~ 312 (533)
.+.+++||||+|+|....+ ..+...++..
T Consensus 118 ~~~kVvIIDEad~ls~~a~-naLLK~LEep 146 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAF-NAMLKTLEEP 146 (527)
T ss_pred CCceEEEEcCcccCCHHHH-HHHHHHHhCC
Confidence 4678999999998865433 3344444443
No 408
>PRK08760 replicative DNA helicase; Provisional
Probab=91.79 E-value=1.7 Score=46.05 Aligned_cols=114 Identities=14% Similarity=0.137 Sum_probs=54.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCch
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.-++|.|.+|.|||..++ -+..++.. ..+..++|.+.- .-..|+...+-......+... +..|...
T Consensus 228 ~G~LivIaarPg~GKTafal-~iA~~~a~--------~~g~~V~~fSlE-Ms~~ql~~Rl~a~~s~i~~~~--i~~g~l~ 295 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFAL-NIAEYAAI--------KSKKGVAVFSME-MSASQLAMRLISSNGRINAQR--LRTGALE 295 (476)
T ss_pred CCceEEEEeCCCCChhHHHH-HHHHHHHH--------hcCCceEEEecc-CCHHHHHHHHHHhhCCCcHHH--HhcCCCC
Confidence 34557889999999997544 33333321 123457666542 222344443332222222111 1122222
Q ss_pred HHHHHHH------HcCCceeec-----ChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009512 251 ARQVYRI------QQGVELIVG-----TPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 251 ~~~~~~l------~~~~~Iiv~-----Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
..++.++ .....+.|. |++.+....++-.. -..+++||||=.+.|.
T Consensus 296 ~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 296 DEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 2222111 122445443 45555544443211 1347899999998774
No 409
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.73 E-value=5.3 Score=39.83 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=29.0
Q ss_pred CCeeEEEEeccchhhhc-chHHHHHHHHHh-------CCCCcEEEecccCcHHHHHHHHhh
Q 009512 283 DDIRMFVLDEVDCMLQR-GFRDQVMQIFRA-------ISLPQILMYSATISQEVEKMSSSI 335 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~-~~~~~i~~i~~~-------~~~~q~i~~SAT~~~~~~~~~~~~ 335 (533)
.++++||+|=+-++... .....+..+.+. .+...++.++||........+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 45678999888775422 222344444332 133456788888765433334443
No 410
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=91.73 E-value=0.18 Score=51.83 Aligned_cols=47 Identities=30% Similarity=0.340 Sum_probs=35.5
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
++++.|+||||||.++++|.+.. ....++|+=|.-++........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~------------~~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT------------WPGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc------------CCCCEEEEccchhHHHHHHHHHHH
Confidence 47899999999999998887642 124588888998998765554443
No 411
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.70 E-value=1 Score=48.54 Aligned_cols=41 Identities=12% Similarity=0.332 Sum_probs=23.9
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
....+++|+||+|.|.... ...+...++..+..-++.|.+|
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a-~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSA-FNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred cCCCEEEEEEChhhcCHHH-HHHHHHhhccCCCCEEEEEecC
Confidence 3567899999999886432 2334444444334344444444
No 412
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.67 E-value=0.17 Score=44.17 Aligned_cols=117 Identities=20% Similarity=0.319 Sum_probs=58.7
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHH
Q 009512 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 252 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 252 (533)
..+++.+++|+|||+. ++-+...+.. ..-...=|++|- .++=++..+++++.+..|....-
T Consensus 6 mki~ITG~PGvGKtTl-~~ki~e~L~~--------~g~kvgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~~l 66 (179)
T COG1618 6 MKIFITGRPGVGKTTL-VLKIAEKLRE--------KGYKVGGFITPE----------VREGGKRIGFKIVDLATGEEGIL 66 (179)
T ss_pred eEEEEeCCCCccHHHH-HHHHHHHHHh--------cCceeeeEEeee----------eecCCeEeeeEEEEccCCceEEE
Confidence 4689999999999985 4444444443 112223455552 23334445667666654422100
Q ss_pred HHHHHHcCCceeecChHHHHHHHHcC-----CCCCCCeeEEEEeccchhhh--cchHHHHHHHHHh
Q 009512 253 QVYRIQQGVELIVGTPGRLIDLLMKH-----DIELDDIRMFVLDEVDCMLQ--RGFRDQVMQIFRA 311 (533)
Q Consensus 253 ~~~~l~~~~~Iiv~Tp~~l~~~l~~~-----~~~l~~i~~vVvDEah~~~~--~~~~~~i~~i~~~ 311 (533)
... .....-|+-++...+.+.+- .-.+..-+++|+||+--|-- ..|...+..++..
T Consensus 67 --a~~-~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 67 --ARV-GFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred --EEc-CCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 000 00112222222222222210 00133467999999997643 3467777766654
No 413
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.58 E-value=0.76 Score=46.19 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHh----CCC---cEEEEccCCCchhHHHHH
Q 009512 158 PTPVQMQAIPSAL----SGK---SLLVSANTGSGKTASFLV 191 (533)
Q Consensus 158 p~~~Q~~~i~~i~----~g~---~vli~a~TGsGKT~~~ll 191 (533)
.+|||...+..+. +|| -.|+.||.|.||+..+..
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~ 43 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH
Confidence 5688888887765 444 468999999999986543
No 414
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=91.56 E-value=1.6 Score=39.85 Aligned_cols=40 Identities=5% Similarity=0.223 Sum_probs=22.9
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecc
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSA 322 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SA 322 (533)
.....+||+||+|++.... ...+...++..+..-++.|.+
T Consensus 94 ~~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred cCCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 3567899999999986432 333444444433333344443
No 415
>PRK05595 replicative DNA helicase; Provisional
Probab=91.46 E-value=0.82 Score=48.01 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=24.3
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcc
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.|.-++|.|.||.|||..++ -+..++.. ..+.+++|+..
T Consensus 200 ~g~liviaarpg~GKT~~al-~ia~~~a~--------~~g~~vl~fSl 238 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFAL-NIAEYAAL--------REGKSVAIFSL 238 (444)
T ss_pred CCcEEEEEecCCCChHHHHH-HHHHHHHH--------HcCCcEEEEec
Confidence 45557889999999997544 33333321 12455777764
No 416
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=2.8 Score=43.81 Aligned_cols=69 Identities=22% Similarity=0.265 Sum_probs=45.0
Q ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh--------CC----CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCC
Q 009512 140 CSLSQKLLQNIEAAGYDMPTPVQMQAIPSAL--------SG----KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQN 207 (533)
Q Consensus 140 ~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~--------~g----~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~ 207 (533)
+|.+++-++.+...|...-.|.-.+.+.... +. .++|+.+|.|||||..+.-.++ .
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~------------~ 561 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIAL------------S 561 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHh------------h
Confidence 6788888888888876655555555543321 11 2589999999999974432222 1
Q ss_pred CCCceEEEEcccH
Q 009512 208 QKNPLAMVLTPTR 220 (533)
Q Consensus 208 ~~~~~~Lil~Ptr 220 (533)
..-|.+=++.|..
T Consensus 562 S~FPFvKiiSpe~ 574 (744)
T KOG0741|consen 562 SDFPFVKIISPED 574 (744)
T ss_pred cCCCeEEEeChHH
Confidence 4567777888853
No 417
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.30 E-value=0.24 Score=52.47 Aligned_cols=49 Identities=33% Similarity=0.404 Sum_probs=37.3
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009512 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.++++.||||||||..+++|.+... +..++|.=|--+|........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~------------~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY------------PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc------------cCCEEEEECCCcHHHHHHHHHHHC
Confidence 5799999999999999999976321 125888889989977666555544
No 418
>PF05729 NACHT: NACHT domain
Probab=91.19 E-value=2.1 Score=37.59 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=16.6
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHH
Q 009512 174 SLLVSANTGSGKTASFLVPVISQCA 198 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~ 198 (533)
-++|.|+.|+|||... .-+...+.
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHHH
Confidence 4789999999999853 33333443
No 419
>PRK06321 replicative DNA helicase; Provisional
Probab=91.19 E-value=2.2 Score=45.08 Aligned_cols=113 Identities=14% Similarity=0.139 Sum_probs=53.9
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCch
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.=++|.|.+|.|||.- .+-+..++.. ..+..++|.+. ..-..|+...+-.... ++....+..|...
T Consensus 225 ~G~LiiiaarPgmGKTaf-al~ia~~~a~--------~~g~~v~~fSL-EMs~~ql~~Rlla~~s--~v~~~~i~~~~l~ 292 (472)
T PRK06321 225 PSNLMILAARPAMGKTAL-ALNIAENFCF--------QNRLPVGIFSL-EMTVDQLIHRIICSRS--EVESKKISVGDLS 292 (472)
T ss_pred CCcEEEEEeCCCCChHHH-HHHHHHHHHH--------hcCCeEEEEec-cCCHHHHHHHHHHhhc--CCCHHHhhcCCCC
Confidence 344578899999999974 4444444432 12344666652 1222333332221111 1211111122222
Q ss_pred HHHHH-------HHHcCCceeec-----ChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009512 251 ARQVY-------RIQQGVELIVG-----TPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 251 ~~~~~-------~l~~~~~Iiv~-----Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
...+. .+. ...+.|- |...+....++... -..+++||||=.+.|.
