Query 009514
Match_columns 533
No_of_seqs 215 out of 2523
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 14:02:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 8E-47 1.7E-51 416.3 49.4 501 13-531 95-727 (2102)
2 PLN03200 cellulose synthase-in 100.0 3.3E-45 7.1E-50 403.6 50.6 502 16-529 57-682 (2102)
3 KOG0166 Karyopherin (importin) 100.0 1.2E-41 2.7E-46 329.4 32.5 369 104-531 68-440 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 1.5E-40 3.2E-45 297.9 22.0 372 102-530 71-446 (526)
5 KOG0166 Karyopherin (importin) 100.0 2.4E-34 5.2E-39 278.9 30.0 322 189-529 69-395 (514)
6 COG5064 SRP1 Karyopherin (impo 100.0 4.5E-34 9.8E-39 256.3 20.2 321 188-526 73-397 (526)
7 KOG4224 Armadillo repeat prote 100.0 4.9E-32 1.1E-36 245.4 24.0 403 16-434 84-495 (550)
8 KOG4224 Armadillo repeat prote 100.0 1.4E-30 3.1E-35 235.9 26.3 402 101-529 84-495 (550)
9 KOG1293 Proteins containing ar 99.9 6E-25 1.3E-29 214.4 30.8 511 3-523 125-669 (678)
10 PF05804 KAP: Kinesin-associat 99.9 2.5E-20 5.4E-25 191.9 41.3 478 16-530 163-652 (708)
11 PF05804 KAP: Kinesin-associat 99.9 1.4E-19 2.9E-24 186.5 39.1 400 19-441 252-658 (708)
12 KOG4500 Rho/Rac GTPase guanine 99.8 8.1E-17 1.8E-21 150.1 25.8 471 24-509 49-553 (604)
13 KOG2023 Nuclear transport rece 99.8 2.2E-16 4.7E-21 154.5 27.8 494 2-527 112-775 (885)
14 KOG2171 Karyopherin (importin) 99.7 3.5E-14 7.7E-19 148.3 39.6 434 21-481 84-549 (1075)
15 KOG1048 Neural adherens juncti 99.7 5.4E-16 1.2E-20 156.3 24.1 363 102-480 233-683 (717)
16 KOG4199 Uncharacterized conser 99.7 9.5E-16 2.1E-20 138.7 23.2 293 10-344 138-444 (461)
17 KOG2023 Nuclear transport rece 99.7 1.9E-16 4E-21 154.9 19.9 440 56-530 8-508 (885)
18 KOG4199 Uncharacterized conser 99.7 4.1E-15 8.8E-20 134.7 26.3 305 159-481 122-444 (461)
19 KOG2171 Karyopherin (importin) 99.7 9.5E-14 2.1E-18 145.1 38.2 472 18-530 5-507 (1075)
20 PF01602 Adaptin_N: Adaptin N 99.7 5.1E-14 1.1E-18 147.6 35.8 445 17-526 42-523 (526)
21 KOG1048 Neural adherens juncti 99.7 1.4E-14 3E-19 146.2 29.0 400 14-431 230-683 (717)
22 KOG1293 Proteins containing ar 99.7 1.9E-14 4.2E-19 141.5 28.9 487 22-530 15-536 (678)
23 PF10508 Proteasom_PSMB: Prote 99.7 1.8E-13 4E-18 140.1 35.8 395 19-429 40-462 (503)
24 PRK09687 putative lyase; Provi 99.7 8.6E-15 1.9E-19 137.5 23.9 255 186-524 23-279 (280)
25 COG5369 Uncharacterized conser 99.7 1.1E-15 2.5E-20 146.0 15.6 275 244-526 403-740 (743)
26 PF10508 Proteasom_PSMB: Prote 99.7 2.5E-12 5.4E-17 131.7 41.1 395 106-517 42-452 (503)
27 KOG2122 Beta-catenin-binding p 99.7 1.3E-14 2.8E-19 152.5 22.9 359 109-481 201-601 (2195)
28 KOG2122 Beta-catenin-binding p 99.7 6.5E-14 1.4E-18 147.4 27.3 379 20-434 200-603 (2195)
29 PRK09687 putative lyase; Provi 99.6 1.5E-13 3.2E-18 129.2 21.7 225 231-526 24-249 (280)
30 PRK13800 putative oxidoreducta 99.6 3.4E-13 7.4E-18 147.9 27.1 277 143-524 619-896 (897)
31 KOG1241 Karyopherin (importin) 99.6 3.3E-12 7.1E-17 127.6 30.6 470 17-510 129-692 (859)
32 KOG4500 Rho/Rac GTPase guanine 99.6 3.1E-12 6.8E-17 119.9 27.7 437 70-525 55-517 (604)
33 PRK13800 putative oxidoreducta 99.6 1.4E-12 3E-17 143.2 29.8 274 103-478 622-896 (897)
34 PF04826 Arm_2: Armadillo-like 99.5 1.2E-12 2.5E-17 120.2 19.5 195 11-217 6-205 (254)
35 PF01602 Adaptin_N: Adaptin N 99.5 2E-11 4.4E-16 128.0 30.3 401 18-479 80-522 (526)
36 PF04826 Arm_2: Armadillo-like 99.5 2.4E-12 5.1E-17 118.2 19.1 227 184-422 10-252 (254)
37 KOG0168 Putative ubiquitin fus 99.5 2.2E-11 4.8E-16 123.0 26.8 394 103-512 168-657 (1051)
38 PTZ00429 beta-adaptin; Provisi 99.5 1.5E-09 3.2E-14 114.5 41.7 433 17-525 105-544 (746)
39 KOG1241 Karyopherin (importin) 99.5 3.4E-10 7.3E-15 113.6 32.5 432 60-529 4-479 (859)
40 COG5215 KAP95 Karyopherin (imp 99.5 4.5E-10 9.8E-15 109.0 31.7 470 17-510 133-692 (858)
41 PTZ00429 beta-adaptin; Provisi 99.4 3E-09 6.5E-14 112.1 38.9 349 70-481 118-471 (746)
42 cd00020 ARM Armadillo/beta-cat 99.4 2.7E-12 5.7E-17 105.8 12.5 118 225-343 2-119 (120)
43 cd00020 ARM Armadillo/beta-cat 99.4 1.3E-11 2.8E-16 101.7 13.9 118 269-387 3-120 (120)
44 KOG1222 Kinesin associated pro 99.3 9.3E-09 2E-13 98.2 29.7 389 31-443 277-674 (791)
45 cd00256 VATPase_H VATPase_H, r 99.3 5E-09 1.1E-13 102.7 26.4 323 145-480 53-424 (429)
46 KOG1222 Kinesin associated pro 99.2 5.8E-08 1.2E-12 92.9 31.7 390 71-495 277-673 (791)
47 KOG0213 Splicing factor 3b, su 99.2 1.4E-07 3E-12 94.8 31.9 448 15-526 634-1106(1172)
48 COG5215 KAP95 Karyopherin (imp 99.1 2.1E-07 4.6E-12 90.9 30.0 305 18-345 95-438 (858)
49 KOG0168 Putative ubiquitin fus 99.1 1.4E-08 3.1E-13 103.1 22.4 259 188-462 169-436 (1051)
50 cd00256 VATPase_H VATPase_H, r 99.1 4.4E-08 9.5E-13 96.1 24.7 316 16-343 52-424 (429)
51 KOG0946 ER-Golgi vesicle-tethe 99.1 4.4E-06 9.6E-11 85.0 39.0 435 16-463 21-535 (970)
52 KOG1059 Vesicle coat complex A 99.1 7.1E-07 1.5E-11 89.7 32.4 247 63-344 149-401 (877)
53 KOG0212 Uncharacterized conser 99.0 1.8E-06 3.9E-11 84.6 30.2 353 101-480 83-443 (675)
54 KOG1062 Vesicle coat complex A 99.0 1.7E-06 3.7E-11 88.2 30.6 398 26-474 116-574 (866)
55 KOG2160 Armadillo/beta-catenin 99.0 5.1E-08 1.1E-12 91.1 18.1 189 195-386 90-281 (342)
56 KOG1062 Vesicle coat complex A 99.0 9.6E-06 2.1E-10 82.9 34.7 386 71-526 121-543 (866)
57 KOG0211 Protein phosphatase 2A 98.9 5.3E-07 1.1E-11 94.5 26.3 391 108-526 243-663 (759)
58 COG5181 HSH155 U2 snRNP splice 98.9 1E-06 2.2E-11 87.0 25.6 452 16-527 440-912 (975)
59 KOG1242 Protein containing ada 98.9 9.3E-06 2E-10 81.2 32.6 368 71-481 70-444 (569)
60 KOG1824 TATA-binding protein-i 98.9 7.6E-06 1.7E-10 84.8 31.7 426 22-483 573-1038(1233)
61 KOG0213 Splicing factor 3b, su 98.9 4.8E-06 1E-10 84.0 29.5 462 18-527 554-1065(1172)
62 KOG1060 Vesicle coat complex A 98.9 4E-06 8.7E-11 85.2 28.4 329 106-481 147-533 (968)
63 KOG2160 Armadillo/beta-catenin 98.9 1.8E-07 3.9E-12 87.5 17.7 187 114-304 95-284 (342)
64 KOG1824 TATA-binding protein-i 98.8 1E-05 2.2E-10 84.0 30.7 480 15-530 45-603 (1233)
65 TIGR02270 conserved hypothetic 98.8 1.8E-06 3.9E-11 85.4 24.6 242 186-526 54-295 (410)
66 KOG0946 ER-Golgi vesicle-tethe 98.8 1.8E-05 3.9E-10 80.7 30.8 334 102-443 22-410 (970)
67 COG5240 SEC21 Vesicle coat com 98.8 3.9E-05 8.4E-10 75.6 31.9 402 62-526 105-554 (898)
68 KOG0211 Protein phosphatase 2A 98.8 1.2E-05 2.5E-10 84.6 28.5 232 101-344 275-508 (759)
69 KOG2759 Vacuolar H+-ATPase V1 98.7 1.3E-05 2.9E-10 76.3 25.4 279 188-480 116-437 (442)
70 PF03224 V-ATPase_H_N: V-ATPas 98.7 2.4E-06 5.3E-11 82.6 20.6 215 113-332 68-302 (312)
71 PF03224 V-ATPase_H_N: V-ATPas 98.7 1.8E-06 4E-11 83.5 19.7 208 188-400 57-283 (312)
72 KOG1060 Vesicle coat complex A 98.7 0.00012 2.7E-09 74.8 32.7 390 19-481 37-458 (968)
73 KOG2759 Vacuolar H+-ATPase V1 98.7 1E-05 2.2E-10 77.1 22.2 320 16-344 64-438 (442)
74 COG5369 Uncharacterized conser 98.6 2E-06 4.3E-11 83.8 17.2 183 206-389 407-596 (743)
75 KOG3678 SARM protein (with ste 98.6 4.6E-06 1E-10 79.9 19.2 279 222-528 172-453 (832)
76 KOG3678 SARM protein (with ste 98.6 4.3E-06 9.2E-11 80.1 19.0 274 181-480 175-451 (832)
77 KOG1061 Vesicle coat complex A 98.6 2.1E-05 4.4E-10 80.6 25.0 336 103-479 122-487 (734)
78 KOG1242 Protein containing ada 98.6 8.8E-05 1.9E-09 74.4 28.7 454 11-516 90-553 (569)
79 KOG0212 Uncharacterized conser 98.5 4.5E-05 9.7E-10 75.1 23.9 319 142-481 81-406 (675)
80 KOG1061 Vesicle coat complex A 98.5 3.2E-05 6.9E-10 79.2 23.7 410 16-481 12-453 (734)
81 KOG1059 Vesicle coat complex A 98.5 0.00017 3.6E-09 73.2 27.7 215 105-344 147-365 (877)
82 KOG4535 HEAT and armadillo rep 98.5 0.00017 3.6E-09 69.8 26.0 449 15-483 44-605 (728)
83 COG5181 HSH155 U2 snRNP splice 98.5 9.5E-05 2.1E-09 73.5 24.9 335 103-481 605-946 (975)
84 TIGR02270 conserved hypothetic 98.5 2.9E-05 6.2E-10 77.0 21.6 212 230-526 54-266 (410)
85 KOG4413 26S proteasome regulat 98.4 0.00044 9.6E-09 63.8 26.1 280 16-302 81-377 (524)
86 KOG1517 Guanine nucleotide bin 98.4 1.5E-05 3.2E-10 83.6 17.4 224 119-344 487-732 (1387)
87 PF14664 RICTOR_N: Rapamycin-i 98.4 0.00017 3.7E-09 70.7 24.0 285 232-533 27-370 (371)
88 COG1413 FOG: HEAT repeat [Ener 98.4 0.00016 3.6E-09 71.0 24.0 246 17-343 43-303 (335)
89 KOG4413 26S proteasome regulat 98.4 0.00025 5.4E-09 65.4 22.7 378 59-478 79-481 (524)
90 KOG1077 Vesicle coat complex A 98.3 0.0051 1.1E-07 62.7 35.1 333 20-387 77-433 (938)
91 COG1413 FOG: HEAT repeat [Ener 98.3 0.00021 4.6E-09 70.2 23.5 185 187-431 44-241 (335)
92 KOG0915 Uncharacterized conser 98.3 0.0037 8E-08 69.0 33.3 306 204-529 973-1308(1702)
93 KOG1789 Endocytosis protein RM 98.3 0.00039 8.4E-09 73.3 25.0 341 17-370 1771-2142(2235)
94 PF05536 Neurochondrin: Neuroc 98.3 0.0067 1.4E-07 63.0 34.2 232 60-303 7-262 (543)
95 KOG1943 Beta-tubulin folding c 98.3 0.0033 7.1E-08 67.1 31.4 376 17-431 341-746 (1133)
96 KOG4535 HEAT and armadillo rep 98.3 0.00087 1.9E-08 65.0 25.0 465 31-524 10-600 (728)
97 PF12348 CLASP_N: CLASP N term 98.2 3.1E-05 6.6E-10 71.6 13.7 187 198-391 17-210 (228)
98 KOG2973 Uncharacterized conser 98.2 0.00086 1.9E-08 61.6 21.8 267 232-519 5-307 (353)
99 KOG4646 Uncharacterized conser 98.2 5E-05 1.1E-09 60.6 12.0 120 271-393 14-134 (173)
100 KOG1240 Protein kinase contain 98.2 0.00013 2.7E-09 78.1 18.1 297 104-432 424-725 (1431)
101 KOG0915 Uncharacterized conser 98.2 0.0058 1.3E-07 67.5 30.9 310 17-344 998-1344(1702)
102 KOG1078 Vesicle coat complex C 98.1 0.013 2.8E-07 60.7 31.5 272 229-527 244-532 (865)
103 KOG1517 Guanine nucleotide bin 98.1 9.6E-05 2.1E-09 77.8 16.8 226 162-390 488-735 (1387)
104 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00093 2E-08 65.6 22.7 238 143-388 23-270 (371)
105 KOG2259 Uncharacterized conser 98.1 0.00011 2.4E-09 73.7 15.9 290 107-433 203-512 (823)
106 KOG1077 Vesicle coat complex A 98.1 0.016 3.5E-07 59.2 32.3 336 18-387 112-488 (938)
107 KOG2259 Uncharacterized conser 98.1 0.00023 5.1E-09 71.5 17.1 220 104-342 236-473 (823)
108 PF13646 HEAT_2: HEAT repeats; 98.1 2.2E-05 4.8E-10 60.2 8.2 86 232-340 1-88 (88)
109 PF13513 HEAT_EZ: HEAT-like re 98.1 1.7E-05 3.7E-10 54.6 6.7 55 417-479 1-55 (55)
110 KOG4646 Uncharacterized conser 98.1 4.6E-05 9.9E-10 60.8 9.6 135 186-324 16-150 (173)
111 KOG1943 Beta-tubulin folding c 98.0 0.026 5.5E-07 60.7 32.2 313 103-432 342-705 (1133)
112 PF00514 Arm: Armadillo/beta-c 98.0 1.3E-05 2.8E-10 51.3 5.2 40 220-259 2-41 (41)
113 KOG1240 Protein kinase contain 98.0 0.0015 3.2E-08 70.3 22.0 295 62-388 426-726 (1431)
114 PF00514 Arm: Armadillo/beta-c 98.0 1.7E-05 3.8E-10 50.7 5.0 39 305-343 2-40 (41)
115 KOG2973 Uncharacterized conser 98.0 0.0061 1.3E-07 56.1 22.9 274 103-389 4-317 (353)
116 KOG1789 Endocytosis protein RM 97.9 0.0046 9.9E-08 65.7 24.0 363 120-510 1743-2142(2235)
117 KOG1020 Sister chromatid cohes 97.9 0.066 1.4E-06 59.7 35.4 109 17-135 816-925 (1692)
118 PF13646 HEAT_2: HEAT repeats; 97.9 3.2E-05 6.8E-10 59.4 6.5 87 317-428 1-88 (88)
119 PF12460 MMS19_C: RNAPII trans 97.9 0.019 4E-07 58.1 28.1 347 19-391 1-398 (415)
120 KOG1058 Vesicle coat complex C 97.9 0.0035 7.6E-08 64.3 21.7 307 110-480 107-424 (948)
121 KOG0567 HEAT repeat-containing 97.9 0.0021 4.6E-08 57.8 17.6 89 403-525 188-278 (289)
122 PF05536 Neurochondrin: Neuroc 97.8 0.0027 5.9E-08 65.8 21.2 238 188-431 7-260 (543)
123 KOG2734 Uncharacterized conser 97.8 0.0069 1.5E-07 58.5 20.9 220 101-323 124-369 (536)
124 PF12348 CLASP_N: CLASP N term 97.8 0.0012 2.6E-08 60.9 16.0 180 283-481 17-206 (228)
125 KOG2032 Uncharacterized conser 97.8 0.011 2.3E-07 58.1 22.2 262 233-527 261-531 (533)
126 KOG1058 Vesicle coat complex C 97.7 0.007 1.5E-07 62.2 21.2 322 103-481 135-463 (948)
127 KOG1991 Nuclear transport rece 97.7 0.039 8.5E-07 58.8 26.8 280 186-481 410-711 (1010)
128 KOG0567 HEAT repeat-containing 97.7 0.0048 1E-07 55.6 17.4 197 230-481 67-280 (289)
129 PF13513 HEAT_EZ: HEAT-like re 97.7 0.0001 2.3E-09 50.6 5.3 55 287-342 1-55 (55)
130 COG5096 Vesicle coat complex, 97.5 0.0063 1.4E-07 64.0 17.3 167 324-527 28-195 (757)
131 PF10165 Ric8: Guanine nucleot 97.5 0.027 5.8E-07 57.2 21.4 239 240-481 42-337 (446)
132 PF11841 DUF3361: Domain of un 97.5 0.0053 1.1E-07 51.6 13.4 132 224-357 5-144 (160)
133 COG5240 SEC21 Vesicle coat com 97.4 0.16 3.5E-06 51.1 32.4 318 114-480 202-554 (898)
134 PF12755 Vac14_Fab1_bd: Vacuol 97.4 0.0011 2.4E-08 51.3 8.2 93 420-526 3-95 (97)
135 PF10165 Ric8: Guanine nucleot 97.4 0.068 1.5E-06 54.3 23.1 267 251-527 2-337 (446)
136 PF12755 Vac14_Fab1_bd: Vacuol 97.3 0.0014 3.1E-08 50.6 8.3 92 205-300 3-94 (97)
137 PF12717 Cnd1: non-SMC mitotic 97.3 0.021 4.5E-07 50.2 16.7 93 286-388 1-93 (178)
138 PF12460 MMS19_C: RNAPII trans 97.3 0.27 5.8E-06 49.8 27.2 345 147-531 1-398 (415)
139 PF12717 Cnd1: non-SMC mitotic 97.2 0.044 9.5E-07 48.2 17.5 92 202-303 2-93 (178)
140 smart00185 ARM Armadillo/beta- 97.2 0.00098 2.1E-08 42.4 5.3 38 306-343 3-40 (41)
141 PF11841 DUF3361: Domain of un 97.2 0.0076 1.6E-07 50.6 11.7 121 269-391 7-135 (160)
142 KOG1078 Vesicle coat complex C 97.2 0.39 8.4E-06 50.3 29.4 54 415-480 478-531 (865)
143 smart00185 ARM Armadillo/beta- 97.2 0.00092 2E-08 42.5 4.7 39 221-259 3-41 (41)
144 KOG2062 26S proteasome regulat 97.1 0.034 7.5E-07 57.2 17.4 155 322-514 526-681 (929)
145 KOG1248 Uncharacterized conser 97.1 0.64 1.4E-05 51.1 29.1 224 284-525 665-896 (1176)
146 COG5096 Vesicle coat complex, 97.1 0.56 1.2E-05 49.9 30.4 164 26-216 28-194 (757)
147 PF09759 Atx10homo_assoc: Spin 97.1 0.003 6.5E-08 48.9 7.5 68 161-228 3-70 (102)
148 PF05918 API5: Apoptosis inhib 97.0 0.13 2.8E-06 52.7 20.9 301 62-392 27-350 (556)
149 COG5231 VMA13 Vacuolar H+-ATPa 97.0 0.045 9.7E-07 50.8 15.7 234 237-480 156-427 (432)
150 PF05004 IFRD: Interferon-rela 96.9 0.2 4.2E-06 48.3 20.3 188 278-480 48-256 (309)
151 COG5231 VMA13 Vacuolar H+-ATPa 96.9 0.15 3.3E-06 47.4 18.0 233 283-527 159-428 (432)
152 PF09759 Atx10homo_assoc: Spin 96.9 0.0052 1.1E-07 47.6 7.4 65 331-396 2-68 (102)
153 KOG2274 Predicted importin 9 [ 96.9 0.48 1E-05 50.4 23.6 245 158-413 464-719 (1005)
154 KOG4151 Myosin assembly protei 96.8 0.088 1.9E-06 55.0 17.8 242 269-528 500-742 (748)
155 KOG0414 Chromosome condensatio 96.7 1.3 2.7E-05 48.9 27.9 132 360-519 921-1056(1251)
156 PF05004 IFRD: Interferon-rela 96.6 0.53 1.1E-05 45.3 20.5 195 317-529 45-259 (309)
157 KOG2062 26S proteasome regulat 96.6 0.44 9.6E-06 49.5 20.3 164 275-473 521-688 (929)
158 PF05918 API5: Apoptosis inhib 96.5 0.23 5E-06 51.0 18.1 134 232-386 25-161 (556)
159 KOG2025 Chromosome condensatio 96.5 0.51 1.1E-05 48.9 20.1 104 273-384 85-190 (892)
160 PF02985 HEAT: HEAT repeat; I 96.5 0.0057 1.2E-07 36.1 3.9 30 231-260 1-30 (31)
161 KOG4151 Myosin assembly protei 96.4 0.05 1.1E-06 56.8 12.9 232 100-339 502-736 (748)
162 KOG4653 Uncharacterized conser 96.4 0.29 6.4E-06 51.7 18.1 231 231-480 728-963 (982)
163 KOG1248 Uncharacterized conser 96.3 2.3 5.1E-05 46.9 30.0 229 238-481 662-898 (1176)
164 KOG2734 Uncharacterized conser 96.3 1.3 2.7E-05 43.5 25.2 221 206-435 102-349 (536)
165 PF02985 HEAT: HEAT repeat; I 96.2 0.0069 1.5E-07 35.8 3.4 29 274-302 1-29 (31)
166 PF12719 Cnd3: Nuclear condens 96.2 0.5 1.1E-05 45.4 18.2 189 273-481 26-233 (298)
167 PF11698 V-ATPase_H_C: V-ATPas 96.2 0.019 4E-07 45.8 6.4 71 403-480 44-114 (119)
168 PF11698 V-ATPase_H_C: V-ATPas 96.2 0.015 3.3E-07 46.2 5.9 73 272-344 42-115 (119)
169 KOG1991 Nuclear transport rece 96.1 2.7 6E-05 45.5 33.4 447 36-508 391-872 (1010)
170 PF12719 Cnd3: Nuclear condens 95.9 0.55 1.2E-05 45.1 16.7 110 230-345 26-144 (298)
171 PF08569 Mo25: Mo25-like; Int 95.9 1.8 4E-05 41.9 21.1 202 181-388 71-284 (335)
172 KOG4653 Uncharacterized conser 95.9 0.82 1.8E-05 48.5 18.4 213 202-427 741-959 (982)
173 KOG0414 Chromosome condensatio 95.9 0.087 1.9E-06 57.4 11.8 141 231-388 920-1065(1251)
174 PRK14707 hypothetical protein; 95.9 5.3 0.00012 47.1 38.0 437 15-478 203-652 (2710)
175 KOG2274 Predicted importin 9 [ 95.8 2 4.3E-05 46.0 20.9 274 111-393 500-786 (1005)
176 KOG1967 DNA repair/transcripti 95.8 0.26 5.7E-06 52.4 14.5 190 146-342 816-1022(1030)
177 KOG1243 Protein kinase [Genera 95.8 0.084 1.8E-06 54.5 10.7 191 312-530 327-518 (690)
178 KOG1020 Sister chromatid cohes 95.8 4.9 0.00011 45.8 35.1 110 57-178 815-926 (1692)
179 PF11701 UNC45-central: Myosin 95.8 0.17 3.7E-06 43.3 11.2 139 326-479 16-157 (157)
180 PF11701 UNC45-central: Myosin 95.7 0.1 2.3E-06 44.6 9.7 148 188-341 5-156 (157)
181 KOG2956 CLIP-associating prote 95.6 1.8 3.9E-05 42.9 18.4 175 286-480 300-476 (516)
182 KOG1967 DNA repair/transcripti 95.6 0.59 1.3E-05 49.9 16.0 186 273-476 815-1019(1030)
183 PF08569 Mo25: Mo25-like; Int 95.3 3.1 6.7E-05 40.4 22.3 204 225-432 71-283 (335)
184 COG5116 RPN2 26S proteasome re 95.0 0.45 9.7E-06 48.0 12.6 98 359-481 552-650 (926)
185 KOG1243 Protein kinase [Genera 95.0 0.34 7.4E-06 50.2 12.1 188 184-387 328-515 (690)
186 PF06025 DUF913: Domain of Unk 95.0 2.6 5.7E-05 41.8 18.0 101 269-371 101-209 (379)
187 KOG3036 Protein involved in ce 94.9 2.8 6.1E-05 37.9 17.8 141 291-433 97-248 (293)
188 COG5116 RPN2 26S proteasome re 94.8 0.46 9.9E-06 47.9 12.1 127 280-433 523-651 (926)
189 KOG3036 Protein involved in ce 94.8 3 6.6E-05 37.7 17.0 138 249-388 98-248 (293)
190 KOG0413 Uncharacterized conser 94.7 7.9 0.00017 42.1 23.4 129 372-528 945-1074(1529)
191 KOG2025 Chromosome condensatio 94.6 3.4 7.4E-05 43.2 17.7 105 142-254 82-188 (892)
192 PF08167 RIX1: rRNA processing 94.6 0.69 1.5E-05 40.0 11.5 116 17-135 25-147 (165)
193 PF07814 WAPL: Wings apart-lik 94.5 4.1 9E-05 40.3 18.3 238 188-441 23-308 (361)
194 PRK14707 hypothetical protein; 94.1 16 0.00035 43.4 38.3 312 16-341 162-484 (2710)
195 PF04078 Rcd1: Cell differenti 93.9 5.1 0.00011 36.9 20.1 186 202-389 9-220 (262)
196 PF07814 WAPL: Wings apart-lik 93.9 5.1 0.00011 39.6 17.5 273 18-305 22-358 (361)
197 KOG2999 Regulator of Rac1, req 93.7 0.65 1.4E-05 46.7 10.6 157 231-391 84-246 (713)
198 PF04078 Rcd1: Cell differenti 93.7 2.5 5.5E-05 38.8 13.5 147 292-441 69-226 (262)
199 PF01347 Vitellogenin_N: Lipop 93.7 2.4 5.2E-05 45.6 16.1 194 188-422 397-612 (618)
200 PF08045 CDC14: Cell division 93.7 0.66 1.4E-05 42.7 10.0 97 246-343 107-206 (257)
201 KOG2956 CLIP-associating prote 93.5 4.9 0.00011 40.0 15.8 173 72-260 302-478 (516)
202 KOG2999 Regulator of Rac1, req 93.4 8.5 0.00018 39.1 17.4 160 190-354 87-252 (713)
203 PF08045 CDC14: Cell division 93.3 0.96 2.1E-05 41.7 10.3 98 119-217 108-207 (257)
204 COG5656 SXM1 Importin, protein 93.2 13 0.00028 39.4 20.9 280 186-481 408-711 (970)
205 PF13764 E3_UbLigase_R4: E3 ub 93.2 15 0.00033 40.1 21.2 181 15-198 115-331 (802)
206 PF13251 DUF4042: Domain of un 93.1 1.9 4E-05 37.8 11.4 143 331-481 2-174 (182)
207 KOG1820 Microtubule-associated 93.1 2.8 6E-05 45.6 14.9 176 201-386 266-442 (815)
208 PF10363 DUF2435: Protein of u 93.0 0.53 1.1E-05 36.0 6.9 72 317-391 5-76 (92)
209 PF04063 DUF383: Domain of unk 92.9 2 4.2E-05 38.0 11.4 129 369-508 6-157 (192)
210 COG5098 Chromosome condensatio 92.8 5.2 0.00011 41.8 15.3 132 242-391 908-1041(1128)
211 KOG2933 Uncharacterized conser 92.7 0.69 1.5E-05 43.2 8.4 140 231-385 89-232 (334)
212 PF14668 RICTOR_V: Rapamycin-i 92.6 0.94 2E-05 32.8 7.3 66 420-498 4-70 (73)
213 KOG1949 Uncharacterized conser 92.2 5.7 0.00012 41.6 14.7 196 312-525 126-329 (1005)
214 KOG1566 Conserved protein Mo25 92.1 11 0.00023 35.6 16.7 204 180-388 73-287 (342)
215 PF14500 MMS19_N: Dos2-interac 91.9 11 0.00024 35.3 16.6 213 107-344 4-237 (262)
216 PF10363 DUF2435: Protein of u 91.9 1.7 3.8E-05 33.2 8.6 71 360-435 5-75 (92)
217 KOG1832 HIV-1 Vpr-binding prot 91.9 8.7 0.00019 41.4 15.9 345 33-398 369-782 (1516)
218 COG5218 YCG1 Chromosome conden 91.8 5.5 0.00012 40.8 13.9 101 272-380 90-192 (885)
219 smart00638 LPD_N Lipoprotein N 91.7 8.9 0.00019 40.8 17.0 159 231-421 394-567 (574)
220 PF01347 Vitellogenin_N: Lipop 91.7 1.7 3.6E-05 46.8 11.7 170 231-429 396-586 (618)
221 PF13251 DUF4042: Domain of un 91.7 4.5 9.8E-05 35.4 12.0 142 246-389 2-176 (182)
222 PF08506 Cse1: Cse1; InterPro 91.5 15 0.00034 36.3 17.2 149 142-297 207-370 (370)
223 KOG1820 Microtubule-associated 91.5 9.8 0.00021 41.5 16.6 188 231-432 254-443 (815)
224 KOG2032 Uncharacterized conser 91.4 17 0.00037 36.5 20.9 138 201-344 271-415 (533)
225 PF12830 Nipped-B_C: Sister ch 91.3 9.9 0.00022 33.6 15.1 119 316-443 9-133 (187)
226 KOG1822 Uncharacterized conser 90.8 39 0.00085 40.0 20.7 107 278-388 881-989 (2067)
227 KOG2933 Uncharacterized conser 90.7 4.3 9.4E-05 38.1 11.3 133 360-518 90-225 (334)
228 KOG2137 Protein kinase [Signal 90.7 25 0.00055 37.2 18.9 234 116-371 287-521 (700)
229 PF08167 RIX1: rRNA processing 90.4 4.3 9.4E-05 35.0 10.8 115 359-481 26-143 (165)
230 smart00638 LPD_N Lipoprotein N 90.4 6.9 0.00015 41.6 14.6 163 316-521 394-572 (574)
231 PF04063 DUF383: Domain of unk 90.3 1.6 3.5E-05 38.6 8.0 112 241-356 6-142 (192)
232 PF06371 Drf_GBD: Diaphanous G 90.2 3.8 8.3E-05 36.1 10.7 80 179-258 100-186 (187)
233 PF12530 DUF3730: Protein of u 90.2 15 0.00033 33.8 20.1 202 233-466 3-217 (234)
234 PF12530 DUF3730: Protein of u 90.1 15 0.00033 33.7 17.1 195 110-328 9-216 (234)
235 PF13764 E3_UbLigase_R4: E3 ub 90.0 34 0.00073 37.5 22.2 239 269-527 113-406 (802)
236 PF14631 FancD2: Fanconi anaem 89.9 48 0.001 39.2 23.9 340 105-481 195-587 (1426)
237 KOG1832 HIV-1 Vpr-binding prot 89.8 34 0.00073 37.2 20.1 152 308-481 594-773 (1516)
238 cd03567 VHS_GGA VHS domain fam 89.8 6.8 0.00015 32.6 10.9 95 368-480 15-115 (139)
239 KOG2137 Protein kinase [Signal 89.5 1.7 3.7E-05 45.5 8.5 137 10-157 382-520 (700)
240 PF14668 RICTOR_V: Rapamycin-i 89.3 1.5 3.2E-05 31.8 5.8 58 469-531 4-62 (73)
241 PF06371 Drf_GBD: Diaphanous G 89.1 1.6 3.4E-05 38.6 7.3 82 219-301 96-186 (187)
242 PF01603 B56: Protein phosphat 88.8 28 0.00061 35.1 23.1 235 269-531 129-374 (409)
243 COG5098 Chromosome condensatio 88.8 2.8 6.1E-05 43.6 9.3 129 370-526 908-1036(1128)
244 PF11864 DUF3384: Domain of un 87.8 36 0.00078 35.1 19.1 95 373-480 230-329 (464)
245 PF11707 Npa1: Ribosome 60S bi 87.3 31 0.00066 33.7 20.2 160 360-525 58-235 (330)
246 PF08324 PUL: PUL domain; Int 87.0 16 0.00034 34.5 13.0 159 146-306 64-235 (268)
247 PF12074 DUF3554: Domain of un 85.4 39 0.00084 33.1 15.8 198 188-392 24-240 (339)
248 KOG0413 Uncharacterized conser 85.3 65 0.0014 35.6 18.5 124 164-303 951-1074(1529)
249 KOG3665 ZYG-1-like serine/thre 85.2 61 0.0013 35.2 22.6 195 253-477 494-693 (699)
250 cd03568 VHS_STAM VHS domain fa 84.8 9.8 0.00021 31.9 9.2 71 403-480 38-109 (144)
251 cd03568 VHS_STAM VHS domain fa 84.3 7.7 0.00017 32.6 8.4 95 284-387 15-110 (144)
252 PF08506 Cse1: Cse1; InterPro 84.1 47 0.001 33.0 20.6 158 297-476 194-370 (370)
253 KOG3665 ZYG-1-like serine/thre 83.8 71 0.0015 34.8 19.1 181 296-508 494-677 (699)
254 COG5209 RCD1 Uncharacterized p 83.5 21 0.00046 32.0 10.8 140 291-432 118-268 (315)
255 cd03561 VHS VHS domain family; 83.1 14 0.0003 30.6 9.4 71 403-480 38-111 (133)
256 PF12054 DUF3535: Domain of un 82.1 63 0.0014 33.0 16.5 216 72-302 102-342 (441)
257 KOG1949 Uncharacterized conser 82.0 75 0.0016 33.8 21.9 150 318-481 177-331 (1005)
258 cd03567 VHS_GGA VHS domain fam 81.9 10 0.00022 31.5 8.1 94 284-386 16-115 (139)
259 PF12031 DUF3518: Domain of un 81.4 5.5 0.00012 36.1 6.6 87 373-466 139-230 (257)
260 cd03569 VHS_Hrs_Vps27p VHS dom 81.3 11 0.00024 31.5 8.2 72 315-386 41-113 (142)
261 KOG1992 Nuclear export recepto 81.0 88 0.0019 33.9 28.6 164 352-527 355-527 (960)
262 COG5218 YCG1 Chromosome conden 80.8 26 0.00057 36.1 11.7 105 228-339 89-194 (885)
263 KOG1788 Uncharacterized conser 80.3 1.1E+02 0.0023 34.4 20.7 287 17-325 466-784 (2799)
264 PF10521 DUF2454: Protein of u 80.2 27 0.00059 33.2 11.5 114 231-344 120-253 (282)
265 cd03561 VHS VHS domain family; 79.9 15 0.00033 30.3 8.5 95 284-387 15-112 (133)
266 PF11865 DUF3385: Domain of un 78.7 16 0.00034 31.4 8.5 145 187-343 11-156 (160)
267 PF11865 DUF3385: Domain of un 78.6 18 0.00039 31.0 8.9 144 230-385 10-155 (160)
268 cd03569 VHS_Hrs_Vps27p VHS dom 78.6 24 0.00053 29.5 9.4 71 403-480 42-113 (142)
269 PF06025 DUF913: Domain of Unk 76.5 43 0.00093 33.4 12.0 123 188-312 108-242 (379)
270 PF04869 Uso1_p115_head: Uso1 76.2 77 0.0017 30.6 14.3 157 274-432 35-231 (312)
271 KOG4464 Signaling protein RIC- 74.4 95 0.0021 30.8 16.8 155 232-389 47-233 (532)
272 smart00288 VHS Domain present 73.9 22 0.00049 29.3 7.9 72 315-386 37-110 (133)
273 PF06685 DUF1186: Protein of u 73.8 14 0.0003 34.1 7.2 71 14-95 70-151 (249)
274 PF12830 Nipped-B_C: Sister ch 73.3 15 0.00033 32.4 7.3 69 231-306 9-78 (187)
275 smart00288 VHS Domain present 73.0 36 0.00078 28.1 9.0 71 403-480 38-110 (133)
276 PF13001 Ecm29: Proteasome sta 71.8 28 0.00061 36.2 9.9 100 242-344 386-488 (501)
277 KOG2611 Neurochondrin/leucine- 71.6 1.2E+02 0.0026 30.8 15.0 131 150-283 16-162 (698)
278 KOG1525 Sister chromatid cohes 71.0 2.1E+02 0.0046 33.4 25.1 146 314-481 258-405 (1266)
279 PF11707 Npa1: Ribosome 60S bi 70.3 1.1E+02 0.0024 29.8 22.1 155 275-432 58-237 (330)
280 PF06685 DUF1186: Protein of u 69.4 96 0.0021 28.7 13.9 27 417-443 127-153 (249)
281 cd08050 TAF6 TATA Binding Prot 69.2 1E+02 0.0022 30.3 12.5 102 418-533 232-343 (343)
282 PF14500 MMS19_N: Dos2-interac 68.6 1E+02 0.0023 28.8 16.5 219 234-481 3-237 (262)
283 cd08050 TAF6 TATA Binding Prot 68.4 46 0.00099 32.7 10.0 110 230-342 210-338 (343)
284 cd03565 VHS_Tom1 VHS domain fa 67.8 58 0.0013 27.2 9.1 96 368-480 15-114 (141)
285 COG5209 RCD1 Uncharacterized p 66.9 23 0.00049 31.8 6.6 100 421-531 118-222 (315)
286 KOG2038 CAATT-binding transcri 66.7 1.9E+02 0.0042 31.2 15.5 103 359-481 305-409 (988)
287 PF12031 DUF3518: Domain of un 66.5 11 0.00024 34.2 4.8 83 288-371 139-229 (257)
288 PLN03076 ARF guanine nucleotid 66.5 3.1E+02 0.0068 33.5 18.6 99 283-387 1147-1253(1780)
289 PF08713 DNA_alkylation: DNA a 66.4 94 0.002 27.8 11.2 143 232-400 53-197 (213)
290 KOG0392 SNF2 family DNA-depend 66.1 2.4E+02 0.0052 32.6 15.2 235 230-483 77-327 (1549)
291 PF14225 MOR2-PAG1_C: Cell mor 66.0 1.2E+02 0.0026 28.5 17.1 158 191-371 69-241 (262)
292 KOG1788 Uncharacterized conser 65.0 2.3E+02 0.0051 32.0 14.6 235 165-410 663-958 (2799)
293 KOG1848 Uncharacterized conser 64.9 2.8E+02 0.006 32.4 17.7 54 243-297 942-997 (1610)
294 PF10521 DUF2454: Protein of u 64.3 1.3E+02 0.0029 28.5 13.3 71 273-343 119-202 (282)
295 PF08324 PUL: PUL domain; Int 63.9 1E+02 0.0022 28.9 11.3 146 32-180 78-238 (268)
296 PF00790 VHS: VHS domain; Int 62.6 20 0.00044 29.8 5.5 72 315-386 42-117 (140)
297 PF11791 Aconitase_B_N: Aconit 62.2 20 0.00043 30.0 5.1 100 276-388 25-124 (154)
298 PF08389 Xpo1: Exportin 1-like 62.0 88 0.0019 25.8 9.6 127 245-382 3-148 (148)
299 PF00790 VHS: VHS domain; Int 61.8 53 0.0011 27.3 7.9 73 452-527 42-118 (140)
300 cd03572 ENTH_epsin_related ENT 61.4 70 0.0015 25.9 8.0 72 453-527 39-119 (122)
301 PF14663 RasGEF_N_2: Rapamycin 61.2 24 0.00052 28.3 5.5 40 17-56 8-47 (115)
302 PF04869 Uso1_p115_head: Uso1 60.9 1.6E+02 0.0035 28.4 14.9 158 316-480 35-230 (312)
303 KOG0392 SNF2 family DNA-depend 60.0 1.6E+02 0.0035 33.8 12.7 151 273-432 77-237 (1549)
304 PF10274 ParcG: Parkin co-regu 59.8 1.2E+02 0.0026 26.5 9.8 73 230-303 38-110 (183)
305 PF12765 Cohesin_HEAT: HEAT re 58.8 12 0.00027 23.6 2.7 26 229-254 17-42 (42)
306 PF14225 MOR2-PAG1_C: Cell mor 58.0 1.6E+02 0.0036 27.5 11.8 133 19-171 113-252 (262)
307 KOG1822 Uncharacterized conser 57.7 4.3E+02 0.0092 32.2 17.7 225 107-343 881-1126(2067)
308 cd03572 ENTH_epsin_related ENT 57.1 1E+02 0.0023 24.9 10.2 70 403-479 39-117 (122)
309 KOG4464 Signaling protein RIC- 56.4 2.2E+02 0.0047 28.4 18.7 103 243-346 110-233 (532)
310 KOG2149 Uncharacterized conser 56.2 1E+02 0.0022 30.5 9.5 114 275-390 60-173 (393)
311 PF04388 Hamartin: Hamartin pr 54.0 2.5E+02 0.0053 30.6 13.1 134 103-258 5-139 (668)
312 PF01603 B56: Protein phosphat 53.7 2.5E+02 0.0055 28.3 16.1 234 225-481 128-370 (409)
313 PF04821 TIMELESS: Timeless pr 52.5 2E+02 0.0044 27.0 11.0 33 269-301 36-71 (266)
314 KOG1525 Sister chromatid cohes 52.1 4.6E+02 0.0099 30.8 15.8 147 358-527 259-405 (1266)
315 PF03130 HEAT_PBS: PBS lyase H 52.0 7 0.00015 21.9 0.7 14 468-481 1-14 (27)
316 PF13001 Ecm29: Proteasome sta 51.4 3.1E+02 0.0066 28.6 29.0 174 240-432 247-443 (501)
317 KOG0889 Histone acetyltransfer 51.0 4.5E+02 0.0097 34.2 15.4 157 231-389 985-1157(3550)
318 KOG1566 Conserved protein Mo25 50.9 2.3E+02 0.0051 27.1 17.7 206 310-526 74-285 (342)
319 cd03565 VHS_Tom1 VHS domain fa 50.9 1.3E+02 0.0029 25.0 8.5 96 283-387 15-115 (141)
320 PF04388 Hamartin: Hamartin pr 47.9 4E+02 0.0087 29.0 14.1 81 371-461 81-161 (668)
321 KOG0891 DNA-dependent protein 47.2 2.8E+02 0.006 34.8 13.1 226 109-345 488-720 (2341)
322 cd00197 VHS_ENTH_ANTH VHS, ENT 46.8 1.4E+02 0.0031 23.6 8.3 69 316-384 38-112 (115)
323 PF08216 CTNNBL: Catenin-beta- 45.2 28 0.00061 27.3 3.3 42 206-248 64-105 (108)
324 KOG2011 Sister chromatid cohes 44.5 1.3E+02 0.0028 34.0 9.2 96 283-381 297-393 (1048)
325 smart00567 EZ_HEAT E-Z type HE 43.6 29 0.00063 19.7 2.5 28 245-284 2-29 (30)
326 KOG0301 Phospholipase A2-activ 43.4 4.4E+02 0.0095 28.2 15.7 163 154-325 554-726 (745)
327 PF08216 CTNNBL: Catenin-beta- 43.0 15 0.00033 28.8 1.5 41 250-292 66-106 (108)
328 PF07539 DRIM: Down-regulated 42.7 1.5E+02 0.0033 24.7 7.5 27 57-83 16-43 (141)
329 KOG0891 DNA-dependent protein 42.5 8.2E+02 0.018 31.1 15.9 200 270-480 562-762 (2341)
330 cd00197 VHS_ENTH_ANTH VHS, ENT 42.5 1.7E+02 0.0037 23.1 9.1 71 453-526 38-114 (115)
331 COG5656 SXM1 Importin, protein 42.4 4.9E+02 0.011 28.4 31.4 379 17-412 408-826 (970)
332 PF06012 DUF908: Domain of Unk 41.8 1.4E+02 0.003 29.2 8.3 56 34-89 239-300 (329)
333 KOG1087 Cytosolic sorting prot 40.2 1.8E+02 0.004 29.8 9.0 95 366-478 13-109 (470)
334 KOG1992 Nuclear export recepto 40.0 5.5E+02 0.012 28.3 28.1 127 148-289 9-142 (960)
335 KOG2549 Transcription initiati 40.0 3.4E+02 0.0074 28.2 10.6 144 104-259 209-370 (576)
336 PF14726 RTTN_N: Rotatin, an a 39.6 1.8E+02 0.0039 22.6 7.8 67 228-296 28-94 (98)
337 PF12231 Rif1_N: Rap1-interact 37.4 4.3E+02 0.0092 26.3 22.6 133 201-343 59-203 (372)
338 PF11791 Aconitase_B_N: Aconit 36.9 1.2E+02 0.0026 25.5 5.9 102 16-131 21-123 (154)
339 KOG1087 Cytosolic sorting prot 36.9 2.1E+02 0.0045 29.4 8.8 95 281-384 13-109 (470)
340 PF14663 RasGEF_N_2: Rapamycin 36.7 1.3E+02 0.0028 24.1 6.0 38 274-312 9-46 (115)
341 cd07064 AlkD_like_1 A new stru 36.2 3.2E+02 0.0069 24.5 13.4 140 235-400 51-192 (208)
342 PF12231 Rif1_N: Rap1-interact 35.5 4.6E+02 0.0099 26.1 20.5 132 160-301 62-203 (372)
343 PRK04330 hypothetical protein; 34.8 2E+02 0.0043 21.7 6.3 64 455-526 16-81 (88)
344 KOG2549 Transcription initiati 34.7 5.5E+02 0.012 26.8 12.6 109 231-342 240-368 (576)
345 KOG1993 Nuclear transport rece 34.5 6.6E+02 0.014 27.7 23.0 321 106-442 530-874 (978)
346 PF12726 SEN1_N: SEN1 N termin 34.4 4.6E+02 0.01 28.9 11.8 157 318-479 444-602 (727)
347 PF03685 UPF0147: Uncharacteri 34.3 1.8E+02 0.0039 21.8 5.8 64 455-526 13-78 (85)
348 PF12397 U3snoRNP10: U3 small 34.2 2.4E+02 0.0053 22.5 9.2 67 231-304 7-76 (121)
349 KOG2199 Signal transducing ada 34.1 2.5E+02 0.0055 27.7 8.3 70 403-480 46-117 (462)
350 PF07923 N1221: N1221-like pro 34.0 89 0.0019 29.9 5.6 58 451-508 59-126 (293)
351 PF09324 DUF1981: Domain of un 33.2 1.7E+02 0.0037 21.9 5.9 65 312-382 14-83 (86)
352 KOG2676 Uncharacterized conser 32.8 65 0.0014 31.2 4.2 62 37-98 376-441 (478)
353 PF07571 DUF1546: Protein of u 31.7 1.5E+02 0.0033 22.5 5.5 58 241-300 17-76 (92)
354 PF08389 Xpo1: Exportin 1-like 31.3 2.9E+02 0.0063 22.6 11.1 63 403-476 83-148 (148)
355 PF14726 RTTN_N: Rotatin, an a 31.0 2.5E+02 0.0055 21.7 8.3 67 451-522 29-95 (98)
356 PF01365 RYDR_ITPR: RIH domain 30.8 2E+02 0.0043 25.7 7.1 51 178-228 35-101 (207)
357 KOG1988 Uncharacterized conser 29.5 8.2E+02 0.018 27.2 12.3 215 232-481 65-281 (970)
358 KOG2011 Sister chromatid cohes 29.3 3.3E+02 0.0071 31.0 9.3 132 201-341 300-432 (1048)
359 KOG4231 Intracellular membrane 28.5 1.4E+02 0.003 30.5 5.8 69 232-301 330-398 (763)
360 PF07539 DRIM: Down-regulated 28.4 3.5E+02 0.0076 22.6 8.9 29 357-385 16-44 (141)
361 PF07571 DUF1546: Protein of u 28.3 1.7E+02 0.0037 22.2 5.2 58 284-342 17-76 (92)
362 KOG2611 Neurochondrin/leucine- 28.0 6.8E+02 0.015 25.7 16.3 134 319-465 15-165 (698)
363 cd06561 AlkD_like A new struct 27.9 2.4E+02 0.0052 24.7 7.1 73 318-398 108-181 (197)
364 PLN03076 ARF guanine nucleotid 27.4 1.3E+03 0.027 28.7 23.4 179 158-344 1151-1376(1780)
365 PF01365 RYDR_ITPR: RIH domain 27.4 1.9E+02 0.0042 25.8 6.3 47 49-95 34-99 (207)
366 KOG2005 26S proteasome regulat 27.1 8.2E+02 0.018 26.4 12.7 35 12-46 43-77 (878)
367 KOG2676 Uncharacterized conser 26.4 67 0.0014 31.1 3.1 64 164-227 376-439 (478)
368 PF12463 DUF3689: Protein of u 26.3 5.9E+02 0.013 24.5 13.0 79 314-392 94-178 (303)
369 KOG2199 Signal transducing ada 25.8 2.4E+02 0.0052 27.9 6.7 74 230-304 45-120 (462)
370 PF03378 CAS_CSE1: CAS/CSE pro 25.2 7.4E+02 0.016 25.3 15.5 61 200-260 84-147 (435)
371 PF07923 N1221: N1221-like pro 25.1 1.2E+02 0.0027 28.9 4.9 57 270-326 57-127 (293)
372 KOG4524 Uncharacterized conser 24.8 2.6E+02 0.0056 31.2 7.3 93 230-325 803-899 (1014)
373 KOG2005 26S proteasome regulat 24.7 9E+02 0.02 26.1 12.7 63 364-436 646-708 (878)
374 KOG0301 Phospholipase A2-activ 24.7 9E+02 0.019 26.0 16.6 152 281-438 552-710 (745)
375 KOG1848 Uncharacterized conser 24.6 1.2E+03 0.027 27.6 16.9 153 143-302 794-958 (1610)
376 PF10274 ParcG: Parkin co-regu 24.5 4.9E+02 0.011 22.9 11.1 76 360-439 40-116 (183)
377 PF09324 DUF1981: Domain of un 24.4 3.1E+02 0.0066 20.5 6.7 65 270-339 14-83 (86)
378 PF04499 SAPS: SIT4 phosphatas 23.1 8.5E+02 0.018 25.2 12.4 58 450-507 60-127 (475)
379 cd03562 CID CID (CTD-Interacti 21.7 4E+02 0.0087 20.9 8.0 87 370-476 17-103 (114)
380 PF01465 GRIP: GRIP domain; I 21.5 1.1E+02 0.0025 19.7 2.6 29 502-530 11-39 (46)
381 PF11935 DUF3453: Domain of un 20.5 6.7E+02 0.015 23.0 11.7 119 324-442 2-155 (239)
382 PF14666 RICTOR_M: Rapamycin-i 20.4 6.6E+02 0.014 22.9 8.5 28 104-131 197-225 (226)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=8e-47 Score=416.32 Aligned_cols=501 Identities=18% Similarity=0.171 Sum_probs=416.4
Q ss_pred cccccchHHHHhhhcCCCcchhHHHHHHHHHhhcCc--h-hH-HHHHhcCchHHHHHhhcCC---h-HHHHHHHHHHHHH
Q 009514 13 FLQEENMEFLLSLLNNESENVSGLGASIISHSCKTS--L-EQ-KLLFDAGVLKRLTSLLGGS---L-IQRDASLESIATI 84 (533)
Q Consensus 13 l~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~--~-~~-~~i~~~g~i~~L~~lL~~~---~-~v~~~al~aL~~l 84 (533)
++..|++|+|+.+|++++...++.|+.+|.+++... + ++ ..++..|++|+|+.++++. + .+++.++.+|.++
T Consensus 95 Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nL 174 (2102)
T PLN03200 95 VLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNL 174 (2102)
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence 446899999999999999999999999999999764 3 34 4467899999999999862 2 3677788999999
Q ss_pred hcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhh
Q 009514 85 FKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGD 162 (533)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~ 162 (533)
+...++..+.+.+ .|+++.++.+++++++..|..|+.+|.+++...+. ....+++.|++|.|++++++ +..+++
T Consensus 175 s~~~en~~~~IIe---aGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee-~~~aVIeaGaVP~LV~LL~sg~~~~VRE 250 (2102)
T PLN03200 175 CGSTDGFWSATLE---AGGVDILVKLLSSGNSDAQANAASLLARLMMAFES-SISKVLDAGAVKQLLKLLGQGNEVSVRA 250 (2102)
T ss_pred hcCccchHHHHHH---cCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHCCCHHHHHHHHccCCChHHHH
Confidence 9888776555543 68999999999999999999999999888766433 46678899999999999974 347899
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCC-------CchhHHHHHHHHHHhhccchh-----------hhH
Q 009514 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL-------HPRRFEGILLALADMCSKLEC-----------CRS 224 (533)
Q Consensus 163 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~-------~~~~~~~a~~aL~~l~~~~~~-----------~~~ 224 (533)
+|+++|.+++.+++++++.+++.|++|.|++++..+.. ....+++|+|+|+|+|++.+. .|.
T Consensus 251 ~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd 330 (2102)
T PLN03200 251 EAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRS 330 (2102)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccch
Confidence 99999999999999999999999999999998875431 234689999999998874211 000
Q ss_pred --------------------------------------------------------------------hhhhhchHHHHH
Q 009514 225 --------------------------------------------------------------------RCLSLQVLKLVV 236 (533)
Q Consensus 225 --------------------------------------------------------------------~~~~~~~l~~l~ 236 (533)
.+.+.++++.|+
T Consensus 331 ~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV 410 (2102)
T PLN03200 331 PAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLV 410 (2102)
T ss_pred HHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhh
Confidence 011123445556
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCc
Q 009514 237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG 316 (533)
Q Consensus 237 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~ 316 (533)
.++...+.++|..++++|++++.+....++. +.+.|++|.|+++|.+++.+++..|+++|+|++.+....+..+++.|+
T Consensus 411 ~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~a-Ii~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGa 489 (2102)
T PLN03200 411 GLITMATADVQEELIRALSSLCCGKGGLWEA-LGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGG 489 (2102)
T ss_pred hhhccCCHHHHHHHHHHHHHHhCCCHHHHHH-HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence 6666667789999999999999775555555 789999999999999999999999999999999888788889999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcch-H--
Q 009514 317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS-V-- 393 (533)
Q Consensus 317 i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~-- 393 (533)
+|.|++++.+++..++++|+|+|.|++.+ ++..+..+.+.|+++.|+++|++.+++.+..++|+|.+++.+.+.. +
T Consensus 490 IP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~ 568 (2102)
T PLN03200 490 IPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQ 568 (2102)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHH
Confidence 99999999999999999999999999874 3445666668899999999999999999999999999997432211 0
Q ss_pred -------------HHHH-------h-------------hcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHH
Q 009514 394 -------------EYIF-------A-------------EDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEA 440 (533)
Q Consensus 394 -------------~~i~-------~-------------~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 440 (533)
..++ . ..| .++.|.++|.+ +++.+++.|+|+|.|++.++++.++.
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~g-gL~~Lv~LL~s-gs~~ikk~Aa~iLsnL~a~~~d~~~a 646 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAND-ALRTLIQLLSS-SKEETQEKAASVLADIFSSRQDLCES 646 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccc-cHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 1000 1 011 57889898888 89999999999999999999888888
Q ss_pred HHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHH
Q 009514 441 VMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKT 520 (533)
Q Consensus 441 ~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~ 520 (533)
++. .|++|.++.+|++++.+++++++|+|.+++. ++..++...+.+.|++++|++++++++.++.+.|..
T Consensus 647 vv~-------agaIpPLV~LLss~~~~v~keAA~AL~nL~~---~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ 716 (2102)
T PLN03200 647 LAT-------DEIINPCIKLLTNNTEAVATQSARALAALSR---SIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVC 716 (2102)
T ss_pred HHH-------cCCHHHHHHHHhcCChHHHHHHHHHHHHHHh---CCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHH
Confidence 886 7999999999999999999999999999994 456667778899999999999999999999999999
Q ss_pred HHHHHhhhccc
Q 009514 521 ALEQFNSFDDS 531 (533)
Q Consensus 521 aL~~~~~~~~~ 531 (533)
||.++.+.+|.
T Consensus 717 ALanLl~~~e~ 727 (2102)
T PLN03200 717 ALANLLSDPEV 727 (2102)
T ss_pred HHHHHHcCchH
Confidence 99999887653
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=3.3e-45 Score=403.63 Aligned_cols=502 Identities=16% Similarity=0.139 Sum_probs=414.0
Q ss_pred ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCC--hhhh
Q 009514 16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNN--PEVV 92 (533)
Q Consensus 16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~--~~~~ 92 (533)
.|++|.|+.+|.++++.+|+.|+.++.+++..++++..+...|++|+|+.+|++ +...|+.|+.+|..++.++ ++..
T Consensus 57 aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~ 136 (2102)
T PLN03200 57 SQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVG 136 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhh
Confidence 789999999999999999999999999999999999999999999999999986 7899999999999999765 4333
Q ss_pred hhhccccCcccHHHHHHHHhcCC---hhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHH
Q 009514 93 SQFVGPDTGRTLSCIIEIVKDRF---ARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAF 168 (533)
Q Consensus 93 ~~~~~~~~~~~i~~l~~ll~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L 168 (533)
..+.. ..|++|.++.++++++ ..++..|+.+|++++...++. ...+++.|++|.|++++++ ++..+.+|+++|
T Consensus 137 ~~I~v--~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~-~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aL 213 (2102)
T PLN03200 137 SKIFS--TEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGF-WSATLEAGGVDILVKLLSSGNSDAQANAASLL 213 (2102)
T ss_pred hhhhh--hcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccch-HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 23221 2689999999999864 335677889999999876542 3456789999999999984 567899999999
Q ss_pred HhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCC-----
Q 009514 169 SSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS----- 243 (533)
Q Consensus 169 ~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~----- 243 (533)
.+++.+.++....+++.|++|.|+++|.++ .++.+|+.|+|+|.++++++++.++.+++.|++|.|++++..++
T Consensus 214 a~Lass~ee~~~aVIeaGaVP~LV~LL~sg-~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~ 292 (2102)
T PLN03200 214 ARLMMAFESSISKVLDAGAVKQLLKLLGQG-NEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQ 292 (2102)
T ss_pred HHHHcCChHHHHHHHHCCCHHHHHHHHccC-CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhc
Confidence 999988777778888999999999998765 34688999999999999998999999999999999999998544
Q ss_pred ----HHHHHHHHHHHHHHhhcccc-----------ccc-------------------------h----------------
Q 009514 244 ----SDVRSAACMCLRSVSRSIKN-----------LSA-------------------------G---------------- 267 (533)
Q Consensus 244 ----~~v~~~a~~~L~~ls~~~~~-----------~~~-------------------------~---------------- 267 (533)
..++..|.|+|.|++..... .+. .
T Consensus 293 ~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr 372 (2102)
T PLN03200 293 GEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLK 372 (2102)
T ss_pred cccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhC
Confidence 35689999999998773111 000 0
Q ss_pred --------------------------hhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHH
Q 009514 268 --------------------------SFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLV 321 (533)
Q Consensus 268 --------------------------~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~ 321 (533)
.+.+.++++.||.++..++.+++..++|+|.+++.+..+.++.+.+.|+++.|+
T Consensus 373 ~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV 452 (2102)
T PLN03200 373 PRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLI 452 (2102)
T ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHH
Confidence 011224445566666666788999999999999988888889999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcC
Q 009514 322 QLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDG 401 (533)
Q Consensus 322 ~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~ 401 (533)
++|.+++...+..++|++++++.+ +++.+..+.+.|+++.|+++|.+++.++++.|+|+|.|++.+. +.+..++...|
T Consensus 453 ~LL~s~s~~iQ~~A~~~L~nLa~~-ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~-~qir~iV~~aG 530 (2102)
T PLN03200 453 SLLGLSSEQQQEYAVALLAILTDE-VDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHS-EDIRACVESAG 530 (2102)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHHCC
Confidence 999999999999999999999874 3467889999999999999999999999999999999999864 34566664433
Q ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHhccCCh-hhHHH---------------HH---HHhhH-----------hhhh
Q 009514 402 IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE-SHKEA---------------VM---DQLLL-----------RAEN 451 (533)
Q Consensus 402 ~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~---------------~~---~~~~~-----------~~~~ 451 (533)
+++.|+.+|.+ .++++++.++|+|.|+..+.+ +.... ++ .+++. ....
T Consensus 531 -AIppLV~LL~s-gd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ 608 (2102)
T PLN03200 531 -AVPALLWLLKN-GGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAN 608 (2102)
T ss_pred -CHHHHHHHHhC-CCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhcc
Confidence 78999999988 789999999999999974221 11100 00 00000 0024
Q ss_pred hhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514 452 KAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 452 ~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~ 529 (533)
|+++.|+++|++++..+++.|+|+|.+++. +..+....+...|++++|+.++.+++.++++.+++||.++.+.+
T Consensus 609 ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a----~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~ 682 (2102)
T PLN03200 609 DALRTLIQLLSSSKEETQEKAASVLADIFS----SRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSI 682 (2102)
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhc----CChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCC
Confidence 688999999999999999999999999996 56677788999999999999999999999999999999998643
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-41 Score=329.44 Aligned_cols=369 Identities=21% Similarity=0.304 Sum_probs=325.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHHH
Q 009514 104 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKL 181 (533)
Q Consensus 104 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~~ 181 (533)
.+..+..+.+.++..+..+...++.+.........+..+..|.+|.+++.++ +++.++.+|+|+|+++++++.+..+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 5667788889999889999999998876665556777888999999999997 35789999999999999999999999
Q ss_pred HHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCH-HHHHHHHHHHHHHhhc
Q 009514 182 AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS-DVRSAACMCLRSVSRS 260 (533)
Q Consensus 182 ~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~-~v~~~a~~~L~~ls~~ 260 (533)
++++|++|.|+.++.+++ ..++++|+|+|++++++.+.+|+.+...|++++|+.++...+. .....+.|+|.||+++
T Consensus 148 vv~agavp~fi~Ll~s~~--~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPS--ADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred cccCCchHHHHHHhcCCc--HHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 999999999999887764 7899999999999999999999999999999999999997765 7788899999999998
Q ss_pred cccccchhh-hhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 009514 261 IKNLSAGSF-MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL 339 (533)
Q Consensus 261 ~~~~~~~~~-~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL 339 (533)
.. .... + ....++|.|..++.+.|+++...|+|||++|+.+..+..+.+++.|+++.|+.++..++..++..|++++
T Consensus 226 k~-P~P~-~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai 303 (514)
T KOG0166|consen 226 KN-PSPP-FDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI 303 (514)
T ss_pred CC-CCCc-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhc
Confidence 42 2212 2 3467899999999999999999999999999999999999999999999999999999988888899999
Q ss_pred HHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhH
Q 009514 340 RNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI 419 (533)
Q Consensus 340 ~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v 419 (533)
+|++.+.+ ...+.+++.+ .++.|..++..++...+
T Consensus 304 GNIvtG~d-------------------------------------------~QTq~vi~~~--~L~~l~~ll~~s~~~~i 338 (514)
T KOG0166|consen 304 GNIVTGSD-------------------------------------------EQTQVVINSG--ALPVLSNLLSSSPKESI 338 (514)
T ss_pred cceeeccH-------------------------------------------HHHHHHHhcC--hHHHHHHHhccCcchhH
Confidence 99877554 2334445555 67888888886678889
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCc
Q 009514 420 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI 499 (533)
Q Consensus 420 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~ 499 (533)
+++|||+++|++.|+.++.+.+++ .|++|.|+.+|++.+.++|++|+|+|+|++ .+|++++..++++.|+
T Consensus 339 kkEAcW~iSNItAG~~~qiqaVid-------a~l~p~Li~~l~~~ef~~rKEAawaIsN~t---s~g~~~qi~yLv~~gi 408 (514)
T KOG0166|consen 339 KKEACWTISNITAGNQEQIQAVID-------ANLIPVLINLLQTAEFDIRKEAAWAISNLT---SSGTPEQIKYLVEQGI 408 (514)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHH-------cccHHHHHHHHhccchHHHHHHHHHHHhhc---ccCCHHHHHHHHHcCC
Confidence 999999999999999999999997 899999999999999999999999999999 4688999999999999
Q ss_pred HHHHHhhhcCCCCcHHHHHHHHHHHHhhhccc
Q 009514 500 VSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS 531 (533)
Q Consensus 500 ~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~~ 531 (533)
+++|..+|.-.+.++-..+..+|++|.+.++.
T Consensus 409 I~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~ 440 (514)
T KOG0166|consen 409 IKPLCDLLTCPDVKIILVALDGLENILKVGEA 440 (514)
T ss_pred chhhhhcccCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999867777777899999999988764
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.5e-40 Score=297.89 Aligned_cols=372 Identities=17% Similarity=0.212 Sum_probs=315.9
Q ss_pred ccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhhhHHHHHHhhhcCCHHHH
Q 009514 102 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQ 179 (533)
Q Consensus 102 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~~ 179 (533)
.-+|.+.+-+-+.+.+-+..|+.-++.+.........+.+++.|++|.+++++++ ...++.+|+|+|+|++++.....
T Consensus 71 ~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 71 SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 4678888888888999999988888887666555567789999999999999963 46678999999999999999888
Q ss_pred HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCH--HHHHHHHHHHHHH
Q 009514 180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS--DVRSAACMCLRSV 257 (533)
Q Consensus 180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~--~v~~~a~~~L~~l 257 (533)
+.++++|++|.++++|.+++ ..++++++|+|++++++++.+|+.+.++|.+.+++.++.+.-. .+...+.|.|.||
T Consensus 151 kvVvd~~AVPlfiqlL~s~~--~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTE--DDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred EEEEeCCchHHHHHHHcCch--HHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHh
Confidence 89999999999999887764 6799999999999999999999999999999999999986644 7788999999999
Q ss_pred hhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHH
Q 009514 258 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR 337 (533)
Q Consensus 258 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~ 337 (533)
++.. +.....-.-...+|.|.+++.+.|+++..-|+|||.+++.++.+..+.+++.|..+.|++++.+++..++..+++
T Consensus 229 cRGk-nP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR 307 (526)
T COG5064 229 CRGK-NPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307 (526)
T ss_pred hCCC-CCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHH
Confidence 9872 222221233567999999999999999999999999999988888888898898888888888877777777777
Q ss_pred HHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCch
Q 009514 338 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA 417 (533)
Q Consensus 338 aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~ 417 (533)
.++|+..+.+ ...+.++++| +++.+..+|++ ++.
T Consensus 308 ~vGNIVTG~D-------------------------------------------~QTqviI~~G--~L~a~~~lLs~-~ke 341 (526)
T COG5064 308 SVGNIVTGSD-------------------------------------------DQTQVIINCG--ALKAFRSLLSS-PKE 341 (526)
T ss_pred hhcCeeecCc-------------------------------------------cceehheecc--cHHHHHHHhcC-hhh
Confidence 7777765443 3445566666 77888777777 888
Q ss_pred hHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHC
Q 009514 418 EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDA 497 (533)
Q Consensus 418 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~ 497 (533)
.++.++||.|+|++.|+.++.+.+++ .+++|.|+.+|.+.+...+++|||+++|.+.. +-+-++.++++++.
T Consensus 342 ~irKEaCWTiSNITAGnteqiqavid-------~nliPpLi~lls~ae~k~kKEACWAisNatsg-g~~~PD~iryLv~q 413 (526)
T COG5064 342 NIRKEACWTISNITAGNTEQIQAVID-------ANLIPPLIHLLSSAEYKIKKEACWAISNATSG-GLNRPDIIRYLVSQ 413 (526)
T ss_pred hhhhhhheeecccccCCHHHHHHHHh-------cccchHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCchHHHHHHHc
Confidence 99999999999999999999999997 89999999999999999999999999999962 23457889999999
Q ss_pred CcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514 498 GIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 498 g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
|++.+|..+|+-.+..+-+-+..++.++.+.++
T Consensus 414 G~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge 446 (526)
T COG5064 414 GFIKPLCDLLDVVDNKIIEVALDAIENILKVGE 446 (526)
T ss_pred cchhHHHHHHhccCccchhhhHHHHHHHHhhhh
Confidence 999999999986666566677899999988765
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-34 Score=278.91 Aligned_cols=322 Identities=18% Similarity=0.269 Sum_probs=277.0
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHhhccc--hhhhHhhhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHhhcccccc
Q 009514 189 DKLYNHLQKGSLHPRRFEGILLALADMCSKL--ECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLS 265 (533)
Q Consensus 189 ~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~--~~~~~~~~~~~~l~~l~~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~ 265 (533)
+..+..+.+. ++..+..+...+..+.+.. +.. ..+...|.+|.++++|. +.++.++..|+|+|.|++.......
T Consensus 69 ~~~~~~~~S~--~~~~q~~a~~~~rkllS~~~~ppi-~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 69 ELMLAALYSD--DPQQQLTATQAFRKLLSKERNPPI-DEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred HHHHHHHhCC--CHHHHHHHHHHHHHHHccCCCCCH-HHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence 4444445444 2445666666666655432 233 44555699999999997 5579999999999999998755555
Q ss_pred chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCH-HHHHHHHHHHHHhhc
Q 009514 266 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS-TIRLNALRALRNLIF 344 (533)
Q Consensus 266 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~al~aL~~l~~ 344 (533)
.. ++++|.+|.+++++.+++.++++.|.|||+|++.+.+.++..+++.|++++|+.++..++. ...+++.|+|.|+|+
T Consensus 146 ~~-vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 146 KV-VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred cc-cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 45 7899999999999999999999999999999999999999999999999999999988765 789999999999999
Q ss_pred cCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHH
Q 009514 345 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGM 424 (533)
Q Consensus 345 ~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~ 424 (533)
+..|.-....+ ...++.|..++.+.|++|...|+|++++++++.++.++.+++.| +++.|+.+|.+ ++..++..|+
T Consensus 225 gk~P~P~~~~v-~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~g--vv~~LV~lL~~-~~~~v~~PaL 300 (514)
T KOG0166|consen 225 GKNPSPPFDVV-APILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAG--VVPRLVDLLGH-SSPKVVTPAL 300 (514)
T ss_pred CCCCCCcHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcc--chHHHHHHHcC-CCcccccHHH
Confidence 87542222222 34589999999999999999999999999999999999999998 89999999998 8889999999
Q ss_pred HHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHH
Q 009514 425 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHV 503 (533)
Q Consensus 425 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L 503 (533)
++++|+++|+..+.+.+++ .+++|.|..++. ++...++++|||+|+|++. |+.++++.+.+.|++|.|
T Consensus 301 RaiGNIvtG~d~QTq~vi~-------~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA----G~~~qiqaVida~l~p~L 369 (514)
T KOG0166|consen 301 RAIGNIVTGSDEQTQVVIN-------SGALPVLSNLLSSSPKESIKKEACWTISNITA----GNQEQIQAVIDANLIPVL 369 (514)
T ss_pred hhccceeeccHHHHHHHHh-------cChHHHHHHHhccCcchhHHHHHHHHHHHhhc----CCHHHHHHHHHcccHHHH
Confidence 9999999999999999997 899999999998 5667799999999999996 899999999999999999
Q ss_pred HhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514 504 KNMVNDPCLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 504 ~~ll~~~~~~v~~~a~~aL~~~~~~~ 529 (533)
+.++++.+.++|..|+||+.|+...+
T Consensus 370 i~~l~~~ef~~rKEAawaIsN~ts~g 395 (514)
T KOG0166|consen 370 INLLQTAEFDIRKEAAWAISNLTSSG 395 (514)
T ss_pred HHHHhccchHHHHHHHHHHHhhcccC
Confidence 99999999999999999999986554
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.5e-34 Score=256.34 Aligned_cols=321 Identities=18% Similarity=0.228 Sum_probs=274.0
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHhhc-cchhhhHhhhhhchHHHHHHhc-CCCCHHHHHHHHHHHHHHhhcccccc
Q 009514 188 VDKLYNHLQKGSLHPRRFEGILLALADMCS-KLECCRSRCLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSVSRSIKNLS 265 (533)
Q Consensus 188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~~l~~l~~~L-~~~~~~v~~~a~~~L~~ls~~~~~~~ 265 (533)
+|.+.+-|.+.+ -+.+..+..-+..+.+ ....-.+.+++.|++|.++++| .......+..|+|+|.|++....+..
T Consensus 73 lp~lt~~l~SdD--ie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT 150 (526)
T COG5064 73 LPQLTQQLFSDD--IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT 150 (526)
T ss_pred hHHHHHHHhhhH--HHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence 567766565542 4445555555554433 2222335678999999999999 56677889999999999988765555
Q ss_pred chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCH--HHHHHHHHHHHHhh
Q 009514 266 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS--TIRLNALRALRNLI 343 (533)
Q Consensus 266 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~--~~~~~al~aL~~l~ 343 (533)
+. +++.|.+|.++++|.+++.+|++.+.|||+|++.+++.++..+++.|++++++.++.++.. .+.+++.|+|+|||
T Consensus 151 kv-Vvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 151 KV-VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred EE-EEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 45 6899999999999999999999999999999999999999999999999999999987654 78899999999999
Q ss_pred ccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHH
Q 009514 344 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG 423 (533)
Q Consensus 344 ~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a 423 (533)
++..|.-....+ ...++.|.+|+.+.|+++...|+|++++++++..+.++.+++.| +...|+.+|.+ ++..|+..+
T Consensus 230 RGknP~P~w~~i-sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g--~~~RLvElLs~-~sa~iqtPa 305 (526)
T COG5064 230 RGKNPPPDWSNI-SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVG--IPGRLVELLSH-ESAKIQTPA 305 (526)
T ss_pred CCCCCCCchHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcC--CcHHHHHHhcC-ccccccCHH
Confidence 986552222222 23589999999999999999999999999999999999999988 78889999988 899999999
Q ss_pred HHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHH
Q 009514 424 MYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHV 503 (533)
Q Consensus 424 ~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L 503 (533)
++.++|+.+|+..+.+.++. .|+++.+-.+|.++...+|++|||+|+|+++ |+.++++.+.++..+|+|
T Consensus 306 lR~vGNIVTG~D~QTqviI~-------~G~L~a~~~lLs~~ke~irKEaCWTiSNITA----Gnteqiqavid~nliPpL 374 (526)
T COG5064 306 LRSVGNIVTGSDDQTQVIIN-------CGALKAFRSLLSSPKENIRKEACWTISNITA----GNTEQIQAVIDANLIPPL 374 (526)
T ss_pred HHhhcCeeecCccceehhee-------cccHHHHHHHhcChhhhhhhhhheeeccccc----CCHHHHHHHHhcccchHH
Confidence 99999999999988888886 9999999999999999999999999999997 888999999999999999
Q ss_pred HhhhcCCCCcHHHHHHHHHHHHh
Q 009514 504 KNMVNDPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 504 ~~ll~~~~~~v~~~a~~aL~~~~ 526 (533)
+.+++..+...+..|.||+.+..
T Consensus 375 i~lls~ae~k~kKEACWAisNat 397 (526)
T COG5064 375 IHLLSSAEYKIKKEACWAISNAT 397 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999777788888999998864
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-32 Score=245.37 Aligned_cols=403 Identities=16% Similarity=0.147 Sum_probs=338.3
Q ss_pred ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514 16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQ 94 (533)
Q Consensus 16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~ 94 (533)
.....+.+-++.+.++.+|.+|...+++++-+.+++..+++.+|+++|+.-..+ .-.+|..+..|+++++..+ +++-.
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d-~nk~k 162 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFD-SNKVK 162 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccc-cchhh
Confidence 356688888999999999999999999999999999999999999987766554 5688999999999997654 33334
Q ss_pred hccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-CCCchhhhHHHHHHhhhc
Q 009514 95 FVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIA 173 (533)
Q Consensus 95 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~a~~~L~~l~~ 173 (533)
+.. .|++.++.++-++.+..+|.++...|.++..... .+...+..|++|.|+.+++ .+..+|+.++.++++++.
T Consensus 163 iA~---sGaL~pltrLakskdirvqrnatgaLlnmThs~E--nRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV 237 (550)
T KOG4224|consen 163 IAR---SGALEPLTRLAKSKDIRVQRNATGALLNMTHSRE--NRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV 237 (550)
T ss_pred hhh---ccchhhhHhhcccchhhHHHHHHHHHHHhhhhhh--hhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh
Confidence 433 6789999999999999999999999999987653 4667889999999999999 467899999999999986
Q ss_pred CCHHHHHHHHHcC--cHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHH
Q 009514 174 EKEDMQKLAFEVN--GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAAC 251 (533)
Q Consensus 174 ~~~~~~~~~~~~~--~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~ 251 (533)
+. ..++...+.+ .+|.|+++..+++ ++++.+|..+|++++++ .++...+++.|.+|.++++|+++.-....+..
T Consensus 238 d~-~~Rk~Laqaep~lv~~Lv~Lmd~~s--~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasV 313 (550)
T KOG4224|consen 238 DR-RARKILAQAEPKLVPALVDLMDDGS--DKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASV 313 (550)
T ss_pred hH-HHHHHHHhcccchHHHHHHHHhCCC--hHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHH
Confidence 54 4466777777 7999999888774 78899999999999975 57778899999999999999999888888999
Q ss_pred HHHHHHhhccccccchhhhhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHH
Q 009514 252 MCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST 330 (533)
Q Consensus 252 ~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 330 (533)
.|++|++-+.-+.. . +.+.|++.+||.+|+. ++++.|..|...|.|++..+..++..++++|+|+.+..++.+....
T Consensus 314 aCIrnisihplNe~-l-I~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvs 391 (550)
T KOG4224|consen 314 ACIRNISIHPLNEV-L-IADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVS 391 (550)
T ss_pred HHHhhcccccCccc-c-eecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChh
Confidence 99999998744322 2 6899999999999985 5677999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcC----chHHH
Q 009514 331 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDG----IILDA 406 (533)
Q Consensus 331 ~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~----~~~~~ 406 (533)
+|.....++..++.+. ..|..+.+.|.++.|+..+.+.+.+++.++..+|.|++.+.. ....+++.-+ .+-..
T Consensus 392 vqseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~-~YarviEawd~P~~gi~g~ 468 (550)
T KOG4224|consen 392 VQSEISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE-HYARVIEAWDHPVQGIQGR 468 (550)
T ss_pred HHHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH-HHHHHHHHhcCcchhHHHH
Confidence 9998888888887743 378999999999999999999999999999999999998754 3334444311 14566
Q ss_pred HHHHhccCCchhHHHHHHHHHHHhccCC
Q 009514 407 VGRQLRIASKAEIEIQGMYVLGNVATGK 434 (533)
Q Consensus 407 L~~~L~~~~~~~v~~~a~~~L~~l~~~~ 434 (533)
|.+++.+ ....++.-+.|.+.++....
T Consensus 469 L~Rfl~S-~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 469 LARFLAS-HELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HHHHHhh-hHHHHHHHHHHHHHHHHHhC
Confidence 7777776 66678888899998887643
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.4e-30 Score=235.92 Aligned_cols=402 Identities=17% Similarity=0.160 Sum_probs=329.8
Q ss_pred cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHH-HHhcCCCCchhhhHHHHHHhhhcCCHHHH
Q 009514 101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL-LELLDDPGRVGDEASFAFSSLIAEKEDMQ 179 (533)
Q Consensus 101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L-~~ll~~~~~~~~~a~~~L~~l~~~~~~~~ 179 (533)
...+.+++-++++.++.+|.+|...+.|++..+.. +-.++.-+++..| .+++.+...+|..+.+++++++.-+ +.+
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~en--k~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d-~nk 160 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMEN--KGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFD-SNK 160 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCC--ceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccc-cch
Confidence 45778889999999999999999999999887643 2334455555544 5777788899999999999999663 445
Q ss_pred HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 009514 180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR 259 (533)
Q Consensus 180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~ 259 (533)
..+...|++.++.+ |.+. .+..++.++..+|.++.. ..+.|+.++..|++|.++.+++++++.+|+.++.++.+++-
T Consensus 161 ~kiA~sGaL~pltr-Laks-kdirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV 237 (550)
T KOG4224|consen 161 VKIARSGALEPLTR-LAKS-KDIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV 237 (550)
T ss_pred hhhhhccchhhhHh-hccc-chhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh
Confidence 66778899999999 5554 467889999999999985 56889999999999999999999999999999999999976
Q ss_pred ccccccchhhhhcC--cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHH
Q 009514 260 SIKNLSAGSFMNET--IVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR 337 (533)
Q Consensus 260 ~~~~~~~~~~~~~~--~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~ 337 (533)
. ...|+. +.+.+ .+|.|++++++++++++..|..+|+|++.+ ..++..+.++|++|.++++++++.-......+.
T Consensus 238 d-~~~Rk~-Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVa 314 (550)
T KOG4224|consen 238 D-RRARKI-LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVA 314 (550)
T ss_pred h-HHHHHH-HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHH
Confidence 5 222333 55555 999999999999999999999999999964 566778999999999999999988888888899
Q ss_pred HHHHhhccCChHhHHHHHHhhcHHHHHhhhCCC-ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCc
Q 009514 338 ALRNLIFLAEDKCKEEIFMELTASLLASLICDP-EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK 416 (533)
Q Consensus 338 aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~ 416 (533)
++.|+..+.. +.--+.+.|.+..|+++|+-. +.++|..|..+|+|++......+..+++.| .++.+..++.+ ..
T Consensus 315 CIrnisihpl--Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esg--Ai~kl~eL~lD-~p 389 (550)
T KOG4224|consen 315 CIRNISIHPL--NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESG--AIPKLIELLLD-GP 389 (550)
T ss_pred HHhhcccccC--cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcC--chHHHHHHHhc-CC
Confidence 9999987543 344577889999999999854 566999999999999987777788888888 78999888877 77
Q ss_pred hhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHH
Q 009514 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHD 496 (533)
Q Consensus 417 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~ 496 (533)
-+++.....++..++..+. .+..+.+ .|++|.|+.++.+.+.+++-+|+.+|.||+. ..++..++.|
T Consensus 390 vsvqseisac~a~Lal~d~-~k~~lld-------~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss-----~v~~YarviE 456 (550)
T KOG4224|consen 390 VSVQSEISACIAQLALNDN-DKEALLD-------SGIIPILIPWTGSESEEVRGNAAAALINLSS-----DVEHYARVIE 456 (550)
T ss_pred hhHHHHHHHHHHHHHhccc-cHHHHhh-------cCCcceeecccCccchhhcccHHHHHHhhhh-----hhHHHHHHHH
Confidence 7889888888888887654 3566665 8999999999999999999999999999995 2333333333
Q ss_pred ------CCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514 497 ------AGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 497 ------~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~ 529 (533)
.|+-..|.+++.+...-++.-+.|.+.++.+-.
T Consensus 457 awd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 457 AWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 567788999988766677777888888876643
No 9
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.95 E-value=6e-25 Score=214.40 Aligned_cols=511 Identities=24% Similarity=0.268 Sum_probs=350.5
Q ss_pred cccCCCCCcccccccchHHHHhhhcC-CCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHH
Q 009514 3 YQSKMAPKYDFLQEENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLES 80 (533)
Q Consensus 3 ~~~~~~~~~~l~~~~~i~~L~~lL~~-~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~a 80 (533)
.++|.++|........|-..+.++-+ +.+.+.+.-+...+++|+..+||..+.+.|.++.+.-++.. +..+|.+|+.+
T Consensus 125 et~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~ 204 (678)
T KOG1293|consen 125 ETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQLILCNAGILEKINILLMYLSSKLRLAALLC 204 (678)
T ss_pred hcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhhheeccccchhhHHHHHHhhhHHHHHHHHHH
Confidence 46778888877766666666666666 88888999999999999999999999999999999999987 78999999999
Q ss_pred HH---HHhcCChhhhhhhccc-cCcccHH--HHHHHHhcCChhhHHHHHHHHHHhhhcCCCcc--hhh-hhHhhhHHHHH
Q 009514 81 IA---TIFKNNPEVVSQFVGP-DTGRTLS--CIIEIVKDRFARTRLLASLCLIVIRNASPCYL--QDV-GIKTKLINNLL 151 (533)
Q Consensus 81 L~---~l~~~~~~~~~~~~~~-~~~~~i~--~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~-~~~~~~i~~L~ 151 (533)
++ ++..++|...-.+... .+.+..+ .+.++.+++++..+..++.|+..++..+.++. ... .....+=..++
T Consensus 205 ~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~ 284 (678)
T KOG1293|consen 205 LSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIV 284 (678)
T ss_pred hhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHH
Confidence 99 7777777653333222 2234444 45678999999999999999999988763210 000 11111111111
Q ss_pred -----HhcCCCCchhhhHH-HHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCC----CCchhHHHHHH---HHHHhhcc
Q 009514 152 -----ELLDDPGRVGDEAS-FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS----LHPRRFEGILL---ALADMCSK 218 (533)
Q Consensus 152 -----~ll~~~~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~----~~~~~~~~a~~---aL~~l~~~ 218 (533)
.+..++......+. ......+.-.+..+....+...++.+++++.-.. ..++.+.-++. .+..++..
