BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009514
(533 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 11/202 (5%)
Query: 278 LVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXXX 337
LV+LL T + VQ A A++NI + GGV++LV+L S DS
Sbjct: 49 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 108
Query: 338 XXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIF 397
++ K I +L L+ + VQ++A + N+ G +++ I
Sbjct: 109 ALANIASGPDEAIK-AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV 167
Query: 398 AEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI 457
G+ V +L ++ +E++ + L N+A+G S +A++D + +
Sbjct: 168 DAGGV---EVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVE-------VL 217
Query: 458 IKFLQSNDSRLRTAAVWAVLNL 479
K L S DS ++ A A+ N+
Sbjct: 218 QKLLTSTDSEVQKEAQRALENI 239
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 255 RSVSRSIKNLSAG------SFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR 308
+ +R++ N+++G + ++ V LV+LL T + VQ A A++NI T+
Sbjct: 146 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAI 205
Query: 309 STFIRLGGVKLLVQLSKSMDS 329
+ GGV++L +L S DS
Sbjct: 206 KAIVDAGGVEVLQKLLTSTDS 226
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 118/279 (42%), Gaps = 18/279 (6%)
Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
E+++A +++ + + K + + + L S H E + AL ++
Sbjct: 96 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAF 153
Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMN--ETIVI 276
R + + ++ LA D+ + AC LR+++ ++ NL + ++ E I+
Sbjct: 154 RDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 211
Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXX 336
LVRLL V + AIS + R ++ G V LV+L + +
Sbjct: 212 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 271
Query: 337 XXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
+++ ++ I A + SL+ +P+ ++Q++A + N+ GR + ++ +
Sbjct: 272 RAIGNIVTGTDEQTQKVIDAGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 330
Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATG 433
G++ VG + SKA+ + Q + + N +G
Sbjct: 331 V-NHGLVPFLVG----VLSKADFKTQKEAAWAITNYTSG 364
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 91 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 143
Query: 477 LNLTCSSS 484
N+ S
Sbjct: 144 GNIAGDGS 151
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 118/279 (42%), Gaps = 18/279 (6%)
Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
E+++A +++ + + K + + + L S H E + AL ++
Sbjct: 104 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAF 161
Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMN--ETIVI 276
R + + ++ LA D+ + AC LR+++ ++ NL + ++ E I+
Sbjct: 162 RDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 219
Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXX 336
LVRLL V + AIS + R ++ G V LV+L + +
Sbjct: 220 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 279
Query: 337 XXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
+++ ++ I A + SL+ +P+ ++Q++A + N+ GR + ++ +
Sbjct: 280 RAIGNIVTGTDEQTQKVIDAGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 338
Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATG 433
G++ VG + SKA+ + Q + + N +G
Sbjct: 339 V-NHGLVPFLVG----VLSKADFKTQKEAAWAITNYTSG 372
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 99 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 151
Query: 477 LNLTCSSS 484
N+ S
Sbjct: 152 GNIAGDGS 159
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 49/251 (19%), Positives = 96/251 (38%), Gaps = 57/251 (22%)
Query: 278 LVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXXX 337
LV+LL + + AL A+SNI + I G + LVQ
Sbjct: 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ--------------- 103
Query: 338 XXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIF 397
L+ P + ++AL + N+ G ++ +
Sbjct: 104 ----------------------------LLSSPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 398 AEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI 457
D L A+ QL + +I + ++ L N+A+G +AV+D L A +
Sbjct: 136 --DAGALPAL-VQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA-------L 185
Query: 458 IKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLR 517
++ L S + ++ A+WA+ N+ G + + + +AG + ++ + + ++
Sbjct: 186 VQLLSSPNEQILQEALWALSNIAS----GGNEQKQAVKEAGALEKLEQLQSHENEKIQKE 241
Query: 518 VKTALEQFNSF 528
+ ALE+ S
Sbjct: 242 AQEALEKLQSH 252
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 118/279 (42%), Gaps = 18/279 (6%)
Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
E+++A +++ + + K + + + L S H E + AL ++
Sbjct: 70 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAF 127
Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMN--ETIVI 276
R + + ++ LA D+ + AC LR+++ ++ NL + ++ E I+
Sbjct: 128 RDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 185
Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXX 336
LVRLL V + AIS + R ++ G V LV+L + +
Sbjct: 186 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 245
Query: 337 XXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