T Consensus 293 ~~e~~~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 293 GRDFQRIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 22222 222 2345553 45555444443211 1347899999999875
No 420
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.17 E-value=1 Score=49.24 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=15.7
Q ss_pred CcEEEEccCCCchhHHHHHH
Q 009512 173 KSLLVSANTGSGKTASFLVP 192 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp 192 (533)
..+|+.||.|+|||..+...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred ceEEEECCCCCChHHHHHHH
Confidence 34699999999999865443
No 421
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.17 E-value=1 Score=52.77 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=63.6
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHhhc---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cccccCCCCCccEEE
Q 009512 380 FTPPAVVYVGSRLGADLLSNAISVTT---GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-ILGRGVELLGVRQVI 455 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~~~---~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~-~~~~Gldi~~v~~VI 455 (533)
.+.+++|.++++.-|...+..+.+.. ++.+..++|+.+..++..+++.+.+|..+|+|+|. .+...+.+.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 45689999999999999888876432 46778899999999999999999999999999997 445556777888877
Q ss_pred E
Q 009512 456 I 456 (533)
Q Consensus 456 ~ 456 (533)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 5
No 422
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=91.09 E-value=2.4 Score=42.24 Aligned_cols=58 Identities=5% Similarity=0.178 Sum_probs=35.4
Q ss_pred eeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecc
Q 009512 263 LIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSA 322 (533)
Q Consensus 263 Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SA 322 (533)
|-|-....+.+.+..... ....+++|+|+||.|... -...+..+++..+...+|++|.
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp~~~fILi~~ 161 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNEA-AANALLKTLEEPGNGTLILIAP 161 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCHH-HHHHHHHHHhCCCCCeEEEEEC
Confidence 444444455555555443 357899999999998643 3556666677666444444443
No 423
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.07 E-value=0.49 Score=52.85 Aligned_cols=92 Identities=14% Similarity=0.263 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCcccHHHHHHHHHh---hcC-CeEEE-EcCCCCHHHHHHHHHHHhcCCCcEEEEeccc-cccCCC-C--C
Q 009512 380 FTPPAVVYVGSRLGADLLSNAISV---TTG-MKALS-IHGEKPMKERREIMRSFLVGEVPVIVATGIL-GRGVEL-L--G 450 (533)
Q Consensus 380 ~~~~~lIF~~s~~~~~~l~~~l~~---~~~-~~~~~-ih~~~~~~~r~~~~~~f~~g~~~VLvaT~~~-~~Gldi-~--~ 450 (533)
.+.++++.++|..-+...++.|.+ ..+ ..+.. ||+.++.++++++++.|.+|..+|||+|..+ ..-.+. . .
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~k 203 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLK 203 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccC
Confidence 357899999999888888887752 112 33333 9999999999999999999999999999853 333331 1 3
Q ss_pred ccEEEEcCCC------CCHhHHHHhhc
Q 009512 451 VRQVIIFDMP------NSIKEYVHQIG 471 (533)
Q Consensus 451 v~~VI~~~~p------~s~~~y~qriG 471 (533)
.++|+.-|.. .+++..+..+|
T Consensus 204 FdfifVDDVDA~LkaskNvDriL~LlG 230 (1187)
T COG1110 204 FDFIFVDDVDAILKASKNVDRLLRLLG 230 (1187)
T ss_pred CCEEEEccHHHHHhccccHHHHHHHcC
Confidence 5667665532 45555555555
No 424
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.04 E-value=0.34 Score=52.47 Aligned_cols=38 Identities=34% Similarity=0.392 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHhC--CCcEEEEccCCCchhHHHHHHHHHHH
Q 009512 159 TPVQMQAIPSALS--GKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 159 ~~~Q~~~i~~i~~--g~~vli~a~TGsGKT~~~llp~l~~l 197 (533)
.+-|.+.+..++. ..-++++||||||||+. +..++..+
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 3556666655553 34578999999999985 44555544
No 425
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=91.03 E-value=0.52 Score=45.67 Aligned_cols=37 Identities=32% Similarity=0.495 Sum_probs=23.9
Q ss_pred HHHHHHHHHHh--CCCcEEEEccCCCchhHHHHHHHHHHH
Q 009512 160 PVQMQAIPSAL--SGKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 160 ~~Q~~~i~~i~--~g~~vli~a~TGsGKT~~~llp~l~~l 197 (533)
+-|.+.+..++ .+..++++++||||||+. +..++..+
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 44555555544 234589999999999984 34444443
No 426
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.01 E-value=3.5 Score=41.96 Aligned_cols=60 Identities=12% Similarity=0.203 Sum_probs=32.3
Q ss_pred ceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 262 ELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 262 ~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
.|.|-..-.+.+.+.... .-....++||||+|.|... -...+...++..+...++++.+.
T Consensus 120 ~I~VdqiR~l~~~~~~~~-~~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~ 179 (365)
T PRK07471 120 VITVDEVRELISFFGLTA-AEGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSH 179 (365)
T ss_pred cccHHHHHHHHHHhCcCc-ccCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEEC
Confidence 344444333434333222 2356789999999988543 34555566666544444444333
No 427
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=90.96 E-value=2.2 Score=45.46 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=78.1
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH-hcCCCCeE-EEEEcCCc
Q 009512 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL-GKGLPFKT-ALVVGGDA 249 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~-~~~~~~~~-~~~~gg~~ 249 (533)
.+-.+..-|--.|||. |+.|++..++. .-.+-++.|++.-+.-++-+.+++..- .+-++-+. +..-+
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~-------s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~--- 270 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLK-------NIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKD--- 270 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHH-------hhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecC---
Confidence 3556777899999997 68899888875 246788999999998877766655422 22222221 11111
Q ss_pred hHHHHHHHHcCCceeecChHHH-----HHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC--CCCcEEEecc
Q 009512 250 MARQVYRIQQGVELIVGTPGRL-----IDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSA 322 (533)
Q Consensus 250 ~~~~~~~l~~~~~Iiv~Tp~~l-----~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~--~~~q~i~~SA 322 (533)
..|.+.-|+.= ......+...-+++.+++|||||-+. ...+..|+-.+ ++.++|..|.
T Consensus 271 -----------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS 335 (668)
T PHA03372 271 -----------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISS 335 (668)
T ss_pred -----------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeC
Confidence 12333332221 12223344556788999999999653 23344555444 6788999987
Q ss_pred cC
Q 009512 323 TI 324 (533)
Q Consensus 323 T~ 324 (533)
|-
T Consensus 336 ~N 337 (668)
T PHA03372 336 TN 337 (668)
T ss_pred CC
Confidence 73
No 428
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=90.92 E-value=0.3 Score=52.59 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=16.0
Q ss_pred CCCcEEEEccCCCchhH
Q 009512 171 SGKSLLVSANTGSGKTA 187 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~ 187 (533)
.|+-+.+.|++|||||+
T Consensus 360 ~G~~vaIvG~SGsGKST 376 (529)
T TIGR02868 360 PGERVAILGPSGSGKST 376 (529)
T ss_pred CCCEEEEECCCCCCHHH
Confidence 78889999999999998
No 429
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.91 E-value=2.4 Score=42.15 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=15.0
Q ss_pred CCcEEEEccCCCchhHH
Q 009512 172 GKSLLVSANTGSGKTAS 188 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~ 188 (533)
-+-+|+.+|+|+|||+.
T Consensus 185 PKGVLLYGPPGTGKTLL 201 (406)
T COG1222 185 PKGVLLYGPPGTGKTLL 201 (406)
T ss_pred CCceEeeCCCCCcHHHH
Confidence 46799999999999984
No 430
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=90.88 E-value=0.98 Score=45.89 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=20.5
Q ss_pred HHHHHHHHHh---CCCcEEEEccCCCchhHH
Q 009512 161 VQMQAIPSAL---SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 161 ~Q~~~i~~i~---~g~~vli~a~TGsGKT~~ 188 (533)
.=..++..+. .|+..+|.||.|+|||+.
T Consensus 155 ~~~rvID~l~PIGkGQR~lIvgppGvGKTTL 185 (416)
T PRK09376 155 LSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL 185 (416)
T ss_pred cceeeeeeecccccCceEEEeCCCCCChhHH
Confidence 3334444443 788999999999999974
No 431
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=90.86 E-value=4.9 Score=36.05 Aligned_cols=140 Identities=12% Similarity=0.184 Sum_probs=63.1
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHHH
Q 009512 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQV 254 (533)
Q Consensus 175 vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 254 (533)
+.|.-..|=|||++++=.+++.+ +.+.+++|+.=.+.-- -..+.+.+..--++.... .|.......