T Consensus 285 q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~ 364 (678)
T KOG1293|consen 285 QYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYG 364 (678)
T ss_pred HHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhh
Confidence 11123322222222 2222333223334444555566666666554321 01222211111 11112111
Q ss_pred -chhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHH
Q 009514 219 -LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAI 297 (533)
Q Consensus 219 -~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 297 (533)
.-..++++.+......+....-..+..++.+|+-|+.+++++...++.. +....++.+|++++.+|+..++..+.++|
T Consensus 365 ~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg-~~~~dv~~plvqll~dp~~~i~~~~lgai 443 (678)
T KOG1293|consen 365 LEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTG-LKRNDVAQPLVQLLMDPEIMIMGITLGAI 443 (678)
T ss_pred cchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcC-CccchhHHHHHHHhhCcchhHHHHHHHHH
Confidence 1234455555555555555555778899999999999999998888888 88889999999999999999999999999
Q ss_pred HHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHH
Q 009514 298 SNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQ 377 (533)
Q Consensus 298 ~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~ 377 (533)
+|++.++++.+.++++.|+|+.+.+++.+.++.+|..++|+|.++..+.+...+...........++.+.+++++.||++
T Consensus 444 ~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq 523 (678)
T KOG1293|consen 444 CNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQ 523 (678)
T ss_pred HHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888888888999999999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHH
Q 009514 378 ALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI 457 (533)
Q Consensus 378 a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 457 (533)
++..|||+.++..+.++.+++.-+.++......+.-.+...+-.+...-+.++..+.+-+....++ +..+.+
T Consensus 524 ~fqllRNl~c~~~~svdfll~~~~~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~am~--------~~fk~l 595 (678)
T KOG1293|consen 524 CFQLLRNLTCNSRKSVDFLLEKFKDVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKKAME--------GIFKIL 595 (678)
T ss_pred HHHHHHHhhcCcHHHHHHHHHhhhHHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHHHHH--------HHHHHH
Confidence 999999999998888999988866544444433333334444455555555555544444455554 333444
Q ss_pred HHh--------hccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhh-cCCCCcHHHHHHHHHH
Q 009514 458 IKF--------LQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV-NDPCLDVKLRVKTALE 523 (533)
Q Consensus 458 v~~--------L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll-~~~~~~v~~~a~~aL~ 523 (533)
+.. ..+...+.+.++.|.+.+++|..+++..++.... ..++.+....+- +|...+++......|+
T Consensus 596 vl~~e~~~n~~q~s~~~qls~~~~~~iinl~~~~s~s~~dr~~~~-~n~i~e~~~k~~~sd~~la~ki~~~~~l~ 669 (678)
T KOG1293|consen 596 VLLAEVNENKKQLSIEQQLSLNIMSEIINLTTTDSSSNFDRSNLK-LNCIWELNNKLWNSDVSLATKIAIENGLE 669 (678)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCCCCCcccchhhcc-ccceechhhhcccchhHHHHHHHHHhccc
Confidence 332 2245678999999999999998766655444333 344444444433 3333344444333333
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.91 E-value=2.5e-20 Score=191.95 Aligned_cols=478 Identities=16% Similarity=0.186 Sum_probs=338.3
Q ss_pred ccchHHHHhhhcC---CCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCCh---HHHHHHHHHHHHHhcCCh
Q 009514 16 EENMEFLLSLLNN---ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSL---IQRDASLESIATIFKNNP 89 (533)
Q Consensus 16 ~~~i~~L~~lL~~---~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~---~v~~~al~aL~~l~~~~~ 89 (533)
+..+..|-+.|.. .+.+.......++..++..++....+.+...-..-++++.... +....-+......+...+
T Consensus 163 e~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~ 242 (708)
T PF05804_consen 163 ETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKP 242 (708)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccch
Confidence 4455666666642 2445555666777777776676666666555455555555321 111111222222222323
Q ss_pred hhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-CCCchhhhHHHHH
Q 009514 90 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAF 168 (533)
Q Consensus 90 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~a~~~L 168 (533)
.....+ ......+-.+++..+.-.| .+...|.|++.+.. ....+...|+++.|+++|+ ++.++...+...|
T Consensus 243 ~~~~~~-----~~~~kk~~~l~~kQeqLlr-v~~~lLlNLAed~~--ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fL 314 (708)
T PF05804_consen 243 EAKKDY-----EKELKKLQTLIRKQEQLLR-VAFYLLLNLAEDPR--VELKMVNKGIVSLLVKCLDRENEELLILAVTFL 314 (708)
T ss_pred hhhhhH-----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcChH--HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 222211 1122333344444333344 66788999998753 3556788999999999998 4567788888999
Q ss_pred HhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHH
Q 009514 169 SSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRS 248 (533)
Q Consensus 169 ~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~ 248 (533)
.+++-..+ ++..+.+.|.+++|++++.+. +...+..+++.|.+|+. ++..|..++..|++|.++.+|++++ .+.
T Consensus 315 kkLSi~~E-NK~~m~~~giV~kL~kLl~s~--~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~--~~~ 388 (708)
T PF05804_consen 315 KKLSIFKE-NKDEMAESGIVEKLLKLLPSE--NEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPN--FRE 388 (708)
T ss_pred HHHcCCHH-HHHHHHHcCCHHHHHHHhcCC--CHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCc--hHH
Confidence 99986554 567788999999999988765 36789999999999986 4688999999999999999998654 556
Q ss_pred HHHHHHHHHhhccccccchhhhhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC
Q 009514 249 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM 327 (533)
Q Consensus 249 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~ 327 (533)
.+..+|.++|.. +..+.. |...+++|.+++++ ..+++++.....+.+.|++.+. .+.+.+.+.|+++.|++.....
T Consensus 389 val~iLy~LS~d-d~~r~~-f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~ 465 (708)
T PF05804_consen 389 VALKILYNLSMD-DEARSM-FAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKT 465 (708)
T ss_pred HHHHHHHHhccC-HhhHHH-HhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhc
Confidence 688999999987 334444 77788999999976 4677888888999999999754 5667888889999999765443
Q ss_pred CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHH
Q 009514 328 DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA 406 (533)
Q Consensus 328 ~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~ 406 (533)
...+ .+..+.|++.+.++ .+....+ .+..+++++. .++++....++++|+|+...+.+ ...++++.+ +++.
T Consensus 466 ~D~l---LlKlIRNiS~h~~~-~k~~f~~--~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld-~~~ll~~~~-llp~ 537 (708)
T PF05804_consen 466 RDPL---LLKLIRNISQHDGP-LKELFVD--FIGDLAKIVSSGDSEEFVVECLGILANLTIPDLD-WAQLLQEYN-LLPW 537 (708)
T ss_pred ccHH---HHHHHHHHHhcCch-HHHHHHH--HHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcC-HHHHHHhCC-HHHH
Confidence 3222 23578888877643 4443332 3555666665 45788999999999999976554 344444322 8999
Q ss_pred HHHHhccC-CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc--CChhHHHHHHHHHHhhcCCC
Q 009514 407 VGRQLRIA-SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS--NDSRLRTAAVWAVLNLTCSS 483 (533)
Q Consensus 407 L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~--~~~~v~~~a~~~L~~l~~~~ 483 (533)
+.+.|... ..+.+..+++..++.++. ++.....+.. .|+++.++.+|++ .|.+.-.+.++++.++.+.
T Consensus 538 L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~-------sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h- 608 (708)
T PF05804_consen 538 LKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAK-------SGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFH- 608 (708)
T ss_pred HHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHh-------CChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcC-
Confidence 99988753 345788888999998886 4445555554 7999999999985 4678888999999999972
Q ss_pred CCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514 484 SPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 484 ~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
+.+ +...+.+.++...|+.++.|.++.+++-+-.+|.-+.++.+
T Consensus 609 -~~t--r~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~ 652 (708)
T PF05804_consen 609 -EET--REVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDE 652 (708)
T ss_pred -hHH--HHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCH
Confidence 223 33455678899999999999999999999999998887754
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.89 E-value=1.4e-19 Score=186.54 Aligned_cols=400 Identities=14% Similarity=0.122 Sum_probs=315.1
Q ss_pred hHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhcc
Q 009514 19 MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVG 97 (533)
Q Consensus 19 i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~ 97 (533)
...+-.++. ..+.+...+..+|.+++.+...+..+++.|++++|+++|++ +..+...++..|.+++.... .+..+.
T Consensus 252 ~kk~~~l~~-kQeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~E-NK~~m~- 328 (708)
T PF05804_consen 252 LKKLQTLIR-KQEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKE-NKDEMA- 328 (708)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHH-HHHHHH-
Confidence 345555555 34555667888999999999999999999999999999986 67888999999999986543 344443
Q ss_pred ccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHH
Q 009514 98 PDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKED 177 (533)
Q Consensus 98 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~ 177 (533)
..+.++.+.+++++++...+..+.++|+|++.+.. .+..++..|++|.|+.+|.++ ..+..+..+|.+++.++ .
T Consensus 329 --~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~--~R~~mV~~GlIPkLv~LL~d~-~~~~val~iLy~LS~dd-~ 402 (708)
T PF05804_consen 329 --ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPE--LRSQMVSLGLIPKLVELLKDP-NFREVALKILYNLSMDD-E 402 (708)
T ss_pred --HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHH--HHHHHHHCCCcHHHHHHhCCC-chHHHHHHHHHHhccCH-h
Confidence 36899999999999999999999999999999764 466789999999999999864 45566888899998755 4
Q ss_pred HHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC-CCHHHHHHHHHHHHH
Q 009514 178 MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCLRS 256 (533)
Q Consensus 178 ~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~-~~~~v~~~a~~~L~~ 256 (533)
.+..+...+++|.+++++...+ ++++....+..+.+++.+. .+.+.+.+.++++.|++.... .++- ..++++|
T Consensus 403 ~r~~f~~TdcIp~L~~~Ll~~~-~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRN 476 (708)
T PF05804_consen 403 ARSMFAYTDCIPQLMQMLLENS-EEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRN 476 (708)
T ss_pred hHHHHhhcchHHHHHHHHHhCC-CccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHH
Confidence 5666777889999999877653 4555666788888998764 555777788899999987543 3433 3579999
Q ss_pred HhhccccccchhhhhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC--CHHHHH
Q 009514 257 VSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRL 333 (533)
Q Consensus 257 ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~ 333 (533)
+|.+.+..+.. + .+++..|+.++.. ++++....+.++|+|+........+.+.+.+.+|.+..++..+ .+++..
T Consensus 477 iS~h~~~~k~~-f--~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~L 553 (708)
T PF05804_consen 477 ISQHDGPLKEL-F--VDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLL 553 (708)
T ss_pred HHhcCchHHHH-H--HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHH
Confidence 99985444433 3 3678888888864 5889999999999999975555665666679999999998754 467888
Q ss_pred HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC--CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh
Q 009514 334 NALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL 411 (533)
Q Consensus 334 ~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L 411 (533)
.++..++.++. ++.+...+.+.+.++.++.++. ..|.++..+.+.++..+.... +.+..++.+.+ +...+..++
T Consensus 554 E~Vi~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~-~tr~~ll~~~~-~~~ylidL~ 629 (708)
T PF05804_consen 554 EVVILLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHE-ETREVLLKETE-IPAYLIDLM 629 (708)
T ss_pred HHHHHHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcCh-HHHHHHHhccc-hHHHHHHHh
Confidence 89999999875 5678888889999999999996 457899999999999998874 35666666544 778888888
Q ss_pred ccCCchhHHHHHHHHHHHhccCChhhHHHH
Q 009514 412 RIASKAEIEIQGMYVLGNVATGKESHKEAV 441 (533)
Q Consensus 412 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 441 (533)
.+ .+++|+.-|=.+|.-++..+++....+
T Consensus 630 ~d-~N~~ir~~~d~~Ldii~e~d~~w~~ri 658 (708)
T PF05804_consen 630 HD-KNAEIRKVCDNALDIIAEYDEEWAERI 658 (708)
T ss_pred cC-CCHHHHHHHHHHHHHHHHhCHHHHHHh
Confidence 87 999999988888888887766544444
No 12
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.79 E-value=8.1e-17 Score=150.08 Aligned_cols=471 Identities=13% Similarity=0.060 Sum_probs=311.3
Q ss_pred hhhcCCCcchhHHHHHHHHHhhcCchhHHHH----HhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccc
Q 009514 24 SLLNNESENVSGLGASIISHSCKTSLEQKLL----FDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGP 98 (533)
Q Consensus 24 ~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i----~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~ 98 (533)
+.....+..+...+.++++..+..+..|..+ +..|.+++|.+...+ +..+-+.+.++|+++|+++.+.+..+...
T Consensus 49 ~~i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~l 128 (604)
T KOG4500|consen 49 SGIMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNL 128 (604)
T ss_pred cceeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhc
Confidence 3334456777778888899888666555544 446778888888877 46899999999999999999988877664
Q ss_pred cCcccHHHHHHHHhc-CCh-hhH--HHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-CC--CchhhhHHHHHHhh
Q 009514 99 DTGRTLSCIIEIVKD-RFA-RTR--LLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DP--GRVGDEASFAFSSL 171 (533)
Q Consensus 99 ~~~~~i~~l~~ll~~-~~~-~v~--~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~--~~~~~~a~~~L~~l 171 (533)
+....+-.+++-.-+ ++| ..+ ..+.+.|.|....+.. .+....+.|++|.|..++. +. ....+.......++
T Consensus 129 gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~-l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nl 207 (604)
T KOG4500|consen 129 GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRE-LRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNL 207 (604)
T ss_pred CCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHH-HHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccH
Confidence 322233333332222 222 223 3455667776665543 4566788999999999987 32 22223322222233
Q ss_pred hcC-CHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC-CC------
Q 009514 172 IAE-KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-DS------ 243 (533)
Q Consensus 172 ~~~-~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~-~~------ 243 (533)
.+- .+.......++.....++++|.+. ..+..++.++..++..+.+ +..+-.+.+.|.+..++++++. ++
T Consensus 208 ls~~~e~~~~~~~d~sl~~~l~~ll~~~-v~~d~~eM~feila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d 285 (604)
T KOG4500|consen 208 LSFVCEMLYPFCKDCSLVFMLLQLLPSM-VREDIDEMIFEILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTKKTD 285 (604)
T ss_pred HHHHHHhhhhhhccchHHHHHHHHHHHh-hccchhhHHHHHHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccchHH
Confidence 211 111223344566667788888776 4677899999999988765 4677788899999998888864 11
Q ss_pred -HHHHHHHHHHHHHHhhccccccchhhhhcC-cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHH
Q 009514 244 -SDVRSAACMCLRSVSRSIKNLSAGSFMNET-IVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLV 321 (533)
Q Consensus 244 -~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~-~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~ 321 (533)
......++....-+....+... ++...+ ++..++.+++++|......+.-+|+|+++....+ ..+++.|.++.|+
T Consensus 286 ~~~l~k~~~el~vllltGDeSMq--~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~ 362 (604)
T KOG4500|consen 286 MLNLFKRIAELDVLLLTGDESMQ--KLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLI 362 (604)
T ss_pred HHHHHHhhhhHhhhhhcCchHHH--HHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHH
Confidence 1223334444443433322222 234444 8889999999999999999999999999865544 4788889999999
Q ss_pred HhhcC-----CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 009514 322 QLSKS-----MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396 (533)
Q Consensus 322 ~ll~~-----~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 396 (533)
+.+.. ++..++.+++.||.|+....+ +|..+...|..+.++..++...|.++..-+++++-+..+.+.....+
T Consensus 363 ~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~--nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL 440 (604)
T KOG4500|consen 363 SCLMQEKDVDGNVERQHACLSALRNLMIPVS--NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACEL 440 (604)
T ss_pred HHHHHhcCCCccchhHHHHHHHHHhccccCC--chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHH
Confidence 87654 356788899999999988554 78889999999999999999999999999999999887754222222
Q ss_pred HhhcCchHHHHHHHhccCCch-hHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHH
Q 009514 397 FAEDGIILDAVGRQLRIASKA-EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWA 475 (533)
Q Consensus 397 ~~~~~~~~~~L~~~L~~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~ 475 (533)
... ...++.|+..=.+ ++- .|.-+..+.+..+...+. ..+.+.. .|..|++...+.++.+.+...+.+|..+
T Consensus 441 ~kn-~~l~ekLv~Wsks-~D~aGv~gESnRll~~lIkHs~-~kdv~~t----vpksg~ik~~Vsm~t~~hi~mqnEalVa 513 (604)
T KOG4500|consen 441 AKN-PELFEKLVDWSKS-PDFAGVAGESNRLLLGLIKHSK-YKDVILT----VPKSGGIKEKVSMFTKNHINMQNEALVA 513 (604)
T ss_pred hcC-HHHHHHHHHhhhC-CccchhhhhhhHHHHHHHHhhH-hhhhHhh----ccccccHHHHHHHHHHhhHHHhHHHHHH
Confidence 221 1245555554334 443 366667777766665422 1222221 1237888999999999999999999998
Q ss_pred HHhhcCCCCC------CcHHHHHHHHHCCcHHHHHhhhcC
Q 009514 476 VLNLTCSSSP------GSSGRLVKLHDAGIVSHVKNMVND 509 (533)
Q Consensus 476 L~~l~~~~~~------~~~~~~~~l~~~g~~~~L~~ll~~ 509 (533)
+.-+....-. .+.--+..+.+.|+-.....+...
T Consensus 514 l~~~~~~yl~~~~kd~ea~~l~~~lik~~~~~~~a~~I~~ 553 (604)
T KOG4500|consen 514 LLSTESKYLIVIGKDLEAVFLAILLIKHGYANVAATIIAS 553 (604)
T ss_pred HHHHHHHhccccchhHHHHHHHHHHHHhhhhhhhhHHhcC
Confidence 8776642111 111223455666665555555543
No 13
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2.2e-16 Score=154.46 Aligned_cols=494 Identities=14% Similarity=0.133 Sum_probs=307.9
Q ss_pred ccccCCCCCccccc-ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHH--H---hcCchHHHHHhhcC-ChHHH
Q 009514 2 IYQSKMAPKYDFLQ-EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLL--F---DAGVLKRLTSLLGG-SLIQR 74 (533)
Q Consensus 2 ~~~~~~~~~~~l~~-~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i--~---~~g~i~~L~~lL~~-~~~v~ 74 (533)
|++|+++++..+-. ++.+|.|..+|.+++...+|-|..+|.++|+.+.+...- . -.-.+|.++++.++ ++++|
T Consensus 112 ivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiR 191 (885)
T KOG2023|consen 112 IVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIR 191 (885)
T ss_pred heeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHH
Confidence 78888888766654 789999999999999999999999999999776542211 1 12356777777776 78999
Q ss_pred HHHHHHHHHHhcCChhh-hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHh
Q 009514 75 DASLESIATIFKNNPEV-VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLEL 153 (533)
Q Consensus 75 ~~al~aL~~l~~~~~~~-~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l 153 (533)
..|+.|+.......+.. -..+ ...+..++.+-.+++++||...+..+..+....+.+.. ---.++++.+++.
T Consensus 192 s~A~~cvNq~i~~~~qal~~~i-----D~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~--phl~~IveyML~~ 264 (885)
T KOG2023|consen 192 SHAVGCVNQFIIIQTQALYVHI-----DKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV--PHLDNIVEYMLQR 264 (885)
T ss_pred HHHHhhhhheeecCcHHHHHHH-----HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc--cchHHHHHHHHHH
Confidence 99999998865443322 1111 45677788888999999999999999998876543221 1124678888888
Q ss_pred cCC-CCchhhhHHHHHHhhhcCCHHHHHHHHH--cCcHHHHHHhhhcCC----------C--------------------
Q 009514 154 LDD-PGRVGDEASFAFSSLIAEKEDMQKLAFE--VNGVDKLYNHLQKGS----------L-------------------- 200 (533)
Q Consensus 154 l~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~L~~~~----------~-------------------- 200 (533)
.++ +..+-.+|++....++... -+...... ...+|.|++-+..+. .
T Consensus 265 tqd~dE~VALEACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~ 343 (885)
T KOG2023|consen 265 TQDVDENVALEACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKE 343 (885)
T ss_pred ccCcchhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchh
Confidence 775 4567788888777777543 22111111 133455544221110 0
Q ss_pred ------------------------CchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009514 201 ------------------------HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRS 256 (533)
Q Consensus 201 ------------------------~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ 256 (533)
++.+|...+.+|.-++. -.++.+. .-.+|.+-+.|.++.|.+|+++.-+++.
T Consensus 344 ~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan---vf~~elL-~~l~PlLk~~L~~~~W~vrEagvLAlGA 419 (885)
T KOG2023|consen 344 HGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN---VFGDELL-PILLPLLKEHLSSEEWKVREAGVLALGA 419 (885)
T ss_pred ccCccccccccccccccccccccccccHhhccHHHHHHHHH---hhHHHHH-HHHHHHHHHHcCcchhhhhhhhHHHHHH
Confidence 02345444445544442 1111111 1246666667778999999999999999
Q ss_pred Hhhccccccchhhh--hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chhHHHHHHhCcHHHHHHhhcCCCHHHHH
Q 009514 257 VSRSIKNLSAGSFM--NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF-TTRRSTFIRLGGVKLLVQLSKSMDSTIRL 333 (533)
Q Consensus 257 ls~~~~~~~~~~~~--~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 333 (533)
++..+-+. ++ -...+|.|+++|.+..+-||.-+||+|+..+.-. .......+ ...+..|++.+-+++..+++
T Consensus 420 IAEGcM~g----~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f-~pvL~~ll~~llD~NK~VQE 494 (885)
T KOG2023|consen 420 IAEGCMQG----FVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF-KPVLEGLLRRLLDSNKKVQE 494 (885)
T ss_pred HHHHHhhh----cccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh-HHHHHHHHHHHhcccHHHHH
Confidence 99863221 22 2346788899999999999999999998866411 11111122 13455555556678899999
Q ss_pred HHHHHHHHhhccCChHhHH---HHHHh--------------------------------------hcHHHHH---hhhCC
Q 009514 334 NALRALRNLIFLAEDKCKE---EIFME--------------------------------------LTASLLA---SLICD 369 (533)
Q Consensus 334 ~al~aL~~l~~~~~~~~~~---~i~~~--------------------------------------~~~~~l~---~lL~~ 369 (533)
+|+.++..+-...+++.-. .++.. ..++.|+ .+|++
T Consensus 495 AAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd 574 (885)
T KOG2023|consen 495 AACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSD 574 (885)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCc
Confidence 9999998886654442211 11110 0122222 13333
Q ss_pred CC-------------------------hhHHHHHHHHHHHh----hcCC---------------------------cchH
Q 009514 370 PE-------------------------PSVQEQALALVRNL----VDGR---------------------------INSV 393 (533)
Q Consensus 370 ~~-------------------------~~v~~~a~~~L~~l----~~~~---------------------------~~~~ 393 (533)
+| +.|-..++.++.+. +... ...+
T Consensus 575 ~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~i 654 (885)
T KOG2023|consen 575 SDKDLFPLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHI 654 (885)
T ss_pred ccchHHHHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhch
Confidence 33 23444455554422 1111 1111
Q ss_pred HHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHH
Q 009514 394 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAV 473 (533)
Q Consensus 394 ~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~ 473 (533)
+.++...+ +++++...+.+ +.++|++.|...|+.++....++....+ .++++.+...+...+..+..+|+
T Consensus 655 e~Lva~sn-l~~lll~C~~D-~~peVRQS~FALLGDltk~c~~~v~p~~--------~~fl~~lg~Nl~~~~isv~nNA~ 724 (885)
T KOG2023|consen 655 EPLVAQSN-LLDLLLQCLQD-EVPEVRQSAFALLGDLTKACFEHVIPNL--------ADFLPILGANLNPENISVCNNAI 724 (885)
T ss_pred HHHhhhcc-HHHHHHHHhcc-CChHHHHHHHHHHHHHHHHHHHhccchH--------HHHHHHHhhcCChhhchHHHHHH
Confidence 11111111 56677777777 8899999999999999986655555554 47778888888878889999999
Q ss_pred HHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCC--CCcHHHHHHHHHHHHhh
Q 009514 474 WAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP--CLDVKLRVKTALEQFNS 527 (533)
Q Consensus 474 ~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~--~~~v~~~a~~aL~~~~~ 527 (533)
|+++.++.. ...+....+ ..++..|...++.+ ...+-++.+-.++++-.
T Consensus 725 WAiGeia~k---~g~~~~~~v--~~vl~~L~~iin~~~~~~tllENtAITIGrLg~ 775 (885)
T KOG2023|consen 725 WAIGEIALK---MGLKMKQYV--SPVLEDLITIINRQNTPKTLLENTAITIGRLGY 775 (885)
T ss_pred HHHHHHHHH---hchhhhhHH--HHHHHHHHHHhcccCchHHHHHhhhhhhhhhhc
Confidence 999999952 112222221 12455666665533 22455666666666543
No 14
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=3.5e-14 Score=148.31 Aligned_cols=434 Identities=15% Similarity=0.105 Sum_probs=290.3
Q ss_pred HHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhc---C-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514 21 FLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG---G-SLIQRDASLESIATIFKNNPEVVSQFV 96 (533)
Q Consensus 21 ~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~---~-~~~v~~~al~aL~~l~~~~~~~~~~~~ 96 (533)
.|....+.+.++|+..-+.+++.++++. +-+ +|++.+--+.. + ++..|+.|+..|+.+...-++......
T Consensus 84 lL~~~~~E~~~~vr~k~~dviAeia~~~-----l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~ 157 (1075)
T KOG2171|consen 84 LLEIIQSETEPSVRHKLADVIAEIARND-----LPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHL 157 (1075)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHhc-----ccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhH
Confidence 3444455677899999999999988432 222 55544443333 4 568999999999998654433211000
Q ss_pred cccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-----CCchhhhHHHHHHhh
Q 009514 97 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-----PGRVGDEASFAFSSL 171 (533)
Q Consensus 97 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~a~~~L~~l 171 (533)
....+-+.+.+.+++..||..|++++..++...+........-...+|.++..+.+ +.+.-..+..+|..+
T Consensus 158 ----~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El 233 (1075)
T KOG2171|consen 158 ----DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIEL 233 (1075)
T ss_pred ----HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHH
Confidence 11222234456677777999999999998876642112222234678888887762 233346778888888
Q ss_pred hcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhh--hhchHHHHHHhcCCCC------
Q 009514 172 IAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL--SLQVLKLVVDALAHDS------ 243 (533)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~--~~~~l~~l~~~L~~~~------ 243 (533)
+...+.+.+..+. ..+..-..+..+...+..+|..|+..|..++.+-+...+... ....++.++..+.+..
T Consensus 234 ~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~ 312 (1075)
T KOG2171|consen 234 LESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWS 312 (1075)
T ss_pred HhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhc
Confidence 8777765443322 334555566666666788999999999998876443333222 2346777777775311
Q ss_pred ----------HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 009514 244 ----------SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR 313 (533)
Q Consensus 244 ----------~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~ 313 (533)
..-...|..+|-.++.+.+.. .+-....+.+-.++.++++.-|.+++.+|+.++.+..+.....+
T Consensus 313 ~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~----~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l- 387 (1075)
T KOG2171|consen 313 NEDDLDEDDEETPYRAAEQALDRLALHLGGK----QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL- 387 (1075)
T ss_pred cccccccccccCcHHHHHHHHHHHHhcCChh----hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-
Confidence 124556778888887763321 23345566677778899999999999999999988776544433
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC-CChhHHHHHHHHHHHhhcCCcch
Q 009514 314 LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PEPSVQEQALALVRNLVDGRINS 392 (533)
Q Consensus 314 ~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~ 392 (533)
..+++..+..++++++.||.+|+.+++.++.+-.|+..+.. ++-.++.|+..+.+ .++.|+..|+.++-|++..++..
T Consensus 388 ~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~-~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~ 466 (1075)
T KOG2171|consen 388 PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH-HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKS 466 (1075)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH-HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHH
Confidence 35777888889999999999999999999887766554433 33346677777765 46799999999999999776543
Q ss_pred HHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCC----hhH
Q 009514 393 VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND----SRL 468 (533)
Q Consensus 393 ~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~----~~v 468 (533)
+ +-.+-+.+++.+...|..++++.+++.+..+|+.+|....+.....++ .++|.|.++|++.+ ..+
T Consensus 467 ~--l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d--------~~Mp~L~~~L~n~~~~d~r~L 536 (1075)
T KOG2171|consen 467 I--LEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFD--------RLMPLLKNFLQNADDKDLREL 536 (1075)
T ss_pred H--HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHH--------HHHHHHHHHHhCCCchhhHHH
Confidence 2 222112266644445555588999999999999999866656666664 57789999998654 346
Q ss_pred HHHHHHHHHhhcC
Q 009514 469 RTAAVWAVLNLTC 481 (533)
Q Consensus 469 ~~~a~~~L~~l~~ 481 (533)
|-.+..+++-++.
T Consensus 537 rgktmEcisli~~ 549 (1075)
T KOG2171|consen 537 RGKTMECLSLIAR 549 (1075)
T ss_pred HhhHHHHHHHHHH
Confidence 6666666666654
No 15
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.74 E-value=5.4e-16 Score=156.32 Aligned_cols=363 Identities=17% Similarity=0.120 Sum_probs=271.0
Q ss_pred ccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHH--H
Q 009514 102 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKED--M 178 (533)
Q Consensus 102 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~--~ 178 (533)
-.++..+.++.+.++.+|.+|+.-+..++.... ..+..+.+.|+||.|+.++.. ..+++..|+++|.|+..+... .
T Consensus 233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~-~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDN-KIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred cccHHHHHHHhccChhhhHHHHHHHHHHHhhhH-HHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence 467889999999999999999999999987664 356667778999999999994 578999999999999976554 5
Q ss_pred HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHH-hcC-------C------CCH
Q 009514 179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD-ALA-------H------DSS 244 (533)
Q Consensus 179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~-~L~-------~------~~~ 244 (533)
.-.+.+++|++.++++|... .+.++++.+...|++|+++ +.++..++.. .+..|.. .+. + ...
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t-~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~ 388 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHT-QDDEVRELITGILWNLSSN-DALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDS 388 (717)
T ss_pred chhhhhcCChHHHHHHHHhh-cchHHHHHHHHHHhcccch-hHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccc
Confidence 55678899999999988865 3578999999999999987 4555555543 2222222 111 1 125
Q ss_pred HHHHHHHHHHHHHhhccccccchhhhh-cCcHHHHHHhhc------CCCHHHHHHHHHHHHHHhcCCc------------
Q 009514 245 DVRSAACMCLRSVSRSIKNLSAGSFMN-ETIVIPLVRLLD------DTSTAVQVAALGAISNIVVDFT------------ 305 (533)
Q Consensus 245 ~v~~~a~~~L~~ls~~~~~~~~~~~~~-~~~i~~Lv~lL~------~~~~~v~~~a~~aL~nl~~~~~------------ 305 (533)
.+-..+..||+|++......++. +.+ .|.|..|+..++ +.|....++|...+.|+.....
T Consensus 389 ~vf~n~tgcLRNlSs~~~eaR~~-mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~ 467 (717)
T KOG1048|consen 389 TVFRNVTGCLRNLSSAGQEAREQ-MRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLA 467 (717)
T ss_pred eeeehhhhhhccccchhHHHHHH-HhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhh
Confidence 67889999999998754555555 554 688999998885 4477788999999999875322
Q ss_pred -------------------hhHHH----------------------HHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhh
Q 009514 306 -------------------TRRST----------------------FIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLI 343 (533)
Q Consensus 306 -------------------~~~~~----------------------~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~ 343 (533)
..+.+ +.+..++.....++. +.++.+.++++.+|.|++
T Consensus 468 ~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNlt 547 (717)
T KOG1048|consen 468 NIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLT 547 (717)
T ss_pred cccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhh
Confidence 00011 001123444333343 457889999999999998
Q ss_pred ccCCh---HhHHHH-HHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCc---
Q 009514 344 FLAED---KCKEEI-FMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK--- 416 (533)
Q Consensus 344 ~~~~~---~~~~~i-~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~--- 416 (533)
-+..+ ..+..+ ..+.+++.++++|+.++..|...++.+|+||+.+- ..+.++... .++-|++.|.++..
T Consensus 548 A~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rnk~ligk~--a~~~lv~~Lp~~~~~~~ 623 (717)
T KOG1048|consen 548 AGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RNKELIGKY--AIPDLVRCLPGSGPSTS 623 (717)
T ss_pred ccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hhhhhhhcc--hHHHHHHhCcCCCCCcC
Confidence 65422 344445 67889999999999999999999999999999774 233444433 78888888876433
Q ss_pred --hhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCC-hhHHHHHHHHHHhhc
Q 009514 417 --AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND-SRLRTAAVWAVLNLT 480 (533)
Q Consensus 417 --~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~-~~v~~~a~~~L~~l~ 480 (533)
+++...+|.+|.|+...+......+++ .+.++.|+.+.++.. +.+.++|...+..|.
T Consensus 624 ~sedtv~~vc~tl~niv~~~~~nAkdl~~-------~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW 683 (717)
T KOG1048|consen 624 LSEDTVRAVCHTLNNIVRKNVLNAKDLLE-------IKGIPKLRLISKSQHSPKEFKAASSVLDVLW 683 (717)
T ss_pred chHHHHHHHHHhHHHHHHHhHHHHHHHHh-------ccChHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 688899999999999777666666765 677899999988754 478888888888877
No 16
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=9.5e-16 Score=138.73 Aligned_cols=293 Identities=20% Similarity=0.219 Sum_probs=227.2
Q ss_pred CcccccccchHHHHhhhc--CCCcchhHHHHHHHHHhhcC-chhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHH
Q 009514 10 KYDFLQEENMEFLLSLLN--NESENVSGLGASIISHSCKT-SLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATI 84 (533)
Q Consensus 10 ~~~l~~~~~i~~L~~lL~--~~~~~v~~~a~~~l~~~~~~-~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l 84 (533)
-+||++..++..++.+|. +++.++.......+.+.|-. ..+|..+++.+.+|.+.+.|.+ -.++......++..|
T Consensus 138 qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l 217 (461)
T KOG4199|consen 138 QPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRAL 217 (461)
T ss_pred CcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHh
Confidence 389999999999999998 45678888888899987754 4569999999999999998875 234444455677777
Q ss_pred hcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--CCCchhh
Q 009514 85 FKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGD 162 (533)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~ 162 (533)
..+++ +.-.| + .. .+| ...+...|++..|++.+. -++.+..
T Consensus 218 ~~dDD-iRV~f-----g-----------------------------~a-h~h-Ar~ia~e~~l~~L~Eal~A~~dp~~L~ 260 (461)
T KOG4199|consen 218 LTDDD-IRVVF-----G-----------------------------QA-HGH-ARTIAKEGILTALTEALQAGIDPDSLV 260 (461)
T ss_pred cCCCc-eeeec-----c-----------------------------hh-hHH-HHHHHHhhhHHHHHHHHHccCCccHHH
Confidence 66543 21111 0 00 012 234667778888888887 2467778
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhH---HHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc
Q 009514 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF---EGILLALADMCSKLECCRSRCLSLQVLKLVVDAL 239 (533)
Q Consensus 163 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~---~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L 239 (533)
+.+.+|..++-.++-+ +.+.+.||+..+++++.+++ +...| ..++..|..+++++ +++..+++.|+.+.++.++
T Consensus 261 ~l~~tl~~lAVr~E~C-~~I~e~GGl~tl~~~i~d~n-~~~~r~l~k~~lslLralAG~D-svKs~IV~~gg~~~ii~l~ 337 (461)
T KOG4199|consen 261 SLSTTLKALAVRDEIC-KSIAESGGLDTLLRCIDDSN-EQGNRTLAKTCLSLLRALAGSD-SVKSTIVEKGGLDKIITLA 337 (461)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHccCHHHHHHHHhhhc-hhhHHHHHHHHHHHHHHHhCCC-chHHHHHHhcChHHHHHHH
Confidence 8889999999877766 56789999999999998864 33334 56788888998764 7889999999999999987
Q ss_pred C--CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CC-CHHHHHHHHHHHHHHhcCCchhHHHHHHhC
Q 009514 240 A--HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DT-STAVQVAALGAISNIVVDFTTRRSTFIRLG 315 (533)
Q Consensus 240 ~--~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~ 315 (533)
. ..+|.|...++.++.-++...+..... +++.|+....++.|+ +| ...+|..|||.|+|++....++++.++ ..
T Consensus 338 ~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~-~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~ 415 (461)
T KOG4199|consen 338 LRHSDDPLVIQEVMAIISILCLRSPDHSAK-AIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-AN 415 (461)
T ss_pred HHcCCChHHHHHHHHHHHHHHhcCcchHHH-HHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hc
Confidence 4 568999999999999998654554444 789999999999997 44 568999999999999988878776666 56
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514 316 GVKLLVQLSKSMDSTIRLNALRALRNLIF 344 (533)
Q Consensus 316 ~i~~L~~ll~~~~~~~~~~al~aL~~l~~ 344 (533)
|++.|+...+..++..+..+-.+|..|-.
T Consensus 416 GiE~Li~~A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 416 GIEKLIRTAKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred cHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence 78999999998888888888888888743
No 17
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=1.9e-16 Score=154.92 Aligned_cols=440 Identities=15% Similarity=0.161 Sum_probs=273.9
Q ss_pred hcCchHHHHHhhcC----ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhh
Q 009514 56 DAGVLKRLTSLLGG----SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRN 131 (533)
Q Consensus 56 ~~g~i~~L~~lL~~----~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 131 (533)
++.++..+.++|++ +..+|..+...+-++-. .|+. ...+.-++--.++.+..+|..|...|.|-.+
T Consensus 8 ~e~~l~ql~~lLk~s~Spn~~~~~~~~~~leq~~~-~pdf---------nnYL~~IL~~~~~~d~~~Rs~aGLlLKNnvr 77 (885)
T KOG2023|consen 8 DEQGLQQLAQLLKNSQSPNSETRNNVQEKLEQFNL-FPDF---------NNYLIYILIRAKSEDVPTRSLAGLLLKNNVR 77 (885)
T ss_pred cHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhc-ccch---------hceeeEEEecccccchhHHHHhhhhHhcccc
Confidence 35567788888874 45788888888888654 3433 2233334445567778888888888888665
Q ss_pred cCCCcchhhhhHhhhHHHHHHhcCCCCc-hhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHH
Q 009514 132 ASPCYLQDVGIKTKLINNLLELLDDPGR-VGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILL 210 (533)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~ 210 (533)
............ -.-...++-+.+.++ ++...--+++.+++ ..+.+.+ ..++|.|+++|.+++ ....+.|+.
T Consensus 78 ~~~~~~~~~~~~-yiKs~~l~~lgd~~~lIr~tvGivITTI~s-~~~~~~w---pelLp~L~~~L~s~d--~n~~EgA~~ 150 (885)
T KOG2023|consen 78 GHYNSIPSEVLD-YIKSECLHGLGDASPLIRATVGIVITTIAS-TGGLQHW---PELLPQLCELLDSPD--YNTCEGAFG 150 (885)
T ss_pred ccccCCChHHHH-HHHHHHHhhccCchHHHHhhhhheeeeeec-ccccccc---hhHHHHHHHHhcCCc--ccccchhHH
Confidence 543222211111 122233444555433 33333334444442 2222222 356899999887764 567899999
Q ss_pred HHHHhhccchhhhHhhh-h---hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC
Q 009514 211 ALADMCSKLECCRSRCL-S---LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS 286 (533)
Q Consensus 211 aL~~l~~~~~~~~~~~~-~---~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 286 (533)
||..+|.++.+.-+.-. + .-.+|.++++.+++++.+|..|..|+..+--..... -...-..+++.|..+-.+++
T Consensus 151 AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa--l~~~iD~Fle~lFalanD~~ 228 (885)
T KOG2023|consen 151 ALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA--LYVHIDKFLEILFALANDED 228 (885)
T ss_pred HHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH--HHHHHHHHHHHHHHHccCCC
Confidence 99999976544322211 1 137899999999999999999999997764331111 11233578889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHh--hcHHHHH
Q 009514 287 TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME--LTASLLA 364 (533)
Q Consensus 287 ~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~--~~~~~l~ 364 (533)
++||...|.++..|.....+ +-.-.-.++++.+++..++.++.+-..|+.....++... .++..+... ..+|.|+
T Consensus 229 ~eVRk~vC~alv~Llevr~d-kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp--i~~~~L~p~l~kliPvLl 305 (885)
T KOG2023|consen 229 PEVRKNVCRALVFLLEVRPD-KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP--ICKEVLQPYLDKLIPVLL 305 (885)
T ss_pred HHHHHHHHHHHHHHHHhcHH-hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHHHHH
Confidence 99999999999999854333 211222467777888888889999999999998888643 344443332 2345544
Q ss_pred hhhC--CCC-----------------hhHHH-----------------------------HHHHHHHHhhcCCcchHHHH
Q 009514 365 SLIC--DPE-----------------PSVQE-----------------------------QALALVRNLVDGRINSVEYI 396 (533)
Q Consensus 365 ~lL~--~~~-----------------~~v~~-----------------------------~a~~~L~~l~~~~~~~~~~i 396 (533)
+-+. +.| .+++- -.-|-|+.++...-+....+
T Consensus 306 ~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv 385 (885)
T KOG2023|consen 306 SGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV 385 (885)
T ss_pred ccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh
Confidence 4331 000 00000 00122222221111111223
Q ss_pred Hhhc--CchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHH
Q 009514 397 FAED--GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVW 474 (533)
Q Consensus 397 ~~~~--~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~ 474 (533)
+.+. ..+++.|...|.+ ..+.+++++..+++.+|.|+. +.++.+ ...++|+++.+|.+..+-||.-+||
T Consensus 386 f~~elL~~l~PlLk~~L~~-~~W~vrEagvLAlGAIAEGcM---~g~~p~-----LpeLip~l~~~L~DKkplVRsITCW 456 (885)
T KOG2023|consen 386 FGDELLPILLPLLKEHLSS-EEWKVREAGVLALGAIAEGCM---QGFVPH-----LPELIPFLLSLLDDKKPLVRSITCW 456 (885)
T ss_pred hHHHHHHHHHHHHHHHcCc-chhhhhhhhHHHHHHHHHHHh---hhcccc-----hHHHHHHHHHHhccCccceeeeeee
Confidence 3322 1145666666666 788999999999999998864 444442 2468899999999999999999999
Q ss_pred HHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514 475 AVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 475 ~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
+|++++.-.... .+.+.+. -++..|.+.+-|++..|||.|..|+..+.+.|.
T Consensus 457 TLsRys~wv~~~--~~~~~f~--pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 457 TLSRYSKWVVQD--SRDEYFK--PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred eHhhhhhhHhcC--ChHhhhH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 999998411111 1222221 124445555557899999999999999977653
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=4.1e-15 Score=134.70 Aligned_cols=305 Identities=15% Similarity=0.194 Sum_probs=244.2
Q ss_pred chhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHh
Q 009514 159 RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA 238 (533)
Q Consensus 159 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~ 238 (533)
.+..++..+|..+....++ ++++.++..++++|.....+.++....+..+..-|-.++.+|+.+++.++++.+.+.
T Consensus 122 ~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~ 197 (461)
T KOG4199|consen 122 SVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQV 197 (461)
T ss_pred hHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHH
Confidence 4567888888888776665 467888999999998776667777788888888888889999999999999999977
Q ss_pred cC-CCCHHHHHHHHHHHHHHhhccccccch---------hhhhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchh
Q 009514 239 LA-HDSSDVRSAACMCLRSVSRSIKNLSAG---------SFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTR 307 (533)
Q Consensus 239 L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~---------~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~ 307 (533)
|. ++..++....+++++-|... +..|-. .|...|++..|++.++. -+|++....+.+|..++-. .+.
T Consensus 198 l~~~gk~~~VRel~~a~r~l~~d-DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~ 275 (461)
T KOG4199|consen 198 LNREGKTRTVRELYDAIRALLTD-DDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEI 275 (461)
T ss_pred HcccCccHHHHHHHHHHHHhcCC-CceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHH
Confidence 76 44556778899999998765 222211 14677888999999973 4789999999999999964 567
Q ss_pred HHHHHHhCcHHHHHHhhcCCC-HH---HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC--CCChhHHHHHHHH
Q 009514 308 RSTFIRLGGVKLLVQLSKSMD-ST---IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALAL 381 (533)
Q Consensus 308 ~~~~~~~~~i~~L~~ll~~~~-~~---~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~--~~~~~v~~~a~~~ 381 (533)
.+.+.+.||+..+++.+.+.+ .. ....++..|..++.+. ..|..+++.|+.+.++.++. +++|.|.+.++.+
T Consensus 276 C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~D--svKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~ 353 (461)
T KOG4199|consen 276 CKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSD--SVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAI 353 (461)
T ss_pred HHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCC--chHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHH
Confidence 779999999999999998744 33 3456778888887644 48999999999999999873 6789999999999
Q ss_pred HHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCc-hhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHh
Q 009514 382 VRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK-AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF 460 (533)
Q Consensus 382 L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 460 (533)
+..++...|+....+++.|+ -...++-+.-+|. ..|+.++||+|.|++..+...+..++. ..+..|+..
T Consensus 354 i~~l~LR~pdhsa~~ie~G~--a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~--------~GiE~Li~~ 423 (461)
T KOG4199|consen 354 ISILCLRSPDHSAKAIEAGA--ADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLA--------NGIEKLIRT 423 (461)
T ss_pred HHHHHhcCcchHHHHHhcch--HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHh--------ccHHHHHHH
Confidence 99999999998888888774 3344444554454 579999999999999988777777774 455889998
Q ss_pred hccCChhHHHHHHHHHHhhcC
Q 009514 461 LQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 461 L~~~~~~v~~~a~~~L~~l~~ 481 (533)
-++.++..+..+..+|..|..
T Consensus 424 A~~~h~tce~~akaALRDLGc 444 (461)
T KOG4199|consen 424 AKANHETCEAAAKAALRDLGC 444 (461)
T ss_pred HHhcCccHHHHHHHHHHhcCc
Confidence 888999999999999999886
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=9.5e-14 Score=145.15 Aligned_cols=472 Identities=15% Similarity=0.135 Sum_probs=310.8
Q ss_pred chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514 18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQF 95 (533)
Q Consensus 18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~~~~ 95 (533)
....|+.-|.++|-+++..|-+.+.+....+. .++.|..++.. ++.+|.-|+--+++++.. ++..+
T Consensus 5 ~l~qLl~~l~spDn~vr~~Ae~~l~~~~~~~~---------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~---~w~~l 72 (1075)
T KOG2171|consen 5 PLEQLLQQLLSPDNEVRRQAEEALETLAKTEP---------LLPALAHILATSADPQVRQLAAVLLRKLLTK---HWSRL 72 (1075)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhhcccc---------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHH---HhhcC
Confidence 34556666777888999999999998874333 67788888875 678998888888887643 33333
Q ss_pred ccccCcccHHHHHHHH-hcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhc
Q 009514 96 VGPDTGRTLSCIIEIV-KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIA 173 (533)
Q Consensus 96 ~~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~ 173 (533)
........-..++..+ +.+.+.+|..-+.....+++..- +. .+.+.++.|++..++ ++..|+.|..+|+.+..
T Consensus 73 ~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l----~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~ 147 (1075)
T KOG2171|consen 73 SAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDL----PE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPE 147 (1075)
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcc----cc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhh
Confidence 2111123344556544 45677899998999888888542 22 567888888888874 67889999999998875
Q ss_pred CCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhh-chHHHHHHhc----CCCCHHHHH
Q 009514 174 EKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL-QVLKLVVDAL----AHDSSDVRS 248 (533)
Q Consensus 174 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~-~~l~~l~~~L----~~~~~~v~~ 248 (533)
.-......-+ ....+.|.+.+.+++ .+ +|..++++++.++...+......... ..+|.++..+ +.++...-.
T Consensus 148 ~~~~~~~~~~-~~l~~lf~q~~~d~s-~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~ 224 (1075)
T KOG2171|consen 148 TFGNTLQPHL-DDLLRLFSQTMTDPS-SP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAK 224 (1075)
T ss_pred hhccccchhH-HHHHHHHHHhccCCc-ch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHH
Confidence 4332211100 112344555565553 34 99999999999887654222222222 3455555544 566777777
Q ss_pred HHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCchhHH--HHHHhCcHHHHHHhh
Q 009514 249 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAALGAISNIVVDFTTRRS--TFIRLGGVKLLVQLS 324 (533)
Q Consensus 249 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~--~~~~~~~i~~L~~ll 324 (533)
.+..+|..+....+..-+. .-..+++.-.++.++ -+..+|..|+..|..++..-+...+ ...-...++.++.++
T Consensus 225 ~~l~~l~El~e~~pk~l~~--~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~m 302 (1075)
T KOG2171|consen 225 SALEALIELLESEPKLLRP--HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMM 302 (1075)
T ss_pred HHHHHHHHHHhhchHHHHH--HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhc
Confidence 8888888887765543322 122344555555543 4789999999999988864221111 112233455555554
Q ss_pred cCC--C--------------HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514 325 KSM--D--------------STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 325 ~~~--~--------------~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~ 388 (533)
... + ..-...|..++-.++.+-+++ .+-.-.++.+-.++.+++++.|..++.+|+.++.+
T Consensus 303 te~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~----~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EG 378 (1075)
T KOG2171|consen 303 TEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK----QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEG 378 (1075)
T ss_pred CCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh----hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 321 0 113455666776666655431 11112356677788999999999999999999999
Q ss_pred CcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC-Chh
Q 009514 389 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSR 467 (533)
Q Consensus 389 ~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~-~~~ 467 (533)
+.+.....+. .+++.+...|.+ +++.||.+|+.+++++++......+.... .-+.|.|+..+.++ +..
T Consensus 379 c~~~m~~~l~---~Il~~Vl~~l~D-phprVr~AA~naigQ~stdl~p~iqk~~~-------e~l~~aL~~~ld~~~~~r 447 (1075)
T KOG2171|consen 379 CSDVMIGNLP---KILPIVLNGLND-PHPRVRYAALNAIGQMSTDLQPEIQKKHH-------ERLPPALIALLDSTQNVR 447 (1075)
T ss_pred cHHHHHHHHH---HHHHHHHhhcCC-CCHHHHHHHHHHHHhhhhhhcHHHHHHHH-------HhccHHHHHHhcccCchH
Confidence 8765444333 378888888888 99999999999999999865544444432 44556888888775 579
Q ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHH-HHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514 468 LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVS-HVKNMVNDPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 468 v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~-~L~~ll~~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
|+.+|+.++-|+... ...+...... .+.+. .|..|+.++.+.+++.+.+||+...+-+.
T Consensus 448 V~ahAa~al~nf~E~---~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 448 VQAHAAAALVNFSEE---CDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHHHHHHHHHHHHHh---CcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 999999999999963 1222222221 23444 55556678899999999999999877654
No 20
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.71 E-value=5.1e-14 Score=147.63 Aligned_cols=445 Identities=19% Similarity=0.201 Sum_probs=291.6
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF 95 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~ 95 (533)
.+.+..+.++.+.+...+..+-..+..+...+.....+ .+..+.+-|.+ ++.+|..|+.++++++ +++...
T Consensus 42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~-- 113 (526)
T PF01602_consen 42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAE-- 113 (526)
T ss_dssp STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHH--
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhh--
Confidence 56778888888888888888777777777555542222 45566666766 7789999999999987 455543
Q ss_pred ccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcC
Q 009514 96 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAE 174 (533)
Q Consensus 96 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~ 174 (533)
..++.+.+++.++++.||..|+.++..+++..++. .... .++.+.+++.| ++.++..|..++..+ ..
T Consensus 114 ------~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~----~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~ 181 (526)
T PF01602_consen 114 ------PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL----VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KC 181 (526)
T ss_dssp ------HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC----HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HC
T ss_pred ------HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH----HHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-cc
Confidence 34777889999999999999999999999876431 2223 79999999985 456888888888888 33
Q ss_pred CHHHHHHHHHcCcHHHHHHhhhc--CCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHH
Q 009514 175 KEDMQKLAFEVNGVDKLYNHLQK--GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACM 252 (533)
Q Consensus 175 ~~~~~~~~~~~~~l~~L~~~L~~--~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~ 252 (533)
++.... ..++.+++.|.+ ...+|-.+..+++.+..++...+..... ...++.+..++++.++.|...++.
T Consensus 182 ~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~ 253 (526)
T PF01602_consen 182 NDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIR 253 (526)
T ss_dssp THHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHH
Confidence 333211 234444443331 1234667888888888887655443211 467888888888889999999999
Q ss_pred HHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHH
Q 009514 253 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIR 332 (533)
Q Consensus 253 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~ 332 (533)
++..+....+ ....++++|++++.+++++++..++.+|..++.... ..+. ..-..+..+..+++..+|
T Consensus 254 ~i~~l~~~~~-------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~----~~v~-~~~~~~~~l~~~~d~~Ir 321 (526)
T PF01602_consen 254 LIIKLSPSPE-------LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP----PAVF-NQSLILFFLLYDDDPSIR 321 (526)
T ss_dssp HHHHHSSSHH-------HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH----HHHG-THHHHHHHHHCSSSHHHH
T ss_pred HHHHhhcchH-------HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc----hhhh-hhhhhhheecCCCChhHH
Confidence 9988765422 234678889999999999999999999999986541 2222 222223333447788899
Q ss_pred HHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhh-CCCChhHHHHHHHHHHHhhcCCcchHHHH-------HhhcC---
Q 009514 333 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQEQALALVRNLVDGRINSVEYI-------FAEDG--- 401 (533)
Q Consensus 333 ~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-------~~~~~--- 401 (533)
..++..|.+++.. .+-.. .++.+.+.+ ..++.+++..++..++.++...+...... +..++
T Consensus 322 ~~~l~lL~~l~~~---~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~ 393 (526)
T PF01602_consen 322 KKALDLLYKLANE---SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYV 393 (526)
T ss_dssp HHHHHHHHHH--H---HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGC
T ss_pred HHHHHHHhhcccc---cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccc
Confidence 9999999888652 22222 233444445 33355666666666665553322221111 11000
Q ss_pred --------------------chHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 009514 402 --------------------IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL 461 (533)
Q Consensus 402 --------------------~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L 461 (533)
.++..+.+.+.+-.+++++..++|++|..+...+. .. .. ..++..+++..
T Consensus 394 ~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~-~~-~~--------~~~~~~l~~~~ 463 (526)
T PF01602_consen 394 SNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN-TE-SA--------PDILRSLIENF 463 (526)
T ss_dssp HCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT-TT-HH--------HHHHHHHHHHH
T ss_pred cchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc-cc-cH--------HHHHHHHHHhh
Confidence 03455666666656778899999999988753322 00 11 23456677777
Q ss_pred ccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc--CCCCcHHHHHHHHHHHHh
Q 009514 462 QSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN--DPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 462 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~--~~~~~v~~~a~~aL~~~~ 526 (533)
...+..+|.....++..+........ ... .+.+.+.++.. +.+++||.||.+.+.-+.
T Consensus 464 ~~~~~~vk~~ilt~~~Kl~~~~~~~~--~~~-----~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll~ 523 (526)
T PF01602_consen 464 IEESPEVKLQILTALAKLFKRNPENE--VQN-----EILQFLLSLATEDSSDPEVRDRAREYLRLLN 523 (526)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHSCSTT--HHH-----HHHHHHHCHHHHS-SSHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhCCchh--hHH-----HHHHHHHHHhccCCCCHHHHHHHHHHHHHHc
Confidence 77778899999999998885321111 111 23566777776 789999999988876553
No 21
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.71 E-value=1.4e-14 Score=146.23 Aligned_cols=400 Identities=15% Similarity=0.161 Sum_probs=277.9
Q ss_pred ccccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchh-HHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChh-
Q 009514 14 LQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLE-QKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPE- 90 (533)
Q Consensus 14 ~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~-~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~- 90 (533)
+....+|.-+.+|.+.++.+|-.|+..+.++|..+.. |..+.+.|+|+.|+.+|.+ ...|+..|+.+|.++.+....
T Consensus 230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~ 309 (717)
T KOG1048|consen 230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTD 309 (717)
T ss_pred ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCc
Confidence 4456778999999999999999999999999975544 7889999999999999997 789999999999999877655
Q ss_pred -hhhhhccccCcccHHHHHHHHhc-CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--------CC---
Q 009514 91 -VVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--------DP--- 157 (533)
Q Consensus 91 -~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--------~~--- 157 (533)
..-++. ..++++.++++++. .|.+++......|+||+... ..++.+ ....++.|....- ++
T Consensus 310 ~NKlai~---~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D--~lK~~i-i~~al~tLt~~vI~P~Sgw~~~~~~~ 383 (717)
T KOG1048|consen 310 SNKLAIK---ELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND--ALKMLI-ITSALSTLTDNVIIPHSGWEEEPAPR 383 (717)
T ss_pred ccchhhh---hcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh--HHHHHH-HHHHHHHHHHhhcccccccCCCCccc
Confidence 433443 35789999999986 78999999999999999873 234433 4446666655431 11
Q ss_pred ----CchhhhHHHHHHhhhcCCHHHHHHHHHcC-cHHHHHHhhh----cCCCCchhHHHHHHHHHHhhccchhhhHhhhh
Q 009514 158 ----GRVGDEASFAFSSLIAEKEDMQKLAFEVN-GVDKLYNHLQ----KGSLHPRRFEGILLALADMCSKLECCRSRCLS 228 (533)
Q Consensus 158 ----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~~L~----~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 228 (533)
.++-..+.++|.|+.+...+.++.+.++. .|..|+.+++ ....+....+++++.+.+++-. ...+ +.
T Consensus 384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYr---l~~E-vp 459 (717)
T KOG1048|consen 384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYR---LEAE-VP 459 (717)
T ss_pred ccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCch---hhhh-cC
Confidence 23557899999999998888888888764 5688877665 2333456789999999998632 1111 10
Q ss_pred hchHHHHHH---hcCCCCHHHHHHHHHHHHHHhhccccc-------cch-------hhhhcCcHHHHHHhhc-CCCHHHH
Q 009514 229 LQVLKLVVD---ALAHDSSDVRSAACMCLRSVSRSIKNL-------SAG-------SFMNETIVIPLVRLLD-DTSTAVQ 290 (533)
Q Consensus 229 ~~~l~~l~~---~L~~~~~~v~~~a~~~L~~ls~~~~~~-------~~~-------~~~~~~~i~~Lv~lL~-~~~~~v~ 290 (533)
....+.+-. ....+.+. ...+|+....+..... ... .+....++.+=..+|. +.+..+.
T Consensus 460 ~~~~~~~~~~~~~~~~~~~~---~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~Tl 536 (717)
T KOG1048|consen 460 PKYRQVLANIARLPGVGPPA---ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTL 536 (717)
T ss_pred HhhhhHhhcccccccCCCcc---cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHH
Confidence 000000000 00001111 2233333333220100 000 0122334444333443 6688999
Q ss_pred HHHHHHHHHHhcCCchhH----HHH-HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHh
Q 009514 291 VAALGAISNIVVDFTTRR----STF-IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS 365 (533)
Q Consensus 291 ~~a~~aL~nl~~~~~~~~----~~~-~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ 365 (533)
++++++|-|++....... ..+ .+..+++.+++++..+++.+...+..+|.||+.+ +.+|+.+ ...+++-|++
T Consensus 537 EasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~rnk~li-gk~a~~~lv~ 613 (717)
T KOG1048|consen 537 EASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IRNKELI-GKYAIPDLVR 613 (717)
T ss_pred HHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--chhhhhh-hcchHHHHHH
Confidence 999999999997654322 233 5678999999999999999999999999999864 3345444 4778999999
Q ss_pred hhCCC------ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhc
Q 009514 366 LICDP------EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA 431 (533)
Q Consensus 366 lL~~~------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~ 431 (533)
.|.+. ++++...++.+|.|+...+......+++.+| ++.|..+..+..++++.+.|...|..|=
T Consensus 614 ~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g--~~kL~~I~~s~~S~k~~kaAs~vL~~lW 683 (717)
T KOG1048|consen 614 CLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKG--IPKLRLISKSQHSPKEFKAASSVLDVLW 683 (717)
T ss_pred hCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccC--hHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 98543 4688899999999999887777788888875 4666655555456677777777776654
No 22
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.70 E-value=1.9e-14 Score=141.54 Aligned_cols=487 Identities=15% Similarity=0.076 Sum_probs=315.3
Q ss_pred HHhhhcCCCcchhHHHHHHHHH-hhcCchhHHHHHhcCchHHHHHhhcC---ChHHHHHHHHHHHHHhcCChhhhhhhcc
Q 009514 22 LLSLLNNESENVSGLGASIISH-SCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNNPEVVSQFVG 97 (533)
Q Consensus 22 L~~lL~~~~~~v~~~a~~~l~~-~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~v~~~al~aL~~l~~~~~~~~~~~~~ 97 (533)
+-.++. .++...-.|..-..+ ...++..+..+.+.|.++.+..++.. ++..+......++.......+....+.+
T Consensus 15 l~~L~~-~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~ 93 (678)
T KOG1293|consen 15 LYRLLH-LDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR 93 (678)
T ss_pred HHhhhc-CCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence 334444 334333334444444 44456667789999999999999974 4566655555666655444444344433
Q ss_pred ccCcccHHHHHHHHhcCC-hhhHHHHHHHHHHhhhcCCC-cchhhhhHhhhHHHHHHhcC-CCCchhhhHHHHHHhhhcC
Q 009514 98 PDTGRTLSCIIEIVKDRF-ARTRLLASLCLIVIRNASPC-YLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAE 174 (533)
Q Consensus 98 ~~~~~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~i~~L~~ll~-~~~~~~~~a~~~L~~l~~~ 174 (533)
...++.+++++.+.+ .+++....+|+.++....+. ...+......+++.+..+++ +.......-+ .+...++.
T Consensus 94 ---~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~-~~~a~~s~ 169 (678)
T KOG1293|consen 94 ---IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDV-SRAAHLSS 169 (678)
T ss_pred ---HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhh-hhhccccc
Confidence 467889999999888 68999999999999887742 12333445567777777776 3222211111 12223344
Q ss_pred CHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHH---HhhccchhhhHh----hhhhchHH--HHHHhcCCCCHH
Q 009514 175 KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALA---DMCSKLECCRSR----CLSLQVLK--LVVDALAHDSSD 245 (533)
Q Consensus 175 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~---~l~~~~~~~~~~----~~~~~~l~--~l~~~L~~~~~~ 245 (533)
.++.+.+..++|..+++.-++... +...|.+|+..++ .+..+++..... ....|+.+ .+.+++++++..
T Consensus 170 ~~~hq~Il~Na~i~ekI~~l~~~~--s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s 247 (678)
T KOG1293|consen 170 TKDHQLILCNAGILEKINILLMYL--SSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFS 247 (678)
T ss_pred cchhhheeccccchhhHHHHHHhh--hHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCcc
Confidence 456666677777777766655443 3668999999998 666666544332 33445665 566778888888
Q ss_pred HHHHHHHHHHHHhhcccc---c-cchhhhhcC--cH--HHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcH
Q 009514 246 VRSAACMCLRSVSRSIKN---L-SAGSFMNET--IV--IPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGV 317 (533)
Q Consensus 246 v~~~a~~~L~~ls~~~~~---~-~~~~~~~~~--~i--~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i 317 (533)
.+..++.|+..+-+...+ . .+..+.+.| .+ -..+.++.+|.......++...+.++..-+.......+...+
T Consensus 248 ~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~ 327 (678)
T KOG1293|consen 248 ERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATL 327 (678)
T ss_pred HHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhh
Confidence 889999999888654211 1 111123332 11 112333445554444555555555554334445556666777
Q ss_pred HHHHHhhcC------CCHHHHH---HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514 318 KLLVQLSKS------MDSTIRL---NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 318 ~~L~~ll~~------~~~~~~~---~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~ 388 (533)
+.+++++.. ..+..|. +-...+..++++.+...++.+.+......+..+....|.+....++..+.+++..
T Consensus 328 ~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srs 407 (678)
T KOG1293|consen 328 KTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRS 407 (678)
T ss_pred hhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHH
Confidence 777776542 3343333 2233445555655556778888887777777777788889999998888877643
Q ss_pred CcchHHHHHhhc--CchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh
Q 009514 389 RINSVEYIFAED--GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS 466 (533)
Q Consensus 389 ~~~~~~~i~~~~--~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~ 466 (533)
+..+-..- ..+++.+++++.. |+..|+..++++|.|+.-...+.+..++. .|++..+..++.++++
T Consensus 408 ----V~aL~tg~~~~dv~~plvqll~d-p~~~i~~~~lgai~NlVmefs~~kskfl~-------~ngId~l~s~~~~~~~ 475 (678)
T KOG1293|consen 408 ----VSALRTGLKRNDVAQPLVQLLMD-PEIMIMGITLGAICNLVMEFSNLKSKFLR-------NNGIDILESMLTDPDF 475 (678)
T ss_pred ----HHHHHcCCccchhHHHHHHHhhC-cchhHHHHHHHHHHHHHhhcccHHHHHHH-------cCcHHHHHHHhcCCCc
Confidence 22221110 1267888888866 88999999999999999876667888887 7999999999999999
Q ss_pred hHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514 467 RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 467 ~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
.+|..+.|+|.++.++.+ .......+.+-+ ...+..+.+|+++.|++++...|.|+.+...
T Consensus 476 n~r~~~~~~Lr~l~f~~d--e~~k~~~~~ki~-a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 476 NSRANSLWVLRHLMFNCD--EEEKFQLLAKIP-ANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred hHHHHHHHHHHHHHhcch--HHHHHHHHHHhh-HHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 999999999999998432 222223333333 3556777899999999999999999987643
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.69 E-value=1.8e-13 Score=140.07 Aligned_cols=395 Identities=15% Similarity=0.131 Sum_probs=283.8
Q ss_pred hHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhcc
Q 009514 19 MEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVG 97 (533)
Q Consensus 19 i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~ 97 (533)
-+.++..|++.+.+.-+.++.+|.++-....-... ..+..+.|...|.. ++.||.-++..++++..++......+.
T Consensus 40 ~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~- 116 (503)
T PF10508_consen 40 EPVLFDCLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV- 116 (503)
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc-
Confidence 35588888888777788899999988754433332 45566777777776 789999999999999877766444332
Q ss_pred ccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCH
Q 009514 98 PDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKE 176 (533)
Q Consensus 98 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~ 176 (533)
+.+.++.++.++.+++..+...|..+|.+++.... ..+.+...+.++.|.+++.. ++.+|..+..++.++++.++
T Consensus 117 --~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~--~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~ 192 (503)
T PF10508_consen 117 --DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE--GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSP 192 (503)
T ss_pred --CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch--hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCH
Confidence 36788899999999999999999999999998653 23446677779999999986 67789999999999999999
Q ss_pred HHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCC--CH---HHH-HHH
Q 009514 177 DMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD--SS---DVR-SAA 250 (533)
Q Consensus 177 ~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~--~~---~v~-~~a 250 (533)
+....+.+.|.++.+++.|.+. +.-++.+++..|..++. .+.....+.+.|+++.+.+++.+. ++ .+. -..
T Consensus 193 ~~~~~~~~sgll~~ll~eL~~d--DiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~ 269 (503)
T PF10508_consen 193 EAAEAVVNSGLLDLLLKELDSD--DILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGR 269 (503)
T ss_pred HHHHHHHhccHHHHHHHHhcCc--cHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhH
Confidence 9888888999999999988874 57789999999999998 566778888999999999999743 22 222 233
Q ss_pred HHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH-HHh-C----cHHHHHHhh
Q 009514 251 CMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF-IRL-G----GVKLLVQLS 324 (533)
Q Consensus 251 ~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~-~~~-~----~i~~L~~ll 324 (533)
.+..++++...+. ... -.-..++..|..++.+.|+..+..|..+++.++. ..+.+..+ ... + .+..+-...
T Consensus 270 ~~f~g~la~~~~~-~v~-~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~ 346 (503)
T PF10508_consen 270 MKFFGNLARVSPQ-EVL-ELYPAFLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAI 346 (503)
T ss_pred HHHHHHHHhcChH-HHH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 3666777664111 110 0113456667777888999999999999999995 44556555 332 2 344444556
Q ss_pred cCCCHHHHHHHHHHHHHhhccCCh-------HhHHHHHHh---hcHH-HHHhhhCCCChhHHHHHHHHHHHhhcCCcchH
Q 009514 325 KSMDSTIRLNALRALRNLIFLAED-------KCKEEIFME---LTAS-LLASLICDPEPSVQEQALALVRNLVDGRINSV 393 (533)
Q Consensus 325 ~~~~~~~~~~al~aL~~l~~~~~~-------~~~~~i~~~---~~~~-~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 393 (533)
.+...++|..++.++.++.....+ ...+..++. .... .+..+++.|=++++..+..+|..++.... .+
T Consensus 347 ~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~W-g~ 425 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPW-GQ 425 (503)
T ss_pred cCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHH-HH
Confidence 667788999999999999643322 112222222 2334 77788888889999999999999997754 34
Q ss_pred HHHHhhcCchHHHHHHHhccCCch---hHHHHHHHHHHH
Q 009514 394 EYIFAEDGIILDAVGRQLRIASKA---EIEIQGMYVLGN 429 (533)
Q Consensus 394 ~~i~~~~~~~~~~L~~~L~~~~~~---~v~~~a~~~L~~ 429 (533)
..+....| +++.+...-.. ++. +.|...+.+|.+
T Consensus 426 ~~i~~~~g-fie~lldr~~E-~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 426 REICSSPG-FIEYLLDRSTE-TTKEGKEAKYDIIKALAK 462 (503)
T ss_pred HHHHhCcc-HHhhhcCCCCC-CCHHHHHHHHHHHHHHHh
Confidence 45555555 66666432222 222 334455555554
No 24
>PRK09687 putative lyase; Provisional
Probab=99.69 E-value=8.6e-15 Score=137.55 Aligned_cols=255 Identities=16% Similarity=0.132 Sum_probs=199.6
Q ss_pred CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccccc
Q 009514 186 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 265 (533)
Q Consensus 186 ~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~ 265 (533)
-.++.|..+|.+. +..+|..++++|..+.. ...++.+..+++++++.+|..++++|+.+.....
T Consensus 23 ~~~~~L~~~L~d~--d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~--- 86 (280)
T PRK09687 23 LNDDELFRLLDDH--NSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR--- 86 (280)
T ss_pred ccHHHHHHHHhCC--CHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---
Confidence 3467888888765 47799999999987642 2347788889999999999999999999865311
Q ss_pred chhhhhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514 266 AGSFMNETIVIPLVRL-LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 344 (533)
Q Consensus 266 ~~~~~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~ 344 (533)
.....++.|..+ ++++++.|+..|+.+|+++....... ....++.+...+.++++.+|..++++|+.+..
T Consensus 87 ----~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~ 157 (280)
T PRK09687 87 ----CQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND 157 (280)
T ss_pred ----chHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC
Confidence 012456778776 67899999999999999986432211 12345667788888999999999999987732
Q ss_pred cCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHH
Q 009514 345 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGM 424 (533)
Q Consensus 345 ~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~ 424 (533)
+ ..++.|+++|+++++.|+..|+.+|+.+...++. +.+.|...|.+ .++.|+..|+
T Consensus 158 ---~---------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~-----------~~~~L~~~L~D-~~~~VR~~A~ 213 (280)
T PRK09687 158 ---E---------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPD-----------IREAFVAMLQD-KNEEIRIEAI 213 (280)
T ss_pred ---H---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHH-----------HHHHHHHHhcC-CChHHHHHHH
Confidence 1 2588999999999999999999999998544433 66778888877 8999999999
Q ss_pred HHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHH
Q 009514 425 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVK 504 (533)
Q Consensus 425 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~ 504 (533)
+.|+.+- + ...+|.|++.|++++ ++..++.+|+++.. ..++|.|.
T Consensus 214 ~aLg~~~--~----------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~---------------~~a~p~L~ 258 (280)
T PRK09687 214 IGLALRK--D----------------KRVLSVLIKELKKGT--VGDLIIEAAGELGD---------------KTLLPVLD 258 (280)
T ss_pred HHHHccC--C----------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC---------------HhHHHHHH
Confidence 9998853 2 234588999999876 67889999999984 13689999
Q ss_pred hhhc-CCCCcHHHHHHHHHHH
Q 009514 505 NMVN-DPCLDVKLRVKTALEQ 524 (533)
Q Consensus 505 ~ll~-~~~~~v~~~a~~aL~~ 524 (533)
++++ +++..++.+|.++|.+
T Consensus 259 ~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 259 TLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHhhCCChhHHHHHHHHHhc
Confidence 9996 7899999999999875
No 25
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.1e-15 Score=146.05 Aligned_cols=275 Identities=22% Similarity=0.312 Sum_probs=220.7
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHh
Q 009514 244 SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL 323 (533)
Q Consensus 244 ~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~l 323 (533)
.....+++.+|..++++...+|++ +.+..+.+.|+++|++|+..+...+..+++|+...+++.+..+++.|.|..++.+
T Consensus 403 ~l~~~a~~l~LkS~SrSV~~LRTg-L~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~ 481 (743)
T COG5369 403 DLDFVAIVLFLKSMSRSVTFLRTG-LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL 481 (743)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhh-ccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH
Confidence 344567888999999998888888 8899999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc---hHHHHHhhc
Q 009514 324 SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN---SVEYIFAED 400 (533)
Q Consensus 324 l~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~i~~~~ 400 (533)
+.+.+..+|.++.|.+.++.++...+.+-+.+...++..++.+..++...+|.+++..|+|+.++... ..+..+...
T Consensus 482 v~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~ 561 (743)
T COG5369 482 VMSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKAT 561 (743)
T ss_pred hhcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecC
Confidence 99999999999999999999988887888999999999999999999999999999999999986432 111112111
Q ss_pred C--chHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHh------------------
Q 009514 401 G--IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF------------------ 460 (533)
Q Consensus 401 ~--~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~------------------ 460 (533)
. .+...+.+.+.. .+|--....+++|.+++..+...++.++++ .+++..+...
T Consensus 562 p~~ylfk~l~~k~e~-~np~~i~~~~yilv~~aa~d~~l~~~V~~q------~~~L~~i~eil~e~a~r~~L~pg~~~~~ 634 (743)
T COG5369 562 PRRYLFKRLIDKYEE-NNPMEILEGCYILVRNAACDDTLDYIVQSQ------EDMLDSIFEILDEFAGRTPLSPGSKEEH 634 (743)
T ss_pred hHHHHHHHHHHHHHh-cCchhhhhhHHHHHHHHhccchHHHHHHhH------HHHHHHHHHHHHHHcccCCCCCCCCccc
Confidence 1 145566666776 666666667999999998776555555543 2222222111
Q ss_pred -----------------------h--------c----cCChhHHHHHHHHHHhhcCCCCC-----CcHHHHHHHHHCCcH
Q 009514 461 -----------------------L--------Q----SNDSRLRTAAVWAVLNLTCSSSP-----GSSGRLVKLHDAGIV 500 (533)
Q Consensus 461 -----------------------L--------~----~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~~~~l~~~g~~ 500 (533)
+ + +++.+.-.+..|.+.|+.|++++ .+.+|++.+++.|+-
T Consensus 635 v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~ 714 (743)
T COG5369 635 VLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIR 714 (743)
T ss_pred ccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHH
Confidence 0 0 12345777889999999997543 245899999999999
Q ss_pred HHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514 501 SHVKNMVNDPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 501 ~~L~~ll~~~~~~v~~~a~~aL~~~~ 526 (533)
+.|+.+..+.+++|++++.+||.++.
T Consensus 715 e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 715 EWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred HHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 99999999999999999999999874
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.67 E-value=2.5e-12 Score=131.75 Aligned_cols=395 Identities=14% Similarity=0.161 Sum_probs=279.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHH
Q 009514 106 CIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFE 184 (533)
Q Consensus 106 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 184 (533)
.++..+++.+.+.-..++.+|..+...... . ....+..+.|...|.. ++.++..++..+.+++.+++.....+.+
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~--~--~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSALSP--D--SLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhccCH--H--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 377777777676666777788887775421 1 2356788889888884 5789999999999999888887777888
Q ss_pred cCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccc
Q 009514 185 VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL 264 (533)
Q Consensus 185 ~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~ 264 (533)
.+.++.++.++.++ +..+...|..+|..++.+.+. ...+...+.++.|..++...+..+|..+..++.+++...+..
T Consensus 118 ~~l~~~i~~~L~~~--d~~Va~~A~~~L~~l~~~~~~-~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 118 NELLPLIIQCLRDP--DLSVAKAAIKALKKLASHPEG-LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred ccHHHHHHHHHcCC--cHHHHHHHHHHHHHHhCCchh-HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 89999999988776 477899999999999986544 356778888999999999889999999999999998764554
Q ss_pred cchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC--H---HHH-HHHHHH
Q 009514 265 SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD--S---TIR-LNALRA 338 (533)
Q Consensus 265 ~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~---~~~-~~al~a 338 (533)
... +.+.|+++.++..++++|.=++..++..|..++. .+...+.+.+.|+++.|..++.+.. + .+. -..+..
T Consensus 195 ~~~-~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f 272 (503)
T PF10508_consen 195 AEA-VVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF 272 (503)
T ss_pred HHH-HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence 444 6778999999999999999999999999999997 6677889999999999999987532 2 122 223356
Q ss_pred HHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHH-HhhcCc---hHHHHHHHhccC
Q 009514 339 LRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI-FAEDGI---ILDAVGRQLRIA 414 (533)
Q Consensus 339 L~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~~~~---~~~~L~~~L~~~ 414 (533)
.++++...++.... .. ...+..+.+++.+.|+..+..|+.+++.++... +....+ ...++. ++..+.....+
T Consensus 273 ~g~la~~~~~~v~~-~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~-~G~~~L~~~~~~~~~~~l~~~~~~~~~- 348 (503)
T PF10508_consen 273 FGNLARVSPQEVLE-LY-PAFLERLFSMLESQDPTIREVAFDTLGQIGSTV-EGKQLLLQKQGPAMKHVLKAIGDAIKS- 348 (503)
T ss_pred HHHHHhcChHHHHH-HH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCH-HHHHHHHhhcchHHHHHHHHHHHHhcC-
Confidence 67776643221111 11 123456667788999999999999999998654 333444 333321 33333333333
Q ss_pred CchhHHHHHHHHHHHhccCChh-hHH---HHHHHhhHhhhhhhHH-HHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHH
Q 009514 415 SKAEIEIQGMYVLGNVATGKES-HKE---AVMDQLLLRAENKAQS-CIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSG 489 (533)
Q Consensus 415 ~~~~v~~~a~~~L~~l~~~~~~-~~~---~~~~~~~~~~~~~~~~-~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 489 (533)
...+++..++.+++++....+. ..+ .+.+..+.....+-.. .+..+++.|-+++|.++...|..++. ....
T Consensus 349 ~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~----~~Wg 424 (503)
T PF10508_consen 349 GSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA----QPWG 424 (503)
T ss_pred CchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc----CHHH
Confidence 6778999999999999543221 111 1222111111122223 77888888999999999999999995 2222
Q ss_pred HHHHHHHCCcHHHHHhhhcCCCCcHHHH
Q 009514 490 RLVKLHDAGIVSHVKNMVNDPCLDVKLR 517 (533)
Q Consensus 490 ~~~~l~~~g~~~~L~~ll~~~~~~v~~~ 517 (533)
........|+++.|++--.+++++.++.
T Consensus 425 ~~~i~~~~gfie~lldr~~E~~K~~ke~ 452 (503)
T PF10508_consen 425 QREICSSPGFIEYLLDRSTETTKEGKEA 452 (503)
T ss_pred HHHHHhCccHHhhhcCCCCCCCHHHHHH
Confidence 3334455566666666555556655543
No 27
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.66 E-value=1.3e-14 Score=152.53 Aligned_cols=359 Identities=15% Similarity=0.119 Sum_probs=259.2
Q ss_pred HHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--C--CCchhhhHHHHHHhhhcCCHHHHHHHHH
Q 009514 109 EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--D--PGRVGDEASFAFSSLIAEKEDMQKLAFE 184 (533)
Q Consensus 109 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 184 (533)
.++.......+..-.+-+..++..... .-.+...|++|.|++++- + +.+.+..|-.+|.|++...++..+.-.+
T Consensus 201 sllsml~t~D~ee~ar~fLemSss~es--CaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE 278 (2195)
T KOG2122|consen 201 SLLSMLGTDDEEEMARTFLEMSSSPES--CAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRRE 278 (2195)
T ss_pred HHhhhcccCCHHHHHHHHHHhccCchh--hHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHH
Confidence 333333333333334444444443321 234677899999999996 2 3567889999999999887775443333
Q ss_pred cCcHHHHHH----------hhhcCC------CCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC-------
Q 009514 185 VNGVDKLYN----------HLQKGS------LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH------- 241 (533)
Q Consensus 185 ~~~l~~L~~----------~L~~~~------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~------- 241 (533)
...++.|-+ ++.... .+......|+++|-.++ ++++.|..+.+.|+++.+-+++..
T Consensus 279 ~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp 357 (2195)
T KOG2122|consen 279 KKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEMHGP 357 (2195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 333333221 222211 11223346777777776 568999999999999999988752
Q ss_pred -----CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-chhHHHHHHhC
Q 009514 242 -----DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF-TTRRSTFIRLG 315 (533)
Q Consensus 242 -----~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~~~~~ 315 (533)
....+|..+..+|.||++...+.+..-....|+|+.+|..|.+...++....+..|+||+=.- ...++.+.+.|
T Consensus 358 ~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~G 437 (2195)
T KOG2122|consen 358 ETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETG 437 (2195)
T ss_pred CCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhh
Confidence 134789999999999998755443331356799999999999888899999999999997533 33456677789
Q ss_pred cHHHHHH-hhcCCCHHHHHHHHHHHHHhhccCChHhHHHH-HHhhcHHHHHhhhC----CCChhHHHHHHHHHHHhhcC-
Q 009514 316 GVKLLVQ-LSKSMDSTIRLNALRALRNLIFLAEDKCKEEI-FMELTASLLASLIC----DPEPSVQEQALALVRNLVDG- 388 (533)
Q Consensus 316 ~i~~L~~-ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i-~~~~~~~~l~~lL~----~~~~~v~~~a~~~L~~l~~~- 388 (533)
-+..|.. .++...+......+.||.||..+.. ++|..+ --.|.+.+|+.+|. +....+.+.+-++|+|.+..
T Consensus 438 sVtaLa~~al~~~kEsTLKavLSALWNLSAHct-eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~I 516 (2195)
T KOG2122|consen 438 SVTALAACALRNKKESTLKAVLSALWNLSAHCT-ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLI 516 (2195)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHhhhhhccc-ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHh
Confidence 9998885 4566666778888999999987664 355444 44678999999995 34578899999999998743
Q ss_pred --CcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh
Q 009514 389 --RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS 466 (533)
Q Consensus 389 --~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~ 466 (533)
+....+.+..+. ++..|.++|.+ .+-.|..++|.+|-||...++...+.+.+ .|+++.|.+++++.+.
T Consensus 517 At~E~yRQILR~~N--CLq~LLQ~LKS-~SLTiVSNaCGTLWNLSAR~p~DQq~LwD-------~gAv~mLrnLIhSKhk 586 (2195)
T KOG2122|consen 517 ATCEDYRQILRRHN--CLQTLLQHLKS-HSLTIVSNACGTLWNLSARSPEDQQMLWD-------DGAVPMLRNLIHSKHK 586 (2195)
T ss_pred hccchHHHHHHHhh--HHHHHHHHhhh-cceEEeecchhhhhhhhcCCHHHHHHHHh-------cccHHHHHHHHhhhhh
Confidence 333444445555 88899898988 67788999999999999988866666654 8999999999999999
Q ss_pred hHHHHHHHHHHhhcC
Q 009514 467 RLRTAAVWAVLNLTC 481 (533)
Q Consensus 467 ~v~~~a~~~L~~l~~ 481 (533)
.+-..++.+|.|+..