+++ ++ I A + SL+ +P+ ++Q++A + N+ GR + ++ +
Sbjct: 246 RAIGNIVTGTDEQTQKVIDAGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 304
Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATG 433
G++ VG + SKA+ + Q + + N +G
Sbjct: 305 V-NHGLVPFLVG----VLSKADFKTQKEAAWAITNYTSG 338
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 65 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 117
Query: 477 LNLTCSSS 484
N+ S
Sbjct: 118 GNIAGDGS 125
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 118/279 (42%), Gaps = 18/279 (6%)
Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
E+++A +++ + + K + + + L S H E + AL ++
Sbjct: 65 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAF 122
Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMN--ETIVI 276
R + + ++ LA D+ + AC LR+++ ++ NL + ++ E I+
Sbjct: 123 RDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 180
Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXX 336
LVRLL V + AIS + R ++ G V LV+L + +
Sbjct: 181 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 240
Query: 337 XXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
+++ ++ I A + SL+ +P+ ++Q++A + N+ GR + ++ +
Sbjct: 241 RAIGNIVTGTDEQTQKVIDAGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 299
Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATG 433
G++ VG + SKA+ + Q + + N +G
Sbjct: 300 V-NHGLVPFLVG----VLSKADFKTQKEAAWAITNYTSG 333
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 60 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 112
Query: 477 LNLTCSSS 484
N+ S
Sbjct: 113 GNIAGDGS 120
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 118/279 (42%), Gaps = 18/279 (6%)
Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
E+++A +++ + + K + + + L S H E + AL ++
Sbjct: 65 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAF 122
Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMN--ETIVI 276
R + + ++ LA D+ + AC LR+++ ++ NL + ++ E I+
Sbjct: 123 RDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 180
Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXX 336
LVRLL V + AIS + R ++ G V LV+L + +
Sbjct: 181 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 240
Query: 337 XXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
+++ ++ I A + SL+ +P+ ++Q++A + N+ GR + ++ +
Sbjct: 241 RAIGNIVTGTDEQTQKVIDAGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 299
Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATG 433
G++ VG + SKA+ + Q + + N +G
Sbjct: 300 V-NHGLVPFLVG----VLSKADFKTQKEAAWAITNYTSG 333
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 60 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 112
Query: 477 LNLTCSSS 484
N+ S
Sbjct: 113 GNIAGDGS 120
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 118/279 (42%), Gaps = 18/279 (6%)
Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
E+++A +++ + + K + + + L S H E + AL ++
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAF 177
Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMN--ETIVI 276
R + + ++ LA D+ + AC LR+++ ++ NL + ++ E I+
Sbjct: 178 RDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 235
Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXX 336
LVRLL V + AIS + R ++ G V LV+L + +
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295
Query: 337 XXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
+++ ++ I A + SL+ +P+ ++Q++A + N+ GR + ++ +
Sbjct: 296 RAIGNIVTGTDEQTQKVIDAGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 354
Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATG 433
G++ VG + SKA+ + Q + + N +G
Sbjct: 355 V-NHGLVPFLVG----VLSKADFKTQKEAAWAITNYTSG 388
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 115 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 167
Query: 477 LNLTCSSS 484
N+ S
Sbjct: 168 GNIAGDGS 175
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 118/279 (42%), Gaps = 18/279 (6%)
Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
E+++A +++ + + K + + + L S H E + AL ++
Sbjct: 69 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAF 126
Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMN--ETIVI 276
R + + ++ LA D+ + AC LR+++ ++ NL + ++ E I+
Sbjct: 127 RDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 184
Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXX 336
LVRLL V + AIS + R ++ G V LV+L + +
Sbjct: 185 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 244
Query: 337 XXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
+++ ++ I A + SL+ +P+ ++Q++A + N+ GR + ++ +
Sbjct: 245 RAIGNIVTGTDEQTQKVIDAGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 303
Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATG 433
G++ VG + SKA+ + Q + + N +G
Sbjct: 304 V-NHGLVPFLVG----VLSKADFKTQKEAAWAITNYTSG 337
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 64 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 116
Query: 477 LNLTCSSS 484
N+ S
Sbjct: 117 GNIAGDGS 124
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 118/279 (42%), Gaps = 18/279 (6%)
Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
E+++A +++ + + K + + + L S H E + AL ++
Sbjct: 70 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAF 127
Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMN--ETIVI 276
R + + ++ LA D+ + AC LR+++ ++ NL + ++ E I+
Sbjct: 128 RDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 185
Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXX 336
LVRLL V + AIS + R ++ G V LV+L + +
Sbjct: 186 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 245
Query: 337 XXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
+++ ++ I A + SL+ +P+ ++Q++A + N+ GR + ++ +
Sbjct: 246 RAIGNIVTGTDEQTQKVIDAGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 304
Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATG 433
G++ VG + SKA+ + Q + + N +G
Sbjct: 305 V-NHGLVPFLVG----VLSKADFKTQKEAAWAITNYTSG 338
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 65 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 117
Query: 477 LNLTCSSS 484
N+ S
Sbjct: 118 GNIAGDGS 125
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 118/279 (42%), Gaps = 18/279 (6%)
Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
E+++A +++ + + K + + + L S H E + AL ++
Sbjct: 69 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAF 126
Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMN--ETIVI 276
R + + ++ LA D+ + AC LR+++ ++ NL + ++ E I+
Sbjct: 127 RDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 184
Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXX 336
LVRLL V + AIS + R ++ G V LV+L + +
Sbjct: 185 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 244
Query: 337 XXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
+++ ++ I A + SL+ +P+ ++Q++A + N+ GR + ++ +
Sbjct: 245 RAIGNIVTGTDEQTQKVIDAGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 303
Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATG 433
G++ VG + SKA+ + Q + + N +G
Sbjct: 304 V-NHGLVPFLVG----VLSKADFKTQKEAAWAITNYTSG 337
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 64 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 116
Query: 477 LNLTCSSS 484
N+ S
Sbjct: 117 GNIAGDGS 124
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 118/279 (42%), Gaps = 18/279 (6%)
Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
E+++A +++ + + K + + + L S H E + AL ++
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAF 177
Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMN--ETIVI 276
R + + ++ LA D+ + AC LR+++ ++ NL + ++ E I+
Sbjct: 178 RDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 235
Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXX 336
LVRLL V + AIS + R ++ G V LV+L + +
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295
Query: 337 XXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
+++ ++ I A + SL+ +P+ ++Q++A + N+ GR + ++ +
Sbjct: 296 RAIGNIVTGTDEQTQKVIDAGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 354
Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATG 433
G++ VG + SKA+ + Q + + N +G
Sbjct: 355 V-NHGLVPFLVG----VLSKADFKTQKEAAWAITNYTSG 388
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 115 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 167
Query: 477 LNLTCSSS 484
N+ S
Sbjct: 168 GNIAGDGS 175
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 118/279 (42%), Gaps = 18/279 (6%)
Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
E+++A +++ + + K + + + L S H E + AL ++
Sbjct: 106 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAF 163
Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMN--ETIVI 276
R + + ++ LA D+ + AC LR+++ ++ NL + ++ E I+
Sbjct: 164 RDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 221
Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXX 336
LVRLL V + AIS + R ++ G V LV+L + +
Sbjct: 222 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 281
Query: 337 XXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
+++ ++ I A + SL+ +P+ ++Q++A + N+ GR + ++ +
Sbjct: 282 RAIGNIVTGTDEQTQKVIDAGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 340
Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATG 433
G++ VG + SKA+ + Q + + N +G
Sbjct: 341 V-NHGLVPFLVG----VLSKADFKTQKEAAWAITNYTSG 374
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 101 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 153
Query: 477 LNLTCSSS 484
N+ S
Sbjct: 154 GNIAGDGS 161
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 118/279 (42%), Gaps = 18/279 (6%)
Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
E+++A +++ + + K + + + L S H E + AL ++
Sbjct: 70 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAF 127
Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMN--ETIVI 276
R + + ++ LA D+ + AC LR+++ ++ NL + ++ E I+
Sbjct: 128 RDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 185
Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXX 336
LVRLL V + AIS + R ++ G V LV+L + +
Sbjct: 186 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 245
Query: 337 XXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