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~----------G~G~rV~ivQFlKg~~--~~GE~~~l~~l~~~~~~~--~g~~f~~~~ 71 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA----------GHGMRVLIVQFLKGGR--YSGELKALKKLPNVEIER--FGKGFVWRM 71 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH----------CTT--EEEEESS--SS----HHHHHHGGGT--EEEE----TT----G
T ss_pred EEEEeCCCCCchHHHHHHHHHHH----------hCCCEEEEEEEecCCC--CcCHHHHHHhCCeEEEEE--cCCcccccC
Confidence 55666789999999887777655 4577888887554410 112333332211222211 111110000
Q ss_pred HHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcch--HHHHHHHHHhCCCC-cEEEecccCcHHHHHH
Q 009512 255 YRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLP-QILMYSATISQEVEKM 331 (533)
Q Consensus 255 ~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~--~~~i~~i~~~~~~~-q~i~~SAT~~~~~~~~ 331 (533)
..-. .+ .......++.... .+.-..+++||+||+-..++.++ ...+..++..-+.. -+|+..-.+|+++...
T Consensus 72 ~~~~--~~--~~~~~~~~~~a~~-~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~ 146 (172)
T PF02572_consen 72 NEEE--ED--RAAAREGLEEAKE-AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEA 146 (172)
T ss_dssp GGHH--HH--HHHHHHHHHHHHH-HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH
T ss_pred CCcH--HH--HHHHHHHHHHHHH-HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHh
Confidence 0000 00 1111112222221 12245789999999998887773 46677777765444 4555555567777666
Q ss_pred HH
Q 009512 332 SS 333 (533)
Q Consensus 332 ~~ 333 (533)
+.
T Consensus 147 AD 148 (172)
T PF02572_consen 147 AD 148 (172)
T ss_dssp -S
T ss_pred CC
Confidence 54
No 432
>PRK09087 hypothetical protein; Validated
Probab=90.80 E-value=1.1 Score=42.37 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=23.0
Q ss_pred EEEEeccchhhhcchHHHHHHHHHhC--CCCcEEEecccCcHHH
Q 009512 287 MFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEV 328 (533)
Q Consensus 287 ~vVvDEah~~~~~~~~~~i~~i~~~~--~~~q~i~~SAT~~~~~ 328 (533)
+|++|++|.+. .....+..++..+ ...++|+.|.+.|...
T Consensus 90 ~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~~~ 131 (226)
T PRK09087 90 PVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPSSW 131 (226)
T ss_pred eEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChHHh
Confidence 79999999763 2244555666554 2344555455555433
No 433
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=90.79 E-value=0.45 Score=52.90 Aligned_cols=74 Identities=24% Similarity=0.247 Sum_probs=56.9
Q ss_pred HcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009512 152 AAGYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 152 ~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
+.++..++|-|-+++-.-+....+++.+|+|+|||-.+.- ++..+.+ +...++++|++....-.+|..+.+.
T Consensus 733 ~~n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avq-il~~lyh-------n~p~qrTlivthsnqaln~lfeKi~ 804 (1320)
T KOG1806|consen 733 KKNQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQ-ILSVLYH-------NSPNQRTLIVTHSNQALNQLFEKIM 804 (1320)
T ss_pred ccchhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhh-hhhhhhh-------cCCCcceEEEEecccchhHHHHHHH
Confidence 3456678999999999999989999999999999976543 3333332 2567889999999888788777665
Q ss_pred HH
Q 009512 232 LL 233 (533)
Q Consensus 232 ~~ 233 (533)
++
T Consensus 805 ~~ 806 (1320)
T KOG1806|consen 805 AL 806 (1320)
T ss_pred hc
Confidence 54
No 434
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=90.71 E-value=3.3 Score=37.37 Aligned_cols=140 Identities=14% Similarity=0.153 Sum_probs=70.8
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHH-HHHHHHHhcCCCCeEEEEEcCCchHHH
Q 009512 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQV-EEQAKLLGKGLPFKTALVVGGDAMARQ 253 (533)
Q Consensus 175 vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~-~~~~~~~~~~~~~~~~~~~gg~~~~~~ 253 (533)
++|.-..|-|||++++-.+++.+ +.+.+++|+.=-+--...= ...+.++. ..+....+-.|.....+
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~----------GhG~rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~~g~tw~~~ 98 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRAL----------GHGLRVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMGEGFTWETQ 98 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHh----------cCCCEEEEEEEeecCcchhHHHHHHhhc--cceeEEecCCceeCCCc
Confidence 56677888899999887777655 4567787775222111110 11223331 11111111111111111
Q ss_pred HHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcch--HHHHHHHHHhCCCCcEEEeccc-CcHHHHH
Q 009512 254 VYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLPQILMYSAT-ISQEVEK 330 (533)
Q Consensus 254 ~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~--~~~i~~i~~~~~~~q~i~~SAT-~~~~~~~ 330 (533)
... .++ ......+..... .+.-..+++||+||.-..+..++ ...+..++..-+..+-|.+|.. .|+.+.+
T Consensus 99 ~~~----~d~--~aa~~~w~~a~~-~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie 171 (198)
T COG2109 99 DRE----ADI--AAAKAGWEHAKE-ALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIE 171 (198)
T ss_pred CcH----HHH--HHHHHHHHHHHH-HHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHH
Confidence 000 012 122222222211 11123688999999998887763 3566666666666666666665 5776666
Q ss_pred HHH
Q 009512 331 MSS 333 (533)
Q Consensus 331 ~~~ 333 (533)
++.
T Consensus 172 ~AD 174 (198)
T COG2109 172 LAD 174 (198)
T ss_pred HHH
Confidence 554
No 435
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=90.65 E-value=0.72 Score=46.43 Aligned_cols=63 Identities=24% Similarity=0.363 Sum_probs=39.0
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH
Q 009512 147 LQNIEAAGYDMPTPVQMQAIPSAL-SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 147 ~~~l~~~g~~~p~~~Q~~~i~~i~-~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
++.|...|+ +++.+.+.+..+. .+.+++++++||||||.. +-.++.. . ....+++++--+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~-i---------~~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLAL-V---------APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHcc-C---------CCCCcEEEECCccee
Confidence 344445554 4456666666555 567999999999999973 2222222 1 123457777777676
No 436
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.64 E-value=1.1 Score=47.77 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=36.3
Q ss_pred CCCCcccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009512 129 AVPAPILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 129 ~~p~~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~ 189 (533)
.++.|-.+|++.|=-+.+...|+.. ....|-.+..-. +-.-+.+|+.+|+|+|||+.+
T Consensus 425 ~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 425 LVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 3456777899988666666666532 222332222222 113467999999999999854
No 437
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.58 E-value=3.5 Score=44.15 Aligned_cols=69 Identities=23% Similarity=0.444 Sum_probs=54.9
Q ss_pred EEEEEcCcccHHHHHHHHHh---hc-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccccc-CCCCCccE
Q 009512 384 AVVYVGSRLGADLLSNAISV---TT-GMKALSIHGEKPMKERREIMRSFLVGEVPVIVATG-----ILGRG-VELLGVRQ 453 (533)
Q Consensus 384 ~lIF~~s~~~~~~l~~~l~~---~~-~~~~~~ih~~~~~~~r~~~~~~f~~g~~~VLvaT~-----~~~~G-ldi~~v~~ 453 (533)
+||++++++-|..+++.+.. .. ++.+..++||++...+... ++.| .+|||+|+ .+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---LKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---HhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 99999999999999887752 33 5778999999987666544 4446 99999998 45566 88888998
Q ss_pred EEE
Q 009512 454 VII 456 (533)
Q Consensus 454 VI~ 456 (533)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 886
No 438
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.55 E-value=2.5 Score=48.20 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchhHHHHH
Q 009512 172 GKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ll 191 (533)
..++++.||+|+|||.....
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred cCceEEECCCCCCHHHHHHH
Confidence 34799999999999986543
No 439
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=90.49 E-value=0.37 Score=52.24 Aligned_cols=49 Identities=22% Similarity=0.175 Sum_probs=39.5
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009512 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
+++++.||||||||..+++|-+..+ +..++|+=|--|+......+.++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~------------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW------------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5799999999999999999987643 234888889999987776666654
No 440
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=90.46 E-value=2.6 Score=44.35 Aligned_cols=91 Identities=20% Similarity=0.288 Sum_probs=51.5
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCch
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAM 250 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 250 (533)
.|.-+++.+++|+|||+..+- ++..+.. .+.+++|+..- +-..|+...+.++.- ......+...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq-~a~~~a~---------~g~kvlYvs~E-Es~~qi~~ra~rlg~--~~~~l~~~~e--- 156 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQ-VACQLAK---------NQMKVLYVSGE-ESLQQIKMRAIRLGL--PEPNLYVLSE--- 156 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHH-HHHHHHh---------cCCcEEEEECc-CCHHHHHHHHHHcCC--ChHHeEEcCC---
Confidence 456789999999999985433 3333322 23468888764 445666665555421 1111111110
Q ss_pred HHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009512 251 ARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 251 ~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
.+.+.+...+.. ...++||+|.+..+.