T Consensus 587 MIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 587 MIAMGSAAALRNLLN 601 (2195)
T ss_pred hhhhhHHHHHHHHhc
Confidence 999999999999885
No 28
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.65 E-value=6.5e-14 Score=147.38 Aligned_cols=379 Identities=15% Similarity=0.132 Sum_probs=275.4
Q ss_pred HHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCC----hHHHHHHHHHHHHHhcCChhhhhhh
Q 009514 20 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGS----LIQRDASLESIATIFKNNPEVVSQF 95 (533)
Q Consensus 20 ~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~----~~v~~~al~aL~~l~~~~~~~~~~~ 95 (533)
..|+.+|+..| ++--+..+..++..++.=..++..|+++.|+++|.+. ...|..|-.+|-+|.+..|+..+
T Consensus 200 ~sllsml~t~D---~ee~ar~fLemSss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr-- 274 (2195)
T KOG2122|consen 200 NSLLSMLGTDD---EEEMARTFLEMSSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKR-- 274 (2195)
T ss_pred hHHhhhcccCC---HHHHHHHHHHhccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhh--
Confidence 45666666544 4455566777777888888899999999999999862 36778888899999988887643
Q ss_pred ccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhh-hHHHHHHhhhcC
Q 009514 96 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGD-EASFAFSSLIAE 174 (533)
Q Consensus 96 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~-~a~~~L~~l~~~ 174 (533)
+.-...++.++.. ++.+.. .++....... . .....+.+-+. .|..+|.+++.+
T Consensus 275 -----~RRE~kvL~lLeQ----IraYC~-~~~~~lqar~-----------~-----~~apa~~~H~lcaA~~~lMK~SFD 328 (2195)
T KOG2122|consen 275 -----GRREKKVLHLLEQ----IRAYCE-TCWTWLQARG-----------P-----AIAPASDEHQLCAALCTLMKLSFD 328 (2195)
T ss_pred -----hHHHHHHHHHHHH----HHHHHH-HHHHHHHhcC-----------C-----CCCCcccchhhHHHHHHHHHhhcc
Confidence 1112223332221 111111 1111111100 0 00011112222 555667777655
Q ss_pred CHHHHHHHHHcCcHHHHHHhhhcCC------C----CchhHHHHHHHHHHhhccchhhhHhhh-hhchHHHHHHhcCCCC
Q 009514 175 KEDMQKLAFEVNGVDKLYNHLQKGS------L----HPRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAHDS 243 (533)
Q Consensus 175 ~~~~~~~~~~~~~l~~L~~~L~~~~------~----~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~l~~~L~~~~ 243 (533)
++.++.+.+.|+++.+-+++.-.. . .-.+|.++.++|.||...+..++..+. ..|++..+|..|.+..
T Consensus 329 -EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~p 407 (2195)
T KOG2122|consen 329 -EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAP 407 (2195)
T ss_pred -HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcCh
Confidence 456788889999988888665321 0 123789999999999998877776666 4589999999999999
Q ss_pred HHHHHHHHHHHHHHhhccc-cccchhhhhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCchhHHHHHH-hCcHHHH
Q 009514 244 SDVRSAACMCLRSVSRSIK-NLSAGSFMNETIVIPLVRL-LDDTSTAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLL 320 (533)
Q Consensus 244 ~~v~~~a~~~L~~ls~~~~-~~~~~~~~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~~~i~~L 320 (533)
.++..-.+.+|+||+|..+ +.+.. +.+.|-+..|+.. |+........+.+.||+||+.++.+++..|.. .|++..|
T Consensus 408 eeL~QV~AsvLRNLSWRAD~nmKkv-LrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFL 486 (2195)
T KOG2122|consen 408 EELLQVYASVLRNLSWRADSNMKKV-LRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFL 486 (2195)
T ss_pred HHHHHHHHHHHHhccccccccHHHH-HHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHH
Confidence 8999999999999998744 34444 6778889988885 45566678899999999999999888877775 5888999
Q ss_pred HHhhcCCC----HHHHHHHHHHHHHhhcc--CChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHH
Q 009514 321 VQLSKSMD----STIRLNALRALRNLIFL--AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE 394 (533)
Q Consensus 321 ~~ll~~~~----~~~~~~al~aL~~l~~~--~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 394 (533)
+.+|.... -.+.+.+-..|.|.... .....|+.+.+...+..|++.|++.+..+..++|++|.||+..+++..+
T Consensus 487 Vg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq 566 (2195)
T KOG2122|consen 487 VGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQ 566 (2195)
T ss_pred HhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHH
Confidence 99987642 45677777777776432 2335788888999999999999999999999999999999999999999
Q ss_pred HHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCC
Q 009514 395 YIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK 434 (533)
Q Consensus 395 ~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~ 434 (533)
.++..+ .+..|..++.+ .+..+-..++.+|-|+....
T Consensus 567 ~LwD~g--Av~mLrnLIhS-KhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 567 MLWDDG--AVPMLRNLIHS-KHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred HHHhcc--cHHHHHHHHhh-hhhhhhhhHHHHHHHHhcCC
Confidence 999988 78888777776 77888888889999988654
No 29
>PRK09687 putative lyase; Provisional
Probab=99.60 E-value=1.5e-13 Score=129.18 Aligned_cols=225 Identities=10% Similarity=0.050 Sum_probs=175.0
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 009514 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST 310 (533)
Q Consensus 231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 310 (533)
-++.|.+.|.+.+..+|..++++|..+. .....+.+..++.++++.+|..|+++|+.+-.....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~------------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG------------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC------------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence 4778899999999999999999997653 235667888899999999999999999998642211
Q ss_pred HHHhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514 311 FIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 389 (533)
Q Consensus 311 ~~~~~~i~~L~~l-l~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~ 389 (533)
....++.|..+ ++++++.||..++.+|+++...... . ....++.+...+.++++.|+..++++|.++...
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~-~-----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~- 158 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPL-Y-----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE- 158 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc-c-----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-
Confidence 12456777766 6788899999999999998643211 0 111345566778899999999999999876432
Q ss_pred cchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHH
Q 009514 390 INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR 469 (533)
Q Consensus 390 ~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~ 469 (533)
. .++.|...|.+ +++.|+..|+++|+++..+++ .+++.|+..|.+.+..||
T Consensus 159 -~-----------ai~~L~~~L~d-~~~~VR~~A~~aLg~~~~~~~----------------~~~~~L~~~L~D~~~~VR 209 (280)
T PRK09687 159 -A-----------AIPLLINLLKD-PNGDVRNWAAFALNSNKYDNP----------------DIREAFVAMLQDKNEEIR 209 (280)
T ss_pred -H-----------HHHHHHHHhcC-CCHHHHHHHHHHHhcCCCCCH----------------HHHHHHHHHhcCCChHHH
Confidence 1 67888888887 888999999999999843332 234678899999999999
Q ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514 470 TAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 470 ~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~ 526 (533)
..|+++|+.+-. ..++|.|++.+++++ ++.+|..||+.|-
T Consensus 210 ~~A~~aLg~~~~---------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 210 IEAIIGLALRKD---------------KRVLSVLIKELKKGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHHHHccCC---------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcC
Confidence 999999998763 136899999998644 7788888888774
No 30
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.60 E-value=3.4e-13 Score=147.93 Aligned_cols=277 Identities=20% Similarity=0.195 Sum_probs=204.0
Q ss_pred HhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchh
Q 009514 143 KTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC 221 (533)
Q Consensus 143 ~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~ 221 (533)
....++.|++.|.+ ++.+|..|+..|..+.. .+.++.|+..|.++ ++.+|..|+.+|..+....+
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~--d~~VR~~Aa~aL~~l~~~~~- 684 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDG--AAAVRRAAAEGLRELVEVLP- 684 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhccC-
Confidence 34566777787874 46788888887776531 23467788877554 47788888888877642111
Q ss_pred hhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 009514 222 CRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIV 301 (533)
Q Consensus 222 ~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~ 301 (533)
-.+.+...|+++++.||..++.+|..+.. +-...|++.|+++++.++..|+.+|+.+-
T Consensus 685 ---------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-------------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~ 742 (897)
T PRK13800 685 ---------PAPALRDHLGSPDPVVRAAALDVLRALRA-------------GDAALFAAALGDPDHRVRIEAVRALVSVD 742 (897)
T ss_pred ---------chHHHHHHhcCCCHHHHHHHHHHHHhhcc-------------CCHHHHHHHhcCCCHHHHHHHHHHHhccc
Confidence 13456677888888999988888876532 11235777888999999999999987642
Q ss_pred cCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHH
Q 009514 302 VDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALAL 381 (533)
Q Consensus 302 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~ 381 (533)
..+.|..++.++++.+|..+..+|..+..... ...+.|.++++++++.|+..++.+
T Consensus 743 --------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~----------~~~~~L~~ll~D~d~~VR~aA~~a 798 (897)
T PRK13800 743 --------------DVESVAGAATDENREVRIAVAKGLATLGAGGA----------PAGDAVRALTGDPDPLVRAAALAA 798 (897)
T ss_pred --------------CcHHHHHHhcCCCHHHHHHHHHHHHHhccccc----------hhHHHHHHHhcCCCHHHHHHHHHH
Confidence 12346678888999999999999988843221 236778899999999999999999
Q ss_pred HHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 009514 382 VRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL 461 (533)
Q Consensus 382 L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L 461 (533)
|.++..... +...+...|.+ +++.|+..|+.+|+.+.. ...++.|+.+|
T Consensus 799 Lg~~g~~~~------------~~~~l~~aL~d-~d~~VR~~Aa~aL~~l~~------------------~~a~~~L~~~L 847 (897)
T PRK13800 799 LAELGCPPD------------DVAAATAALRA-SAWQVRQGAARALAGAAA------------------DVAVPALVEAL 847 (897)
T ss_pred HHhcCCcch------------hHHHHHHHhcC-CChHHHHHHHHHHHhccc------------------cchHHHHHHHh
Confidence 998864321 33455566766 789999999999987642 12347889999
Q ss_pred ccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHH
Q 009514 462 QSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQ 524 (533)
Q Consensus 462 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~ 524 (533)
++++..||..|+++|..+. +.+ ...+.|.+.++|.+++|+..|..||..
T Consensus 848 ~D~~~~VR~~A~~aL~~~~-----~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 848 TDPHLDVRKAAVLALTRWP-----GDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred cCCCHHHHHHHHHHHhccC-----CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999999999999973 111 136788899999999999999999864
No 31
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=3.3e-12 Score=127.65 Aligned_cols=470 Identities=15% Similarity=0.132 Sum_probs=277.8
Q ss_pred cchHHHHhhhcCCCcc-hhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC------ChHHHHHHHHHHHHHhcCCh
Q 009514 17 ENMEFLLSLLNNESEN-VSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG------SLIQRDASLESIATIFKNNP 89 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~-v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~------~~~v~~~al~aL~~l~~~~~ 89 (533)
+.++.|++...++.+. +++.++.+|+.+|.+-+-+ ......-..|..+..+ +..||-.|+.||.+=-+...
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe--vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~ 206 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE--VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK 206 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH--HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence 4555666666655555 8899999999999654433 2222233445555442 45899999999977221111
Q ss_pred hhhhhhccccCcccH-HHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-CCCchhhhHHHH
Q 009514 90 EVVSQFVGPDTGRTL-SCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGDEASFA 167 (533)
Q Consensus 90 ~~~~~~~~~~~~~~i-~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~a~~~ 167 (533)
..|........| ..+.+..++++.++|.+|..||..+....-..... -.....++.-+.-+. +++.+...+.+.
T Consensus 207 ---~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~-yM~~alfaitl~amks~~deValQaiEF 282 (859)
T KOG1241|consen 207 ---ANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEP-YMEQALFAITLAAMKSDNDEVALQAIEF 282 (859)
T ss_pred ---HhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 011111112233 34556788999999999999999987654221111 111223333233333 344454444433
Q ss_pred HHhhhcCCHHHH---------------HHHH---HcCcHHHHHHhhhcCCC-----------------------------
Q 009514 168 FSSLIAEKEDMQ---------------KLAF---EVNGVDKLYNHLQKGSL----------------------------- 200 (533)
Q Consensus 168 L~~l~~~~~~~~---------------~~~~---~~~~l~~L~~~L~~~~~----------------------------- 200 (533)
=++++...-+.. ..+. -.+.+|.|+++|...++
T Consensus 283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv 362 (859)
T KOG1241|consen 283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIV 362 (859)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccch
Confidence 333322111100 0000 01345677776665321
Q ss_pred --------------CchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccc
Q 009514 201 --------------HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA 266 (533)
Q Consensus 201 --------------~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~ 266 (533)
+++.|+.++.+++.+-...+..+..-...+++|.++.++.+++--++..++|+++.++...+..+.
T Consensus 363 ~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~ 442 (859)
T KOG1241|consen 363 PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAII 442 (859)
T ss_pred hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcc
Confidence 234678889999888776665555555678999999999999999999999999999877554332
Q ss_pred hhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH---------HHHHHhCcHHHHHHhhcC---CCHHHHHH
Q 009514 267 GSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR---------STFIRLGGVKLLVQLSKS---MDSTIRLN 334 (533)
Q Consensus 267 ~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~---------~~~~~~~~i~~L~~ll~~---~~~~~~~~ 334 (533)
......+.++.+++-|. +.|.+...+||++.+|+....+.. ..+. ..++..|++.... ....+|..
T Consensus 443 n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y-~~ii~~Ll~~tdr~dgnqsNLR~A 520 (859)
T KOG1241|consen 443 NQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFY-EAIIGSLLKVTDRADGNQSNLRSA 520 (859)
T ss_pred cHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhH-HHHHHHHHhhccccccchhhHHHH
Confidence 21233444555555554 578999999999999984322110 1111 1345555555544 23679999
Q ss_pred HHHHHHHhhccCChHhHHHHHHhh--cHHHHHhh-----hCCCC----hhHHHHHHHHHHHhhcCCcchHHHHHhhcCch
Q 009514 335 ALRALRNLIFLAEDKCKEEIFMEL--TASLLASL-----ICDPE----PSVQEQALALVRNLVDGRINSVEYIFAEDGII 403 (533)
Q Consensus 335 al~aL~~l~~~~~~~~~~~i~~~~--~~~~l~~l-----L~~~~----~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~ 403 (533)
|..+|..+...++.++...+...- .+..|-+. +...+ .++|...+..|..+...-... +.+..+++
T Consensus 521 AYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~---~~~~~d~i 597 (859)
T KOG1241|consen 521 AYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKVGSD---IREVSDQI 597 (859)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHcccc---chhHHHHH
Confidence 999999999877655554443321 12222222 22222 355666666666665332221 22222237
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHhhcCC
Q 009514 404 LDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLTCS 482 (533)
Q Consensus 404 ~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~-~~~~~v~~~a~~~L~~l~~~ 482 (533)
+..+.+++.+-.+.-+.+.++.+++.++..-.......+ ..+.|.|..-|+ -.++.|+..|++.++.++.
T Consensus 598 M~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym--------~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~r- 668 (859)
T KOG1241|consen 598 MGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYM--------PAFKPYLLMGLSNFQEYQVCAAAVGLVGDLAR- 668 (859)
T ss_pred HHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHH--------HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH-
Confidence 888889888834456788888888888764333344444 356788888884 4678999999999999994
Q ss_pred CCCCcHHHHHHHHHCCcHHHHHhhhcCC
Q 009514 483 SSPGSSGRLVKLHDAGIVSHVKNMVNDP 510 (533)
Q Consensus 483 ~~~~~~~~~~~l~~~g~~~~L~~ll~~~ 510 (533)
.-.+.+..++ .++...|++-|.++
T Consensus 669 ---aL~~~i~py~-d~~mt~Lvq~Lss~ 692 (859)
T KOG1241|consen 669 ---ALEDDILPYC-DELMTVLVQCLSSP 692 (859)
T ss_pred ---HHHhhhhhHH-HHHHHHHHHHccCc
Confidence 1122233333 34567788877754
No 32
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.58 E-value=3.1e-12 Score=119.86 Aligned_cols=437 Identities=11% Similarity=0.026 Sum_probs=298.8
Q ss_pred ChHHHHHHHHHHHHHhcCChhhhhhhccc-cCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHH
Q 009514 70 SLIQRDASLESIATIFKNNPEVVSQFVGP-DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLIN 148 (533)
Q Consensus 70 ~~~v~~~al~aL~~l~~~~~~~~~~~~~~-~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~ 148 (533)
+..++.....|++..+.. +.-+..|.+. -..+.+..+.+..+|++..+.....++|.|++..+.+ .++.+...|+-+
T Consensus 55 ~~tv~~~qssC~A~~sk~-ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E-~R~a~~~lgGaq 132 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSKN-EVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNE-NRAAFFNLGGAQ 132 (604)
T ss_pred cchhhhhhHHHHHHHhhh-HHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCch-hHHHHHhcCCce
Confidence 345666666777777643 2222333221 1134556666667788888999999999999988754 677788889977
Q ss_pred HHHHhcC----CCC----chhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch
Q 009514 149 NLLELLD----DPG----RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE 220 (533)
Q Consensus 149 ~L~~ll~----~~~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~ 220 (533)
.+++.|+ .+. ....-+.+.|.|-.-++++.++.+.+.|.++.|...+.-...+...-+..+-.+.++.+.-.
T Consensus 133 ivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~ 212 (604)
T KOG4500|consen 133 IVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVC 212 (604)
T ss_pred ehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHH
Confidence 7777775 222 33456778999999999999999999999999988665433334445555555555554322
Q ss_pred h-hhHhhhhhchHHHHHHhcCC-CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC-C-------CHHHH
Q 009514 221 C-CRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-T-------STAVQ 290 (533)
Q Consensus 221 ~-~~~~~~~~~~l~~l~~~L~~-~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~-------~~~v~ 290 (533)
+ ......+....-.+++++.. .+++.+......+...+.+ +..+-. +.+.|.++.++.+++. + .-...
T Consensus 213 e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aen-d~Vkl~-la~~gl~e~~~~lv~~~k~~t~k~d~~~l~ 290 (604)
T KOG4500|consen 213 EMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAEN-DLVKLS-LAQNGLLEDSIDLVRNMKDFTKKTDMLNLF 290 (604)
T ss_pred HhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcC-cceeee-hhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence 2 23344456677777777764 3667777778888888877 444444 7888999999988864 1 12334
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHhC-cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC-
Q 009514 291 VAALGAISNIVVDFTTRRSTFIRLG-GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC- 368 (533)
Q Consensus 291 ~~a~~aL~nl~~~~~~~~~~~~~~~-~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~- 368 (533)
..++.-..-+..+.+. -+++...+ .+..+...+.+.+......+.-+++|+++..+ ....+++.+.+.-++.+|.
T Consensus 291 k~~~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~--~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 291 KRIAELDVLLLTGDES-MQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD--ICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred HhhhhHhhhhhcCchH-HHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHHHHHH
Confidence 4555555555554433 34555555 67888888999999999999999999998544 6677788888888888874
Q ss_pred ----CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHH
Q 009514 369 ----DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQ 444 (533)
Q Consensus 369 ----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 444 (533)
+++.++|..++.+|+|+.-.-+ ....+...| +.+.+...+.. ..|.++-.-...+..+-.+.+.....+..
T Consensus 368 ~~~vdgnV~~qhA~lsALRnl~IPv~-nka~~~~aG--vteaIL~~lk~-~~ppv~fkllgTlrM~~d~qe~~a~eL~k- 442 (604)
T KOG4500|consen 368 EKDVDGNVERQHACLSALRNLMIPVS-NKAHFAPAG--VTEAILLQLKL-ASPPVTFKLLGTLRMIRDSQEYIACELAK- 442 (604)
T ss_pred hcCCCccchhHHHHHHHHHhccccCC-chhhccccc--hHHHHHHHHHh-cCCcchHHHHHHHHHHHhchHHHHHHHhc-
Confidence 4678899999999999986543 234555555 67777777776 45555555566666655554433333333
Q ss_pred hhHhhhhhhHHHHHHhhccCChh-HHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHH
Q 009514 445 LLLRAENKAQSCIIKFLQSNDSR-LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 523 (533)
Q Consensus 445 ~~~~~~~~~~~~lv~~L~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~ 523 (533)
....+..|+.--+++|.. |--+....+..+.. .+-..+-+..+.++|+++.++.+.....-..+..|.-||-
T Consensus 443 -----n~~l~ekLv~Wsks~D~aGv~gESnRll~~lIk--Hs~~kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVal~ 515 (604)
T KOG4500|consen 443 -----NPELFEKLVDWSKSPDFAGVAGESNRLLLGLIK--HSKYKDVILTVPKSGGIKEKVSMFTKNHINMQNEALVALL 515 (604)
T ss_pred -----CHHHHHHHHHhhhCCccchhhhhhhHHHHHHHH--hhHhhhhHhhccccccHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 245667778887888864 77788888888875 2224455677888999999999988777777777777765
Q ss_pred HH
Q 009514 524 QF 525 (533)
Q Consensus 524 ~~ 525 (533)
.+
T Consensus 516 ~~ 517 (604)
T KOG4500|consen 516 ST 517 (604)
T ss_pred HH
Confidence 54
No 33
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.58 E-value=1.4e-12 Score=143.18 Aligned_cols=274 Identities=18% Similarity=0.135 Sum_probs=212.0
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHH
Q 009514 103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKL 181 (533)
Q Consensus 103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~ 181 (533)
.++.|+..++|+++.||..|+..|..+.. ...+|.|.+.|++ +..++..|+..|..+....+
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----- 684 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----- 684 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-----
Confidence 45677788999999999999999886432 3478899999985 46799999999887753221
Q ss_pred HHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc
Q 009514 182 AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSI 261 (533)
Q Consensus 182 ~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~ 261 (533)
..+.+...|.++ ++.+|..++.+|..+...+ ...+++.|+++++.||..|+.+|..+.
T Consensus 685 -----~~~~L~~~L~~~--d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~VR~~Av~aL~~~~--- 742 (897)
T PRK13800 685 -----PAPALRDHLGSP--DPVVRAAALDVLRALRAGD------------AALFAAALGDPDHRVRIEAVRALVSVD--- 742 (897)
T ss_pred -----chHHHHHHhcCC--CHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHHHHHHHHHHHhccc---
Confidence 124566667654 5789999999988764211 235678899999999999999987641
Q ss_pred ccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 009514 262 KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN 341 (533)
Q Consensus 262 ~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~ 341 (533)
..+.|..++.+++++||..++.+|+.+.... ...++.|..+++++++.+|..|+.+|++
T Consensus 743 ------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~ 801 (897)
T PRK13800 743 ------------DVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDPDPLVRAAALAALAE 801 (897)
T ss_pred ------------CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 1235778899999999999999999886422 1347888899999999999999999999
Q ss_pred hhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHH
Q 009514 342 LIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI 421 (533)
Q Consensus 342 l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~ 421 (533)
+.... .....+...|+++++.|+..|+++|..+.... .++.|...|.+ +++.|+.
T Consensus 802 ~g~~~-----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~-------------a~~~L~~~L~D-~~~~VR~ 856 (897)
T PRK13800 802 LGCPP-----------DDVAAATAALRASAWQVRQGAARALAGAAADV-------------AVPALVEALTD-PHLDVRK 856 (897)
T ss_pred cCCcc-----------hhHHHHHHHhcCCChHHHHHHHHHHHhccccc-------------hHHHHHHHhcC-CCHHHHH
Confidence 84311 12356778899999999999999999875432 56888888887 8999999
Q ss_pred HHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHh
Q 009514 422 QGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLN 478 (533)
Q Consensus 422 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~ 478 (533)
.++++|+.+. +++ ...+.|...+++++..||..|..+|..
T Consensus 857 ~A~~aL~~~~-~~~----------------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 857 AAVLALTRWP-GDP----------------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHHHHhccC-CCH----------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 9999999862 222 233677899999999999999998863
No 34
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.52 E-value=1.2e-12 Score=120.22 Aligned_cols=195 Identities=15% Similarity=0.193 Sum_probs=159.0
Q ss_pred cccccccchHHHHhhhc-CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCC
Q 009514 11 YDFLQEENMEFLLSLLN-NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNN 88 (533)
Q Consensus 11 ~~l~~~~~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~ 88 (533)
+..++++.++.|+.+|+ +.++.+++.|..++.+.+..+.+|..+.+.|+++.+..+|.. ++.+|+.|+.+|.+++.+.
T Consensus 6 ~~~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 6 KNILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVND 85 (254)
T ss_pred cCCcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCCh
Confidence 56789999999999999 468999999999999999999999999999999999999997 7899999999999998665
Q ss_pred hhhhhhhccccCcccHHHHHHHHhc--CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHH
Q 009514 89 PEVVSQFVGPDTGRTLSCIIEIVKD--RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEAS 165 (533)
Q Consensus 89 ~~~~~~~~~~~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~ 165 (533)
++. ..+ ...++.+++.+.+ .+..+|.++.+.|.+++.....+ . .+ .+.+|.++++|.. +..++..+.
T Consensus 86 en~-~~I-----k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~--~-~l-~~~i~~ll~LL~~G~~~~k~~vL 155 (254)
T PF04826_consen 86 ENQ-EQI-----KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH--H-ML-ANYIPDLLSLLSSGSEKTKVQVL 155 (254)
T ss_pred hhH-HHH-----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh--h-hH-HhhHHHHHHHHHcCChHHHHHHH
Confidence 443 333 2357777775554 37799999999999998765432 2 22 4589999999984 567899999
Q ss_pred HHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhc
Q 009514 166 FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCS 217 (533)
Q Consensus 166 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~ 217 (533)
++|.+|+++ +...+.++..++++.++.++..+ .+.+....++..+.++..
T Consensus 156 k~L~nLS~n-p~~~~~Ll~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni~~ 205 (254)
T PF04826_consen 156 KVLVNLSEN-PDMTRELLSAQVLSSFLSLFNSS-ESKENLLRVLTFFENINE 205 (254)
T ss_pred HHHHHhccC-HHHHHHHHhccchhHHHHHHccC-CccHHHHHHHHHHHHHHH
Confidence 999999864 55566777889999999988776 356677788888888853
No 35
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.51 E-value=2e-11 Score=128.01 Aligned_cols=401 Identities=16% Similarity=0.152 Sum_probs=265.4
Q ss_pred chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514 18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV 96 (533)
Q Consensus 18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~ 96 (533)
.++.+.+=|+++++.++..|.+++++++ .++- . .-..+.+.+++.+ ++-||.+|+.++.++...+|+....
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~-~~~~----~-~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~-- 151 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIR-TPEM----A-EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED-- 151 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH--SHHH----H-HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG--
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhc-ccch----h-hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH--
Confidence 5677777888899999999999999998 3332 2 2256778888876 7899999999999998887776421
Q ss_pred cccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCC
Q 009514 97 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEK 175 (533)
Q Consensus 97 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~ 175 (533)
. .++.+.++++++++.|+.+|+.++..+ +.++. ... ..-...++.|.+++.. +++.+......+..++...
T Consensus 152 ----~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~-~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~ 223 (526)
T PF01602_consen 152 ----E-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDD-SYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPME 223 (526)
T ss_dssp ----G-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHH-HHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSS
T ss_pred ----H-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcc-hhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCC
Confidence 2 478889999999999999999999988 32211 100 2233455566666564 4667888999999998777
Q ss_pred HHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHH
Q 009514 176 EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLR 255 (533)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~ 255 (533)
+..... ...++.+..++.+. .+.+...++.++..+....+ .-..+++.+.+++.++++.+|..++.+|.
T Consensus 224 ~~~~~~---~~~i~~l~~~l~s~--~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 224 PEDADK---NRIIEPLLNLLQSS--SPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLS 292 (526)
T ss_dssp HHHHHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred hhhhhH---HHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHH
Confidence 665411 24567777777754 36778888888888765432 33467899999999999999999999999
Q ss_pred HHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh-cCCCHHHHH
Q 009514 256 SVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS-KSMDSTIRL 333 (533)
Q Consensus 256 ~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~ 333 (533)
.++...+ . ... .....+..+. +++..++..++..|.+++. ..+.. .+++.|...+ ..++++++.
T Consensus 293 ~l~~~~~----~-~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~--~~n~~-----~Il~eL~~~l~~~~d~~~~~ 358 (526)
T PF01602_consen 293 QLAQSNP----P-AVF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN--ESNVK-----EILDELLKYLSELSDPDFRR 358 (526)
T ss_dssp HHCCHCH----H-HHG--THHHHHHHHHCSSSHHHHHHHHHHHHHH----HHHHH-----HHHHHHHHHHHHC--HHHHH
T ss_pred Hhhcccc----h-hhh--hhhhhhheecCCCChhHHHHHHHHHhhccc--ccchh-----hHHHHHHHHHHhccchhhhh
Confidence 9987631 1 122 2223334444 8899999999999999984 23222 2567777777 445777888
Q ss_pred HHHHHHHHhhccCChHhHH---HH---HH-------------------------hhcHHHHHhhhCC-CChhHHHHHHHH
Q 009514 334 NALRALRNLIFLAEDKCKE---EI---FM-------------------------ELTASLLASLICD-PEPSVQEQALAL 381 (533)
Q Consensus 334 ~al~aL~~l~~~~~~~~~~---~i---~~-------------------------~~~~~~l~~lL~~-~~~~v~~~a~~~ 381 (533)
.++.+++.++...++.... .+ +. ...+..+.+.+.+ .+++++..++|+
T Consensus 359 ~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wi 438 (526)
T PF01602_consen 359 ELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWI 438 (526)
T ss_dssp HHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 8888888776432211110 00 00 0124444554443 456677777777
Q ss_pred HHHhhcCCcc--hHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCCh--hhHHHHHHHhhHhhhhhhHHHH
Q 009514 382 VRNLVDGRIN--SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE--SHKEAVMDQLLLRAENKAQSCI 457 (533)
Q Consensus 382 L~~l~~~~~~--~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~l 457 (533)
++..+...++ .... +++.+...+.. .++.++...+.++..+....+ +..+. +.+.+
T Consensus 439 lGEy~~~~~~~~~~~~-------~~~~l~~~~~~-~~~~vk~~ilt~~~Kl~~~~~~~~~~~~------------i~~~~ 498 (526)
T PF01602_consen 439 LGEYGELIENTESAPD-------ILRSLIENFIE-ESPEVKLQILTALAKLFKRNPENEVQNE------------ILQFL 498 (526)
T ss_dssp HHHHCHHHTTTTHHHH-------HHHHHHHHHTT-SHHHHHHHHHHHHHHHHHHSCSTTHHHH------------HHHHH
T ss_pred hcccCCcccccccHHH-------HHHHHHHhhcc-ccHHHHHHHHHHHHHHHhhCCchhhHHH------------HHHHH
Confidence 7776644322 1111 44455554444 567899999998888876443 22222 33566
Q ss_pred HHhhc--cCChhHHHHHHHHHHhh
Q 009514 458 IKFLQ--SNDSRLRTAAVWAVLNL 479 (533)
Q Consensus 458 v~~L~--~~~~~v~~~a~~~L~~l 479 (533)
..+.. +.+.++|..|...+.=+
T Consensus 499 ~~~~~~~s~~~evr~Ra~~y~~ll 522 (526)
T PF01602_consen 499 LSLATEDSSDPEVRDRAREYLRLL 522 (526)
T ss_dssp HCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHH
Confidence 67777 78999999998776543
No 36
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.49 E-value=2.4e-12 Score=118.22 Aligned_cols=227 Identities=18% Similarity=0.176 Sum_probs=173.6
Q ss_pred HcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccc
Q 009514 184 EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN 263 (533)
Q Consensus 184 ~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~ 263 (533)
+.+.+++|+.+|+.. .+|.+++.++.++++.+.+ +..++.+.+.|+++.+..+|.++++.+|..|.++|.|++.+.++
T Consensus 10 ~~~~l~~Ll~lL~~t-~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 10 EAQELQKLLCLLEST-EDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred CHHHHHHHHHHHhcC-CChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 445678999988876 4788999999999998765 57888899999999999999999999999999999999887555
Q ss_pred ccchhhhhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 009514 264 LSAGSFMNETIVIPLVRLLDD--TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN 341 (533)
Q Consensus 264 ~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~ 341 (533)
... + ..+++.+++...+ .+.++|.++..+|.|++..+ .....+ .+.++.+++++.+++..+|.+++++|.|
T Consensus 88 ~~~---I-k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~~~l--~~~i~~ll~LL~~G~~~~k~~vLk~L~n 160 (254)
T PF04826_consen 88 QEQ---I-KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYHHML--ANYIPDLLSLLSSGSEKTKVQVLKVLVN 160 (254)
T ss_pred HHH---H-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chhhhH--HhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 432 2 2357777775432 37899999999999998643 333333 3579999999999999999999999999
Q ss_pred hhccCChHhHHHHHHhhcHHHHHhhhCCC-ChhHHHHHHHHHHHhhcCCcch-------------HHHHHhhcCchHHHH
Q 009514 342 LIFLAEDKCKEEIFMELTASLLASLICDP-EPSVQEQALALVRNLVDGRINS-------------VEYIFAEDGIILDAV 407 (533)
Q Consensus 342 l~~~~~~~~~~~i~~~~~~~~l~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~-------------~~~i~~~~~~~~~~L 407 (533)
|+. .|...+.++...+...++.++..+ +.++...++..+.|+..+-... ...++.+.+.+-+.|
T Consensus 161 LS~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l 238 (254)
T PF04826_consen 161 LSE--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKL 238 (254)
T ss_pred hcc--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHH
Confidence 976 466788888888999999999764 6788999999999997552211 112233322244445
Q ss_pred HHHhccCCchhHHHH
Q 009514 408 GRQLRIASKAEIEIQ 422 (533)
Q Consensus 408 ~~~L~~~~~~~v~~~ 422 (533)
..+..+ ++++|++.
T Consensus 239 ~~l~~h-~d~ev~~~ 252 (254)
T PF04826_consen 239 QALANH-PDPEVKEQ 252 (254)
T ss_pred HHHHcC-CCHHHhhh
Confidence 444444 77777764
No 37
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.2e-11 Score=122.99 Aligned_cols=394 Identities=12% Similarity=0.044 Sum_probs=267.0
Q ss_pred cHHHHHHHHhcC-ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhhhHHHHHHhhhcCCHHHH
Q 009514 103 TLSCIIEIVKDR-FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQ 179 (533)
Q Consensus 103 ~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~~ 179 (533)
.+..|+.-++.. ++..|..|+.-|+.+.....+.....+--...+|.|+.+|+. +.+++..|+++|++|....+..-
T Consensus 168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 455666666554 888899998888887665543334445556799999999993 56899999999999998888777
Q ss_pred HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 009514 180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR 259 (533)
Q Consensus 180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~ 259 (533)
..++++++||.|+.-|..- ..-++.|+++.+|-.++...+ +.+.+.|++-..+.+|+.-+..+|..|.....|++.
T Consensus 248 a~vV~~~aIPvl~~kL~~I-eyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTI-EYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred heeecccchHHHHHhhhhh-hhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999877654 246788999999999987544 467889999999999998899999999999999987
Q ss_pred ccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch---hHHHHHHhCcHHHHHHhhcCCC----HHHH
Q 009514 260 SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT---RRSTFIRLGGVKLLVQLSKSMD----STIR 332 (533)
Q Consensus 260 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~---~~~~~~~~~~i~~L~~ll~~~~----~~~~ 332 (533)
+...-... .-...+|.|..+|...|....+.++-++..++..+.. ..+.+...|.|....+++.-.. ..+.
T Consensus 324 si~sd~f~--~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~ 401 (1051)
T KOG0168|consen 324 SIRSDEFH--FVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY 401 (1051)
T ss_pred cCCCccch--HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence 63222212 2245789999999999999999999999999876543 3455667788888888876542 3345
Q ss_pred HHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCC--------------hhHHHHHHH------------------
Q 009514 333 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE--------------PSVQEQALA------------------ 380 (533)
Q Consensus 333 ~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~--------------~~v~~~a~~------------------ 380 (533)
...++.|..++.+. |.......+.+....+..+|...+ +.-+-....
T Consensus 402 ~~vIrmls~msS~~-pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~ 480 (1051)
T KOG0168|consen 402 TGVIRMLSLMSSGS-PLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVD 480 (1051)
T ss_pred hHHHHHHHHHccCC-hHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehh
Confidence 55666777776543 444544445444444444443110 000000000
Q ss_pred ------------------------------HHHHhhc----C-----------CcchHHHHHhhc--------CchHHHH
Q 009514 381 ------------------------------LVRNLVD----G-----------RINSVEYIFAED--------GIILDAV 407 (533)
Q Consensus 381 ------------------------------~L~~l~~----~-----------~~~~~~~i~~~~--------~~~~~~L 407 (533)
+...+.+ + +.+....++.+. ..+++.|
T Consensus 481 ~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~~llpVL 560 (1051)
T KOG0168|consen 481 CSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGKDLLPVL 560 (1051)
T ss_pred hhhhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHHHHHHHH
Confidence 0001111 0 000111122211 1167888
Q ss_pred HHHhccCCchhHHHHHHHHHHHhcc-CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCC
Q 009514 408 GRQLRIASKAEIEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPG 486 (533)
Q Consensus 408 ~~~L~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~ 486 (533)
++...++.++.|+..|+.+|..+.+ .+.+....++. +.++-.++..+|.+.|..+...|....--|.. +-+.
T Consensus 561 veVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk------~~~vSS~lAG~lsskD~~vlVgALQvAEiLme-Klpd 633 (1051)
T KOG0168|consen 561 VEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLK------NTNVSSHLAGMLSSKDLTVLVGALQVAEILME-KLPD 633 (1051)
T ss_pred HHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHh------cchHHHHHHhhhhcCCCeeEeehHHHHHHHHH-HhHH
Confidence 8888888899999999999999887 33445555554 37777888999998887766555544433332 0001
Q ss_pred cHHHHHHHHHCCcHHHHHhhhcCCCC
Q 009514 487 SSGRLVKLHDAGIVSHVKNMVNDPCL 512 (533)
Q Consensus 487 ~~~~~~~l~~~g~~~~L~~ll~~~~~ 512 (533)
-....++..|++.++.+|..+.++
T Consensus 634 --~F~~~F~REGV~~~v~~L~~~~~~ 657 (1051)
T KOG0168|consen 634 --TFSPSFRREGVFHAVKQLSVDSNP 657 (1051)
T ss_pred --HhhhhHhhhhHHHHHHHHhccCCc
Confidence 124578899999999999874433
No 38
>PTZ00429 beta-adaptin; Provisional
Probab=99.49 E-value=1.5e-09 Score=114.45 Aligned_cols=433 Identities=12% Similarity=0.152 Sum_probs=275.5
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF 95 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~ 95 (533)
-+++.+.+=++++++.+|-.|.++++++.. ++ +. .-.++++.+.+.. ++-||..|+.|+.++...+|+...
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~----i~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~-- 176 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRV-SS----VL-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFY-- 176 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HH----HH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCccccc--
Confidence 356778888888899999999998888763 22 11 1244566666665 788999999999999877775531
Q ss_pred ccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcC
Q 009514 96 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAE 174 (533)
Q Consensus 96 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~ 174 (533)
..+.++.+.+++.+.++.|..+|+.+|..+....+.. .....+.+..|+..+.+ +++.+.....+|....-.
T Consensus 177 ----~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~---l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~ 249 (746)
T PTZ00429 177 ----QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK---IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPS 249 (746)
T ss_pred ----ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh---hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCC
Confidence 2456788888999999999999999999997755431 12334556666666664 456677777777654322
Q ss_pred CHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccc-hhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHH
Q 009514 175 KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL-ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMC 253 (533)
Q Consensus 175 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~-~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~ 253 (533)
+..-. ...+..+...|...+ +.+...|++++.++.... +....... ...-++++.+ .+.++++|..+...
T Consensus 250 ~~~e~-----~~il~~l~~~Lq~~N--~AVVl~Aik~il~l~~~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~ 320 (746)
T PTZ00429 250 DKESA-----ETLLTRVLPRMSHQN--PAVVMGAIKVVANLASRCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKN 320 (746)
T ss_pred CcHHH-----HHHHHHHHHHhcCCC--HHHHHHHHHHHHHhcCcCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHH
Confidence 22111 123455666666653 678888899888887532 22211111 1123555655 45678999999988
Q ss_pred HHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHH
Q 009514 254 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL 333 (533)
Q Consensus 254 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 333 (533)
|..+....+. +... .+..+.-...+ ...++...+..|..++.. .+... ++..|.+++.+.+.+++.
T Consensus 321 I~~i~~~~P~-----lf~~-~~~~Ff~~~~D-p~yIK~~KLeIL~~Lane--~Nv~~-----IL~EL~eYa~d~D~ef~r 386 (746)
T PTZ00429 321 IHALLVIFPN-----LLRT-NLDSFYVRYSD-PPFVKLEKLRLLLKLVTP--SVAPE-----ILKELAEYASGVDMVFVV 386 (746)
T ss_pred HHHHHHHCHH-----HHHH-HHHhhhcccCC-cHHHHHHHHHHHHHHcCc--ccHHH-----HHHHHHHHhhcCCHHHHH
Confidence 8777654322 2222 23333333344 446899999999999853 33322 456777888888999999
Q ss_pred HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh--
Q 009514 334 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL-- 411 (533)
Q Consensus 334 ~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L-- 411 (533)
.++.++++++...+. .....++.|++++++... +...++..+.++....|+.. ++..+...+
T Consensus 387 ~aIrAIg~lA~k~~~------~a~~cV~~Ll~ll~~~~~-~v~e~i~vik~IlrkyP~~~---------il~~L~~~~~~ 450 (746)
T PTZ00429 387 EVVRAIASLAIKVDS------VAPDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKYPELL---------MLDTLVTDYGA 450 (746)
T ss_pred HHHHHHHHHHHhChH------HHHHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHCccHH---------HHHHHHHhhcc
Confidence 999999999864321 223456778888876544 45578888999987766421 233333322
Q ss_pred ccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHH
Q 009514 412 RIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRL 491 (533)
Q Consensus 412 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 491 (533)
..-.+++.+...+|+|+.++..-++ . ..++..+++-+...+..||.+...+...+.... ++..
T Consensus 451 ~~i~e~~AKaaiiWILGEy~~~I~~-a------------~~~L~~~i~~f~~E~~~VqlqlLta~vKlfl~~----p~~~ 513 (746)
T PTZ00429 451 DEVVEEEAKVSLLWMLGEYCDFIEN-G------------KDIIQRFIDTIMEHEQRVQLAILSAAVKMFLRD----PQGM 513 (746)
T ss_pred cccccHHHHHHHHHHHHhhHhhHhh-H------------HHHHHHHHhhhccCCHHHHHHHHHHHHHHHhcC----cHHH
Confidence 2225688999999999998642211 1 123334444445567789999888888777521 1111
Q ss_pred HHHHHCCcHHHHH-hhh-cCCCCcHHHHHHHHHHHH
Q 009514 492 VKLHDAGIVSHVK-NMV-NDPCLDVKLRVKTALEQF 525 (533)
Q Consensus 492 ~~l~~~g~~~~L~-~ll-~~~~~~v~~~a~~aL~~~ 525 (533)
+. .+..+. ... .+.++|+|.||.....-+
T Consensus 514 ~~-----~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 514 EP-----QLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred HH-----HHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 11 123333 333 357889999987655443
No 39
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=3.4e-10 Score=113.58 Aligned_cols=432 Identities=16% Similarity=0.113 Sum_probs=258.7
Q ss_pred hHHHHHhhcCChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhc--CChhhHHHHHHHHHHhhhcCCCcc
Q 009514 60 LKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKD--RFARTRLLASLCLIVIRNASPCYL 137 (533)
Q Consensus 60 i~~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~ 137 (533)
++.|...+..+..++..|=.-|.+.+..|= ...+..+.+.+.+ .+...|..|.-.|.|-...++.+.
T Consensus 4 ~~~le~tlSpD~n~~~~Ae~~l~~~~~~nf-----------~~F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~ 72 (859)
T KOG1241|consen 4 LELLEKTLSPDQNVRKRAEKQLEQAQSQNF-----------PQFLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPER 72 (859)
T ss_pred HHHHHHHcCCCcchHHHHHHHHHHHHhccH-----------HHHHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHH
Confidence 344444444455556666555555443321 1233334443322 233457777766666554442211
Q ss_pred h----------hhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhh----cCCCCc
Q 009514 138 Q----------DVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQ----KGSLHP 202 (533)
Q Consensus 138 ~----------~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~----~~~~~~ 202 (533)
+ +.-.++.+-..+.+.|+. .+.....|+++++.++...-.. +..|-|+..|. +.. ..
T Consensus 73 k~~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~-------n~wp~li~~lv~nv~~~~-~~ 144 (859)
T KOG1241|consen 73 KQQYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQ-------NQWPELIVTLVSNVGEEQ-AS 144 (859)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCch-------hhCHHHHHHHHHhccccc-ch
Confidence 1 111122333344566663 3566677888888887543221 23344444343 332 23
Q ss_pred hhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC--CCCHHHHHHHHHHHHHHh-hccccccchhhhhcCcHHHHH
Q 009514 203 RRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA--HDSSDVRSAACMCLRSVS-RSIKNLSAGSFMNETIVIPLV 279 (533)
Q Consensus 203 ~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~--~~~~~v~~~a~~~L~~ls-~~~~~~~~~~~~~~~~i~~Lv 279 (533)
.+++..+.+++.+|.+-..-...-....++..++..+. .++..||.+|..+|.+-- ....+.... .-..=+++..+
T Consensus 145 ~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E-~ern~iMqvvc 223 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNE-MERNYIMQVVC 223 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccH-hhhceeeeeee
Confidence 58899999999999743211111112356777777765 457899999999998642 221233333 22233456667
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccC-------------
Q 009514 280 RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLA------------- 346 (533)
Q Consensus 280 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~------------- 346 (533)
+.-+++|.+++.+|..+|..+..-+...-+..++......-+.-++++++++...++..=+++|...
T Consensus 224 Eatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~ 303 (859)
T KOG1241|consen 224 EATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQ 303 (859)
T ss_pred ecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7778899999999999999998766665555555566667778889999999999998888887521
Q ss_pred --ChHhHHHHHH--hhcHHHHHhhhCC-------CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCC
Q 009514 347 --EDKCKEEIFM--ELTASLLASLICD-------PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS 415 (533)
Q Consensus 347 --~~~~~~~i~~--~~~~~~l~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~ 415 (533)
+|.++..... ...+|.|+++|.. +++..-..|-.+|.-++....+ .+++ . +++.+-..+++ +
T Consensus 304 ~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~-~--Vl~Fiee~i~~-p 376 (859)
T KOG1241|consen 304 GLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVP-H--VLPFIEENIQN-P 376 (859)
T ss_pred CCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchh-h--hHHHHHHhcCC-c
Confidence 1101100000 1356778887742 2344444444334333322111 1222 1 55556556666 8
Q ss_pred chhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHH
Q 009514 416 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLH 495 (533)
Q Consensus 416 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~ 495 (533)
+..-++.+..+++.+..|.+..+..-+. .+++|.++.++.++.-.++..++|+++.++.. -.........
T Consensus 377 dwr~reaavmAFGSIl~gp~~~~Lt~iV-------~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~---l~e~~~n~~~ 446 (859)
T KOG1241|consen 377 DWRNREAAVMAFGSILEGPEPDKLTPIV-------IQALPSIINLMSDPSLWVKDTAAWTLGRIADF---LPEAIINQEL 446 (859)
T ss_pred chhhhhHHHHHHHhhhcCCchhhhhHHH-------hhhhHHHHHHhcCchhhhcchHHHHHHHHHhh---chhhcccHhh
Confidence 8889999999999999876644443333 57889999999988888999999999999942 1111112223
Q ss_pred HCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514 496 DAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 496 ~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~ 529 (533)
..+.++.+.+=+.| .|.+-.++.||+.++.+-.
T Consensus 447 l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~ 479 (859)
T KOG1241|consen 447 LQSKLSALLEGLND-EPRVASNVCWAFISLAEAA 479 (859)
T ss_pred hhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHH
Confidence 34556666666654 7888899999999998643
No 40
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.45 E-value=4.5e-10 Score=109.03 Aligned_cols=470 Identities=15% Similarity=0.119 Sum_probs=269.6
Q ss_pred cchHHHHhhhcCCC-cchhHHHHHHHHHhhcCchhHHHHHhcCc--hHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhh
Q 009514 17 ENMEFLLSLLNNES-ENVSGLGASIISHSCKTSLEQKLLFDAGV--LKRLTSLLGG--SLIQRDASLESIATIFKNNPEV 91 (533)
Q Consensus 17 ~~i~~L~~lL~~~~-~~v~~~a~~~l~~~~~~~~~~~~i~~~g~--i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~ 91 (533)
+-+..++.....+. ...+..+..+++..|....-+..+...+. +.....-++. +..+|..++.||..-+.. +
T Consensus 133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f---v 209 (858)
T COG5215 133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMF---V 209 (858)
T ss_pred HHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH---H
Confidence 44555566666554 45566788888888865443333333322 2233333443 458999999999873321 1
Q ss_pred hhhhccccCccc-HHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHH
Q 009514 92 VSQFVGPDTGRT-LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFS 169 (533)
Q Consensus 92 ~~~~~~~~~~~~-i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~ 169 (533)
+..+...+.... ...+.+..+.++.++|.+|-.||..+....-. ......+.-......+.+++ ++.+...+.+.-+
T Consensus 210 ~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~-fm~~ymE~aL~alt~~~mks~nd~va~qavEfWs 288 (858)
T COG5215 210 QGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYK-FMQSYMENALAALTGRFMKSQNDEVAIQAVEFWS 288 (858)
T ss_pred HHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 122211112223 33456678899999999999999988765321 11112222223333444543 3444444443332
Q ss_pred hhhcCCHHH------------HHH----HHHcCcHHHHHHhhhcCCCC--------------------------------
Q 009514 170 SLIAEKEDM------------QKL----AFEVNGVDKLYNHLQKGSLH-------------------------------- 201 (533)
Q Consensus 170 ~l~~~~~~~------------~~~----~~~~~~l~~L~~~L~~~~~~-------------------------------- 201 (533)
.+.+..-+. +.. ..-.+.+|.|+++|.+..++
T Consensus 289 ticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl 368 (858)
T COG5215 289 TICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVL 368 (858)
T ss_pred HHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHH
Confidence 222111100 000 01123578888888764321
Q ss_pred -----------chhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhh
Q 009514 202 -----------PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFM 270 (533)
Q Consensus 202 -----------~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~ 270 (533)
+..|+.++.+++.+.....+....-.-.+.+|.+...+.++.--++..++||++.++.+.... +-
T Consensus 369 ~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~----i~ 444 (858)
T COG5215 369 GFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMI----IS 444 (858)
T ss_pred HHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHh----cC
Confidence 235788888888887654333333334578899999999888899999999999998764431 22
Q ss_pred hcCcHHHHHHhhc---CCCHHHHHHHHHHHHHHhcCCchhH---HHHHH---hCcHHHHHHhh--cCCCHHHHHHHHHHH
Q 009514 271 NETIVIPLVRLLD---DTSTAVQVAALGAISNIVVDFTTRR---STFIR---LGGVKLLVQLS--KSMDSTIRLNALRAL 339 (533)
Q Consensus 271 ~~~~i~~Lv~lL~---~~~~~v~~~a~~aL~nl~~~~~~~~---~~~~~---~~~i~~L~~ll--~~~~~~~~~~al~aL 339 (533)
-.+.++..++-+. .++|.+...++|+.-|++.+..+.. +.++. ..++..|++-. ...+...|..+..+|
T Consensus 445 p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaL 524 (858)
T COG5215 445 PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSAL 524 (858)
T ss_pred ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 2344444443221 3578889999999999987654432 11111 12334444322 234456788888899
Q ss_pred HHhhccCChHhHHHHH-------Hh--hcHHHHHhhhCCC----ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHH
Q 009514 340 RNLIFLAEDKCKEEIF-------ME--LTASLLASLICDP----EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA 406 (533)
Q Consensus 340 ~~l~~~~~~~~~~~i~-------~~--~~~~~l~~lL~~~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~ 406 (533)
+.+....+....+.+. +. ..+..+-+.+... -.++|.+-++.|..+....+..++.+- ++++++
T Consensus 525 gtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~---D~lm~L 601 (858)
T COG5215 525 GTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVE---DQLMEL 601 (858)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHH---HHHHHH
Confidence 8887644322222111 00 0122222223222 246777777777777655443332221 237888
Q ss_pred HHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCC
Q 009514 407 VGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPG 486 (533)
Q Consensus 407 L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~ 486 (533)
+.++|++.....+......+|++++.+-++..+... ..++|.+.+-|+..|..+...|++.++.++.. -+
T Consensus 602 f~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~--------~~fiPyl~~aln~~d~~v~~~avglvgdlant--l~ 671 (858)
T COG5215 602 FIRILESTKPTTAFGDVYTAISALSTSLEERFEQYA--------SKFIPYLTRALNCTDRFVLNSAVGLVGDLANT--LG 671 (858)
T ss_pred HHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHH--------hhhhHHHHHHhcchhHHHHHHHHHHHHHHHHH--hh
Confidence 889998833445677788899999886555555554 47889999999889999999999999999941 11
Q ss_pred cHHHHHHHHHCCcHHHHHhhhcCC
Q 009514 487 SSGRLVKLHDAGIVSHVKNMVNDP 510 (533)
Q Consensus 487 ~~~~~~~l~~~g~~~~L~~ll~~~ 510 (533)
+ ...... .-....|++.+.++
T Consensus 672 ~--df~~y~-d~~ms~LvQ~lss~ 692 (858)
T COG5215 672 T--DFNIYA-DVLMSSLVQCLSSE 692 (858)
T ss_pred h--hHHHHH-HHHHHHHHHHhcCh
Confidence 1 112222 22346777877644
No 41
>PTZ00429 beta-adaptin; Provisional
Probab=99.43 E-value=3e-09 Score=112.11 Aligned_cols=349 Identities=15% Similarity=0.119 Sum_probs=225.4
Q ss_pred ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHH
Q 009514 70 SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINN 149 (533)
Q Consensus 70 ~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~ 149 (533)
++.+|..|+++++.+-. ++... -.+..+.+.+.+.++.||..|+.|+.++++..++ .+...+.++.
T Consensus 118 Np~IRaLALRtLs~Ir~--~~i~e--------~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe----lv~~~~~~~~ 183 (746)
T PTZ00429 118 SPVVRALAVRTMMCIRV--SSVLE--------YTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ----LFYQQDFKKD 183 (746)
T ss_pred CHHHHHHHHHHHHcCCc--HHHHH--------HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc----cccccchHHH
Confidence 45566666666665422 22221 2355567788999999999999999999987653 2335678999
Q ss_pred HHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh
Q 009514 150 LLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS 228 (533)
Q Consensus 150 L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 228 (533)
|.+++.| ++.+...|..+|..+...++.. .-...+.+..|+..|.+.+ +| .+...+..|... .+..... .
T Consensus 184 L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~-EW-~Qi~IL~lL~~y---~P~~~~e--~ 254 (746)
T PTZ00429 184 LVELLNDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECN-EW-GQLYILELLAAQ---RPSDKES--A 254 (746)
T ss_pred HHHHhcCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCC-hH-HHHHHHHHHHhc---CCCCcHH--H
Confidence 9999985 5678899999999887654431 2223444666777666543 34 345566665442 2211111 1
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc-cccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 009514 229 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK-NLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR 307 (533)
Q Consensus 229 ~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 307 (533)
...+..+...|++.|+.|...|++++.+++...+ ..... .-....++|+.++ +++++++..++..|.-++...+
T Consensus 255 ~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~--~~~rl~~pLv~L~-ss~~eiqyvaLr~I~~i~~~~P-- 329 (746)
T PTZ00429 255 ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIER--CTVRVNTALLTLS-RRDAETQYIVCKNIHALLVIFP-- 329 (746)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHH--HHHHHHHHHHHhh-CCCccHHHHHHHHHHHHHHHCH--
Confidence 3578888889999999999999999999875421 11111 1122346677774 5678999999999987776443
Q ss_pred HHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514 308 RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 387 (533)
Q Consensus 308 ~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~ 387 (533)
.+++.. +..+.....+ ...+|...+..|..++...+ -..++ .-|.+...+.+.+++..++.+++.++.
T Consensus 330 --~lf~~~-~~~Ff~~~~D-p~yIK~~KLeIL~~Lane~N---v~~IL-----~EL~eYa~d~D~ef~r~aIrAIg~lA~ 397 (746)
T PTZ00429 330 --NLLRTN-LDSFYVRYSD-PPFVKLEKLRLLLKLVTPSV---APEIL-----KELAEYASGVDMVFVVEVVRAIASLAI 397 (746)
T ss_pred --HHHHHH-HHhhhcccCC-cHHHHHHHHHHHHHHcCccc---HHHHH-----HHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 333322 4444333343 34689999999999976332 23333 445566678899999999999999997
Q ss_pred CCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhh---ccC
Q 009514 388 GRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL---QSN 464 (533)
Q Consensus 388 ~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L---~~~ 464 (533)
.-+..... +++.|..++.. . .++..+++.++.++....++. .+ ++.++..+ .-.
T Consensus 398 k~~~~a~~-------cV~~Ll~ll~~-~-~~~v~e~i~vik~IlrkyP~~--~i------------l~~L~~~~~~~~i~ 454 (746)
T PTZ00429 398 KVDSVAPD-------CANLLLQIVDR-R-PELLPQVVTAAKDIVRKYPEL--LM------------LDTLVTDYGADEVV 454 (746)
T ss_pred hChHHHHH-------HHHHHHHHhcC-C-chhHHHHHHHHHHHHHHCccH--HH------------HHHHHHhhcccccc
Confidence 65433322 56677777765 3 234556777777776544421 12 23444433 225
Q ss_pred ChhHHHHHHHHHHhhcC
Q 009514 465 DSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 465 ~~~v~~~a~~~L~~l~~ 481 (533)
+++.|...+|.|+.++.
T Consensus 455 e~~AKaaiiWILGEy~~ 471 (746)
T PTZ00429 455 EEEAKVSLLWMLGEYCD 471 (746)
T ss_pred cHHHHHHHHHHHHhhHh
Confidence 67899999999999984
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.42 E-value=2.7e-12 Score=105.84 Aligned_cols=118 Identities=26% Similarity=0.288 Sum_probs=106.5
Q ss_pred hhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 009514 225 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF 304 (533)
Q Consensus 225 ~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 304 (533)
.+++.|+++.++++++++++.++..++++|.+++...+..... +.+.|+++.+++++.+++++++..++++|+|++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQA-VVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHH-HHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 3567899999999999999999999999999999874444444 677899999999999999999999999999999887
Q ss_pred chhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514 305 TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 343 (533)
Q Consensus 305 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~ 343 (533)
+.....+.+.|+++.+++++...+..++..++++|.+++
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 777778888999999999999999999999999999986
No 43
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.38 E-value=1.3e-11 Score=101.73 Aligned_cols=118 Identities=28% Similarity=0.282 Sum_probs=107.9
Q ss_pred hhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh
Q 009514 269 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED 348 (533)
Q Consensus 269 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~ 348 (533)
+.+.|+++.|++++.+++++++..++++|++++...+.....+.+.|+++.++.++.++++.++..++++|+|++.+ ++
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~-~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG-PE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC-cH
Confidence 56789999999999999999999999999999988778888888899999999999999999999999999999875 34
Q ss_pred HhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514 349 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 387 (533)
Q Consensus 349 ~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~ 387 (533)
..+..+.+.+.++.+++++.+.+.++++.++++|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 567778888999999999999999999999999999863
No 44
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=9.3e-09 Score=98.19 Aligned_cols=389 Identities=12% Similarity=0.090 Sum_probs=263.5
Q ss_pred cchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHh--cCChhhhhhhccccCcccHHHH
Q 009514 31 ENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIF--KNNPEVVSQFVGPDTGRTLSCI 107 (533)
Q Consensus 31 ~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~--~~~~~~~~~~~~~~~~~~i~~l 107 (533)
+..-..|...|.+++.+......+++...+..|++.|.. +.++......-|-.++ .+|...- ...+.+..+
T Consensus 277 eqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M------~~~~iveKL 350 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVM------EQNGIVEKL 350 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHH------HhccHHHHH
Confidence 344456788889999877777788999999999999985 5555555555555553 2333321 236789999
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHHHHcCc
Q 009514 108 IEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNG 187 (533)
Q Consensus 108 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 187 (533)
++++...+++.+....+.+.|++.+... +..++..|.+|.|..+++++.. +.-|...+-.++.++.. +..+...++
T Consensus 351 ~klfp~~h~dL~~~tl~LlfNlSFD~gl--r~KMv~~GllP~l~~ll~~d~~-~~iA~~~lYh~S~dD~~-K~MfayTdc 426 (791)
T KOG1222|consen 351 LKLFPIQHPDLRKATLMLLFNLSFDSGL--RPKMVNGGLLPHLASLLDSDTK-HGIALNMLYHLSCDDDA-KAMFAYTDC 426 (791)
T ss_pred HHhcCCCCHHHHHHHHHHhhhccccccc--cHHHhhccchHHHHHHhCCccc-chhhhhhhhhhccCcHH-HHHHHHHHH
Confidence 9999999999999999999999987754 5568899999999999985432 23456677777766543 334445678
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHh-cCCCCHHHHHHHHHHHHHHhhccccccc
Q 009514 188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA-LAHDSSDVRSAACMCLRSVSRSIKNLSA 266 (533)
Q Consensus 188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~-L~~~~~~v~~~a~~~L~~ls~~~~~~~~ 266 (533)
++.+++.+-.+. ..++-...+...-++|.+. .+.+.+.+-+++..+++. ++..++.+ .+.+++++.+.+....
T Consensus 427 i~~lmk~v~~~~-~~~vdl~lia~ciNl~lnk-RNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn 500 (791)
T KOG1222|consen 427 IKLLMKDVLSGT-GSEVDLALIALCINLCLNK-RNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQN 500 (791)
T ss_pred HHHHHHHHHhcC-CceecHHHHHHHHHHHhcc-ccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHH
Confidence 888888665553 2333333333334676543 333445566688887774 55566544 5678999887443332
Q ss_pred hhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC--CHHHHHHHHHHHHHhh
Q 009514 267 GSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRALRNLI 343 (533)
Q Consensus 267 ~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~al~aL~~l~ 343 (533)
. |+ ..+..|...+. +.+.+...+|.++++|+....-+..+.+.+.+.+|.+-..++.. ..++....+-+++.++
T Consensus 501 ~-Fi--dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a 577 (791)
T KOG1222|consen 501 M-FI--DYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMA 577 (791)
T ss_pred H-HH--HHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhh
Confidence 2 33 45677777776 56777889999999999876566666666778889888777653 3456666666777776
Q ss_pred ccCChHhHHHHHHhhcHHHHHhhhC--CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHH
Q 009514 344 FLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI 421 (533)
Q Consensus 344 ~~~~~~~~~~i~~~~~~~~l~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~ 421 (533)
.. ..+..-+-..+.++.++++|+ ..|.+...+.+..+..+... ......++++.. .-..++.++.+ .+.++++
T Consensus 578 ~d--~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~miket~-~~AylIDLMHD-kN~eiRk 652 (791)
T KOG1222|consen 578 RD--LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIKETA-LGAYLIDLMHD-KNAEIRK 652 (791)
T ss_pred hh--hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHhhcc-chHHHHHHHhc-ccHHHHH
Confidence 53 335555566788999999996 34666777777666666554 223344454431 23456566665 8889999
Q ss_pred HHHHHHHHhccCChhhHHHHHH
Q 009514 422 QGMYVLGNVATGKESHKEAVMD 443 (533)
Q Consensus 422 ~a~~~L~~l~~~~~~~~~~~~~ 443 (533)
-|=.+|--++..+++..+.+-.
T Consensus 653 VCDn~LdIiae~d~EWAKrI~~ 674 (791)
T KOG1222|consen 653 VCDNALDIIAEHDKEWAKRIAG 674 (791)
T ss_pred HHHHHHHHHHHhhHHHHHHHhh
Confidence 8888888788766655555543
No 45
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.26 E-value=5e-09 Score=102.65 Aligned_cols=323 Identities=15% Similarity=0.126 Sum_probs=210.8
Q ss_pred hhHHHHHHhcCC--CCchhhhHHHHHHhhhcCCHHHHHHHHHc-----CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhc
Q 009514 145 KLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQKLAFEV-----NGVDKLYNHLQKGSLHPRRFEGILLALADMCS 217 (533)
Q Consensus 145 ~~i~~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~ 217 (533)
.....++.+++. .+++.......+..|..+++...+.+.+. +...+++.+|..+ +.-+...+...++.+..
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~--d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQ--DQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCC--chhHHHHHHHHHHHHHh
Confidence 445556666652 33445555666666666666555555543 3456777877654 46688888888888875
Q ss_pred cchhhhHhhhhhchHHHHHHhcCCC-CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC--CCHHHHHHHH
Q 009514 218 KLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAAL 294 (533)
Q Consensus 218 ~~~~~~~~~~~~~~l~~l~~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~ 294 (533)
............-.++.+.+.++.+ +.+.+..++.+|..+.+. +..|.. +...++++.|+.+|+. .+..+++.++
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~-f~~~~~v~~L~~~L~~~~~~~Ql~Y~~l 208 (429)
T cd00256 131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFA-FVLADGVPTLVKLLSNATLGFQLQYQSI 208 (429)
T ss_pred cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHH-HHHccCHHHHHHHHhhccccHHHHHHHH
Confidence 4332111111111344555666544 467778888999999887 556665 7788899999999974 3678999999
Q ss_pred HHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCC-----hHhHHHHHHhhcHHHHHhhhC
Q 009514 295 GAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAE-----DKCKEEIFMELTASLLASLIC 368 (533)
Q Consensus 295 ~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~-----~~~~~~i~~~~~~~~l~~lL~ 368 (533)
-++.-++... +......+.+.++.++++++.. .+++.+-++.++.|+..... ......+++.+.. .+++.|.
T Consensus 209 l~lWlLSF~~-~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~-~~l~~L~ 286 (429)
T cd00256 209 FCIWLLTFNP-HAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVL-KTLQSLE 286 (429)
T ss_pred HHHHHHhccH-HHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChH-HHHHHHh
Confidence 9999998654 3555566679999999999864 57788889999999986331 1233445555544 4444443
Q ss_pred C---CChhHHHHHH---------------------HHHHHhhcCCcchH-HHHHhh--------cCchHHHHHHHhccCC
Q 009514 369 D---PEPSVQEQAL---------------------ALVRNLVDGRINSV-EYIFAE--------DGIILDAVGRQLRIAS 415 (533)
Q Consensus 369 ~---~~~~v~~~a~---------------------~~L~~l~~~~~~~~-~~i~~~--------~~~~~~~L~~~L~~~~ 415 (533)
. +|+++.+..- ...+.....+|-+. +.++.+ +..++..|..+|..+.
T Consensus 287 ~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~ 366 (429)
T cd00256 287 QRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSV 366 (429)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 2 3443332211 11111111122221 222222 2237788999997667
Q ss_pred chhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514 416 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 416 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~ 480 (533)
++.+..-||+-|+.++...|..+. +++ +-|+-..+++++.++|++||.+|..|+..+-
T Consensus 367 d~~~laVAc~Dige~vr~~P~gr~-i~~------~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 367 DPIILAVACHDIGEYVRHYPRGKD-VVE------QLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred CcceeehhhhhHHHHHHHCccHHH-HHH------HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 888999999999999987765444 555 2678889999999999999999999998775
No 46
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=5.8e-08 Score=92.93 Aligned_cols=390 Identities=12% Similarity=0.088 Sum_probs=268.8
Q ss_pred hHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHH
Q 009514 71 LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL 150 (533)
Q Consensus 71 ~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L 150 (533)
..+...|+.-|.+++++..-- .... ....+.-+++.+...+...-.....+|..++-... ++..+.+.|.+..|
T Consensus 277 eqLLrva~ylLlNlAed~~~E-lKMr---rkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~e--NK~~M~~~~iveKL 350 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVE-LKMR---RKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDE--NKIVMEQNGIVEKL 350 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHH-HHHH---HHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhcc--chHHHHhccHHHHH
Confidence 345566778888888654221 1221 13466778888888888888888999999887654 46667889999999
Q ss_pred HHhcC-CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhh
Q 009514 151 LELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL 229 (533)
Q Consensus 151 ~~ll~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~ 229 (533)
++++. ..++++......+.|++.+.. .+..++..|.+|.+..+|.+... ..-|+..+..++.++ ..+..+...
T Consensus 351 ~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~KMv~~GllP~l~~ll~~d~~----~~iA~~~lYh~S~dD-~~K~MfayT 424 (791)
T KOG1222|consen 351 LKLFPIQHPDLRKATLMLLFNLSFDSG-LRPKMVNGGLLPHLASLLDSDTK----HGIALNMLYHLSCDD-DAKAMFAYT 424 (791)
T ss_pred HHhcCCCCHHHHHHHHHHhhhcccccc-ccHHHhhccchHHHHHHhCCccc----chhhhhhhhhhccCc-HHHHHHHHH
Confidence 99998 567888888899999987664 45678899999999998876631 245677788887654 666777788
Q ss_pred chHHHHHHhcC-CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCchh
Q 009514 230 QVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL-LDDTSTAVQVAALGAISNIVVDFTTR 307 (533)
Q Consensus 230 ~~l~~l~~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~ 307 (533)
..++.+.+.+- ..+.+|-......-.|++.+..+.. . +.+..++..|++. ++..|+-+ ...++|++.+.+..
T Consensus 425 dci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQ-l-vceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~t 498 (791)
T KOG1222|consen 425 DCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQ-L-VCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGAT 498 (791)
T ss_pred HHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccce-E-EecCcchHHHHHHHhcccchHH----HHHHHHhhhccchH
Confidence 89999888654 3455555544444457776533322 1 3556678888774 34555533 34677888766655
Q ss_pred HHHHHHhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC--CChhHHHHHHHHHHH
Q 009514 308 RSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD--PEPSVQEQALALVRN 384 (533)
Q Consensus 308 ~~~~~~~~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~--~~~~v~~~a~~~L~~ 384 (533)
+..++ +.+.-|...++.. ++.....++.+|+|+... +-+....+.+...+|.+-..|.. ...+++.+.+-+++.
T Consensus 499 qn~Fi--dyvgdLa~i~~nd~~E~F~~EClGtlanL~v~-dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT 575 (791)
T KOG1222|consen 499 QNMFI--DYVGDLAGIAKNDNSESFGLECLGTLANLKVT-DLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGT 575 (791)
T ss_pred HHHHH--HHHHHHHHHhhcCchHHHHHHHHHHHhhcccC-CCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhh
Confidence 55555 4566777766654 466788889999998763 33456666677788888887753 234566666666777
Q ss_pred hhcCCcchHHHHHhhcCchHHHHHHHhccC-CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc
Q 009514 385 LVDGRINSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS 463 (533)
Q Consensus 385 l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~ 463 (533)
++... ....++.-.+ +++.++.+|+.. .+++...+.+++..++... +..++.++. +...-..++.++++
T Consensus 576 ~a~d~--~cA~Lla~a~-~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~H-e~tr~~mik------et~~~AylIDLMHD 645 (791)
T KOG1222|consen 576 MARDL--DCARLLAPAK-LIDTLIELLQACQEDDEFVVQIIYVFLQFLKH-ELTRRLMIK------ETALGAYLIDLMHD 645 (791)
T ss_pred hhhhh--HHHHHhCccc-cHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHh------hccchHHHHHHHhc
Confidence 66542 2333333333 778888888763 4678888888988888764 555666665 35555789999999
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHH
Q 009514 464 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLH 495 (533)
Q Consensus 464 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~ 495 (533)
.+.++|+-|-.+|--++. ...++.+++.
T Consensus 646 kN~eiRkVCDn~LdIiae----~d~EWAKrI~ 673 (791)
T KOG1222|consen 646 KNAEIRKVCDNALDIIAE----HDKEWAKRIA 673 (791)
T ss_pred ccHHHHHHHHHHHHHHHH----hhHHHHHHHh
Confidence 999999998888887774 3445555543
No 47
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=99.18 E-value=1.4e-07 Score=94.75 Aligned_cols=448 Identities=15% Similarity=0.148 Sum_probs=260.3
Q ss_pred cccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCChHHHHHHH-----HHHHHHhcCCh
Q 009514 15 QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASL-----ESIATIFKNNP 89 (533)
Q Consensus 15 ~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~v~~~al-----~aL~~l~~~~~ 89 (533)
...++-.+.+-.+++|+..+.-..+++..||.....-........+|.+..-.-+ |+.|+ ..+...+ -
T Consensus 634 Trevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~----rrmA~drr~ykqlv~tt---v 706 (1172)
T KOG0213|consen 634 TREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWG----RRMALDRRNYKQLVDTT---V 706 (1172)
T ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhh----hhhhccccchhhHHHHH---H
Confidence 3445677777888999999999999999999765543344444455554443322 11111 0000000 0
Q ss_pred hhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC---CchhhhHHH
Q 009514 90 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP---GRVGDEASF 166 (533)
Q Consensus 90 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~~~~a~~ 166 (533)
.++..+ .....+..++.-++++++.-|...+.....+...-+..-.+....+..+..++-.+++. +.+......
T Consensus 707 ~ia~Kv---G~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg 783 (1172)
T KOG0213|consen 707 EIAAKV---GSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFG 783 (1172)
T ss_pred HHHHHh---CchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHH
Confidence 111111 12345666777788888888777777766655443222234455566666666666532 234444444
Q ss_pred HHHhhhcC--CHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhh--HhhhhhchHHHHHHhcCCC
Q 009514 167 AFSSLIAE--KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR--SRCLSLQVLKLVVDALAHD 242 (533)
Q Consensus 167 ~L~~l~~~--~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~--~~~~~~~~l~~l~~~L~~~ 242 (533)
++.+-... .+.... .+..++..|.+. ++.+|++|+..++.++.--..+. +.+...|. .|.++|...
T Consensus 784 ~V~~~lg~r~kpylpq------i~stiL~rLnnk--sa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgee 853 (1172)
T KOG0213|consen 784 TVVNALGGRVKPYLPQ------ICSTILWRLNNK--SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEE 853 (1172)
T ss_pred HHHHHHhhccccchHH------HHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcc
Confidence 44432211 111111 122233445554 48899999999998875322221 12223333 467889999
Q ss_pred CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh---HHHHHHhCcHHH
Q 009514 243 SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR---RSTFIRLGGVKL 319 (533)
Q Consensus 243 ~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~---~~~~~~~~~i~~ 319 (533)
.+++.-...+++..+.....-.... -=..+++|.|..+|++.+.++++.+...++.++...++. ++.+. +.=.
T Consensus 854 ypEvLgsILgAikaI~nvigm~km~-pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---Icfe 929 (1172)
T KOG0213|consen 854 YPEVLGSILGAIKAIVNVIGMTKMT-PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFE 929 (1172)
T ss_pred cHHHHHHHHHHHHHHHHhccccccC-CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHH
Confidence 9988877777777665443221111 123588999999999999999999999999999765542 33332 2334
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCCh-hHHHHHHHHHHHhhcCCcchHHHHHh
Q 009514 320 LVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP-SVQEQALALVRNLVDGRINSVEYIFA 398 (533)
Q Consensus 320 L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~i~~ 398 (533)
|+++|++-+.++|.+|..+++.++..-+| -++|..||+.=.. +-|...+.++. +..+-+
T Consensus 930 LlelLkahkK~iRRaa~nTfG~IakaIGP-----------qdVLatLlnnLkvqeRq~RvcTtva---------IaIVaE 989 (1172)
T KOG0213|consen 930 LLELLKAHKKEIRRAAVNTFGYIAKAIGP-----------QDVLATLLNNLKVQERQNRVCTTVA---------IAIVAE 989 (1172)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHhcCH-----------HHHHHHHHhcchHHHHHhchhhhhh---------hhhhhh
Confidence 67788888899999999999998765554 2344444432111 11111221111 111111
Q ss_pred hcCc--hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHH
Q 009514 399 EDGI--ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476 (533)
Q Consensus 399 ~~~~--~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L 476 (533)
..|. +++.|..--.. ++..||...+.+++.+...--+.....+ +.+.|.|...|-+.|...|..|+.++
T Consensus 990 ~c~pFtVLPalmneYrt-Pe~nVQnGVLkalsf~FeyigemskdYi--------yav~PlleDAlmDrD~vhRqta~~~I 1060 (1172)
T KOG0213|consen 990 TCGPFTVLPALMNEYRT-PEANVQNGVLKALSFMFEYIGEMSKDYI--------YAVTPLLEDALMDRDLVHRQTAMNVI 1060 (1172)
T ss_pred hcCchhhhHHHHhhccC-chhHHHHhHHHHHHHHHHHHHHHhhhHH--------HHhhHHHHHhhccccHHHHHHHHHHH
Confidence 1121 55555544444 6667888888888877652222222233 45678889999999999999999999
Q ss_pred HhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc-------CCCCcHHHHHHHHHHHHh
Q 009514 477 LNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN-------DPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 477 ~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~-------~~~~~v~~~a~~aL~~~~ 526 (533)
..++-+ ..| .|....++.||+ +++|-|..+...++..+.
T Consensus 1061 ~Hl~Lg-~~g----------~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r 1106 (1172)
T KOG0213|consen 1061 KHLALG-VPG----------TGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLR 1106 (1172)
T ss_pred HHHhcC-CCC----------cCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHH
Confidence 998863 222 234444444443 567777766666666654
No 48
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=99.13 E-value=2.1e-07 Score=90.89 Aligned_cols=305 Identities=11% Similarity=0.040 Sum_probs=187.5
Q ss_pred chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-----ChHHHHHHHHHHHHHhcCChhhh
Q 009514 18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-----SLIQRDASLESIATIFKNNPEVV 92 (533)
Q Consensus 18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-----~~~v~~~al~aL~~l~~~~~~~~ 92 (533)
+=...+.-|+++.+.....|+..++.++. ..+....|...+..+..+ ...++..++.+++++|+..+.
T Consensus 95 vK~~al~aL~s~epr~~~~Aaql~aaIA~-----~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P-- 167 (858)
T COG5215 95 VKGMALRALKSPEPRFCTMAAQLLAAIAR-----MELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP-- 167 (858)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHH-----hhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH--
Confidence 33566778888999999999999988873 223444454444444442 347889999999999865432
Q ss_pred hhhccccCcccHHHHHH-HHh-cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhc----C-CCCchhhhHH
Q 009514 93 SQFVGPDTGRTLSCIIE-IVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL----D-DPGRVGDEAS 165 (533)
Q Consensus 93 ~~~~~~~~~~~i~~l~~-ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll----~-~~~~~~~~a~ 165 (533)
+.+... .+..+-.++. -.+ .++..+|.+|+++|.+-... .+..+-.++-...+++.- + ++.+++..+.
T Consensus 168 e~li~~-sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~f----v~~nf~~E~erNy~mqvvceatq~~d~e~q~aaf 242 (858)
T COG5215 168 EDLIQM-SNVILFAIVMGALKNETTSAVRLAALKALMDSLMF----VQGNFCYEEERNYFMQVVCEATQGNDEELQHAAF 242 (858)
T ss_pred HHHHHH-hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHH----HHHhhcchhhhchhheeeehhccCCcHHHHHHHH
Confidence 112211 2334444544 333 56778999999999983221 111121223333444443 3 3456888888
Q ss_pred HHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhh----------------hh
Q 009514 166 FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL----------------SL 229 (533)
Q Consensus 166 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~----------------~~ 229 (533)
++|.++-.-.-...+...+........+.+++. +.++.-.++..-+-+|...-+..-... -.
T Consensus 243 gCl~kim~LyY~fm~~ymE~aL~alt~~~mks~--nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~ 320 (858)
T COG5215 243 GCLNKIMMLYYKFMQSYMENALAALTGRFMKSQ--NDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVA 320 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--chHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHH
Confidence 998877543222222222222122233444444 356666666655555542211111111 13
Q ss_pred chHHHHHHhcCC-------CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhh----cCCCHHHHHHHHHHHH
Q 009514 230 QVLKLVVDALAH-------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL----DDTSTAVQVAALGAIS 298 (533)
Q Consensus 230 ~~l~~l~~~L~~-------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL----~~~~~~v~~~a~~aL~ 298 (533)
+++|.++++|.. ++|.+..+|..||.-++...++ .++.+.+... +++++.=++.|+.|++
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---------~i~~pVl~FvEqni~~~~w~nreaavmAfG 391 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---------KIMRPVLGFVEQNIRSESWANREAAVMAFG 391 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---------HhHHHHHHHHHHhccCchhhhHHHHHHHhh
Confidence 488999999963 4678999999999888765322 3344444444 5788999999999999
Q ss_pred HHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 009514 299 NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL 345 (533)
Q Consensus 299 nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~ 345 (533)
.+..++......-+-..++|.+..++.++.-.++..+.|+++.++.+
T Consensus 392 Svm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 392 SVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH 438 (858)
T ss_pred hhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence 99977654333333357888888888877788899999999988754
No 49
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.4e-08 Score=103.12 Aligned_cols=259 Identities=16% Similarity=0.167 Sum_probs=192.5
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHH-hhccchhhhHhhhhhchHHHHHHhcCCC-CHHHHHHHHHHHHHHhhcccccc
Q 009514 188 VDKLYNHLQKGSLHPRRFEGILLALAD-MCSKLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLS 265 (533)
Q Consensus 188 l~~L~~~L~~~~~~~~~~~~a~~aL~~-l~~~~~~~~~~~~~~~~l~~l~~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~ 265 (533)
+.+|+.-|.... ++..+..++.-|.. |...+++.-..+--..++|.|+.+|+++ +.+++..||+||.+|+...+...
T Consensus 169 ~kkLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence 455666666653 45555555444443 3334444434444456899999999987 78999999999999998766666
Q ss_pred chhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514 266 AGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 344 (533)
Q Consensus 266 ~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~ 344 (533)
.. +++.+.||.|++-|. -.-.++.++++.||-.++...+. .++++|++...+.++.--...+++.|+.+..|+|.
T Consensus 248 a~-vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 248 AI-VVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred he-eecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 788999999998554 57789999999999999976543 88999999999999887777889999999999997
Q ss_pred cCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC---CcchHHHHHhhcCchHHHHHHHhccCC---chh
Q 009514 345 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG---RINSVEYIFAEDGIILDAVGRQLRIAS---KAE 418 (533)
Q Consensus 345 ~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~~~~~~~~L~~~L~~~~---~~~ 418 (533)
.-.++.-..+.+ .+|.|.++|+..|.+..+.++.++..++++ .++..+++...+ ++....++|.-.+ +..
T Consensus 324 si~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~d--Li~~~~qLlsvt~t~Ls~~ 399 (1051)
T KOG0168|consen 324 SIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHD--LITNIQQLLSVTPTILSNG 399 (1051)
T ss_pred cCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchh--HHHHHHHHHhcCccccccc
Confidence 655544445555 479999999999999999999999988866 456677777777 7777777776422 235
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 009514 419 IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ 462 (533)
Q Consensus 419 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~ 462 (533)
+....++.+.-++.+++-.+...+. .++...+..+|.
T Consensus 400 ~~~~vIrmls~msS~~pl~~~tl~k-------~~I~~~L~~il~ 436 (1051)
T KOG0168|consen 400 TYTGVIRMLSLMSSGSPLLFRTLLK-------LDIADTLKRILQ 436 (1051)
T ss_pred chhHHHHHHHHHccCChHHHHHHHH-------hhHHHHHHHHHh
Confidence 6677788888888887765555554 466666666554
No 50
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.10 E-value=4.4e-08 Score=96.13 Aligned_cols=316 Identities=15% Similarity=0.206 Sum_probs=213.1
Q ss_pred ccchHHHHhhhc-CCCcchhHHHHHHHHHhhcCchhHHH-HHhc-----CchHHHHHhhcC-ChHHHHHHHHHHHHHhcC
Q 009514 16 EENMEFLLSLLN-NESENVSGLGASIISHSCKTSLEQKL-LFDA-----GVLKRLTSLLGG-SLIQRDASLESIATIFKN 87 (533)
Q Consensus 16 ~~~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~~~~~~~-i~~~-----g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~ 87 (533)
+..+..++++|+ .+.+++.++....+..+......+.. +.+. ....+.+.+|.+ +.-+...+...|+.+...
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~ 131 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF 131 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence 467788999998 45688888888888888766555443 3332 345677778876 557889999999998654
Q ss_pred ChhhhhhhccccCcccHH----HHHHHHhcC-ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC---Cc
Q 009514 88 NPEVVSQFVGPDTGRTLS----CIIEIVKDR-FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP---GR 159 (533)
Q Consensus 88 ~~~~~~~~~~~~~~~~i~----~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~ 159 (533)
.+... .+..++ .+...++++ +...+..++.||..+..... .+..+...++++.|+++|+.. ..
T Consensus 132 ~~~~~-------~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~--~R~~f~~~~~v~~L~~~L~~~~~~~Q 202 (429)
T cd00256 132 GLAKM-------EGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE--YRFAFVLADGVPTLVKLLSNATLGFQ 202 (429)
T ss_pred Ccccc-------chhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch--HHHHHHHccCHHHHHHHHhhccccHH
Confidence 43221 122233 334455544 46778888899999888764 355567788999999999843 36
Q ss_pred hhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccc------hhhhHhhhhhchHH
Q 009514 160 VGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL------ECCRSRCLSLQVLK 233 (533)
Q Consensus 160 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~------~~~~~~~~~~~~l~ 233 (533)
++.+++.++.-++.+.+. .......+.++.++++++... -.++..-++.+|.|+...+ ......+++.|+.+
T Consensus 203 l~Y~~ll~lWlLSF~~~~-~~~~~~~~~i~~l~~i~k~s~-KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~ 280 (429)
T cd00256 203 LQYQSIFCIWLLTFNPHA-AEVLKRLSLIQDLSDILKEST-KEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK 280 (429)
T ss_pred HHHHHHHHHHHHhccHHH-HHhhccccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH
Confidence 788999999888776553 344556788999999888774 3556667788889988632 12233455556555
Q ss_pred HHHHhcCC---CCHHHHHHHHHHHHHHhhcc---------------ccccch--------------hhhh--cCcHHHHH
Q 009514 234 LVVDALAH---DSSDVRSAACMCLRSVSRSI---------------KNLSAG--------------SFMN--ETIVIPLV 279 (533)
Q Consensus 234 ~l~~~L~~---~~~~v~~~a~~~L~~ls~~~---------------~~~~~~--------------~~~~--~~~i~~Lv 279 (533)
. ++.|+. .|+++...--..-..|.... +.++++ +|-+ ...+..|+
T Consensus 281 ~-l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~ 359 (429)
T cd00256 281 T-LQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILI 359 (429)
T ss_pred H-HHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHH
Confidence 4 444442 24443322211111111100 111111 1222 23467899
Q ss_pred Hhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514 280 RLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 343 (533)
Q Consensus 280 ~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~ 343 (533)
++|. +.|+.+..-||.=|+.++..++..+..+-+.|+=..+++++.++|+++|.+|+.|+..+.