+++ ++ I A + SL+ +P+ ++Q++A + N+ GR + ++ +
Sbjct: 246 RAIGNIVTGTDEQTQKVIDAGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 304
Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATG 433
G++ VG + SKA+ + Q + + N +G
Sbjct: 305 -VNHGLVPFLVG----VLSKADFKTQKEAAWAITNYTSG 338
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 65 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 117
Query: 477 LNLTCSSS 484
N+ S
Sbjct: 118 GNIAGDGS 125
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 118/279 (42%), Gaps = 18/279 (6%)
Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
E+++A +++ + + K + + + L S H E + AL ++
Sbjct: 76 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAF 133
Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMN--ETIVI 276
R + + ++ LA D+ + AC LR+++ ++ NL + ++ E I+
Sbjct: 134 RDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 191
Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXX 336
LVRLL V + AIS + R ++ G V LV+L + +
Sbjct: 192 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 251
Query: 337 XXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
+++ ++ I A + SL+ +P+ ++Q++A + N+ GR + ++ +
Sbjct: 252 RAIGNIVTGTDEQTQKVIDAGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 310
Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATG 433
G++ VG + SKA+ + Q + + N +G
Sbjct: 311 -VNHGLVPFLVG----VLSKADFKTQKEAAWAITNYTSG 344
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 71 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 123
Query: 477 LNLTCSSS 484
N+ S
Sbjct: 124 GNIAGDGS 131
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 118/279 (42%), Gaps = 18/279 (6%)
Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
E+++A +++ + + K + + + L S H E + AL ++
Sbjct: 120 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGDGSAF 177
Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMN--ETIVI 276
R + + ++ LA D+ + AC LR+++ ++ NL + ++ E I+
Sbjct: 178 RDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 235
Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXX 336
LVRLL V + AIS + R ++ G V LV+L + +
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 295
Query: 337 XXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
+++ ++ I A + SL+ +P+ ++Q++A + N+ GR + ++ +
Sbjct: 296 RAIGNIVTGTDEQTQKVIDAGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 354
Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATG 433
G++ VG + SKA+ + Q + + N +G
Sbjct: 355 V-NHGLVPFLVG----VLSKADFKTQKEAAWAITNYTSG 388
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 115 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 167
Query: 477 LNLTCSSS 484
N+ S
Sbjct: 168 GNIAGDGS 175
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 118/279 (42%), Gaps = 18/279 (6%)
Query: 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222
E+++A +++ + + K + + + L S H E + AL ++
Sbjct: 139 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLL--ASPHAHISEQAVWALGNIAGAGSAF 196
Query: 223 RSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL----SAGSFMN--ETIVI 276
R + + ++ LA D+ + AC LR+++ ++ NL + ++ E I+
Sbjct: 197 RDLVIKHGAIDPLLALLA--VPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 254
Query: 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTXXXXXX 336
LVRLL V + AIS + R ++ G V LV+L + +
Sbjct: 255 TLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL 314
Query: 337 XXXXXXXXXXEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396
+++ ++ I A + SL+ +P+ ++Q++A + N+ GR + ++ +
Sbjct: 315 RAIGNIVTGTDEQTQKVIDAGALA-VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 373
Query: 397 FAEDGIILDAVGRQLRIASKAEIEIQ--GMYVLGNVATG 433
G++ VG + SKA+ + Q + + N +G
Sbjct: 374 V-NHGLVPFLVG----VLSKADFKTQKAAAWAITNYTSG 407
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 134 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 186
Query: 477 LNLTCSSS 484
N+ + S
Sbjct: 187 GNIAGAGS 194
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 28/152 (18%)
Query: 363 LASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI--ILDAVGRQLRIASKAEIE 420
L L+ P PSV AL V N+V G + I + +L + + L K I+
Sbjct: 291 LVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL----KKSIK 346
Query: 421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480
+ + + N+ G + +AV++ ++ ++ LQ+ + ++ A WA+ N T
Sbjct: 347 KEACWTISNITAGNKDQIQAVINAGII-------GPLVNLLQTAEFDIKKEAAWAISNAT 399
Query: 481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL 512
S HD +K +V++ C+
Sbjct: 400 SGGS----------HD-----QIKYLVSEGCI 416
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 418 EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL 477
+++ + + L N+A+G + + V+D + A +K L S+ +R AVWA+
Sbjct: 133 QLQFEAAWALTNIASGTSENTKVVID-------HGAVPIFVKLLGSSSDDVREQAVWALG 185
Query: 478 NLTCSS 483
N+ S
Sbjct: 186 NVAGDS 191
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 28/152 (18%)
Query: 363 LASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI--ILDAVGRQLRIASKAEIE 420