T Consensus 157 ---------------~~~~~I~~~i~~-----~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 157 ---------------TNWEQICANIEE-----ENPQACVIDSIQTLY 183 (454)
T ss_pred ---------------CCHHHHHHHHHh-----cCCcEEEEecchhhc
Confidence 233444444433 245789999998765
No 441
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.44 E-value=1.6 Score=44.59 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=16.5
Q ss_pred CCCcEEEEccCCCchhHH
Q 009512 171 SGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~ 188 (533)
.|+.+++.||+|+|||+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 788899999999999984
No 442
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=90.41 E-value=13 Score=33.25 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=13.8
Q ss_pred EEEEccCCCchhHHHHH
Q 009512 175 LLVSANTGSGKTASFLV 191 (533)
Q Consensus 175 vli~a~TGsGKT~~~ll 191 (533)
+++.+++|+|||.....
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999986443
No 443
>PRK09165 replicative DNA helicase; Provisional
Probab=90.33 E-value=2.3 Score=45.24 Aligned_cols=123 Identities=10% Similarity=0.080 Sum_probs=57.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhccc-----CCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEE
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHS-----QNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVV 245 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~-----~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~ 245 (533)
.|.-++|.|.||+|||..++-.+.+......+... ....+..++|++. ..-..|+...+-......+... +.
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSl-EMs~~ql~~R~la~~s~v~~~~--i~ 292 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSL-EMSAEQLATRILSEQSEISSSK--IR 292 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeC-cCCHHHHHHHHHHHhcCCCHHH--Hh
Confidence 44557889999999997544433333222111000 0012456777753 2333444443322222222211 12
Q ss_pred cCCchHHHHHHHH------cCCceee-----cChHHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009512 246 GGDAMARQVYRIQ------QGVELIV-----GTPGRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 246 gg~~~~~~~~~l~------~~~~Iiv-----~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
.|.-...++.++. ....+.| .|+..+...+++... -..+++||||=.|.|.
T Consensus 293 ~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 293 RGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 2222222222221 1234444 245555554443211 1347899999999775
No 444
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=90.29 E-value=0.12 Score=46.64 Aligned_cols=43 Identities=9% Similarity=0.202 Sum_probs=29.6
Q ss_pred HHHcCCceeecChHHHHHHHHcCCCC--CCCeeEEEEeccchhhh
Q 009512 256 RIQQGVELIVGTPGRLIDLLMKHDIE--LDDIRMFVLDEVDCMLQ 298 (533)
Q Consensus 256 ~l~~~~~Iiv~Tp~~l~~~l~~~~~~--l~~i~~vVvDEah~~~~ 298 (533)
.....++|||+++..|++-..+..+. ..+-.+|||||||.+.+
T Consensus 115 ~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 115 ELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 33456899999999987765543321 23447999999998865
No 445
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=90.26 E-value=1.2 Score=50.40 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=14.9
Q ss_pred CCcEEEEccCCCchhHHH
Q 009512 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
+..+++.+|+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456899999999999753
No 446
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.26 E-value=0.45 Score=43.98 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=16.0
Q ss_pred EEEEccCCCchhHHHHHHHHHHH
Q 009512 175 LLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 175 vli~a~TGsGKT~~~llp~l~~l 197 (533)
+++++|||||||+. +..++..+
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHh
Confidence 68899999999985 33344443
No 447
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.15 E-value=2.6 Score=47.95 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=18.0
Q ss_pred CCCcEEEEccCCCchhHHHHHHH
Q 009512 171 SGKSLLVSANTGSGKTASFLVPV 193 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~ 193 (533)
...++++.||+|+|||..+...+
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la 221 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLA 221 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHH
Confidence 34589999999999998765443
No 448
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=90.13 E-value=0.41 Score=34.87 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=17.6
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHH
Q 009512 172 GKSLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~l~~l 197 (533)
|...++.+++|||||.. +-++..+
T Consensus 23 g~~tli~G~nGsGKSTl--lDAi~~~ 46 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL--LDAIQTV 46 (62)
T ss_pred CcEEEEECCCCCCHHHH--HHHHHHH
Confidence 45689999999999984 4444433
No 449
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=90.11 E-value=1.2 Score=42.36 Aligned_cols=71 Identities=15% Similarity=0.216 Sum_probs=55.5
Q ss_pred CcEEEEeccccccCCCCCccEEEEcCCCCCHhHHHHhhcccC-CCCCccEEEEEecCcCHHHHHHHHHHHHh
Q 009512 433 VPVIVATGILGRGVELLGVRQVIIFDMPNSIKEYVHQIGRAS-QMGDEGTAIVFVNEENKNLFQELVDILKS 503 (533)
Q Consensus 433 ~~VLvaT~~~~~Gldi~~v~~VI~~~~p~s~~~y~qriGR~g-R~g~~g~~~~l~~~~~~~~~~~l~~~l~~ 503 (533)
..|+|.-+.++||+.+.++.+..+..-+...+.+.||----| |.|-.+.|-+++++.-...+..+...-+.
T Consensus 136 ~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~dl~Ri~~~~~l~~~f~~i~~~~e~ 207 (239)
T PF10593_consen 136 NVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYEDLCRIYMPEELYDWFRHIAEAEEE 207 (239)
T ss_pred eEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCcccccceEEecCHHHHHHHHHHHHHHHH
Confidence 678899999999999999988888888887777777643233 66777889999988777777666655444
No 450
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.09 E-value=1.6 Score=46.33 Aligned_cols=41 Identities=12% Similarity=0.392 Sum_probs=23.9
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
.....++|+||+|.|....+ ..+...+...+...++.+.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEEC
Confidence 35678999999998864433 333444444333444444444
No 451
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=0.82 Score=45.45 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=30.1
Q ss_pred cCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHH----HHhCCCcEEEEccCCCchhHHH
Q 009512 135 LSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIP----SALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 135 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~----~i~~g~~vli~a~TGsGKT~~~ 189 (533)
.+|.+.+=-+.+.+.|...= ..|.|.--+- .+...+.+|+.+|+|+|||..+
T Consensus 89 v~f~DIggLe~v~~~L~e~V---ilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlA 144 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELV---ILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLA 144 (386)
T ss_pred eehhhccchHHHHHHHHHHH---hhcccchhhhcccccccCCccceecCCCCchHHHHH
Confidence 46777766666666665431 1122221111 1114467999999999999854
No 452
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.95 E-value=3.6 Score=46.93 Aligned_cols=30 Identities=20% Similarity=0.273 Sum_probs=21.2
Q ss_pred HHHHHHHHh----C--CCcEEEEccCCCchhHHHHH
Q 009512 162 QMQAIPSAL----S--GKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 162 Q~~~i~~i~----~--g~~vli~a~TGsGKT~~~ll 191 (533)
|...+..+. . ..+.++.||.|+|||...-.
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~ 227 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEG 227 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHH
Confidence 555555543 2 35899999999999986543
No 453
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.94 E-value=2.6 Score=46.05 Aligned_cols=41 Identities=15% Similarity=0.355 Sum_probs=26.5
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
....+++||||+|.|.... ...+...++..+..-++.|.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEEEeC
Confidence 4578899999999986532 3445555665544445555555
No 454
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.82 E-value=0.63 Score=46.26 Aligned_cols=57 Identities=25% Similarity=0.315 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHH-HHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH
Q 009512 155 YDMPTPVQMQAI-PSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 155 ~~~p~~~Q~~~i-~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
+..+.+.|..-+ -++..+++++++++||||||.. +.+++..+ ....+++.+=-|.++
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~-lnall~~I----------p~~~rivtIEdt~E~ 182 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTTL-LNALLDFI----------PPEERIVTIEDTPEL 182 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHH-HHHHHHhC----------CchhcEEEEeccccc
Confidence 445666666544 4455889999999999999973 44444432 223456776666665
No 455
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.78 E-value=1.3 Score=41.57 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=26.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccH
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTR 220 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr 220 (533)
.|.-+.+.+++|+|||..++..+...+.... ..+....++|+..-.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~----~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGE----LGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccc----cCCCcceEEEEecCC
Confidence 4566899999999999865543333222100 001235677777543
No 456
>PRK04328 hypothetical protein; Provisional
Probab=89.64 E-value=0.7 Score=44.39 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=34.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHh
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLG 234 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~ 234 (533)
.|..+++.+++|+|||..++-.+...+. .+.+++|++ +.+-..++.+.++.+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~----------~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ----------MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh----------cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4667899999999999855444444332 245577776 4445556666666653
No 457
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.61 E-value=3.4 Score=47.21 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=16.4
Q ss_pred CCcEEEEccCCCchhHHHHH
Q 009512 172 GKSLLVSANTGSGKTASFLV 191 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ll 191 (533)
..+.++.||+|+|||..+..