T Consensus 360 ~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 360 HLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 9995 668899999999999999988888877777888888999999999999999999998774
No 51
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=4.4e-06 Score=84.96 Aligned_cols=435 Identities=15% Similarity=0.173 Sum_probs=277.1
Q ss_pred ccchHHHHhhhcCC-CcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC---ChHHHHHHHHHHHHHhcCCh--
Q 009514 16 EENMEFLLSLLNNE-SENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNNP-- 89 (533)
Q Consensus 16 ~~~i~~L~~lL~~~-~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~v~~~al~aL~~l~~~~~-- 89 (533)
+..|+.|..=..+. =.+-|+.|+..|-.+++ .+|..+. ..|++++++.|.. ++.....++..+..+....+
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 45677777766643 35567778888877764 4555444 4567999999975 56788899999988865442
Q ss_pred hh--------------hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhH-hhhHHHHHHhc
Q 009514 90 EV--------------VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK-TKLINNLLELL 154 (533)
Q Consensus 90 ~~--------------~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~i~~L~~ll 154 (533)
.+ ...+. ...+.|..++..+...|..||..|...+..+....+.+.++.+.. .-+|..|+.+|
T Consensus 98 ~v~dds~qsdd~g~~iae~fi--k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL 175 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFI--KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL 175 (970)
T ss_pred hhcccchhhhHHHHHHHHHHH--cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence 11 11111 134567778889999999999999999999988877666665544 47899999999
Q ss_pred CCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCC-CCc-hhHHHHHHHHHHhhccchhhhHhhhhhch
Q 009514 155 DDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS-LHP-RRFEGILLALADMCSKLECCRSRCLSLQV 231 (533)
Q Consensus 155 ~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~-~~~-~~~~~a~~aL~~l~~~~~~~~~~~~~~~~ 231 (533)
.|. ..+|.++.-.|..+..+++..++.+.=.++...|..++.... .+. -+.+.|+..|.+|-.++..++..+.+.+.
T Consensus 176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~ 255 (970)
T KOG0946|consen 176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY 255 (970)
T ss_pred hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence 975 678999999999999999999998877888999999887542 222 46789999999999988888888999999
Q ss_pred HHHHHHhcCC---CC-----HHH-----HHHHHHHHHHHhhccccc------cchhhhhcCcHHHHHHhhcCC--CHHHH
Q 009514 232 LKLVVDALAH---DS-----SDV-----RSAACMCLRSVSRSIKNL------SAGSFMNETIVIPLVRLLDDT--STAVQ 290 (533)
Q Consensus 232 l~~l~~~L~~---~~-----~~v-----~~~a~~~L~~ls~~~~~~------~~~~~~~~~~i~~Lv~lL~~~--~~~v~ 290 (533)
+|.+.++|.. ++ |.- ...+..+++.+... ++. ++..+...+++..|..++-++ ..+++
T Consensus 256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP-~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIl 334 (970)
T KOG0946|consen 256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP-GNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADIL 334 (970)
T ss_pred HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHH
Confidence 9999988862 22 211 23344445544322 111 111145678888898888665 57899
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHhC---------cHHH-HHHhhcCC-CHHHHHHHHHHHHHhhccCChHhHHHHHHhhc
Q 009514 291 VAALGAISNIVVDFTTRRSTFIRLG---------GVKL-LVQLSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELT 359 (533)
Q Consensus 291 ~~a~~aL~nl~~~~~~~~~~~~~~~---------~i~~-L~~ll~~~-~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~ 359 (533)
..+.-++++...++..++..+.... .|-. ++.+..+. ....|.+.+.++..+.+.. .+.+.+++....
T Consensus 335 tesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN-~~gq~~~l~tll 413 (970)
T KOG0946|consen 335 TESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDN-DDGQRKFLKTLL 413 (970)
T ss_pred HHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcc-hhhHHHHHHHHh
Confidence 9999999999988877776665421 1222 23344433 4678889999998887643 344544444310
Q ss_pred -------------HHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhh-----cC----chHHHHHHH--hccCC
Q 009514 360 -------------ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE-----DG----IILDAVGRQ--LRIAS 415 (533)
Q Consensus 360 -------------~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-----~~----~~~~~L~~~--L~~~~ 415 (533)
=..++..+.+.|+---.-++-+|.++...+...-+.+.+- .| .++...... +....
T Consensus 414 p~~~nst~Nsl~ag~l~~~~l~s~d~~~nwFt~v~lmh~l~dn~~~kEeLlrV~l~~~~gn~p~tlL~~~ct~~~~~~t~ 493 (970)
T KOG0946|consen 414 PSSTNSTSNSLSAGQLLLVGLSSTDSLDNWFTAVILMHLLQDNDQLKEELLRVPLAVDTGNDPDTLLFQQCTNLKLQGTS 493 (970)
T ss_pred hhhccccccchhhhhHHHHhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcccCCCCchHHHHHHHHHHHHHhhh
Confidence 0112222333322211222223333332221111111110 01 022221111 11112
Q ss_pred chhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc
Q 009514 416 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS 463 (533)
Q Consensus 416 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~ 463 (533)
.+..+..-+..|+.+..+++.....++. +.+.++.|...+-+
T Consensus 494 r~qt~vglLmlL~~WL~~cp~AV~dFLs------~~s~iq~Ltt~l~~ 535 (970)
T KOG0946|consen 494 RHQTRVGLLMLLITWLYGCPDAVKDFLS------ESSIIQYLTTQLMD 535 (970)
T ss_pred hHHHHHHHHHHHHHHHcCCcHHHHHHHc------cccHHHHHHHHHhh
Confidence 3455555677777788888876666665 46777777776654
No 52
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=7.1e-07 Score=89.66 Aligned_cols=247 Identities=13% Similarity=0.132 Sum_probs=166.7
Q ss_pred HHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhh
Q 009514 63 LTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVG 141 (533)
Q Consensus 63 L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 141 (533)
++-+|.+ -+=+|.+|+-.+..++...|+-.+ ..+|.+.+-+.++||.|+-+|+..++.+++.+|....
T Consensus 149 v~tLL~sskpYvRKkAIl~lykvFLkYPeAlr--------~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--- 217 (877)
T KOG1059|consen 149 VFTLLNSSKPYVRKKAILLLYKVFLKYPEALR--------PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--- 217 (877)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh--------hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence 4555665 356889999999999877776542 4688999999999999999999999999998875432
Q ss_pred hHhhhHHHHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHH--hhc
Q 009514 142 IKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALAD--MCS 217 (533)
Q Consensus 142 ~~~~~i~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~--l~~ 217 (533)
..-|.+.+++. ++.++..+.....++|+--.+...+ ..+++|.+++.+... -.+.-.++.++-+ +..
T Consensus 218 ---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~A-mSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 218 ---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVA-MSLLYECVNTVVAVSMSS 288 (877)
T ss_pred ---cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHH-HHHHHHHHHHheeehhcc
Confidence 46688899997 4567778888888888877777654 457889988876531 1122223333222 121
Q ss_pred cchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHH
Q 009514 218 KLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAI 297 (533)
Q Consensus 218 ~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL 297 (533)
..++.-.. -.-.++.|-.++.+.++.+++-++-+++.+...++.. + ...-..++++|.+.|+.+|..|+..+
T Consensus 289 g~~d~~as--iqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~-----V-qa~kdlIlrcL~DkD~SIRlrALdLl 360 (877)
T KOG1059|consen 289 GMSDHSAS--IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKA-----V-QAHKDLILRCLDDKDESIRLRALDLL 360 (877)
T ss_pred CCCCcHHH--HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHH-----H-HHhHHHHHHHhccCCchhHHHHHHHH
Confidence 11111000 1125777888889999999999999999987654332 1 12345688899999999999999999
Q ss_pred HHHhcCCchhHHHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhc
Q 009514 298 SNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIF 344 (533)
Q Consensus 298 ~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~ 344 (533)
..++. ..+.. .++..|+..+. .+....|..-+.-+..+|.
T Consensus 361 ~gmVs--kkNl~-----eIVk~LM~~~~~ae~t~yrdell~~II~iCS 401 (877)
T KOG1059|consen 361 YGMVS--KKNLM-----EIVKTLMKHVEKAEGTNYRDELLTRIISICS 401 (877)
T ss_pred HHHhh--hhhHH-----HHHHHHHHHHHhccchhHHHHHHHHHHHHhh
Confidence 88874 22221 24556664443 3333555555555555554
No 53
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=1.8e-06 Score=84.55 Aligned_cols=353 Identities=14% Similarity=0.128 Sum_probs=225.3
Q ss_pred cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHH
Q 009514 101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK 180 (533)
Q Consensus 101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~ 180 (533)
.+.+++++..+.+.+..+|..|+..++|+++...... ......+...|.++..+.+.--..+++.+-++.++-..-+.
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v--~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEV--LVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA 160 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCc--ccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc
Confidence 3578899999999999999999999999988653321 12334566777777776554445666777766543211111
Q ss_pred HHHHcCcHHHHHHhhhcC--CCCchhHHHHHHHHHHhhccchhhhHhhh-hhchHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009514 181 LAFEVNGVDKLYNHLQKG--SLHPRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAHDSSDVRSAACMCLRSV 257 (533)
Q Consensus 181 ~~~~~~~l~~L~~~L~~~--~~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~l~~~L~~~~~~v~~~a~~~L~~l 257 (533)
. .=-++.++.+|... ..++..|...+.-|..+-... .. +.+. -...++.+.++|.+++++||..+-.++.++
T Consensus 161 ~---tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P-~~-~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~f 235 (675)
T KOG0212|consen 161 S---TFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP-DL-EMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEF 235 (675)
T ss_pred c---ccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC-cH-HHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 0 01245555544432 124677887777777664322 21 2222 235788899999999999998888888777
Q ss_pred hhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCH-HHHHHHH
Q 009514 258 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDS-TIRLNAL 336 (533)
Q Consensus 258 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~-~~~~~al 336 (533)
-....+.... +.-...++.++.-+.+++++++..|..-|..+..-++..- ...-.|++..++..+.+.++ ..+..+.
T Consensus 236 L~eI~s~P~s-~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~ 313 (675)
T KOG0212|consen 236 LAEIRSSPSS-MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQ 313 (675)
T ss_pred HHHHhcCccc-cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHH
Confidence 4432222222 2335678889999999999999999888888776544422 22234666666666665544 3444443
Q ss_pred HHH---HHhhccCChHhHHHHHHh-hcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc
Q 009514 337 RAL---RNLIFLAEDKCKEEIFME-LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR 412 (533)
Q Consensus 337 ~aL---~~l~~~~~~~~~~~i~~~-~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~ 412 (533)
..- ..++ +++..++. ++- ..++++.+.+.++..+.+..++.-+..+-...|. +++.....++..|.+.|+
T Consensus 314 ~~n~~l~~l~--s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~---ql~~h~~~if~tLL~tLs 387 (675)
T KOG0212|consen 314 MVNGLLLKLV--SSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPG---QLLVHNDSIFLTLLKTLS 387 (675)
T ss_pred HHHHHHHHHH--hhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcc---hhhhhccHHHHHHHHhhc
Confidence 222 2222 12222222 222 2478888899999999999999888888766554 344444447888888888
Q ss_pred cCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514 413 IASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 413 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~ 480 (533)
+ ++++|...++..+.+++....+. .. -.++..|.++......-+...+...+.+++
T Consensus 388 d-~sd~vvl~~L~lla~i~~s~~~~--~~---------~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC 443 (675)
T KOG0212|consen 388 D-RSDEVVLLALSLLASICSSSNSP--NL---------RKFLLSLLEMFKEDTKLLEVRGNLIIRQLC 443 (675)
T ss_pred C-chhHHHHHHHHHHHHHhcCcccc--cH---------HHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence 8 88999999999999999765432 11 123345555555555556667777777666
No 54
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=1.7e-06 Score=88.20 Aligned_cols=398 Identities=14% Similarity=0.161 Sum_probs=228.3
Q ss_pred hcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccH
Q 009514 26 LNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTL 104 (533)
Q Consensus 26 L~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i 104 (533)
|++++.-+...|..+|+++|...--|. ..|-+-++++. ++-+|.+|+.|..++..-.|+.... .+
T Consensus 116 L~s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~--------f~ 181 (866)
T KOG1062|consen 116 LNSSNQYVVGLALCALGNICSPEMARD------LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH--------FV 181 (866)
T ss_pred ccCCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH--------hh
Confidence 446677778888889998884322222 34556667765 6789999999999988888877543 45
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC---------C-------CCchhhhHHHHH
Q 009514 105 SCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD---------D-------PGRVGDEASFAF 168 (533)
Q Consensus 105 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~---------~-------~~~~~~~a~~~L 168 (533)
+.-.+++.+.+..|-..++..+..++..++. ..+ .....++-|+..|+ + ++-+|....+.|
T Consensus 182 ~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-~l~--~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlL 258 (866)
T KOG1062|consen 182 IAFRKLLCEKHHGVLIAGLHLITELCKISPD-ALS--YFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLL 258 (866)
T ss_pred HHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-HHH--HHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHH
Confidence 5666777777778777777777777776542 111 11235555555553 0 122456666666
Q ss_pred HhhhcCCHHHHHHHHH--------------------cCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhh-
Q 009514 169 SSLIAEKEDMQKLAFE--------------------VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL- 227 (533)
Q Consensus 169 ~~l~~~~~~~~~~~~~--------------------~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~- 227 (533)
.-+..++++....+.+ ..++..+..+ . .++..|+.|+.+|+.+-.+.+.+-+.+.
T Consensus 259 riLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I-~---~~~~LrvlainiLgkFL~n~d~NirYvaL 334 (866)
T KOG1062|consen 259 RILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI-R---SNSGLRVLAINILGKFLLNRDNNIRYVAL 334 (866)
T ss_pred HHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc-c---CCchHHHHHHHHHHHHhcCCccceeeeeh
Confidence 6666555443322211 0123333331 1 2356888888888888776554433221
Q ss_pred ---------hhc----hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHH
Q 009514 228 ---------SLQ----VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAAL 294 (533)
Q Consensus 228 ---------~~~----~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~ 294 (533)
+.. --..++++|++++..+|..|...+..+... .|.+ ..+..|+..|...+++++..++
T Consensus 335 n~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~-~Nv~-------~mv~eLl~fL~~~d~~~k~~~a 406 (866)
T KOG1062|consen 335 NMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE-SNVR-------VMVKELLEFLESSDEDFKADIA 406 (866)
T ss_pred hhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-ccHH-------HHHHHHHHHHHhccHHHHHHHH
Confidence 111 234578889999999999999998888765 3432 3466788888888999999999
Q ss_pred HHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHH----HHHhhcHHHHHhhhCCC
Q 009514 295 GAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEE----IFMELTASLLASLICDP 370 (533)
Q Consensus 295 ~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~----i~~~~~~~~l~~lL~~~ 370 (533)
.-+..++..+.+.+.+.++ .+.+.+......++..+...+..+..+..++.... +........ ++.-+
T Consensus 407 s~I~~laEkfaP~k~W~id-----tml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~---~~~is 478 (866)
T KOG1062|consen 407 SKIAELAEKFAPDKRWHID-----TMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDT---LLDIS 478 (866)
T ss_pred HHHHHHHHhcCCcchhHHH-----HHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhh---hhhhh
Confidence 9999999877665544442 33333333222222222222322222221111111 111111111 22234
Q ss_pred ChhHHHHHHHHHHHhh----cCCc-chHHHHHhhcCchHHHHHHHhccC-CchhHHHHHHHHHHHhccCChhhHHHHHHH
Q 009514 371 EPSVQEQALALVRNLV----DGRI-NSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKESHKEAVMDQ 444 (533)
Q Consensus 371 ~~~v~~~a~~~L~~l~----~~~~-~~~~~i~~~~~~~~~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 444 (533)
.+.+..-+.|+|+.-. .+.. +....+-++. ++..+.+.+.++ .+..++..++.++..+.....+..+.+
T Consensus 479 ~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesd--ivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~~~ri--- 553 (866)
T KOG1062|consen 479 QEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESD--IVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSSSERI--- 553 (866)
T ss_pred hhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHhhccccHHHH---
Confidence 4556777788887543 1100 0000111111 667777776654 356788999999999987654332222
Q ss_pred hhHhhhhhhHHHHHHhhccCChhHHHHHHH
Q 009514 445 LLLRAENKAQSCIIKFLQSNDSRLRTAAVW 474 (533)
Q Consensus 445 ~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~ 474 (533)
-..+..+..+.+.++|..|..
T Consensus 554 ---------~~lI~~~~~s~~~elQQRa~E 574 (866)
T KOG1062|consen 554 ---------KQLISSYKSSLDTELQQRAVE 574 (866)
T ss_pred ---------HHHHHHhcccccHHHHHHHHH
Confidence 133444555666677766654
No 55
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=5.1e-08 Score=91.10 Aligned_cols=189 Identities=19% Similarity=0.223 Sum_probs=150.7
Q ss_pred hhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCc
Q 009514 195 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI 274 (533)
Q Consensus 195 L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~ 274 (533)
+..++.+.+-++.|+.-|..++.+- ++-..+...|++.+++.++++.+..+|..|++.|+..+++.+..... +.+.|+
T Consensus 90 ~~~~s~~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~-v~E~~~ 167 (342)
T KOG2160|consen 90 LNSSSVDLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQ-VIELGA 167 (342)
T ss_pred cCcccCCHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHH-HHHccc
Confidence 4444456777888998888888643 44567888999999999999999999999999999999986665555 789999
Q ss_pred HHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhccCChHhH
Q 009514 275 VIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCK 351 (533)
Q Consensus 275 i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~al~aL~~l~~~~~~~~~ 351 (533)
.+.|+.++.+ ++..++..|..|++.+..++.+....+...++...|...+++ .+..++..++..+..+.... ...+
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~-~s~~ 246 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED-KSDE 246 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh-hhhh
Confidence 9999999974 566788999999999999999999899999999999999998 45778889999999998643 3333
Q ss_pred HHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514 352 EEIFMELTASLLASLICDPEPSVQEQALALVRNLV 386 (533)
Q Consensus 352 ~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~ 386 (533)
..+-..+....+..+....+.++.+.++.++..+.
T Consensus 247 d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l 281 (342)
T KOG2160|consen 247 DIASSLGFQRVLENLISSLDFEVNEAALTALLSLL 281 (342)
T ss_pred hHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 43344444555666667778888888887665554
No 56
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=9.6e-06 Score=82.90 Aligned_cols=386 Identities=15% Similarity=0.152 Sum_probs=207.7
Q ss_pred hHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHH
Q 009514 71 LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL 150 (533)
Q Consensus 71 ~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L 150 (533)
.-+...|+.+|++++. ++..+ ...|.+-+++++.++.+|..|+.|+..+.+..|+ ..+.+++..
T Consensus 121 q~vVglAL~alg~i~s--~Emar--------dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~------l~e~f~~~~ 184 (866)
T KOG1062|consen 121 QYVVGLALCALGNICS--PEMAR--------DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPD------LVEHFVIAF 184 (866)
T ss_pred eeehHHHHHHhhccCC--HHHhH--------HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCch------HHHHhhHHH
Confidence 3466788999999863 56654 3467788899999999999999999999887653 234577888
Q ss_pred HHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCC---C----------CchhHHHHHHHHHHhh
Q 009514 151 LELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGS---L----------HPRRFEGILLALADMC 216 (533)
Q Consensus 151 ~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~---~----------~~~~~~~a~~aL~~l~ 216 (533)
.++|.+ +..+.......+..+.+.+++.-....+ .++.|+..|++-. . +|-++...++.|
T Consensus 185 ~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlL---- 258 (866)
T KOG1062|consen 185 RKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLL---- 258 (866)
T ss_pred HHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHH----
Confidence 888874 5667777777888888776654443333 5666776665421 1 122333333333
Q ss_pred ccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHH
Q 009514 217 SKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALG 295 (533)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~ 295 (533)
.+|..++++........|..+++..+..+.. ..+=..+.+-.++. .++..++..|+.
T Consensus 259 --------------------riLGq~d~daSd~M~DiLaqvatntdsskN~--GnAILYE~V~TI~~I~~~~~Lrvlain 316 (866)
T KOG1062|consen 259 --------------------RILGQNDADASDLMNDILAQVATNTDSSKNA--GNAILYECVRTIMDIRSNSGLRVLAIN 316 (866)
T ss_pred --------------------HHhcCCCccHHHHHHHHHHHHHhcccccccc--hhHHHHHHHHHHHhccCCchHHHHHHH
Confidence 4444555555555555666655543221111 11111112222222 345556666666
Q ss_pred HHHHHhcCCchhHHHHHH----------hC----cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHH
Q 009514 296 AISNIVVDFTTRRSTFIR----------LG----GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTAS 361 (533)
Q Consensus 296 aL~nl~~~~~~~~~~~~~----------~~----~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~ 361 (533)
+|+.+..+...+.+.+.= .. -=..+++-++++|..+|..|++.+..++...+ .+ ..+.
T Consensus 317 iLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N--v~------~mv~ 388 (866)
T KOG1062|consen 317 ILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN--VR------VMVK 388 (866)
T ss_pred HHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc--HH------HHHH
Confidence 666655544433322110 00 01234455666677777777777766654322 11 1245
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc---CCchhHHHHHHHHHHHhccCChhhH
Q 009514 362 LLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI---ASKAEIEIQGMYVLGNVATGKESHK 438 (533)
Q Consensus 362 ~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~---~~~~~v~~~a~~~L~~l~~~~~~~~ 438 (533)
.++.+|...+++.+.....-+..+++.-...-.+ .++.+.+.|.. .-++++...-+..|.+-. .+.+.
T Consensus 389 eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W-------~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~--~e~~~ 459 (866)
T KOG1062|consen 389 ELLEFLESSDEDFKADIASKIAELAEKFAPDKRW-------HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAF--QELHE 459 (866)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchh-------HHHHHHHHHHhcccccchhhHHHHHHHHhcCC--cchhh
Confidence 6677787778888888888777777542211112 22333333333 123444444444544421 12222
Q ss_pred HHHHHHhhHhhhhhhHHHHH-H-hhccCChhHHHHHHHHHHhhcC-CCCCCcHHHHHHHHHCCcHHHHHhhhcCC--CCc
Q 009514 439 EAVMDQLLLRAENKAQSCII-K-FLQSNDSRLRTAAVWAVLNLTC-SSSPGSSGRLVKLHDAGIVSHVKNMVNDP--CLD 513 (533)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~lv-~-~L~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~l~~~g~~~~L~~ll~~~--~~~ 513 (533)
..+.. +...+. . ++.-....+..-+.|+|+.... --+++..+-.....++.++..|.+++... +..
T Consensus 460 y~~~r---------Ly~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~ 530 (866)
T KOG1062|consen 460 YAVLR---------LYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDST 530 (866)
T ss_pred HHHHH---------HHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHH
Confidence 22211 001111 1 1112334456788899988771 00111112222344566777888877543 445
Q ss_pred HHHHHHHHHHHHh
Q 009514 514 VKLRVKTALEQFN 526 (533)
Q Consensus 514 v~~~a~~aL~~~~ 526 (533)
++-.|..||..++
T Consensus 531 tk~yal~Al~KLS 543 (866)
T KOG1062|consen 531 TKGYALTALLKLS 543 (866)
T ss_pred HHHHHHHHHHHHH
Confidence 5556677776664
No 57
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.94 E-value=5.3e-07 Score=94.46 Aligned_cols=391 Identities=16% Similarity=0.118 Sum_probs=237.4
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcC
Q 009514 108 IEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVN 186 (533)
Q Consensus 108 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 186 (533)
-++.++..+.+|..++.-+.+++.... ......+.+|.+.++..|+ +.++..|...+..+...-..-. -....
T Consensus 243 ~~lc~d~~~~Vr~~~a~~l~~~a~~~~----~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~--d~~~~ 316 (759)
T KOG0211|consen 243 QSLCQDDTPMVRRAVASNLGNIAKVLE----SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD--DVVKS 316 (759)
T ss_pred HhhccccchhhHHHHHhhhHHHHHHHH----HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch--hhhhh
Confidence 457789999999999999999888643 2456778999999999864 6788877777776653211100 11223
Q ss_pred cHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccc
Q 009514 187 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA 266 (533)
Q Consensus 187 ~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~ 266 (533)
..+.+++...+. ++.++.........+.. ...........++.....+++..++++.+.+.-...++......+.
T Consensus 317 ~~~~l~~~~~d~--~~~v~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~ 391 (759)
T KOG0211|consen 317 LTESLVQAVEDG--SWRVSYMVADKFSELSS---AVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCY 391 (759)
T ss_pred hhHHHHHHhcCh--hHHHHHHHhhhhhhHHH---HhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccc
Confidence 457777755554 36666655555555542 2222233445688899999999999999998887777655332121
Q ss_pred hhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 009514 267 GSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLA 346 (533)
Q Consensus 267 ~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~ 346 (533)
..+....++|.+-.+..+.++.++.+.+..+.++..-.+ +...+ ....|.++..+++..+.++.+..+.+..+-...
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~ 468 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN 468 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhcc
Confidence 114555667888888889999999999988888764333 11111 245667777888888999999888776553222
Q ss_pred ChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHH
Q 009514 347 EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYV 426 (533)
Q Consensus 347 ~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~ 426 (533)
+ ......+....++.+..+-.+..+.++...++.+--++.... ..++... .-+.+...+.+ ..-+++.+|+..
T Consensus 469 ~-v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~--~~~l~~~~l~d-~v~~Ir~~aa~~ 541 (759)
T KOG0211|consen 469 D-VIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEK--LAELLRTWLPD-HVYSIREAAARN 541 (759)
T ss_pred C-cccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHH--HHHHHHhhhhh-hHHHHHHHHHHH
Confidence 1 122333444456666666666677777777766655553311 1111111 11111111111 223344444444
Q ss_pred HHHhcc--CChhhHHHHHHHh---------------------------hHhhhhhhHHHHHHhhccCChhHHHHHHHHHH
Q 009514 427 LGNVAT--GKESHKEAVMDQL---------------------------LLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL 477 (533)
Q Consensus 427 L~~l~~--~~~~~~~~~~~~~---------------------------~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~ 477 (533)
+..++. |.++.++.++... .+.+...++|.+.++..++.++||.+++..+.
T Consensus 542 l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~ 621 (759)
T KOG0211|consen 542 LPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLP 621 (759)
T ss_pred hHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHH
Confidence 333332 2222222111100 00112456777777778888888888888888
Q ss_pred hhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514 478 NLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 478 ~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~ 526 (533)
.+.. . -....++..+.|.+..+.+|++.+++.+|..|++.+.
T Consensus 622 ~i~~----~---L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 622 KILK----L---LDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIE 663 (759)
T ss_pred HHHh----h---cchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHH
Confidence 7774 1 1234556667788888888888888888888887764
No 58
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.92 E-value=1e-06 Score=87.00 Aligned_cols=452 Identities=15% Similarity=0.097 Sum_probs=239.4
Q ss_pred ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchh-HHHHHhcCchHHHHHhhc-----C---ChHHHHHHHHHHHHHhc
Q 009514 16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLE-QKLLFDAGVLKRLTSLLG-----G---SLIQRDASLESIATIFK 86 (533)
Q Consensus 16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~-~~~i~~~g~i~~L~~lL~-----~---~~~v~~~al~aL~~l~~ 86 (533)
...+..+.+.++++++........+...|...... .+.+++ .+.|.+.+-.- + +.++-..+-..++.+..
T Consensus 440 re~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~-~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g 518 (975)
T COG5181 440 REHMEIVFREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRD-QVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGG 518 (975)
T ss_pred HHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHH-hhcHHhhchHHHhhhcccccccceeehhHHHHHHHcC
Confidence 35677888888888887777666666666543322 222332 23333322211 1 11111122222333221
Q ss_pred CChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-C--chhhh
Q 009514 87 NNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-G--RVGDE 163 (533)
Q Consensus 87 ~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~--~~~~~ 163 (533)
....+..++.-.+++...-|..++.........-+....++...+..+..++..+++. . .+-..
T Consensus 519 -------------~~~v~~kil~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~ 585 (975)
T COG5181 519 -------------DPRVSRKILEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILP 585 (975)
T ss_pred -------------ChHHHHHHHhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEe
Confidence 1223455666666666555555554444433222111223344455555555555532 1 12112
Q ss_pred HHHHHH-hhh-cCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhh--hHhhhhhchHHHHHHhc
Q 009514 164 ASFAFS-SLI-AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC--RSRCLSLQVLKLVVDAL 239 (533)
Q Consensus 164 a~~~L~-~l~-~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~--~~~~~~~~~l~~l~~~L 239 (533)
+..+.. .+- ...+.. .-.+..++..|.+. +|.+|+.|+...+.++.--..+ .+.+...|. .|.+.|
T Consensus 586 ~f~tv~vsl~~r~kp~l------~~ivStiL~~L~~k--~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l 655 (975)
T COG5181 586 CFSTVLVSLEFRGKPHL------SMIVSTILKLLRSK--PPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL 655 (975)
T ss_pred cccceeeehhhccCcch------HHHHHHHHHHhcCC--CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc
Confidence 111111 000 011111 11234556667665 4789999998888776422111 122333333 366788
Q ss_pred CCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh---HHHHHHhCc
Q 009514 240 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR---RSTFIRLGG 316 (533)
Q Consensus 240 ~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~---~~~~~~~~~ 316 (533)
....+++.-...++++.+.....-.... -=..|++|.|..+|++...+++......++.++...++. ++.+. +
T Consensus 656 ge~ypEvLgsil~Ai~~I~sv~~~~~mq-pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---I 731 (975)
T COG5181 656 GEDYPEVLGSILKAICSIYSVHRFRSMQ-PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---I 731 (975)
T ss_pred CcccHHHHHHHHHHHHHHhhhhcccccC-CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---H
Confidence 8889988877777777775432211100 123589999999999999999999999998888765542 33222 2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 009514 317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396 (533)
Q Consensus 317 i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 396 (533)
-=.|+.++++.+.++|.+|..+++.++..-+|. ..+..|+.-|+..+... ..+..+. +..+
T Consensus 732 cfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq--------dvL~~LlnnLkvqeRq~--Rvctsva---------I~iV 792 (975)
T COG5181 732 CFELVDSLKSWNKEIRRNATETFGCISRAIGPQ--------DVLDILLNNLKVQERQQ--RVCTSVA---------ISIV 792 (975)
T ss_pred HHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH--------HHHHHHHhcchHHHHHh--hhhhhhh---------hhhh
Confidence 334677888899999999999999887655441 11223333333222222 2221111 1111
Q ss_pred HhhcCc--hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHH
Q 009514 397 FAEDGI--ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVW 474 (533)
Q Consensus 397 ~~~~~~--~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~ 474 (533)
-+..|. +++.|..--.. |+..||...+.+++.+...-.+.....+ +.+.|.+-..|.+.|+..|..|..
T Consensus 793 ae~cgpfsVlP~lm~dY~T-Pe~nVQnGvLkam~fmFeyig~~s~dYv--------y~itPlleDAltDrD~vhRqta~n 863 (975)
T COG5181 793 AEYCGPFSVLPTLMSDYET-PEANVQNGVLKAMCFMFEYIGQASLDYV--------YSITPLLEDALTDRDPVHRQTAMN 863 (975)
T ss_pred HhhcCchhhHHHHHhcccC-chhHHHHhHHHHHHHHHHHHHHHHHHHH--------HHhhHHHHhhhcccchHHHHHHHH
Confidence 122221 45555443444 6667888888888777642111122222 456688889999999999999999
Q ss_pred HHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 475 AVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 475 ~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
.|..++-+ +.|+.+--..+. .+-.|..-.-+++|-+..+..+.+..|+.
T Consensus 864 vI~Hl~Ln-c~gtg~eda~IH---LlNllwpNIle~sPhvi~~~~Eg~e~~~~ 912 (975)
T COG5181 864 VIRHLVLN-CPGTGDEDAAIH---LLNLLWPNILEPSPHVIQSFDEGMESFAT 912 (975)
T ss_pred HHHHHhcC-CCCcccHHHHHH---HHHHhhhhccCCCcHHHHHHHHHHHHHHH
Confidence 99999875 333321111110 01122222235677777666666665543
No 59
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=9.3e-06 Score=81.15 Aligned_cols=368 Identities=14% Similarity=0.107 Sum_probs=228.0
Q ss_pred hHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHH
Q 009514 71 LIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL 150 (533)
Q Consensus 71 ~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L 150 (533)
+.+|++.+.--+.++++-+..-. .....+..++.-+..+.+.+|.+...||..+....... -.....+.+
T Consensus 70 ~~~~~~~~v~~~~~a~~~~~~d~-----~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~-----~~~~~l~~l 139 (569)
T KOG1242|consen 70 DNLRNNVVVLEGTLAFHLQIVDP-----RPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL-----SGEYVLELL 139 (569)
T ss_pred HHHhhhhHHHHHHHHHhccccCc-----chhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc-----CHHHHHHHH
Confidence 45666665555555543222110 01234455566777788899999999999877654321 123567778
Q ss_pred HHhcCCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhh
Q 009514 151 LELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL 229 (533)
Q Consensus 151 ~~ll~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~ 229 (533)
.++++.. ..-+..+++.++.+..+..- ....+.+.+..+-+.+.+. .+...++.+..+.-..+.+-. ...+.
T Consensus 140 ~~ll~~~~~~~~~~aa~~~ag~v~g~~i--~~~~~~~~l~~l~~ai~dk-~~~~~re~~~~a~~~~~~~Lg----~~~EP 212 (569)
T KOG1242|consen 140 LELLTSTKIAERAGAAYGLAGLVNGLGI--ESLKEFGFLDNLSKAIIDK-KSALNREAALLAFEAAQGNLG----PPFEP 212 (569)
T ss_pred HHHhccccHHHHhhhhHHHHHHHcCcHH--hhhhhhhHHHHHHHHhccc-chhhcHHHHHHHHHHHHHhcC----CCCCc
Confidence 8888732 33466777888877766543 2233445566666656554 234455544444333332211 12222
Q ss_pred c---hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 009514 230 Q---VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT 306 (533)
Q Consensus 230 ~---~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~ 306 (533)
. .+|.++.-..+..+.||.+|..+...+-+..+.. .-..++|.++.-+.+..+..+..++..++.++..- +
T Consensus 213 yiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-----aVK~llpsll~~l~~~kWrtK~aslellg~m~~~a-p 286 (569)
T KOG1242|consen 213 YIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-----AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCA-P 286 (569)
T ss_pred hHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-----hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhc-h
Confidence 3 4555555556778899999999998886653321 22345677776666568889999999999888643 4
Q ss_pred hHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514 307 RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV 386 (533)
Q Consensus 307 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~ 386 (533)
..-......++|.+.+.+.+..+++|.++..++.+++.-.++ .+ + . ..++.++..+.+++.++.+..-.....-+
T Consensus 287 ~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN--~d-I-~-~~ip~Lld~l~dp~~~~~e~~~~L~~ttF 361 (569)
T KOG1242|consen 287 KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDN--PD-I-Q-KIIPTLLDALADPSCYTPECLDSLGATTF 361 (569)
T ss_pred HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhcc--HH-H-H-HHHHHHHHHhcCcccchHHHHHhhcceee
Confidence 343555578999999999999999999999999998753332 11 1 1 13677777777776444433222111110
Q ss_pred cCCcchHHHHHh-hcCchHHHHHHHhccCCchhHHHHHHHHHHHhccC--ChhhHHHHHHHhhHhhhhhhHHHHHHhhcc
Q 009514 387 DGRINSVEYIFA-EDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG--KESHKEAVMDQLLLRAENKAQSCIIKFLQS 463 (533)
Q Consensus 387 ~~~~~~~~~i~~-~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~ 463 (533)
+..+-. ....+++.|.+-+.. .+..++..++-++.|++.- ++.....++ ..++|.+-..+.+
T Consensus 362 ------V~~V~~psLalmvpiL~R~l~e-Rst~~kr~t~~IidNm~~LveDp~~lapfl--------~~Llp~lk~~~~d 426 (569)
T KOG1242|consen 362 ------VAEVDAPSLALMVPILKRGLAE-RSTSIKRKTAIIIDNMCKLVEDPKDLAPFL--------PSLLPGLKENLDD 426 (569)
T ss_pred ------eeeecchhHHHHHHHHHHHHhh-ccchhhhhHHHHHHHHHHhhcCHHHHhhhH--------HHHhhHHHHHhcC
Confidence 000000 001145556555555 6778889999999999873 333344444 3566777778888
Q ss_pred CChhHHHHHHHHHHhhcC
Q 009514 464 NDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 464 ~~~~v~~~a~~~L~~l~~ 481 (533)
+.+++|..++.+|+.+..
T Consensus 427 ~~PEvR~vaarAL~~l~e 444 (569)
T KOG1242|consen 427 AVPEVRAVAARALGALLE 444 (569)
T ss_pred CChhHHHHHHHHHHHHHH
Confidence 899999999999987774
No 60
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.89 E-value=7.6e-06 Score=84.83 Aligned_cols=426 Identities=14% Similarity=0.102 Sum_probs=222.4
Q ss_pred HHhhhc--CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcCChhhhhhhcccc
Q 009514 22 LLSLLN--NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPD 99 (533)
Q Consensus 22 L~~lL~--~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~ 99 (533)
-++.|. +.|..|+++|..+.+.+-..-..+....-...++.++.-|++ ...|-.|.+|+..++...-++-. ...
T Consensus 573 tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n-EiTRl~AvkAlt~Ia~S~l~i~l---~~~ 648 (1233)
T KOG1824|consen 573 TLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN-EITRLTAVKALTLIAMSPLDIDL---SPV 648 (1233)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-hhHHHHHHHHHHHHHhccceeeh---hhh
Confidence 344444 346788999988887643221111111112234444444444 45678888999888765433210 001
Q ss_pred CcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCCHHH
Q 009514 100 TGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDM 178 (533)
Q Consensus 100 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~~~~ 178 (533)
-...++.+...++-.....|.+...++-.+.......... -...-++..+-.++++. -.+-..|...|+.++...+..
T Consensus 649 l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~-~~~e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~ 727 (1233)
T KOG1824|consen 649 LTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPA-ELLEAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSS 727 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHH
Confidence 1346666776666544455555555555554433221121 12233455555556543 345566777777776665543
Q ss_pred HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhh---ch-HHHHHHhcCCCC---------HH
Q 009514 179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL---QV-LKLVVDALAHDS---------SD 245 (533)
Q Consensus 179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~---~~-l~~l~~~L~~~~---------~~ 245 (533)
- ..+..-.++.++.+++++- ++-.++.++..+- ..++.. +. ...++.++..+- ..
T Consensus 728 l-~~~~~~iL~~ii~ll~Spl----lqg~al~~~l~~f-------~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kq 795 (1233)
T KOG1824|consen 728 L-LKISNPILDEIIRLLRSPL----LQGGALSALLLFF-------QALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQ 795 (1233)
T ss_pred H-HHHhhhhHHHHHHHhhCcc----ccchHHHHHHHHH-------HHHHhcCCCCccHHHHHHHHcCCcccccccchhHH
Confidence 2 2223345688888777653 3333433332221 111111 11 444555555331 12
Q ss_pred HHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHh
Q 009514 246 VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL 323 (533)
Q Consensus 246 v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~l 323 (533)
.-...+.|...++...+... ......|++=+. ..+..++..|.-.++.+-.+....- ..+.-..+++.
T Consensus 796 a~~siA~cvA~Lt~~~~~~s------~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iiea 865 (1233)
T KOG1824|consen 796 AYYSIAKCVAALTCACPQKS------KSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEA 865 (1233)
T ss_pred HHHHHHHHHHHHHHhccccc------hhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHH
Confidence 23344555555555433211 122334444333 4467788888888888876443221 12223356688
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhh---------cHHHHHhhhCCCC----hhHHHHHHHHHHHhhcCCc
Q 009514 324 SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL---------TASLLASLICDPE----PSVQEQALALVRNLVDGRI 390 (533)
Q Consensus 324 l~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~---------~~~~l~~lL~~~~----~~v~~~a~~~L~~l~~~~~ 390 (533)
+++++.+++.+|..||++++.+.-+..-..+.+.. .+-.+.+.+...+ ....+..-..|.+-|.+..
T Consensus 866 f~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~e 945 (1233)
T KOG1824|consen 866 FNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAE 945 (1233)
T ss_pred cCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccch
Confidence 88999999999999999998765444333333221 1112222222111 1112222223333333333
Q ss_pred chHHHHHhh-cC--------chHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 009514 391 NSVEYIFAE-DG--------IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL 461 (533)
Q Consensus 391 ~~~~~i~~~-~~--------~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L 461 (533)
+....++.+ .| .+++.|...+.+ +.+..+..+..+.-......+...+.++. ..+..+..++
T Consensus 946 egtR~vvAECLGkL~l~epesLlpkL~~~~~S-~a~~~rs~vvsavKfsisd~p~~id~~lk--------~~ig~fl~~~ 1016 (1233)
T KOG1824|consen 946 EGTRNVVAECLGKLVLIEPESLLPKLKLLLRS-EASNTRSSVVSAVKFSISDQPQPIDPLLK--------QQIGDFLKLL 1016 (1233)
T ss_pred hhhHHHHHHHhhhHHhCChHHHHHHHHHHhcC-CCcchhhhhhheeeeeecCCCCccCHHHH--------HHHHHHHHHH
Confidence 333333222 12 156777666666 77777777766665444444445555553 3446777888
Q ss_pred ccCChhHHHHHHHHHHhhcCCC
Q 009514 462 QSNDSRLRTAAVWAVLNLTCSS 483 (533)
Q Consensus 462 ~~~~~~v~~~a~~~L~~l~~~~ 483 (533)
+++|.+||..|..++...+.++
T Consensus 1017 ~dpDl~VrrvaLvv~nSaahNK 1038 (1233)
T KOG1824|consen 1017 RDPDLEVRRVALVVLNSAAHNK 1038 (1233)
T ss_pred hCCchhHHHHHHHHHHHHHccC
Confidence 9999999999999999999743
No 61
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.89 E-value=4.8e-06 Score=84.03 Aligned_cols=462 Identities=13% Similarity=0.100 Sum_probs=254.3
Q ss_pred chHHHHhhhcCCCcchhHHHHHHHHHhhcCch-hHHHHHhcCchHHHHHhh-cC----ChHHHHHHHHHHHHHhcCChhh
Q 009514 18 NMEFLLSLLNNESENVSGLGASIISHSCKTSL-EQKLLFDAGVLKRLTSLL-GG----SLIQRDASLESIATIFKNNPEV 91 (533)
Q Consensus 18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~-~~~~i~~~g~i~~L~~lL-~~----~~~v~~~al~aL~~l~~~~~~~ 91 (533)
.+..+=+.|.+++..|+.-++.+++.++.... ... +....++..| ++ .-+.....++|++.++...+..
T Consensus 554 lv~ii~~gl~De~qkVR~itAlalsalaeaa~Pygi-----e~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~e 628 (1172)
T KOG0213|consen 554 LVKIIEHGLKDEQQKVRTITALALSALAEAATPYGI-----EQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAE 628 (1172)
T ss_pred HHHHHHHhhcccchhhhhHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHH
Confidence 34555566667788888888888887774211 111 1122222222 22 2245567788999988554332
Q ss_pred -hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC------CC---Cchh
Q 009514 92 -VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD------DP---GRVG 161 (533)
Q Consensus 92 -~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~------~~---~~~~ 161 (533)
...+ .......+++-+.++|.+.+.-.++.+...+.... .....+....+|.++...- +. ..+-
T Consensus 629 ya~yy----Trevmlil~rEf~sPDeemkkivLKVv~qcc~t~G--v~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv 702 (1172)
T KOG0213|consen 629 YASYY----TREVMLILIREFGSPDEEMKKIVLKVVKQCCATDG--VEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLV 702 (1172)
T ss_pred HHHHh----HHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccC--CCHHHHhhhhhHHHHhhhhhhhhhccccchhhHH
Confidence 2111 12334445666778888888877777777665543 2344566777887776552 11 1111
Q ss_pred hhHH-------------HHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHH-hhccchhh-----
Q 009514 162 DEAS-------------FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALAD-MCSKLECC----- 222 (533)
Q Consensus 162 ~~a~-------------~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~-l~~~~~~~----- 222 (533)
..+. ..+..+-.+.+..++. ..+.+.+++..|.....+...-+.-+..+.+ +...+.+.
T Consensus 703 ~ttv~ia~KvG~~~~v~R~v~~lkde~e~yrkm--~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~ 780 (1172)
T KOG0213|consen 703 DTTVEIAAKVGSDPIVSRVVLDLKDEPEQYRKM--VAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLL 780 (1172)
T ss_pred HHHHHHHHHhCchHHHHHHhhhhccccHHHHHH--HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhh
Confidence 1111 1111221222222221 1234555555444333233222222222221 11111000
Q ss_pred -----hHhhhh------hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcH-HHHHHhhcCCCHHHH
Q 009514 223 -----RSRCLS------LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV-IPLVRLLDDTSTAVQ 290 (533)
Q Consensus 223 -----~~~~~~------~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i-~~Lv~lL~~~~~~v~ 290 (533)
.+.+.. ..++..++..|+++++.+|++|+..+..++...+.-... ...|.+ -.|.+.|..+.+++.
T Consensus 781 gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee--~~m~~lGvvLyEylgeeypEvL 858 (1172)
T KOG0213|consen 781 GFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEE--KLMGHLGVVLYEYLGEEYPEVL 858 (1172)
T ss_pred hHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHH--HHHHHhhHHHHHhcCcccHHHH
Confidence 011111 124455666788999999999999999987542221111 111222 247778888999999
Q ss_pred HHHHHHHHHHhcCCchhH-HHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh--HHHHHHhhcHHHHHhhh
Q 009514 291 VAALGAISNIVVDFTTRR-STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC--KEEIFMELTASLLASLI 367 (533)
Q Consensus 291 ~~a~~aL~nl~~~~~~~~-~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~--~~~i~~~~~~~~l~~lL 367 (533)
...+.||..+.....-.+ ...+ .+.+|.|...|++.+..++.+++..++.++...+... |+.+.= ---|+++|
T Consensus 859 gsILgAikaI~nvigm~km~pPi-~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRI---cfeLlelL 934 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMTKMTPPI-KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRI---CFELLELL 934 (1172)
T ss_pred HHHHHHHHHHHHhccccccCCCh-hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHH
Confidence 988888877764221111 0111 4789999999999999999999999999987554321 222211 22467788
Q ss_pred CCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhH
Q 009514 368 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL 447 (533)
Q Consensus 368 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 447 (533)
.+.+.+++..+...++.++..-. ... ++..|...|.. .+-+-+....-+|+-.+..+.
T Consensus 935 kahkK~iRRaa~nTfG~IakaIG-------Pqd--VLatLlnnLkv-qeRq~RvcTtvaIaIVaE~c~------------ 992 (1172)
T KOG0213|consen 935 KAHKKEIRRAAVNTFGYIAKAIG-------PQD--VLATLLNNLKV-QERQNRVCTTVAIAIVAETCG------------ 992 (1172)
T ss_pred HHHHHHHHHHHHhhhhHHHHhcC-------HHH--HHHHHHhcchH-HHHHhchhhhhhhhhhhhhcC------------
Confidence 88899999999999999885421 001 44555444433 111222222223322222110
Q ss_pred hhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 448 RAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 448 ~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
...++|.|.+=-+.++.+|+.....+++.+-.--...+.+.+- .+.|.|.+-+.|.++--+.-|..++.+++=
T Consensus 993 --pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy-----av~PlleDAlmDrD~vhRqta~~~I~Hl~L 1065 (1172)
T KOG0213|consen 993 --PFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY-----AVTPLLEDALMDRDLVHRQTAMNVIKHLAL 1065 (1172)
T ss_pred --chhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH-----HhhHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 1456688888778899999998888887665200011111111 245777777777777666668888887753
No 62
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=4e-06 Score=85.23 Aligned_cols=329 Identities=17% Similarity=0.121 Sum_probs=200.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCCHHHHHHHHH
Q 009514 106 CIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFE 184 (533)
Q Consensus 106 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~ 184 (533)
++-+...++.+.||..|+.++-.++...++. + ...+..+-.||.|. +-+--.|..+.....-+.-+ .-
T Consensus 147 AIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~-k-----~qL~e~I~~LLaD~splVvgsAv~AF~evCPerld-----LI 215 (968)
T KOG1060|consen 147 AIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQ-K-----DQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLD-----LI 215 (968)
T ss_pred HHHHHhcCCcHHHHHHHHHhhHHHhcCChhh-H-----HHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHH-----Hh
Confidence 3445778899999999999999999876542 1 24566666777764 44444555555544433222 12
Q ss_pred cCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhcc---chhh---------------------hHhhhhhc----hHHHHH
Q 009514 185 VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK---LECC---------------------RSRCLSLQ----VLKLVV 236 (533)
Q Consensus 185 ~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~---~~~~---------------------~~~~~~~~----~l~~l~ 236 (533)
++-..+++++|.+- .+|. +...+..|...|.. +|.. +.-..... .+...-
T Consensus 216 HknyrklC~ll~dv-deWg-QvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stk 293 (968)
T KOG1060|consen 216 HKNYRKLCRLLPDV-DEWG-QVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTK 293 (968)
T ss_pred hHHHHHHHhhccch-hhhh-HHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhcc
Confidence 34466777777654 2343 33344444444331 1100 00001011 233344
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH----H---
Q 009514 237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR----S--- 309 (533)
Q Consensus 237 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~----~--- 309 (533)
.+|.+.++.|..+++.+.+.++-.. ...+++++|+.+|++ +.++|+..+..|..++...+... +
T Consensus 294 pLl~S~n~sVVmA~aql~y~lAP~~--------~~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFf 364 (968)
T KOG1060|consen 294 PLLQSRNPSVVMAVAQLFYHLAPKN--------QVTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFF 364 (968)
T ss_pred HHHhcCCcHHHHHHHhHHHhhCCHH--------HHHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceE
Confidence 4667889999999999999997541 234678899998874 45666666666666554322110 0
Q ss_pred ---------H---------HHHhC----cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhh
Q 009514 310 ---------T---------FIRLG----GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI 367 (533)
Q Consensus 310 ---------~---------~~~~~----~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL 367 (533)
. +..+. +++.+-.+.++.+..+...++.+++.++.... -+....+..|+.++
T Consensus 365 v~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~------sv~~tCL~gLv~Ll 438 (968)
T KOG1060|consen 365 VRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG------SVTDTCLNGLVQLL 438 (968)
T ss_pred eecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC------chhhHHHHHHHHHH
Confidence 0 11112 23333344556665677777777777654221 13345678899999
Q ss_pred CCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhH
Q 009514 368 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL 447 (533)
Q Consensus 368 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 447 (533)
++.+..|...++..++.|...+|..-.. ++..|.+++.+..-+.-+...+|.++..+.. ...+.
T Consensus 439 sshde~Vv~eaV~vIk~Llq~~p~~h~~-------ii~~La~lldti~vp~ARA~IiWLige~~e~----vpri~----- 502 (968)
T KOG1060|consen 439 SSHDELVVAEAVVVIKRLLQKDPAEHLE-------ILFQLARLLDTILVPAARAGIIWLIGEYCEI----VPRIA----- 502 (968)
T ss_pred hcccchhHHHHHHHHHHHHhhChHHHHH-------HHHHHHHHhhhhhhhhhhceeeeeehhhhhh----cchhc-----
Confidence 9999999999999999999887643221 5566667776645567777788888766542 22222
Q ss_pred hhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 448 RAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 448 ~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
.+++..+++-+.+....+|.+.......+--
T Consensus 503 ---PDVLR~laksFs~E~~evKlQILnL~aKLyl 533 (968)
T KOG1060|consen 503 ---PDVLRKLAKSFSDEGDEVKLQILNLSAKLYL 533 (968)
T ss_pred ---hHHHHHHHHhhccccchhhHHHHHhhhhheE
Confidence 3566777777888888888888777766654
No 63
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=1.8e-07 Score=87.50 Aligned_cols=187 Identities=16% Similarity=0.089 Sum_probs=149.4
Q ss_pred CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHH
Q 009514 114 RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY 192 (533)
Q Consensus 114 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 192 (533)
.++.-+..|..-|..+...-++ ...+...|+.++++..+.+ +..+|..|+++++..+.+++..+..+++.|++++|+
T Consensus 95 ~~le~ke~ald~Le~lve~iDn--Andl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDN--ANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhh--HHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 4556677777777777765543 3346777888888888884 578999999999999999999999999999999999
Q ss_pred HhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC--CCHHHHHHHHHHHHHHhhccccccchhhh
Q 009514 193 NHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH--DSSDVRSAACMCLRSVSRSIKNLSAGSFM 270 (533)
Q Consensus 193 ~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~--~~~~v~~~a~~~L~~ls~~~~~~~~~~~~ 270 (533)
..|..+ .+...+..|+.|++++-.+.+.....+...++...|...+++ .+..++..++..+..+.......+.. +-
T Consensus 173 ~~ls~~-~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~-~~ 250 (342)
T KOG2160|consen 173 KILSSD-DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDI-AS 250 (342)
T ss_pred HHHccC-CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhH-HH
Confidence 988855 456788999999999999988888889999999999999998 56788889999999987663333322 34
Q ss_pred hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 009514 271 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF 304 (533)
Q Consensus 271 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 304 (533)
..++...++.+....+.++.+.+..++..+....
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~ 284 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLSEL 284 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHH
Confidence 5566666777777778889999988887776543
No 64
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.84 E-value=1e-05 Score=83.99 Aligned_cols=480 Identities=15% Similarity=0.172 Sum_probs=260.8
Q ss_pred cccchHHHHhhhcCCCcchhHHHHHHHHHhhcC-chhH-HHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcCChhhh
Q 009514 15 QEENMEFLLSLLNNESENVSGLGASIISHSCKT-SLEQ-KLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVV 92 (533)
Q Consensus 15 ~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~-~~~~-~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~ 92 (533)
+..++..|+++|++.+.+||..|+++++-+++. .+++ +.+++. ..-.++.+-.+.|.-+--.|..+..+-+...
T Consensus 45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~----L~~~~~s~keq~rdissi~Lktvi~nl~P~~ 120 (1233)
T KOG1824|consen 45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVEN----LCSNMLSGKEQLRDISSIGLKTVIANLPPSS 120 (1233)
T ss_pred hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHH----HhhhhccchhhhccHHHHHHHHHHhcCCCcc
Confidence 356889999999999999999999999987743 2222 122221 2222344444455544444444332222111
Q ss_pred hhhccccCcccHHHHHHHHh------cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHH
Q 009514 93 SQFVGPDTGRTLSCIIEIVK------DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEAS 165 (533)
Q Consensus 93 ~~~~~~~~~~~i~~l~~ll~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~ 165 (533)
..+. .....+.+...++ .+...++..++..+..+...-.. ... ....+.+..++.-+..+ ..++.+++
T Consensus 121 ~~~l---a~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~-ll~-~fh~~il~~l~~ql~s~R~aVrKkai 195 (1233)
T KOG1824|consen 121 SSFL---AATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGT-LLP-NFHLSILKCLLPQLQSPRLAVRKKAI 195 (1233)
T ss_pred cccc---ccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcc-cCc-chHHHHHHHHhhcccChHHHHHHHHH
Confidence 1111 1234444444332 23334777776666654322111 111 12345555555555533 46789999
Q ss_pred HHHHhhhcCCHH-HHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh--hchHHHHHHhc---
Q 009514 166 FAFSSLIAEKED-MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS--LQVLKLVVDAL--- 239 (533)
Q Consensus 166 ~~L~~l~~~~~~-~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~--~~~l~~l~~~L--- 239 (533)
.+|+.++..... ... +.+..|.+-|.++.. +......+.+|+.++... ...+-. ...+|.+.++.
T Consensus 196 ~~l~~la~~~~~~ly~-----~li~~Ll~~L~~~~q-~~~~rt~Iq~l~~i~r~a---g~r~~~h~~~ivp~v~~y~~~~ 266 (1233)
T KOG1824|consen 196 TALGHLASSCNRDLYV-----ELIEHLLKGLSNRTQ-MSATRTYIQCLAAICRQA---GHRFGSHLDKIVPLVADYCNKI 266 (1233)
T ss_pred HHHHHHHHhcCHHHHH-----HHHHHHHhccCCCCc-hHHHHHHHHHHHHHHHHh---cchhhcccchhhHHHHHHhccc
Confidence 999999854432 111 334556666665532 222233445566665421 112222 24789999998
Q ss_pred CCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CC---------------------------------
Q 009514 240 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DT--------------------------------- 285 (533)
Q Consensus 240 ~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~--------------------------------- 285 (533)
+..+.++|+....++..+-+.++..--. ....++..+++.+. +|
T Consensus 267 e~~dDELrE~~lQale~fl~rcp~ei~p--~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~ 344 (1233)
T KOG1824|consen 267 EEDDDELREYCLQALESFLRRCPKEILP--HVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDM 344 (1233)
T ss_pred ccCcHHHHHHHHHHHHHHHHhChhhhcc--cchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccch
Confidence 6778899999999998876543321000 11122222222221 11
Q ss_pred CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh--------HhHH-----
Q 009514 286 STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED--------KCKE----- 352 (533)
Q Consensus 286 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~--------~~~~----- 352 (533)
++.||.+|+.++..+.....+.-..+.+ ..-|.++.-.+...+.++.....+...+..+..+ +..+
T Consensus 345 SWkVRRaAaKcl~a~IsSR~E~L~~~~q-~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~ 423 (1233)
T KOG1824|consen 345 SWKVRRAAAKCLEAVISSRLEMLPDFYQ-TLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTP 423 (1233)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCc
Confidence 2589999999998887655554444443 3447777777777777777777776666543221 1111
Q ss_pred ----HHHHh--hcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccC-CchhHHHHHHH
Q 009514 353 ----EIFME--LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMY 425 (533)
Q Consensus 353 ----~i~~~--~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~-~~~~v~~~a~~ 425 (533)
.+.+. ..+..+.+.+++.+.+.+..++..|+.+....|+.. .++.+.+++-+...|.+- .....+..++.
T Consensus 424 s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l---~~~~~slvpgI~~~l~DkSsss~~ki~~L~ 500 (1233)
T KOG1824|consen 424 SDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGAL---AQHIPSLVPGIIYSLNDKSSSSNLKIDALV 500 (1233)
T ss_pred cchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchh---hhcccccchhhhhhcCCccchHHHHHHHHH
Confidence 11111 134455556666777777788888888876655422 122222555555556542 23445555555
Q ss_pred HHHHh-ccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC---CCCC----CcHHHHHHHHHC
Q 009514 426 VLGNV-ATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC---SSSP----GSSGRLVKLHDA 497 (533)
Q Consensus 426 ~L~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~---~~~~----~~~~~~~~l~~~ 497 (533)
.+.+. ....++..+..+ .-..|.++....++-+.+-.+|......+.. +... +.......+.
T Consensus 501 fl~~~L~s~~p~~fhp~~--------~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~-- 570 (1233)
T KOG1824|consen 501 FLYSALISHPPEVFHPHL--------SALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMY-- 570 (1233)
T ss_pred HHHHHHhcCChhhcccch--------hhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHH--
Confidence 55444 444443333333 3455677777777878888887777666652 2111 1122222222
Q ss_pred CcHHHHHhhh-cCCCCcHHHHHHHHHHHH-hhhcc
Q 009514 498 GIVSHVKNMV-NDPCLDVKLRVKTALEQF-NSFDD 530 (533)
Q Consensus 498 g~~~~L~~ll-~~~~~~v~~~a~~aL~~~-~~~~~ 530 (533)
--.+.++- +|.+.+||++|..+.+++ ..|+|
T Consensus 571 --~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD 603 (1233)
T KOG1824|consen 571 --DCTLQRLKATDSDQEVKERAISCMGQIIANFGD 603 (1233)
T ss_pred --HHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh
Confidence 12344443 567889999999998877 44444
No 65
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.83 E-value=1.8e-06 Score=85.37 Aligned_cols=242 Identities=18% Similarity=0.088 Sum_probs=166.6
Q ss_pred CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccccc
Q 009514 186 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 265 (533)
Q Consensus 186 ~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~ 265 (533)
.+++.++..|... .++.++..++.++.. .+++. .+..+++.|.+.++.|+..++.+|+.+
T Consensus 54 ~a~~~L~~aL~~d-~~~ev~~~aa~al~~--~~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i-------- 113 (410)
T TIGR02270 54 AATELLVSALAEA-DEPGRVACAALALLA--QEDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWL-------- 113 (410)
T ss_pred hHHHHHHHHHhhC-CChhHHHHHHHHHhc--cCChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcC--------
Confidence 3467788877543 235555555444432 12211 378899999999999999999998543
Q ss_pred chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 009514 266 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL 345 (533)
Q Consensus 266 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~ 345 (533)
...+..+.|..+|+++++.++..++.+++..- ....+.+..+++++++.++..|+++|+.+-..
T Consensus 114 ----~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 114 ----GGRQAEPWLEPLLAASEPPGRAIGLAALGAHR------------HDPGPALEAALTHEDALVRAAALRALGELPRR 177 (410)
T ss_pred ----CchHHHHHHHHHhcCCChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc
Confidence 34466788999999999999999998886622 23456788889999999999999999988542
Q ss_pred CChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHH
Q 009514 346 AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMY 425 (533)
Q Consensus 346 ~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~ 425 (533)
. ..+.|...+.+.++.|+..|++.+..+-. +. .+..+...... +..........
T Consensus 178 ~------------a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~-----------A~~~l~~~~~~-~g~~~~~~l~~ 231 (410)
T TIGR02270 178 L------------SESTLRLYLRDSDPEVRFAALEAGLLAGS--RL-----------AWGVCRRFQVL-EGGPHRQRLLV 231 (410)
T ss_pred c------------chHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh-----------HHHHHHHHHhc-cCccHHHHHHH
Confidence 1 35667778999999999999999977643 22 33333332222 23333333333
Q ss_pred HHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHh
Q 009514 426 VLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN 505 (533)
Q Consensus 426 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ 505 (533)
++... +. ...++.|..++++++ ++..++++++.+.. -..++.|++
T Consensus 232 ~lal~--~~----------------~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~---------------p~av~~L~~ 276 (410)
T TIGR02270 232 LLAVA--GG----------------PDAQAWLRELLQAAA--TRREALRAVGLVGD---------------VEAAPWCLE 276 (410)
T ss_pred HHHhC--Cc----------------hhHHHHHHHHhcChh--hHHHHHHHHHHcCC---------------cchHHHHHH
Confidence 33322 22 123467888888765 89999999998884 235788999
Q ss_pred hhcCCCCcHHHHHHHHHHHHh
Q 009514 506 MVNDPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 506 ll~~~~~~v~~~a~~aL~~~~ 526 (533)
.+++ +.+++.|.+++..|.
T Consensus 277 ~l~d--~~~aR~A~eA~~~It 295 (410)
T TIGR02270 277 AMRE--PPWARLAGEAFSLIT 295 (410)
T ss_pred HhcC--cHHHHHHHHHHHHhh
Confidence 8874 348889999998874
No 66
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=1.8e-05 Score=80.69 Aligned_cols=334 Identities=12% Similarity=0.138 Sum_probs=231.6
Q ss_pred ccHHHHHHHHh-cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-C--CCchhhhHHHHHHhhhcCCH-
Q 009514 102 RTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-D--PGRVGDEASFAFSSLIAEKE- 176 (533)
Q Consensus 102 ~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~--~~~~~~~a~~~L~~l~~~~~- 176 (533)
..|+.++.-.. +.-++-|..|++.|..+++. .+. .+...++++|++.|. | ++++...+...+.++...++
T Consensus 22 ETI~kLcDRvessTL~eDRR~A~rgLKa~srk----YR~-~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK----YRE-EVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred hHHHHHHHHHhhccchhhHHHHHHHHHHHHHH----HHH-HHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 45666666544 34567799999999999883 343 345567899999998 3 35666777777777765442
Q ss_pred -------H----HH----HHHH-HcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhcc-chhhhHhhhhh-chHHHHHHh
Q 009514 177 -------D----MQ----KLAF-EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-LECCRSRCLSL-QVLKLVVDA 238 (533)
Q Consensus 177 -------~----~~----~~~~-~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~-~~l~~l~~~ 238 (533)
. .. ..++ ..+-+..++..+... +-.+|.+++..|.++... ..+.++.+... .++..++.+
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 1 11 1122 245677788877654 467899999999988764 34566666554 589999999
Q ss_pred cCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCCchhHHHHHHh
Q 009514 239 LAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT----STAVQVAALGAISNIVVDFTTRRSTFIRL 314 (533)
Q Consensus 239 L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~~~~~ 314 (533)
|.+....+|-.+.-.|..+++..+...+- +.-+.+.+.|+.+++.+ .--|...|...|-||..++..++..+.+.
T Consensus 175 L~DsrE~IRNe~iLlL~eL~k~n~~IQKl-VAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~ 253 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELVKDNSSIQKL-VAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG 253 (970)
T ss_pred HhhhhhhhchhHHHHHHHHHccCchHHHH-HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc
Confidence 99999999999999999999986666554 45577888999999632 33678899999999999988999999999
Q ss_pred CcHHHHHHhhcC---CC--------HHH--HHHHHHHHHHhhccCCh-----HhHHHHHHhhcHHHHHhhhCCC--ChhH
Q 009514 315 GGVKLLVQLSKS---MD--------STI--RLNALRALRNLIFLAED-----KCKEEIFMELTASLLASLICDP--EPSV 374 (533)
Q Consensus 315 ~~i~~L~~ll~~---~~--------~~~--~~~al~aL~~l~~~~~~-----~~~~~i~~~~~~~~l~~lL~~~--~~~v 374 (533)
+-||.|.+++.- .+ ..+ ...++.++..++....+ .++..+...+++..|..++.++ ..+|
T Consensus 254 ~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dI 333 (970)
T KOG0946|consen 254 SYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADI 333 (970)
T ss_pred ccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhH
Confidence 999999988753 12 111 22355555665542211 2445677788899999988876 4689
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHhh----cC----chHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHH
Q 009514 375 QEQALALVRNLVDGRINSVEYIFAE----DG----IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMD 443 (533)
Q Consensus 375 ~~~a~~~L~~l~~~~~~~~~~i~~~----~~----~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 443 (533)
+..++.+++++..++......+.+. .. .++-.+..+..+......+.++++++-.+...+.+....++.
T Consensus 334 ltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~~l~ 410 (970)
T KOG0946|consen 334 LTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRKFLK 410 (970)
T ss_pred HHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 9999999999998865433333221 11 133334444444345678888889888887766554444444
No 67
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.81 E-value=3.9e-05 Score=75.60 Aligned_cols=402 Identities=15% Similarity=0.143 Sum_probs=195.3
Q ss_pred HHHHhhcC--ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHH-HHHhcCChhhHHHHHHHHHHhhhcCCCcch
Q 009514 62 RLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCII-EIVKDRFARTRLLASLCLIVIRNASPCYLQ 138 (533)
Q Consensus 62 ~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 138 (533)
.++.-+.+ ++.++-.|++.|..+...+... .+..++ ..+-++.+.++.+|+..-+.+...+....+
T Consensus 105 siMkD~~~g~~~~~kp~AiRsL~~Vid~~tv~-----------~~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~ 173 (898)
T COG5240 105 SIMKDLNGGVPDDVKPMAIRSLFSVIDGETVY-----------DFERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTK 173 (898)
T ss_pred HHHHhhccCCccccccHHHHHHHHhcCcchhh-----------hHHHHhhhhccccchhhhhhHHHHhhhhccccHHHHH
Confidence 44444543 3477888888887765432111 111121 133356666777776666666554321110
Q ss_pred hhh-hHhhhHHHHHHh------cC-CC---CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHH-
Q 009514 139 DVG-IKTKLINNLLEL------LD-DP---GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFE- 206 (533)
Q Consensus 139 ~~~-~~~~~i~~L~~l------l~-~~---~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~- 206 (533)
... -.+.++--+-+. .+ .+ +-.+..|.+.|..+-..+.- +.-++++.+..+. .-.-+.
T Consensus 174 rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkm---------a~lklv~hf~~n~-smknq~a 243 (898)
T COG5240 174 RWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKM---------AQLKLVEHFRGNA-SMKNQLA 243 (898)
T ss_pred HHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHH---------HHHHHHHHhhccc-ccccchh
Confidence 000 001111111111 11 11 12367788888776544322 2345666565442 111111
Q ss_pred --HHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC
Q 009514 207 --GILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD 284 (533)
Q Consensus 207 --~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~ 284 (533)
..+++...+...++..+. ...|.|-..+++....|...++++++.++.. +.... ++ ...+..|-.+|.+
T Consensus 244 ~V~lvr~~~~ll~~n~q~~~-----q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~--nv~~~-~~-~~~vs~L~~fL~s 314 (898)
T COG5240 244 GVLLVRATVELLKENSQALL-----QLRPFLNSWLSDKFEMVFLEAARAVCALSEE--NVGSQ-FV-DQTVSSLRTFLKS 314 (898)
T ss_pred heehHHHHHHHHHhChHHHH-----HHHHHHHHHhcCcchhhhHHHHHHHHHHHHh--ccCHH-HH-HHHHHHHHHHHhc
Confidence 223333444333333322 3567777788888899999999999998764 22212 22 2455667777888
Q ss_pred CCHHHHHHHHHHHHHHhcCCchhH-------HHH----------------HHhC---cHHHHH----HhhcCCCHHHHHH
Q 009514 285 TSTAVQVAALGAISNIVVDFTTRR-------STF----------------IRLG---GVKLLV----QLSKSMDSTIRLN 334 (533)
Q Consensus 285 ~~~~v~~~a~~aL~nl~~~~~~~~-------~~~----------------~~~~---~i~~L~----~ll~~~~~~~~~~ 334 (533)
+....|-+|...|..++..++... +.+ ++.| -+..|+ .++++-++..+.-
T Consensus 315 ~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI 394 (898)
T COG5240 315 TRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKII 394 (898)
T ss_pred chHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEE
Confidence 889999999999999987554311 111 1111 111111 1112212222222
Q ss_pred HHHHHHHhhccCChHhHHHHHHhhcHHHHHhhh-CCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 009514 335 ALRALRNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI 413 (533)
Q Consensus 335 al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~ 413 (533)
++.++..|+..-+. -+. ..+..|...| +.+..+.+..++.++..+....|+..+. +++.|...+.+
T Consensus 395 ~ida~rsLsl~Fp~-k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-------aLe~LC~fIED 461 (898)
T COG5240 395 AIDALRSLSLLFPS-KKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-------ALEVLCTFIED 461 (898)
T ss_pred eHHHHHHHHhhCcH-HHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-------HHHHHHHHHhh
Confidence 22222222221110 000 0112222211 2233444444444444444444432222 22333333333
Q ss_pred CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHH
Q 009514 414 ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK 493 (533)
Q Consensus 414 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 493 (533)
+.-+++....+.+|+.=.-..+.. ..++.++.+-+--.+..+|.+|+.||+.++.+..+...
T Consensus 462 cey~~I~vrIL~iLG~EgP~a~~P-------------~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~----- 523 (898)
T COG5240 462 CEYHQITVRILGILGREGPRAKTP-------------GKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS----- 523 (898)
T ss_pred cchhHHHHHHHHHhcccCCCCCCc-------------chHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc-----
Confidence 222333333333332211100000 12334444444446778999999999999975433322
Q ss_pred HHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514 494 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 494 l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~ 526 (533)
-..+...|.+.++|.+.+||++|..+|.++.
T Consensus 524 --~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 524 --PQSVENALKRCLNDQDDEVRDRASFLLRNMR 554 (898)
T ss_pred --HHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence 2234557888899999999999999999886
No 68
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=1.2e-05 Score=84.63 Aligned_cols=232 Identities=17% Similarity=0.153 Sum_probs=143.4
Q ss_pred cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCC-chhhhHHHHHHhhhcCCHHHH
Q 009514 101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG-RVGDEASFAFSSLIAEKEDMQ 179 (533)
Q Consensus 101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~a~~~L~~l~~~~~~~~ 179 (533)
...++.+..+..+....||.+|...+..+....... + -......+.+++..++.. .++.........+...-..
T Consensus 275 s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~--~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~-- 349 (759)
T KOG0211|consen 275 SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDD--D-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP-- 349 (759)
T ss_pred hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCc--h-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--
Confidence 345666777888888899999999999887754321 1 344567888888887653 3444444333333211110
Q ss_pred HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhcc-chhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009514 180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS 258 (533)
Q Consensus 180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls 258 (533)
....-...++...++... .++.+..+..-...++.. +.+.+..+.....+|.+-.+..+.+..++.+.+..+..++
T Consensus 350 -~~~~~~~~~~~~~l~~~~--~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~ 426 (759)
T KOG0211|consen 350 -SATRTQLVPPVSNLLKDE--EWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLS 426 (759)
T ss_pred -ccCcccchhhHHHHhcch--hhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccC
Confidence 000112245555545443 244444444433344332 1223344555667898888889999999998888877775
Q ss_pred hccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514 259 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA 338 (533)
Q Consensus 259 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~a 338 (533)
-..+..+ .-....|.+...+++.+++|+....+.+..+-...+..-........++.+..+.......+|.+.++.
T Consensus 427 p~~~k~~----ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ 502 (759)
T KOG0211|consen 427 PILPKER----TISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEY 502 (759)
T ss_pred ccCCcCc----CccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHH
Confidence 4433211 224567778888999999999999988766654443333344555667777777776667778877777
Q ss_pred HHHhhc
Q 009514 339 LRNLIF 344 (533)
Q Consensus 339 L~~l~~ 344 (533)
+-.++.
T Consensus 503 ip~la~ 508 (759)
T KOG0211|consen 503 IPQLAL 508 (759)
T ss_pred HHHHHH
Confidence 766654
No 69
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.73 E-value=1.3e-05 Score=76.26 Aligned_cols=279 Identities=15% Similarity=0.156 Sum_probs=184.6
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhc-hHHHHHHhcCC-CCHHHHHHHHHHHHHHhhcccccc
Q 009514 188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ-VLKLVVDALAH-DSSDVRSAACMCLRSVSRSIKNLS 265 (533)
Q Consensus 188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~-~l~~l~~~L~~-~~~~v~~~a~~~L~~ls~~~~~~~ 265 (533)
-+.++.+|...+ +-+.+...+.++.++...... ....+.. ....+-..+++ .+++-...+++||..+.+. +..|
T Consensus 116 ~~~fl~ll~r~d--~~iv~~~~~Ils~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR 191 (442)
T KOG2759|consen 116 WLSFLNLLNRQD--TFIVEMSFRILSKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYR 191 (442)
T ss_pred hHHHHHHHhcCC--hHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchh
Confidence 467788777653 556676888888877643221 1111111 22334444554 5777888899999999887 5566
Q ss_pred chhhhhcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 009514 266 AGSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNL 342 (533)
Q Consensus 266 ~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~al~aL~~l 342 (533)
.. +..+.++..++..+. ..+-.+|+..+.++.-|+.+ +...+.+...+.|+.|..+++.. .+.|-+-.+.++.|+
T Consensus 192 ~~-~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nl 269 (442)
T KOG2759|consen 192 YA-FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNL 269 (442)
T ss_pred he-eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 788889999999883 35788999999999999864 45556777789999999999864 467777888899999
Q ss_pred hccCC-hHhHH----HHHHhhcHHHHHhhhC---CCChhHHHHHHH---------------------HHHHhhcCCcch-
Q 009514 343 IFLAE-DKCKE----EIFMELTASLLASLIC---DPEPSVQEQALA---------------------LVRNLVDGRINS- 392 (533)
Q Consensus 343 ~~~~~-~~~~~----~i~~~~~~~~l~~lL~---~~~~~v~~~a~~---------------------~L~~l~~~~~~~- 392 (533)
+...+ .+.++ .++..+ ++.-++.|. -+|+++....-. ......+.+|.+
T Consensus 270 l~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk 348 (442)
T KOG2759|consen 270 LDKGPDRETKKDIASQMVLCK-VLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHK 348 (442)
T ss_pred hccCchhhHHHHHHHHHHhcC-chHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccc
Confidence 87442 12333 233333 333334442 123333222111 111111222211
Q ss_pred HHHHHhhc-------C-chHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC
Q 009514 393 VEYIFAED-------G-IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN 464 (533)
Q Consensus 393 ~~~i~~~~-------~-~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~ 464 (533)
-+.++.+. . .++..|.++|+.+.+|.+-.-||+-|+.+....|..+. ++++ .|+-..++++++++
T Consensus 349 ~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~-vv~k------~ggKe~vM~Llnh~ 421 (442)
T KOG2759|consen 349 SEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA-VVEK------YGGKERVMNLLNHE 421 (442)
T ss_pred ccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH-HHHH------hchHHHHHHHhcCC
Confidence 11222221 1 27888999999978899999999999999987776544 4553 78889999999999
Q ss_pred ChhHHHHHHHHHHhhc
Q 009514 465 DSRLRTAAVWAVLNLT 480 (533)
Q Consensus 465 ~~~v~~~a~~~L~~l~ 480 (533)
|++||.+|..|+..+.
T Consensus 422 d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 422 DPEVRYHALLAVQKLM 437 (442)
T ss_pred CchHHHHHHHHHHHHH
Confidence 9999999999988776
No 70
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.70 E-value=2.4e-06 Score=82.64 Aligned_cols=215 Identities=15% Similarity=0.163 Sum_probs=147.0
Q ss_pred cCChhhHHHHHHHHHHhhhcCCCcchhhhhH------hhhHHHHHHhcC-CCCchhhhHHHHHHhhhcCCHHHHHHHHHc
Q 009514 113 DRFARTRLLASLCLIVIRNASPCYLQDVGIK------TKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEV 185 (533)
Q Consensus 113 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~------~~~i~~L~~ll~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 185 (533)
+.+.++.......+..+....+.. .+.+.. .....+++++++ ++..++..++.+++.+....+....... .
T Consensus 68 ~~~~d~v~yvL~li~dll~~~~~~-~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~ 145 (312)
T PF03224_consen 68 SSNDDTVQYVLTLIDDLLSDDPSR-VELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-K 145 (312)
T ss_dssp ---HHHHHHHHHHHHHHHH-SSSS-HHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-H
T ss_pred cCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-H
Confidence 457788888888888888877642 333332 225778888887 4556789999999999876554333211 3
Q ss_pred CcHHHHHHhhhcCCC--CchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc------C-CCCHHHHHHHHHHHHH
Q 009514 186 NGVDKLYNHLQKGSL--HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL------A-HDSSDVRSAACMCLRS 256 (533)
Q Consensus 186 ~~l~~L~~~L~~~~~--~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L------~-~~~~~v~~~a~~~L~~ 256 (533)
+.++.++++|.+... +...+..++.+|.++.. .+.+|..+.+.++++.+.+.+ + ..+..+++.++-|++.
T Consensus 146 ~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWl 224 (312)
T PF03224_consen 146 EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWL 224 (312)
T ss_dssp HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHH
Confidence 557888888776321 23355888999999985 578999999999999999999 2 2356899999999999
Q ss_pred HhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCch-hHHHHHHhCcHHHHHHhhcC--CCHHHH
Q 009514 257 VSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT-RRSTFIRLGGVKLLVQLSKS--MDSTIR 332 (533)
Q Consensus 257 ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~-~~~~~~~~~~i~~L~~ll~~--~~~~~~ 332 (533)
|+.+.+ .... +...+.++.|+++++ ...+++..-+..++.|+...... +...++..|+++.+-.+... +|+++.
T Consensus 225 LSF~~~-~~~~-~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ 302 (312)
T PF03224_consen 225 LSFEPE-IAEE-LNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLT 302 (312)
T ss_dssp HTTSHH-HHHH-HHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHH
T ss_pred HhcCHH-HHHH-HhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHH
Confidence 999843 3333 567789999999997 56889999999999999975543 66777877766666555544 355543
No 71
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.70 E-value=1.8e-06 Score=83.49 Aligned_cols=208 Identities=21% Similarity=0.232 Sum_probs=143.9
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhh------chHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc
Q 009514 188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL------QVLKLVVDALAHDSSDVRSAACMCLRSVSRSI 261 (533)
Q Consensus 188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~------~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~ 261 (533)
...++++|...+.++++..+.+..+..+..+++...+.+... ....+++++++.+++-++..|+..|..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 445556555442357788999999999988777555555542 25788888999999999999999999997653
Q ss_pred ccccchhhhhcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh-----cC--CCHH
Q 009514 262 KNLSAGSFMNETIVIPLVRLLDD----TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS-----KS--MDST 330 (533)
Q Consensus 262 ~~~~~~~~~~~~~i~~Lv~lL~~----~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll-----~~--~~~~ 330 (533)
+..... ...+.++.+++++.+ ++.+++..|+.+|.++.. .+..+..+.+.|+++.+..++ .+ .+..
T Consensus 137 ~~~~~~--~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 137 PKRSEK--LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp TT--HH--HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred Cccccc--hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 322211 124678888888864 456788999999999995 678888999999999999998 22 2355
Q ss_pred HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcc-hHHHHHhhc
Q 009514 331 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALVRNLVDGRIN-SVEYIFAED 400 (533)
Q Consensus 331 ~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~~ 400 (533)
++.+++.++.-++. +++..+.+...+.++.++++++ ...++|..-++.+++|+....++ ....++..+
T Consensus 214 l~Y~~ll~lWlLSF--~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~ 283 (312)
T PF03224_consen 214 LQYQALLCLWLLSF--EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCG 283 (312)
T ss_dssp HHHHHHHHHHHHTT--SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-
T ss_pred HHHHHHHHHHHHhc--CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHcc
Confidence 77788888888876 4567777888888899999886 56789999999999999987665 444555544
No 72
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=0.00012 Score=74.79 Aligned_cols=390 Identities=15% Similarity=0.175 Sum_probs=216.5
Q ss_pred hHHHHhhhcCCCcchhHHHHH-HHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514 19 MEFLLSLLNNESENVSGLGAS-IISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV 96 (533)
Q Consensus 19 i~~L~~lL~~~~~~v~~~a~~-~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~ 96 (533)
-..|..||+|..+.-+.-|.+ +|+-+++..+- ....|..++-..+ +..++.-.---|-+-++.+|+.. +
T Consensus 37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA--L- 107 (968)
T KOG1060|consen 37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA--L- 107 (968)
T ss_pred hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce--e-
Confidence 367888999877666555555 66677755442 2245566666654 66676665444555577766652 1
Q ss_pred cccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCC
Q 009514 97 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEK 175 (533)
Q Consensus 97 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~ 175 (533)
-.|..+-+-++++++-+|..|.+.|..+-. .++..-++-.+-+...|. +.+|..|+.++-++-.-+
T Consensus 108 -----LSIntfQk~L~DpN~LiRasALRvlSsIRv--------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd 174 (968)
T KOG1060|consen 108 -----LSINTFQKALKDPNQLIRASALRVLSSIRV--------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLD 174 (968)
T ss_pred -----eeHHHHHhhhcCCcHHHHHHHHHHHHhcch--------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCC
Confidence 246677889999999999999988775322 121111222222333453 578999999999997777
Q ss_pred HHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHH
Q 009514 176 EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLR 255 (533)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~ 255 (533)
++....+ +..+-.+|.+. ++.+.-.|+.++...|-+. -+.+ ++-...+-++|-+-+.=-|.-....|.
T Consensus 175 ~e~k~qL-----~e~I~~LLaD~--splVvgsAv~AF~evCPer---ldLI--HknyrklC~ll~dvdeWgQvvlI~mL~ 242 (968)
T KOG1060|consen 175 PEQKDQL-----EEVIKKLLADR--SPLVVGSAVMAFEEVCPER---LDLI--HKNYRKLCRLLPDVDEWGQVVLINMLT 242 (968)
T ss_pred hhhHHHH-----HHHHHHHhcCC--CCcchhHHHHHHHHhchhH---HHHh--hHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 6654322 23344445454 3677778888888777422 1111 223344444554433323333444444
Q ss_pred HHhhcc-ccc-c---------------c------hhhhhcCcHHHHH----HhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514 256 SVSRSI-KNL-S---------------A------GSFMNETIVIPLV----RLLDDTSTAVQVAALGAISNIVVDFTTRR 308 (533)
Q Consensus 256 ~ls~~~-~~~-~---------------~------~~~~~~~~i~~Lv----~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 308 (533)
..++.. ... . . ..+....-+..|+ .++.+.++.|..+++.+...++- .. +
T Consensus 243 RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP--~~-~ 319 (968)
T KOG1060|consen 243 RYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAP--KN-Q 319 (968)
T ss_pred HHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCC--HH-H
Confidence 444431 000 0 0 0000001112222 34557788999999999999883 22 1
Q ss_pred HHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhh-hCCCC-hhHHHHHHHHHHHhh
Q 009514 309 STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPE-PSVQEQALALVRNLV 386 (533)
Q Consensus 309 ~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-L~~~~-~~v~~~a~~~L~~l~ 386 (533)
...++++|+++|.+. ..+|...+..+..++.... . ...+.+-.+ +.++| ..+...=+.+|.+++
T Consensus 320 ----~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~-----~----lF~P~lKsFfv~ssDp~~vk~lKleiLs~La 385 (968)
T KOG1060|consen 320 ----VTKIAKALVRLLRSN-REVQYVVLQNIATISIKRP-----T----LFEPHLKSFFVRSSDPTQVKILKLEILSNLA 385 (968)
T ss_pred ----HHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcch-----h----hhhhhhhceEeecCCHHHHHHHHHHHHHHHh
Confidence 134578899988754 4556666666666654221 1 112233222 22333 334445556667766
Q ss_pred cCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh
Q 009514 387 DGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS 466 (533)
Q Consensus 387 ~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~ 466 (533)
... .+..+ ++-+...+.+ .+.++...+..+|+.++...-...+.++ .-|+.++++.+.