L L+ P PSV AL V N+V G + I + +L + + L K I+
Sbjct: 253 LVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL----KKSIK 308
Query: 421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480
+ + + N+ G + +AV++ ++ ++ LQ+ + ++ A WA+ N T
Sbjct: 309 KEACWTISNITAGNKDQIQAVINAGII-------GPLVNLLQTAEFDIKKEAAWAISNAT 361
Query: 481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL 512
S HD +K +V++ C+
Sbjct: 362 SGGS----------HD-----QIKYLVSEGCI 378
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 418 EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL 477
+++ + + L N+A+G + + V+D + A +K L S+ +R AVWA+
Sbjct: 95 QLQFEAAWALTNIASGTSENTKVVID-------HGAVPIFVKLLGSSSDDVREQAVWALG 147
Query: 478 NLTCSS 483
N+ S
Sbjct: 148 NVAGDS 153
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 422 QGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481
+ ++ L N+A+G +AV+D L A +++ L S + ++ A+WA+ N+
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPA-------LVQLLSSPNEQILQEALWALSNIAS 125
Query: 482 SSSPGSSGRLVKLHDAGIVSHVKNMVNDP 510
G + ++ + DAG + + +++ P
Sbjct: 126 ----GGNEQIQAVIDAGALPALVQLLSSP 150
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 422 QGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481
+ ++ L N+A+G +AV+D L A +++ L S + ++ A+WA+ N+
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPA-------LVQLLSSPNEQILQEALWALSNIAS 125
Query: 482 SSSPGSSGRLVKLHDAGIVSHVKNMVNDP 510
G + ++ + DAG + + +++ P
Sbjct: 126 ----GGNEQIQAVIDAGALPALVQLLSSP 150
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476
+ I+ + + L N+A+G +AV+D A I L S + + AVWA+
Sbjct: 66 SPIQFESAWALTNIASGTSEQTKAVVD-------GGAIPAFISLLASPHAHISEQAVWAL 118
Query: 477 LNLTCSSS 484
N+ S
Sbjct: 119 GNIAGDGS 126
>pdb|3C5I|A Chain A, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|B Chain B, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|C Chain C, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
pdb|3C5I|D Chain D, Crystal Structure Of Plasmodium Knowlesi Choline Kinase,
Pkh_134520
Length = 369
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 23/29 (79%)
Query: 268 SFMNETIVIPLVRLLDDTSTAVQVAALGA 296
+++++++V+P +L+D+ AV+V ALGA
Sbjct: 290 NYLDKSLVVPTPKLIDEILEAVEVQALGA 318
>pdb|1XM9|A Chain A, Structure Of The Armadillo Repeat Domain Of Plakophilin 1
Length = 457
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 347 EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA 406
++ K++++ L L+ P +VQ+ A +RNLV + ++G I +A
Sbjct: 33 DESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNG-IREA 91
Query: 407 VGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAE 450
V LR AEI+ Q +L N+++ E +E + D L + A+
Sbjct: 92 VSL-LRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLAD 134
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 275 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL 323
+ LV LL + VQ AA GA+ N+V TT + R G++ V L
Sbjct: 46 ICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSL 94
>pdb|2D2I|A Chain A, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|B Chain B, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|O Chain O, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|P Chain P, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|Q Chain Q, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2D2I|R Chain R, Crystal Structure Of Nadp-Dependent Glyceraldehyde-3-
Phosphate Dehydrogenase From Synechococcus Sp. Complexed
With Nadp+
pdb|2DUU|A Chain A, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|B Chain B, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|O Chain O, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|P Chain P, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|Q Chain Q, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp.
pdb|2DUU|R Chain R, Crystal Structure Of Apo-Form Of Nadp-Dependent
Glyceraldehyde-3- Phosphate Dehydrogenase From
Synechococcus Sp
Length = 380
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 419 IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLN 478
IE G++V A G H +A ++L+ A KA+ + NDS R + N
Sbjct: 96 IESTGVFV---TAEGASKHIQAGAKKVLITAPGKAEGVGTYVIGVNDSEYRHEDFAVISN 152
Query: 479 LTCSSS 484
+C+++
Sbjct: 153 ASCTTN 158
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 28.5 bits (62), Expect = 9.4, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 236 VDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS 268
+ A A ++D R AC CL++ +R IK L+AG+
Sbjct: 34 LKAAASTTAD-RRTACNCLKNAARGIKGLNAGN 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,165,164
Number of Sequences: 62578
Number of extensions: 421255
Number of successful extensions: 1206
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1119
Number of HSP's gapped (non-prelim): 97
length of query: 533
length of database: 14,973,337
effective HSP length: 103
effective length of query: 430
effective length of database: 8,527,803
effective search space: 3666955290
effective search space used: 3666955290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)