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CCceEEEcCCCCCHHHHHHH
Confidence 35899999999999986543
No 458
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.54 E-value=1.4 Score=48.54 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=29.7
Q ss_pred eEEEEeccchhhhcchHHHHHHHHHhCCCC-cEEEeccc
Q 009512 286 RMFVLDEVDCMLQRGFRDQVMQIFRAISLP-QILMYSAT 323 (533)
Q Consensus 286 ~~vVvDEah~~~~~~~~~~i~~i~~~~~~~-q~i~~SAT 323 (533)
=++|+|+.|++.+......+..++++.++. ..+..|-+
T Consensus 131 l~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 131 LYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred eEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 489999999999888888899999998655 44444544
No 459
>PF00098 zf-CCHC: Zinc knuckle; InterPro: IPR001878 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (CCHC) type zinc finger domains, and have the sequence: C-X2-C-X4-H-X4-C where X can be any amino acid, and number indicates the number of residues. These 18 residues CCHC zinc finger domains are mainly found in the nucleocapsid protein of retroviruses. It is required for viral genome packaging and for early infection process [, , ]. It is also found in eukaryotic proteins involved in RNA binding or single-stranded DNA binding []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 2L44_A 1A1T_A 1WWG_A 1U6P_A 1WWD_A 1WWE_A 1A6B_B 1F6U_A 1MFS_A 1NCP_C ....
Probab=89.52 E-value=0.15 Score=27.12 Aligned_cols=13 Identities=38% Similarity=0.820 Sum_probs=11.3
Q ss_pred Ceeeeeccccccc
Q 009512 37 PKCVICGRYGEYI 49 (533)
Q Consensus 37 ~~c~~c~~~~~~~ 49 (533)
+.|+.||..||+.
T Consensus 1 ~~C~~C~~~GH~~ 13 (18)
T PF00098_consen 1 RKCFNCGEPGHIA 13 (18)
T ss_dssp SBCTTTSCSSSCG
T ss_pred CcCcCCCCcCccc
Confidence 4799999999966
No 460
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=89.48 E-value=2.3 Score=45.38 Aligned_cols=41 Identities=12% Similarity=0.333 Sum_probs=24.8
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEeccc
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSAT 323 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT 323 (533)
....+++|+||||+|.... ...+...++..+..-.+.|.+|
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEEC
Confidence 3578899999999986543 3344555555443333344444
No 461
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=89.43 E-value=0.56 Score=44.27 Aligned_cols=53 Identities=25% Similarity=0.217 Sum_probs=32.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHH
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLL 233 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~ 233 (533)
.|..+++.|++|+|||...+-.+.+.+.. .+.+++|++-. +-..++.+.++.+
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~---------~ge~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN---------FGEKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH---------HT--EEEEESS-S-HHHHHHHHHTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh---------cCCcEEEEEec-CCHHHHHHHHHHc
Confidence 45678999999999998655445444432 14458888743 3335556666554
No 462
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.41 E-value=5.5 Score=42.04 Aligned_cols=99 Identities=15% Similarity=0.259 Sum_probs=74.7
Q ss_pred cCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHHH---HHH
Q 009512 180 NTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMARQ---VYR 256 (533)
Q Consensus 180 ~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~ 256 (533)
-.++||+..-++++...+.. +-.|.+||.+-+.+-|.|++..+..+ -++++..++|..+..+. +.+
T Consensus 365 lvF~gse~~K~lA~rq~v~~--------g~~PP~lIfVQs~eRak~L~~~L~~~---~~i~v~vIh~e~~~~qrde~~~~ 433 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVAS--------GFKPPVLIFVQSKERAKQLFEELEIY---DNINVDVIHGERSQKQRDETMER 433 (593)
T ss_pred heeeecchhHHHHHHHHHhc--------cCCCCeEEEEecHHHHHHHHHHhhhc---cCcceeeEecccchhHHHHHHHH
Confidence 35889998877777666554 56788999999999999988877622 35788888888665443 334
Q ss_pred HHcC-CceeecChHHHHHHHHcCCCCCCCeeEEEEeccch
Q 009512 257 IQQG-VELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDC 295 (533)
Q Consensus 257 l~~~-~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~ 295 (533)
++.| ..++||| +++.++ +++..+.+||-+++-.
T Consensus 434 FR~g~IwvLicT-----dll~RG-iDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 434 FRIGKIWVLICT-----DLLARG-IDFKGVNLVINYDFPQ 467 (593)
T ss_pred HhccCeeEEEeh-----hhhhcc-ccccCcceEEecCCCc
Confidence 4444 7899999 777776 7899999999987653
No 463
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=89.35 E-value=0.27 Score=30.28 Aligned_cols=19 Identities=32% Similarity=0.697 Sum_probs=16.2
Q ss_pred ccCCCCCeeeeeccccccc
Q 009512 31 EALPEEPKCVICGRYGEYI 49 (533)
Q Consensus 31 ~~~~~~~~c~~c~~~~~~~ 49 (533)
.+.|..-+|..|+..||||
T Consensus 3 k~pP~~Y~C~~C~~~GH~i 21 (32)
T PF13696_consen 3 KKPPPGYVCHRCGQKGHWI 21 (32)
T ss_pred CCCCCCCEeecCCCCCccH
Confidence 3556678999999999999
No 464
>PF12846 AAA_10: AAA-like domain
Probab=89.23 E-value=0.63 Score=45.74 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=29.7
Q ss_pred CCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHH
Q 009512 172 GKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 224 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~ 224 (533)
++++++.|+||||||.... .++..+.. .+..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~-~l~~~~~~---------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK-NLLEQLIR---------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHH---------cCCCEEEEcCCchHHH
Confidence 3679999999999998655 45444443 3566788877655533
No 465
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.22 E-value=0.6 Score=45.26 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=21.7
Q ss_pred HHHHHHhCCCcEEEEccCCCchhHHHH
Q 009512 164 QAIPSALSGKSLLVSANTGSGKTASFL 190 (533)
Q Consensus 164 ~~i~~i~~g~~vli~a~TGsGKT~~~l 190 (533)
+++..+..++++++.|++|+|||..+.
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 344555689999999999999998654
No 466
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.21 E-value=2 Score=47.39 Aligned_cols=43 Identities=12% Similarity=0.313 Sum_probs=24.4
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecccCcH
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSATISQ 326 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~~ 326 (533)
...+++|+||||.|.... ...+...+...+..-++.+.+|-+.
T Consensus 117 g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILaTte~~ 159 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILATTEVH 159 (725)
T ss_pred CCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEEcCChh
Confidence 567899999999886432 3334444444333334444444333
No 467
>COG1485 Predicted ATPase [General function prediction only]
Probab=89.20 E-value=11 Score=37.59 Aligned_cols=108 Identities=15% Similarity=0.205 Sum_probs=59.1
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCCchHH
Q 009512 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGDAMAR 252 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 252 (533)
+.+-+.|+.|.|||. ++-++-+.+- ...+ .-++.-.-...+++.+..+.... .+...