T Consensus 386 ~es--ni~~I-------LrE~q~YI~s-~d~~faa~aV~AiGrCA~~~~sv~~tCL------------~gLv~Llsshde 443 (968)
T KOG1060|consen 386 NES--NISEI-------LRELQTYIKS-SDRSFAAAAVKAIGRCASRIGSVTDTCL------------NGLVQLLSSHDE 443 (968)
T ss_pred hhc--cHHHH-------HHHHHHHHhc-CchhHHHHHHHHHHHHHHhhCchhhHHH------------HHHHHHHhcccc
Confidence 432 22222 2333333444 3335666677777777664444444444 346677777777
Q ss_pred hHHHHHHHHHHhhcC
Q 009514 467 RLRTAAVWAVLNLTC 481 (533)
Q Consensus 467 ~v~~~a~~~L~~l~~ 481 (533)
.|-.+++..|-.|..
T Consensus 444 ~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 444 LVVAEAVVVIKRLLQ 458 (968)
T ss_pred hhHHHHHHHHHHHHh
Confidence 777777777777774
No 73
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.65 E-value=1e-05 Score=77.07 Aligned_cols=320 Identities=13% Similarity=0.155 Sum_probs=206.6
Q ss_pred ccchHHHHhhhcCC-CcchhHHHHHHHHHhhcCchhHHHHHhc-------CchHHHHHhhcC-ChHHHHHHHHHHHHHhc
Q 009514 16 EENMEFLLSLLNNE-SENVSGLGASIISHSCKTSLEQKLLFDA-------GVLKRLTSLLGG-SLIQRDASLESIATIFK 86 (533)
Q Consensus 16 ~~~i~~L~~lL~~~-~~~v~~~a~~~l~~~~~~~~~~~~i~~~-------g~i~~L~~lL~~-~~~v~~~al~aL~~l~~ 86 (533)
+..+..+++|++.. .++..+.+...+..+-..+..|..+++. -.-++.+++|.. +.-..+.....++.++.
T Consensus 64 ~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~ 143 (442)
T KOG2759|consen 64 AQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLAC 143 (442)
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 46778899999854 4677777777777776666555554441 123455666654 55555656677777654
Q ss_pred CChhhhhhhccccCcccHHHHHHHHhc-CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhc-CC--CCchhh
Q 009514 87 NNPEVVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL-DD--PGRVGD 162 (533)
Q Consensus 87 ~~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll-~~--~~~~~~ 162 (533)
.......-- ...-....+-..+++ .++.....+++||..+....+ .+..++..+++..++..+ +. +-.++.
T Consensus 144 ~g~~~~~~~---e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~e--yR~~~v~adg~~~l~~~l~s~~~~~QlQY 218 (442)
T KOG2759|consen 144 FGNCKMELS---ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDE--YRYAFVIADGVSLLIRILASTKCGFQLQY 218 (442)
T ss_pred hccccccch---HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcc--hhheeeecCcchhhHHHHhccCcchhHHH
Confidence 322221100 000012234445555 777888899999999988764 356677788888999888 42 346788
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch------hhhHhhhhhchHHHHH
Q 009514 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE------CCRSRCLSLQVLKLVV 236 (533)
Q Consensus 163 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~------~~~~~~~~~~~l~~l~ 236 (533)
...+++..|..+..-. +.+...+.++.|.++++.+. -+.+..-++.++.++....+ .....++..++.+. +
T Consensus 219 qsifciWlLtFn~~~a-e~~~~~~li~~L~~Ivk~~~-KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~-l 295 (442)
T KOG2759|consen 219 QSIFCIWLLTFNPHAA-EKLKRFDLIQDLSDIVKEST-KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKT-L 295 (442)
T ss_pred HHHHHHHHhhcCHHHH-HHHhhccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHH-H
Confidence 8888888887654443 55566788999999888763 34555667778888876543 22223444444444 4
Q ss_pred HhcCC---CCHHHHHHHHHHHHHH----------------------hhccccccchhh--------h--hcCcHHHHHHh
Q 009514 237 DALAH---DSSDVRSAACMCLRSV----------------------SRSIKNLSAGSF--------M--NETIVIPLVRL 281 (533)
Q Consensus 237 ~~L~~---~~~~v~~~a~~~L~~l----------------------s~~~~~~~~~~~--------~--~~~~i~~Lv~l 281 (533)
+.|.. .++++....-..-..| .+++.. +..+| - ...++..|+++
T Consensus 296 ~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~H-k~e~FW~eNa~rlnennyellkiL~~l 374 (442)
T KOG2759|consen 296 QSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVH-KSEKFWRENADRLNENNYELLKILIKL 374 (442)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccc-cccchHHHhHHHHhhccHHHHHHHHHH
Confidence 44432 2333332222111111 111100 00011 1 22367889999
Q ss_pred hc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514 282 LD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 344 (533)
Q Consensus 282 L~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~ 344 (533)
|+ +.||-+...||.=|+.....++..+..+.+.||=..++++++++|+++|-+|+.|+..+..
T Consensus 375 Le~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 375 LETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 97 4579999999999999999999999888889999999999999999999999999987754
No 74
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.63 E-value=2e-06 Score=83.76 Aligned_cols=183 Identities=17% Similarity=0.226 Sum_probs=134.8
Q ss_pred HHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC
Q 009514 206 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT 285 (533)
Q Consensus 206 ~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~ 285 (533)
.+++..|..++..-.-.|..+.+..+.+.|+++|+.++..+...+...++|+.-..++++.. |.+.+++..|+.++.+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~-fL~~~iIdvl~~~v~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAG-FLEKSIIDVLVNLVMSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHH-HHHhhHHHHHHHHhhcc
Confidence 44555666666554556777778889999999999999888888999999998777888877 89999999999999888
Q ss_pred CHHHHHHHHHHHHHHhcCCchh-HHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh--HhHHHHHHh----h
Q 009514 286 STAVQVAALGAISNIVVDFTTR-RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED--KCKEEIFME----L 358 (533)
Q Consensus 286 ~~~v~~~a~~aL~nl~~~~~~~-~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~--~~~~~i~~~----~ 358 (533)
|..+|....|.+..+..+.... +-.++...++..++.+.++++-.++...+..|.|++.+... +.++..+.. -
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 8899999999999999876553 23456678899999999999999999999999999874432 122211111 1
Q ss_pred cHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514 359 TASLLASLICDPEPSVQEQALALVRNLVDGR 389 (533)
Q Consensus 359 ~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~ 389 (533)
....+++-++..+|-..++.+..|.+++..+
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d 596 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACD 596 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhcc
Confidence 2334455555555444444455555555443
No 75
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.63 E-value=4.6e-06 Score=79.92 Aligned_cols=279 Identities=13% Similarity=0.120 Sum_probs=189.9
Q ss_pred hhHhhhhhchHHHHHHhcCCCCH--HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHH
Q 009514 222 CRSRCLSLQVLKLVVDALAHDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAIS 298 (533)
Q Consensus 222 ~~~~~~~~~~l~~l~~~L~~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~ 298 (533)
..+.+...|++..|++++..++. .||..+.+.|-.+... .+. .. +...| ...++.+.+ ...++.+...+..|.
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~-d~-va~~~-~~~Il~lAK~~e~~e~aR~~~~il~ 247 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENR-DR-VARIG-LGVILNLAKEREPVELARSVAGILE 247 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhh-hH-Hhhcc-chhhhhhhhhcCcHHHHHHHHHHHH
Confidence 34556677999999999998865 5699999999877543 222 11 33333 444555544 456789999999999
Q ss_pred HHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHH
Q 009514 299 NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQA 378 (533)
Q Consensus 299 nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a 378 (533)
++-.++.+..+.++..|++..++-..+..++.+..++..+|+|++.+...+.++.+++....+.|..+-.+.|.-.+-.|
T Consensus 248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A 327 (832)
T KOG3678|consen 248 HMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA 327 (832)
T ss_pred HHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence 99988888788899999999999888988999999999999999988888899999999999999999988888888899
Q ss_pred HHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHH
Q 009514 379 LALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCII 458 (533)
Q Consensus 379 ~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv 458 (533)
|-++.-++.+. .++..+...| -+.++-.++.+ -+|..... --...+.|.. .+-++.|+
T Consensus 328 ClAV~vlat~K--E~E~~VrkS~-TlaLVEPlva~-~DP~~FAR---D~hd~aQG~~---------------~d~LqRLv 385 (832)
T KOG3678|consen 328 CLAVAVLATNK--EVEREVRKSG-TLALVEPLVAS-LDPGRFAR---DAHDYAQGRG---------------PDDLQRLV 385 (832)
T ss_pred HHHHhhhhhhh--hhhHHHhhcc-chhhhhhhhhc-cCcchhhh---hhhhhhccCC---------------hHHHHHhh
Confidence 98888887653 2333333333 22222222333 22221111 1112222211 23446788
Q ss_pred HhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhh
Q 009514 459 KFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 528 (533)
Q Consensus 459 ~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~ 528 (533)
-+|++...+.+.-+++-++-=+..+ .-......+.+-|++..|.++..++++--...|..||.-+-+.
T Consensus 386 PlLdS~R~EAq~i~AF~l~~EAaIK--s~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 386 PLLDSNRLEAQCIGAFYLCAEAAIK--SLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred hhhhcchhhhhhhHHHHHHHHHHHH--HhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 8888776666655554443222211 1122356788999999999999866655455678888766443
No 76
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.63 E-value=4.3e-06 Score=80.15 Aligned_cols=274 Identities=16% Similarity=0.111 Sum_probs=180.6
Q ss_pred HHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHhh
Q 009514 181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSR 259 (533)
Q Consensus 181 ~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~-~~~~~v~~~a~~~L~~ls~ 259 (533)
.+...|++..|++++..++....+|..|.+.|-.+.. .++++.+...| +..++.+-+ .+.++.....+..|.+|-.
T Consensus 175 ~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 175 AIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFK 251 (832)
T ss_pred HhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhh
Confidence 3455789999999998887666778999998887764 45677777766 555555554 3467888888999999987
Q ss_pred ccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514 260 SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVD-FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA 338 (533)
Q Consensus 260 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~a 338 (533)
+.+..+.. +++.|++..++-.++..+|.+...|+-+|+|.+.. ....+..+++..+-+.|..+..+.++-+|.+|+-+
T Consensus 252 HSeet~~~-Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClA 330 (832)
T KOG3678|consen 252 HSEETCQR-LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLA 330 (832)
T ss_pred hhHHHHHH-HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHH
Confidence 76777777 89999999999999999999999999999998863 33456678888888888888888888899999999
Q ss_pred HHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchh
Q 009514 339 LRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE 418 (533)
Q Consensus 339 L~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~ 418 (533)
++.++...+ .-..+...+.+..+-.++.+-|+.-.. .+. -++.-..+..-++.|+.+|.+ ..-+
T Consensus 331 V~vlat~KE--~E~~VrkS~TlaLVEPlva~~DP~~FA----------RD~---hd~aQG~~~d~LqRLvPlLdS-~R~E 394 (832)
T KOG3678|consen 331 VAVLATNKE--VEREVRKSGTLALVEPLVASLDPGRFA----------RDA---HDYAQGRGPDDLQRLVPLLDS-NRLE 394 (832)
T ss_pred Hhhhhhhhh--hhHHHhhccchhhhhhhhhccCcchhh----------hhh---hhhhccCChHHHHHhhhhhhc-chhh
Confidence 999876332 333344444443333344333332110 000 001111111256667677775 4444
Q ss_pred HHHHHHHHHHHhcc-CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514 419 IEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 419 v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~ 480 (533)
-+.-+++-++.=+. .+......++. +-|.++.|.++.+++|.-.-+-|..+|.-+.
T Consensus 395 Aq~i~AF~l~~EAaIKs~Q~K~kVFs------eIGAIQaLKevaSS~d~vaakfAseALtviG 451 (832)
T KOG3678|consen 395 AQCIGAFYLCAEAAIKSLQGKTKVFS------EIGAIQALKEVASSPDEVAAKFASEALTVIG 451 (832)
T ss_pred hhhhHHHHHHHHHHHHHhccchhHHH------HHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence 44444443322221 11222233444 3688889999888887655555555665554
No 77
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2.1e-05 Score=80.57 Aligned_cols=336 Identities=19% Similarity=0.249 Sum_probs=206.5
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHH
Q 009514 103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKL 181 (533)
Q Consensus 103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~ 181 (533)
...++.+.++++++.+|..|+-|..++...++ +.....|.++.|..++.| ++.+-..|..+|..+.+.+++....
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~----~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~ 197 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP----DLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLL 197 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh----hhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcc
Confidence 34567778999999999999999999988654 345678999999999995 5677888888888887655421000
Q ss_pred HHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc
Q 009514 182 AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSI 261 (533)
Q Consensus 182 ~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~ 261 (533)
-.....+..++..+...+ +|. -+..+..++.+.+.- ..-....+..+...|++.+..|...+.+.+.++....
T Consensus 198 ~l~~~~~~~lL~al~ec~-EW~----qi~IL~~l~~y~p~d--~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~ 270 (734)
T KOG1061|consen 198 ELNPQLINKLLEALNECT-EWG----QIFILDCLAEYVPKD--SREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYL 270 (734)
T ss_pred cccHHHHHHHHHHHHHhh-hhh----HHHHHHHHHhcCCCC--chhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHH
Confidence 000111233333333331 222 233334444322211 1111246777888889999999999999998887654
Q ss_pred ccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh-HHH------------HHHhC-------------
Q 009514 262 KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR-RST------------FIRLG------------- 315 (533)
Q Consensus 262 ~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~-~~~------------~~~~~------------- 315 (533)
++... .......++|+.++..+. +++..+..-+.-+....+.. +.. -++..
T Consensus 271 ~~~~~--~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~n 347 (734)
T KOG1061|consen 271 KQVNE--LLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDAN 347 (734)
T ss_pred HHHHH--HHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhH
Confidence 44222 244567788888887766 78877776665554432221 100 01111
Q ss_pred ---cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcch
Q 009514 316 ---GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS 392 (533)
Q Consensus 316 ---~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 392 (533)
.+..+..+...-+.+..+.+++++++++.-... . .+.++.++.+++-.-..+...++-.++.+....|..
T Consensus 348 l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~----~---~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~ 420 (734)
T KOG1061|consen 348 LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ----S---NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNK 420 (734)
T ss_pred HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh----h---hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCc
Confidence 222333333445677888899999988653321 1 456888999998666666777777888888776655
Q ss_pred HHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHH
Q 009514 393 VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAA 472 (533)
Q Consensus 393 ~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a 472 (533)
.+.+. ..+...+.+-.+|+.+.+-.|+++..+..-++ ...+ +..+++...+.+..|+.+-
T Consensus 421 ~~~vv-------~~l~~~~~sl~epeak~amiWilg~y~~~i~~-a~el------------L~~f~en~~dE~~~Vql~L 480 (734)
T KOG1061|consen 421 YESVV-------AILCENLDSLQEPEAKAALIWILGEYAERIEN-ALEL------------LESFLENFKDETAEVQLEL 480 (734)
T ss_pred hhhhh-------hhhcccccccCChHHHHHHHHHHhhhhhccCc-HHHH------------HHHHHhhcccchHHHHHHH
Confidence 44433 33334444446789999999999988764332 2222 2344555556666666666
Q ss_pred HHHHHhh
Q 009514 473 VWAVLNL 479 (533)
Q Consensus 473 ~~~L~~l 479 (533)
..+...+
T Consensus 481 Lta~ik~ 487 (734)
T KOG1061|consen 481 LTAAIKL 487 (734)
T ss_pred HHHHHHH
Confidence 5555553
No 78
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=8.8e-05 Score=74.36 Aligned_cols=454 Identities=16% Similarity=0.091 Sum_probs=251.3
Q ss_pred cccccccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCCh
Q 009514 11 YDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNP 89 (533)
Q Consensus 11 ~~l~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~ 89 (533)
.|..-...+..++.-++.+++++|+...+++..+....+.. ...-..+.+.++++. ...-|..+...++.+..++.
T Consensus 90 ~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~---~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~ 166 (569)
T KOG1242|consen 90 VDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGL---SGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG 166 (569)
T ss_pred cCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhcc---CHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH
Confidence 34444567788899999999999999888888765332221 112245567777775 45677888888888876654
Q ss_pred hhhhhhccccCcccHHHHHHHHhcCChhhHHH-HHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhc---CC-CCchhhhH
Q 009514 90 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLL-ASLCLIVIRNASPCYLQDVGIKTKLINNLLELL---DD-PGRVGDEA 164 (533)
Q Consensus 90 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~-a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll---~~-~~~~~~~a 164 (533)
... + ...+.+..+....++.....+.. +.-+.-........ ..+...+|.+-.++ ++ ...+|..+
T Consensus 167 i~~--~---~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~-----~~EPyiv~~lp~il~~~~d~~~~Vr~Aa 236 (569)
T KOG1242|consen 167 IES--L---KEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP-----PFEPYIVPILPSILTNFGDKINKVREAA 236 (569)
T ss_pred Hhh--h---hhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC-----CCCchHHhhHHHHHHHhhccchhhhHHH
Confidence 432 1 22467777888888776654332 33332222222111 12233444444444 33 35666665
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCH
Q 009514 165 SFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS 244 (533)
Q Consensus 165 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~ 244 (533)
..+...+...-+.. .+. ..+|.++.-+... .|+.+.+++..++.++...+ ..-...-..++|.+.+.|.+..+
T Consensus 237 ~~a~kai~~~~~~~---aVK-~llpsll~~l~~~--kWrtK~aslellg~m~~~ap-~qLs~~lp~iiP~lsevl~DT~~ 309 (569)
T KOG1242|consen 237 VEAAKAIMRCLSAY---AVK-LLLPSLLGSLLEA--KWRTKMASLELLGAMADCAP-KQLSLCLPDLIPVLSEVLWDTKP 309 (569)
T ss_pred HHHHHHHHHhcCcc---hhh-HhhhhhHHHHHHH--hhhhHHHHHHHHHHHHHhch-HHHHHHHhHhhHHHHHHHccCCH
Confidence 55544332211110 011 1234444434333 37888999999998774332 22334456799999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh
Q 009514 245 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS 324 (533)
Q Consensus 245 ~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll 324 (533)
++|.++..++..++.-.++.- -..++|.|++.+.++...+ ..|...|+.=.. -......--+=.+|.|.+-+
T Consensus 310 evr~a~~~~l~~~~svidN~d-----I~~~ip~Lld~l~dp~~~~-~e~~~~L~~ttF--V~~V~~psLalmvpiL~R~l 381 (569)
T KOG1242|consen 310 EVRKAGIETLLKFGSVIDNPD-----IQKIIPTLLDALADPSCYT-PECLDSLGATTF--VAEVDAPSLALMVPILKRGL 381 (569)
T ss_pred HHHHHHHHHHHHHHHhhccHH-----HHHHHHHHHHHhcCcccch-HHHHHhhcceee--eeeecchhHHHHHHHHHHHH
Confidence 999999999999987644432 2357888888888776443 333444422111 00000000011244444555
Q ss_pred cCCCHHHHHHHHHHHHHhhccC-ChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCch
Q 009514 325 KSMDSTIRLNALRALRNLIFLA-EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII 403 (533)
Q Consensus 325 ~~~~~~~~~~al~aL~~l~~~~-~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~ 403 (533)
...+..+++.++....|++.-. ++..-...+. ..++-+-..+.+..|++|.-+..+|..+..+... .-+ .. .
T Consensus 382 ~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~---~~f-~d--~ 454 (569)
T KOG1242|consen 382 AERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGALLERLGE---VSF-DD--L 454 (569)
T ss_pred hhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh---hcc-cc--c
Confidence 5566778888888999998654 3322222222 2355566666778999999999999887755211 111 11 4
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHhccCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHhhc
Q 009514 404 LDAVGRQLRIASKAEIEIQGMYVLGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLT 480 (533)
Q Consensus 404 ~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~--~~~v~~~a~~~L~~l~ 480 (533)
.+.+...+.+.....-+..++..++....+- .+... ..++.++....+. ++.++..-.|.+.-+.
T Consensus 455 ~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~------------~~~~~~~a~~~~~~~~~~~~dg~~~~~~~lp 522 (569)
T KOG1242|consen 455 IPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVE------------DILPEILANASSVLIDERIRDGVIWLFYLLP 522 (569)
T ss_pred ccHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHH------------HHHHHHHHHHhhccchhhhccCeeehhhccc
Confidence 4555555544222333444455554444322 12222 3334444444433 3446766666665444
Q ss_pred CCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHH
Q 009514 481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKL 516 (533)
Q Consensus 481 ~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~ 516 (533)
. . -..+...++ ..+++.+.+-+.|.++.++.
T Consensus 523 ~--~-~~~~~~~yi--~~i~~~~~k~~ad~de~~~~ 553 (569)
T KOG1242|consen 523 Y--I-FGFQFQPYI--HEILDEFLKGLADNDEKGRD 553 (569)
T ss_pred h--h-hhHHhHHHH--HHHHHHHHHHhhhcCCcccc
Confidence 2 0 111122222 23566777766655555443
No 79
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=4.5e-05 Score=75.08 Aligned_cols=319 Identities=13% Similarity=0.112 Sum_probs=191.8
Q ss_pred hHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch
Q 009514 142 IKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE 220 (533)
Q Consensus 142 ~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~ 220 (533)
..++++|+.+..+++ +..++..|++.+-|+++....- ...+-......+.++..++ +..++ .+...+-.+-.+-.
T Consensus 81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~-v~~~Fn~iFdvL~klsaDs--d~~V~-~~aeLLdRLikdIV 156 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE-VLVYFNEIFDVLCKLSADS--DQNVR-GGAELLDRLIKDIV 156 (675)
T ss_pred HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC-cccchHHHHHHHHHHhcCC--ccccc-cHHHHHHHHHHHhc
Confidence 456888999988885 5789999999999887432210 0011112234555544333 23333 33334443332110
Q ss_pred hhhH-hhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 009514 221 CCRS-RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN 299 (533)
Q Consensus 221 ~~~~-~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n 299 (533)
.-+. .+--.+.+|.+-+-+...++..|....+-|.-+-.. +..... -.-..+.+-|+.+|.+++++++..+-.++.+
T Consensus 157 te~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~~~m~-~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~ 234 (675)
T KOG0212|consen 157 TESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PDLEMI-SYLPSLLDGLFNMLSDSSDEVRTLTDTLLSE 234 (675)
T ss_pred cccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-CcHHHH-hcchHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 0011 122235677777777778888888777777666333 222111 1234567788999999999999888888877
Q ss_pred HhcCCchhHHHH-HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChh-HHHH
Q 009514 300 IVVDFTTRRSTF-IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPS-VQEQ 377 (533)
Q Consensus 300 l~~~~~~~~~~~-~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~-v~~~ 377 (533)
+...-. ..... --...++.++.-++++++.++..|+.-+..+..-.++.. -..-.+.+..++.++.++++. +++.
T Consensus 235 fL~eI~-s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~--l~~~s~il~~iLpc~s~~e~~~i~~~ 311 (675)
T KOG0212|consen 235 FLAEIR-SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL--LLYLSGILTAILPCLSDTEEMSIKEY 311 (675)
T ss_pred HHHHHh-cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch--hhhhhhhhhhcccCCCCCccccHHHH
Confidence 654211 11111 123578889999999999999999888887765443211 112234456677777766553 4433
Q ss_pred HH---HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhH
Q 009514 378 AL---ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 454 (533)
Q Consensus 378 a~---~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 454 (533)
+. +.+..++.......+ +..| .+++.+.+.+.+ ...+.+..++.-+..+-...+. +.+. +.+.+.
T Consensus 312 a~~~n~~l~~l~s~~~~~~~--id~~-~ii~vl~~~l~~-~~~~tri~~L~Wi~~l~~~~p~--ql~~------h~~~if 379 (675)
T KOG0212|consen 312 AQMVNGLLLKLVSSERLKEE--IDYG-SIIEVLTKYLSD-DREETRIAVLNWIILLYHKAPG--QLLV------HNDSIF 379 (675)
T ss_pred HHHHHHHHHHHHhhhhhccc--cchH-HHHHHHHHHhhc-chHHHHHHHHHHHHHHHhhCcc--hhhh------hccHHH
Confidence 32 233444432211111 2222 277888888887 6777888887766666654442 2222 125677
Q ss_pred HHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 455 SCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 455 ~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
+-|..-|++++.+|-..+...+.+++.
T Consensus 380 ~tLL~tLsd~sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 380 LTLLKTLSDRSDEVVLLALSLLASICS 406 (675)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHHHhc
Confidence 888899999999999999999999996
No 80
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=3.2e-05 Score=79.20 Aligned_cols=410 Identities=18% Similarity=0.180 Sum_probs=236.9
Q ss_pred ccchHHHHhhhcCCCcchhHHHHH-HHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhh
Q 009514 16 EENMEFLLSLLNNESENVSGLGAS-IISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVS 93 (533)
Q Consensus 16 ~~~i~~L~~lL~~~~~~v~~~a~~-~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~ 93 (533)
.+.++.+-+-|.+....-+..|++ +|+.+.-..+. .+..+.++..... +..++.-+--=+.+-+...|+.+
T Consensus 12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~Dv------SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a- 84 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGKDV------SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA- 84 (734)
T ss_pred hhhchHHHHHhhhhhhhhHHHHHHHHHhcCccCcch------HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-
Confidence 456666666666655555555444 66665433221 1223334443332 22333333223334355555443
Q ss_pred hhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhh
Q 009514 94 QFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLI 172 (533)
Q Consensus 94 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~ 172 (533)
...+..++.-+.++++.+|..|.+.+..+-.. -+......+|.+.+.+ ++.++..++.+.+++-
T Consensus 85 -------~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--------~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~ 149 (734)
T KOG1061|consen 85 -------ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--------KITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF 149 (734)
T ss_pred -------HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--------HHHHHHHHHHHHhccCCChhHHHHHHHHHHHhh
Confidence 34566677777889999999888776654331 2345578888898985 6788999998888887
Q ss_pred cCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHH
Q 009514 173 AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACM 252 (533)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~ 252 (533)
..+.+ ...+.|.++.|-.++.++ +|.+..+|+.+|..+...++...........+..+++.+..-+.--|. .
T Consensus 150 ~~~~~---~~~~~gl~~~L~~ll~D~--~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi---~ 221 (734)
T KOG1061|consen 150 DIDPD---LVEDSGLVDALKDLLSDS--NPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQI---F 221 (734)
T ss_pred cCChh---hccccchhHHHHHHhcCC--CchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHH---H
Confidence 66654 345667778888877754 478889999999988765433111122233444555555444333333 3
Q ss_pred HHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHH
Q 009514 253 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIR 332 (533)
Q Consensus 253 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~ 332 (533)
+|-.+++..+... .-...++..+...|.+.++.+...+...+.++......... ..-...-++++.++.+.. +++
T Consensus 222 IL~~l~~y~p~d~---~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~q 296 (734)
T KOG1061|consen 222 ILDCLAEYVPKDS---REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQ 296 (734)
T ss_pred HHHHHHhcCCCCc---hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhh
Confidence 3444444322211 11235677788888899999999999999888865444222 222345566776666655 555
Q ss_pred HHHHHHHHHhhccCChHhHH--------------------HHHHh----hcH-HHHHhhh---CCCChhHHHHHHHHHHH
Q 009514 333 LNALRALRNLIFLAEDKCKE--------------------EIFME----LTA-SLLASLI---CDPEPSVQEQALALVRN 384 (533)
Q Consensus 333 ~~al~aL~~l~~~~~~~~~~--------------------~i~~~----~~~-~~l~~lL---~~~~~~v~~~a~~~L~~ 384 (533)
..+++-++-+....+...+. +++.. ..+ +.+.++. .+-|.+...++++++++
T Consensus 297 yvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~ 376 (734)
T KOG1061|consen 297 YVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGR 376 (734)
T ss_pred HHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhh
Confidence 55555444443322211111 11110 111 1111121 24467777888888888
Q ss_pred hhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc-
Q 009514 385 LVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS- 463 (533)
Q Consensus 385 l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~- 463 (533)
++..-++. ++ +++.|..++.. ....+...++-.+..+....+...+.++ +.+...+.+
T Consensus 377 ~aik~e~~------~~--cv~~lLell~~-~~~yvvqE~~vvi~dilRkyP~~~~~vv------------~~l~~~~~sl 435 (734)
T KOG1061|consen 377 LAIKAEQS------ND--CVSILLELLET-KVDYVVQEAIVVIRDILRKYPNKYESVV------------AILCENLDSL 435 (734)
T ss_pred hhhhhhhh------hh--hHHHHHHHHhh-cccceeeehhHHHHhhhhcCCCchhhhh------------hhhccccccc
Confidence 87543221 12 67777777776 5566666677777776665554333332 444455544
Q ss_pred CChhHHHHHHHHHHhhcC
Q 009514 464 NDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 464 ~~~~v~~~a~~~L~~l~~ 481 (533)
.+++.|.+-.|.++..+.
T Consensus 436 ~epeak~amiWilg~y~~ 453 (734)
T KOG1061|consen 436 QEPEAKAALIWILGEYAE 453 (734)
T ss_pred CChHHHHHHHHHHhhhhh
Confidence 577899999999988884
No 81
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.52 E-value=0.00017 Score=73.18 Aligned_cols=215 Identities=17% Similarity=0.135 Sum_probs=151.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHH
Q 009514 105 SCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAF 183 (533)
Q Consensus 105 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~ 183 (533)
+.++.++++.-|.+|.-|+..++.++...|+ .. ..++|.|..=|.+ ++.++..|..++..|+..++...-
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPe----Al--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--- 217 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPE----AL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--- 217 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhH----hH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc---
Confidence 4577899999999999999999998875443 11 2589999999986 577999999999999988875321
Q ss_pred HcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCC-HHHHHHHHHHHHHH--hhc
Q 009514 184 EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-SDVRSAACMCLRSV--SRS 260 (533)
Q Consensus 184 ~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~-~~v~~~a~~~L~~l--s~~ 260 (533)
..-|.+.+++..++.+|. .-..+..+++|+--.|..++ ..++++.+++.+.. ..+.+.+..++... +..
T Consensus 218 --~LAP~ffkllttSsNNWm-LIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~s~g 289 (877)
T KOG1059|consen 218 --QLAPLFYKLLVTSSNNWV-LIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSMSSG 289 (877)
T ss_pred --cccHHHHHHHhccCCCee-hHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence 234788898888766774 35567788888866665543 35888888888664 34555555544322 222
Q ss_pred cccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 009514 261 IKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALR 340 (533)
Q Consensus 261 ~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~ 340 (533)
.++-... ..-+++.|=.++.++|+.+++-++-|++.+...++... . + --..+++.+.+.|+.+|..|+..|.
T Consensus 290 ~~d~~as---iqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V---q-a-~kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 290 MSDHSAS---IQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV---Q-A-HKDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred CCCcHHH---HHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH---H-H-hHHHHHHHhccCCchhHHHHHHHHH
Confidence 1111111 11245566667789999999999999999986554322 2 1 1356678889999999999999998
Q ss_pred Hhhc
Q 009514 341 NLIF 344 (533)
Q Consensus 341 ~l~~ 344 (533)
-++.
T Consensus 362 gmVs 365 (877)
T KOG1059|consen 362 GMVS 365 (877)
T ss_pred HHhh
Confidence 8864
No 82
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.50 E-value=0.00017 Score=69.83 Aligned_cols=449 Identities=15% Similarity=0.106 Sum_probs=228.9
Q ss_pred cccchHHHHhh-hcCCCcchhHHHHHHHHHhhcCchhHHHHHh----cCc--------------hHHHHHhhc--CChHH
Q 009514 15 QEENMEFLLSL-LNNESENVSGLGASIISHSCKTSLEQKLLFD----AGV--------------LKRLTSLLG--GSLIQ 73 (533)
Q Consensus 15 ~~~~i~~L~~l-L~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~----~g~--------------i~~L~~lL~--~~~~v 73 (533)
+++|-|.|+-| |+++++..+-.|..+++.+-..+..-....+ ... -..|+-.|. .++.+
T Consensus 44 ~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~ 123 (728)
T KOG4535|consen 44 PELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQT 123 (728)
T ss_pred CCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 35666665544 6788888888888888766533221111111 111 112333343 35677
Q ss_pred HHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCC------------------
Q 009514 74 RDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC------------------ 135 (533)
Q Consensus 74 ~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~------------------ 135 (533)
...+++||+++..+.|-.+.++-- -......+-.++++.|++|+..+...+-.+.....-
T Consensus 124 ~tq~~kcla~lv~~~p~~~l~~~~--~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~ 201 (728)
T KOG4535|consen 124 VTQIIKCLANLVSNAPYDRLKLSL--LTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSA 201 (728)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHH--HHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcCCCCHHHHHHhcCCCcccccc
Confidence 789999999998877755432210 022333445578899999998887776655433200
Q ss_pred --cc--hhhhh---------------------HhhhH-----------------HHHHHhcC---CCCchhhhHHHHHHh
Q 009514 136 --YL--QDVGI---------------------KTKLI-----------------NNLLELLD---DPGRVGDEASFAFSS 170 (533)
Q Consensus 136 --~~--~~~~~---------------------~~~~i-----------------~~L~~ll~---~~~~~~~~a~~~L~~ 170 (533)
|. .+.-. ....+ ....+.++ +++.++.++.++|.-
T Consensus 202 ~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~ 281 (728)
T KOG4535|consen 202 TPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTL 281 (728)
T ss_pred CCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHH
Confidence 00 00000 00000 00011111 233456677777777
Q ss_pred hhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhcc-----chhhhHhhhhhchHHHH------HHhc
Q 009514 171 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-----LECCRSRCLSLQVLKLV------VDAL 239 (533)
Q Consensus 171 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-----~~~~~~~~~~~~~l~~l------~~~L 239 (533)
++..-.-.+....+. ...+...+ ++..+.+++++...+..+... .++..+.-...+-+-.+ -...
T Consensus 282 ~a~~~~~~~~~~~~l--~RvI~~~~--~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~ 357 (728)
T KOG4535|consen 282 LARYFSMTQAYLMEL--GRVICKCM--GEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRAL 357 (728)
T ss_pred HHHHHHHHHHHHHHH--HHHHHccC--CCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhh
Confidence 765433332222221 11222222 223467778777777665421 11111111111211111 1111
Q ss_pred -CCCCHHHHHHHHHHHHHHhhc-cccccchhhhhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCc
Q 009514 240 -AHDSSDVRSAACMCLRSVSRS-IKNLSAGSFMNETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG 316 (533)
Q Consensus 240 -~~~~~~v~~~a~~~L~~ls~~-~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~ 316 (533)
++..+..+..+|.++.+++.. ..++... .....+....-. ++.+.-++.+|..+++-+..++..........+.
T Consensus 358 YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~---~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~a 434 (728)
T KOG4535|consen 358 YDSEHPTLQASACDALSSILPEAFSNLPND---RQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADA 434 (728)
T ss_pred hhhcCCCchhHHHHHHhhcCchhhcCCCCc---chhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHH
Confidence 123345677788888887532 1111110 001111221122 2344557778888887777666555444444566
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhcc----C-ChH-hHHHHHHhhcHHHHHhh---hCCCChhHHHHHHHHHHHhhc
Q 009514 317 VKLLVQLSKSMDSTIRLNALRALRNLIFL----A-EDK-CKEEIFMELTASLLASL---ICDPEPSVQEQALALVRNLVD 387 (533)
Q Consensus 317 i~~L~~ll~~~~~~~~~~al~aL~~l~~~----~-~~~-~~~~i~~~~~~~~l~~l---L~~~~~~v~~~a~~~L~~l~~ 387 (533)
...+...+.+..-..|..+.|+++|++.. . +++ ..+++.... +..+++. -.-.+++|+.++.++|.|+..
T Consensus 435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~l-l~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLL-LLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 66667777777778899999999998642 1 111 112222211 1222221 123467899999999999873
Q ss_pred CCcchHHHHHhhc-CchHH-HHHHHhcc---CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 009514 388 GRINSVEYIFAED-GIILD-AVGRQLRI---ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ 462 (533)
Q Consensus 388 ~~~~~~~~i~~~~-~~~~~-~L~~~L~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~ 462 (533)
- .+.+.+.+ +.+++ ...+.++. .....|+.++|++++|+.....-..+ +..+ -..+++.|..++.
T Consensus 514 v----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq---~~~w---A~~~F~~L~~Lv~ 583 (728)
T KOG4535|consen 514 F----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ---TAPW---ASQAFNALTSLVT 583 (728)
T ss_pred H----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc---CCCc---hHHHHHHHHHHHH
Confidence 2 12122211 00111 11122221 13568999999999999864321011 0000 0335577888876
Q ss_pred c-CChhHHHHHHHHHHhhcCCC
Q 009514 463 S-NDSRLRTAAVWAVLNLTCSS 483 (533)
Q Consensus 463 ~-~~~~v~~~a~~~L~~l~~~~ 483 (533)
+ .|.++|..|+.+|..-..+.
T Consensus 584 ~~~NFKVRi~AA~aL~vp~~re 605 (728)
T KOG4535|consen 584 SCKNFKVRIRAAAALSVPGKRE 605 (728)
T ss_pred HhccceEeehhhhhhcCCCCcc
Confidence 4 68999999999998877644
No 83
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.50 E-value=9.5e-05 Score=73.52 Aligned_cols=335 Identities=17% Similarity=0.166 Sum_probs=194.6
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCC-CcchhhhhHhhhHHHHHHhcC-CCCchhhhHHHHHHhhhcCCH--HH
Q 009514 103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASP-CYLQDVGIKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKE--DM 178 (533)
Q Consensus 103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~a~~~L~~l~~~~~--~~ 178 (533)
.+..++.+++++.+.+|..|+.....+...-. ++...... .+-..|.+.++ +++++.-....++..+.+... ..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~--klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~m 682 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELA--KLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSM 682 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHH--HHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhccccc
Confidence 45667789999999999999888777654321 11111122 22234666676 456655444444443321110 01
Q ss_pred HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh-hchHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009514 179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS-LQVLKLVVDALAHDSSDVRSAACMCLRSV 257 (533)
Q Consensus 179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~-~~~l~~l~~~L~~~~~~v~~~a~~~L~~l 257 (533)
+- -..|.+|.|.-+|.+. +.++.++.+..++-+|...++... ..+ ..+-=-|++.|++-+.++|.+|...++.+
T Consensus 683 qp--Pi~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~~peyi~-~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~I 757 (975)
T COG5181 683 QP--PISGILPSLTPILRNK--HQKVVANTIALVGTICMNSPEYIG-VREWMRICFELVDSLKSWNKEIRRNATETFGCI 757 (975)
T ss_pred CC--chhhccccccHhhhhh--hHHHhhhHHHHHHHHHhcCcccCC-HHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence 11 1246789999988775 477888888888888877665311 000 01222366777788999999999999988
Q ss_pred hhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHH
Q 009514 258 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR 337 (533)
Q Consensus 258 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~ 337 (533)
++.. .-..++..|+.=|+..+-..+.-..-+|+-.+..+.+ -.++|.|+.=-..++..++...+.
T Consensus 758 s~ai--------GPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgp-------fsVlP~lm~dY~TPe~nVQnGvLk 822 (975)
T COG5181 758 SRAI--------GPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGP-------FSVLPTLMSDYETPEANVQNGVLK 822 (975)
T ss_pred Hhhc--------CHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCc-------hhhHHHHHhcccCchhHHHHhHHH
Confidence 8752 2223344444444433333333333344333322222 135677776666788889999999
Q ss_pred HHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc--hHHHHHhhcCchHHHHHHHhccCC
Q 009514 338 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN--SVEYIFAEDGIILDAVGRQLRIAS 415 (533)
Q Consensus 338 aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~~~~~~~~~~L~~~L~~~~ 415 (533)
+++.+...-++..++.+.. ..|.|-..|.+.|+--+.-+...+++++.+++. ..+..+. ++++|...+-. +
T Consensus 823 am~fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH----LlNllwpNIle-~ 895 (975)
T COG5181 823 AMCFMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH----LLNLLWPNILE-P 895 (975)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH----HHHHhhhhccC-C
Confidence 9998876554434444432 456677778899999999999999999988653 2223222 44555433333 5
Q ss_pred chhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 416 KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 416 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
.|.+....--.+-.++. ++.. .-++.-+.+-|-++...||+. -|...|...
T Consensus 896 sPhvi~~~~Eg~e~~~~--------~lg~------g~~m~Yv~qGLFHPs~~VRk~-ywtvyn~my 946 (975)
T COG5181 896 SPHVIQSFDEGMESFAT--------VLGS------GAMMKYVQQGLFHPSSTVRKR-YWTVYNIMY 946 (975)
T ss_pred CcHHHHHHHHHHHHHHH--------Hhcc------HHHHHHHHHhccCchHHHHHH-HHHHHhhhh
Confidence 56555433222222221 1110 122344555667788888854 566666653
No 84
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.49 E-value=2.9e-05 Score=76.99 Aligned_cols=212 Identities=13% Similarity=0.084 Sum_probs=150.4
Q ss_pred chHHHHHHhc-CCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514 230 QVLKLVVDAL-AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR 308 (533)
Q Consensus 230 ~~l~~l~~~L-~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 308 (533)
.+++.++..| .+++..++..++.++... .....+..|+..|.++++.++..++.+|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~------------~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------ 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALLAQ------------EDALDLRSVLAVLQAGPEGLCAGIQAALGWLGG------ 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHhcc------------CChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc------
Confidence 3688888888 467788887766665211 112238899999999999999999999975431
Q ss_pred HHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514 309 STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 309 ~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~ 388 (533)
.+..+.|..+++++++.+|..++.++..... + ..+.+..+|+++++.|+..++.+|+.+...
T Consensus 116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~-----------~~~~L~~~L~d~d~~Vra~A~raLG~l~~~ 177 (410)
T TIGR02270 116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH--D-----------PGPALEAALTHEDALVRAAALRALGELPRR 177 (410)
T ss_pred -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--C-----------hHHHHHHHhcCCCHHHHHHHHHHHHhhccc
Confidence 3456788899999999999999888876321 1 256888899999999999999999998754
Q ss_pred CcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhH
Q 009514 389 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL 468 (533)
Q Consensus 389 ~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v 468 (533)
. ..+.|...+.+ .++.|+..+++.+..+.. +. .+..+..+...+....
T Consensus 178 ~-------------a~~~L~~al~d-~~~~VR~aA~~al~~lG~--~~----------------A~~~l~~~~~~~g~~~ 225 (410)
T TIGR02270 178 L-------------SESTLRLYLRD-SDPEVRFAALEAGLLAGS--RL----------------AWGVCRRFQVLEGGPH 225 (410)
T ss_pred c-------------chHHHHHHHcC-CCHHHHHHHHHHHHHcCC--Hh----------------HHHHHHHHHhccCccH
Confidence 2 45666666666 899999999999977632 21 1234445444444444
Q ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514 469 RTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 469 ~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~ 526 (533)
+..+...+...- . ..+++.|..+++++ .+++.+.+||+.+-
T Consensus 226 ~~~l~~~lal~~------~---------~~a~~~L~~ll~d~--~vr~~a~~AlG~lg 266 (410)
T TIGR02270 226 RQRLLVLLAVAG------G---------PDAQAWLRELLQAA--ATRREALRAVGLVG 266 (410)
T ss_pred HHHHHHHHHhCC------c---------hhHHHHHHHHhcCh--hhHHHHHHHHHHcC
Confidence 434333333221 1 14678999999854 49999999998763
No 85
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=0.00044 Score=63.80 Aligned_cols=280 Identities=17% Similarity=0.117 Sum_probs=173.9
Q ss_pred ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCch-----hHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCCh
Q 009514 16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSL-----EQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNP 89 (533)
Q Consensus 16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~-----~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~ 89 (533)
++.+|.|-.-|..++..|+..+++.+..+-.+.+ .-..++..|..+.++..+.+ ++.|-.+|.+.+..++...+
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpa 160 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPA 160 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHH
Confidence 3556777777888999999999998887765433 23456789999999999887 67898999999999987655
Q ss_pred hhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--CCCchhhhHHHH
Q 009514 90 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFA 167 (533)
Q Consensus 90 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~a~~~ 167 (533)
.. ..+...+..+.+. +..+.--.+..+|......+..++..++. ........|.+..|..-++ ++.-++..+.+.
T Consensus 161 al-eaiFeSellDdlh-lrnlaakcndiaRvRVleLIieifSiSpe-saneckkSGLldlLeaElkGteDtLVianciEl 237 (524)
T KOG4413|consen 161 AL-EAIFESELLDDLH-LRNLAAKCNDIARVRVLELIIEIFSISPE-SANECKKSGLLDLLEAELKGTEDTLVIANCIEL 237 (524)
T ss_pred HH-HHhcccccCChHH-HhHHHhhhhhHHHHHHHHHHHHHHhcCHH-HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHH
Confidence 44 3343321111111 22222233445566666777777766653 3445567888888887777 344567788888
Q ss_pred HHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhh---hHhhhhh--chHHHHHHhcCCC
Q 009514 168 FSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC---RSRCLSL--QVLKLVVDALAHD 242 (533)
Q Consensus 168 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~---~~~~~~~--~~l~~l~~~L~~~ 242 (533)
...++.-.-. ++.+.+.|.++.+.+++...+.+|--+..++...+.+-++..-. ..++.+. -.+....+.+...
T Consensus 238 vteLaeteHg-reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn 316 (524)
T KOG4413|consen 238 VTELAETEHG-REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN 316 (524)
T ss_pred HHHHHHHhhh-hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC
Confidence 8888743222 23445678888899988766556655555666666655432111 1122221 2344555666778
Q ss_pred CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHH---HHH-hhcCCCHHHHHHHHHHHHHHhc
Q 009514 243 SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIP---LVR-LLDDTSTAVQVAALGAISNIVV 302 (533)
Q Consensus 243 ~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~---Lv~-lL~~~~~~v~~~a~~aL~nl~~ 302 (533)
++..+..|..+++.|..+.+.. . +....+.|. ++. ........-+..+..+|.+++.
T Consensus 317 DpdaieaAiDalGilGSnteGa--d-lllkTgppaaehllarafdqnahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 317 DPDAIEAAIDALGILGSNTEGA--D-LLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG 377 (524)
T ss_pred CchHHHHHHHHHHhccCCcchh--H-HHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence 9999999999999997664321 1 333333333 332 2222222345666677777664
No 86
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=1.5e-05 Score=83.55 Aligned_cols=224 Identities=18% Similarity=0.258 Sum_probs=164.6
Q ss_pred HHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhc
Q 009514 119 RLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQK 197 (533)
Q Consensus 119 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~ 197 (533)
|.-|+..|..+...++= ..+-...-|++|..++||+.+ .+++.--.++=+++..-++.+|.-.++.+|-.-+++.|..
T Consensus 487 RlRAL~LL~RFLDlGpW-AV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPW-AVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHHhccchh-hhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 55666666666665542 233345569999999999964 6677666777777766667788778887777777777766
Q ss_pred -CCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCC-CHHHHHHHHHHHHHHhhccccccchhhhhcCcH
Q 009514 198 -GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV 275 (533)
Q Consensus 198 -~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i 275 (533)
+..+++.|..|+..|+.+..+-+.-++...+.+.+...++.|.++ .+-+|...|-||+.|=.+.+..+.. -.+.+.-
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~-G~r~~Ah 644 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWS-GRRDNAH 644 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhc-cccccHH
Confidence 334557888899999999887655566677788999999999985 6889999999999996665555554 3567888
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcC----CchhHHHH------------HHhCcH---HHHHHhhcCCCHHHHHHHH
Q 009514 276 IPLVRLLDDTSTAVQVAALGAISNIVVD----FTTRRSTF------------IRLGGV---KLLVQLSKSMDSTIRLNAL 336 (533)
Q Consensus 276 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~----~~~~~~~~------------~~~~~i---~~L~~ll~~~~~~~~~~al 336 (533)
+.|..+|.++-++||.+|+.||+.+..+ +++..... ++..+. ..++.+++...+-+|....
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 9999999999999999999999999875 33322111 222222 2556667777788888888
Q ss_pred HHHHHhhc
Q 009514 337 RALRNLIF 344 (533)
Q Consensus 337 ~aL~~l~~ 344 (533)
-+|.++..
T Consensus 725 v~ls~~~~ 732 (1387)
T KOG1517|consen 725 VALSHFVV 732 (1387)
T ss_pred HHHHHHHH
Confidence 88887765
No 87
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.39 E-value=0.00017 Score=70.73 Aligned_cols=285 Identities=18% Similarity=0.181 Sum_probs=184.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCchhHH
Q 009514 232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRS 309 (533)
Q Consensus 232 l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~ 309 (533)
.+.+..++-+++..||.++.++++.+..+..... . +...++---++.-|. ..+..-|++|...++.+...... .
T Consensus 27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~-~-~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~-~- 102 (371)
T PF14664_consen 27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESLQ-I-LLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG-P- 102 (371)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHH-H-HHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC-c-
Confidence 3444434444449999999999999876633332 2 344554444555554 23556688999999888754221 1
Q ss_pred HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514 310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 389 (533)
Q Consensus 310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~ 389 (533)
..+..|++..++....++++..|..++.+|+.++...+ +-+.++||+..+.+.+-++..++.+..+.++.++...
T Consensus 103 ~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P----~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~- 177 (371)
T PF14664_consen 103 KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP----ELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDS- 177 (371)
T ss_pred ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH----HHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCC-
Confidence 22346889999999999999999999999999987432 5677899999999999887777888888888888765
Q ss_pred cchHHHHHhhcCchHHHHHHHhccC------Cch--hHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 009514 390 INSVEYIFAEDGIILDAVGRQLRIA------SKA--EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL 461 (533)
Q Consensus 390 ~~~~~~i~~~~~~~~~~L~~~L~~~------~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L 461 (533)
|...+++...-+ ++.+..-+.+. .+. +-...+..++..+...=+...-... .+...++.++..|
T Consensus 178 p~tR~yl~~~~d--L~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~------~~~~~lksLv~~L 249 (371)
T PF14664_consen 178 PRTRKYLRPGFD--LESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSM------NDFRGLKSLVDSL 249 (371)
T ss_pred cchhhhhcCCcc--HHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeec------CCchHHHHHHHHH
Confidence 333444433221 23332222221 122 2334444455444432111111111 1234567788888
Q ss_pred ccCChhHHHHHHHHHHhhcCCCCC---------------CcH----------------------------HH-----HHH
Q 009514 462 QSNDSRLRTAAVWAVLNLTCSSSP---------------GSS----------------------------GR-----LVK 493 (533)
Q Consensus 462 ~~~~~~v~~~a~~~L~~l~~~~~~---------------~~~----------------------------~~-----~~~ 493 (533)
..++.++|......+..+-.-+.. +.. ++ ...
T Consensus 250 ~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~i 329 (371)
T PF14664_consen 250 RLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAI 329 (371)
T ss_pred cCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHH
Confidence 888888888777777655432100 100 00 345
Q ss_pred HHHCCcHHHHHhhhcCC-CCcHHHHHHHHHHHHhhhcccCC
Q 009514 494 LHDAGIVSHVKNMVNDP-CLDVKLRVKTALEQFNSFDDSLV 533 (533)
Q Consensus 494 l~~~g~~~~L~~ll~~~-~~~v~~~a~~aL~~~~~~~~~~~ 533 (533)
+.+.|.++.|+++..+. +..+..+|.--|+.+...+++++
T Consensus 330 li~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL~la~~lL 370 (371)
T PF14664_consen 330 LIEAGLLEALVELIESSEDSSLSRKATLLLGELLHLASRLL 370 (371)
T ss_pred HHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHhcC
Confidence 78999999999999765 88999999999999999888764
No 88
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.37 E-value=0.00016 Score=70.99 Aligned_cols=246 Identities=23% Similarity=0.266 Sum_probs=166.3
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF 95 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~ 95 (533)
..++.++.++.+++..++..|+..+..... ...++.+..++.. ++.+|..|..+|+.+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------- 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------- 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC---------
Confidence 578999999999999999999888666542 4467888999986 77899999998887532
Q ss_pred ccccCcccHHHHHHHHh-cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCC-------------chh
Q 009514 96 VGPDTGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG-------------RVG 161 (533)
Q Consensus 96 ~~~~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-------------~~~ 161 (533)
...++.++..+. +++..+|..++..|..+.. ...++.++..+++.. .++
T Consensus 104 -----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~------------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r 166 (335)
T COG1413 104 -----PEAVPPLVELLENDENEGVRAAAARALGKLGD------------ERALDPLLEALQDEDSGSAAAALDAALLDVR 166 (335)
T ss_pred -----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc------------hhhhHHHHHHhccchhhhhhhhccchHHHHH
Confidence 235778888888 6999999999998886444 234777778777532 123
Q ss_pred hhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC
Q 009514 162 DEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH 241 (533)
Q Consensus 162 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~ 241 (533)
..+...+..+. +...++.+...+.+.. ..+|..+..+|+.+...+ ....+.+...+.+
T Consensus 167 ~~a~~~l~~~~-----------~~~~~~~l~~~l~~~~--~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~ 224 (335)
T COG1413 167 AAAAEALGELG-----------DPEAIPLLIELLEDED--ADVRRAAASALGQLGSEN---------VEAADLLVKALSD 224 (335)
T ss_pred HHHHHHHHHcC-----------ChhhhHHHHHHHhCch--HHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcC
Confidence 33333333321 1223566777666653 568888888888776543 2356778888888
Q ss_pred CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHH
Q 009514 242 DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLV 321 (533)
Q Consensus 242 ~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~ 321 (533)
+++.+|..++..+..+. .....+.+...+.+.++.++..+..++... .. ......+.
T Consensus 225 ~~~~vr~~~~~~l~~~~------------~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~----~~-------~~~~~~l~ 281 (335)
T COG1413 225 ESLEVRKAALLALGEIG------------DEEAVDALAKALEDEDVILALLAAAALGAL----DL-------AEAALPLL 281 (335)
T ss_pred CCHHHHHHHHHHhcccC------------cchhHHHHHHHHhccchHHHHHHHHHhccc----Cc-------hhhHHHHH
Confidence 89999988888875542 234566788888877777776666666411 00 12344555
Q ss_pred HhhcCCCHHHHHHHHHHHHHhh
Q 009514 322 QLSKSMDSTIRLNALRALRNLI 343 (533)
Q Consensus 322 ~ll~~~~~~~~~~al~aL~~l~ 343 (533)
..+.+....++..+..++....
T Consensus 282 ~~~~~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 282 LLLIDEANAVRLEAALALGQIG 303 (335)
T ss_pred HHhhcchhhHHHHHHHHHHhhc
Confidence 5566666666766666666553
No 89
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.00025 Score=65.39 Aligned_cols=378 Identities=11% Similarity=0.062 Sum_probs=209.2
Q ss_pred chHHHHHhhc-----CChHHHHHHHHHHHHHhcCCh--hhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhh
Q 009514 59 VLKRLTSLLG-----GSLIQRDASLESIATIFKNNP--EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRN 131 (533)
Q Consensus 59 ~i~~L~~lL~-----~~~~v~~~al~aL~~l~~~~~--~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 131 (533)
..|.+...|+ .+..|+.-++..++.+.++.+ ++ ..+....+.+.++.++..+..++..|-.+|...+..++.
T Consensus 79 lapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaV-seillvvNaeilklildcIggeddeVAkAAiesikrial 157 (524)
T KOG4413|consen 79 LAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAV-SEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL 157 (524)
T ss_pred hchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhH-HHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 3444444443 366899999999998876654 23 222222246778888888999999999999998888776
Q ss_pred cCCCcchhhhhHhhhHHHH--HHhcC-CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHH
Q 009514 132 ASPCYLQDVGIKTKLINNL--LELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGI 208 (533)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~L--~~ll~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a 208 (533)
.... ...+........+ ..+.. -++-++......+..+.+-.+........+|.+..|..-++.. .+.-++..+
T Consensus 158 fpaa--leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt-eDtLVianc 234 (524)
T KOG4413|consen 158 FPAA--LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT-EDTLVIANC 234 (524)
T ss_pred cHHH--HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC-cceeehhhH
Confidence 4311 1112222111111 11111 2334566777778888777777766677788888887767765 456677888
Q ss_pred HHHHHHhhccchhhhHhhhhhchHHHHHHhcCC--CCHHHHHHHHHHHHHHhhccccccchhhhhcCc-------HHHHH
Q 009514 209 LLALADMCSKLECCRSRCLSLQVLKLVVDALAH--DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETI-------VIPLV 279 (533)
Q Consensus 209 ~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~--~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~-------i~~Lv 279 (533)
+.....++. .+.-|..+.+.|.+..+...+.. .+|--+..+....+.+-.. .+... +.+... +...+
T Consensus 235 iElvteLae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgk-eaimd--vseeaicealiiaidgsf 310 (524)
T KOG4413|consen 235 IELVTELAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGK-EAIMD--VSEEAICEALIIAIDGSF 310 (524)
T ss_pred HHHHHHHHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc-hHHhh--cCHHHHHHHHHHHHHhhH
Confidence 888888874 34556667788999999888863 3343333333333332111 11100 111222 33345
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCc--HHHHH-HhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHH
Q 009514 280 RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG--VKLLV-QLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM 356 (533)
Q Consensus 280 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~--i~~L~-~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~ 356 (533)
++....|+..++.|..+++.+-.. .+.++.+.+.|- .+.++ +....+...-+..++.+|.+++...-+. .+++.
T Consensus 311 EmiEmnDpdaieaAiDalGilGSn-teGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlk-peqit- 387 (524)
T KOG4413|consen 311 EMIEMNDPDAIEAAIDALGILGSN-TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLK-PEQIT- 387 (524)
T ss_pred HhhhcCCchHHHHHHHHHHhccCC-cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCC-hhhcc-
Confidence 556677999999999999988753 455555555552 22222 2222222334566777777765321100 00111
Q ss_pred hhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChh
Q 009514 357 ELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES 436 (533)
Q Consensus 357 ~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~ 436 (533)
+...+.+..+.| ....+.... - .-++++...++. +.++++..+...+..++.. ++
T Consensus 388 ------------Dgkaeerlrcli-fdaaaqstk--------l--dPleLFlgilqQ-pfpEihcAalktfTAiaaq-PW 442 (524)
T KOG4413|consen 388 ------------DGKAEERLRCLI-FDAAAQSTK--------L--DPLELFLGILQQ-PFPEIHCAALKTFTAIAAQ-PW 442 (524)
T ss_pred ------------ccHHHHHHHHHH-HHHHhhccC--------C--ChHHHHHHHHcC-CChhhHHHHHHHHHHHHcC-cH
Confidence 111112222211 111111110 0 034555566665 8899999999999999875 45
Q ss_pred hHHHHHHHhhHhhhhhhHHHHHHhhccC---ChhHHHHHHHHHHh
Q 009514 437 HKEAVMDQLLLRAENKAQSCIIKFLQSN---DSRLRTAAVWAVLN 478 (533)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~lv~~L~~~---~~~v~~~a~~~L~~ 478 (533)
....++.. .+++..+...-... ..+.|.++|.+|.+
T Consensus 443 alkeifak------eefieiVtDastEhaKaakdAkYeccKAiae 481 (524)
T KOG4413|consen 443 ALKEIFAK------EEFIEIVTDASTEHAKAAKDAKYECCKAIAE 481 (524)
T ss_pred HHHHHhcC------ccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence 55556542 44443333322211 12455666666643
No 90
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0051 Score=62.66 Aligned_cols=333 Identities=18% Similarity=0.177 Sum_probs=182.4
Q ss_pred HHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccc
Q 009514 20 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGP 98 (533)
Q Consensus 20 ~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~ 98 (533)
..-++||+++..+-+.-.-..++.+-+.+.. +.+ -++..+..-|.+ ++-...-|+++++++... +.++.+
T Consensus 77 mEaV~LLss~kysEKqIGYl~is~L~n~n~d---l~k-lvin~iknDL~srn~~fv~LAL~~I~niG~r--e~~ea~--- 147 (938)
T KOG1077|consen 77 MEAVNLLSSNKYSEKQIGYLFISLLLNENSD---LMK-LVINSIKNDLSSRNPTFVCLALHCIANIGSR--EMAEAF--- 147 (938)
T ss_pred HHHHHHhhcCCccHHHHhHHHHHHHHhcchH---HHH-HHHHHHHhhhhcCCcHHHHHHHHHHHhhccH--hHHHHh---
Confidence 3456777766544333333333333322211 111 123344444544 566778899999998642 333333
Q ss_pred cCcccHHHHHHHHhcCC--hhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCC
Q 009514 99 DTGRTLSCIIEIVKDRF--ARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEK 175 (533)
Q Consensus 99 ~~~~~i~~l~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~ 175 (533)
...|+ +++-+++ .-|+..|+-||..+.+..++ .+--.+....++.+|+|. -.+-..+...+..++..+
T Consensus 148 --~~DI~---KlLvS~~~~~~vkqkaALclL~L~r~spD----l~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~ 218 (938)
T KOG1077|consen 148 --ADDIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPD----LVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKN 218 (938)
T ss_pred --hhhhH---HHHhCCcchHHHHHHHHHHHHHHHhcCcc----ccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcC
Confidence 23344 5555443 35788899999999987654 233457899999999964 455667777777777776
Q ss_pred HHHHHHHHHcCcHHHHHHhhhcCC-----------CCchhHHHHHHHHHHhhc-cchhhhHhhhhhchHHHHHHhcCCC-
Q 009514 176 EDMQKLAFEVNGVDKLYNHLQKGS-----------LHPRRFEGILLALADMCS-KLECCRSRCLSLQVLKLVVDALAHD- 242 (533)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~~L~~~~-----------~~~~~~~~a~~aL~~l~~-~~~~~~~~~~~~~~l~~l~~~L~~~- 242 (533)
++..+..+- -++..|..+..... +.|=.+...++.|...-. .++..|..+. .+++.++...+..
T Consensus 219 p~~yk~~~~-~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~ 295 (938)
T KOG1077|consen 219 PESYKTCLP-LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPP 295 (938)
T ss_pred CHHHhhhHH-HHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCc
Confidence 654332111 01122222111111 112245556666665522 1222222222 2444444444421
Q ss_pred -CHHHHH-----HHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCc
Q 009514 243 -SSDVRS-----AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG 316 (533)
Q Consensus 243 -~~~v~~-----~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~ 316 (533)
+..|+. +..--..+++.+.+... . .-...+..|-+++.+.++.+|+-|...++.|+.. ....+.+...
T Consensus 296 ~~k~vq~~na~naVLFeaI~l~~h~D~e~-~--ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~davK~h-- 369 (938)
T KOG1077|consen 296 KSKKVQHSNAKNAVLFEAISLAIHLDSEP-E--LLSRAVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDAVKKH-- 369 (938)
T ss_pred cccchHhhhhHHHHHHHHHHHHHHcCCcH-H--HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHHHHHH--
Confidence 112221 11111223333212111 1 1234566777888888888999999999888863 3333333332
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514 317 VKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 387 (533)
Q Consensus 317 i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~ 387 (533)
...++..++ ..|..+|+.|+..|..+|..+ +.+.+ ++-+++.|.+.|+.+++...-=+.-+++
T Consensus 370 ~d~Ii~sLkterDvSirrravDLLY~mcD~~---Nak~I-----V~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 370 QDTIINSLKTERDVSIRRRAVDLLYAMCDVS---NAKQI-----VAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHhchh---hHHHH-----HHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 677778888 678899999999999998633 33333 3446677777888888776654544543
No 91
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.33 E-value=0.00021 Score=70.21 Aligned_cols=185 Identities=23% Similarity=0.287 Sum_probs=136.5
Q ss_pred cHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccc
Q 009514 187 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA 266 (533)
Q Consensus 187 ~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~ 266 (533)
.++.+.+.+.+. ++.+|..+...++.+.. ...++.+..++.+.++.+|..|+.+|+.+
T Consensus 44 ~~~~~~~~l~~~--~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~--------- 101 (335)
T COG1413 44 AADELLKLLEDE--DLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGEL--------- 101 (335)
T ss_pred hHHHHHHHHcCC--CHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc---------
Confidence 456777777765 36678888877665432 23589999999999999999999977554
Q ss_pred hhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC------------HHHHH
Q 009514 267 GSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD------------STIRL 333 (533)
Q Consensus 267 ~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~------------~~~~~ 333 (533)
.....++.|++++. +++..++..|.++|+.+-.. ..+..++..+.+.. ..+|.
T Consensus 102 ---~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 102 ---GDPEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred ---CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 23456889999998 69999999999999877531 23666666666644 14566
Q ss_pred HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 009514 334 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI 413 (533)
Q Consensus 334 ~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~ 413 (533)
.+..++..+-. ....+.+..++.+.+..++..+..+|..+...... +...+.+.+.+
T Consensus 168 ~a~~~l~~~~~------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~~~-----------~~~~l~~~~~~ 224 (335)
T COG1413 168 AAAEALGELGD------------PEAIPLLIELLEDEDADVRRAAASALGQLGSENVE-----------AADLLVKALSD 224 (335)
T ss_pred HHHHHHHHcCC------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcchhh-----------HHHHHHHHhcC
Confidence 67777776632 12467888899999999999999999888765311 44556566666
Q ss_pred CCchhHHHHHHHHHHHhc
Q 009514 414 ASKAEIEIQGMYVLGNVA 431 (533)
Q Consensus 414 ~~~~~v~~~a~~~L~~l~ 431 (533)
++..++..++.+++.+-
T Consensus 225 -~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 225 -ESLEVRKAALLALGEIG 241 (335)
T ss_pred -CCHHHHHHHHHHhcccC
Confidence 88889999999888764
No 92
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=0.0037 Score=69.00 Aligned_cols=306 Identities=10% Similarity=0.084 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHhhccchhhhHhhhh--hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHh
Q 009514 204 RFEGILLALADMCSKLECCRSRCLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL 281 (533)
Q Consensus 204 ~~~~a~~aL~~l~~~~~~~~~~~~~--~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l 281 (533)
-+..|+.-++.++... +..+.. ...+|.|..+=.+++..||.+...+=..+....+..-.. +-..+..-|+.-
T Consensus 973 Sk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~--y~neIl~eLL~~ 1047 (1702)
T KOG0915|consen 973 SKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDE--YLNEILDELLVN 1047 (1702)
T ss_pred cccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHH--HHHHHHHHHHHh
Confidence 3455555555555322 111211 247888888888999999876655544444331211111 223445556666
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHH----HHhhcCCCHHHHHHH---HHHHHHhhccC-Ch---Hh
Q 009514 282 LDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLL----VQLSKSMDSTIRLNA---LRALRNLIFLA-ED---KC 350 (533)
Q Consensus 282 L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L----~~ll~~~~~~~~~~a---l~aL~~l~~~~-~~---~~ 350 (533)
|-+..++||+++|.||..|..+.+.- .+. +-+|.+ .+.+.+-.+.+|.+| +.+|+.++... ++ .-
T Consensus 1048 lt~kewRVReasclAL~dLl~g~~~~--~~~--e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1048 LTSKEWRVREASCLALADLLQGRPFD--QVK--EKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred ccchhHHHHHHHHHHHHHHHcCCChH--HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence 66789999999999999999865431 222 223443 344444456677764 45555554211 11 11
Q ss_pred HHHHHHhhcHHHHHh-hhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCc----------hhH
Q 009514 351 KEEIFMELTASLLAS-LICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK----------AEI 419 (533)
Q Consensus 351 ~~~i~~~~~~~~l~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~----------~~v 419 (533)
.+++++ ..+|.++. -+-+.-.+++.-++.++..++...+..+.--+ +.+++.|......-.+ ..+
T Consensus 1124 ~~~~l~-~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~---~~LIp~ll~~~s~lE~~vLnYls~r~~~~ 1199 (1702)
T KOG0915|consen 1124 GKEALD-IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF---PKLIPLLLNAYSELEPQVLNYLSLRLINI 1199 (1702)
T ss_pred HHHHHH-HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh---hHHHHHHHHHccccchHHHHHHHHhhhhh
Confidence 112221 22344433 12266789999999999999977554222111 1133333333322111 222
Q ss_pred HHHHHHHH-HHhccCChhhHHHHHHHhhHh----hhhhhHHHHHHhhccC-ChhHHHHHHHHHHhhcCCCCCCcHHHHHH
Q 009514 420 EIQGMYVL-GNVATGKESHKEAVMDQLLLR----AENKAQSCIIKFLQSN-DSRLRTAAVWAVLNLTCSSSPGSSGRLVK 493 (533)
Q Consensus 420 ~~~a~~~L-~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~lv~~L~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 493 (533)
..+++-.+ .+.+.+++ .-..++.+.++ .-.+++|.+.++++++ .-..|..|+..+.-|+..-.. ++ ..
T Consensus 1200 e~ealDt~R~s~akssp--mmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~---em-tP 1273 (1702)
T KOG0915|consen 1200 ETEALDTLRASAAKSSP--MMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGS---EM-TP 1273 (1702)
T ss_pred HHHHHHHHHHhhhcCCc--HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcc---cc-Cc
Confidence 33333333 22333332 11112211111 1246778899998865 456777888888877742111 11 00
Q ss_pred HHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514 494 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 494 l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~ 529 (533)
.. -..+..+..-.+|.++.+++.-+.|.+++..++
T Consensus 1274 ~s-gKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1274 YS-GKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred ch-hHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence 00 112355666667888889888888888887765
No 93
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=0.00039 Score=73.31 Aligned_cols=341 Identities=13% Similarity=0.072 Sum_probs=201.2
Q ss_pred cchHHHHhhhcC-CCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514 17 ENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQF 95 (533)
Q Consensus 17 ~~i~~L~~lL~~-~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~ 95 (533)
|..+.+..+|.+ .++.++..|..++.....+.+....++..|.+-.|+.+|.+.++.|+.+++.|..++....-.+.+.
T Consensus 1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS~PS~R~~vL~vLYAL~S~~~i~keA~ 1850 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHSQPSMRARVLDVLYALSSNGQIGKEAL 1850 (2235)
T ss_pred cccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhcChHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 455777777774 5788999999999999888888999999999999999999999999999999999986554444333
Q ss_pred ccccCcccHHHHHH-HHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHH-HHHhcCCCCchhhhHHHHHHhhhc
Q 009514 96 VGPDTGRTLSCIIE-IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINN-LLELLDDPGRVGDEASFAFSSLIA 173 (533)
Q Consensus 96 ~~~~~~~~i~~l~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~-L~~ll~~~~~~~~~a~~~L~~l~~ 173 (533)
. -|++.-+.. ++.+..+..|..|+..+..+.-..-.-.+-.+.--.++|. ++..+.|++ +.+..++..-.
T Consensus 1851 -~---hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P---EAaVH~fE~T~- 1922 (2235)
T KOG1789|consen 1851 -E---HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP---EAAVHMFESTS- 1922 (2235)
T ss_pred -h---cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH---HHHHHHHhccC-
Confidence 2 345555554 4567778999999999988764331100101111122222 233333333 11222221111
Q ss_pred CCHH------HHHHHHHcCcHHHH-HHhhhcCCCC----chhHHHHHH---HHHHhhccchhhhHhh------------h
Q 009514 174 EKED------MQKLAFEVNGVDKL-YNHLQKGSLH----PRRFEGILL---ALADMCSKLECCRSRC------------L 227 (533)
Q Consensus 174 ~~~~------~~~~~~~~~~l~~L-~~~L~~~~~~----~~~~~~a~~---aL~~l~~~~~~~~~~~------------~ 227 (533)
.+++ .+..+ ++.+... .++..+...+ +.+-|+.+- +=...+...--+|.-+ .
T Consensus 1923 EnPELiWn~~~r~kv--S~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~F 2000 (2235)
T KOG1789|consen 1923 ENPELIWNEVTRQKV--SGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLF 2000 (2235)
T ss_pred CCcccccCHhHHHHH--HHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHH
Confidence 1111 11100 0111111 1112221111 111111110 0000000000111111 1
Q ss_pred hhchHHHHHHhcCCCCH--HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 009514 228 SLQVLKLVVDALAHDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT 305 (533)
Q Consensus 228 ~~~~l~~l~~~L~~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~ 305 (533)
-.+.+..+.+++...++ ..-..-..++..+-+..+++... +-..|.+|.++..+...+..+-..|...|..|+. +.
T Consensus 2001 L~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADq-ip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n~ 2078 (2235)
T KOG1789|consen 2001 LTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQ-LPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-NQ 2078 (2235)
T ss_pred HHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhh-CCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-cc
Confidence 13567777788875443 23333345566666666776665 6778999999999976666666899999999985 45
Q ss_pred hhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCC
Q 009514 306 TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDP 370 (533)
Q Consensus 306 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~ 370 (533)
-+.+.+.....+..++..++..- ...--|+.+|..+......+.-.+.+..|.++.|+++|+..
T Consensus 2079 ~C~~AMA~l~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2079 FCCDAMAQLPCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred HHHHHHhccccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence 66778887777888887776543 33447888888886543334455667778899999999753
No 94
>PF05536 Neurochondrin: Neurochondrin
Probab=98.29 E-value=0.0067 Score=62.97 Aligned_cols=232 Identities=16% Similarity=0.111 Sum_probs=147.4
Q ss_pred hHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhh---hhhccccCcccHHHHHHHHhcC-------ChhhHHHHHHHHHH
Q 009514 60 LKRLTSLLGG-SLIQRDASLESIATIFKNNPEVV---SQFVGPDTGRTLSCIIEIVKDR-------FARTRLLASLCLIV 128 (533)
Q Consensus 60 i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~---~~~~~~~~~~~i~~l~~ll~~~-------~~~v~~~a~~~L~~ 128 (533)
++..+.+|++ .+.-|-.++-.+.+++...+... +.+. +.-+...+-++++++ ....+..|+..|..
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~---~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~ 83 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVF---EAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA 83 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHH---HhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence 4556677776 55667788888888877665322 2232 233456667777752 22346678888888
Q ss_pred hhhcCCCcchhhhhHhhhHHHHHHhcCC-CC-chhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHH
Q 009514 129 IRNASPCYLQDVGIKTKLINNLLELLDD-PG-RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFE 206 (533)
Q Consensus 129 l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~ 206 (533)
++.... ....----+-||.|++.+.. ++ .+..++.++|..++...+. ++.+.+.|+++.|++.+.+. +...+
T Consensus 84 f~~~~~--~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G-~~aLl~~g~v~~L~ei~~~~---~~~~E 157 (543)
T PF05536_consen 84 FCRDPE--LASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEG-AKALLESGAVPALCEIIPNQ---SFQME 157 (543)
T ss_pred HcCChh--hhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHh-HHHHHhcCCHHHHHHHHHhC---cchHH
Confidence 887432 11111123689999999974 34 6778999999999955555 56788999999999988774 55688
Q ss_pred HHHHHHHHhhccchhhhHhhhh-----hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccc-cchhhhhcCcHHHHHH
Q 009514 207 GILLALADMCSKLECCRSRCLS-----LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL-SAGSFMNETIVIPLVR 280 (533)
Q Consensus 207 ~a~~aL~~l~~~~~~~~~~~~~-----~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~-~~~~~~~~~~i~~Lv~ 280 (533)
.++..+.++...... +...+ ..+++.+-..+.......+...+..|..+-...+.. ... ....++.+.+..
T Consensus 158 ~Al~lL~~Lls~~~~--~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~-~~~~~W~~~l~~ 234 (543)
T PF05536_consen 158 IALNLLLNLLSRLGQ--KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLES-PPSPKWLSDLRK 234 (543)
T ss_pred HHHHHHHHHHHhcch--hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCcccccc-CChhhhHHHHHH
Confidence 999999988764321 11111 134555666666566667777888888875443211 111 234455555444
Q ss_pred ----hhc-CCCHHHHHHHHHHHHHHhcC
Q 009514 281 ----LLD-DTSTAVQVAALGAISNIVVD 303 (533)
Q Consensus 281 ----lL~-~~~~~v~~~a~~aL~nl~~~ 303 (533)
+|. ...++-|..+......+...
T Consensus 235 gl~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 235 GLRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 444 35677788887777777653
No 95
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=0.0033 Score=67.14 Aligned_cols=376 Identities=15% Similarity=0.156 Sum_probs=197.1
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCC---hhh
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNN---PEV 91 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~---~~~ 91 (533)
..+..|++.|++.+-.|+..||+.++++.+... ..+. ..++...+.++.. ++..--.++-+|+.++... |..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PELA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHHH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence 677889999999999999999999999886543 2222 2356666666653 3444456777778776532 111
Q ss_pred hhhhccccCcccHHHHHHHHh--------cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhc-CC-CCchh
Q 009514 92 VSQFVGPDTGRTLSCIIEIVK--------DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL-DD-PGRVG 161 (533)
Q Consensus 92 ~~~~~~~~~~~~i~~l~~ll~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll-~~-~~~~~ 161 (533)
. .+.+|.+++.+. +....||.+|+...+.+++.......+.+ -....+.|+... -| .-..|
T Consensus 418 l--------~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~-l~~L~s~LL~~AlFDrevncR 488 (1133)
T KOG1943|consen 418 L--------EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPV-LQSLASALLIVALFDREVNCR 488 (1133)
T ss_pred H--------HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHH-HHHHHHHHHHHHhcCchhhHh
Confidence 1 134455544332 23446899999999999987643211222 222333333222 23 34567
Q ss_pred hhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHh-cC
Q 009514 162 DEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA-LA 240 (533)
Q Consensus 162 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~-L~ 240 (533)
..|..++-.......+. --|++.+.. ...- ....|.++-..+..-....+.++.. ++..++.- +.
T Consensus 489 RAAsAAlqE~VGR~~n~------p~Gi~Lis~-~dy~--sV~~rsNcy~~l~~~ia~~~~y~~~-----~f~~L~t~Kv~ 554 (1133)
T KOG1943|consen 489 RAASAALQENVGRQGNF------PHGISLIST-IDYF--SVTNRSNCYLDLCVSIAEFSGYREP-----VFNHLLTKKVC 554 (1133)
T ss_pred HHHHHHHHHHhccCCCC------CCchhhhhh-cchh--hhhhhhhHHHHHhHHHHhhhhHHHH-----HHHHHHhcccc
Confidence 77776666554321111 012222111 1110 0112233222222111111222222 23333332 55
Q ss_pred CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH---HHHHH---h
Q 009514 241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR---STFIR---L 314 (533)
Q Consensus 241 ~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~---~~~~~---~ 314 (533)
+=+..+|+.++++|.+++...+. ......+|+++.....++..++.-+.-+.+.++....... ..+.+ +
T Consensus 555 HWd~~irelaa~aL~~Ls~~~pk-----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~ 629 (1133)
T KOG1943|consen 555 HWDVKIRELAAYALHKLSLTEPK-----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIA 629 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHhhHH-----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhh
Confidence 67889999999999999865332 3455788899988888888888766666666554221111 00111 1
Q ss_pred C---cHHHHHH-hhcCC-CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514 315 G---GVKLLVQ-LSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 389 (533)
Q Consensus 315 ~---~i~~L~~-ll~~~-~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~ 389 (533)
+ .++.+.. ..... ..-.+...+..+.++..... ......+.++-...+.+.+.+++ .++..+.+++..++..
T Consensus 630 ~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s~~-~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~- 706 (1133)
T KOG1943|consen 630 GLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLSKD-RLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST- 706 (1133)
T ss_pred hhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH-
Confidence 2 2333322 12222 13445566666666654332 22333444444455555665566 7888888998887743
Q ss_pred cchHHHHHhhcCc---hHHHHHHHhccCCchhHHHHHHHHHHHhc
Q 009514 390 INSVEYIFAEDGI---ILDAVGRQLRIASKAEIEIQGMYVLGNVA 431 (533)
Q Consensus 390 ~~~~~~i~~~~~~---~~~~L~~~L~~~~~~~v~~~a~~~L~~l~ 431 (533)
++..+.+. ++......+.+..+..++.....+++++.
T Consensus 707 -----y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp 746 (1133)
T KOG1943|consen 707 -----YVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLP 746 (1133)
T ss_pred -----HHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCc
Confidence 11111111 23333344444234556666666666554
No 96
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=98.28 E-value=0.00087 Score=65.05 Aligned_cols=465 Identities=15% Similarity=0.168 Sum_probs=236.0
Q ss_pred cchhHHHHHHHHHhhcCchhHHHHH----------hcCchHHHHHh-hcC-ChHHHHHHHHHHHHHhcCChhhhhhhccc
Q 009514 31 ENVSGLGASIISHSCKTSLEQKLLF----------DAGVLKRLTSL-LGG-SLIQRDASLESIATIFKNNPEVVSQFVGP 98 (533)
Q Consensus 31 ~~v~~~a~~~l~~~~~~~~~~~~i~----------~~g~i~~L~~l-L~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~ 98 (533)
..|+..|.-.+....+.-+ |..+. .+||-|.|+-+ |+. +++-|.-|+..++.+-+........-.+.
T Consensus 10 akvr~~al~~~~~~~~~~~-~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~ 88 (728)
T KOG4535|consen 10 AKVRQGALVCFLSTIKSIE-KKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDT 88 (728)
T ss_pred HHHHhhHHHHHHHHHhhhh-hhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 4566666666666553322 33222 26677776544 344 77888888999888877654432111111
Q ss_pred cCcc--c--------HHH----HH-HHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-CCCchhh
Q 009514 99 DTGR--T--------LSC----II-EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-DPGRVGD 162 (533)
Q Consensus 99 ~~~~--~--------i~~----l~-~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~ 162 (533)
.... . +.. ++ -+-....+.+-....+||.++....+.+..+...-..+...+-++++ .+++++.
T Consensus 89 ~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~v 168 (728)
T KOG4535|consen 89 SDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRV 168 (728)
T ss_pred CCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhh
Confidence 0000 1 111 11 13345566777788999999988776543222222334444445555 4566776
Q ss_pred hHHHHHHhhhcC---CHHHHHHHH----------HcCc----------HHHHHHhhhcCC--------------------
Q 009514 163 EASFAFSSLIAE---KEDMQKLAF----------EVNG----------VDKLYNHLQKGS-------------------- 199 (533)
Q Consensus 163 ~a~~~L~~l~~~---~~~~~~~~~----------~~~~----------l~~L~~~L~~~~-------------------- 199 (533)
.+.-++..+... .++.+-.+. ++-. -+.+.+ +..++
T Consensus 169 s~l~~~~~~v~t~~~~pei~~~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e-~~~~~~~~~~~~~~~i~~~~~i~~~ 247 (728)
T KOG4535|consen 169 SSLTLLGAIVSTHAPLPEVQLLLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEE-TSVSSPKGSSEPCWLIRLCISIVVL 247 (728)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHhcCCCccccccCCCCCChHHHHhcCCCchhhh-hccCCccCCCCCcceeeeeeeeeec
Confidence 666665555432 222211110 0000 011111 10000
Q ss_pred -------------------CCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 009514 200 -------------------LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRS 260 (533)
Q Consensus 200 -------------------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~ 260 (533)
.+..+|..++..|..++.+-.-.+..++ .....+...+.+..+.++..++.++..+...
T Consensus 248 ~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~--~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~ 325 (728)
T KOG4535|consen 248 PKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLM--ELGRVICKCMGEADPSIQLHGAKLLEELGTG 325 (728)
T ss_pred CCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHccCCCCChHHHHHHHHHHHHHHHH
Confidence 0011345555555555543222222222 2333344455677899999999999888543
Q ss_pred cc-----cccchhhhhcCcHHHHHHhh----------cCCCHHHHHHHHHHHHHHhcCCchh----HH---HHHHhCcHH
Q 009514 261 IK-----NLSAGSFMNETIVIPLVRLL----------DDTSTAVQVAALGAISNIVVDFTTR----RS---TFIRLGGVK 318 (533)
Q Consensus 261 ~~-----~~~~~~~~~~~~i~~Lv~lL----------~~~~~~v~~~a~~aL~nl~~~~~~~----~~---~~~~~~~i~ 318 (533)
.. ...+. -...+ ++..++ ++..+..+.++|.++.++....... ++ .++..|.
T Consensus 326 lv~~~~P~~~k~-~~q~~---~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC-- 399 (728)
T KOG4535|consen 326 LIQQYKPDSTKA-PDQRA---PFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGC-- 399 (728)
T ss_pred HhhhcCCCcccc-hhhhc---cHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcc--
Confidence 11 11111 01111 121111 1234567788888888886532211 10 1111111
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHH-HHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC----Ccc--
Q 009514 319 LLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE-EIFMELTASLLASLICDPEPSVQEQALALVRNLVDG----RIN-- 391 (533)
Q Consensus 319 ~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~-~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~----~~~-- 391 (533)
-.+++.-++..|++++.-..-+.+ .+. ...-......++..+.+..-..|+++.|+++|++.. .|.
T Consensus 400 -----~d~~~~lv~~aA~Ra~~VyVLHp~--lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~ 472 (728)
T KOG4535|consen 400 -----NDSKNRLVKAAASRALGVYVLHPC--LRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPD 472 (728)
T ss_pred -----cchHHHHHHHHHHhhceeEEeccc--hhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCch
Confidence 122233467778888877665433 332 233344566777788888889999999999999754 232
Q ss_pred -hHHHHHhhcCchHHHHHHH--hccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHH-hhccCChh
Q 009514 392 -SVEYIFAEDGIILDAVGRQ--LRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK-FLQSNDSR 467 (533)
Q Consensus 392 -~~~~i~~~~~~~~~~L~~~--L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~-~L~~~~~~ 467 (533)
..+.+.. ..+..+... +.+..+.+|+..+..+|+|+..- .+.+.+--+.-...+.+..++. ..-..+..