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp-------~~~k----~R~HFh~FM~~vH~~l~~l~g~~----------dpl~~ 122 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLP-------GERK----RRLHFHRFMARVHQRLHTLQGQT----------DPLPP 122 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCC-------cccc----ccccHHHHHHHHHHHHHHHcCCC----------CccHH
Confidence 567889999999996 4444433221 0111 22455566666677666663110 11111
Q ss_pred HHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC--CCCcEEEecccCcHHH
Q 009512 253 QVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI--SLPQILMYSATISQEV 328 (533)
Q Consensus 253 ~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~--~~~q~i~~SAT~~~~~ 328 (533)
.. .++ ..+.+++.+||+| +.|.+-.-.+..+++.+ ....+++.|.|.|+++
T Consensus 123 iA-----------------~~~-------~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 123 IA-----------------DEL-------AAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred HH-----------------HHH-------HhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 11 122 2345679999998 33333222233344443 4778889999988654
No 468
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=89.12 E-value=2.1 Score=40.61 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=16.5
Q ss_pred hCCC-cEEEEccCCCchhHHHH
Q 009512 170 LSGK-SLLVSANTGSGKTASFL 190 (533)
Q Consensus 170 ~~g~-~vli~a~TGsGKT~~~l 190 (533)
..|+ -+.++++-|||||+..-
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~R 69 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRR 69 (269)
T ss_pred hcCCceEEEEecCCCchhHHHH
Confidence 3455 67889999999998654
No 469
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=89.04 E-value=1.7 Score=44.70 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.2
Q ss_pred CCcEEEEccCCCchhHHH
Q 009512 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
.+.+++.||+|+|||+.+
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 357999999999999853
No 470
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=89.02 E-value=1.2 Score=44.33 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=28.7
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHH
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELC 223 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~ 223 (533)
.|+-+.+.+|+|||||..++-.+. .... .+..++|+..-..+-
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~-~~~~---------~g~~~vyId~E~~~~ 96 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIA-EAQK---------LGGTVAFIDAEHALD 96 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHH---------cCCCEEEECccccHH
Confidence 456789999999999985443333 3322 356688888755553
No 471
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.98 E-value=0.79 Score=49.59 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=30.7
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecc
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSA 322 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SA 322 (533)
+++-.++|+|||-.-+|-..+..+...+.+....+++++=|
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIA 660 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIA 660 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEe
Confidence 45567899999999888777777888777765557666644
No 472
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.97 E-value=4.9 Score=46.37 Aligned_cols=41 Identities=10% Similarity=0.179 Sum_probs=29.0
Q ss_pred eeEEEEeccchhhhcchHHHHHHHHHhCCC-CcEEEecccCc
Q 009512 285 IRMFVLDEVDCMLQRGFRDQVMQIFRAISL-PQILMYSATIS 325 (533)
Q Consensus 285 i~~vVvDEah~~~~~~~~~~i~~i~~~~~~-~q~i~~SAT~~ 325 (533)
--+||||++|.+.+......+..++.+.+. ..+|+.|-+.|
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 357999999988655556678888888754 45556666643
No 473
>PRK09354 recA recombinase A; Provisional
Probab=88.97 E-value=1.4 Score=44.31 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=29.4
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHH
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELC 223 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~ 223 (533)
.|+-+.|.+|+|||||..++..+.+. . ..+..++|+..-..+-
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~-~---------~~G~~~~yId~E~s~~ 101 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEA-Q---------KAGGTAAFIDAEHALD 101 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H---------HcCCcEEEECCccchH
Confidence 45678999999999998655444333 2 2356688888765554
No 474
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=88.89 E-value=3.4 Score=43.25 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=26.9
Q ss_pred eeEEEEeccchhhhcc-------hHHHHHHHHHhC----CCCcEEEecccCc
Q 009512 285 IRMFVLDEVDCMLQRG-------FRDQVMQIFRAI----SLPQILMYSATIS 325 (533)
Q Consensus 285 i~~vVvDEah~~~~~~-------~~~~i~~i~~~~----~~~q~i~~SAT~~ 325 (533)
-.+|.|||.|.+.... ....+.+++..+ .+.-+|.+.||--
T Consensus 397 PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf 448 (752)
T KOG0734|consen 397 PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF 448 (752)
T ss_pred CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence 4579999999886422 123344555554 5667899999953
No 475
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.77 E-value=0.5 Score=46.00 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=28.8
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHH
Q 009512 170 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTREL 222 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L 222 (533)
..+.+++++|+||||||+. +..++..+-. ...+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~---------~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPP---------EDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHT---------TTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchH-HHHHhhhccc---------cccceEEeccccce
Confidence 3578999999999999984 3444443321 13567887777776
No 476
>CHL00176 ftsH cell division protein; Validated
Probab=88.66 E-value=1.3 Score=48.39 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.3
Q ss_pred CCcEEEEccCCCchhHHH
Q 009512 172 GKSLLVSANTGSGKTASF 189 (533)
Q Consensus 172 g~~vli~a~TGsGKT~~~ 189 (533)
.+.+|+.||+|+|||+.+
T Consensus 216 p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999853
No 477
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=88.56 E-value=9.9 Score=38.10 Aligned_cols=14 Identities=21% Similarity=0.385 Sum_probs=12.1
Q ss_pred EEEEccCCCchhHH
Q 009512 175 LLVSANTGSGKTAS 188 (533)
Q Consensus 175 vli~a~TGsGKT~~ 188 (533)
+-+.++.|+|||+.
T Consensus 59 igi~G~~GaGKSTl 72 (332)
T PRK09435 59 IGITGVPGVGKSTF 72 (332)
T ss_pred EEEECCCCCCHHHH
Confidence 66799999999973
No 478
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.53 E-value=3.8 Score=41.23 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=14.3
Q ss_pred CcEEEEccCCCchhHH
Q 009512 173 KSLLVSANTGSGKTAS 188 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~ 188 (533)
+.+|..+|+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 5699999999999974
No 479
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.48 E-value=3 Score=43.86 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=15.2
Q ss_pred cEEEEccCCCchhHHHHHH
Q 009512 174 SLLVSANTGSGKTASFLVP 192 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp 192 (533)
..|+.||.|+|||..+...
T Consensus 41 a~Lf~Gp~G~GKtt~A~~l 59 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIF 59 (451)
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999865443
No 480
>PHA00012 I assembly protein
Probab=88.47 E-value=6.2 Score=39.04 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=17.5
Q ss_pred EEEEccCCCchhHHHHHHHHHHH
Q 009512 175 LLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 175 vli~a~TGsGKT~~~llp~l~~l 197 (533)
-++.|..|||||+.+..-++..+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L 26 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKL 26 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 47899999999998766555443
No 481
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.37 E-value=1.7 Score=41.75 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=16.4
Q ss_pred hCCCcEEEEccCCCchhH
Q 009512 170 LSGKSLLVSANTGSGKTA 187 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~ 187 (533)
-.|+.+++.++.|+|||+
T Consensus 14 ~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 378899999999999997
No 482
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=88.22 E-value=0.26 Score=34.45 Aligned_cols=24 Identities=46% Similarity=1.006 Sum_probs=20.9
Q ss_pred eeeeecccccccccCcCCcccchHHhHHH
Q 009512 38 KCVICGRYGEYICDETDDDVCSLECKQKL 66 (533)
Q Consensus 38 ~c~~c~~~~~~~~~~~d~d~~~~~~~~~~ 66 (533)
-|++||...+ .|+.+||-+|..-+
T Consensus 10 HC~VCg~aIp-----~de~~CSe~C~eil 33 (64)
T COG4068 10 HCVVCGKAIP-----PDEQVCSEECGEIL 33 (64)
T ss_pred cccccCCcCC-----CccchHHHHHHHHH
Confidence 4999999988 89999999998554
No 483
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=88.13 E-value=0.75 Score=50.49 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=36.6
Q ss_pred CcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHH
Q 009512 173 KSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKL 232 (533)
Q Consensus 173 ~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~ 232 (533)
+++++.||||||||..+++|-+..+ ...++|+=|--|+......+.++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~------------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF------------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC------------CCCEEEEeCCchHHHHHHHHHHh
Confidence 5899999999999999999986532 23488888888887655554444
No 484
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=88.04 E-value=2.9 Score=44.95 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=26.9
Q ss_pred CCCeeEEEEeccchhhhcchHHHHHHHHHh-CCCCcEEEe
Q 009512 282 LDDIRMFVLDEVDCMLQRGFRDQVMQIFRA-ISLPQILMY 320 (533)
Q Consensus 282 l~~i~~vVvDEah~~~~~~~~~~i~~i~~~-~~~~q~i~~ 320 (533)
+..-+++|+|||-.-+|.+.+..+.+.++. ++..-+|-+
T Consensus 531 L~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV 570 (604)
T COG4178 531 LHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISV 570 (604)
T ss_pred HcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEe
Confidence 455679999999998888777666665554 355444443
No 485
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.01 E-value=2 Score=48.27 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=28.8
Q ss_pred cccCcccCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhCCCcEEEEccCCCchhHHH
Q 009512 133 PILSFSSCSLSQKLLQNIEAA---GYDMPTPVQMQAIPSALSGKSLLVSANTGSGKTASF 189 (533)
Q Consensus 133 ~~~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~ 189 (533)
|...|++.+-.+.+.+.|... .+..+.-++... +...+.+|+.||+|+|||+.+
T Consensus 448 ~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 448 PNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 344666666555555555432 111111111100 113456899999999999853
No 486
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=87.97 E-value=1.5 Score=42.42 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=25.6
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcc
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTP 218 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~P 218 (533)
.|.-++|.|++|+|||...+-.+...+. .+.+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~----------~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS----------RGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh----------CCCcEEEEEe
Confidence 4566899999999999855443333221 2556888873
No 487
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=87.95 E-value=1.6 Score=39.87 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=33.8
Q ss_pred CCCcEEEEccCCCchhHHHHHHHHHHHHh-hhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhc
Q 009512 171 SGKSLLVSANTGSGKTASFLVPVISQCAN-IRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGK 235 (533)
Q Consensus 171 ~g~~vli~a~TGsGKT~~~llp~l~~l~~-~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~ 235 (533)
.|.-+++.|++|+|||...+ .+..++.. ..+.......+.++||+..-.. ..++.+.+..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~-~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLAL-QLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHH-HHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHH-HHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 56668999999999998544 44444432 1111111124567888876544 4566677766654
No 488
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.85 E-value=17 Score=33.63 Aligned_cols=145 Identities=15% Similarity=0.198 Sum_probs=72.2
Q ss_pred cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEc---ccHHHHHHHHHH----HHHHhcCCCCeEEEEE-
Q 009512 174 SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLT---PTRELCIQVEEQ----AKLLGKGLPFKTALVV- 245 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~---Ptr~L~~Q~~~~----~~~~~~~~~~~~~~~~- 245 (533)
=+++.++.|+|||...+-.+.-.+. .+.++.+++ ++++...|.... ...+..+ .+....+.