T Consensus 473 s~~eR~sg---~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~k 545 (728)
T KOG4535|consen 473 SFQERFSG---LLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMK 545 (728)
T ss_pred HHHHHHHH---HHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccc
Confidence 1222221 122222221 12224578999999999988742 2222210000000111122221 22345778
Q ss_pred HHHHHHHHHHhhcCCCCC--CcHHHHHHHHHCCcHHHHHhhhcC-CCCcHHHHHHHHHHH
Q 009514 468 LRTAAVWAVLNLTCSSSP--GSSGRLVKLHDAGIVSHVKNMVND-PCLDVKLRVKTALEQ 524 (533)
Q Consensus 468 v~~~a~~~L~~l~~~~~~--~~~~~~~~l~~~g~~~~L~~ll~~-~~~~v~~~a~~aL~~ 524 (533)
||=+||.+++||-.+..- .+.++ ...+++.|..|+.+ .+..+|.+|+.||..
T Consensus 546 V~WNaCya~gNLfkn~a~~lq~~~w-----A~~~F~~L~~Lv~~~~NFKVRi~AA~aL~v 600 (728)
T KOG4535|consen 546 VRWNACYAMGNLFKNPALPLQTAPW-----ASQAFNALTSLVTSCKNFKVRIRAAAALSV 600 (728)
T ss_pred cchHHHHHHHHhhcCccccccCCCc-----hHHHHHHHHHHHHHhccceEeehhhhhhcC
Confidence 999999999999963211 01111 11246788888754 677888899888854
No 97
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.21 E-value=3.1e-05 Score=71.55 Aligned_cols=187 Identities=19% Similarity=0.209 Sum_probs=118.0
Q ss_pred CCCCchhHHHHHHHHHHhhccc--hhhhHhhhhh--chHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcC
Q 009514 198 GSLHPRRFEGILLALADMCSKL--ECCRSRCLSL--QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNET 273 (533)
Q Consensus 198 ~~~~~~~~~~a~~aL~~l~~~~--~~~~~~~~~~--~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~ 273 (533)
.+.+|..|..++..|..+...+ ......+.+. ..+..+...+.+....+...|+.++..++...+..-.. ....
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~--~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEP--YADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHH--HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH--HHHH
Confidence 3357999999999999887655 2222222221 45567777788888889999999999998764443222 3456
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC---hHh
Q 009514 274 IVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE---DKC 350 (533)
Q Consensus 274 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~---~~~ 350 (533)
++|.|++.+.++..-++..|..+|..++.... ....+ ..+.+.....+.++.+|..++..+..+....+ +..
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l 169 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCS-YSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL 169 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-cHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence 78999999999999999999999999997544 11111 14566677888999999999999988865443 222
Q ss_pred HHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc
Q 009514 351 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 391 (533)
Q Consensus 351 ~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 391 (533)
.....-....+.+.+++.|++++||..|-.++..+....++
T Consensus 170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 22211134577888999999999999999888887654443
No 98
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.00086 Score=61.56 Aligned_cols=267 Identities=17% Similarity=0.155 Sum_probs=158.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514 232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF 311 (533)
Q Consensus 232 l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 311 (533)
+.-+++++.+.+|.||..|..-+..++.. +..... -.+...++.+.+++.+.++ ...|+.+|.|++... ..++.+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~-~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~-~l~~~l 79 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLS-KYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKE-ELRKKL 79 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhc-cchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhH-HHHHHH
Confidence 34578899999999999999988888654 111111 1345668889999987766 788999999999754 445566
Q ss_pred HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHH--HH---hhcHHHHHhhhCCCChh---HHHHHHHHHH
Q 009514 312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEI--FM---ELTASLLASLICDPEPS---VQEQALALVR 383 (533)
Q Consensus 312 ~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i--~~---~~~~~~l~~lL~~~~~~---v~~~a~~~L~ 383 (533)
++. .+..++..+.++....-...+..|.|++...+. ..... .. ..++..+++...+.+.. -.......+.
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~-~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDE-VAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchH-HHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 655 777788888777666677788899999874432 11111 11 13344444444333222 2233445556
Q ss_pred HhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHH-HHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHH----
Q 009514 384 NLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIE-IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCII---- 458 (533)
Q Consensus 384 ~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~-~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv---- 458 (533)
|++.... ....+........+.+. .+.+ .+..++ ...+.+|-|++-....|.. +++. ..+++|.+.
T Consensus 158 nls~~~~-gR~l~~~~k~~p~~kll-~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e-----~~~lLp~iLlPla 228 (353)
T KOG2973|consen 158 NLSQFEA-GRKLLLEPKRFPDQKLL-PFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDE-----SINLLPAILLPLA 228 (353)
T ss_pred HHhhhhh-hhhHhcchhhhhHhhhh-cccc-cchhhhccchHHHHHhhhccchhHHH-Hhcc-----hHHHHHHHHhhcC
Confidence 6654422 12222221111122222 1233 455554 4566777777654432222 2220 123333332
Q ss_pred -----------------Hhhc-----cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc-CCCCcHH
Q 009514 459 -----------------KFLQ-----SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN-DPCLDVK 515 (533)
Q Consensus 459 -----------------~~L~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~-~~~~~v~ 515 (533)
++|. .+++.+|+.-..+|..|+. +....+.++..|+.+.+..+=+ ..+++.+
T Consensus 229 gpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-----T~~GRe~lR~kgvYpilRElhk~e~ded~~ 303 (353)
T KOG2973|consen 229 GPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-----TRAGREVLRSKGVYPILRELHKWEEDEDIR 303 (353)
T ss_pred CccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-----hhHhHHHHHhcCchHHHHHHhcCCCcHHHH
Confidence 3443 3578899999999999995 5556688999999888887753 3456666
Q ss_pred HHHH
Q 009514 516 LRVK 519 (533)
Q Consensus 516 ~~a~ 519 (533)
+..-
T Consensus 304 ~ace 307 (353)
T KOG2973|consen 304 EACE 307 (353)
T ss_pred HHHH
Confidence 5433
No 99
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.18 E-value=5e-05 Score=60.59 Aligned_cols=120 Identities=16% Similarity=0.133 Sum_probs=102.3
Q ss_pred hcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChH
Q 009514 271 NETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 349 (533)
Q Consensus 271 ~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~ 349 (533)
..+.++.||.=.. ..+.+.++....-|.|++.++. +-..+.+.+++..++.-+..+++.+++.++..|+|+|- ++.
T Consensus 14 Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~-Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~ 90 (173)
T KOG4646|consen 14 RLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPI-NYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKT 90 (173)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcc-hHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChH
Confidence 3455666776554 5789999999999999997654 44578889999999999999999999999999999986 567
Q ss_pred hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchH
Q 009514 350 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV 393 (533)
Q Consensus 350 ~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 393 (533)
.++.+.+.++++.++..++++...+.-.++.++..++.+.....
T Consensus 91 n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r 134 (173)
T KOG4646|consen 91 NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTER 134 (173)
T ss_pred HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchh
Confidence 89999999999999999999999999999999999998765433
No 100
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.16 E-value=0.00013 Score=78.10 Aligned_cols=297 Identities=18% Similarity=0.112 Sum_probs=184.5
Q ss_pred HHHHHHHHhc-CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCC---HHH
Q 009514 104 LSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEK---EDM 178 (533)
Q Consensus 104 i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~---~~~ 178 (533)
++.+...+++ .....+.+|...|..++..-. ++..-..++|.++.++.|+ ..+|..|..+|+.+.... +..
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3444445554 345778999999999988543 3344567999999999975 689999998888775322 111
Q ss_pred HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009514 179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS 258 (533)
Q Consensus 179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls 258 (533)
...++-.-.+|.|-.++.+. ....+|-.-+..|+.|+.. .+ .+.+.+.-.....++++++.+- ..
T Consensus 500 daniF~eYlfP~L~~l~~d~-~~~~vRiayAsnla~LA~t--A~--rFle~~q~~~~~g~~n~~nset----------~~ 564 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDS-SAQIVRIAYASNLAQLAKT--AY--RFLELTQELRQAGMLNDPNSET----------AP 564 (1431)
T ss_pred cchhhHhhhhhhhHhhhccC-ccceehhhHHhhHHHHHHH--HH--HHHHHHHHHHhcccccCccccc----------cc
Confidence 12233334568888877664 3456777778888887731 12 2223222222333344443320 00
Q ss_pred hccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514 259 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA 338 (533)
Q Consensus 259 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~a 338 (533)
....+.... -...++-+..+.+|.++++-|+..-...|+-|+.-+...+. ..=+++.|+.+|++.+..+|.+-...
T Consensus 565 ~~~~~~~~~-~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ks---ND~iLshLiTfLNDkDw~LR~aFfds 640 (1431)
T KOG1240|consen 565 EQNYNTELQ-ALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKS---NDVILSHLITFLNDKDWRLRGAFFDS 640 (1431)
T ss_pred ccccchHHH-HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccc---ccchHHHHHHHhcCccHHHHHHHHhh
Confidence 000000000 01122333456677888889999989998888864443221 11257888999999988887765555
Q ss_pred HHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchh
Q 009514 339 LRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE 418 (533)
Q Consensus 339 L~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~ 418 (533)
+.-++...+ .+-+++..+|.|.+-|.|+++.|...|+++|..|+....-....+.+ +++....+|-+ |+.-
T Consensus 641 I~gvsi~VG----~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~----i~~~v~PlL~h-PN~W 711 (1431)
T KOG1240|consen 641 IVGVSIFVG----WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKD----ILQDVLPLLCH-PNLW 711 (1431)
T ss_pred ccceEEEEe----eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHH----HHHhhhhheeC-chHH
Confidence 544433222 23356677888999999999999999999999999764322223333 44555555555 8889
Q ss_pred HHHHHHHHHHHhcc
Q 009514 419 IEIQGMYVLGNVAT 432 (533)
Q Consensus 419 v~~~a~~~L~~l~~ 432 (533)
|+..++.+|..++.
T Consensus 712 IR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 712 IRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998877765
No 101
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=0.0058 Score=67.51 Aligned_cols=310 Identities=12% Similarity=0.072 Sum_probs=168.3
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhc---C-ChHHHHHHHHHHHHHhcCChhh-
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG---G-SLIQRDASLESIATIFKNNPEV- 91 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~---~-~~~v~~~al~aL~~l~~~~~~~- 91 (533)
.-||.|.+.==+++..||..-..+=..+..++.. +++.-.-+++-.+|. + .++||+++.-||..+....|..
T Consensus 998 kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~---~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~ 1074 (1702)
T KOG0915|consen 998 KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKK---VVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQ 1074 (1702)
T ss_pred HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHH---HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHH
Confidence 4567777776688888888666555555533332 344444445555554 3 7899999999999997665443
Q ss_pred -hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcC------CCcchhhhhHhhhHHHHHH--hcCCCCchhh
Q 009514 92 -VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNAS------PCYLQDVGIKTKLINNLLE--LLDDPGRVGD 162 (533)
Q Consensus 92 -~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~------~~~~~~~~~~~~~i~~L~~--ll~~~~~~~~ 162 (533)
.+.+ ......+++..+|-...||.+|-++...+++.- .+...-..+-..++|.|+. .+++-++++.
T Consensus 1075 ~~e~l-----pelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~ 1149 (1702)
T KOG0915|consen 1075 VKEKL-----PELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRR 1149 (1702)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHH
Confidence 2211 123334455566666678888766555544321 1111111223345665552 2334467888
Q ss_pred hHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHH----------HHHHHHH-Hhhccchhhh--Hhh---
Q 009514 163 EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFE----------GILLALA-DMCSKLECCR--SRC--- 226 (533)
Q Consensus 163 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~----------~a~~aL~-~l~~~~~~~~--~~~--- 226 (533)
-+..++..+++.....-+. .-...+|.|++....- .+..+-- .++..+. +.+...+... +..
T Consensus 1150 ~si~tl~dl~Kssg~~lkP-~~~~LIp~ll~~~s~l-E~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~ 1227 (1702)
T KOG0915|consen 1150 FSIGTLMDLAKSSGKELKP-HFPKLIPLLLNAYSEL-EPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINY 1227 (1702)
T ss_pred HHHHHHHHHHHhchhhhcc-hhhHHHHHHHHHcccc-chHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHh
Confidence 8999999998766543221 1223455566533222 2221111 1111111 1111111110 000
Q ss_pred ----hhhchHHHHHHhcCCC-CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 009514 227 ----LSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIV 301 (533)
Q Consensus 227 ----~~~~~l~~l~~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~ 301 (533)
+=...+|.+.++++.+ .-..|..++..+..++...+.--+ -.....+..++..+++.++.++.+.+.|.+.++
T Consensus 1228 iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt--P~sgKll~al~~g~~dRNesv~kafAsAmG~L~ 1305 (1702)
T KOG0915|consen 1228 IDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT--PYSGKLLRALFPGAKDRNESVRKAFASAMGYLA 1305 (1702)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC--cchhHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence 0124677777777754 456677777777777654222111 134456677777778899999999999999998
Q ss_pred cCCch-hHHHHHHhCcHHHHH-HhhcCCCHHHHHHHHHHHHHhhc
Q 009514 302 VDFTT-RRSTFIRLGGVKLLV-QLSKSMDSTIRLNALRALRNLIF 344 (533)
Q Consensus 302 ~~~~~-~~~~~~~~~~i~~L~-~ll~~~~~~~~~~al~aL~~l~~ 344 (533)
....+ ..+.. +..++ .++.. .+..+..++..+.++..
T Consensus 1306 k~Ss~dq~qKL-----ie~~l~~~l~k-~es~~siscatis~Ian 1344 (1702)
T KOG0915|consen 1306 KFSSPDQMQKL-----IETLLADLLGK-DESLKSISCATISNIAN 1344 (1702)
T ss_pred hcCChHHHHHH-----HHHHHHHHhcc-CCCccchhHHHHHHHHH
Confidence 75544 22333 33443 33333 22333556666666543
No 102
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=0.013 Score=60.67 Aligned_cols=272 Identities=18% Similarity=0.146 Sum_probs=135.0
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514 229 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR 308 (533)
Q Consensus 229 ~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 308 (533)
...++.+-..+.+....|...|++++.++....+ + .-...+..|--++.++...+|-+|...|..++...+..
T Consensus 244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r----~l~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~- 316 (865)
T KOG1078|consen 244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNS--R----ELAPAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA- 316 (865)
T ss_pred hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCH--h----hcchHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc-
Confidence 3467777778889999999999999998864411 1 11235666777788999999999999999988755432
Q ss_pred HHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514 309 STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 309 ~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~ 388 (533)
+.-.+ .-|-.+..+.+..+-..|..+|-. .........+... +...+.=+++...-+...++.+|......
T Consensus 317 --v~~cN--~elE~lItd~NrsIat~AITtLLK---TG~e~sv~rLm~q--I~~fv~disDeFKivvvdai~sLc~~fp~ 387 (865)
T KOG1078|consen 317 --VTVCN--LDLESLITDSNRSIATLAITTLLK---TGTESSVDRLMKQ--ISSFVSDISDEFKIVVVDAIRSLCLKFPR 387 (865)
T ss_pred --ccccc--hhHHhhhcccccchhHHHHHHHHH---hcchhHHHHHHHH--HHHHHHhccccceEEeHHHHHHHHhhccH
Confidence 11111 223334444443333333333322 1111122222111 11111111222222222333333222211
Q ss_pred Ccc----hHHHH-HhhcCc-----hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHH-Hhh----Hh--hhh
Q 009514 389 RIN----SVEYI-FAEDGI-----ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMD-QLL----LR--AEN 451 (533)
Q Consensus 389 ~~~----~~~~i-~~~~~~-----~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~----~~--~~~ 451 (533)
... ....+ .++||. +++.+...+.. .++-++.++.-|+.+...++........ +++ |. ...
T Consensus 388 k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~--~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Ps 465 (865)
T KOG1078|consen 388 KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEE--NPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPS 465 (865)
T ss_pred HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHh--CcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcc
Confidence 000 00111 112221 33444433332 3334444444444433322211000000 000 00 001
Q ss_pred hhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 452 KAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 452 ~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
..+.++.+...-.+..+|.+|..++.++... +.+. ...+.-.|.+.+.|++.++|++|..+|..+.+
T Consensus 466 kyir~iyNRviLEn~ivRaaAv~alaKfg~~-~~~l--------~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 466 KYIRFIYNRVILENAIVRAAAVSALAKFGAQ-DVVL--------LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC-CCCc--------cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence 2233334444445778999999999999942 2222 22345577888889999999999999988873
No 103
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=9.6e-05 Score=77.78 Aligned_cols=226 Identities=16% Similarity=0.151 Sum_probs=163.4
Q ss_pred hhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC
Q 009514 162 DEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH 241 (533)
Q Consensus 162 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~ 241 (533)
..|...|+++..-.+=.-.....-|..|-.+++|+++. .++|---+..=+.+..-++.++..+++.++-..+++.|.+
T Consensus 488 lRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a--~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~ 565 (1387)
T KOG1517|consen 488 LRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSA--RELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP 565 (1387)
T ss_pred HHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccch--HhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence 34555555554222211122333577899999888764 4555555544455555678888889988888888888887
Q ss_pred -C--CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcH
Q 009514 242 -D--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGGV 317 (533)
Q Consensus 242 -~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i 317 (533)
. +++-|..|+-.|..+.++..--... ..+.+.+...+..|.++ .+=++.-++-+|+.|-.++...+..=.+.++-
T Consensus 566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~a-cl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKA-CLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred cCCCCHHHHHHHHHHHHHHHcccchhHHH-hccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 2 4588888999999998875443333 56778888888888874 78899999999999999998888777778999
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccC---ChHhHHHH------------HHhhc---HHHHHhhhCCCChhHHHHHH
Q 009514 318 KLLVQLSKSMDSTIRLNALRALRNLIFLA---EDKCKEEI------------FMELT---ASLLASLICDPEPSVQEQAL 379 (533)
Q Consensus 318 ~~L~~ll~~~~~~~~~~al~aL~~l~~~~---~~~~~~~i------------~~~~~---~~~l~~lL~~~~~~v~~~a~ 379 (533)
+.|+.++.++-++||.+|+.||+.+..+. .++....+ .+... ...++.++++..+-++....
T Consensus 645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~ 724 (1387)
T KOG1517|consen 645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV 724 (1387)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence 99999999999999999999999998753 11111111 22222 24677788899999999988
Q ss_pred HHHHHhhcCCc
Q 009514 380 ALVRNLVDGRI 390 (533)
Q Consensus 380 ~~L~~l~~~~~ 390 (533)
-+|..+..+..
T Consensus 725 v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 725 VALSHFVVGYV 735 (1387)
T ss_pred HHHHHHHHhhH
Confidence 88888877643
No 104
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.13 E-value=0.00093 Score=65.60 Aligned_cols=238 Identities=14% Similarity=0.081 Sum_probs=155.7
Q ss_pred HhhhHHHHH-HhcCCCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchh
Q 009514 143 KTKLINNLL-ELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC 221 (533)
Q Consensus 143 ~~~~i~~L~-~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~ 221 (533)
.....+.+. -++.++..++..+.+++..+..+.... +.+.+.+.--.++.-|.....+..-|++|++.+..+......
T Consensus 23 ~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l-~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~ 101 (371)
T PF14664_consen 23 LSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESL-QILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG 101 (371)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHH-HHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence 334455554 356667788888889999888777665 445555544445555665544556689999998888754221
Q ss_pred hhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 009514 222 CRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIV 301 (533)
Q Consensus 222 ~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~ 301 (533)
. .....|++..++....+.+...+..+...|..++...+.. +...|++..|++.+-++..++.+..+.++..+.
T Consensus 102 ~--~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l----v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 102 P--KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL----VAECGGIRVLLRALIDGSFSISESLLDTLLYLL 175 (371)
T ss_pred c--ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH----HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence 1 1235688999999999999999999999999998875543 467899999999888776679999999999999
Q ss_pred cCCchhHHHHHHhCcHHHHHHhhcC-------CCH--HHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCCh
Q 009514 302 VDFTTRRSTFIRLGGVKLLVQLSKS-------MDS--TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP 372 (533)
Q Consensus 302 ~~~~~~~~~~~~~~~i~~L~~ll~~-------~~~--~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~ 372 (533)
.. +..++.+...--++.+..-..+ ++. +.-..+..++..+...=+.-.---.-+..++..++..|..+++
T Consensus 176 d~-p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~ 254 (371)
T PF14664_consen 176 DS-PRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNP 254 (371)
T ss_pred CC-cchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCH
Confidence 54 4455444432233343332211 122 2333444455444321000000000001357788889999999
Q ss_pred hHHHHHHHHHHHhhcC
Q 009514 373 SVQEQALALVRNLVDG 388 (533)
Q Consensus 373 ~v~~~a~~~L~~l~~~ 388 (533)
+++...+.++..+..-
T Consensus 255 ~ir~~Ildll~dllri 270 (371)
T PF14664_consen 255 EIRKAILDLLFDLLRI 270 (371)
T ss_pred HHHHHHHHHHHHHHCC
Confidence 9999999888887744
No 105
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00011 Score=73.68 Aligned_cols=290 Identities=14% Similarity=0.096 Sum_probs=171.8
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCC-----HHHHH
Q 009514 107 IIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEK-----EDMQK 180 (533)
Q Consensus 107 l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~-----~~~~~ 180 (533)
+..+..+.++.||.+|+..|..+..... .........++.++| +..++..|.+.+.-...-. .+..+
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~k-------L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFK-------LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhccccc-------ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 5556677777777777777776666211 112345566777775 5778888876665443222 11111
Q ss_pred HHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHH-HHHhh
Q 009514 181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCL-RSVSR 259 (533)
Q Consensus 181 ~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L-~~ls~ 259 (533)
.-..-.+..++++.+.+.+ ..+|..|..+|+.+..-+++.-.+. .-+.++.-+. .+.......+.+ .+--+
T Consensus 276 ~kl~D~aF~~vC~~v~D~s--l~VRV~AaK~lG~~~~vSee~i~QT----LdKKlms~lR--Rkr~ahkrpk~l~s~Gew 347 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRS--LSVRVEAAKALGEFEQVSEEIIQQT----LDKKLMSRLR--RKRTAHKRPKALYSSGEW 347 (823)
T ss_pred hhhHHHHHHHHHHHHhcCc--eeeeehHHHHhchHHHhHHHHHHHH----HHHHHhhhhh--hhhhcccchHHHHhcCCc
Confidence 1111234677788777764 7789999999988765444432222 2222222111 000001111111 11111
Q ss_pred cc-------------ccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC
Q 009514 260 SI-------------KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS 326 (533)
Q Consensus 260 ~~-------------~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~ 326 (533)
+. +..... ++..|.-..+|.-++++-.+|+.+|+.+++.|+...+.+. ...+.-|+.++++
T Consensus 348 SsGk~~~advpsee~d~~~~s-iI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA-----~~aldfLvDMfND 421 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEES-IIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFA-----VRALDFLVDMFND 421 (823)
T ss_pred ccCccccccCchhhccccccc-cccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHhcc
Confidence 10 011112 5667777889999999999999999999999998666543 2457889999999
Q ss_pred CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHH
Q 009514 327 MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA 406 (533)
Q Consensus 327 ~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~ 406 (533)
+...+|..|+.+|..++.+- .+.+.-++.++..|.+.+.++++..-.+|.+.-..+.+.+.. ++..
T Consensus 422 E~~~VRL~ai~aL~~Is~~l-------~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~i~m-------~v~~ 487 (823)
T KOG2259|consen 422 EIEVVRLKAIFALTMISVHL-------AIREEQLRQILESLEDRSVDVREALRELLKNARVSDLECIDM-------CVAH 487 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHh-------eecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHHHHH-------HHHH
Confidence 99999999999999886532 122334778888899999999998887777654443322222 3344
Q ss_pred HHHHhccCCchhHHHHHHHHHHHhccC
Q 009514 407 VGRQLRIASKAEIEIQGMYVLGNVATG 433 (533)
Q Consensus 407 L~~~L~~~~~~~v~~~a~~~L~~l~~~ 433 (533)
+.+.|...| +-+.....+++.+...
T Consensus 488 lL~~L~kyP--qDrd~i~~cm~~iGqn 512 (823)
T KOG2259|consen 488 LLKNLGKYP--QDRDEILRCMGRIGQN 512 (823)
T ss_pred HHHHhhhCC--CCcHHHHHHHHHHhcc
Confidence 444444332 2233444455555543
No 106
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.016 Score=59.18 Aligned_cols=336 Identities=10% Similarity=0.094 Sum_probs=195.0
Q ss_pred chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC---ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514 18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNNPEVVSQ 94 (533)
Q Consensus 18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~v~~~al~aL~~l~~~~~~~~~~ 94 (533)
++..+..=|.|.++.-...|..+++++.+ .+.++.+. +-+.++|.+ .+-|+.+|+-||-++...+|+...
T Consensus 112 vin~iknDL~srn~~fv~LAL~~I~niG~-re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~- 184 (938)
T KOG1077|consen 112 VINSIKNDLSSRNPTFVCLALHCIANIGS-REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN- 184 (938)
T ss_pred HHHHHHhhhhcCCcHHHHHHHHHHHhhcc-HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC-
Confidence 34445555667788888888889988873 33333332 234467754 457899998899999888887642
Q ss_pred hccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-----------C-------
Q 009514 95 FVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-----------D------- 156 (533)
Q Consensus 95 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-----------~------- 156 (533)
.++-...++.++.+.+-.|-.++...+-.++..++... .+++|.-+.-|. |
T Consensus 185 -----~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y------k~~~~~avs~L~riv~~~~t~~qdYTyy~vP 253 (938)
T KOG1077|consen 185 -----PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY------KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVP 253 (938)
T ss_pred -----hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH------hhhHHHHHHHHHHHHhhcccchhhceeecCC
Confidence 25678889999999999999999999888888776432 234444433331 1
Q ss_pred CCchhhhHHHHHHhhhcC-CHHHHHHHHHcCcHHHHHHhhhcCCCCchhH-----HHHHHHHHHhhccchhhhHhhhhhc
Q 009514 157 PGRVGDEASFAFSSLIAE-KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRF-----EGILLALADMCSKLECCRSRCLSLQ 230 (533)
Q Consensus 157 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~-----~~a~~aL~~l~~~~~~~~~~~~~~~ 230 (533)
.++++.+.+..|...... ++..+.... ..+..++...+.......++ .+.+.-.-+++.+-+.-...+ ..
T Consensus 254 ~PWL~vKl~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~ 329 (938)
T KOG1077|consen 254 APWLQVKLLRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SR 329 (938)
T ss_pred ChHHHHHHHHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HH
Confidence 134566677777666422 222222221 12333433333221111111 122222223332211111111 13
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHH
Q 009514 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRS 309 (533)
Q Consensus 231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~ 309 (533)
.+..|-++|.+....+|+-|..-++.|+.+ +..... + ......++..|+ +.|..++..|+..|..+++. ++.+
T Consensus 330 ~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss-~~s~da--v-K~h~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak- 403 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNIRYLALESMCKLASS-EFSIDA--V-KKHQDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAK- 403 (938)
T ss_pred HHHHHHHHhhcccccchhhhHHHHHHHHhc-cchHHH--H-HHHHHHHHHHhccccchHHHHHHHHHHHHHhch-hhHH-
Confidence 567788888999999999999999888766 221111 1 123667888888 78999999999999999853 2322
Q ss_pred HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHH-------------HHHHhhcHHHHHhhhCCCChhHHH
Q 009514 310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE-------------EIFMELTASLLASLICDPEPSVQE 376 (533)
Q Consensus 310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~-------------~i~~~~~~~~l~~lL~~~~~~v~~ 376 (533)
.++..+++++...+..+|+.-.--+.=|++.-.++... ...++..+.+++++.- .++++|.
T Consensus 404 -----~IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVv-Nnedlq~ 477 (938)
T KOG1077|consen 404 -----QIVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVV-NNEDLQG 477 (938)
T ss_pred -----HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEe-cchhhhH
Confidence 23556777777777777766543333333211111110 1112233444444332 3567888
Q ss_pred HHHHHHHHhhc
Q 009514 377 QALALVRNLVD 387 (533)
Q Consensus 377 ~a~~~L~~l~~ 387 (533)
.|+..+....+
T Consensus 478 yaak~~fe~Lq 488 (938)
T KOG1077|consen 478 YAAKRLFEYLQ 488 (938)
T ss_pred HHHHHHHHHHh
Confidence 88876665543
No 107
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.07 E-value=0.00023 Score=71.49 Aligned_cols=220 Identities=18% Similarity=0.184 Sum_probs=139.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcc----hhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHH
Q 009514 104 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYL----QDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDM 178 (533)
Q Consensus 104 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~ 178 (533)
....++++++.+..||.+|++.++-+.+..+.+. .+.-....++-.+-..+.| .-.++.+|+.+|..+-.-.++.
T Consensus 236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~ 315 (823)
T KOG2259|consen 236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEI 315 (823)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHH
Confidence 3445678999999999999999988876653211 1111222344445555555 3467889998888775444443
Q ss_pred HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHh--hc-----------cchhhhHhhhhhchHHHHHHhcCCCCHH
Q 009514 179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADM--CS-----------KLECCRSRCLSLQVLKLVVDALAHDSSD 245 (533)
Q Consensus 179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l--~~-----------~~~~~~~~~~~~~~l~~l~~~L~~~~~~ 245 (533)
-..-.+.. ++.-+...- ... +..-...++- ++ .+++-...++..|.-..++.-|.++..+
T Consensus 316 i~QTLdKK----lms~lRRkr-~ah--krpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~E 388 (823)
T KOG2259|consen 316 IQQTLDKK----LMSRLRRKR-TAH--KRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYE 388 (823)
T ss_pred HHHHHHHH----Hhhhhhhhh-hcc--cchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHH
Confidence 22222222 221111100 000 0000000110 00 0111123466778888899999999999
Q ss_pred HHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc
Q 009514 246 VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK 325 (533)
Q Consensus 246 v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~ 325 (533)
||.+|...++.|+.+.+.. ....+.-|+.+++++..+|+..|..+|..++.. ..++..-++.+..-+.
T Consensus 389 VR~AAV~Sl~~La~ssP~F------A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~ 456 (823)
T KOG2259|consen 389 VRRAAVASLCSLATSSPGF------AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLE 456 (823)
T ss_pred HHHHHHHHHHHHHcCCCCc------HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHH
Confidence 9999999999998764432 235678899999999999999999999998853 2234456788888888
Q ss_pred CCCHHHHHHHHHHHHHh
Q 009514 326 SMDSTIRLNALRALRNL 342 (533)
Q Consensus 326 ~~~~~~~~~al~aL~~l 342 (533)
+.++++|++.-..|++.
T Consensus 457 D~s~dvRe~l~elL~~~ 473 (823)
T KOG2259|consen 457 DRSVDVREALRELLKNA 473 (823)
T ss_pred hcCHHHHHHHHHHHHhc
Confidence 89999999888888765
No 108
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.07 E-value=2.2e-05 Score=60.24 Aligned_cols=86 Identities=24% Similarity=0.314 Sum_probs=70.0
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 009514 232 LKLVVDAL-AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST 310 (533)
Q Consensus 232 l~~l~~~L-~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 310 (533)
+|.|++.| +++++.+|..++++|+.+ .....++.|+++++++++.++..|+++|+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL------------GDPEAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC------------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc------------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57888988 899999999999999732 23467899999999999999999999998763
Q ss_pred HHHhCcHHHHHHhhcCCC-HHHHHHHHHHHH
Q 009514 311 FIRLGGVKLLVQLSKSMD-STIRLNALRALR 340 (533)
Q Consensus 311 ~~~~~~i~~L~~ll~~~~-~~~~~~al~aL~ 340 (533)
....++.|.+++.+++ ..+|..|.++|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2357889999888754 556888988874
No 109
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.06 E-value=1.7e-05 Score=54.60 Aligned_cols=55 Identities=27% Similarity=0.477 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhh
Q 009514 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNL 479 (533)
Q Consensus 417 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l 479 (533)
+.++..|+++|++++.......+... ..+++.|+.+|+++++.||.+|+|+|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~--------~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL--------PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH--------HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH--------HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999887766666555 57889999999999999999999999875
No 110
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.05 E-value=4.6e-05 Score=60.79 Aligned_cols=135 Identities=15% Similarity=0.065 Sum_probs=106.4
Q ss_pred CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccccc
Q 009514 186 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 265 (533)
Q Consensus 186 ~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~ 265 (533)
+.+..|++-.... .+.+.+++...-|++++ .+|.+...+.+.+++..++..|..++..+..-+...|+|++-...+.
T Consensus 16 ~Ylq~LV~efq~t-t~~eakeqv~ANLANFA-YDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~- 92 (173)
T KOG4646|consen 16 EYLQHLVDEFQTT-TNIEAKEQVTANLANFA-YDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA- 92 (173)
T ss_pred HHHHHHHHHHHHh-ccHHHHHHHHHHHHhhc-cCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH-
Confidence 3466677766655 45778888888888887 46777788889999999999999999999999999999999774433
Q ss_pred chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh
Q 009514 266 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS 324 (533)
Q Consensus 266 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll 324 (533)
.. +.+++++|.++..+.++...+..+++.++..+.......+..+....++..+.+.-
T Consensus 93 ~~-I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~ 150 (173)
T KOG4646|consen 93 KF-IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR 150 (173)
T ss_pred HH-HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence 23 68899999999999999999999999999999876655566666544444444443
No 111
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.026 Score=60.66 Aligned_cols=313 Identities=14% Similarity=0.140 Sum_probs=178.9
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHH
Q 009514 103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQK 180 (533)
Q Consensus 103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~ 180 (533)
.+..++..+++.+..+|-.|++.+..+....|.. .....+...++++. +++..+.-++-+|+.++...--...
T Consensus 342 vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~-----Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 342 VIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPE-----LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHccCcHH-----HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 3444556778999999999999999988866532 22335555566665 4455666888888888743211100
Q ss_pred HHHHcCcHHHHHHhhhcCC------CCchhHHHHHHHHHHhhccch-hhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHH
Q 009514 181 LAFEVNGVDKLYNHLQKGS------LHPRRFEGILLALADMCSKLE-CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMC 253 (533)
Q Consensus 181 ~~~~~~~l~~L~~~L~~~~------~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~ 253 (533)
.. ...+|.+++-|.-.. .-..+|.+|+..+++++...+ ..-+-+...=.--.+...+.+..-..|.+|..+
T Consensus 417 ~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 417 LL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred HH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 00 123455555443321 124588988888888876322 111112221122234445667788899999888
Q ss_pred HHHH-hhccccccch------------------------hhh-hcCcHHHHHHh-----hcCCCHHHHHHHHHHHHHHhc
Q 009514 254 LRSV-SRSIKNLSAG------------------------SFM-NETIVIPLVRL-----LDDTSTAVQVAALGAISNIVV 302 (533)
Q Consensus 254 L~~l-s~~~~~~~~~------------------------~~~-~~~~i~~Lv~l-----L~~~~~~v~~~a~~aL~nl~~ 302 (533)
+-.. .|. ++...+ .+. -.|...+++.- +.+-|..+++.++++|.+|+.
T Consensus 495 lqE~VGR~-~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 495 LQENVGRQ-GNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred HHHHhccC-CCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 8654 442 222111 011 13444555443 346699999999999999885
Q ss_pred CCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHH--HHhh---cHHHHHhhhCC-----C-C
Q 009514 303 DFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEI--FMEL---TASLLASLICD-----P-E 371 (533)
Q Consensus 303 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i--~~~~---~~~~l~~lL~~-----~-~ 371 (533)
-.+ +....+.+++++...-+.+...|....-+.+.++...- .+...+ ..+. ++..++.-+.+ . .
T Consensus 574 ~~p----k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~-~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~ 648 (1133)
T KOG1943|consen 574 TEP----KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALR-KLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQG 648 (1133)
T ss_pred hhH----HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhh-hhhhhhhhhHHHHhhhhhhhccHHHHHHhccchH
Confidence 333 34446788999988888888888877777766654211 111000 0111 11111211111 1 1
Q ss_pred hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514 372 PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 372 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 432 (533)
.-++...+..+..+..+.+......+.++ ....+.+.+.+ ++ .++..+.++++.+..
T Consensus 649 ~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~--~~~ll~~~l~~-~n-~i~~~av~av~~l~s 705 (1133)
T KOG1943|consen 649 TLMRQATLKFIEQLSLSKDRLFQDFVIEN--WQMLLAQNLTL-PN-QIRDAAVSAVSDLVS 705 (1133)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHH--HHHHHHHhhcc-hH-HHHHHHHHHHHHHHH
Confidence 34455566777777776654444444444 44455555544 44 788999999888774
No 112
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.03 E-value=1.3e-05 Score=51.33 Aligned_cols=40 Identities=13% Similarity=0.145 Sum_probs=37.2
Q ss_pred hhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 009514 220 ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR 259 (533)
Q Consensus 220 ~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~ 259 (533)
++.+..+++.|++|.|+++|++++++++..|+++|+|+++
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 5678889999999999999999999999999999999974
No 113
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.98 E-value=0.0015 Score=70.32 Aligned_cols=295 Identities=17% Similarity=0.123 Sum_probs=183.2
Q ss_pred HHHHhhcC--ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCC-C-cc
Q 009514 62 RLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP-C-YL 137 (533)
Q Consensus 62 ~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-~-~~ 137 (533)
.+..-+++ ....+.+|+..|..++...++- ..+ .+.+|-++.++.++..+||..|+..|..+...-. . +.
T Consensus 426 ~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de-~~L-----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 426 VLTSCIRALKTIQTKLAALELLQELSTYIDDE-VKL-----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHhhhcchH-HHH-----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 33344443 4567888998888876543332 112 4678889999999999999999999887653321 1 11
Q ss_pred hhhhhHhhhHHHHHHhcCCC--CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHh
Q 009514 138 QDVGIKTKLINNLLELLDDP--GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADM 215 (533)
Q Consensus 138 ~~~~~~~~~i~~L~~ll~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l 215 (533)
...+.-+-++|.|-.++.|+ ..++..-+..|+.+|.---.+. +.+--.....++...+ +. .....
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFl----e~~q~~~~~g~~n~~n-se--------t~~~~ 566 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFL----ELTQELRQAGMLNDPN-SE--------TAPEQ 566 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHH----HHHHHHHhcccccCcc-cc--------ccccc
Confidence 11233455889898888863 3466666677777763221111 1110001111122221 10 00000
Q ss_pred hccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHH
Q 009514 216 CSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALG 295 (533)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~ 295 (533)
..+ .. ....-.++-..++.++.++++.||.+-...|.-|+.-....+ .+.-+++.|+..|++.|+.+|.+-..
T Consensus 567 -~~~-~~-~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k----sND~iLshLiTfLNDkDw~LR~aFfd 639 (1431)
T KOG1240|consen 567 -NYN-TE-LQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK----SNDVILSHLITFLNDKDWRLRGAFFD 639 (1431)
T ss_pred -ccc-hH-HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc----cccchHHHHHHHhcCccHHHHHHHHh
Confidence 001 11 111122344556778888888999988888887775433222 12345788999999999999998888
Q ss_pred HHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHH
Q 009514 296 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQ 375 (533)
Q Consensus 296 aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~ 375 (533)
.|..++..... .-.+...+|.|.+-+.+..+.|...|+.+|.-|+... .-.|..+.+ .++-...+|.+++.-||
T Consensus 640 sI~gvsi~VG~---rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~-ll~K~~v~~--i~~~v~PlL~hPN~WIR 713 (1431)
T KOG1240|consen 640 SIVGVSIFVGW---RSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG-LLRKPAVKD--ILQDVLPLLCHPNLWIR 713 (1431)
T ss_pred hccceEEEEee---eeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc-ccchHHHHH--HHHhhhhheeCchHHHH
Confidence 88766643222 1234567788888899999999999999999998633 212333332 35667788899999999
Q ss_pred HHHHHHHHHhhcC
Q 009514 376 EQALALVRNLVDG 388 (533)
Q Consensus 376 ~~a~~~L~~l~~~ 388 (533)
..++..+......
T Consensus 714 ~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 714 RAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHHHHhh
Confidence 9999998877654
No 114
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.98 E-value=1.7e-05 Score=50.70 Aligned_cols=39 Identities=36% Similarity=0.473 Sum_probs=36.2
Q ss_pred chhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514 305 TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 343 (533)
Q Consensus 305 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~ 343 (533)
+++++.+++.|+++.|+++++++++.++.+|+|+|+|++
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 456778999999999999999999999999999999986
No 115
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0061 Score=56.15 Aligned_cols=274 Identities=15% Similarity=0.126 Sum_probs=164.5
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHH
Q 009514 103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLA 182 (533)
Q Consensus 103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 182 (533)
-+..++.++.+.+|.||..|+.-+..+.... .+. -.--....++.+.+++.+... -..|+.++.|++.+. ..++.+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~~-~~~-~~~~~~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~~-~l~~~l 79 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGRG-LQS-LSKYSEALLKDLTQLLKDLDP-AEPAATALVNLSQKE-ELRKKL 79 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhccccc-hhh-hccchhhhHHHHHHHccCccc-ccHHHHHHHHHHhhH-HHHHHH
Confidence 3567889999999999999998888776541 111 111234678889999987655 457888999998654 455665
Q ss_pred HHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh------hchHHHHHHhcCCC-CH-HHHHHHHHHH
Q 009514 183 FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS------LQVLKLVVDALAHD-SS-DVRSAACMCL 254 (533)
Q Consensus 183 ~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~------~~~l~~l~~~L~~~-~~-~v~~~a~~~L 254 (533)
.+. .+..++..+.+.. .......+..|.|++..+......... .|.......+.+.+ +. .--...+-.+
T Consensus 80 l~~-~~k~l~~~~~~p~--~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf 156 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQ--SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF 156 (353)
T ss_pred HHH-HHHHHHHHhcCcc--cchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence 554 6677777776653 335677788899999876554433221 34445555555543 21 1123345567
Q ss_pred HHHhhccccccchhhhhcCcHH--HHHHhhcCCCHHHH-HHHHHHHHHHhcCCchhHHHHHH--hCcHHHHH--------
Q 009514 255 RSVSRSIKNLSAGSFMNETIVI--PLVRLLDDTSTAVQ-VAALGAISNIVVDFTTRRSTFIR--LGGVKLLV-------- 321 (533)
Q Consensus 255 ~~ls~~~~~~~~~~~~~~~~i~--~Lv~lL~~~~~~v~-~~a~~aL~nl~~~~~~~~~~~~~--~~~i~~L~-------- 321 (533)
.|+++. +..|.- +.+....+ .+..+-. ++..+| .-.++.|.|.+.+..... .++. .+.++.++
T Consensus 157 ~nls~~-~~gR~l-~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~-~lL~e~~~lLp~iLlPlagpee 232 (353)
T KOG2973|consen 157 ANLSQF-EAGRKL-LLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHE-VLLDESINLLPAILLPLAGPEE 232 (353)
T ss_pred HHHhhh-hhhhhH-hcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHH-HHhcchHHHHHHHHhhcCCccc
Confidence 777765 322322 34444322 2333333 455554 455678888876543322 2322 12222222
Q ss_pred -------------Hhhc-----CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC-CCChhHHHHHHHHH
Q 009514 322 -------------QLSK-----SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALV 382 (533)
Q Consensus 322 -------------~ll~-----~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L 382 (533)
+++. .+++.+|..-+.+|--||.. ...|+.+.+.|+++.+-.+=+ .+++++++.+-...
T Consensus 233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vv 310 (353)
T KOG2973|consen 233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVV 310 (353)
T ss_pred cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHH
Confidence 2232 23688999999999888753 347888888887776665554 45677777666555
Q ss_pred HHhhcCC
Q 009514 383 RNLVDGR 389 (533)
Q Consensus 383 ~~l~~~~ 389 (533)
.-+....
T Consensus 311 q~Lv~~e 317 (353)
T KOG2973|consen 311 QMLVRLE 317 (353)
T ss_pred HHHHhcc
Confidence 5555443
No 116
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.0046 Score=65.68 Aligned_cols=363 Identities=15% Similarity=0.117 Sum_probs=195.0
Q ss_pred HHHHHHHHHhhhcCCCcc---hhhhhHhhhHHHHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHh
Q 009514 120 LLASLCLIVIRNASPCYL---QDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNH 194 (533)
Q Consensus 120 ~~a~~~L~~l~~~~~~~~---~~~~~~~~~i~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~ 194 (533)
..+..+|.|+...+++-. -.+..--|.++.+...+. .++.++.-|.+++..+..+.+. -..+..+|.+..|+.+
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~C-v~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKEC-VTDLATCNVLTTLLTL 1821 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHH-HHHHHhhhHHHHHHHH
Confidence 356888889888776310 011122366777777776 3567888899888877655544 4667788888999998
Q ss_pred hhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHhhcc-ccccchhhhhc
Q 009514 195 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSI-KNLSAGSFMNE 272 (533)
Q Consensus 195 L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~-~~~~~v~~~a~~~L~~ls~~~-~~~~~~~~~~~ 272 (533)
|.+. |..|+.++..|.+|++. ++..+...+.|++..+..++- +.++.+|.+++..+..+.... ...+-. +.--
T Consensus 1822 LHS~---PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~-ITL~ 1896 (2235)
T KOG1789|consen 1822 LHSQ---PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVT-ITLI 1896 (2235)
T ss_pred HhcC---hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCcee-eehH
Confidence 8876 67899999999999975 466677788898888887764 567899999999999996541 111111 1111
Q ss_pred CcHHH-HHHhhcCCCHHHHHHHHHHHHHHhcCCchhHH--HHH--HhCcHHHHH-HhhcC--CCHHHH----HH------
Q 009514 273 TIVIP-LVRLLDDTSTAVQVAALGAISNIVVDFTTRRS--TFI--RLGGVKLLV-QLSKS--MDSTIR----LN------ 334 (533)
Q Consensus 273 ~~i~~-Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~--~~~--~~~~i~~L~-~ll~~--~~~~~~----~~------ 334 (533)
.++|. ++..+++. | +++..++-.-. +.++... ... -++.|...+ ++.+. .++.+. +.
T Consensus 1897 kFLP~~f~d~~RD~-P---EAaVH~fE~T~-EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~E 1971 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDS-P---EAAVHMFESTS-ENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSE 1971 (2235)
T ss_pred HhchHHHHHHHhcC-H---HHHHHHHhccC-CCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhh
Confidence 22222 33333332 2 22333332111 1111100 000 011122111 11110 011000 00
Q ss_pred -----HHHH--HHHhhccCChH---hHHHHHHhhcHHHHHhhhCCCChh--HHHHHHHHHHHhhcCCcchHHHHHhhcCc
Q 009514 335 -----ALRA--LRNLIFLAEDK---CKEEIFMELTASLLASLICDPEPS--VQEQALALVRNLVDGRINSVEYIFAEDGI 402 (533)
Q Consensus 335 -----al~a--L~~l~~~~~~~---~~~~i~~~~~~~~l~~lL~~~~~~--v~~~a~~~L~~l~~~~~~~~~~i~~~~~~ 402 (533)
++.. +..+.. +|. -+.+.+-.+.++.+++++..++++ ...-.-.++..+....|...+++=.-|
T Consensus 1972 a~~E~aVGG~~~R~Fi~--~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LG-- 2047 (2235)
T KOG1789|consen 1972 ADKECAVGGSINREFVV--GPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLG-- 2047 (2235)
T ss_pred hccCcccchhhhHHHhh--CCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCcc--
Confidence 0000 000100 010 011222234466677777644332 222223344555555665444443333
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCC
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS 482 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~ 482 (533)
.++.++.-+.. .+..+...|+++|..++.+. -+.+.+-. -.....++..+...-. .---|+.+|-.+..
T Consensus 2048 ylPK~~~Am~~-~n~s~P~SaiRVlH~Lsen~-~C~~AMA~-------l~~i~~~m~~mkK~~~-~~GLA~EalkR~~~- 2116 (2235)
T KOG1789|consen 2048 YLPKFCTAMCL-QNTSAPRSAIRVLHELSENQ-FCCDAMAQ-------LPCIDGIMKSMKKQPS-LMGLAAEALKRLMK- 2116 (2235)
T ss_pred chHHHHHHHHh-cCCcCcHHHHHHHHHHhhcc-HHHHHHhc-------cccchhhHHHHHhcch-HHHHHHHHHHHHHH-
Confidence 56666665555 55666688999999998643 24444332 1222345555553322 11256666666663
Q ss_pred CCCCcHHHHHHHHHCCcHHHHHhhhcCC
Q 009514 483 SSPGSSGRLVKLHDAGIVSHVKNMVNDP 510 (533)
Q Consensus 483 ~~~~~~~~~~~l~~~g~~~~L~~ll~~~ 510 (533)
....+-.....+.|.+|.|.+||+..
T Consensus 2117 --r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2117 --RNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred --HhHHHHHHHHhccCcHHHHHHHhccc
Confidence 23344566778999999999999743
No 117
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.92 E-value=0.066 Score=59.67 Aligned_cols=109 Identities=20% Similarity=0.186 Sum_probs=78.5
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHH-HHhhcCChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRL-TSLLGGSLIQRDASLESIATIFKNNPEVVSQF 95 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L-~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~ 95 (533)
+-+..++..|+.+...+|..|.++|+.+...+... +....+-..+ .++.+++..||++|+.-+|+....+++....
T Consensus 816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v--L~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q- 892 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSV--LSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ- 892 (1692)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh--hcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH-
Confidence 56788889999899999999999999988654431 1111111122 2334457799999999999987777766432
Q ss_pred ccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCC
Q 009514 96 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 135 (533)
Q Consensus 96 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 135 (533)
....+..-+.++...||..+.+.++.++...+.
T Consensus 893 -------yY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 893 -------YYDQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred -------HHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 345566777788889999999999999887654
No 118
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.91 E-value=3.2e-05 Score=59.37 Aligned_cols=87 Identities=24% Similarity=0.253 Sum_probs=69.8
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHH
Q 009514 317 VKLLVQLS-KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEY 395 (533)
Q Consensus 317 i~~L~~ll-~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 395 (533)
|+.|++.+ +++++.+|..++++|+.+-. ...++.+.++++++++.++..++++|+.+.. ++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--~~---- 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD------------PEAIPALIELLKDEDPMVRRAAARALGRIGD--PE---- 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH------------HHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--HH----
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--HH----
Confidence 57888888 78899999999999996521 1348889999999999999999999998742 11
Q ss_pred HHhhcCchHHHHHHHhccCCchhHHHHHHHHHH
Q 009514 396 IFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG 428 (533)
Q Consensus 396 i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~ 428 (533)
.++.|.+.+.++.+..++..|+.+|+
T Consensus 63 -------~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 -------AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -------THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 67888888888666778999988875
No 119
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.91 E-value=0.019 Score=58.10 Aligned_cols=347 Identities=15% Similarity=0.080 Sum_probs=188.7
Q ss_pred hHHHHhhhcCCCc---chhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhh-
Q 009514 19 MEFLLSLLNNESE---NVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVV- 92 (533)
Q Consensus 19 i~~L~~lL~~~~~---~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~- 92 (533)
+|.|+..|.+++. .-.+....+|+.+|..+.--..+.- ..+..+-....+ +...-...+.++.++........
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~ 79 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQ 79 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccc
Confidence 3678888887665 5567889999999976664322222 233333333332 33455566677776643332221
Q ss_pred -hhhccccCcccHHHHHHHHhc-----C--ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC---------
Q 009514 93 -SQFVGPDTGRTLSCIIEIVKD-----R--FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--------- 155 (533)
Q Consensus 93 -~~~~~~~~~~~i~~l~~ll~~-----~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--------- 155 (533)
.......+...++.++++.-. . +..+-..+...+..+.+..+...+ ...+..+.+++-
T Consensus 80 ~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q-----~~~~~~~~~lf~~~~~~~~~~ 154 (415)
T PF12460_consen 80 FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQ-----QEILDELYSLFLSPKSFSPFQ 154 (415)
T ss_pred cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHHccccccCCCC
Confidence 000000012256666664421 1 123334445555555554432222 223444444332
Q ss_pred -CCCc---hhh----hHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhh
Q 009514 156 -DPGR---VGD----EASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL 227 (533)
Q Consensus 156 -~~~~---~~~----~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~ 227 (533)
+... .+. -...++..+-.+..-- .....+..++++..+. .++..+..+...++.+...-+.. . .
T Consensus 155 ~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~-~~~~~~~~~~~~la~LvNK~~~~--~-~ 226 (415)
T PF12460_consen 155 PSSSTISEQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSS-EDEFSRLAALQLLASLVNKWPDD--D-D 226 (415)
T ss_pred ccccccccccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCCCh--h-h
Confidence 1110 111 1223333333222110 0012456777765555 34667888888888877541110 0 1
Q ss_pred hhchHHHHHHhc-CCCCHHH----HHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 009514 228 SLQVLKLVVDAL-AHDSSDV----RSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV 302 (533)
Q Consensus 228 ~~~~l~~l~~~L-~~~~~~v----~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 302 (533)
-...+..+...+ ...+... -....|+...+..... -.....+..|++++.+ +++...++.++.-+..
T Consensus 227 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~------~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~ 298 (415)
T PF12460_consen 227 LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH------PLATELLDKLLELLSS--PELGQQAAKAFGILLS 298 (415)
T ss_pred HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC------chHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhc
Confidence 112333343333 2223333 3334444444432201 1223567778888876 7888999999998887
Q ss_pred CCchh-------------HHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHh--hcHHHHHhhh
Q 009514 303 DFTTR-------------RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME--LTASLLASLI 367 (533)
Q Consensus 303 ~~~~~-------------~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~--~~~~~l~~lL 367 (533)
+.+.. ++.++ ...+|.+++-.+..+...|.+-+.||.++..+.+. ..+..+ ..+|.+++-|
T Consensus 299 d~~~~l~~~~~a~vklLykQR~F-~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~---~vl~~~l~~LlPLLlqsL 374 (415)
T PF12460_consen 299 DSDDVLNKENHANVKLLYKQRFF-TQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPK---SVLLPELPTLLPLLLQSL 374 (415)
T ss_pred CcHHhcCccccchhhhHHhHHHH-HHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHHHHHh
Confidence 63332 33344 35788888888877777899999999999987663 222222 2578888989
Q ss_pred CCCChhHHHHHHHHHHHhhcCCcc
Q 009514 368 CDPEPSVQEQALALVRNLVDGRIN 391 (533)
Q Consensus 368 ~~~~~~v~~~a~~~L~~l~~~~~~ 391 (533)
+.+|.+++..++.+|..+....++
T Consensus 375 ~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 375 SLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCHH
Confidence 999999999999999999877643
No 120
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0035 Score=64.29 Aligned_cols=307 Identities=16% Similarity=0.160 Sum_probs=187.6
Q ss_pred HHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcH
Q 009514 110 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGV 188 (533)
Q Consensus 110 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l 188 (533)
-+++++..+|-...++|+.+-. .-+-...+|.+...|.. .+.+|..|..++..+-...+.. --++.
T Consensus 107 DLQHPNEyiRG~TLRFLckLkE--------~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L-----~pDap 173 (948)
T KOG1058|consen 107 DLQHPNEYIRGSTLRFLCKLKE--------PELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHL-----IPDAP 173 (948)
T ss_pred hccCchHhhcchhhhhhhhcCc--------HHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhh-----cCChH
Confidence 4568888999988888776433 22345678888888874 5678888887777664432211 01233
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc---CCCCHHHHHHHHHHHHHHhhcccccc
Q 009514 189 DKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL---AHDSSDVRSAACMCLRSVSRSIKNLS 265 (533)
Q Consensus 189 ~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L---~~~~~~v~~~a~~~L~~ls~~~~~~~ 265 (533)
+.+-+.|... .++..+.+|+..|.... ++. .+..+.... .+-++.++......++..+...+.
T Consensus 174 eLi~~fL~~e-~DpsCkRNAFi~L~~~D---~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~-- 239 (948)
T KOG1058|consen 174 ELIESFLLTE-QDPSCKRNAFLMLFTTD---PER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA-- 239 (948)
T ss_pred HHHHHHHHhc-cCchhHHHHHHHHHhcC---HHH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH--
Confidence 3344555554 46777777776665432 221 233333332 233567777777888877764332
Q ss_pred chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhc
Q 009514 266 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIF 344 (533)
Q Consensus 266 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~ 344 (533)
....++..+..+|.++++.+..+|+.+|.+++.++...+ -+...+++++-. ++..++.-.+--|..+..
T Consensus 240 ----~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk------~Aa~~~i~l~~kesdnnvklIvldrl~~l~~ 309 (948)
T KOG1058|consen 240 ----EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALK------AAASTYIDLLVKESDNNVKLIVLDRLSELKA 309 (948)
T ss_pred ----HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHH------HHHHHHHHHHHhccCcchhhhhHHHHHHHhh
Confidence 235678899999999999999999999999986543322 123455555433 344444444444444421
Q ss_pred cCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc------CCchh
Q 009514 345 LAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI------ASKAE 418 (533)
Q Consensus 345 ~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~------~~~~~ 418 (533)
..+.+++.. +--++++|+++|-+++.+++.....+..... ++. ++..|.+-+.. ..+.+
T Consensus 310 -----~~~~il~~l-~mDvLrvLss~dldvr~Ktldi~ldLvssrN--ved-------iv~~Lkke~~kT~~~e~d~~~~ 374 (948)
T KOG1058|consen 310 -----LHEKILQGL-IMDVLRVLSSPDLDVRSKTLDIALDLVSSRN--VED-------IVQFLKKEVMKTHNEESDDNGK 374 (948)
T ss_pred -----hhHHHHHHH-HHHHHHHcCcccccHHHHHHHHHHhhhhhcc--HHH-------HHHHHHHHHHhccccccccchH
Confidence 223444433 4557789999999999999998888876542 222 33344433321 12234
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514 419 IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 419 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~ 480 (533)
.+..-..+|...+...++.. +.+++.+++++.+.++..-......+....
T Consensus 375 yRqlLiktih~cav~Fp~~a------------atvV~~ll~fisD~N~~aas~vl~FvrE~i 424 (948)
T KOG1058|consen 375 YRQLLIKTIHACAVKFPEVA------------ATVVSLLLDFISDSNEAAASDVLMFVREAI 424 (948)
T ss_pred HHHHHHHHHHHHhhcChHHH------------HHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 56677778877777666443 355688899999888755555554444444
No 121
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.0021 Score=57.82 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=66.2
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc--CChhHHHHHHHHHHhhc
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS--NDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~--~~~~v~~~a~~~L~~l~ 480 (533)
.+..+..-+.. .+.-.+..++++++++-.. -.+|.|.+.|.+ .++.||..|+.+|+.++
T Consensus 188 aI~al~~~l~~-~SalfrhEvAfVfGQl~s~------------------~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa 248 (289)
T KOG0567|consen 188 AINALIDGLAD-DSALFRHEVAFVFGQLQSP------------------AAIPSLIKVLLDETEHPMVRHEAAEALGAIA 248 (289)
T ss_pred HHHHHHHhccc-chHHHHHHHHHHHhhccch------------------hhhHHHHHHHHhhhcchHHHHHHHHHHHhhc
Confidence 34445555555 4677889999999987531 234677777764 46789999999999998
Q ss_pred CCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHH
Q 009514 481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 525 (533)
Q Consensus 481 ~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~ 525 (533)
. ...++.|.+.+.|+.+-|++.+..||.-.
T Consensus 249 ~---------------e~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 249 D---------------EDCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred C---------------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3 12467899999999999999988888755
No 122
>PF05536 Neurochondrin: Neurochondrin
Probab=97.85 E-value=0.0027 Score=65.80 Aligned_cols=238 Identities=15% Similarity=0.077 Sum_probs=150.9
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhh---hHhhhhhchHHHHHHhcCC-------CCHHHHHHHHHHHHHH
Q 009514 188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC---RSRCLSLQVLKLVVDALAH-------DSSDVRSAACMCLRSV 257 (533)
Q Consensus 188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~---~~~~~~~~~l~~l~~~L~~-------~~~~v~~~a~~~L~~l 257 (533)
+...+++|+... ..-|-.++..+..+...++.. ++.+.+.=+.+.+-++|.. +....+.-|...|..+
T Consensus 7 l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 7 LEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 556677777664 345677787888887655432 3456677677888888876 3356778888999999
Q ss_pred hhccccccchhhhhcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHH
Q 009514 258 SRSIKNLSAGSFMNETIVIPLVRLLDDTST-AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL 336 (533)
Q Consensus 258 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al 336 (533)
+.. ++.... -.-.+-+|.|++.+.+.+. ++...|..+|..++ ..+..++.+++.|+++.|.+.+.+ .+.....++
T Consensus 85 ~~~-~~~a~~-~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 85 CRD-PELASS-PQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred cCC-hhhhcC-HHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 885 443322 1223668999999976655 99999999999999 567888899999999999998887 455688888
Q ss_pred HHHHHhhccCChHhHHH--HHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcch-HHHHHhh--cCchHHHHHHHh
Q 009514 337 RALRNLIFLAEDKCKEE--IFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS-VEYIFAE--DGIILDAVGRQL 411 (533)
Q Consensus 337 ~aL~~l~~~~~~~~~~~--i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~--~~~~~~~L~~~L 411 (533)
.++.+++...+.+.-.. -.-...++.+.+.........+-..+..|..+....+.. ....... ...+...+..+|
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 89988876443211100 000112344444444444455666677777776554211 0000000 001445555666
Q ss_pred ccCCchhHHHHHHHHHHHhc
Q 009514 412 RIASKAEIEIQGMYVLGNVA 431 (533)
Q Consensus 412 ~~~~~~~v~~~a~~~L~~l~ 431 (533)
++...++-+..++.....+.
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll 260 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLL 260 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHH
Confidence 66455666666655555444
No 123
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.79 E-value=0.0069 Score=58.48 Aligned_cols=220 Identities=12% Similarity=0.122 Sum_probs=156.8
Q ss_pred cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCC----C----cchhhhhHhhhHHHHHHhcCC-CCch------hhhHH
Q 009514 101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP----C----YLQDVGIKTKLINNLLELLDD-PGRV------GDEAS 165 (533)
Q Consensus 101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~----~----~~~~~~~~~~~i~~L~~ll~~-~~~~------~~~a~ 165 (533)
..+++.++.++.+++.++-.+.+..|..+....- . ...+..++.++++.|++.+.. +..+ .....
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 4689999999999999999999999999875431 1 235667888999999999862 2222 24556
Q ss_pred HHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC-----
Q 009514 166 FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA----- 240 (533)
Q Consensus 166 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~----- 240 (533)
.++.|+..-.+.....+++.|.+..|++-+...........+|...++-+..++.+.+..+....++..+++-+.
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 777788888888778888888888877755544223345778888888777777777777777788888777664
Q ss_pred CC----CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc--hhHHHHHHh
Q 009514 241 HD----SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT--TRRSTFIRL 314 (533)
Q Consensus 241 ~~----~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~--~~~~~~~~~ 314 (533)
++ ..+..+.--.||+.+-....+ +.. |....+++-..-+++. ....+..+..+|-....++. ++...+.+.
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~n-r~~-Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~ 360 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPAN-RER-FLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEI 360 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhh-hhh-hhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 21 235667777788777666333 333 6666677654445554 55668889999988887665 667778888
Q ss_pred CcHHHHHHh
Q 009514 315 GGVKLLVQL 323 (533)
Q Consensus 315 ~~i~~L~~l 323 (533)
.++..+..+
T Consensus 361 lGLrtiF~~ 369 (536)
T KOG2734|consen 361 LGLRTIFPL 369 (536)
T ss_pred HhHHHHHHH
Confidence 888877754
No 124
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.78 E-value=0.0012 Score=60.89 Aligned_cols=180 Identities=14% Similarity=0.177 Sum_probs=112.9
Q ss_pred cCCCHHHHHHHHHHHHHHhcCC--chhHHHHHH--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhh
Q 009514 283 DDTSTAVQVAALGAISNIVVDF--TTRRSTFIR--LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL 358 (533)
Q Consensus 283 ~~~~~~v~~~a~~aL~nl~~~~--~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~ 358 (533)
.+.+++.+..|+.-|..++.+. ......+.+ ...+..+...+.+....+...|+.++..++...+..... .-..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~--~~~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEP--YADI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHH--HHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHH--HHHH
Confidence 5679999999999999998755 222222221 144556667777777788899999999988654432222 2334
Q ss_pred cHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCch-HHHHHHHhccCCchhHHHHHHHHHHHhccCCh--
Q 009514 359 TASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII-LDAVGRQLRIASKAEIEIQGMYVLGNVATGKE-- 435 (533)
Q Consensus 359 ~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~-~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~-- 435 (533)
.++.|++.+.+++.-+++.|..+|..++...+- ... + ...+.....+ .++.++..++..+..+....+
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~-~~~-------~~~~~l~~~~~~-Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSY-SPK-------ILLEILSQGLKS-KNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H---H-------HHHHHHHHHTT--S-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCc-HHH-------HHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHccch
Confidence 578899999999999999999999999876540 000 2 3444444444 889999999998888876433
Q ss_pred -hhHH--HHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 436 -SHKE--AVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 436 -~~~~--~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
.... ..+ ..+++.+...+.+++++||..|-.++..+..
T Consensus 166 ~~~l~~~~~~--------~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 166 SSVLQKSAFL--------KQLVKALVKLLSDADPEVREAARECLWALYS 206 (228)
T ss_dssp -GGG--HHHH--------HHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HhhhcccchH--------HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 1111 112 3577899999999999999999999888863
No 125
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=0.011 Score=58.12 Aligned_cols=262 Identities=16% Similarity=0.134 Sum_probs=141.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514 233 KLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL-LDDTSTAVQVAALGAISNIVVDFTTRRSTF 311 (533)
Q Consensus 233 ~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 311 (533)
..+..-..+++..+|..|+.+|.+++...+..... .....+..++.- ..+.+.+|+.++..+|..+...-.. .-
T Consensus 261 ~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~t--h~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~---~~ 335 (533)
T KOG2032|consen 261 LSLANKATDPSAKSRGMACRGLGNTASGAPDKVRT--HKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASN---DD 335 (533)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHH--hHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhh---cc
Confidence 33333445778899999999999998764433332 223344455554 4456789999999999877642111 11
Q ss_pred HHh---CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHH--hhcHHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514 312 IRL---GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM--ELTASLLASLICDPEPSVQEQALALVRNLV 386 (533)
Q Consensus 312 ~~~---~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~--~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~ 386 (533)
++. ++.-.+..+..+.++++|.+|...++.|....+...++...+ .+....++-.|.++++.+-..+=..++.+.
T Consensus 336 l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~ 415 (533)
T KOG2032|consen 336 LESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCY 415 (533)
T ss_pred hhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcC
Confidence 112 344456677888999999999988888875444445544443 123344555567888877554444443332
Q ss_pred cCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHH---HHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc
Q 009514 387 DGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGM---YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS 463 (533)
Q Consensus 387 ~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~---~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~ 463 (533)
.+- ..++ ....+.+.+.. .. .+-.+. |++ .+..-.++.. . -+.....-++++
T Consensus 416 p~l------~rke---~~~~~q~~ld~--~~-~~~q~Fyn~~c~-~L~~i~~d~l-~-----------~~~t~~~~~f~s 470 (533)
T KOG2032|consen 416 PNL------VRKE---LYHLFQESLDT--DM-ARFQAFYNQWCI-QLNHIHPDIL-M-----------LLLTEDQHIFSS 470 (533)
T ss_pred chh------HHHH---HHHHHhhhhHH--hH-HHHHHHHHHHHH-HHhhhCHHHH-H-----------HHHHhchhheec
Confidence 221 0000 11111111111 00 000000 000 0000011000 0 011222334455
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 464 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 464 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
..+.+|..+...-.++. +.-+++.....--.-....|..+..++.++++..+..|++.++.
T Consensus 471 swe~vr~aavl~t~~~v---d~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 471 SWEQVREAAVLKTTRSV---DSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred chHHHHHHHHHHHHHHH---HHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 56677777766665555 22333333333333345778888899999999999999998764
No 126
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.007 Score=62.20 Aligned_cols=322 Identities=12% Similarity=0.133 Sum_probs=180.0
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-C-CCchhhhHHHHHHhhhcCCHHHHH
Q 009514 103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-D-PGRVGDEASFAFSSLIAEKEDMQK 180 (533)
Q Consensus 103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~-~~~~~~~a~~~L~~l~~~~~~~~~ 180 (533)
..|.+...+.+.++.||.+|.-++..+++.... . -..+-..+-..|. + ++.-+.+|.-.|... +++.
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~~~~-L-----~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~Er-- 203 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH-L-----IPDAPELIESFLLTEQDPSCKRNAFLMLFTT---DPER-- 203 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhhhhh-h-----cCChHHHHHHHHHhccCchhHHHHHHHHHhc---CHHH--
Confidence 456667788999999999999999998876321 1 1122223334443 3 334445555444432 2221
Q ss_pred HHHHcCcHHHHHHhhhc-CCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 009514 181 LAFEVNGVDKLYNHLQK-GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR 259 (533)
Q Consensus 181 ~~~~~~~l~~L~~~L~~-~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~ 259 (533)
++.-+.....+ ++..+..+...+..+...|..++.- +...+..+..+|++.++.|+..|+..|..++.
T Consensus 204 ------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~-----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~ 272 (948)
T KOG1058|consen 204 ------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAE-----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN 272 (948)
T ss_pred ------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHH-----hhHHHHHHHHHHhcCCchhhhhhcceEEEccC
Confidence 11122221211 1123445666677777766544433 23467889999999999999999999988876
Q ss_pred ccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514 260 SIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA 338 (533)
Q Consensus 260 ~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~a 338 (533)
.....+ .....+++++. .+|-.++.-...-|..+... -+.++ .|.+--+++++.+++-++|..++..
T Consensus 273 ~p~alk-------~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~----~~~il-~~l~mDvLrvLss~dldvr~Ktldi 340 (948)
T KOG1058|consen 273 DPTALK-------AAASTYIDLLVKESDNNVKLIVLDRLSELKAL----HEKIL-QGLIMDVLRVLSSPDLDVRSKTLDI 340 (948)
T ss_pred CHHHHH-------HHHHHHHHHHHhccCcchhhhhHHHHHHHhhh----hHHHH-HHHHHHHHHHcCcccccHHHHHHHH
Confidence 633222 12334555553 34555555555555544421 12333 3666777888999999999999988
Q ss_pred HHHhhccCChHhHHHHHHhhcHHHHHhhh--CCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCc
Q 009514 339 LRNLIFLAEDKCKEEIFMELTASLLASLI--CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK 416 (533)
Q Consensus 339 L~~l~~~~~~~~~~~i~~~~~~~~l~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~ 416 (533)
.-.|..+.+- .+++.....+..-..= .+.+.+.|..-+.++..++..-|+.... +++.+.+.+.+ .+
T Consensus 341 ~ldLvssrNv---ediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aat-------vV~~ll~fisD-~N 409 (948)
T KOG1058|consen 341 ALDLVSSRNV---EDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAAT-------VVSLLLDFISD-SN 409 (948)
T ss_pred HHhhhhhccH---HHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHH-------HHHHHHHHhcc-CC
Confidence 8777664331 1111111111110000 1234566777778888777665543222 56677777766 44
Q ss_pred hhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHhhcC
Q 009514 417 AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 417 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~-~~~~v~~~a~~~L~~l~~ 481 (533)
+..-...+..+.......+..+..+++ .++..+.. ....+...|+|.++..+.
T Consensus 410 ~~aas~vl~FvrE~iek~p~Lr~~ii~------------~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 410 EAAASDVLMFVREAIEKFPNLRASIIE------------KLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHH------------HHHHhhhhhcccccchhHHHHHHHHHh
Confidence 444444444444443334444444443 33333322 345677788888888885
No 127
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.71 E-value=0.039 Score=58.78 Aligned_cols=280 Identities=13% Similarity=0.109 Sum_probs=156.6
Q ss_pred CcHHHHHHhhh------cCCCCchhHHHHHHHHHHhhcc--chhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009514 186 NGVDKLYNHLQ------KGSLHPRRFEGILLALADMCSK--LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV 257 (533)
Q Consensus 186 ~~l~~L~~~L~------~~~~~~~~~~~a~~aL~~l~~~--~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~l 257 (533)
+.++.++++|. .+..++..++.|++++++++.. .+..-+...+.-.++++...++++..-+|..|||.++.+
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 34566677776 3334577889999999999842 111122344556788888888999999999999999999
Q ss_pred hhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHH--hCcHHHHHHhhcCCCHHHHHH
Q 009514 258 SRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIR--LGGVKLLVQLSKSMDSTIRLN 334 (533)
Q Consensus 258 s~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~ 334 (533)
+.- +.... -.-...++.....|. +.+-.|+..|+-||..+..+.....+++.. -+.++.|..+.+.-+.+....
T Consensus 490 ~~~--df~d~-~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 490 SSI--DFKDP-NNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred Hhc--cCCCh-HHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 843 11111 122345556666666 778899999999999998766554443332 244555566665544343333
Q ss_pred HHHHH-HHhhccCChHhHHHHHHhhcHHHHHhhhCC---C---ChhHHHHHHHHHHHhhcC---CcchHHHHHhh-cCch
Q 009514 335 ALRAL-RNLIFLAEDKCKEEIFMELTASLLASLICD---P---EPSVQEQALALVRNLVDG---RINSVEYIFAE-DGII 403 (533)
Q Consensus 335 al~aL-~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~---~---~~~v~~~a~~~L~~l~~~---~~~~~~~i~~~-~~~~ 403 (533)
.+..+ +.....-.| ....+. .......++++.. . +.+=+..|.++|+.+..- -.+. -.++.. .+.+
T Consensus 567 vme~iV~~fseElsP-fA~eL~-q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~-p~vl~~le~~~ 643 (1010)
T KOG1991|consen 567 VMEKIVCKFSEELSP-FAVELC-QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENH-PEVLKQLEPIV 643 (1010)
T ss_pred HHHHHHHHHHHhhch-hHHHHH-HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHH
Confidence 33332 222221111 011111 1223445555542 1 223334555666554321 0111 112221 1224
Q ss_pred HHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 404 LDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 404 ~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
++.+-..|.+ .-.++-+.++.+..+++.-.++ ....+ =++++.+.+.+++...+.-....-+|.|+..
T Consensus 644 l~vi~~iL~~-~i~dfyeE~~ei~~~~t~~~~~-Isp~m--------W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt 711 (1010)
T KOG1991|consen 644 LPVIGFILKN-DITDFYEELLEIVSSLTFLSKE-ISPIM--------WGLLELILEVFQDDGIDYFTDMMPALHNYVT 711 (1010)
T ss_pred HHHHHHHHHH-hhHHHHHHHHHHHhhhhhhhcc-cCHHH--------HHHHHHHHHHHhhhhHHHHHHHHHHHhhhee
Confidence 5555555555 5567777777777776653321 12222 2455667777776666666677777777664
No 128
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.71 E-value=0.0048 Score=55.59 Aligned_cols=197 Identities=17% Similarity=0.156 Sum_probs=117.6
Q ss_pred chHHHHHHhcCCC--CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 009514 230 QVLKLVVDALAHD--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR 307 (533)
Q Consensus 230 ~~l~~l~~~L~~~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 307 (533)
..+|.++..+.+. .+.||..|..+|+++. .....+.+-++.+++..++++.|..|+..+-......
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~~------------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~ 134 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAIG------------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIID 134 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhhc------------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccc
Confidence 3566666666543 4566677777775543 1233445555556666666666666665553211100
Q ss_pred H----HH--------HHHhCcHHHHHHhhcCCC-H-HHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChh
Q 009514 308 R----ST--------FIRLGGVKLLVQLSKSMD-S-TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPS 373 (533)
Q Consensus 308 ~----~~--------~~~~~~i~~L~~ll~~~~-~-~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~ 373 (533)
+ .. -...+-+..+-..+.+.. + .-|..|...|.|+-. + ..+..+.+-+..++.-
T Consensus 135 ~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--E----------eaI~al~~~l~~~Sal 202 (289)
T KOG0567|consen 135 KIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--E----------EAINALIDGLADDSAL 202 (289)
T ss_pred cccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--H----------HHHHHHHHhcccchHH
Confidence 0 00 011123444544443332 2 235667777777632 1 1245566666666777
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccC-CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhh
Q 009514 374 VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENK 452 (533)
Q Consensus 374 v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 452 (533)
.|..+...++.|-... .++.|.+.|... ..+.|+..|+.+|+.++. + .
T Consensus 203 frhEvAfVfGQl~s~~-------------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e----------------~ 251 (289)
T KOG0567|consen 203 FRHEVAFVFGQLQSPA-------------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD--E----------------D 251 (289)
T ss_pred HHHHHHHHHhhccchh-------------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--H----------------H
Confidence 7777777776664321 466666666542 468999999999998873 2 2
Q ss_pred hHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 453 AQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 453 ~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
.++.|.+++.++.+-+++.|..+|..+-+
T Consensus 252 ~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 252 CVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 23577888999999999999999987765
No 129
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.67 E-value=0.0001 Score=50.65 Aligned_cols=55 Identities=24% Similarity=0.167 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009514 287 TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 342 (533)
Q Consensus 287 ~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l 342 (533)
|.+|..|+++|++++...+...+. ....+++.|..+++++++.||.+|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999988766555444 4457899999999999999999999999875
No 130
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.47 E-value=0.0063 Score=64.00 Aligned_cols=167 Identities=13% Similarity=0.166 Sum_probs=120.8
Q ss_pred hcCCCHHHHHHHH-HHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc
Q 009514 324 SKSMDSTIRLNAL-RALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI 402 (533)
Q Consensus 324 l~~~~~~~~~~al-~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~ 402 (533)
+.+.+...|..|+ ..+..+..+.+ + ....+.+++...+.|.+++.-.---|...+..+|+. .++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-------m-ssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL----- 92 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-------M-SSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL----- 92 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-------h-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH-----
Confidence 5555565566555 45566665443 1 112445556666788888888888888888887732 222
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCC
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS 482 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~ 482 (533)
+++.+.+-+++ +++.+|..|++.++.+-. ..++ ..+++.+.+++.++++.||+.|+.|+.++=.-
T Consensus 93 avNti~kDl~d-~N~~iR~~AlR~ls~l~~------~el~--------~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 93 AVNTIQKDLQD-PNEEIRGFALRTLSLLRV------KELL--------GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred HHHHHHhhccC-CCHHHHHHHHHHHHhcCh------HHHH--------HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 56677777777 999999999999987642 2343 35668999999999999999999999988741
Q ss_pred CCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 483 SSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 483 ~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
. ...+.+.|.+..+..++.|++|.|...|..+|..+-.
T Consensus 158 ----d---~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 158 ----D---KDLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred ----C---HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 1 2456678899999999999999999999888887643
No 131
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.46 E-value=0.027 Score=57.22 Aligned_cols=239 Identities=17% Similarity=0.169 Sum_probs=150.1
Q ss_pred CCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCCchhHHHHHHh
Q 009514 240 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT-----STAVQVAALGAISNIVVDFTTRRSTFIRL 314 (533)
Q Consensus 240 ~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-----~~~v~~~a~~aL~nl~~~~~~~~~~~~~~ 314 (533)
...++.+...|.+||+|+-...+..++. +.+.|+.+.++..|+.. +.++.-.....|.-++......+..+++.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~-~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e 120 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQI-FVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEE 120 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHH-HHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence 3567899999999999998887777766 88999999999999754 78899899999888877666666566554
Q ss_pred -CcHHHHHHhhcC-----------------CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHH----HHhhh-----
Q 009514 315 -GGVKLLVQLSKS-----------------MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASL----LASLI----- 367 (533)
Q Consensus 315 -~~i~~L~~ll~~-----------------~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~----l~~lL----- 367 (533)
+++..+...+.. .+......++..+-|++.+.+.... -.....++. +.+++
T Consensus 121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~--~~~~~~~~~l~~il~~~l~~~~~ 198 (446)
T PF10165_consen 121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP--EEFSPSIPHLVSILRRLLPPPPS 198 (446)
T ss_pred hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc--hhhhHHHHHHHHHHHHHhccCCC
Confidence 667766654321 0223455677777888654432111 011122333 33331
Q ss_pred CCCChhHHHHHHHHHHHhhcCCcch-------HHHHHhhcC--chHHHHHHHh----ccCCc---hhHHHHHHHHHHHhc
Q 009514 368 CDPEPSVQEQALALVRNLVDGRINS-------VEYIFAEDG--IILDAVGRQL----RIASK---AEIEIQGMYVLGNVA 431 (533)
Q Consensus 368 ~~~~~~v~~~a~~~L~~l~~~~~~~-------~~~i~~~~~--~~~~~L~~~L----~~~~~---~~v~~~a~~~L~~l~ 431 (533)
..+.......++.+|.|+-..+.+. ...+...+. ..+..|+.+| ..... .+.....+.+|.+++
T Consensus 199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~ 278 (446)
T PF10165_consen 199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA 278 (446)
T ss_pred CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence 1233567778888888874332111 000111111 1334444443 33221 245666788888888
Q ss_pred cCChhhHHHHHHHhhHh---------hhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 432 TGKESHKEAVMDQLLLR---------AENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 432 ~~~~~~~~~~~~~~~~~---------~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
..+...|+.+-..++|- ....+-..|++++.++.+.+|..++..+..++.
T Consensus 279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 87666666655544331 123366789999999999999999999999984
No 132
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.46 E-value=0.0053 Score=51.57 Aligned_cols=132 Identities=13% Similarity=0.205 Sum_probs=103.1
Q ss_pred HhhhhhchHHHHHHhcCCCC------HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC--CHHHHHHHHH
Q 009514 224 SRCLSLQVLKLVVDALAHDS------SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT--STAVQVAALG 295 (533)
Q Consensus 224 ~~~~~~~~l~~l~~~L~~~~------~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~v~~~a~~ 295 (533)
.+++..+|++.|++++.++. .+....+..++..|-.+ +...+. ..+..++..++...... |+.+...|..
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchh-hccHHHHHHHHHHHccccccchHHHHHHH
Confidence 45778899999999998765 35666677777777555 444555 67788899999988743 7899999999
Q ss_pred HHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHh
Q 009514 296 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME 357 (533)
Q Consensus 296 aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~ 357 (533)
.|-+++..++.....+.+.=-++.|+..++.+++.++.+++..+..|....++..|+.+.+.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~ 144 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAET 144 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 99999987766566666666789999999999999999999999999887766555555543
No 133
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.45 E-value=0.16 Score=51.05 Aligned_cols=318 Identities=13% Similarity=0.112 Sum_probs=158.4
Q ss_pred CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhh-----HHHHHHhhhcCCHHHHHHHHHcCcH
Q 009514 114 RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDE-----ASFAFSSLIAEKEDMQKLAFEVNGV 188 (533)
Q Consensus 114 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~-----a~~~L~~l~~~~~~~~~~~~~~~~l 188 (533)
.++..|.+|++.|+.+-+.. .+ +.-.|++.+.++..++.. -..+...+...++..... ..
T Consensus 202 ~~~isqYHalGlLyq~kr~d------km----a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q-----~r 266 (898)
T COG5240 202 GNPISQYHALGLLYQSKRTD------KM----AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQ-----LR 266 (898)
T ss_pred CChHHHHHHHHHHHHHhccc------HH----HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHH-----HH
Confidence 34557999999988765532 22 344555666544333222 223333444444433221 12
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccc--
Q 009514 189 DKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA-- 266 (533)
Q Consensus 189 ~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~-- 266 (533)
|.|-.+|.+.. ..+...+++++.+++..+ ....+. ...+..|-.+|++.....|..|.+.|..++...+..-.
T Consensus 267 pfL~~wls~k~--emV~lE~Ar~v~~~~~~n--v~~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc 341 (898)
T COG5240 267 PFLNSWLSDKF--EMVFLEAARAVCALSEEN--VGSQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC 341 (898)
T ss_pred HHHHHHhcCcc--hhhhHHHHHHHHHHHHhc--cCHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec
Confidence 44445555432 446666777777776432 111121 24567777788899999999999999999865332100
Q ss_pred -hh---hh-h-cCc--HHHHHHhhcCCCH-------------------HHHHHHHHHHHHHhcCCchhHHHHHHhCcHHH
Q 009514 267 -GS---FM-N-ETI--VIPLVRLLDDTST-------------------AVQVAALGAISNIVVDFTTRRSTFIRLGGVKL 319 (533)
Q Consensus 267 -~~---~~-~-~~~--i~~Lv~lL~~~~~-------------------~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~ 319 (533)
.. ++ + ..- .-++..+|+.+.. ..+..+..++..|+..++..+.. .+.-
T Consensus 342 N~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s-----~l~F 416 (898)
T COG5240 342 NKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLS-----YLDF 416 (898)
T ss_pred ChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHH-----HHHH
Confidence 00 00 0 000 1123333333322 22333333333333333222211 1223
Q ss_pred HHHhh-cCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHh
Q 009514 320 LVQLS-KSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFA 398 (533)
Q Consensus 320 L~~ll-~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 398 (533)
|...+ +.+.-+.+..++.++..+.... |+.|+..+ +.|..++.+.+.. +-++++|.-+..--|.. .