T Consensus 30 L~lIEGd~~tGKSvLsqr~~YG~L~----------~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G-~l~~~~~~~ 98 (235)
T COG2874 30 LILIEGDNGTGKSVLSQRFAYGFLM----------NGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSG-RLLFFPVNL 98 (235)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHh----------CCceEEEEEechhHHHHHHHHHhcCCCchHHHhcc-eeEEEEecc
Confidence 3789999999999865544443332 355677766 455655554321 1111111 11111110
Q ss_pred cCCchHHHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC----CCCcEEEec
Q 009512 246 GGDAMARQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI----SLPQILMYS 321 (533)
Q Consensus 246 gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~----~~~q~i~~S 321 (533)
.+.....+ +-..+++.+.... ...+-+++|+|-...+.-..-...+..++..+ ...++|.+|
T Consensus 99 ~~~~~~~~-------------~~~~~L~~l~~~~-k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilT 164 (235)
T COG2874 99 EPVNWGRR-------------SARKLLDLLLEFI-KRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILT 164 (235)
T ss_pred cccccChH-------------HHHHHHHHHHhhH-HhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 11111100 1112233333221 24566789999998776544333444444443 367899999
Q ss_pred ccC---cHHHHHHHHhhcCCeEEEE
Q 009512 322 ATI---SQEVEKMSSSISKDIVVVS 343 (533)
Q Consensus 322 AT~---~~~~~~~~~~~~~~~~~i~ 343 (533)
+-+ ++++.-..+....-.+.+.
T Consensus 165 vhp~~l~e~~~~rirs~~d~~l~L~ 189 (235)
T COG2874 165 VHPSALDEDVLTRIRSACDVYLRLR 189 (235)
T ss_pred eChhhcCHHHHHHHHHhhheeEEEE
Confidence 865 4444444444443344443
No 489
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=87.84 E-value=0.66 Score=49.14 Aligned_cols=38 Identities=29% Similarity=0.464 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHhCC-C-cEEEEccCCCchhHHHHHHHHHHH
Q 009512 159 TPVQMQAIPSALSG-K-SLLVSANTGSGKTASFLVPVISQC 197 (533)
Q Consensus 159 ~~~Q~~~i~~i~~g-~-~vli~a~TGsGKT~~~llp~l~~l 197 (533)
.+-|.+.+..+... + -++++||||||||+. +..++..+
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 45566666666543 2 368999999999985 33344443
No 490
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=87.84 E-value=3.2 Score=36.06 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=27.1
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhCCCCcEEEecc
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAISLPQILMYSA 322 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~~~~q~i~~SA 322 (533)
.+-.++++||.-.-+|......+...+..+. .+++++.
T Consensus 87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~til~~t 124 (144)
T cd03221 87 ENPNLLLLDEPTNHLDLESIEALEEALKEYP--GTVILVS 124 (144)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--CEEEEEE
Confidence 3456899999998888777777777777763 3444443
No 491
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=87.67 E-value=9.4 Score=41.28 Aligned_cols=134 Identities=18% Similarity=0.215 Sum_probs=73.7
Q ss_pred CHHHHHHHHHHh------CCC-cEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHH
Q 009512 159 TPVQMQAIPSAL------SGK-SLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAK 231 (533)
Q Consensus 159 ~~~Q~~~i~~i~------~g~-~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~ 231 (533)
|--|..|+-.++ +-+ -+-+.|.-|-||+.+.-+.+...+.. .-..+.|..|.-+=..-+++.+-
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~---------GysnIyvtSPspeNlkTlFeFv~ 325 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAF---------GYSNIYVTSPSPENLKTLFEFVF 325 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhc---------CcceEEEcCCChHHHHHHHHHHH
Confidence 567888776554 112 35679999999999877776655542 23346677788765554444322
Q ss_pred HHhcCCCCeEEEEEcCCchHHHHHHHHcCCceeecChHHHHHHHHc-----------------CCCCCCCeeEEEEeccc
Q 009512 232 LLGKGLPFKTALVVGGDAMARQVYRIQQGVELIVGTPGRLIDLLMK-----------------HDIELDDIRMFVLDEVD 294 (533)
Q Consensus 232 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~l~~~l~~-----------------~~~~l~~i~~vVvDEah 294 (533)
+=+..+++... -.++||-.|-.-+...+.+ ....+...+++|+|||-
T Consensus 326 kGfDaL~Yqeh----------------~Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~D~~kl~q~eLlVIDEAA 389 (1011)
T KOG2036|consen 326 KGFDALEYQEH----------------VDYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPHDHQKLGQAELLVIDEAA 389 (1011)
T ss_pred cchhhhcchhh----------------cchhhhhhcChhhhhhEEEEEEeccccceeEeeccchhhhccCCcEEEechhh
Confidence 21122221110 0122332222222111110 11235667899999998
Q ss_pred hhhhcchHHHHHHHHHhCCCCcEEEecccCc
Q 009512 295 CMLQRGFRDQVMQIFRAISLPQILMYSATIS 325 (533)
Q Consensus 295 ~~~~~~~~~~i~~i~~~~~~~q~i~~SAT~~ 325 (533)
.+- .+.+..+ -.+.+++|+.|+.
T Consensus 390 AIP----Lplvk~L----igPylVfmaSTin 412 (1011)
T KOG2036|consen 390 AIP----LPLVKKL----IGPYLVFMASTIN 412 (1011)
T ss_pred cCC----HHHHHHh----hcceeEEEeeccc
Confidence 753 4444443 3678999999974
No 492
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=87.66 E-value=0.93 Score=45.07 Aligned_cols=19 Identities=47% Similarity=0.655 Sum_probs=16.9
Q ss_pred hCCCcEEEEccCCCchhHH
Q 009512 170 LSGKSLLVSANTGSGKTAS 188 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~ 188 (533)
..+.+++++++||||||+.
T Consensus 142 ~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hCCCEEEEECCCCCCHHHH
Confidence 3788999999999999984
No 493
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=87.64 E-value=5.7 Score=44.79 Aligned_cols=31 Identities=35% Similarity=0.648 Sum_probs=20.4
Q ss_pred cChHHHHHHHHcCCCCCCCeeEEEEeccchhhhc
Q 009512 266 GTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQR 299 (533)
Q Consensus 266 ~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~ 299 (533)
+.||++...+..... .. .++++||+|.+...
T Consensus 401 ~~~G~~~~~l~~~~~-~~--~villDEidk~~~~ 431 (784)
T PRK10787 401 SMPGKLIQKMAKVGV-KN--PLFLLDEIDKMSSD 431 (784)
T ss_pred CCCcHHHHHHHhcCC-CC--CEEEEEChhhcccc
Confidence 357777766655332 11 37999999998754
No 494
>PRK07413 hypothetical protein; Validated
Probab=87.60 E-value=4.3 Score=41.13 Aligned_cols=206 Identities=16% Similarity=0.152 Sum_probs=98.0
Q ss_pred CCHHHHHHHHhh----cCceEecCCCCCcccCcccCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCcEEEEccCCCc
Q 009512 109 LTIGQTDSLRKR----LEINVKGDAVPAPILSFSSCSLSQKLLQNIEAAGYDMPTPVQMQAIPSALSGKSLLVSANTGSG 184 (533)
Q Consensus 109 ~~~~~~~~~~~~----~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~i~~g~~vli~a~TGsG 184 (533)
++.+++.++-+. +++-++|...|..+....++-. .++. ..+ |++...=-..-+.-.+.|--..|=|
T Consensus 143 l~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADlVT------Em~~--iKH--p~~~~~~~~~~~~g~i~VYTG~GKG 212 (382)
T PRK07413 143 LPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADLHS------EMRP--HRR--PTASELGVPFNSSGGIEIYTGEGKG 212 (382)
T ss_pred ccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCeeE------Eece--ecC--CCcCCCCcccCCCCeEEEEeCCCCC
Confidence 455665554332 4678899998877766655311 1110 011 1222211111233346777789999
Q ss_pred hhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHH-HHHHHHHHhcCCCC-eEEEEEcCCc-hHHHHHHHHcCC
Q 009512 185 KTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQ-VEEQAKLLGKGLPF-KTALVVGGDA-MARQVYRIQQGV 261 (533)
Q Consensus 185 KT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q-~~~~~~~~~~~~~~-~~~~~~gg~~-~~~~~~~l~~~~ 261 (533)
||++++-.+++.+-.-. ......+++|+.=-+.-... =...++.+....+. -....+|... .... ...
T Consensus 213 KTTAAlGlAlRA~G~G~----~~~~~~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~v~~~~~g~~~~~~~~-----~~~ 283 (382)
T PRK07413 213 KSTSALGKALQAIGRGI----SQDKSHRVLILQWLKGGSGYTEDAAIAALRESYPHLVDHLRSGRDAIVWRG-----QQQ 283 (382)
T ss_pred chHHHHHHHHHHhcCCC----CcccCceEEEEEECCCCCChHHHHHHHHhhhhCCCcEEEEEccCCCceeec-----CCh
Confidence 99998877776653200 00011368887633321000 00112222111121 1111222110 0000 000
Q ss_pred ceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcchH--HHHHHHHHhCCCCcEEEeccc--CcHHHHHHHHh
Q 009512 262 ELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFR--DQVMQIFRAISLPQILMYSAT--ISQEVEKMSSS 334 (533)
Q Consensus 262 ~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~--~~i~~i~~~~~~~q~i~~SAT--~~~~~~~~~~~ 334 (533)
..-.......+...... +.-..+++||+||+-..++.++- ..+..++...+...-|.+|+. .|+++.+++..
T Consensus 284 ~~~~~~a~~~~~~a~~~-i~~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~ADl 359 (382)
T PRK07413 284 PIDYVEAERAWEIARAA-IASGLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLASV 359 (382)
T ss_pred HHHHHHHHHHHHHHHHH-HhCCCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhCch
Confidence 00000112222222221 12346789999999988887744 567777777776666666665 57777666543
No 495
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=87.58 E-value=0.72 Score=47.44 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=28.9
Q ss_pred hCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHH
Q 009512 170 LSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCI 224 (533)
Q Consensus 170 ~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~ 224 (533)
...+++++.|.||||||. ++..++..+.. .+.+++|.=|.-+...
T Consensus 13 ~e~~~~li~G~~GsGKT~-~i~~ll~~~~~---------~g~~~iI~D~kg~~~~ 57 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQ-AIRHLLDQIRA---------RGDRAIIYDPKGEFTE 57 (386)
T ss_dssp GGGG-EEEEE-TTSSHHH-HHHHHHHHHHH---------TT-EEEEEEETTHHHH
T ss_pred hhhCcEEEECCCCCCHHH-HHHHHHHHHHH---------cCCEEEEEECCchHHH
Confidence 456889999999999997 45667766654 2445666666655533
No 496
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=87.49 E-value=1.2 Score=45.83 Aligned_cols=132 Identities=14% Similarity=-0.048 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHhCCCcEEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcC
Q 009512 157 MPTPVQMQAIPSALSGKSLLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKG 236 (533)
Q Consensus 157 ~p~~~Q~~~i~~i~~g~~vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~ 236 (533)
.+-..|.++.-..-.|.. .|.+=.|||||...++-+ .++. .++...+++|.+-|+.|+.++.....+|...
T Consensus 162 nfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Ka-a~lh-------~knPd~~I~~Tfftk~L~s~~r~lv~~F~f~ 232 (660)
T COG3972 162 NFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKA-AELH-------SKNPDSRIAFTFFTKILASTMRTLVPEFFFM 232 (660)
T ss_pred cccchhheeeeecCCchh-hhhcccCCCchhHHHHHH-HHHh-------cCCCCceEEEEeehHHHHHHHHHHHHHHHHH
Confidence 334567776544445554 667889999998533222 2322 2356778999999999999988877766421
Q ss_pred -------CC-CeEEEEEcCCchHHHHHH---HHcCCceeecCh----HHHHHHHHcCCCCCCCeeEEEEeccchhh
Q 009512 237 -------LP-FKTALVVGGDAMARQVYR---IQQGVELIVGTP----GRLIDLLMKHDIELDDIRMFVLDEVDCML 297 (533)
Q Consensus 237 -------~~-~~~~~~~gg~~~~~~~~~---l~~~~~Iiv~Tp----~~l~~~l~~~~~~l~~i~~vVvDEah~~~ 297 (533)
.+ ..+..-.||.+....... ...-..+-++-- .-+..-+....-+..-+++|.+||++-+.
T Consensus 233 ~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDFP 308 (660)
T COG3972 233 RVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDFP 308 (660)
T ss_pred HhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecccccCC
Confidence 11 222333455443322111 111122222211 11111122222236678999999999654
No 497
>PRK13695 putative NTPase; Provisional
Probab=87.34 E-value=4.6 Score=36.22 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=14.1
Q ss_pred cEEEEccCCCchhHHHH
Q 009512 174 SLLVSANTGSGKTASFL 190 (533)
Q Consensus 174 ~vli~a~TGsGKT~~~l 190 (533)
.+++.++.|+|||+.+.
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998544
No 498
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=87.21 E-value=0.78 Score=41.56 Aligned_cols=40 Identities=23% Similarity=0.429 Sum_probs=27.6
Q ss_pred CCeeEEEEeccchhhhcchHHHHHHHHHhC-C-CCcEEEecc
Q 009512 283 DDIRMFVLDEVDCMLQRGFRDQVMQIFRAI-S-LPQILMYSA 322 (533)
Q Consensus 283 ~~i~~vVvDEah~~~~~~~~~~i~~i~~~~-~-~~q~i~~SA 322 (533)
.+-+++++||...-++......+...+..+ . ..++++.|-
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 456789999999988877666666666655 2 245555543
No 499
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=87.20 E-value=8.8 Score=38.04 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=30.8
Q ss_pred HHHHHHHcCCCCCCCeeEEEEeccchhhhcchHHHHHHHHHhC----CCCcEEEecccC
Q 009512 270 RLIDLLMKHDIELDDIRMFVLDEVDCMLQRGFRDQVMQIFRAI----SLPQILMYSATI 324 (533)
Q Consensus 270 ~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~~~~i~~i~~~~----~~~q~i~~SAT~ 324 (533)
.|+..+..+...-+.--++|+||+|....+.....+..++... .+.-++++|..+
T Consensus 123 ~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 123 KLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 3444555544333333578999999876665555555555443 233455555543
No 500
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=87.18 E-value=4.6 Score=36.34 Aligned_cols=134 Identities=9% Similarity=0.120 Sum_probs=70.2
Q ss_pred EEEEccCCCchhHHHHHHHHHHHHhhhhcccCCCCCceEEEEcccHHHHHHHHHHHHHHhcCCCCeEEEEEcCC------
Q 009512 175 LLVSANTGSGKTASFLVPVISQCANIRLHHSQNQKNPLAMVLTPTRELCIQVEEQAKLLGKGLPFKTALVVGGD------ 248 (533)
Q Consensus 175 vli~a~TGsGKT~~~llp~l~~l~~~~~~~~~~~~~~~~Lil~Ptr~L~~Q~~~~~~~~~~~~~~~~~~~~gg~------ 248 (533)
+.|.-..|=|||++++-.+++.+ +.+.+++|+.=-+--... .+...+...-++.... +|..
T Consensus 24 i~VYtGdGKGKTTAAlGlalRAa----------G~G~rV~iiQFlKg~~~~--GE~~~l~~~~~v~~~~-~g~~~~~~~~ 90 (178)
T PRK07414 24 VQVFTSSQRNFFTSVMAQALRIA----------GQGTPVLIVQFLKGGIQQ--GPDRPIQLGQNLDWVR-CDLPRCLDTP 90 (178)
T ss_pred EEEEeCCCCCchHHHHHHHHHHh----------cCCCEEEEEEEecCCCcc--hHHHHHHhCCCcEEEE-CCCCCeeeCC
Confidence 56667789999999887777654 567788888743322111 1111111111222221 1110
Q ss_pred chH-HHHHHHHcCCceeecChHHHHHHHHcCCCCCCCeeEEEEeccchhhhcch--HHHHHHHHHhCCCC-cEEEecccC
Q 009512 249 AMA-RQVYRIQQGVELIVGTPGRLIDLLMKHDIELDDIRMFVLDEVDCMLQRGF--RDQVMQIFRAISLP-QILMYSATI 324 (533)
Q Consensus 249 ~~~-~~~~~l~~~~~Iiv~Tp~~l~~~l~~~~~~l~~i~~vVvDEah~~~~~~~--~~~i~~i~~~~~~~-q~i~~SAT~ 324 (533)
... .... .....+..... .+.-..+++||+||+-...+.++ ...+..+++..+.. -+|+..-..
T Consensus 91 ~~~~~~~~-----------~~~~~~~~a~~-~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~ 158 (178)
T PRK07414 91 HLDESEKK-----------ALQELWQYTQA-VVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM 158 (178)
T ss_pred CcCHHHHH-----------HHHHHHHHHHH-HHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCC
Confidence 100 1111 11112222211 11235688999999998888773 36666777766555 455555556
Q ss_pred cHHHHHHHH
Q 009512 325 SQEVEKMSS 333 (533)
Q Consensus 325 ~~~~~~~~~ 333 (533)
|+++.+++.
T Consensus 159 p~~Lie~AD 167 (178)
T PRK07414 159 PESLLAIAD 167 (178)
T ss_pred CHHHHHhCC
Confidence 776665543
Done!