T Consensus 417 L~~~L~~eGg~eFK~~~Vdaisd~~~~~-p~skEraL-----e~LC~fIEDcey~--~I~vrIL~iLG~EgP~a-----~ 483 (898)
T COG5240 417 LGSSLLQEGGLEFKKYMVDAISDAMEND-PDSKERAL-----EVLCTFIEDCEYH--QITVRILGILGREGPRA-----K 483 (898)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHhhC-chHHHHHH-----HHHHHHHhhcchh--HHHHHHHHHhcccCCCC-----C
Confidence 33222 2334556666666666665432 34444333 3344455444321 22233333332211110 0
Q ss_pred hcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHh
Q 009514 399 EDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLN 478 (533)
Q Consensus 399 ~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~ 478 (533)
..|..+..+...+-- .+.-|+.+|..+|..++...++. +.. ..+...+.+.+.+.|.++|..|..++.+
T Consensus 484 ~P~~yvrhIyNR~iL-EN~ivRsaAv~aLskf~ln~~d~---~~~-------~sv~~~lkRclnD~DdeVRdrAsf~l~~ 552 (898)
T COG5240 484 TPGKYVRHIYNRLIL-ENNIVRSAAVQALSKFALNISDV---VSP-------QSVENALKRCLNDQDDEVRDRASFLLRN 552 (898)
T ss_pred CcchHHHHHHHHHHH-hhhHHHHHHHHHHHHhccCcccc---ccH-------HHHHHHHHHHhhcccHHHHHHHHHHHHh
Confidence 001133333332222 56789999999998888644321 111 2333577889999999999999999988
Q ss_pred hc
Q 009514 479 LT 480 (533)
Q Consensus 479 l~ 480 (533)
+-
T Consensus 553 ~~ 554 (898)
T COG5240 553 MR 554 (898)
T ss_pred hh
Confidence 76
No 134
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.40 E-value=0.0011 Score=51.30 Aligned_cols=93 Identities=19% Similarity=0.204 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCc
Q 009514 420 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI 499 (533)
Q Consensus 420 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~ 499 (533)
+..++..|..++.+-.......+ ..++|.+...+.++|+.||..|+.+|.+++... ..+.... =..+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l--------~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~---~~~~l~~--f~~I 69 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYL--------DEILPPVLKCFDDQDSRVRYYACEALYNISKVA---RGEILPY--FNEI 69 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHH--------HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH---HHHHHHH--HHHH
Confidence 56778888887776655555555 467899999999999999999999999999521 1111111 2346
Q ss_pred HHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514 500 VSHVKNMVNDPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 500 ~~~L~~ll~~~~~~v~~~a~~aL~~~~ 526 (533)
++.|.++..|+++.||..| +.|-++.
T Consensus 70 F~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 70 FDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 7899999999999999664 6666654
No 135
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.37 E-value=0.068 Score=54.32 Aligned_cols=267 Identities=16% Similarity=0.128 Sum_probs=158.2
Q ss_pred HHHHHHHhhccccccchhhhhcCcHHHHHHhh----------cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHH
Q 009514 251 CMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL----------DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLL 320 (533)
Q Consensus 251 ~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL----------~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L 320 (533)
+.+|+.++|.... ... +....++..|.++- ..+++++..+|..+|+|+....+..++.+.+.|..+.+
T Consensus 2 L~~LRiLsRd~~~-~~~-l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l 79 (446)
T PF10165_consen 2 LETLRILSRDPTG-LDP-LFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL 79 (446)
T ss_pred HHHHHHHccCccc-chh-hccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence 4567777777333 223 56666777777765 24688999999999999999998999999999999999
Q ss_pred HHhhcCC-----CHHHHHHHHHHHHHhhccCChHhHHHHHHh-hcHHHHHhhhC----C-------------CChhHHHH
Q 009514 321 VQLSKSM-----DSTIRLNALRALRNLIFLAEDKCKEEIFME-LTASLLASLIC----D-------------PEPSVQEQ 377 (533)
Q Consensus 321 ~~ll~~~-----~~~~~~~al~aL~~l~~~~~~~~~~~i~~~-~~~~~l~~lL~----~-------------~~~~v~~~ 377 (533)
+..++.. +.++.-...+.|-=++. ..++.+..+.+. ++++.+...|. . .+......
T Consensus 80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa-~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 80 CERLKNYSDSSQPSDVEFLDSRLLFLLTA-LRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHHHcccccCCChhHHHHHHHHHHHHhc-CChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 9998875 56667667777765554 344566666554 55555555441 1 13455667
Q ss_pred HHHHHHHhhcCCcchHHHHHhhc-CchHHHHHHHh---c-cCCchhHHHHHHHHHHHhccCChhhHHHHHHHh-------
Q 009514 378 ALALVRNLVDGRINSVEYIFAED-GIILDAVGRQL---R-IASKAEIEIQGMYVLGNVATGKESHKEAVMDQL------- 445 (533)
Q Consensus 378 a~~~L~~l~~~~~~~~~~i~~~~-~~~~~~L~~~L---~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~------- 445 (533)
++.++-|+....+.......... ..++..+..++ . ..+......++..+|.|+--.+... ++...
T Consensus 159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~---l~~~~~~~~~~~ 235 (446)
T PF10165_consen 159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDS---LLSPKFQQSSLF 235 (446)
T ss_pred HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhh---hhcccCCccccc
Confidence 88888888866554332111110 01334444331 1 1133467788888888885322111 00000
Q ss_pred hHhhhhhhHHHHHHhhcc-----CC---hhHHHHHHHHHHhhcCCCCCCcHHHHHHHH----------------HCCcHH
Q 009514 446 LLRAENKAQSCIIKFLQS-----ND---SRLRTAAVWAVLNLTCSSSPGSSGRLVKLH----------------DAGIVS 501 (533)
Q Consensus 446 ~~~~~~~~~~~lv~~L~~-----~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~----------------~~g~~~ 501 (533)
....+...+..++++|.. .+ .+.-.....+|.+++..+ ....+++. ......
T Consensus 236 ~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~----~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~ 311 (446)
T PF10165_consen 236 PEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA----REVRKYLRARLLPPDKDRKKPPEKGDTLRS 311 (446)
T ss_pred CCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc----HHHHHHHHHHhCCChhhcccCCCCCcchHH
Confidence 000012234455555432 11 134445555666666421 11122222 234557
Q ss_pred HHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 502 HVKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 502 ~L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
.|+++++++.+.++..+..-|..+.+
T Consensus 312 rLlrLmt~~~~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 312 RLLRLMTSPDPQLKDAVAELLFVLCK 337 (446)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 89999998889999999988887754
No 136
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.34 E-value=0.0014 Score=50.62 Aligned_cols=92 Identities=23% Similarity=0.222 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC
Q 009514 205 FEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD 284 (533)
Q Consensus 205 ~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~ 284 (533)
|..++.+|++.+..-+.. -.-.-..++|+++..+.+++++||..||.+|.+++......-- ..-..+.+.|.+++.+
T Consensus 3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l--~~f~~IF~~L~kl~~D 79 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL--PYFNEIFDALCKLSAD 79 (97)
T ss_pred hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcC
Confidence 456677777665432221 1111235899999999999999999999999999876322110 0124567778888899
Q ss_pred CCHHHHHHHHHHHHHH
Q 009514 285 TSTAVQVAALGAISNI 300 (533)
Q Consensus 285 ~~~~v~~~a~~aL~nl 300 (533)
+++.|+..| ..|-++
T Consensus 80 ~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 80 PDENVRSAA-ELLDRL 94 (97)
T ss_pred CchhHHHHH-HHHHHH
Confidence 999998777 444443
No 137
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.34 E-value=0.021 Score=50.22 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=73.9
Q ss_pred CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHh
Q 009514 286 STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS 365 (533)
Q Consensus 286 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ 365 (533)
++.+|..++-+++-++..++... ...++.+...++++++.+|.+|+.+|.+|....--..+ ...+..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k-----~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK-----GQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh-----hhhhHHHHH
Confidence 57899999999999997765433 35688999999999999999999999999764321111 122367778
Q ss_pred hhCCCChhHHHHHHHHHHHhhcC
Q 009514 366 LICDPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 366 lL~~~~~~v~~~a~~~L~~l~~~ 388 (533)
++.|++++|+..|...+..+...
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999866
No 138
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.27 E-value=0.27 Score=49.76 Aligned_cols=345 Identities=16% Similarity=0.147 Sum_probs=181.1
Q ss_pred HHHHHHhcCCCC----chhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhh
Q 009514 147 INNLLELLDDPG----RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222 (533)
Q Consensus 147 i~~L~~ll~~~~----~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~ 222 (533)
+|.++..|.++. .-......+|+.++...+-...... ..+.++.....+. .+......++.++..+.......
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~i~~~~~~--~ll~kl~~~~~~~-~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQILETLSI--RLLNKLSIVCQSE-SSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChhHHHHHHH--HHHHHHHHHhcCC-CChHHHHHHHHHHHHHHHhcccc
Confidence 366777776432 3346677888888765544322221 2233333333322 23455566677777665433222
Q ss_pred h-----HhhhhhchHHHHHHhcCC-----C--CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-------
Q 009514 223 R-----SRCLSLQVLKLVVDALAH-----D--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD------- 283 (533)
Q Consensus 223 ~-----~~~~~~~~l~~l~~~L~~-----~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~------- 283 (533)
. ....+..++|.+.+.... . ++.+...+...+..+.+..+.... ...+..++.+..
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q-----~~~~~~~~~lf~~~~~~~~ 152 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQ-----QEILDELYSLFLSPKSFSP 152 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHHccccccCC
Confidence 2 111222367777776531 1 255666666666666555333222 233445555432
Q ss_pred ---C------CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCCh-HhHH
Q 009514 284 ---D------TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAED-KCKE 352 (533)
Q Consensus 284 ---~------~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~~~-~~~~ 352 (533)
+ .......-...+++.+-.+..- . -....+..++.+..+ .++..|..++..++.++.--.. +.-+
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~--~--~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~ 228 (415)
T PF12460_consen 153 FQPSSSTISEQQSRLVILFSAILCSLRKDVSL--P--DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD 228 (415)
T ss_pred CCccccccccccccHHHHHHHHHHcCCcccCc--c--CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH
Confidence 1 1112223333444443322110 0 111356677766544 4577888888888887643211 1111
Q ss_pred HHHHhhcHHHHHhhh-CCCChhHHHH----HHHHHHHhh-cCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHH
Q 009514 353 EIFMELTASLLASLI-CDPEPSVQEQ----ALALVRNLV-DGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYV 426 (533)
Q Consensus 353 ~i~~~~~~~~l~~lL-~~~~~~v~~~----a~~~L~~l~-~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~ 426 (533)
.+ ++.+..-+ ...+...+.. ..|....+. .+++... .+++.|..+|.+ +++...++..
T Consensus 229 ~~-----l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~--------~~~~~L~~lL~~---~~~g~~aA~~ 292 (415)
T PF12460_consen 229 EF-----LDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT--------ELLDKLLELLSS---PELGQQAAKA 292 (415)
T ss_pred HH-----HHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH--------HHHHHHHHHhCC---hhhHHHHHHH
Confidence 11 22222222 2233333333 334444443 3332211 145556566654 6666777777
Q ss_pred HHHhccCChh-------------hHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHH
Q 009514 427 LGNVATGKES-------------HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK 493 (533)
Q Consensus 427 L~~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 493 (533)
++-+....++ .++.++ ..++|.+++..+..+...|.....+|+.+.. ..+..+-.
T Consensus 293 f~il~~d~~~~l~~~~~a~vklLykQR~F--------~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~----~vP~~vl~ 360 (415)
T PF12460_consen 293 FGILLSDSDDVLNKENHANVKLLYKQRFF--------TQVLPKLLEGFKEADDEIKSNYLTALSHLLK----NVPKSVLL 360 (415)
T ss_pred HhhHhcCcHHhcCccccchhhhHHhHHHH--------HHHHHHHHHHHhhcChhhHHHHHHHHHHHHh----hCCHHHHH
Confidence 7666654221 234444 3577899999888887789999999999985 22222111
Q ss_pred HHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhccc
Q 009514 494 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS 531 (533)
Q Consensus 494 l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~~ 531 (533)
-.-..++|.|.+-|+-++.+++..+...|..+.+..+.
T Consensus 361 ~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~ 398 (415)
T PF12460_consen 361 PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE 398 (415)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence 11123678888888888888999898988888766543
No 139
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.22 E-value=0.044 Score=48.17 Aligned_cols=92 Identities=17% Similarity=0.270 Sum_probs=72.4
Q ss_pred chhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHh
Q 009514 202 PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL 281 (533)
Q Consensus 202 ~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l 281 (533)
+.+|-+++.+++.++..-+..- ...+|.+...|.++++.||..|..+|..|... +..+ ....++..++.+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik----~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIK----VKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-Ccee----ehhhhhHHHHHH
Confidence 6688999999999986544322 24688999999999999999999999999765 2222 122334778888
Q ss_pred hcCCCHHHHHHHHHHHHHHhcC
Q 009514 282 LDDTSTAVQVAALGAISNIVVD 303 (533)
Q Consensus 282 L~~~~~~v~~~a~~aL~nl~~~ 303 (533)
+.+++++++..|...+..+...
T Consensus 72 l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999998864
No 140
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.22 E-value=0.00098 Score=42.40 Aligned_cols=38 Identities=34% Similarity=0.446 Sum_probs=34.6
Q ss_pred hhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514 306 TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 343 (533)
Q Consensus 306 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~ 343 (533)
+.+..+.+.|+++.|+++++++++.++..++|+|.|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 35678889999999999999999999999999999986
No 141
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.22 E-value=0.0076 Score=50.64 Aligned_cols=121 Identities=17% Similarity=0.192 Sum_probs=97.4
Q ss_pred hhhcCcHHHHHHhhcCCC------HHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC--CHHHHHHHHHHHH
Q 009514 269 FMNETIVIPLVRLLDDTS------TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRALR 340 (533)
Q Consensus 269 ~~~~~~i~~Lv~lL~~~~------~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~al~aL~ 340 (533)
|+..+|+..|+++++++. .+....++.++..|... +.......+..-|..++.+.... +..+.+.|+..|-
T Consensus 7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 778899999999998654 47788899999999864 33344566666778888877653 5788999999999
Q ss_pred HhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc
Q 009514 341 NLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 391 (533)
Q Consensus 341 ~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 391 (533)
+++.+ ++.....+.++-.++.|+.+|..+++++|.+++..+..+....++
T Consensus 86 s~Vl~-S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 86 SIVLN-SPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHhC-CHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 99874 466677888888899999999999999999999888888765443
No 142
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.39 Score=50.26 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=44.9
Q ss_pred CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514 415 SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 415 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~ 480 (533)
.+..++.+|..+|.++..+++..+..+. ..+.+++.+.|.++|..|..++.++.
T Consensus 478 En~ivRaaAv~alaKfg~~~~~l~~sI~------------vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 478 ENAIVRAAAVSALAKFGAQDVVLLPSIL------------VLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhHHHHHHHHHHHhcCCCCccccHH------------HHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 5678999999999999977765554443 57888999999999999999999887
No 143
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.16 E-value=0.00092 Score=42.55 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=35.1
Q ss_pred hhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 009514 221 CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR 259 (533)
Q Consensus 221 ~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~ 259 (533)
+.+..+.+.|+++.|++++++++++++..++++|+|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 366778899999999999999999999999999999863
No 144
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.034 Score=57.25 Aligned_cols=155 Identities=15% Similarity=0.171 Sum_probs=97.7
Q ss_pred HhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhh-hCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc
Q 009514 322 QLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGRINSVEYIFAED 400 (533)
Q Consensus 322 ~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~ 400 (533)
+++.+.++-+|.....++.---.+.++ .+.+..|+.. .+|.+.+|+..|..+|+-+++.+|+.
T Consensus 526 el~~dkdpilR~~Gm~t~alAy~GTgn--------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-------- 589 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAYVGTGN--------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-------- 589 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHHhccCc--------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh--------
Confidence 555666677777666555422111211 1345666665 67899999999999999999988762
Q ss_pred CchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514 401 GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 401 ~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~ 480 (533)
.+-.+++|..+-++.|+..++.+|+=.+.|.-. ... + ..|-.+..++..-||..|+-++..+.
T Consensus 590 ---~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eA-i------------~lLepl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 590 ---LPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEA-I------------NLLEPLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred ---chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHH-H------------HHHhhhhcChHHHHHHHHHHHHHHHH
Confidence 334446666668899999999999977776531 221 1 23334455677779999998888777
Q ss_pred CCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcH
Q 009514 481 CSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDV 514 (533)
Q Consensus 481 ~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v 514 (533)
.-..+..-.+. .|+.+.+.+...+..++.
T Consensus 653 ~Q~t~~~~pkv-----~~frk~l~kvI~dKhEd~ 681 (929)
T KOG2062|consen 653 IQQTEQLCPKV-----NGFRKQLEKVINDKHEDG 681 (929)
T ss_pred HhcccccCchH-----HHHHHHHHHHhhhhhhHH
Confidence 42221111111 234466666666555553
No 145
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.64 Score=51.07 Aligned_cols=224 Identities=16% Similarity=0.182 Sum_probs=130.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHH--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHH
Q 009514 284 DTSTAVQVAALGAISNIVVDFTTRRSTFIR--LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTAS 361 (533)
Q Consensus 284 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~ 361 (533)
+.+..+|..+...|..++.. +.......+ ..+.+.+..-+++.....+...+.+|..+....+.+. ...+.....+
T Consensus 665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~-~~~i~k~I~E 742 (1176)
T KOG1248|consen 665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEH-CDLIPKLIPE 742 (1176)
T ss_pred cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHH
Confidence 55899999999999999875 222212111 1334455555666677788888888888876554322 3334444455
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHhhc--CCc----chHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCCh
Q 009514 362 LLASLICDPEPSVQEQALALVRNLVD--GRI----NSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 435 (533)
Q Consensus 362 ~l~~lL~~~~~~v~~~a~~~L~~l~~--~~~----~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~ 435 (533)
.++.+ ++.+..-+..+..+|..++. ... +.....+++ ++..+..-+.. ..+.+....+.++..+.....
T Consensus 743 vIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lne---fl~~Isagl~g-d~~~~~as~Ivai~~il~e~~ 817 (1176)
T KOG1248|consen 743 VILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNE---FLSIISAGLVG-DSTRVVASDIVAITHILQEFK 817 (1176)
T ss_pred HHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHH---HHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHHh
Confidence 66655 88899999999999988872 110 001122221 23333322222 222233332444444443221
Q ss_pred hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHH
Q 009514 436 SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVK 515 (533)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~ 515 (533)
...+.-.- .+++..+..+|.++.++++..|+.++..++. ..++-...-....+++.+..++++....++
T Consensus 818 ~~ld~~~l-------~~li~~V~~~L~s~sreI~kaAI~fikvlv~----~~pe~~l~~~~~~LL~sll~ls~d~k~~~r 886 (1176)
T KOG1248|consen 818 NILDDETL-------EKLISMVCLYLASNSREIAKAAIGFIKVLVY----KFPEECLSPHLEELLPSLLALSHDHKIKVR 886 (1176)
T ss_pred ccccHHHH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----cCCHHHHhhhHHHHHHHHHHHHHhhhHHHH
Confidence 11111110 3455666677889999999999999999995 222222222233367788888876666777
Q ss_pred HHHHHHHHHH
Q 009514 516 LRVKTALEQF 525 (533)
Q Consensus 516 ~~a~~aL~~~ 525 (533)
.++..-|..+
T Consensus 887 ~Kvr~LlekL 896 (1176)
T KOG1248|consen 887 KKVRLLLEKL 896 (1176)
T ss_pred HHHHHHHHHH
Confidence 7776666665
No 146
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.08 E-value=0.56 Score=49.91 Aligned_cols=164 Identities=17% Similarity=0.177 Sum_probs=101.7
Q ss_pred hcCCCcchhHHHHH-HHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccccCccc
Q 009514 26 LNNESENVSGLGAS-IISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRT 103 (533)
Q Consensus 26 L~~~~~~v~~~a~~-~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~ 103 (533)
+.+.++..+..|.+ +|+.+....+-.. ..+.+++.... +..++.-.-.=|-..++.+|+.. + -.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dmss------Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~--l------La 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMSS------LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELA--L------LA 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHH--H------HH
Confidence 45555555555544 6666654433111 22233333332 33444444333444455555432 1 24
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHH
Q 009514 104 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLA 182 (533)
Q Consensus 104 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~ 182 (533)
+..+.+-++++++.+|..|.+.+..+-. .-+...+++++.+++.+ .+.+|..|+.++.++-.-+... .
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~~--------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l---~ 162 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLRV--------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL---Y 162 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcCh--------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh---h
Confidence 5667778889999999999998876433 23445689999999986 4789999999999997665443 3
Q ss_pred HHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhh
Q 009514 183 FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMC 216 (533)
Q Consensus 183 ~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~ 216 (533)
.+.|.+..+..++.+. +|.+..+|+.++..+.
T Consensus 163 ~~~g~~~~l~~l~~D~--dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 163 HELGLIDILKELVADS--DPIVIANALASLAEID 194 (757)
T ss_pred hcccHHHHHHHHhhCC--CchHHHHHHHHHHHhc
Confidence 3455566666655554 4888888888888764
No 147
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.08 E-value=0.003 Score=48.87 Aligned_cols=68 Identities=13% Similarity=0.163 Sum_probs=58.0
Q ss_pred hhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh
Q 009514 161 GDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS 228 (533)
Q Consensus 161 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~ 228 (533)
+.....++++++..++..+..+.+.||+|.+++...-...+|-++|.|++++.+|+.++++++..+.+
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45677899999999999999999999999999876555567899999999999999998888765543
No 148
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.04 E-value=0.13 Score=52.72 Aligned_cols=301 Identities=14% Similarity=0.106 Sum_probs=145.4
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhh
Q 009514 62 RLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVG 141 (533)
Q Consensus 62 ~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 141 (533)
.++...+++...+.-|..-+.....+-|+.. ...+..++.++.+++..||..|.+-|..+++.++.+.
T Consensus 27 ~il~~~kg~~k~K~Laaq~I~kffk~FP~l~--------~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v---- 94 (556)
T PF05918_consen 27 EILDGVKGSPKEKRLAAQFIPKFFKHFPDLQ--------EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV---- 94 (556)
T ss_dssp HHHHGGGS-HHHHHHHHHHHHHHHCC-GGGH--------HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H----
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHhhChhhH--------HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH----
Confidence 3455556778888889889998888888775 3578899999999999999999999999999765432
Q ss_pred hHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhc-CCCCchhHHHHHHHHHHhhcc-
Q 009514 142 IKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQK-GSLHPRRFEGILLALADMCSK- 218 (533)
Q Consensus 142 ~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~-~~~~~~~~~~a~~aL~~l~~~- 218 (533)
..+...|+++|..+ +.-...+-.+|..+...++. +.+..+...+.. .+.+..+|+.++..|..-...
T Consensus 95 --~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l 164 (556)
T PF05918_consen 95 --SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREKLKPL 164 (556)
T ss_dssp --HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS
T ss_pred --hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhC
Confidence 36788999999843 33334455666666554443 224444444431 112456888888777532221
Q ss_pred chhhhH--hhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhh------cCCCHHHH
Q 009514 219 LECCRS--RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL------DDTSTAVQ 290 (533)
Q Consensus 219 ~~~~~~--~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL------~~~~~~v~ 290 (533)
..+.-. .-.+.-++..+-+.|++-...=-.....+|..+..- ...... -.....++.+.+.. ...|++..
T Consensus 165 ~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~-~~~~t~-~g~qeLv~ii~eQa~Ld~~f~~sD~e~I 242 (556)
T PF05918_consen 165 KPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIY-GGKQTI-EGRQELVDIIEEQADLDQPFDPSDPESI 242 (556)
T ss_dssp -TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG----GSSH-HHHHHHHHHHHHHHTTTS---SSSHHHH
T ss_pred cHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccc-cccCCh-HHHHHHHHHHHHHhccCCCCCCcCHHHH
Confidence 111111 112233555666677653322122223444443220 000000 00111222233222 12355555
Q ss_pred HHHHHHHHHHhcCCc------hhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHH
Q 009514 291 VAALGAISNIVVDFT------TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLA 364 (533)
Q Consensus 291 ~~a~~aL~nl~~~~~------~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~ 364 (533)
..-..++..-.-.+. .....+. ..++|.+-.+ .+..+..-+.++..++...........+. ..++.|.
T Consensus 243 drli~C~~~Alp~fs~~v~Sskfv~y~~-~kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~~L~ 316 (556)
T PF05918_consen 243 DRLISCLRQALPFFSRGVSSSKFVNYMC-EKVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQLLK 316 (556)
T ss_dssp HHHHHHHHHHGGG-BTTB--HHHHHHHH-HHTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHHHHH
T ss_pred HHHHHHHHHhhHHhcCCCChHHHHHHHH-HHhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHHHHH
Confidence 555554433211111 1111222 2344433333 44667778888888876554322333331 2234444
Q ss_pred hhhCC--C----ChhHHHHHHHHHHHhhcCCcch
Q 009514 365 SLICD--P----EPSVQEQALALVRNLVDGRINS 392 (533)
Q Consensus 365 ~lL~~--~----~~~v~~~a~~~L~~l~~~~~~~ 392 (533)
..+-. . +....+..+.++.+|+...|+.
T Consensus 317 ~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~~ 350 (556)
T PF05918_consen 317 KYMPSKKTEPKLQFSYVECLLYAFHQLARKSPNS 350 (556)
T ss_dssp TTS----------HHHHHHHHHHHHHHHTT-THH
T ss_pred HhCCCCCCCCcccchHhhHHHHHHHHHhhhCcch
Confidence 43321 1 2345667777778888776653
No 149
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.03 E-value=0.045 Score=50.82 Aligned_cols=234 Identities=9% Similarity=0.057 Sum_probs=136.7
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCchhHHHHHH-
Q 009514 237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAALGAISNIVVDFTTRRSTFIR- 313 (533)
Q Consensus 237 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~~~- 313 (533)
++++.-++..|.-|..|+.++.... ..|.....+..+-..++.+++. .+..+|+..+-++..++.. +.+.+.+-+
T Consensus 156 kl~Q~i~~lTrlfav~cl~~l~~~~-e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~ 233 (432)
T COG5231 156 KLSQLIDFLTRLFAVSCLSNLEFDV-EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKM 233 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHH
Confidence 3444455667888899999987663 3333312445566678888874 4689999999999988853 333322221
Q ss_pred hCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC---CChhHHHHHHH---------
Q 009514 314 LGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD---PEPSVQEQALA--------- 380 (533)
Q Consensus 314 ~~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~---~~~~v~~~a~~--------- 380 (533)
...+.-++++.+.. ...+-+-++..+.|++...+...-...+-.+.+..-++.|.. +|.+++...-.
T Consensus 234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 24566666766643 345666677777787763321121222222323333333321 23322221111
Q ss_pred --------HHHHh----hcCCcc---------hHHHHHhhcCchHHHHHHHhccCCchh-HHHHHHHHHHHhccCChhhH
Q 009514 381 --------LVRNL----VDGRIN---------SVEYIFAEDGIILDAVGRQLRIASKAE-IEIQGMYVLGNVATGKESHK 438 (533)
Q Consensus 381 --------~L~~l----~~~~~~---------~~~~i~~~~~~~~~~L~~~L~~~~~~~-v~~~a~~~L~~l~~~~~~~~ 438 (533)
-+..+ .+.+|. .+..+.+..-.++..|.++++. ..+. +-.-||.-|..+....|+.+
T Consensus 314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~-n~~nt~i~vAc~Di~~~Vr~~PE~~ 392 (432)
T COG5231 314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQS-NNPNTWICVACSDIFQLVRASPEIN 392 (432)
T ss_pred hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhc-CCCCceEeeeHhhHHHHHHhCchHH
Confidence 11111 111211 1112222111266777788887 4443 55667888888888777766
Q ss_pred HHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514 439 EAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~ 480 (533)
..+.. .|+-..++++++++|++|+.+|..++..+.
T Consensus 393 ~vl~K-------yg~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 393 AVLSK-------YGVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred HHHHH-------hhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 65554 788899999999999999999999987765
No 150
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.94 E-value=0.2 Score=48.26 Aligned_cols=188 Identities=21% Similarity=0.216 Sum_probs=109.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHH---hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCC-hHhHHH
Q 009514 278 LVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR---LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAE-DKCKEE 353 (533)
Q Consensus 278 Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~---~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~-~~~~~~ 353 (533)
.+..+.+.....|+.++..+.++...... ..++. .-.+..+.+.++.+..+-+.-|+.++.-++...+ ......
T Consensus 48 ~Id~l~eK~~~~Re~aL~~l~~~l~~~~~--~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 48 AIDLLTEKSSSTREAALEALIRALSSRYL--PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 34444566788999999999887753321 12222 2356667777777665556667676666654322 123445
Q ss_pred HHHhhcHHHHHhhhCCCC--hhHHHHHHHHHHHh---hcCCcchHHHHHhhcCchHHHHH--HHhccCC---------ch
Q 009514 354 IFMELTASLLASLICDPE--PSVQEQALALVRNL---VDGRINSVEYIFAEDGIILDAVG--RQLRIAS---------KA 417 (533)
Q Consensus 354 i~~~~~~~~l~~lL~~~~--~~v~~~a~~~L~~l---~~~~~~~~~~i~~~~~~~~~~L~--~~L~~~~---------~~ 417 (533)
+++. ..+.|.+.+.++. .+++..++.+|+-+ +..+++.+...++ .++.+. ....+++ ++
T Consensus 126 i~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~----~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 126 IFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME----SLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred HHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH----HHHHHHHHHhcCcCCCcccccCCCcc
Confidence 5554 4678888887654 45666666566544 3444444443333 333221 1222211 24
Q ss_pred hHHHHHHHHHHHhccCChh-hHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514 418 EIEIQGMYVLGNVATGKES-HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 418 ~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~ 480 (533)
.+...|+.+-+-+.+.-+. ...... ...+|.|..+|.+++.+||.+|..+|.-+-
T Consensus 201 ~l~~aAL~aW~lLlt~~~~~~~~~~~--------~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 201 ALVAAALSAWALLLTTLPDSKLEDLL--------EEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 5666666555545543332 233333 356799999999999999999998887554
No 151
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=96.91 E-value=0.15 Score=47.42 Aligned_cols=233 Identities=18% Similarity=0.217 Sum_probs=134.6
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhccCChHhHHHHHHh-hc
Q 009514 283 DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCKEEIFME-LT 359 (533)
Q Consensus 283 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~-~~ 359 (533)
+.-++-.+..|..++.++........-...+...-..++++++. .+..++.+++..+.-++. ++.+.+.+-.- ..
T Consensus 159 Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf--~~~~aqdi~K~~dl 236 (432)
T COG5231 159 QLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF--SKECAQDIDKMDDL 236 (432)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc--CHHHHHHHHHHHHH
Confidence 33345578899999999987554433333444444566776664 345678888888877765 34455333221 12
Q ss_pred HHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcch-HHHHHhhcCchHHHHHHHhcc-CCchhH---------------HH
Q 009514 360 ASLLASLIC-DPEPSVQEQALALVRNLVDGRINS-VEYIFAEDGIILDAVGRQLRI-ASKAEI---------------EI 421 (533)
Q Consensus 360 ~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~~~~~~L~~~L~~-~~~~~v---------------~~ 421 (533)
+.-++.+.+ ....+|..-+++++.|+++..|.. +....-.+. +.+....++.. ..+.++ ++
T Consensus 237 i~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~-~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~ 315 (432)
T COG5231 237 INDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLND-ISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKK 315 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcc-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhh
Confidence 344455554 345678888999999999854432 222222221 11111111110 011111 11
Q ss_pred HHHH--HHHHhccC----Ch---------hhHHHHHHHhhHhhhhhhHHHHHHhhccCChh-HHHHHHHHHHhhcCCCCC
Q 009514 422 QGMY--VLGNVATG----KE---------SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR-LRTAAVWAVLNLTCSSSP 485 (533)
Q Consensus 422 ~a~~--~L~~l~~~----~~---------~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~-v~~~a~~~L~~l~~~~~~ 485 (533)
-+.+ -+..+-+| +| ...+.+.+. +..++..|..++++.+++ ...-||.=|..+..
T Consensus 316 l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kd-----ny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr---- 386 (432)
T COG5231 316 LCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKD-----NYEIVKVLKKYLQSNNPNTWICVACSDIFQLVR---- 386 (432)
T ss_pred hhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhh-----hHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHH----
Confidence 1111 01111111 11 123333332 356788999999987765 23345555555553
Q ss_pred CcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 486 GSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 486 ~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
..++....+.+-|+-+.+.+|++.++++|+..|..|++.+..
T Consensus 387 ~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 387 ASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred hCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 456777889999999999999999999999999999988753
No 152
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.90 E-value=0.0052 Score=47.56 Aligned_cols=65 Identities=23% Similarity=0.345 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhh--CCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 009514 331 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI--CDPEPSVQEQALALVRNLVDGRINSVEYI 396 (533)
Q Consensus 331 ~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 396 (533)
+|...++.++|+++. .+..++.+.+.++++.++... ++.+|-++++|+++++|++.++++..+.+
T Consensus 2 ~K~~lvrlianl~~~-~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 2 FKRDLVRLIANLCYK-NKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred cHHHHHHHHHHHHhC-CHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 366778899999974 577899999999999999875 46789999999999999999987654433
No 153
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=96.90 E-value=0.48 Score=50.40 Aligned_cols=245 Identities=13% Similarity=0.088 Sum_probs=142.7
Q ss_pred CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHH
Q 009514 158 GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD 237 (533)
Q Consensus 158 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~ 237 (533)
+.+-..+.+.+...+........ +.. -.+...+..+.-. .++-++..|++++...++.. . -.-...+++..+.+
T Consensus 464 P~Ll~Ra~~~i~~fs~~~~~~~~-~~~-~fl~~~v~~l~~~-~~~~~ki~a~~~~~~~~~~~--v-l~~~~p~ild~L~q 537 (1005)
T KOG2274|consen 464 PFLLLRAFLTISKFSSSTVINPQ-LLQ-HFLNATVNALTMD-VPPPVKISAVRAFCGYCKVK--V-LLSLQPMILDGLLQ 537 (1005)
T ss_pred HHHHHHHHHHHHHHHhhhccchh-HHH-HHHHHHHHhhccC-CCCchhHHHHHHHHhccCce--e-ccccchHHHHHHHH
Confidence 33334666666665543222111 000 1123334434333 34557788888887776321 1 01113357777888
Q ss_pred hcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhh--cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhC
Q 009514 238 ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL--DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG 315 (533)
Q Consensus 238 ~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL--~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~ 315 (533)
+....+.++--.-..+|+..+.-.+.... ..++.+.|-.+.+. .++||-+...+-.++-.++.. ..+. .-...-
T Consensus 538 las~~s~evl~llmE~Ls~vv~~dpef~a--s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~-g~m~e~ 613 (1005)
T KOG2274|consen 538 LASKSSDEVLVLLMEALSSVVKLDPEFAA--SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQI-AANY-GPMQER 613 (1005)
T ss_pred HcccccHHHHHHHHHHHHHHhccChhhhh--hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhh-cchHHH
Confidence 87777888888888888888665343322 24566666666554 366777766666666555531 1111 122245
Q ss_pred cHHHHHHhhcCCC----HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhh-hCCCChhHHHHHHHHHHHhhcCCc
Q 009514 316 GVKLLVQLSKSMD----STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGRI 390 (533)
Q Consensus 316 ~i~~L~~ll~~~~----~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-L~~~~~~v~~~a~~~L~~l~~~~~ 390 (533)
.||.+++.+..++ .....-++..|..+.++.++...+.+... ..+.+.+. +.++|......+-.+|+.+....+
T Consensus 614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 7899999998765 55667788888888877766555555443 35555554 466778888899999999887755
Q ss_pred chHHHHHhhcCc----hHHHHHHHhcc
Q 009514 391 NSVEYIFAEDGI----ILDAVGRQLRI 413 (533)
Q Consensus 391 ~~~~~i~~~~~~----~~~~L~~~L~~ 413 (533)
+.+..--.++|. +|+.+.++|..
T Consensus 693 eq~~t~~~e~g~~~~yImqV~sqLLdp 719 (1005)
T KOG2274|consen 693 EQLLTWHDEPGHNLWYIMQVLSQLLDP 719 (1005)
T ss_pred HHHHhhccCCCccHHHHHHHHHHHcCC
Confidence 433332223332 55666665553
No 154
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.84 E-value=0.088 Score=55.04 Aligned_cols=242 Identities=17% Similarity=0.195 Sum_probs=156.6
Q ss_pred hhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHH-HHHHHHHHHHHhhccCC
Q 009514 269 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST-IRLNALRALRNLIFLAE 347 (533)
Q Consensus 269 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~-~~~~al~aL~~l~~~~~ 347 (533)
.+..|+...|+.+.....++.+.....+|..-. +++..+ ....++.+...++..... -...++.++.||+..+
T Consensus 500 ~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i-~f~~~~----~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s- 573 (748)
T KOG4151|consen 500 KIKPGGYEALLRLGQQQFEEAKLKWYHALAGKI-DFPGER----SYEVVKPLDSALHNDEKGLENFEALEALTNLASIS- 573 (748)
T ss_pred cccccHHHHHHHHHHHhchHHHHHHHHHHhhhc-CCCCCc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcc-
Confidence 578899999999998777888888888887211 122111 124566666666544322 2446889999987644
Q ss_pred hHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHH
Q 009514 348 DKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVL 427 (533)
Q Consensus 348 ~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L 427 (533)
...|+++..+.+.+-+-.++.+.++..|..++..+.||..+.. .++..+-++..-++.....+.. .......+++.++
T Consensus 574 ~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~-~~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a~ 651 (748)
T KOG4151|consen 574 ESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPL-LYERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGAL 651 (748)
T ss_pred hhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHH-HHHHHhhccccCchHHHHHHHh-hhhHHhhhccccc
Confidence 4567778888888888888889999999999999999987632 2333222221112222222333 4455666677776
Q ss_pred HHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhh
Q 009514 428 GNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV 507 (533)
Q Consensus 428 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll 507 (533)
..++.-.+.++..+.+ .......++..+.+.++.++.-....+.|+.. +..+....+.+...++.+..+-
T Consensus 652 a~I~sv~~n~c~~~~~------~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~----~~~ei~~~~~~~~~~~~l~~~~ 721 (748)
T KOG4151|consen 652 AAITSVVENHCSRILE------LLEWLEILVRAIQDEDDEIQHRGLVIILNLFE----ALFEIAEKIFETEVMELLSGLQ 721 (748)
T ss_pred cchhhcchhhhhhHHH------hhcchHHHHHhhcCchhhhhhhhhhhhhhHHH----HHHHHHHHhccchHHHHHHHHH
Confidence 6666655544443222 13344678889999999999999999999553 4556667777777777776665
Q ss_pred cCCCCcHHHHHHHHHHHHhhh
Q 009514 508 NDPCLDVKLRVKTALEQFNSF 528 (533)
Q Consensus 508 ~~~~~~v~~~a~~aL~~~~~~ 528 (533)
.-.-...++.+...|.-+.++
T Consensus 722 ~~~~a~~~~~~~~~l~~a~~~ 742 (748)
T KOG4151|consen 722 KLNRAPKREDAAPCLSAAEEY 742 (748)
T ss_pred HhhhhhhhhhhhhHHHHHHHh
Confidence 433344556666666555443
No 155
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.75 E-value=1.3 Score=48.87 Aligned_cols=132 Identities=15% Similarity=0.143 Sum_probs=101.7
Q ss_pred HHHHHhhhC----CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCCh
Q 009514 360 ASLLASLIC----DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 435 (533)
Q Consensus 360 ~~~l~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~ 435 (533)
.|.++++.+ .++|++|..|.-+|..+.+-+.+ +... -++.|...+..++++-|+.++.-+++.++...+
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~----fces---~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAE----FCES---HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHH----HHHH---HHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 466666663 46799999999999888754321 2222 468888888877999999999999999998665
Q ss_pred hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHH
Q 009514 436 SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVK 515 (533)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~ 515 (533)
...+. .-+.+...|++.++.||+.|...|+.|.-+ ..+.-.|.++.+...+.|+++.++
T Consensus 994 nlie~------------~T~~Ly~rL~D~~~~vRkta~lvlshLILn---------dmiKVKGql~eMA~cl~D~~~~Is 1052 (1251)
T KOG0414|consen 994 NLIEP------------WTEHLYRRLRDESPSVRKTALLVLSHLILN---------DMIKVKGQLSEMALCLEDPNAEIS 1052 (1251)
T ss_pred cccch------------hhHHHHHHhcCccHHHHHHHHHHHHHHHHh---------hhhHhcccHHHHHHHhcCCcHHHH
Confidence 43332 236788999999999999999999999952 234457888899999999888888
Q ss_pred HHHH
Q 009514 516 LRVK 519 (533)
Q Consensus 516 ~~a~ 519 (533)
.-|.
T Consensus 1053 dlAk 1056 (1251)
T KOG0414|consen 1053 DLAK 1056 (1251)
T ss_pred HHHH
Confidence 7776
No 156
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.60 E-value=0.53 Score=45.30 Aligned_cols=195 Identities=19% Similarity=0.164 Sum_probs=111.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHH--hhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC--Ccch
Q 009514 317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM--ELTASLLASLICDPEPSVQEQALALVRNLVDG--RINS 392 (533)
Q Consensus 317 i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~--~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~ 392 (533)
+...+..+.......|..++..+.++....- ..+.+.+ .-.++.+.+.++.+..+-+..|+.++.-++-. ....
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~--~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRY--LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 3344455555668889999999988765321 1222222 12467777888777666777777777666543 2234
Q ss_pred HHHHHhhcCchHHHHHHHhccCC-chhHHHHHHHHHHHhcc---CChhhHHHHHHHhhHhhhhhhHH--HHHHhhcc---
Q 009514 393 VEYIFAEDGIILDAVGRQLRIAS-KAEIEIQGMYVLGNVAT---GKESHKEAVMDQLLLRAENKAQS--CIIKFLQS--- 463 (533)
Q Consensus 393 ~~~i~~~~~~~~~~L~~~L~~~~-~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~~~~~~~--~lv~~L~~--- 463 (533)
...++.. +.+.|.+.+.+.. .+.++..++.+|+-++. ...+.....++ .+. ......+.
T Consensus 123 ~~ei~~~---~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~---------~le~if~~~~~~~~~~ 190 (309)
T PF05004_consen 123 SEEIFEE---LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME---------SLESIFLLSILKSDGN 190 (309)
T ss_pred HHHHHHH---HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH---------HHHHHHHHHhcCcCCC
Confidence 5566654 5677777777632 34566666666655433 33333332222 112 12222221
Q ss_pred -------CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514 464 -------NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 464 -------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~ 529 (533)
+++.+..+|+.+-+-|... -......... ...++.|..+|++++.+||..|..+|.-+.+.+
T Consensus 191 ~~~~~~~~~~~l~~aAL~aW~lLlt~---~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~ 259 (309)
T PF05004_consen 191 APVVAAEDDAALVAAALSAWALLLTT---LPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELA 259 (309)
T ss_pred cccccCCCccHHHHHHHHHHHHHHhc---CCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 1245666665554444421 1111222222 335899999999999999999999999886654
No 157
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.44 Score=49.54 Aligned_cols=164 Identities=12% Similarity=0.114 Sum_probs=103.1
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhccCChHhHHH
Q 009514 275 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEE 353 (533)
Q Consensus 275 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~al~aL~~l~~~~~~~~~~~ 353 (533)
=+.+-+++.+.||-+|.....++..-=.+... .++|..|++. ..+.+.+||++|+.+|+-++.. +|+
T Consensus 521 d~lI~el~~dkdpilR~~Gm~t~alAy~GTgn-------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~-dp~---- 588 (929)
T KOG2062|consen 521 DPLIKELLRDKDPILRYGGMYTLALAYVGTGN-------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-DPE---- 588 (929)
T ss_pred HHHHHHHhcCCchhhhhhhHHHHHHHHhccCc-------hhhHHHhhcccccccchHHHHHHHHHheeeEec-Chh----
Confidence 34445577888999998888777532222222 3567777776 5567899999999999987764 332
Q ss_pred HHHhhcHHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514 354 IFMELTASLLASLIC-DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 354 i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 432 (533)
..+..+.+|. +-++.||-.++.+|+-.|.+.-... .+.+|-.+..+ +..-|++.|+-+++.+..
T Consensus 589 -----~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e---------Ai~lLepl~~D-~~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 589 -----QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE---------AINLLEPLTSD-PVDFVRQGALIALAMIMI 653 (929)
T ss_pred -----hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH---------HHHHHhhhhcC-hHHHHHHHHHHHHHHHHH
Confidence 2456666664 6789999999999988887653211 44445443443 777899998888777665
Q ss_pred CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh--hHHHHHH
Q 009514 433 GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS--RLRTAAV 473 (533)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~--~v~~~a~ 473 (533)
...+....-+ .++-+.+.+.+.+.+. -++..|+
T Consensus 654 Q~t~~~~pkv--------~~frk~l~kvI~dKhEd~~aK~GAi 688 (929)
T KOG2062|consen 654 QQTEQLCPKV--------NGFRKQLEKVINDKHEDGMAKFGAI 688 (929)
T ss_pred hcccccCchH--------HHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 3322221111 3444566666665443 3444444
No 158
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.53 E-value=0.23 Score=50.98 Aligned_cols=134 Identities=20% Similarity=0.218 Sum_probs=85.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514 232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF 311 (533)
Q Consensus 232 l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 311 (533)
...++..-+ ++...+.-|+..|..+....+.+ ....+..++.|++++|..+|..|...|-.++.+.++...
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l------~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~-- 95 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDL------QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS-- 95 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGG------HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH--
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhh------HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh--
Confidence 334444444 56788899999999988776654 345788999999999999999999999999987655443
Q ss_pred HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC---CCChhHHHHHHHHHHHhh
Q 009514 312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC---DPEPSVQEQALALVRNLV 386 (533)
Q Consensus 312 ~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~---~~~~~v~~~a~~~L~~l~ 386 (533)
.+...|+++|.++++.-...+-.+|..+.... + .+.+..+...+. ..+..+++.++..|+.-.
T Consensus 96 ---kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 96 ---KVADVLVQLLQTDDPVELDAVKNSLMSLLKQD-P--------KGTLTGLFSQIESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp ---HHHHHHHHHTT---HHHHHHHHHHHHHHHHH--H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred ---HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC-c--------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 45678999999888766666666776665432 2 122333333332 467788999988886443
No 159
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.51 E-value=0.51 Score=48.89 Aligned_cols=104 Identities=20% Similarity=0.223 Sum_probs=71.5
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcc-CChHhH
Q 009514 273 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL-AEDKCK 351 (533)
Q Consensus 273 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~-~~~~~~ 351 (533)
+.+..+++-..+++..||..++..|..+........+.+. .+....+..-+.+..+.+|..|+.+|+.+=.. .++++
T Consensus 85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~- 162 (892)
T KOG2025|consen 85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC- 162 (892)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc-
Confidence 4444455555678999999999999999864444433333 46667777777888899999999999998531 12111
Q ss_pred HHHHHhhcHHHHHhhhC-CCChhHHHHHHHHHHH
Q 009514 352 EEIFMELTASLLASLIC-DPEPSVQEQALALVRN 384 (533)
Q Consensus 352 ~~i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L~~ 384 (533)
-....+..+++ |++++|+..++..+..
T Consensus 163 ------~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 163 ------PVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred ------cHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 13445566664 8899999888755443
No 160
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.46 E-value=0.0057 Score=36.10 Aligned_cols=30 Identities=30% Similarity=0.574 Sum_probs=26.2
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 009514 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRS 260 (533)
Q Consensus 231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~ 260 (533)
++|.+++++++++++||.+|+.+|+.+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999998753
No 161
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.43 E-value=0.05 Score=56.78 Aligned_cols=232 Identities=15% Similarity=0.105 Sum_probs=157.2
Q ss_pred CcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCc--hhhhHHHHHHhhhcCCHH
Q 009514 100 TGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGR--VGDEASFAFSSLIAEKED 177 (533)
Q Consensus 100 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~--~~~~a~~~L~~l~~~~~~ 177 (533)
..++...++.+.....+.-+..+..+|.- .. +... -.....++++...+..+.. -.+++..+++|+++.++.
T Consensus 502 k~~~~~aLlrl~~~q~e~akl~~~~aL~~--~i-~f~~---~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s 575 (748)
T KOG4151|consen 502 KPGGYEALLRLGQQQFEEAKLKWYHALAG--KI-DFPG---ERSYEVVKPLDSALHNDEKGLENFEALEALTNLASISES 575 (748)
T ss_pred cccHHHHHHHHHHHhchHHHHHHHHHHhh--hc-CCCC---CchhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchh
Confidence 35788889998888788888888887772 11 1111 1123566666666653322 246889999999988887
Q ss_pred HHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh-hchHHHHHHhcCCCCHHHHHHHHHHHHH
Q 009514 178 MQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS-LQVLKLVVDALAHDSSDVRSAACMCLRS 256 (533)
Q Consensus 178 ~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~-~~~l~~l~~~L~~~~~~v~~~a~~~L~~ 256 (533)
.++.+..+.+++.+-.++... ++..+.+++..+.+|.....-+...+++ ...++....++.........+++.++..
T Consensus 576 ~r~~i~ke~~~~~ie~~~~ee--~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~ 653 (748)
T KOG4151|consen 576 DRQKILKEKALGKIEELMTEE--NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAA 653 (748)
T ss_pred hHHHHHHHhcchhhHHHhhcc--cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccc
Confidence 776677777777766655443 4778889999999998776555566666 4577887778888888888888888876
Q ss_pred HhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHH
Q 009514 257 VSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNAL 336 (533)
Q Consensus 257 ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al 336 (533)
++....+.+........+...++.++.+++.++|......+.|+........+.+++...++.+..+-+-.....++.+.
T Consensus 654 I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~ 733 (748)
T KOG4151|consen 654 ITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAA 733 (748)
T ss_pred hhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhh
Confidence 65544555542123456677888899999999999999999997655555556666666666666544433233333333
Q ss_pred HHH
Q 009514 337 RAL 339 (533)
Q Consensus 337 ~aL 339 (533)
.+|
T Consensus 734 ~~l 736 (748)
T KOG4151|consen 734 PCL 736 (748)
T ss_pred hHH
Confidence 333
No 162
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=0.29 Score=51.67 Aligned_cols=231 Identities=12% Similarity=0.137 Sum_probs=143.6
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 009514 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST 310 (533)
Q Consensus 231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 310 (533)
.+...+..+.++.+.+|..+...|+.+.+.- ..+.. +...+++......|++.|+-+--.|...+..|+.-++
T Consensus 728 ~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~-~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~----- 800 (982)
T KOG4653|consen 728 PLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATL-IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP----- 800 (982)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhh-hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----
Confidence 4556666777888889999999999998752 22323 5678899999999999999999999998888875443
Q ss_pred HHHhCcHHHHHH-hhcCCC---HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514 311 FIRLGGVKLLVQ-LSKSMD---STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV 386 (533)
Q Consensus 311 ~~~~~~i~~L~~-ll~~~~---~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~ 386 (533)
..++|.+.+ +....+ .+.+...=.++.++....++-. ....+ -.+.......++++...|..++..++++|
T Consensus 801 ---e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~-~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lc 875 (982)
T KOG4653|consen 801 ---EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELV-FKYKA-VLINTFLSGVREPDHEFRASSLANLGQLC 875 (982)
T ss_pred ---hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHH-HHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHH
Confidence 356677776 433321 2333333356666654333211 11111 22344555667888888999999999998
Q ss_pred cCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc-CC
Q 009514 387 DGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-ND 465 (533)
Q Consensus 387 ~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~-~~ 465 (533)
....-.....+.+ +...+......+.++-++.+|...+..+-.|.....-.+... ...+....+..+.+. ++
T Consensus 876 q~~a~~vsd~~~e---v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~----~l~Dl~~tl~~~vr~~~d 948 (982)
T KOG4653|consen 876 QLLAFQVSDFFHE---VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRL----LLIDLDETLLSYVRQHDD 948 (982)
T ss_pred HHHhhhhhHHHHH---HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHH----HHHHHHHHHHHHHhcCch
Confidence 6543222333322 455666666666788899999999998887654222222210 012222333334443 45
Q ss_pred hhHHHHHHHHHHhhc
Q 009514 466 SRLRTAAVWAVLNLT 480 (533)
Q Consensus 466 ~~v~~~a~~~L~~l~ 480 (533)
..++..|+.++-.+-
T Consensus 949 d~~klhaql~leei~ 963 (982)
T KOG4653|consen 949 DGLKLHAQLCLEEIQ 963 (982)
T ss_pred hHHHHHHHHHHHHHH
Confidence 567777777765443
No 163
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=2.3 Score=46.92 Aligned_cols=229 Identities=14% Similarity=0.153 Sum_probs=132.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHhhccccccchhhhh---cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHh
Q 009514 238 ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMN---ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL 314 (533)
Q Consensus 238 ~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~---~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~ 314 (533)
+.++.+..+|..+-+.|..++...+ ... +.+ ..+...|.+-+++.+.-.+...+.+|..+....+..-..++..
T Consensus 662 ~e~~~~~~vQkK~yrlL~~l~~~~s--~~~-~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k 738 (1176)
T KOG1248|consen 662 FENSSSTKVQKKAYRLLEELSSSPS--GEG-LVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPK 738 (1176)
T ss_pred hhccccHHHHHHHHHHHHHHhcCCc--hhh-HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3345688999999999999987621 111 111 1223334444556677788888888888876554222233333
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhc--cC--ChHhH-HHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514 315 GGVKLLVQLSKSMDSTIRLNALRALRNLIF--LA--EDKCK-EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 389 (533)
Q Consensus 315 ~~i~~L~~ll~~~~~~~~~~al~aL~~l~~--~~--~~~~~-~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~ 389 (533)
.+.+.++.+ +..+...|+++..+|..++. .. ..+.+ ...+++. +..+...+-.+...+....+-+++.+....
T Consensus 739 ~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnef-l~~Isagl~gd~~~~~as~Ivai~~il~e~ 816 (1176)
T KOG1248|consen 739 LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEF-LSIISAGLVGDSTRVVASDIVAITHILQEF 816 (1176)
T ss_pred HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHH-HHHHHhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 334444444 77888899999999988861 10 00111 2222222 222222222233333322233444443221
Q ss_pred cchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHH
Q 009514 390 INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR 469 (533)
Q Consensus 390 ~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~ 469 (533)
.+....-.-+. +++.+...|.+ .++++...|+..+.-+....+... +.. +...++|.+..++++....+|
T Consensus 817 ~~~ld~~~l~~--li~~V~~~L~s-~sreI~kaAI~fikvlv~~~pe~~---l~~----~~~~LL~sll~ls~d~k~~~r 886 (1176)
T KOG1248|consen 817 KNILDDETLEK--LISMVCLYLAS-NSREIAKAAIGFIKVLVYKFPEEC---LSP----HLEELLPSLLALSHDHKIKVR 886 (1176)
T ss_pred hccccHHHHHH--HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHcCCHHH---Hhh----hHHHHHHHHHHHHHhhhHHHH
Confidence 11111111111 66777777777 899999999999988888766322 111 124578888888888888999
Q ss_pred HHHHHHHHhhcC
Q 009514 470 TAAVWAVLNLTC 481 (533)
Q Consensus 470 ~~a~~~L~~l~~ 481 (533)
..+-..+-.|..
T Consensus 887 ~Kvr~LlekLir 898 (1176)
T KOG1248|consen 887 KKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHHHH
Confidence 999888888884
No 164
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.29 E-value=1.3 Score=43.53 Aligned_cols=221 Identities=15% Similarity=0.171 Sum_probs=141.3
Q ss_pred HHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc-----c----ccchhhhhcCcHH
Q 009514 206 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK-----N----LSAGSFMNETIVI 276 (533)
Q Consensus 206 ~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~-----~----~~~~~~~~~~~i~ 276 (533)
...+.-+..++.. |+.-..+++.++++.++++|.|.|.++-.+....+..++...- + +-.. +++.++++
T Consensus 102 hd~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLida-Lvdg~vla 179 (536)
T KOG2734|consen 102 HDIIQEMHVLATM-PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDA-LVDGQVLA 179 (536)
T ss_pred HHHHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHH-HHhccHHH
Confidence 3345555555543 5666778899999999999999999999999999999975411 1 1112 46778888
Q ss_pred HHHHhhcCCCH------HHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhccCCh
Q 009514 277 PLVRLLDDTST------AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAED 348 (533)
Q Consensus 277 ~Lv~lL~~~~~------~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~~al~aL~~l~~~~~~ 348 (533)
.|++-++.-|. .-...+...+-|++.-.+...+.+.+.|.+..|+.-+.. +-..-+..+...|.-+..+++
T Consensus 180 LLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~- 258 (536)
T KOG2734|consen 180 LLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSD- 258 (536)
T ss_pred HHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCc-
Confidence 88887753222 334556677778876556666677777877777654433 334557888888887766544
Q ss_pred HhHHHHHHhhcHHHHHhhhC-----CC----ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc-hHHHHHHHhccCCchh
Q 009514 349 KCKEEIFMELTASLLASLIC-----DP----EPSVQEQALALVRNLVDGRINSVEYIFAEDGI-ILDAVGRQLRIASKAE 418 (533)
Q Consensus 349 ~~~~~i~~~~~~~~l~~lL~-----~~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~-~~~~L~~~L~~~~~~~ 418 (533)
+.+...-...|++.+++-+. ++ +.+..++....|..+.- .++....++...|. .+.++.+ .+..
T Consensus 259 e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm-~~~nr~~Fl~~EGlqLm~Lmlr-----~Kk~ 332 (536)
T KOG2734|consen 259 ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLM-APANRERFLKGEGLQLMNLMLR-----EKKV 332 (536)
T ss_pred hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhc-ChhhhhhhhccccHHHHHHHHH-----HHHH
Confidence 35555555667888887663 21 23444454444444332 34556677776653 4444433 2334
Q ss_pred HHHHHHHHHHHhccCCh
Q 009514 419 IEIQGMYVLGNVATGKE 435 (533)
Q Consensus 419 v~~~a~~~L~~l~~~~~ 435 (533)
.+..++.+|-....|.+
T Consensus 333 sr~SalkvLd~am~g~~ 349 (536)
T KOG2734|consen 333 SRGSALKVLDHAMFGPE 349 (536)
T ss_pred hhhhHHHHHHHHHhCCC
Confidence 56677888877777654
No 165
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.24 E-value=0.0069 Score=35.75 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=25.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 009514 274 IVIPLVRLLDDTSTAVQVAALGAISNIVV 302 (533)
Q Consensus 274 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 302 (533)
++|.++++++|++++||..|+.+|++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 37889999999999999999999999874
No 166
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.23 E-value=0.5 Score=45.39 Aligned_cols=189 Identities=13% Similarity=0.103 Sum_probs=119.0
Q ss_pred CcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhH
Q 009514 273 TIVIPLV-RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK 351 (533)
Q Consensus 273 ~~i~~Lv-~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~ 351 (533)
+.+..|+ ..++++++.+|..|..+|+-.+.-+... . ...++.+...++.+++.++..|+.++..+...-+...-
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~----a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL----A-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH----H-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 4555554 5778999999999999999887644322 2 13366677777777899999999999987643222111
Q ss_pred H-------HHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchH-HHHHhhcCchHHHHH-HHhcc--CCchhHH
Q 009514 352 E-------EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV-EYIFAEDGIILDAVG-RQLRI--ASKAEIE 420 (533)
Q Consensus 352 ~-------~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~~~~~~~~L~-~~L~~--~~~~~v~ 420 (533)
. ........+.+.+.+.+.+++++..++..+..|.....-.- .. ++..|+ ..... ..++..+
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~-------vL~~Lll~yF~p~t~~~~~Lr 173 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPK-------VLSRLLLLYFNPSTEDNQRLR 173 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHH-------HHHHHHHHHcCcccCCcHHHH
Confidence 1 12223456778888888899999999999999875532111 11 333332 22222 1345677
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh------hH-HHHHHHHHHhhcC
Q 009514 421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS------RL-RTAAVWAVLNLTC 481 (533)
Q Consensus 421 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~------~v-~~~a~~~L~~l~~ 481 (533)
..-...+-.++..+..+. ..+. ..++|.+-.+.+.++. .+ -...+..+..++.
T Consensus 174 Q~L~~Ffp~y~~s~~~~Q-~~l~-------~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~ 233 (298)
T PF12719_consen 174 QCLSVFFPVYASSSPENQ-ERLA-------EAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD 233 (298)
T ss_pred HHHHHHHHHHHcCCHHHH-HHHH-------HHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence 777777788887766544 4444 5677887777764322 11 2345555555654
No 167
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.17 E-value=0.019 Score=45.77 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=57.4
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~ 480 (533)
++..|.++|..+.++.+..-||.-|+.++...+..+. +++ +.|+-..+++++.++|++||.+|..++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~-ii~------~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRN-IIE------KLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHH-HHH------HHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHH-HHH------hcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 7888888896657888889999999999987776555 444 3788899999999999999999999998775
No 168
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.16 E-value=0.015 Score=46.23 Aligned_cols=73 Identities=23% Similarity=0.387 Sum_probs=60.6
Q ss_pred cCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514 272 ETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 344 (533)
Q Consensus 272 ~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~ 344 (533)
...+..|+++|. +.|+.+...||.=|+.++...+..+..+-+.|+=..+++++.++|+++|..|+.++..+..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 346888999994 5688899999999999999888888777778888889999999999999999999987753
No 169
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=2.7 Score=45.48 Aligned_cols=447 Identities=13% Similarity=0.125 Sum_probs=221.9
Q ss_pred HHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC---------ChHHHHHHHHHHHHHhcCC---hhhhhhhccccCcc-
Q 009514 36 LGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---------SLIQRDASLESIATIFKNN---PEVVSQFVGPDTGR- 102 (533)
Q Consensus 36 ~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~---------~~~v~~~al~aL~~l~~~~---~~~~~~~~~~~~~~- 102 (533)
+|...+..+++.. .+. .-.|.++-++++|.+ +++-++-|+..++.++.-- ......+ ..
T Consensus 391 Aa~~~l~~~~~KR-~ke--~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-----E~f 462 (1010)
T KOG1991|consen 391 AALDFLTTLVSKR-GKE--TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-----EYF 462 (1010)
T ss_pred HHHHHHHHHHHhc-chh--hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-----HHH
Confidence 3455555565322 111 223456666777762 3477888999999987210 0000000 01
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-C-CCchhhhHHHHHHhhhcCCHHHHH
Q 009514 103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-D-PGRVGDEASFAFSSLIAEKEDMQK 180 (533)
Q Consensus 103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~-~~~~~~~a~~~L~~l~~~~~~~~~ 180 (533)
.+.-++..++++.--.|..|+..+..++... ..+...-..++..-.+.|. + .-+++.+|+.+|..+.++.+....
T Consensus 463 lv~hVfP~f~s~~g~Lrarac~vl~~~~~~d---f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e 539 (1010)
T KOG1991|consen 463 LVNHVFPEFQSPYGYLRARACWVLSQFSSID---FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADE 539 (1010)
T ss_pred HHHHhhHhhcCchhHHHHHHHHHHHHHHhcc---CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhh
Confidence 1223445678887788999999999888643 3344445567777777776 3 347899999999998887765433
Q ss_pred HHHH--cCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh--hchHHHHHHhcCC------CCHHHHHHH
Q 009514 181 LAFE--VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS--LQVLKLVVDALAH------DSSDVRSAA 250 (533)
Q Consensus 181 ~~~~--~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~--~~~l~~l~~~L~~------~~~~v~~~a 250 (533)
.+.. -+.++.|.++.+.. +-+.....+..+- +...++......+ ......+.+.+.. .+.+-..+|
T Consensus 540 ~~~~hvp~~mq~lL~L~ne~--End~Lt~vme~iV--~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA 615 (1010)
T KOG1991|consen 540 KVSAHVPPIMQELLKLSNEV--ENDDLTNVMEKIV--CKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAA 615 (1010)
T ss_pred hHhhhhhHHHHHHHHHHHhc--chhHHHHHHHHHH--HHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHH
Confidence 2221 12334455533322 1111111111111 1122222222111 2344555566552 233455667
Q ss_pred HHHHHHHhh---ccccccch-hhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC
Q 009514 251 CMCLRSVSR---SIKNLSAG-SFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS 326 (533)
Q Consensus 251 ~~~L~~ls~---~~~~~~~~-~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~ 326 (533)
.++|+.++. +.++.... +-.+.-+.|.+-.+|.+.-.++-+.++..+.++.....+....+ =|..+.+.+..+.
T Consensus 616 ~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~m--W~ll~li~e~~~~ 693 (1010)
T KOG1991|consen 616 SGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIM--WGLLELILEVFQD 693 (1010)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHH--HHHHHHHHHHHhh
Confidence 777766642 11222111 01233345555556777778888888888877765433322222 2556667777777
Q ss_pred CCHHHHHHHHHHHHHhhccCChHh-HHHHHHhhcHHHHHhhhCC--CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCch
Q 009514 327 MDSTIRLNALRALRNLIFLAEDKC-KEEIFMELTASLLASLICD--PEPSVQEQALALVRNLVDGRINSVEYIFAEDGII 403 (533)
Q Consensus 327 ~~~~~~~~al~aL~~l~~~~~~~~-~~~i~~~~~~~~l~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~ 403 (533)
...+.-....-+|.|......+.. +....-......+-.++.+ ....-.+.|+.++..+..+..+.+++.+.- .
T Consensus 694 ~~~dyf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~~dq~ipl---f 770 (1010)
T KOG1991|consen 694 DGIDYFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGLLDQYIPL---F 770 (1010)
T ss_pred hhHHHHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCcHhhHhHH---H
Confidence 767777778888888765433322 1111222233444445544 233344556666665554433333332211 2
Q ss_pred HHHHHHHhcc-CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHhhcC
Q 009514 404 LDAVGRQLRI-ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 404 ~~~L~~~L~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~-~~~v~~~a~~~L~~l~~ 481 (533)
++.....+.. ..+...+.-++.+..|...-++...-.++++.-. -.++.+...+.+... ...-++-++.+|..+..
T Consensus 771 ~~~a~~~l~~~~e~s~~~~~~leVvinalyynP~ltL~iLe~~~~--~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~ 848 (1010)
T KOG1991|consen 771 LELALSRLTREVETSELRVMLLEVVINALYYNPKLTLGILENQGF--LNNFFTLWFQFINQFKKVHDKKLCVLGLLTLIS 848 (1010)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHcCcHHHHHHHHHcCC--cccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 2222222222 2345566677776666555566555555553100 022334444443321 12233344444444442
Q ss_pred C-CCCCcHHHHHHHHHCCcHHHHHhhhc
Q 009514 482 S-SSPGSSGRLVKLHDAGIVSHVKNMVN 508 (533)
Q Consensus 482 ~-~~~~~~~~~~~l~~~g~~~~L~~ll~ 508 (533)
- ..+.. ..... .++.+.++.|+.
T Consensus 849 l~~~~~~---~~e~l-~~l~~~lv~L~~ 872 (1010)
T KOG1991|consen 849 LGQDPQL---PSEVL-GQLGPALVELLL 872 (1010)
T ss_pred ccccCCc---hHHHH-HHHHHHHHHHHH
Confidence 1 11111 12222 266778888775
No 170
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.90 E-value=0.55 Score=45.12 Aligned_cols=110 Identities=17% Similarity=0.245 Sum_probs=80.5
Q ss_pred chHHHHH-HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514 230 QVLKLVV-DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR 308 (533)
Q Consensus 230 ~~l~~l~-~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 308 (533)
+.+..++ ..+++.++.+|..|.+||+-.+--... .....++.+.+.++.++.+++..|+.++.-+...++...
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~------~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE------LAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 4444444 677899999999999999988765332 223456677887777799999999999998876543211
Q ss_pred -HH-------HHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 009514 309 -ST-------FIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL 345 (533)
Q Consensus 309 -~~-------~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~ 345 (533)
.. ......++.+.+.+.+.+++++..++..++.|...
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 11 11234667778888888999999999999998754
No 171
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.90 E-value=1.8 Score=41.94 Aligned_cols=202 Identities=11% Similarity=0.124 Sum_probs=136.1
Q ss_pred HHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhh-----hHhhhhh--chHHHHHHhcCCCCHHHHHHHHHH
Q 009514 181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC-----RSRCLSL--QVLKLVVDALAHDSSDVRSAACMC 253 (533)
Q Consensus 181 ~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~-----~~~~~~~--~~l~~l~~~L~~~~~~v~~~a~~~ 253 (533)
.+...+.+..|+..|..- +.+.|..+.....++....... ...+... .++..++..-+ ++++-..+-..
T Consensus 71 Ei~~~dll~~Li~~L~~L--~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~m 146 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKL--DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDM 146 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS---HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhC--CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHH
Confidence 455678888898888765 3667888888888776643222 2233332 45555655544 44555556666
Q ss_pred HHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhC---cHHHHHHhhcCCCHH
Q 009514 254 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG---GVKLLVQLSKSMDST 330 (533)
Q Consensus 254 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~ 330 (533)
|+...+. +...+. +.....+..+.+....++-++...|..++.-+...+......++..+ ....+..++.+++-.
T Consensus 147 lRec~k~-e~l~~~-iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv 224 (335)
T PF08569_consen 147 LRECIKH-ESLAKI-ILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYV 224 (335)
T ss_dssp HHHHTTS-HHHHHH-HHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred HHHHHhh-HHHHHH-HhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence 7777766 444444 56677888899999999999999999999988776655544555443 445667889999999
Q ss_pred HHHHHHHHHHHhhccCChH--hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514 331 IRLNALRALRNLIFLAEDK--CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 331 ~~~~al~aL~~l~~~~~~~--~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~ 388 (533)
+|..++..|+.+.....+- ....+-+...+..+..+|++++..+|..|..++--...+
T Consensus 225 tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 225 TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 9999999999997643321 123344455688889999999999999999887665544
No 172
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.82 Score=48.50 Aligned_cols=213 Identities=17% Similarity=0.099 Sum_probs=131.9
Q ss_pred chhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHH-
Q 009514 202 PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR- 280 (533)
Q Consensus 202 ~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~- 280 (533)
+.++-+++..|..+..+. .-...+...+++....+.+++.++-|-..|...+..|+.- +.+.++|-|.+
T Consensus 741 vpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev---------y~e~il~dL~e~ 810 (982)
T KOG4653|consen 741 VPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV---------YPEDILPDLSEE 810 (982)
T ss_pred ccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh---------cchhhHHHHHHH
Confidence 447889999999988643 2234566778999999999999999988888888777753 55677888877
Q ss_pred hhcC---CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHh
Q 009514 281 LLDD---TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME 357 (533)
Q Consensus 281 lL~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~ 357 (533)
..+. +-++.+...-.++.+++..-++....... -.+..+++...+++...|..++..+++++.-..-.....+.+
T Consensus 811 Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~e- 888 (982)
T KOG4653|consen 811 YLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFHE- 888 (982)
T ss_pred HHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHHH-
Confidence 3432 22455555557777776654443322222 456677777788888889999999999986432212222222
Q ss_pred hcHHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcchHHHHHhhc-CchHHHHHHHhccCCchhHHHHHHHHH
Q 009514 358 LTASLLASLIC-DPEPSVQEQALALVRNLVDGRINSVEYIFAED-GIILDAVGRQLRIASKAEIEIQGMYVL 427 (533)
Q Consensus 358 ~~~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~-~~~~~~L~~~L~~~~~~~v~~~a~~~L 427 (533)
...-++.+.. +++.-+|..|+..+..+..+.....-.+.... -.....+......++++.++.+++-++
T Consensus 889 -v~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l 959 (982)
T KOG4653|consen 889 -VLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL 959 (982)
T ss_pred -HHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 1223333333 67788999999999988876432221111111 002223333344445555665555544
No 173
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.90 E-value=0.087 Score=57.36 Aligned_cols=141 Identities=18% Similarity=0.248 Sum_probs=108.8
Q ss_pred hHHHHHHhcC----CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCc
Q 009514 231 VLKLVVDALA----HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFT 305 (533)
Q Consensus 231 ~l~~l~~~L~----~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~ 305 (533)
..|.+++..+ ..+|.++.+|.-+|+.+---....+ +.-+|.|+..|. ++++.+|..+.-+++-++..++
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fc------es~l~llftimeksp~p~IRsN~VvalgDlav~fp 993 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFC------ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP 993 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHH------HHHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence 5677777774 4679999999999988743212222 345788999997 8999999999999999998776
Q ss_pred hhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHh
Q 009514 306 TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 385 (533)
Q Consensus 306 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l 385 (533)
...+ -+-+.|.+.++++++.+|.+|+.+|.+|... ..+.-.|-+.-+..+|.|+++.++.-|=..+..+
T Consensus 994 nlie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILn------dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 994 NLIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILN------DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred cccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHh------hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 5442 3456788899999999999999999999652 3444557788889999999999988877666666
Q ss_pred hcC
Q 009514 386 VDG 388 (533)
Q Consensus 386 ~~~ 388 (533)
+..
T Consensus 1063 s~k 1065 (1251)
T KOG0414|consen 1063 SSK 1065 (1251)
T ss_pred hhc
Confidence 644
No 174
>PRK14707 hypothetical protein; Provisional
Probab=95.88 E-value=5.3 Score=47.12 Aligned_cols=437 Identities=12% Similarity=0.037 Sum_probs=212.7
Q ss_pred cccchHHHHhhhc--CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChh
Q 009514 15 QEENMEFLLSLLN--NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPE 90 (533)
Q Consensus 15 ~~~~i~~L~~lL~--~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~ 90 (533)
++.+|..+++-++ .++++++..+...-..++....-+.. ++..++...+.-|.. +..+..++..+++.=.-+++.
T Consensus 203 ~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~-~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~ 281 (2710)
T PRK14707 203 DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNE-LKPQELGNALNALSKWADTPVCAAAASALAERLVDDPG 281 (2710)
T ss_pred chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHh-CChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHH
Confidence 5677777777766 34454444444333456654433332 233344444444443 445777777676553334444
Q ss_pred hhhhhccccCcccHHHHHH-HHhcCChhh-HHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-C-CCchhhhHHH
Q 009514 91 VVSQFVGPDTGRTLSCIIE-IVKDRFART-RLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-D-PGRVGDEASF 166 (533)
Q Consensus 91 ~~~~~~~~~~~~~i~~l~~-ll~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~-~~~~~~~a~~ 166 (533)
...++. .-.+...+. +.|-++..+ +.+|......+.+.. . ... -.....+...+.-|+ - +..+...++.
T Consensus 282 l~~al~----~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~-~-l~~-~~~~~~~~~~LNalsKWpd~~~C~~Aa~ 354 (2710)
T PRK14707 282 LRKALD----PINVTQALNALSKWADLPVCAEAAIALAERLADDP-E-LCK-ALNARGLSTALNALSKWPDNPVCAAAVS 354 (2710)
T ss_pred HHHhcC----HHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccH-h-hhh-ccchHHHHHHHHHhhcCCCchhHHHHHH
Confidence 444331 223333333 445555554 444444444455432 1 111 122233444444454 2 3456777777
Q ss_pred HHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHH
Q 009514 167 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDV 246 (533)
Q Consensus 167 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v 246 (533)
.|+.=..++++..+ -.+..++...++-|..=+ +......+..+|..-..++.+.++.+-..|+-..|-.+-+=++..+
T Consensus 355 ~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp-~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~ 432 (2710)
T PRK14707 355 ALAERLVADPELRK-DLEPQGVSSVLNALSKWP-DTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPI 432 (2710)
T ss_pred HHHHHhccCHhhhc-ccchhHHHHHHhhhhcCC-CchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchh
Confidence 77755556666543 334556666666665543 3445666666776555567777776655555555444445566677
Q ss_pred HHHHHHHHH-HHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh
Q 009514 247 RSAACMCLR-SVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS 324 (533)
Q Consensus 247 ~~~a~~~L~-~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll 324 (533)
...++..|. .++.. ..+++. + +...+-..+..++ =+|..+...|+..|..-.......++.+--.++...|-.+.
T Consensus 433 C~~aa~~lA~~la~d-~~l~~~-~-~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLS 509 (2710)
T PRK14707 433 CGQAVSALAGRLAHD-TELCKA-L-DPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLS 509 (2710)
T ss_pred HHHHHHHHHHHHhcc-HHHHhh-c-ChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhh
Confidence 777777765 44544 455544 2 2222333444443 36666666666666554433344444444445556666666
Q ss_pred cCCCHHHH-HHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCch
Q 009514 325 KSMDSTIR-LNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGII 403 (533)
Q Consensus 325 ~~~~~~~~-~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~ 403 (533)
+-++.... ..+.|.-..+.. +....+.+-.......+-.+-+.++...-+.+...|.......+.... -++.. =
T Consensus 510 K~Pd~~~c~~A~~~lA~rl~~--~~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~~l~~~~~~~~-~L~aq--~ 584 (2710)
T PRK14707 510 KWPDTPICAEAASALAERVVD--ELQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAERLADEPQLPK-DLHRQ--G 584 (2710)
T ss_pred cCCCcHHHHHHHHHHHHHhcc--chhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHhhcchhhHH-hhhhh--H
Confidence 66664433 334444444432 111111111112122222233456556666666666655443332222 22222 2
Q ss_pred HHHHHHHhccCCchh-HHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHh
Q 009514 404 LDAVGRQLRIASKAE-IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLN 478 (533)
Q Consensus 404 ~~~L~~~L~~~~~~~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~-~~~~~v~~~a~~~L~~ 478 (533)
+..+.+-|+..++.. -+..+.|+-..+.. .+..+..+- ..-+..+++-|+ -++...+..++..|..
T Consensus 585 Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~-~~~lr~~l~--------~q~lan~lNALSKWP~s~~C~~Aa~rLA~ 652 (2710)
T PRK14707 585 VVIVLNALSKWPDTAVCAEAVNALAERLVD-EPDLRKELD--------PVDVTNVLNALSKWPGTEVCAEVARLLAG 652 (2710)
T ss_pred HHHHHHhhccCCCcHHHHHHHHHHHHHhcc-Chhhhhhcc--------HHHHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence 344555555545533 34444444444443 332223222 122233444443 3555666666666544
No 175
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=95.83 E-value=2 Score=46.04 Aligned_cols=274 Identities=12% Similarity=0.081 Sum_probs=153.7
Q ss_pred HhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHH
Q 009514 111 VKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVD 189 (533)
Q Consensus 111 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~ 189 (533)
..+..+.++..|++.++..++.... .-...+++..|+++..+ .+++..-.-++|+...+-+++... ..+....|
T Consensus 500 ~~~~~~~~ki~a~~~~~~~~~~~vl----~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P 574 (1005)
T KOG2274|consen 500 TMDVPPPVKISAVRAFCGYCKVKVL----LSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICP 574 (1005)
T ss_pred ccCCCCchhHHHHHHHHhccCceec----cccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhH
Confidence 3466677888888877776643321 12245778888888874 345555556777777777776532 33455567
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCC----HHHHHHHHHHHHHHhhcccccc
Q 009514 190 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS----SDVRSAACMCLRSVSRSIKNLS 265 (533)
Q Consensus 190 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~----~~v~~~a~~~L~~ls~~~~~~~ 265 (533)
.++.++...+.+|.+...+-..+..++.. ..+... ...-.+|.++..|+.+. ......++..|..+-+..++.-
T Consensus 575 ~~i~lF~k~s~DP~V~~~~qd~f~el~q~-~~~~g~-m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL 652 (1005)
T KOG2274|consen 575 LTINLFLKYSEDPQVASLAQDLFEELLQI-AANYGP-MQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL 652 (1005)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHH-HHhhcc-hHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence 77887766656776666665555555532 111111 12247999999998765 6788888888887877654432
Q ss_pred chhhhhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcH------HHHHHhhcCCCHH-HHHHHHH
Q 009514 266 AGSFMNETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGV------KLLVQLSKSMDST-IRLNALR 337 (533)
Q Consensus 266 ~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i------~~L~~ll~~~~~~-~~~~al~ 337 (533)
.. ..-.-..|++.+.. .++|.++...+..+|+.+.....+..-.-...++. ..+-++|.....+ .-..+=.
T Consensus 653 ~~-~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~ 731 (1005)
T KOG2274|consen 653 PN-LLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGP 731 (1005)
T ss_pred cH-HHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhH
Confidence 22 23344567777755 56788999999999998886543322111122222 2333444432211 1111112
Q ss_pred HHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchH
Q 009514 338 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV 393 (533)
Q Consensus 338 aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 393 (533)
.+..+..+.+.+... -++......+.++-.-....+....+.++..|...+.+..
T Consensus 732 lV~tLit~a~~el~~-n~d~IL~Avisrmq~ae~lsviQsLi~VfahL~~t~~~~~ 786 (1005)
T KOG2274|consen 732 LVLTLITHASSELGP-NLDQILRAVISRLQQAETLSVIQSLIMVFAHLVHTDLDQL 786 (1005)
T ss_pred HHHHHHHHHHHHhch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhCCHHHH
Confidence 222222222111110 0111112334445555666777777788888887765543
No 176
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.79 E-value=0.26 Score=52.40 Aligned_cols=190 Identities=19% Similarity=0.232 Sum_probs=124.4
Q ss_pred hHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHH--------HHH----HcCcHHHHHHhhhcCCCCchhHHHHHHHHH
Q 009514 146 LINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQK--------LAF----EVNGVDKLYNHLQKGSLHPRRFEGILLALA 213 (533)
Q Consensus 146 ~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~--------~~~----~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~ 213 (533)
+...|+.+|++ +++-..++.++.-+..|.+...+ +.+ =+..+|.|++.+... +...+..-+.+|.
T Consensus 816 ia~klld~Ls~-~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~--~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 816 IAEKLLDLLSG-PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETA--PGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHHhcCC-ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccC--CccchhHHHHHHH
Confidence 34455666654 33444566666666665554321 111 245678888877733 3567788888888
Q ss_pred HhhccchhhhHhhhh--hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC---HH
Q 009514 214 DMCSKLECCRSRCLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS---TA 288 (533)
Q Consensus 214 ~l~~~~~~~~~~~~~--~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~---~~ 288 (533)
++-.+-|. ..+.. ...+|.+++.|+-++..+|..+..++.-+....+.+... .-..++|.++.+=++.+ ..
T Consensus 893 hVl~~vP~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~--~~~Tlvp~lLsls~~~~n~~~~ 968 (1030)
T KOG1967|consen 893 HVLTNVPK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTE--HLSTLVPYLLSLSSDNDNNMMV 968 (1030)
T ss_pred HHHhcCCH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchH--HHhHHHHHHHhcCCCCCcchhH
Confidence 88765443 22222 258999999999999999999999998775543443332 33456777776666554 68
Q ss_pred HHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009514 289 VQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 342 (533)
Q Consensus 289 v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l 342 (533)
||..|..+|..+....+...-...+..++..|...+.++..-+|..|..+=.+.
T Consensus 969 VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 969 VREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhh
Confidence 999999999999873333222333456778888888887777888887765543
No 177
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.78 E-value=0.084 Score=54.47 Aligned_cols=191 Identities=20% Similarity=0.191 Sum_probs=132.5
Q ss_pred HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc
Q 009514 312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 391 (533)
Q Consensus 312 ~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 391 (533)
.+.+.+|.++++.+..+..+|..-+.-+-+...+- .+.+++.-.++.+...+.+.++.++++.+..+..++..-.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~L----t~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~- 401 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHL----TKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLS- 401 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhc----CHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhc-
Confidence 45678999999999999888887666665554433 3466677788999999999999999999988888774321
Q ss_pred hHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHH
Q 009514 392 SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRT 470 (533)
Q Consensus 392 ~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~ 470 (533)
...++.. ++..+.+.-. +.+..++....-+|+.++.. .+..|+.++. ..+.+-++++-...|.
T Consensus 402 --~~~Ln~E--llr~~ar~q~-d~~~~irtntticlgki~~~l~~~~R~~vL~-----------~aftralkdpf~paR~ 465 (690)
T KOG1243|consen 402 --KRNLNGE--LLRYLARLQP-DEHGGIRTNTTICLGKIAPHLAASVRKRVLA-----------SAFTRALKDPFVPARK 465 (690)
T ss_pred --hhhhcHH--HHHHHHhhCc-cccCcccccceeeecccccccchhhhccccc-----------hhhhhhhcCCCCCchh
Confidence 1122222 6667755433 46677888887888887754 2333444432 3444567778788899
Q ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514 471 AAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 471 ~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
++.+++..-...- . . .. +...++|.+..+.-|+++.++..|..++..+..-.+
T Consensus 466 a~v~~l~at~~~~--~---~-~~-va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~ 518 (690)
T KOG1243|consen 466 AGVLALAATQEYF--D---Q-SE-VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLE 518 (690)
T ss_pred hhhHHHhhccccc--c---h-hh-hhhhccccccccccCcccchhhHHHHHHHHHHhhhh
Confidence 9998887655310 1 1 11 234578899999999999999999998887755433
No 178
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.76 E-value=4.9 Score=45.76 Aligned_cols=110 Identities=19% Similarity=0.207 Sum_probs=72.6
Q ss_pred cCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCC
Q 009514 57 AGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 135 (533)
Q Consensus 57 ~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 135 (533)
.+.+..|+..|.. ...+|.+|++||+.+...+|.+.. ....-..+-.-+.+....||.+|+..+.......++
T Consensus 815 D~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~------~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 815 DPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLS------RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhc------CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHH
Confidence 4466777777875 568999999999999988877631 234455566677788889999999998876654432
Q ss_pred cchhhhhHhhhHHHHH-HhcCCCCchhhhHHHHHHhhhcCCHHH
Q 009514 136 YLQDVGIKTKLINNLL-ELLDDPGRVGDEASFAFSSLIAEKEDM 178 (533)
Q Consensus 136 ~~~~~~~~~~~i~~L~-~ll~~~~~~~~~a~~~L~~l~~~~~~~ 178 (533)
. .. .....+. ++++.+..||..+...+..+....++.
T Consensus 889 ~-~~-----qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf 926 (1692)
T KOG1020|consen 889 L-IF-----QYYDQIIERILDTGVSVRKRVIKILRDICEETPDF 926 (1692)
T ss_pred H-HH-----HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCCh
Confidence 1 11 1112222 222234567777777777777666554
No 179
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.76 E-value=0.17 Score=43.34 Aligned_cols=139 Identities=18% Similarity=0.225 Sum_probs=97.1
Q ss_pred CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHH
Q 009514 326 SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILD 405 (533)
Q Consensus 326 ~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~ 405 (533)
...+++|..++-++..+.. ..+.-.....-+.+..++...+.+-...++.++..+....++....++...| +++
T Consensus 16 ~~~~~~r~~a~v~l~k~l~-----~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg-~~~ 89 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLD-----AAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEG-FLE 89 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTT-HHH
T ss_pred CCCHhHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhh-HHH
Confidence 3556789988888888731 2222233333455556666666667888999999999998888888876666 778
Q ss_pred HHHHHhc-cCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-cCChh-HHHHHHHHHHhh
Q 009514 406 AVGRQLR-IASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSR-LRTAAVWAVLNL 479 (533)
Q Consensus 406 ~L~~~L~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~-~~~~~-v~~~a~~~L~~l 479 (533)
.+..... ...+..++..++.+|..-+ .++..|..+.+ +.++.|.+.++ +++.. +|..|+.+|..+
T Consensus 90 ~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~~I~~--------~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 90 SLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRTFISK--------NYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp HHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHHCCHH--------HCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHHHHHH--------HHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 8887777 2266778888888886544 56667777764 56689999995 55566 888888877653
No 180
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.72 E-value=0.1 Score=44.63 Aligned_cols=148 Identities=21% Similarity=0.190 Sum_probs=94.5
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccch
Q 009514 188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAG 267 (533)
Q Consensus 188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~ 267 (533)
+..++..|.....++++|..+.-++..+- +..+... ..-.-+.+-..+..++.+-...+..++..+-...+.....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 44566666542235778888888888773 2222222 2223344444455544445566677777664444444444
Q ss_pred hhhhcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc-CCCHH-HHHHHHHHHHH
Q 009514 268 SFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDST-IRLNALRALRN 341 (533)
Q Consensus 268 ~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~-~~~~al~aL~~ 341 (533)
.+...|+++.++.++. ..+..++..++.+|..-+ ....++..+. .++++.|-+..+ ++++. +|..|+-.|+.
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~~I~-~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRTFIS-KNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHHCCH-HHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHHHHH-HHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 3567899999999998 788999999999997666 4555665555 567899999985 45565 78777766654
No 181
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.61 E-value=1.8 Score=42.89 Aligned_cols=175 Identities=15% Similarity=0.157 Sum_probs=104.3
Q ss_pred CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHH
Q 009514 286 STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLA 364 (533)
Q Consensus 286 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~ 364 (533)
..+-+..|..-|..+.....-....-.-..++..+++.+.+ .++..+.-|++.|..++.+.. .+..-..+.++.-++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~--~~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP--ARLFDSTEIAICKVL 377 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch--HhhhchHHHHHHHHH
Confidence 45566777775555544332211111112456667777777 677789999999999987543 121112234455555
Q ss_pred hhhCCCChhHHHHHHHH-HHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHH
Q 009514 365 SLICDPEPSVQEQALAL-VRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMD 443 (533)
Q Consensus 365 ~lL~~~~~~v~~~a~~~-L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 443 (533)
+.-.+++.++...|... ++-++...|.. .+..+..++.+ .+...-..++..+..+..+-. .+.+..
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P~~----------~I~~i~~~Ilt-~D~~~~~~~iKm~Tkl~e~l~--~EeL~~ 444 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLPLQ----------CIVNISPLILT-ADEPRAVAVIKMLTKLFERLS--AEELLN 444 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCchh----------HHHHHhhHHhc-CcchHHHHHHHHHHHHHhhcC--HHHHHH
Confidence 55667777766666543 44444444421 23334444444 455555566666666665432 222221
Q ss_pred HhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514 444 QLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 444 ~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~ 480 (533)
++ .++.|.+++...+....||+.|++||-.+.
T Consensus 445 -ll----~diaP~~iqay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 445 -LL----PDIAPCVIQAYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred -hh----hhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence 11 478899999999999999999999998777
No 182
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.57 E-value=0.59 Score=49.93 Aligned_cols=186 Identities=17% Similarity=0.174 Sum_probs=120.1
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh-------------HHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 009514 273 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR-------------RSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL 339 (533)
Q Consensus 273 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~-------------~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL 339 (533)
.+...++.+|++ +++-..++.++.-+..+.+.. ++.+. ..++|.+++..+......|.+=+.+|
T Consensus 815 ~ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 815 EIAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEAL 891 (1030)
T ss_pred hHHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHH
Confidence 445567777765 455556666666555544332 22333 46889999888876777888888999
Q ss_pred HHhhccCChHhHHHHHHh--hcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhh-cCchHHHHHHHhccCCc
Q 009514 340 RNLIFLAEDKCKEEIFME--LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE-DGIILDAVGRQLRIASK 416 (533)
Q Consensus 340 ~~l~~~~~~~~~~~i~~~--~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~~~~~~~L~~~L~~~~~ 416 (533)
.+...+.+ ++.+... ...|.|++.|+-+|..+|-.+..++.-+..-.+. ++.+ -+.+++.+.. |.++++
T Consensus 892 shVl~~vP---~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~t----L~t~~~~Tlvp~lLs-ls~~~~ 963 (1030)
T KOG1967|consen 892 SHVLTNVP---KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESET----LQTEHLSTLVPYLLS-LSSDND 963 (1030)
T ss_pred HHHHhcCC---HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccc----cchHHHhHHHHHHHh-cCCCCC
Confidence 99877554 2344332 3468888888889999988888877766533221 1111 1225555544 333233
Q ss_pred ---hhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHH
Q 009514 417 ---AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476 (533)
Q Consensus 417 ---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L 476 (533)
..|+..|+..|..++..-|...-.-+. ..++..++..|.++...||++|+.+=
T Consensus 964 n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr-------~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 964 NNMMVVREDALQCLNALTRRLPTKSLLSFR-------PLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred cchhHHHHHHHHHHHHHhccCCCccccccc-------HHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 468999999999998744421111111 45678899999999999999998653
No 183
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=95.29 E-value=3.1 Score=40.41 Aligned_cols=204 Identities=12% Similarity=0.079 Sum_probs=136.9
Q ss_pred hhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccc---hhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHH
Q 009514 225 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA---GSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNI 300 (533)
Q Consensus 225 ~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~---~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl 300 (533)
.+...+.+..++..|..-+-+.|..++.+..++-+...+.+. ........-+.|..+++ .+++++...+...|+..
T Consensus 71 Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec 150 (335)
T PF08569_consen 71 EIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLREC 150 (335)
T ss_dssp HHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 455668899999999999999999999999998765333221 10111111222333333 34677788888888888
Q ss_pred hcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhh---cHHHHHhhhCCCChhHHHH
Q 009514 301 VVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL---TASLLASLICDPEPSVQEQ 377 (533)
Q Consensus 301 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~---~~~~l~~lL~~~~~~v~~~ 377 (533)
+. ++...+.++....+..+.++.+.++-++-..|..++..+... .+..-...+... .......+|.++++-.+.+
T Consensus 151 ~k-~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq 228 (335)
T PF08569_consen 151 IK-HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ 228 (335)
T ss_dssp TT-SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred Hh-hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence 75 456666888888888899999999999999999999987653 222323333322 3456788999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHhhc--CchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514 378 ALALVRNLVDGRINSVEYIFAED--GIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 378 a~~~L~~l~~~~~~~~~~i~~~~--~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 432 (533)
++..|+.+..+.. ....+...- ..-+..++.+|.+ ++..++-.|..+.--+.+
T Consensus 229 slkLL~ellldr~-n~~vm~~yi~~~~nLkl~M~lL~d-~sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 229 SLKLLGELLLDRS-NFNVMTRYISSPENLKLMMNLLRD-KSKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp HHHHHHHHHHSGG-GHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHchh-HHHHHHHHHCCHHHHHHHHHHhcC-cchhhhHHHHHHHHHHHh
Confidence 9999999987643 233222221 1256777788887 888899999988866555
No 184
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.45 Score=47.96 Aligned_cols=98 Identities=14% Similarity=0.137 Sum_probs=73.4
Q ss_pred cHHHHHhh-hCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhh
Q 009514 359 TASLLASL-ICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESH 437 (533)
Q Consensus 359 ~~~~l~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 437 (533)
.+..++.. .++.+.+|+..|+.+|.-+|+.+++ .+.-.+++|..+-++.|+...+.+|+-.+.+.-+
T Consensus 552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-----------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~- 619 (926)
T COG5116 552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-----------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD- 619 (926)
T ss_pred hHhhhheeecccCchHHHHHHHHheeeeEecCcc-----------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc-
Confidence 45556665 6788999999999999999988765 3344446666667899999999999877776532
Q ss_pred HHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 438 KEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
+..+ ..|-.+..+++.-||..|+-+++.+..
T Consensus 620 -~~a~------------diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 620 -KVAT------------DILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred -HHHH------------HHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 1122 345566678888899999999988875
No 185
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=94.99 E-value=0.34 Score=50.17 Aligned_cols=188 Identities=13% Similarity=0.126 Sum_probs=122.8
Q ss_pred HcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccc
Q 009514 184 EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN 263 (533)
Q Consensus 184 ~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~ 263 (533)
..+.+|.|++++...+ ..+|..-+.-+-. +-+...+++++..++|.+...+.+.++.+|+.+.+++..++.....
T Consensus 328 q~~i~p~l~kLF~~~D--r~iR~~LL~~i~~---~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 328 QVRIIPVLLKLFKSPD--RQIRLLLLQYIEK---YIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred ccchhhhHHHHhcCcc--hHHHHHHHHhHHH---HhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhch
Confidence 3466899999887653 4555544433333 3345556678888999999999999999999999999888644221
Q ss_pred ccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514 264 LSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 343 (533)
Q Consensus 264 ~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~ 343 (533)
. ......+..+-.+-.+++..++....-+|+.++....... .+.-.+..+.+.++++-..-|.++++++....
T Consensus 403 ---~-~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 403 ---R-NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred ---h-hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 1 1223334444444446778888888888888875433221 22223455667777777777899888887654
Q ss_pred ccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514 344 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 387 (533)
Q Consensus 344 ~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~ 387 (533)
..-+ ..-+....++.+..+.-+++..++..+..++.....
T Consensus 476 ~~~~----~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~ 515 (690)
T KOG1243|consen 476 EYFD----QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE 515 (690)
T ss_pred cccc----hhhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence 3222 112223356777777788888888888777765543
No 186
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.96 E-value=2.6 Score=41.81 Aligned_cols=101 Identities=13% Similarity=0.207 Sum_probs=77.4
Q ss_pred hhh-cCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc-C---CCHHHHHHHHHHHH
Q 009514 269 FMN-ETIVIPLVRLLDDT---STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-S---MDSTIRLNALRALR 340 (533)
Q Consensus 269 ~~~-~~~i~~Lv~lL~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~---~~~~~~~~al~aL~ 340 (533)
+.+ ...+..|..++++. .+.+-..|+..+..+..+.+.....+.+.|.++.+++.+. . ++.++...--.+++
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 355 55566777788765 5789999999999999888888888999999999998777 3 34566666667777
Q ss_pred HhhccCChHhHHHHHHhhcHHHHHhhhCCCC
Q 009514 341 NLIFLAEDKCKEEIFMELTASLLASLICDPE 371 (533)
Q Consensus 341 ~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~ 371 (533)
.+|-+ ....+.+.+...++.+++++.+++
T Consensus 181 AicLN--~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 181 AICLN--NRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HHhcC--HHHHHHHHhcChHHHHHHHhCCHH
Confidence 77764 457788888888899988887654
No 187
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.92 E-value=2.8 Score=37.93 Aligned_cols=141 Identities=12% Similarity=0.130 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHh
Q 009514 291 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-----MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS 365 (533)
Q Consensus 291 ~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ 365 (533)
..+...+.-++. .++-+..+.++..=--+..++.. +.+.+|..+++.++.+....+.+.-..+.....++..++
T Consensus 97 cnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 344444444554 45566677776644444555543 357799999999999999888888888899999999999
Q ss_pred hhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc------CchHHHHHHHhccCCchhHHHHHHHHHHHhccC
Q 009514 366 LICDPEPSVQEQALALVRNLVDGRINSVEYIFAED------GIILDAVGRQLRIASKAEIEIQGMYVLGNVATG 433 (533)
Q Consensus 366 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~------~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~ 433 (533)
.++.++..-+.-|..++..+..++.. ..++.... +.++..++..+.+.+++....+++++..+++..
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~G-L~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVG-LYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhcccc-HHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999988876542 33332211 113344444444447777788888888888753
No 188
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.46 Score=47.91 Aligned_cols=127 Identities=15% Similarity=0.098 Sum_probs=81.3
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhh
Q 009514 280 RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL 358 (533)
Q Consensus 280 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~ 358 (533)
+++.+.++-+|.....+++---.+.. ..|++..+++. ..+.++++|++|+.||+-.|.... .
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~----------~ 585 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR----------D 585 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCc----------c
Confidence 34445555555555554432111111 13566777776 566789999999999998776432 2
Q ss_pred cHHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccC
Q 009514 359 TASLLASLIC-DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG 433 (533)
Q Consensus 359 ~~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~ 433 (533)
.+...+++|. +.++.|+....-+|.-.|.+..+.. ..+.|-.++.+ +.+-|++.|+-+++.+...
T Consensus 586 ~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~---------a~diL~~L~~D-~~dfVRQ~AmIa~~mIl~Q 651 (926)
T COG5116 586 LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV---------ATDILEALMYD-TNDFVRQSAMIAVGMILMQ 651 (926)
T ss_pred hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH---------HHHHHHHHhhC-cHHHHHHHHHHHHHHHHhh
Confidence 3455666664 6688999888888887776643221 45555555555 7788999999888877754
No 189
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.78 E-value=3 Score=37.70 Aligned_cols=138 Identities=15% Similarity=0.177 Sum_probs=97.5
Q ss_pred HHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-----CCCHHHHHHHHHHHHHHhcCC-chhHHHHHHhCcHHHHHH
Q 009514 249 AACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-----DTSTAVQVAALGAISNIVVDF-TTRRSTFIRLGGVKLLVQ 322 (533)
Q Consensus 249 ~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-----~~~~~v~~~a~~aL~nl~~~~-~~~~~~~~~~~~i~~L~~ 322 (533)
.+...+..++.+ +..+.. |.++.+.-.|..+|. .+.+-+|..+++.|+.+.... .+....+.+.+++|..++
T Consensus 98 naL~LlQcvASH-pdTr~~-FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 98 NALALLQCVASH-PDTRRA-FLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHhcC-cchHHH-HHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 344444455555 666766 888887777777774 357789999999999998744 345567788999999999
Q ss_pred hhcCCCHHHHHHHHHHHHHhhccCCh-H------hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514 323 LSKSMDSTIRLNALRALRNLIFLAED-K------CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 323 ll~~~~~~~~~~al~aL~~l~~~~~~-~------~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~ 388 (533)
.+..+++..+..|...+..+..+... . .|...+....-..+..+.+.++..+...++++..+++.+
T Consensus 176 ime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn 248 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN 248 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999987653321 1 111122222223344556778888888889888888866
No 190
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.70 E-value=7.9 Score=42.09 Aligned_cols=129 Identities=11% Similarity=0.096 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhh
Q 009514 372 PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAEN 451 (533)
Q Consensus 372 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 451 (533)
+.++..+.-+|+++|..+...... .++.|++-|.-+....++-+..-+++.++..-. .++ .
T Consensus 945 ~~vra~~vvTlakmcLah~~LaKr-------~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~--------d 1005 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLAKR-------LMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMT--------D 1005 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHH-------HHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHH--------H
Confidence 467888888999998775432222 678888878765556677776666666664322 122 3
Q ss_pred hhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCc-HHHHHhhhcCCCCcHHHHHHHHHHHHhhh
Q 009514 452 KAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI-VSHVKNMVNDPCLDVKLRVKTALEQFNSF 528 (533)
Q Consensus 452 ~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~-~~~L~~ll~~~~~~v~~~a~~aL~~~~~~ 528 (533)
-.+|.+...|.++++-+|.++.-.|++|... +- +.=.|. +-.++--+-|.+++++.-|...++.+.+.
T Consensus 1006 ~YiP~I~~~L~Dp~~iVRrqt~ilL~rLLq~---~~------vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1006 RYIPMIAASLCDPSVIVRRQTIILLARLLQF---GI------VKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HhhHHHHHHhcCchHHHHHHHHHHHHHHHhh---hh------hhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 5669999999999999999999999999952 11 111121 12233333456889998888888877654
No 191
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.58 E-value=3.4 Score=43.17 Aligned_cols=105 Identities=20% Similarity=0.196 Sum_probs=64.3
Q ss_pred hHhhhHHHHHHhcC-CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch
Q 009514 142 IKTKLINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE 220 (533)
Q Consensus 142 ~~~~~i~~L~~ll~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~ 220 (533)
+-.+.+-.+++... .+..+|..++..|+.+.....+....+++ +...++..-+.+. .|.+|-+|+.+|..+-.++.
T Consensus 82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Dr--ep~VRiqAv~aLsrlQ~d~~ 158 (892)
T KOG2025|consen 82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDR--EPNVRIQAVLALSRLQGDPK 158 (892)
T ss_pred HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhcc--CchHHHHHHHHHHHHhcCCC
Confidence 33455666666555 34678999999998887533222222222 2334444445554 37789999999998864321
Q ss_pred hhhHhhhhhchHHHHHHhcC-CCCHHHHHHHHHHH
Q 009514 221 CCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCL 254 (533)
Q Consensus 221 ~~~~~~~~~~~l~~l~~~L~-~~~~~v~~~a~~~L 254 (533)
+ -+..++..+..+++ +++++||.++...|
T Consensus 159 d-----ee~~v~n~l~~liqnDpS~EVRRaaLsnI 188 (892)
T KOG2025|consen 159 D-----EECPVVNLLKDLIQNDPSDEVRRAALSNI 188 (892)
T ss_pred C-----CcccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence 1 12245666666665 77999999887655
No 192
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=94.57 E-value=0.69 Score=39.98 Aligned_cols=116 Identities=16% Similarity=0.263 Sum_probs=78.0
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHh--cCchHHHHHhhcC--ChHHHHHHHHHHHHHh---cCCh
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFD--AGVLKRLTSLLGG--SLIQRDASLESIATIF---KNNP 89 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~--~g~i~~L~~lL~~--~~~v~~~al~aL~~l~---~~~~ 89 (533)
.-+..+.++|+++++.-+..++..+...+..... +.+.+ .-|+..++++|++ +..+.+.++.++..+. .+.|
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 3457788999999999999999999988854322 23323 3488899999986 4577888888888774 5556
Q ss_pred hhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCC
Q 009514 90 EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC 135 (533)
Q Consensus 90 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 135 (533)
+..+++....-...+..++.++++ ......+..+|..+....+.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 666665432223344445555554 55666777777777665543
No 193
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=94.55 E-value=4.1 Score=40.26 Aligned_cols=238 Identities=18% Similarity=0.174 Sum_probs=123.7
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCC-CH-HHHHHHHHHHHHHhhcccccc
Q 009514 188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD-SS-DVRSAACMCLRSVSRSIKNLS 265 (533)
Q Consensus 188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~-~~-~v~~~a~~~L~~ls~~~~~~~ 265 (533)
+.-+++-|... .+..+|..++..|+.-+. ++..+..+..+|..+.+++.+.+. +. ..-..++.++.-+++......
T Consensus 23 v~ylld~l~~~-~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESS-SSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH 100 (361)
T ss_pred HHHHHhhcccC-CCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence 44455556633 345677777777777765 578999999999999999999543 33 333444444445555422211
Q ss_pred chhhhhcCcHHHHHHhhc-C-C---CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh---c------CCCHHH
Q 009514 266 AGSFMNETIVIPLVRLLD-D-T---STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS---K------SMDSTI 331 (533)
Q Consensus 266 ~~~~~~~~~i~~Lv~lL~-~-~---~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll---~------~~~~~~ 331 (533)
. +.+.+....++.+++ + . ..+....-...+. ... .+....+.... . .....-
T Consensus 101 -l-~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~ls-----------k~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp 166 (361)
T PF07814_consen 101 -L-LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLS-----------KVQ-QKSRSLCKELLSSGSSWKSPKPPELSP 166 (361)
T ss_pred -h-hhchhHHHHHHHHhccccccccccchhhhhhhhhh-----------HHH-HHHHHHHHHHHhccccccccCCccccc
Confidence 1 234555666677776 1 1 0000000000010 000 01111111111 0 112223
Q ss_pred HHHHHHHHHHhhc-------------cCChHhHHHHHHhhcHHHHHhhhCC----C------------ChhHHHHHHHHH
Q 009514 332 RLNALRALRNLIF-------------LAEDKCKEEIFMELTASLLASLICD----P------------EPSVQEQALALV 382 (533)
Q Consensus 332 ~~~al~aL~~l~~-------------~~~~~~~~~i~~~~~~~~l~~lL~~----~------------~~~v~~~a~~~L 382 (533)
+.-|+.++-.++. ......|+++.+.|+++.++..+.+ . +......++.+|
T Consensus 167 ~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~IL 246 (361)
T PF07814_consen 167 QTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSIL 246 (361)
T ss_pred ccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHH
Confidence 4455555555531 0112246778888899999988752 1 123445677888
Q ss_pred HHhhcCCcchHHHHHhhcC-chHHHHHHHhccC--CchhHHHHHHHHHHHhccCChhhHHHH
Q 009514 383 RNLVDGRINSVEYIFAEDG-IILDAVGRQLRIA--SKAEIEIQGMYVLGNVATGKESHKEAV 441 (533)
Q Consensus 383 ~~l~~~~~~~~~~i~~~~~-~~~~~L~~~L~~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~ 441 (533)
-+.+..+.+...+.....+ .....+...+... ...+....+++.+.|++..+++..+.+
T Consensus 247 Es~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~ 308 (361)
T PF07814_consen 247 ESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEF 308 (361)
T ss_pred HHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhh
Confidence 8877666555555555432 2222222222220 233456788999999998775544433
No 194
>PRK14707 hypothetical protein; Provisional
Probab=94.14 E-value=16 Score=43.44 Aligned_cols=312 Identities=17% Similarity=0.138 Sum_probs=159.8
Q ss_pred ccchHHHHhhhc--CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhh
Q 009514 16 EENMEFLLSLLN--NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEV 91 (533)
Q Consensus 16 ~~~i~~L~~lL~--~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~ 91 (533)
...+..|++-++ .++.+++..+..+...+|..+.-+..+ ...+|..++.-+.. +..-...+...|.....+.+..
T Consensus 162 ~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l 240 (2710)
T PRK14707 162 AQNISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRL 240 (2710)
T ss_pred cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHH
Confidence 345667777776 467788888888878888666555444 33344444444443 2234455556665543333444
Q ss_pred hhhhccccCcccHHHHHH-HHhcCChhhHHHHHHHHH-HhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhhhHHHH
Q 009514 92 VSQFVGPDTGRTLSCIIE-IVKDRFARTRLLASLCLI-VIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFA 167 (533)
Q Consensus 92 ~~~~~~~~~~~~i~~l~~-ll~~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~~ 167 (533)
..++ +.-.+...+. +.|=++..+=..|+..+. .+.... . ....+ ...-+-..+.-|+. +..+...++..
T Consensus 241 ~~~~----~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~-~-l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~ 313 (2710)
T PRK14707 241 RNEL----KPQELGNALNALSKWADTPVCAAAASALAERLVDDP-G-LRKAL-DPINVTQALNALSKWADLPVCAEAAIA 313 (2710)
T ss_pred HHhC----ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhH-H-HHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHH
Confidence 3333 2334555544 445444433333333333 344321 1 12222 22223333344442 34566666655
Q ss_pred HHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC-CCCHHH
Q 009514 168 FSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDV 246 (533)
Q Consensus 168 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~-~~~~~v 246 (533)
|+.=..+++.+.+. ++..++...++-|..=......+. +..+|..=...+++.++.+- ..++..+++.++ =++..+
T Consensus 314 la~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~-Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~ 390 (2710)
T PRK14707 314 LAERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAA-AVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPV 390 (2710)
T ss_pred HHHHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHH-HHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchH
Confidence 55444456665432 233345555555554433344444 44444433335556655544 345555555554 345556
Q ss_pred HHHHHHHHH-HHhhccccccchhhhhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh
Q 009514 247 RSAACMCLR-SVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS 324 (533)
Q Consensus 247 ~~~a~~~L~-~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll 324 (533)
...++..|. .+... ..++.. .+...+...+.-| +=++..+...++.+|..-..+..+.++.+--.++...|-.+.
T Consensus 391 c~~aa~~LA~~l~~d-~~l~~~--~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalS 467 (2710)
T PRK14707 391 CAAAASALAEHVVDD-LELRKG--LDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALS 467 (2710)
T ss_pred HHHHHHHHHHHhccC-hhhhhh--cchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhh
Confidence 666666664 45544 555555 4444555555544 457888888888888766555555554444344444444455
Q ss_pred cCCCHHHHHHHHHHHHH
Q 009514 325 KSMDSTIRLNALRALRN 341 (533)
Q Consensus 325 ~~~~~~~~~~al~aL~~ 341 (533)
+=++..+...+...|..
T Consensus 468 KWPd~p~c~~aa~~La~ 484 (2710)
T PRK14707 468 KWPDTPICGQTASALAA 484 (2710)
T ss_pred cCCCChhHHHHHHHHHH
Confidence 55665655555555543
No 195
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.92 E-value=5.1 Score=36.88 Aligned_cols=186 Identities=16% Similarity=0.190 Sum_probs=111.0
Q ss_pred chhHHHHHHHHHHhhccchhhhHhhh-hhchHHHHHH-------hcCCC--CHHHHHHHHHH---HHHHhhccccccchh
Q 009514 202 PRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVD-------ALAHD--SSDVRSAACMC---LRSVSRSIKNLSAGS 268 (533)
Q Consensus 202 ~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~l~~-------~L~~~--~~~v~~~a~~~---L~~ls~~~~~~~~~~ 268 (533)
++.|+.|+..|+.--..-++..-.+. ..|.+..+++ .+..+ +...-...|.+ +..++.+ +..+..
T Consensus 9 ~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~- 86 (262)
T PF04078_consen 9 PETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMP- 86 (262)
T ss_dssp HHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH-
T ss_pred cchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHH-
Confidence 56678777666654333333333333 3355555444 22332 12222333333 4445665 667766
Q ss_pred hhhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcC-CchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009514 269 FMNETIVIPLVRLLDDT-----STAVQVAALGAISNIVVD-FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 342 (533)
Q Consensus 269 ~~~~~~i~~Lv~lL~~~-----~~~v~~~a~~aL~nl~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l 342 (533)
|.++.+.-.|..+|+.. .+.+|....+.++.++.. .++....+.+.+.+|..++.++.+++-.|..|...+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 88888888888888633 357899999999999873 345667788899999999999998888899999999888
Q ss_pred hccCCh-------HhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514 343 IFLAED-------KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 389 (533)
Q Consensus 343 ~~~~~~-------~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~ 389 (533)
..+... ..|..-+....-..+..+..++++.+....+++...++++.
T Consensus 167 L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 167 LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 653210 01111111111122333456777888888888888877664
No 196
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.90 E-value=5.1 Score=39.61 Aligned_cols=273 Identities=18% Similarity=0.156 Sum_probs=136.8
Q ss_pred chHHHHhhhc-CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHH-HHHhcCChhhhh
Q 009514 18 NMEFLLSLLN-NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESI-ATIFKNNPEVVS 93 (533)
Q Consensus 18 ~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL-~~l~~~~~~~~~ 93 (533)
-+..++.=++ +...++|..++--|+.-|.+++.+..+...|..+.+...+.+ ++.....+.-++ ..++.+....
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~-- 99 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNM-- 99 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcch--
Confidence 4566777676 345788888888999888899999999999999999999965 332333333333 3334433222
Q ss_pred hhccccCcccHHHHHHHHhcC-ChhhHHHHH-HHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC------C--CC--chh
Q 009514 94 QFVGPDTGRTLSCIIEIVKDR-FARTRLLAS-LCLIVIRNASPCYLQDVGIKTKLINNLLELLD------D--PG--RVG 161 (533)
Q Consensus 94 ~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~-~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~------~--~~--~~~ 161 (533)
.+. .....+.-++++++-. ...+..... .--.++.+ .....+..+.+.+. + +. .-+
T Consensus 100 ~l~--~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk----------~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~ 167 (361)
T PF07814_consen 100 HLL--LDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK----------VQQKSRSLCKELLSSGSSWKSPKPPELSPQ 167 (361)
T ss_pred hhh--hchhHHHHHHHHhccccccccccchhhhhhhhhhH----------HHHHHHHHHHHHHhccccccccCCcccccc
Confidence 110 0122333335555510 000000000 00000000 01112221222221 0 11 112
Q ss_pred hhHHHHHHhhh--------------cCCHHHHHHHHHcCcHHHHHHhhhc----CC-----CC-----chhHHHHHHHHH
Q 009514 162 DEASFAFSSLI--------------AEKEDMQKLAFEVNGVDKLYNHLQK----GS-----LH-----PRRFEGILLALA 213 (533)
Q Consensus 162 ~~a~~~L~~l~--------------~~~~~~~~~~~~~~~l~~L~~~L~~----~~-----~~-----~~~~~~a~~aL~ 213 (533)
.-+..++..+. ...+.+++...+.|++..+++.+.+ .. .. ....+.++++|-
T Consensus 168 ~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILE 247 (361)
T PF07814_consen 168 TLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILE 247 (361)
T ss_pred cHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHH
Confidence 33333333331 1112234445667889999988763 11 00 113455677777
Q ss_pred HhhccchhhhHhhhhh--chHHHHH----HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHh------
Q 009514 214 DMCSKLECCRSRCLSL--QVLKLVV----DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL------ 281 (533)
Q Consensus 214 ~l~~~~~~~~~~~~~~--~~l~~l~----~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l------ 281 (533)
+.+..++.++...... +.++.+. .......+.....+++.+.|++.+.+..+.. +...++...+..+
T Consensus 248 s~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~-~~s~~l~~~~~~i~~~~~~ 326 (361)
T PF07814_consen 248 SVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEE-FASPKLGQQLGLIVTSFFC 326 (361)
T ss_pred HHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHh-hhhhHhccchHHHHHhhcc
Confidence 7766656555555433 2232222 2222334555788899999999887666555 4443332222111
Q ss_pred -hc-------CCCHHHHHHHHHHHHHHhcCCc
Q 009514 282 -LD-------DTSTAVQVAALGAISNIVVDFT 305 (533)
Q Consensus 282 -L~-------~~~~~v~~~a~~aL~nl~~~~~ 305 (533)
++ +..-+...-+.+++.|++..+.
T Consensus 327 ~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~ 358 (361)
T PF07814_consen 327 VLSLPNYVPEESSFDILILALGLLINLVEHSE 358 (361)
T ss_pred cccccccccccccchHHHHHHHhHHHheeeCc
Confidence 11 1123667778888888876543
No 197
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.75 E-value=0.65 Score=46.67 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=113.1
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC----HHHHHHHHHHHHHHhcCCch
Q 009514 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS----TAVQVAALGAISNIVVDFTT 306 (533)
Q Consensus 231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~----~~v~~~a~~aL~nl~~~~~~ 306 (533)
....+.+.+.++++.-+..+.+-|..++.... .-.. |+...++..|.++..+++ .++...++.++..+.....
T Consensus 84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~-fa~e-fi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv- 160 (713)
T KOG2999|consen 84 YAKRIMEILTEGNNISKMEALKELDSLSLDPT-FAEE-FIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV- 160 (713)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhhccccHH-HHHH-HHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence 35567788888888888888888988887633 2333 688889999999998653 4777778888877664221
Q ss_pred hHHHHHHhCcHHHHHHhhcC--CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHH
Q 009514 307 RRSTFIRLGGVKLLVQLSKS--MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRN 384 (533)
Q Consensus 307 ~~~~~~~~~~i~~L~~ll~~--~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~ 384 (533)
..........+.....+.+- .+..+-..|+..|-++..++ +..++.+.++-.++.+++.+...+..++..|+..+..
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s-~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGS-DTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA 239 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCC-hHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 11122223344444444432 34557778888888888754 4578888889999999999999999999999999988
Q ss_pred hhcCCcc
Q 009514 385 LVDGRIN 391 (533)
Q Consensus 385 l~~~~~~ 391 (533)
+....++
T Consensus 240 l~~~a~~ 246 (713)
T KOG2999|consen 240 LFRKAPD 246 (713)
T ss_pred HHhhCCh
Confidence 8866554
No 198
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.72 E-value=2.5 Score=38.83 Aligned_cols=147 Identities=12% Similarity=0.156 Sum_probs=93.3
Q ss_pred HHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC-----HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhh
Q 009514 292 AALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD-----STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL 366 (533)
Q Consensus 292 ~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l 366 (533)
.|...+.-++. .++.+..+++++..--|..+++..+ +.+|..+++.++.+....+++.-..++....++.-++.
T Consensus 69 naLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~ 147 (262)
T PF04078_consen 69 NALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI 147 (262)
T ss_dssp HHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence 34444445565 5566778888887666667766432 56899999999999987777777788888889999999
Q ss_pred hCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc------CchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHH
Q 009514 367 ICDPEPSVQEQALALVRNLVDGRINSVEYIFAED------GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEA 440 (533)
Q Consensus 367 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~------~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 440 (533)
++.++.--+.-|..++..+..++. ..+++.... ..++..++..+...+++..-++.+++-..++.. +..++.
T Consensus 148 me~GselSKtvAtfIlqKIL~dd~-GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn-prar~a 225 (262)
T PF04078_consen 148 MEFGSELSKTVATFILQKILLDDV-GLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN-PRAREA 225 (262)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHSHH-HHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS-TTHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHcchh-HHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC-HHHHHH
Confidence 998888888888888887776532 122221110 014444444444446777778888888777754 333443
Q ss_pred H
Q 009514 441 V 441 (533)
Q Consensus 441 ~ 441 (533)
+
T Consensus 226 L 226 (262)
T PF04078_consen 226 L 226 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 199
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=93.71 E-value=2.4 Score=45.58 Aligned_cols=194 Identities=16% Similarity=0.183 Sum_probs=104.6
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC----CCHHHHHHHHHHHHHHhhcccc
Q 009514 188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH----DSSDVRSAACMCLRSVSRSIKN 263 (533)
Q Consensus 188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~----~~~~v~~~a~~~L~~ls~~~~~ 263 (533)
+..+.+++.+...+. ..+...|..+....... ....+..+.++++. .++.++..|.-+++.+.+..-.
T Consensus 397 v~~i~~~I~~~~~~~---~ea~~~l~~l~~~~~~P-----t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 397 VKFIKDLIKSKKLTD---DEAAQLLASLPFHVRRP-----TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHTT-S-H---HHHHHHHHHHHHT----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCH---HHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 455666666643222 23444444443321010 12345556666654 3567888888888887543111
Q ss_pred c---------cchhhhhcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC---
Q 009514 264 L---------SAGSFMNETIVIPLVRLLD----DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--- 327 (533)
Q Consensus 264 ~---------~~~~~~~~~~i~~Lv~lL~----~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--- 327 (533)
. +.. .....+++.+...+. ..+.+-+..++.||+|+-. + ..++.+..++...
T Consensus 469 ~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 469 NSDSAEFCDPCSR-CIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--P---------ESIPVLLPYIEGKEEV 536 (618)
T ss_dssp T-----------S-S--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S
T ss_pred cccccccccccch-hhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--c---------hhhHHHHhHhhhcccc
Confidence 1 111 234456677776664 5677889999999999963 1 3577777777765
Q ss_pred CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC--CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHH
Q 009514 328 DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILD 405 (533)
Q Consensus 328 ~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~ 405 (533)
+..+|..|+++|..+....+. ...+.++++.. ..+.++|..|..+|... +|.. ..+.
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~---------~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~---------~~l~ 595 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPE---------KVREILLPIFMNTTEDPEVRIAAYLILMRC---NPSP---------SVLQ 595 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HH---------HHHHHHHHHHH-TTS-HHHHHHHHHHHHHT------H---------HHHH
T ss_pred chHHHHHHHHHHHHHhhcCcH---------HHHHHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH---------HHHH
Confidence 578999999999988553321 22345555554 34677888887555442 2210 0455
Q ss_pred HHHHHhccCCchhHHHH
Q 009514 406 AVGRQLRIASKAEIEIQ 422 (533)
Q Consensus 406 ~L~~~L~~~~~~~v~~~ 422 (533)
.+...+...++.+|...
T Consensus 596 ~i~~~l~~E~~~QV~sf 612 (618)
T PF01347_consen 596 RIAQSLWNEPSNQVASF 612 (618)
T ss_dssp HHHHHHTT-S-HHHHHH
T ss_pred HHHHHHhhCchHHHHHH
Confidence 55566665455555443
No 200
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.70 E-value=0.66 Score=42.74 Aligned_cols=97 Identities=24% Similarity=0.277 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh
Q 009514 246 VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS 324 (533)
Q Consensus 246 v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll 324 (533)
....|...|.-++--++..+.. +.+...++.++.+|+ ..++.++.++..+|..+..+.+.+...+-+.+|+..++.++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~l-F~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKL-FHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHH-HhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 3445667777666655555555 778899999999995 56899999999999998888888888888899999999999
Q ss_pred cCC--CHHHHHHHHHHHHHhh
Q 009514 325 KSM--DSTIRLNALRALRNLI 343 (533)
Q Consensus 325 ~~~--~~~~~~~al~aL~~l~ 343 (533)
++. +.++|...+..|.-..
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred ccccccHHHhHHHHHHHHHHH
Confidence 875 4677777777776443
No 201
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=93.50 E-value=4.9 Score=39.97 Aligned_cols=173 Identities=19% Similarity=0.205 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHH-hcCChhhhhhhccccCcccHHHHHHHHhc-CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHH
Q 009514 72 IQRDASLESIATI-FKNNPEVVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINN 149 (533)
Q Consensus 72 ~v~~~al~aL~~l-~~~~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~ 149 (533)
+-+..|+.-|-.| |++.-.+|.+.. +..+..+++.+.+ .+...+..|.+.|..++...+.+..+ -.+-++..
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f----~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~D--stE~ai~K 375 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHF----AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFD--STEIAICK 375 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHH----HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhc--hHHHHHHH
Confidence 4566676656555 444444554332 4567778888876 78889999999999999876532221 12334555
Q ss_pred HHHhcCCC-CchhhhHH-HHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhh
Q 009514 150 LLELLDDP-GRVGDEAS-FAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL 227 (533)
Q Consensus 150 L~~ll~~~-~~~~~~a~-~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~ 227 (533)
+++.-.+. +.+...|. .++..++...+.. .+..+..++... +...-..++..+..+...-+.-.-.-.
T Consensus 376 ~Leaa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~--D~~~~~~~iKm~Tkl~e~l~~EeL~~l 445 (516)
T KOG2956|consen 376 VLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTA--DEPRAVAVIKMLTKLFERLSAEELLNL 445 (516)
T ss_pred HHHHHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcC--cchHHHHHHHHHHHHHhhcCHHHHHHh
Confidence 55544443 34444444 4445555555542 233445545443 244556666667776643211111112
Q ss_pred hhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 009514 228 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRS 260 (533)
Q Consensus 228 ~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~ 260 (533)
-..+.|.+++.-++.+..||..++.||..+...
T Consensus 446 l~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 446 LPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred hhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 246889999999999999999999999887543
No 202
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=93.36 E-value=8.5 Score=39.14 Aligned_cols=160 Identities=14% Similarity=0.168 Sum_probs=108.1
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCH----HHHHHHHHHHHHHhhcccccc
Q 009514 190 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS----DVRSAACMCLRSVSRSIKNLS 265 (533)
Q Consensus 190 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~----~v~~~a~~~L~~ls~~~~~~~ 265 (533)
.+.+.+.+++ ...+..++..+..++.+ ...-..+....++..|.+++.++.. .+......++..+-.. ....
T Consensus 87 ~i~e~l~~~~--~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmeh-gvvs 162 (713)
T KOG2999|consen 87 RIMEILTEGN--NISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEH-GVVS 162 (713)
T ss_pred HHHHHHhCCC--cHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh-ceee
Confidence 4566666664 33444578888888764 4666778888999999999987654 4444444444444222 1122
Q ss_pred chhhhhcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514 266 AGSFMNETIVIPLVRLLD--DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 343 (533)
Q Consensus 266 ~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~ 343 (533)
+. .....++.....+.+ ..+..+-..|+..|-++..+.......+.+.--+..|++.++..+..+...|+..+..+.
T Consensus 163 W~-~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~ 241 (713)
T KOG2999|consen 163 WE-SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF 241 (713)
T ss_pred ee-ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 22 223334444444443 346678889999998888877767778888889999999999999999999998888888
Q ss_pred ccCChHhHHHH
Q 009514 344 FLAEDKCKEEI 354 (533)
Q Consensus 344 ~~~~~~~~~~i 354 (533)
...+++-|..+
T Consensus 242 ~~a~~~~R~~~ 252 (713)
T KOG2999|consen 242 RKAPDDKRFEM 252 (713)
T ss_pred hhCChHHHHHH
Confidence 77666544433
No 203
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=93.27 E-value=0.96 Score=41.72 Aligned_cols=98 Identities=16% Similarity=0.092 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhh
Q 009514 119 RLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQ 196 (533)
Q Consensus 119 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~ 196 (533)
...|...|.-++-.++. .+..+.+...+..++++++ .++.++..+..+|..+.-+++.+.+.+-+.+|+..++.+++
T Consensus 108 i~~aL~vLQGl~LLHp~-Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPP-SRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHcCch-HHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 44566777777666653 4666778899999999996 35678888888888888899999898888999999999999
Q ss_pred cCCCCchhHHHHHHHHHHhhc
Q 009514 197 KGSLHPRRFEGILLALADMCS 217 (533)
Q Consensus 197 ~~~~~~~~~~~a~~aL~~l~~ 217 (533)
+.+.+.+++..++..|.-...
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred cccccHHHhHHHHHHHHHHHc
Confidence 887667777777776665443
No 204
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=13 Score=39.37 Aligned_cols=280 Identities=13% Similarity=0.108 Sum_probs=150.1
Q ss_pred CcHHHHHHhhhcCC------CCchhHHHHHHHHHHhhc--cchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 009514 186 NGVDKLYNHLQKGS------LHPRRFEGILLALADMCS--KLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSV 257 (533)
Q Consensus 186 ~~l~~L~~~L~~~~------~~~~~~~~a~~aL~~l~~--~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~l 257 (533)
|.++-+.+.|.+.. .++...+.|++.++++.. .....-..+.+.=++++++..++++..-++..||..+..+
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence 55677777774431 124456888888888765 2222233455556788888899999999999999999988
Q ss_pred hhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHh--CcHHHHHHhhcCCCHHHHHHH
Q 009514 258 SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL--GGVKLLVQLSKSMDSTIRLNA 335 (533)
Q Consensus 258 s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~--~~i~~L~~ll~~~~~~~~~~a 335 (533)
+...+.. -......+.....+++.+-.|+..|+-|+.-+..+. .....+.++ +.++.|+.+.+.-+.+.....
T Consensus 488 eeDfkd~----~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~-q~h~k~sahVp~tmekLLsLSn~feiD~LS~v 562 (970)
T COG5656 488 EEDFKDN----GILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE-QSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV 562 (970)
T ss_pred HHhcccc----hHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch-hhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Confidence 6543221 123344556667778888899999999998887654 222222221 334444454444333333333
Q ss_pred HHHH-HHhhccCCh---HhHHHHHHhhcHHHHHhhhCCC------ChhHHHHHHHHHHHhhcC--CcchHHHHHhhcCc-
Q 009514 336 LRAL-RNLIFLAED---KCKEEIFMELTASLLASLICDP------EPSVQEQALALVRNLVDG--RINSVEYIFAEDGI- 402 (533)
Q Consensus 336 l~aL-~~l~~~~~~---~~~~~i~~~~~~~~l~~lL~~~------~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~~~~- 402 (533)
...+ ......-+| +....+.+. .+.....++..+ ..+=+..|.+.|+.+... +-++.-.++++.-.
T Consensus 563 Me~fVe~fseELspfa~eLa~~Lv~q-Flkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~s 641 (970)
T COG5656 563 MESFVEYFSEELSPFAPELAGSLVRQ-FLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVS 641 (970)
T ss_pred HHHHHHHhHHhhchhHHHHHHHHHHH-HHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 3222 222211111 111111111 122223333322 135566777777766422 00111112221100
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh-hHHHHHHHHHHhhcC
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS-RLRTAAVWAVLNLTC 481 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~-~v~~~a~~~L~~l~~ 481 (533)
..+.+.-.|.+ .....-.+|+-.+-+.+-... ....++ -|+...+.+++.++.. ..-+++.-++.|+..
T Consensus 642 lypvi~Filkn-~i~dfy~Ea~dildg~tf~sk-eI~pim--------wgi~Ell~~~l~~~~t~~y~ee~~~al~nfit 711 (970)
T COG5656 642 LYPVISFILKN-EISDFYQEALDILDGYTFMSK-EIEPIM--------WGIFELLLNLLIDEITAVYSEEVADALDNFIT 711 (970)
T ss_pred HHHHHHHHHhh-hHHHHHHHHHHHHhhhhHHHH-Hhhhhh--------hHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 22222222333 555677778888776654322 122332 2566666677776663 667788888888875
No 205
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=93.23 E-value=15 Score=40.12 Aligned_cols=181 Identities=14% Similarity=0.156 Sum_probs=105.4
Q ss_pred cccchHHHHhhhcCCC-----cchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhc----C-C----hHHHHHHHHH
Q 009514 15 QEENMEFLLSLLNNES-----ENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG----G-S----LIQRDASLES 80 (533)
Q Consensus 15 ~~~~i~~L~~lL~~~~-----~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~----~-~----~~v~~~al~a 80 (533)
+.||+..|++++.+-. ...-....++|..+|+.+.+|..+.+.|+++.|++.|. . . ..+-+.-+..
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 6789999999999633 34555688899999999999999999999999999885 1 2 3455555555
Q ss_pred HHHHhcCChh-hhhhh---cccc-----CcccHHHHHHHHhcC----ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhH
Q 009514 81 IATIFKNNPE-VVSQF---VGPD-----TGRTLSCIIEIVKDR----FARTRLLASLCLIVIRNASPCYLQDVGIKTKLI 147 (533)
Q Consensus 81 L~~l~~~~~~-~~~~~---~~~~-----~~~~i~~l~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i 147 (533)
+..+..+... ..... .... ...-+..+++.+.++ ++.+....++.|-.+...+.. .+..+-..+-
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e--~m~~Lv~~F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEE--KMDALVEHFK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHH--HHHHHHHHHH
Confidence 5544322111 11100 0010 122356666666543 466777778888888776532 2222222222
Q ss_pred HHHHHhcC-CCC--chhhhHHHHHHhhhc----CC--HHHHHHHHHcCcHHHHHHhhhcC
Q 009514 148 NNLLELLD-DPG--RVGDEASFAFSSLIA----EK--EDMQKLAFEVNGVDKLYNHLQKG 198 (533)
Q Consensus 148 ~~L~~ll~-~~~--~~~~~a~~~L~~l~~----~~--~~~~~~~~~~~~l~~L~~~L~~~ 198 (533)
|.+ ++=. +.. .-...-..++..++. +. ..++..+++.|.+...+++|...
T Consensus 273 p~l-~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~ 331 (802)
T PF13764_consen 273 PYL-DFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH 331 (802)
T ss_pred Hhc-ChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh
Confidence 222 2111 111 000111333333332 22 35677788999999999988775
No 206
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.13 E-value=1.9 Score=37.76 Aligned_cols=143 Identities=18% Similarity=0.255 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhhccCChHhHH----HHH------Hhhc-HHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhh
Q 009514 331 IRLNALRALRNLIFLAEDKCKE----EIF------MELT-ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE 399 (533)
Q Consensus 331 ~~~~al~aL~~l~~~~~~~~~~----~i~------~~~~-~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 399 (533)
+|..|+.+|..++...++..-- .++ .... ...+.-++.|+++++|..|+.++..+.++......+.-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 5677777777776542221000 000 0112 2334445679999999999999999998853322222111
Q ss_pred cC--------------c---hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHH--HHHHHhhHhhhhhhHHHHHHh
Q 009514 400 DG--------------I---ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE--AVMDQLLLRAENKAQSCIIKF 460 (533)
Q Consensus 400 ~~--------------~---~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~lv~~ 460 (533)
.+ + +-..|...|+...+..+..+.+.++..+....+.++- .++ ..++..+..+
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll--------~~~v~~v~~~ 153 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLL--------TEVVTQVRPL 153 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHH--------HHHHHHHHHH
Confidence 11 0 2344555566656677888888999888887764332 122 3455666667
Q ss_pred hccCChhHHHHHHHHHHhhcC
Q 009514 461 LQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 461 L~~~~~~v~~~a~~~L~~l~~ 481 (533)
+.+.|.+++..+..++..+..
T Consensus 154 l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 154 LRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HhcCCCcHHHHHHHHHHHHHc
Confidence 788999999999999988874
No 207
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.08 E-value=2.8 Score=45.59 Aligned_cols=176 Identities=15% Similarity=0.129 Sum_probs=117.1
Q ss_pred CchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHh-cCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHH
Q 009514 201 HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDA-LAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLV 279 (533)
Q Consensus 201 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~-L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv 279 (533)
.|.-|..|+..+.....+.. ........+.+-.+++. +.+.|-.+...++.+|..++......... ...+..+.++
T Consensus 266 ~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~--~~~~v~p~ll 342 (815)
T KOG1820|consen 266 KWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK--YAKNVFPSLL 342 (815)
T ss_pred chHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH--HHHhhcchHH
Confidence 46677778877777665432 11111223444444444 45778899999999999988653333222 4457788899
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhc
Q 009514 280 RLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELT 359 (533)
Q Consensus 280 ~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~ 359 (533)
.-+.+....++..+..++-.....+.. ....+.+...+++.++..+......+.......++.+-..---...
T Consensus 343 d~lkekk~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l 415 (815)
T KOG1820|consen 343 DRLKEKKSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTL 415 (815)
T ss_pred HHhhhccHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHH
Confidence 988888888888888777655532211 2356777888999999999988877777665443211111112235
Q ss_pred HHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514 360 ASLLASLICDPEPSVQEQALALVRNLV 386 (533)
Q Consensus 360 ~~~l~~lL~~~~~~v~~~a~~~L~~l~ 386 (533)
.+.++....|.+.+||..+..++..+.
T Consensus 416 ~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 416 VPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred hHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 788888889999999999998887665
No 208
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=92.98 E-value=0.53 Score=35.99 Aligned_cols=72 Identities=19% Similarity=0.130 Sum_probs=56.4
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc
Q 009514 317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 391 (533)
Q Consensus 317 i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 391 (533)
....+..++++.+.+|..++..|.++....+ .........+..+...|+++|+-|--+|+..|..++...|+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4556677788889999999999999987554 11222345577788899999999999999999999987664
No 209
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=92.90 E-value=2 Score=38.05 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=82.1
Q ss_pred CCChhHHHHHHHHHHHhhcCCcchHHHHHhhc--------------CchHHHHHHHhcc-----CCchhHHHHHHHHHHH
Q 009514 369 DPEPSVQEQALALVRNLVDGRINSVEYIFAED--------------GIILDAVGRQLRI-----ASKAEIEIQGMYVLGN 429 (533)
Q Consensus 369 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--------------~~~~~~L~~~L~~-----~~~~~v~~~a~~~L~~ 429 (533)
+++...-..++.+|+|++..+. ....+++.. +..+..|+..+.. .....-....+.++.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDS-GCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchH-HHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 4444555667778888887543 233333322 1255556655543 2334556778899999
Q ss_pred hccCChhhHHHHHHHhhHhhhhhh--HHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHH--CCcHHHHHh
Q 009514 430 VATGKESHKEAVMDQLLLRAENKA--QSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHD--AGIVSHVKN 505 (533)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~~~--~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~--~g~~~~L~~ 505 (533)
++.- +..|+.+++. ..+. +..|..++.+.+..=|..++++|-|+++ ....|...+.+ .+++|.|+-
T Consensus 85 lS~~-~~gR~~~l~~-----~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccF----d~~~H~~LL~~~~~~iLp~LLl 154 (192)
T PF04063_consen 85 LSQL-PEGRQFFLDP-----QRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCF----DTDSHEWLLSDDEVDILPYLLL 154 (192)
T ss_pred hcCC-HHHHHHHhCc-----hhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhc----cHhHHHHhcCchhhhhHHHHHh
Confidence 9964 5578877762 2333 6778888888877778899999999998 33344444443 467777776
Q ss_pred hhc
Q 009514 506 MVN 508 (533)
Q Consensus 506 ll~ 508 (533)
-+-
T Consensus 155 PLa 157 (192)
T PF04063_consen 155 PLA 157 (192)
T ss_pred hcc
Confidence 664
No 210
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.78 E-value=5.2 Score=41.76 Aligned_cols=132 Identities=14% Similarity=0.211 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHHH-hhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHH
Q 009514 242 DSSDVRSAACMCLRSV-SRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKL 319 (533)
Q Consensus 242 ~~~~v~~~a~~~L~~l-s~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~ 319 (533)
.++.++.+|.-+|..+ +.+ .+. -...+|.|+..+. +|+|.+|..|+-.++-++..+.... + ..-..
T Consensus 908 sd~~lq~aA~l~L~klMClS-~~f------c~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~----d-e~t~y 975 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLS-FEF------CSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTA----D-EHTHY 975 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHh-HHH------HHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhh----H-HHHHH
Confidence 6889999998888766 433 222 2356888999886 8999999999999988876554322 1 23456
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc
Q 009514 320 LVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 391 (533)
Q Consensus 320 L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 391 (533)
|.+-+.+.+..+|+.++.++..+..... +--.|-.+.+..+|.++|..+...|=..+..++..+..
T Consensus 976 LyrrL~De~~~V~rtclmti~fLilagq------~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdNt 1041 (1128)
T COG5098 976 LYRRLGDEDADVRRTCLMTIHFLILAGQ------LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDNT 1041 (1128)
T ss_pred HHHHhcchhhHHHHHHHHHHHHHHHccc------eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcccc
Confidence 6777888899999999999999865322 12235567888999999999998888888888766543
No 211
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.66 E-value=0.69 Score=43.21 Aligned_cols=140 Identities=19% Similarity=0.209 Sum_probs=94.2
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 009514 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST 310 (533)
Q Consensus 231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 310 (533)
.+...+..|.+.+|.....+...++.|+.-++..... .-..++..+++-+++....|-..|+.++.-+...... .
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~--~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~---~ 163 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNP--MLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN---S 163 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHH--HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH---H
Confidence 4666677888889988888888888887654432222 2234566677777888889999999999888754433 2
Q ss_pred HHHhCcHHHH-HHhhcC---CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHh
Q 009514 311 FIRLGGVKLL-VQLSKS---MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 385 (533)
Q Consensus 311 ~~~~~~i~~L-~~ll~~---~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l 385 (533)
+.+ .+..+ ..+++. ++.-+++.|-.+|..++.+..| ...++.|...+.+.++.++..++....+.
T Consensus 164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp--------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP--------QKLLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh--------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence 222 23333 344443 3456899999999999987765 22355666677788888887776444433
No 212
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=92.56 E-value=0.94 Score=32.78 Aligned_cols=66 Identities=14% Similarity=0.233 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCC
Q 009514 420 EIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG 498 (533)
Q Consensus 420 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g 498 (533)
.+.++|+++++++... --.+++ +.++++.++++.. ++...+|-.|.++|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss~~--G~~lL~------~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-----T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPL--GIQLLD------ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-----TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChH--HHHHHh------hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-----CHHHHHHHHHcC
Confidence 4679999999987432 333444 3789999999987 4567999999999999984 556666666655
No 213
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.16 E-value=5.7 Score=41.57 Aligned_cols=196 Identities=11% Similarity=0.076 Sum_probs=109.8
Q ss_pred HHhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhccC-ChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC-
Q 009514 312 IRLGGVKLLVQ-LSKSMDSTIRLNALRALRNLIFLA-EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG- 388 (533)
Q Consensus 312 ~~~~~i~~L~~-ll~~~~~~~~~~al~aL~~l~~~~-~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~- 388 (533)
++.|.+.-++. .++.+...+....-..|+.+.... -...-++++-...-+.+.+-|+-++..||.+|+..+.++.--
T Consensus 126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~ 205 (1005)
T KOG1949|consen 126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR 205 (1005)
T ss_pred HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence 45566666653 344333233322223344332211 000112333334457788888999999999999999988733
Q ss_pred Ccc----hHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-c
Q 009514 389 RIN----SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-S 463 (533)
Q Consensus 389 ~~~----~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~-~ 463 (533)
+|+ ..+.+++.. ...+.++|.+ +-+.|+..|.--++.+.+.. ..++.. ..-.+++..+..-+. +
T Consensus 206 dpd~~~e~mD~i~~kQ---f~~l~~LL~d-~~p~VRS~a~~gv~k~~s~f----We~iP~---~i~~~ll~kI~d~~a~d 274 (1005)
T KOG1949|consen 206 DPDLHAEEMDSIIQKQ---FEELYSLLED-PYPMVRSTAILGVCKITSKF----WEMIPP---TILIDLLKKITDELAFD 274 (1005)
T ss_pred CCCccHHHHHHHHHHH---HHHHHHHhcC-CCchHHHHHHHHHHHHHHHH----HHHcCH---HHHHHHHHHHHHHhhhc
Confidence 222 123333332 4567777877 88999988776666555322 222210 000122233333332 3
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHH
Q 009514 464 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQF 525 (533)
Q Consensus 464 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~ 525 (533)
+..+||......|..+..+ +.+.. +.+. ++|.|-..+.|.++.||..+..-|-.|
T Consensus 275 t~s~VR~svf~gl~~~l~n--p~sh~----~le~-~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 275 TSSDVRCSVFKGLPMILDN--PLSHP----LLEQ-LLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred cchheehhHhcCcHHHHcC--ccchh----HHHH-HHHhcchhhhccchhHHHHHHHHHHHH
Confidence 4568999999999999863 22221 2222 367777788888888888777766655
No 214
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=92.10 E-value=11 Score=35.63 Aligned_cols=204 Identities=14% Similarity=0.170 Sum_probs=129.9
Q ss_pred HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhH----hhh-hhchHHHHHHhcCCCCHHHHHHHHHHH
Q 009514 180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRS----RCL-SLQVLKLVVDALAHDSSDVRSAACMCL 254 (533)
Q Consensus 180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~----~~~-~~~~l~~l~~~L~~~~~~v~~~a~~~L 254 (533)
..+.+.|.++.+++.+.... .+.+..+.....++-...-..|. .+. ....+..+++.-.. .+++-..+-..+
T Consensus 73 qef~~~~~l~~lI~~l~~l~--fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~ml 149 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHLPKLE--FESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNML 149 (342)
T ss_pred HHHHhCCchHHHHHhhhccc--chhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHH
Confidence 45667788888998887753 55566666666666543222222 121 22455555555111 344444444444
Q ss_pred HHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCc----HHHHHHhhcCCCHH
Q 009514 255 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG----VKLLVQLSKSMDST 330 (533)
Q Consensus 255 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~----i~~L~~ll~~~~~~ 330 (533)
+...+. +.+.+- +...........+++.+.-++..-|..+...+..........++..+. .+..-.++++.+--
T Consensus 150 rEcirh-e~Laki-iL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv 227 (342)
T KOG1566|consen 150 RECIRH-EFLAKI-ILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYV 227 (342)
T ss_pred HHHHhh-HHHHHH-HHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccccee
Confidence 444443 344433 566677777888888888888888888888877655443334444332 33355678889988
Q ss_pred HHHHHHHHHHHhhccCChH--hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514 331 IRLNALRALRNLIFLAEDK--CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 331 ~~~~al~aL~~l~~~~~~~--~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~ 388 (533)
++..++.+++.+..+.++. ..+.+.+...+..+..+|+++...+|-.|.....-...+
T Consensus 228 tkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAn 287 (342)
T KOG1566|consen 228 TKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVAN 287 (342)
T ss_pred hHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcC
Confidence 9999999999987655432 334455556678888999999999999998766655543
No 215
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=91.91 E-value=11 Score=35.31 Aligned_cols=213 Identities=13% Similarity=0.082 Sum_probs=121.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC---CCCchhhhHHHHHHhhhcC---CHHHHH
Q 009514 107 IIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD---DPGRVGDEASFAFSSLIAE---KEDMQK 180 (533)
Q Consensus 107 l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~~~~a~~~L~~l~~~---~~~~~~ 180 (533)
+-.-+.++++.+|..|..+|..+...-+. ......-+..|++++. ++...-..+...+..+... ..+...
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~----~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~ 79 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPP----DFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAV 79 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCH----hhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHH
Confidence 33457788999999999999988775432 1233445666666664 2322222334444444422 111111
Q ss_pred HHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhh--hchHHHHHHhcCC-CCHHHHHHHHHHHHHH
Q 009514 181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLS--LQVLKLVVDALAH-DSSDVRSAACMCLRSV 257 (533)
Q Consensus 181 ~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~--~~~l~~l~~~L~~-~~~~v~~~a~~~L~~l 257 (533)
..+..+.+...-+......|..+...+..+..+. +..+.. .+.+..+++.++. .||+-...+.+.+..+
T Consensus 80 -----~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~---~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 80 -----KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH---REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred -----HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh---HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 1112222211111223456778888888776432 222332 3577888888875 4898888888888877
Q ss_pred hhccccccchhhhhcCcHHHHHHhhc-------CC---CH--HHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc
Q 009514 258 SRSIKNLSAGSFMNETIVIPLVRLLD-------DT---ST--AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK 325 (533)
Q Consensus 258 s~~~~~~~~~~~~~~~~i~~Lv~lL~-------~~---~~--~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~ 325 (533)
....+ -....+.+.+.+. .+ |+ -.++.-..+|.+.....+. ...-.+|.|++-+.
T Consensus 152 ~~~~~--------~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~-----fa~~~~p~LleKL~ 218 (262)
T PF14500_consen 152 LQEFD--------ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL-----FAPFAFPLLLEKLD 218 (262)
T ss_pred HHhcc--------cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh-----hHHHHHHHHHHHHc
Confidence 65522 1345555666552 11 22 2233333444433322222 22356889999999
Q ss_pred CCCHHHHHHHHHHHHHhhc
Q 009514 326 SMDSTIRLNALRALRNLIF 344 (533)
Q Consensus 326 ~~~~~~~~~al~aL~~l~~ 344 (533)
++.+.+|..++.+|...+.
T Consensus 219 s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 219 STSPSVKLDSLQTLKACIE 237 (262)
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 216
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.88 E-value=1.7 Score=33.16 Aligned_cols=71 Identities=25% Similarity=0.318 Sum_probs=53.4
Q ss_pred HHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCCh
Q 009514 360 ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 435 (533)
Q Consensus 360 ~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~ 435 (533)
++..+..+.|+.+.+|..++..|+.+.......+..+ .. ++..+...|.+ +++-|.-+|+..+..++...+
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~--~~--il~l~l~~L~d-~DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDI--PK--ILDLFLSQLKD-EDSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhH--HH--HHHHHHHHcCC-CCchHHHHHHHHHHHHHHHCh
Confidence 4455667788999999999999999997754111111 11 67777788888 899999999999999986554
No 217
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.88 E-value=8.7 Score=41.36 Aligned_cols=345 Identities=15% Similarity=0.092 Sum_probs=157.5
Q ss_pred hhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHH----
Q 009514 33 VSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCII---- 108 (533)
Q Consensus 33 v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~---- 108 (533)
..-.+.+.|+.++-....-..+++.||+..|+.+=..+... .-.-.||.++.+..... +++.-. .-..|..++
T Consensus 369 l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~s~~~-~g~s~cly~~~~~q~~m-ervc~~-p~~v~~~vv~~~~ 445 (1516)
T KOG1832|consen 369 LLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRVSETF-YGLSSCLYTIGSLQGIM-ERVCAL-PLVVIHQVVKLAI 445 (1516)
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCchhhh-hhHHHHHHHHhhhhhHH-HHHhhc-cHHHHHHHHHHHH
Confidence 34456677777665666667788899888777665433211 11123444444332222 222110 012333333
Q ss_pred HHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-------C-----Cchhh--------hHHHHH
Q 009514 109 EIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-------P-----GRVGD--------EASFAF 168 (533)
Q Consensus 109 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-------~-----~~~~~--------~a~~~L 168 (533)
.++.-....-+.+++.++.-..... ...+.+-.+..+..|+.++++ + ++.+. ..+.+|
T Consensus 446 ~l~~cs~~~~~~~~~~ff~~~f~fr--ail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~al 523 (1516)
T KOG1832|consen 446 ELLDCSQDQARKNSALFFAAAFVFR--AILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFAL 523 (1516)
T ss_pred HHHhcchhhccchHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHH
Confidence 3554333333444443333211110 123444456778888887751 1 11111 122222
Q ss_pred Hhhh-----cCCHHHHHHHHHcCcHHHHHHhhhcCCCCch----hHHHHHHHHHHhhccchhh-------hHhhhhhchH
Q 009514 169 SSLI-----AEKEDMQKLAFEVNGVDKLYNHLQKGSLHPR----RFEGILLALADMCSKLECC-------RSRCLSLQVL 232 (533)
Q Consensus 169 ~~l~-----~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~----~~~~a~~aL~~l~~~~~~~-------~~~~~~~~~l 232 (533)
..-. -..+..++.-...++.+..+.-+.....+.. ..+..++-+-.+-...+.. ...+.+.+++
T Consensus 524 R~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v 603 (1516)
T KOG1832|consen 524 RQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGV 603 (1516)
T ss_pred HHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHH
Confidence 2111 1111112222223344444433333322222 2233344333333222211 1235566788
Q ss_pred HHHHHhcCCC-C-------HHHHHHHHHHHHHHhhccccccchhhh--------hcCcHHHHHHhhc----CCCHHHHHH
Q 009514 233 KLVVDALAHD-S-------SDVRSAACMCLRSVSRSIKNLSAGSFM--------NETIVIPLVRLLD----DTSTAVQVA 292 (533)
Q Consensus 233 ~~l~~~L~~~-~-------~~v~~~a~~~L~~ls~~~~~~~~~~~~--------~~~~i~~Lv~lL~----~~~~~v~~~ 292 (533)
..++++..-+ + .+....|...|+.+..- +..+.. +. ...++..+++.-. ..|++++..
T Consensus 604 ~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~-La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~ 681 (1516)
T KOG1832|consen 604 VTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKA-LAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQP 681 (1516)
T ss_pred HHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHH-HHHHHhhcccccCceEEEeecccccccccCHHHHHH
Confidence 8888877521 2 24455566666554332 222222 11 1123333433322 238999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHh-C---cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC
Q 009514 293 ALGAISNIVVDFTTRRSTFIRL-G---GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC 368 (533)
Q Consensus 293 a~~aL~nl~~~~~~~~~~~~~~-~---~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~ 368 (533)
|+.+|.|+...++.++...+.. | +-+.. .+=..+.....++.+.-.. ..+....|+..|++||+
T Consensus 682 AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~-~l~~~~ks~~le~~l~~mw-----------~~Vr~ndGIkiLl~Ll~ 749 (1516)
T KOG1832|consen 682 ALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI-FLGAGTKSAKLEQVLRQMW-----------EAVRGNDGIKILLKLLQ 749 (1516)
T ss_pred HHhhhheeecCCCCcchhhhhhccccCCCccc-cccCCCchHHHHHHHHHHH-----------HHHhcCccHHHHHHHHh
Confidence 9999999998776655443321 0 00000 0000111122222222222 23334457899999987
Q ss_pred CCC-----hhHHHHHHHHHHHhhcCCcchHHHHHh
Q 009514 369 DPE-----PSVQEQALALVRNLVDGRINSVEYIFA 398 (533)
Q Consensus 369 ~~~-----~~v~~~a~~~L~~l~~~~~~~~~~i~~ 398 (533)
-.. ..++.-|+.+|.-|+..+ .+.+++.
T Consensus 750 ~k~P~t~aD~IRalAc~~L~GLaR~~--tVrQIlt 782 (1516)
T KOG1832|consen 750 YKNPPTTADCIRALACRVLLGLARDD--TVRQILT 782 (1516)
T ss_pred ccCCCCcHHHHHHHHHHHHhccccCc--HHHHHHH
Confidence 433 468888999998888764 3444443
No 218
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.78 E-value=5.5 Score=40.78 Aligned_cols=101 Identities=16% Similarity=0.172 Sum_probs=70.5
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh-Hh
Q 009514 272 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED-KC 350 (533)
Q Consensus 272 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~-~~ 350 (533)
.|++..++..+.+++..|+..++..|+-+.....+..+.+. .|.+..|.+-+.+..+.+|..|+.+|+.+-....+ ++
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~-N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLA-NGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 35566677777889999999999999999876655444333 57778888777778889999999999987543221 11
Q ss_pred HHHHHHhhcHHHHHhhh-CCCChhHHHHHHH
Q 009514 351 KEEIFMELTASLLASLI-CDPEPSVQEQALA 380 (533)
Q Consensus 351 ~~~i~~~~~~~~l~~lL-~~~~~~v~~~a~~ 380 (533)
+ ....++.++ .+++.+|+..|+.
T Consensus 169 ~-------~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 169 R-------IVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred H-------HHHHHHHHHhcCcHHHHHHHHHH
Confidence 1 122344444 3778888887753
No 219
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.74 E-value=8.9 Score=40.78 Aligned_cols=159 Identities=21% Similarity=0.253 Sum_probs=92.9
Q ss_pred hHHHHHHhcCCC----CHHHHHHHHHHHHHHhhc-cccccch-hhhhcCcHHHHHHhhc----CCCHHHHHHHHHHHHHH
Q 009514 231 VLKLVVDALAHD----SSDVRSAACMCLRSVSRS-IKNLSAG-SFMNETIVIPLVRLLD----DTSTAVQVAALGAISNI 300 (533)
Q Consensus 231 ~l~~l~~~L~~~----~~~v~~~a~~~L~~ls~~-~~~~~~~-~~~~~~~i~~Lv~lL~----~~~~~v~~~a~~aL~nl 300 (533)
.+..+.++++++ ++.++..+.-+++++.+. +.+.... ......+++.+.+.|. ..+.+-+...+.+|+|+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 466677777643 456788888888877652 1111100 0122456677766663 35666788899999998
Q ss_pred hcCCchhHHHHHHhCcHHHHHHhhc---CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC--CCChhHH
Q 009514 301 VVDFTTRRSTFIRLGGVKLLVQLSK---SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQ 375 (533)
Q Consensus 301 ~~~~~~~~~~~~~~~~i~~L~~ll~---~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~--~~~~~v~ 375 (533)
... ..++.+..++. ..+..+|..|+++|..++...+.. ..+.++++.. ..++++|
T Consensus 474 g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~---------v~~~l~~i~~n~~e~~EvR 533 (574)
T smart00638 474 GHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK---------VQEVLLPIYLNRAEPPEVR 533 (574)
T ss_pred CCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH---------HHHHHHHHHcCCCCChHHH
Confidence 742 22344444444 235679999999999887543322 2344555554 4567888
Q ss_pred HHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHH
Q 009514 376 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEI 421 (533)
Q Consensus 376 ~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~ 421 (533)
..|+.+|... +|... .+..+...+...++.+|..
T Consensus 534 iaA~~~lm~t---~P~~~---------~l~~ia~~l~~E~~~QV~s 567 (574)
T smart00638 534 MAAVLVLMET---KPSVA---------LLQRIAELLNKEPNLQVAS 567 (574)
T ss_pred HHHHHHHHhc---CCCHH---------HHHHHHHHHhhcCcHHHHH
Confidence 8887655433 22110 4555656666545555543
No 220
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.74 E-value=1.7 Score=46.76 Aligned_cols=170 Identities=19% Similarity=0.175 Sum_probs=99.5
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCCch
Q 009514 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD----TSTAVQVAALGAISNIVVDFTT 306 (533)
Q Consensus 231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~----~~~~v~~~a~~aL~nl~~~~~~ 306 (533)
.+..+.+++......-. .+...|..+....... ....+..+..+++. .++.++..|.-+++.++.....
T Consensus 396 av~~i~~~I~~~~~~~~-ea~~~l~~l~~~~~~P------t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKLTDD-EAAQLLASLPFHVRRP------TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S-HH-HHHHHHHHHHHT-----------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCHH-HHHHHHHHHHhhcCCC------CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 56667777765432222 2445555554432111 23456667777754 4677888888888888753211
Q ss_pred hH---------HHHHHhCcHHHHHHhhc----CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCC---
Q 009514 307 RR---------STFIRLGGVKLLVQLSK----SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDP--- 370 (533)
Q Consensus 307 ~~---------~~~~~~~~i~~L~~ll~----~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~--- 370 (533)
.. ...+....++.+...+. ..+..-+..++.||+|+-.. ..++.+..++.+.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~------------~~i~~l~~~i~~~~~~ 536 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP------------ESIPVLLPYIEGKEEV 536 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G------------GGHHHHHTTSTTSS-S
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc------------hhhHHHHhHhhhcccc
Confidence 10 11122345555554444 45667788999999999432 2478888888766
Q ss_pred ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-CCchhHHHHHHHHHHH
Q 009514 371 EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-ASKAEIEIQGMYVLGN 429 (533)
Q Consensus 371 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~-~~~~~v~~~a~~~L~~ 429 (533)
+..+|..|+++|+.+....++. +.+.+.+++.+ ..++++|..|..+|..
T Consensus 537 ~~~~R~~Ai~Alr~~~~~~~~~----------v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 537 PHFIRVAAIQALRRLAKHCPEK----------VREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -HHHHHHHHHTTTTGGGT-HHH----------HHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhcCcHH----------HHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 6889999999999987776543 34455555544 2467899999888765
No 221
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=91.74 E-value=4.5 Score=35.37 Aligned_cols=142 Identities=18% Similarity=0.217 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhhccc-ccc---chhh------hhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHh
Q 009514 246 VRSAACMCLRSVSRSIK-NLS---AGSF------MNETIVIPLVR-LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL 314 (533)
Q Consensus 246 v~~~a~~~L~~ls~~~~-~~~---~~~~------~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~ 314 (533)
+|..|..+|..+++..+ ..- +..+ ...+.-+.|+. ++.|+++++|..|+.++..+..+...+-...-+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 67788888888876522 110 0001 12334455655 5579999999999999999987754432111110
Q ss_pred -------------------CcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCChHhH--HHHHHhhcHHHHHhhhCCCCh
Q 009514 315 -------------------GGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDKCK--EEIFMELTASLLASLICDPEP 372 (533)
Q Consensus 315 -------------------~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~~~~~--~~i~~~~~~~~l~~lL~~~~~ 372 (533)
..-..|+..+..+ +..+....+.++..++... |..| ..++.. .+..+..++.+.|.
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~t-PY~rL~~~ll~~-~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQAT-PYHRLPPGLLTE-VVTQVRPLLRHRDP 159 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccC-ChhhcCHhHHHH-HHHHHHHHHhcCCC
Confidence 1223344445443 5667778888888887644 4333 222222 34566667778899
Q ss_pred hHHHHHHHHHHHhhcCC
Q 009514 373 SVQEQALALVRNLVDGR 389 (533)
Q Consensus 373 ~v~~~a~~~L~~l~~~~ 389 (533)
+++..++.++..+....
T Consensus 160 ~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 160 NVRVAALSCLGALLSVQ 176 (182)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99999888888776553
No 222
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.54 E-value=15 Score=36.30 Aligned_cols=149 Identities=18% Similarity=0.108 Sum_probs=82.2
Q ss_pred hHhhhHHHHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHH-HhhhcCCCCchhHHHHHHHHHHhhcc
Q 009514 142 IKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY-NHLQKGSLHPRRFEGILLALADMCSK 218 (533)
Q Consensus 142 ~~~~~i~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~-~~L~~~~~~~~~~~~a~~aL~~l~~~ 218 (533)
.+.+-.+.+-+-++ |...-+..|...+..+++..+..-..++ .+.+..++ ++-.++..++..++.|+..++.++..
T Consensus 207 fEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k 285 (370)
T PF08506_consen 207 FEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASK 285 (370)
T ss_dssp HHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBS
T ss_pred HccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhh
Confidence 33444555555454 2344567777888888754332211111 11122222 12224445688899999999999876
Q ss_pred chhhh------------HhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC
Q 009514 219 LECCR------------SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS 286 (533)
Q Consensus 219 ~~~~~------------~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 286 (533)
....+ ..+....++|-|. -=.+..|-++..|++.+..+....+. . .-.+++|.++..|.+++
T Consensus 286 ~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~---~--~l~~~~~~l~~~L~~~~ 359 (370)
T PF08506_consen 286 GSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK---E--QLLQIFPLLVNHLQSSS 359 (370)
T ss_dssp S--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H---H--HHHHHHHHHHHHTTSS-
T ss_pred hccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH---H--HHHHHHHHHHHHhCCCC
Confidence 53221 1122223334333 11145678899999999888654221 2 33468999999999999
Q ss_pred HHHHHHHHHHH
Q 009514 287 TAVQVAALGAI 297 (533)
Q Consensus 287 ~~v~~~a~~aL 297 (533)
.-|...|+.++
T Consensus 360 ~vv~tyAA~~i 370 (370)
T PF08506_consen 360 YVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred cchhhhhhhhC
Confidence 99999998875
No 223
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=91.49 E-value=9.8 Score=41.53 Aligned_cols=188 Identities=12% Similarity=0.094 Sum_probs=120.4
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHH
Q 009514 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRS 309 (533)
Q Consensus 231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~ 309 (533)
+.+.+..-+.+.+|.-|..|+.-+.....+.. .... -...+.+..+++.. .+.+..+...++.+|..++........
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 44555566678899999888887776654422 1111 12234444455543 477889999999999888875554432
Q ss_pred HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514 310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 389 (533)
Q Consensus 310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~ 389 (533)
... .+..+.+..-+......++...+.++...+.... -....+.+..++.+.++.+++.+...+.......
T Consensus 332 ~~~-~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~--------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 332 KYA-KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP--------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred HHH-HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 222 4678889988888888888887777766654221 1123567788899999999999887776665443
Q ss_pred cc-hHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514 390 IN-SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 390 ~~-~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 432 (533)
+. ....-.- +.+.+.++....+ .+..|+..+..+++-+..
T Consensus 403 ~~~~~~~~t~--~~l~p~~~~~~~D-~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 403 GPKTVEKETV--KTLVPHLIKHIND-TDKDVRKAALEAVAAVMK 443 (815)
T ss_pred CCcCcchhhH--HHHhHHHhhhccC-CcHHHHHHHHHHHHHHHH
Confidence 21 1100000 1155666665555 788999998888776553
No 224
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.38 E-value=17 Score=36.53 Aligned_cols=138 Identities=14% Similarity=0.094 Sum_probs=82.0
Q ss_pred CchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc-CCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHH---
Q 009514 201 HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVI--- 276 (533)
Q Consensus 201 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L-~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~--- 276 (533)
+...|..|++.|++.+...++-...... ..+..++.-| ++.+.+|+..+..+|..+.....+.. .....++
T Consensus 271 ~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~----l~~~~l~ial 345 (533)
T KOG2032|consen 271 SAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD----LESYLLNIAL 345 (533)
T ss_pred hhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc----hhhhchhHHH
Confidence 3467889999999998764433222222 2444444444 55578999999999988875532211 2233333
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCC-chhHHHHHH--hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514 277 PLVRLLDDTSTAVQVAALGAISNIVVDF-TTRRSTFIR--LGGVKLLVQLSKSMDSTIRLNALRALRNLIF 344 (533)
Q Consensus 277 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~~-~~~~~~~~~--~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~ 344 (533)
.+-.+..+.+++++.++...++.|+.-. ...+..+.+ .+...+++-.+.++++.+ ..|++.....+.
T Consensus 346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~v-a~ACr~~~~~c~ 415 (533)
T KOG2032|consen 346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYV-ARACRSELRTCY 415 (533)
T ss_pred HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHH-HHHHHHHHHhcC
Confidence 3555677899999999998888776522 233333332 223334444456666653 345555555543
No 225
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=91.27 E-value=9.9 Score=33.57 Aligned_cols=119 Identities=21% Similarity=0.284 Sum_probs=76.6
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccC--ChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchH
Q 009514 316 GVKLLVQLSKSMDSTIRLNALRALRNLIFLA--EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV 393 (533)
Q Consensus 316 ~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~--~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 393 (533)
-++.++++..+++..+|..|+..+.-..... .| ...+|.++.|..|+++.++..|...+..+....++.+
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP--------~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNP--------KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh--------HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 3566777888899999999999998776432 22 1257889999999999999999999999998876655
Q ss_pred HHHHhhcC-chHHHHHHHhccCCchhH---HHHHHHHHHHhccCChhhHHHHHH
Q 009514 394 EYIFAEDG-IILDAVGRQLRIASKAEI---EIQGMYVLGNVATGKESHKEAVMD 443 (533)
Q Consensus 394 ~~i~~~~~-~~~~~L~~~L~~~~~~~v---~~~a~~~L~~l~~~~~~~~~~~~~ 443 (533)
..-+.+|- ...+.- +.+..+..... ....+..+..+..++...|..++.
T Consensus 81 ~~~~~~gi~~af~~~-~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl~ 133 (187)
T PF12830_consen 81 ESRYSEGIRLAFDYQ-RRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFLK 133 (187)
T ss_pred HHHHHHHHHHHHHHH-HHhcCCccccccccchHHHHHHHHHHhcccHhHHHHHH
Confidence 54444431 011111 22222111111 445555555666555566766663
No 226
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.76 E-value=39 Score=40.01 Aligned_cols=107 Identities=20% Similarity=0.170 Sum_probs=65.6
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCChHhHHHHHH
Q 009514 278 LVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFM 356 (533)
Q Consensus 278 Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~~~~~~~~i~~ 356 (533)
++..+..+++..+..+..+++.++...+.. .++ ++..+.+..-+++ .++..|..-.-+++.+-.+.+.-...+...
T Consensus 881 ~~~sl~~~~p~~rc~~~ea~arLaq~v~~~--~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~ 957 (2067)
T KOG1822|consen 881 IVNSLINPNPKLRCAAAEALARLAQVVGSA--PFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLN 957 (2067)
T ss_pred HhhhhccCChHHHHHHHHHHHHHHHhcccc--chH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcc
Confidence 445556789999999999999998754432 111 2344555544444 455666666677777654332211112121
Q ss_pred hhcHHHHHhhhCCCC-hhHHHHHHHHHHHhhcC
Q 009514 357 ELTASLLASLICDPE-PSVQEQALALVRNLVDG 388 (533)
Q Consensus 357 ~~~~~~l~~lL~~~~-~~v~~~a~~~L~~l~~~ 388 (533)
.++..++.+-.|+. +.||++++.++.-+.+.
T Consensus 958 -t~v~illal~~Ds~~p~VqtwSL~al~~i~~s 989 (2067)
T KOG1822|consen 958 -TSVSILLALATDSTSPVVQTWSLHALALILDS 989 (2067)
T ss_pred -cHHHHHHHHhhcCCCchhhhhHHHHHHHHHcC
Confidence 13566777776655 48999998888777655
No 227
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.68 E-value=4.3 Score=38.11 Aligned_cols=133 Identities=11% Similarity=0.182 Sum_probs=84.7
Q ss_pred HHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHH
Q 009514 360 ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE 439 (533)
Q Consensus 360 ~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 439 (533)
+...++.|.+.++......+..++.++.-+++.....+.+ ++-.+++-+.+ +...|-..|+.+++.+...-....+
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~---vii~vvkslKN-lRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHE---VIIAVVKSLKN-LRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888899999999999999987776655555443 33444455555 6778889999999988864433444
Q ss_pred HHHHHhhHhhhhhhHHHHHHhhcc---CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHH
Q 009514 440 AVMDQLLLRAENKAQSCIIKFLQS---NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKL 516 (533)
Q Consensus 440 ~~~~~~~~~~~~~~~~~lv~~L~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~ 516 (533)
..++ ..+..+|.. ++.-+|+.|-.+|..+..+ .++.. +++.|+..+...++.++.
T Consensus 166 ~~ld-----------~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~---vtp~~--------~L~~L~~~~~~~n~r~r~ 223 (334)
T KOG2933|consen 166 QELD-----------DLVTQLLHKASQDNRFVREDAEKALVAMVNH---VTPQK--------LLRKLIPILQHSNPRVRA 223 (334)
T ss_pred HHHH-----------HHHHHHHhhhcccchHHHHHHHHHHHHHHhc---cChHH--------HHHHHHHHHhhhchhhhh
Confidence 3322 334445543 3455899999999988853 33222 234455555555555554
Q ss_pred HH
Q 009514 517 RV 518 (533)
Q Consensus 517 ~a 518 (533)
.+
T Consensus 224 ~a 225 (334)
T KOG2933|consen 224 KA 225 (334)
T ss_pred hh
Confidence 43
No 228
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=90.67 E-value=25 Score=37.18 Aligned_cols=234 Identities=18% Similarity=0.153 Sum_probs=132.7
Q ss_pred hhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhh
Q 009514 116 ARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHL 195 (533)
Q Consensus 116 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L 195 (533)
+.-+..=.+.|..+...-+ ..+..+.++|.|+..+.+..-+ -...-.+..++...+ +..+....+|.|...+
T Consensus 287 n~qKs~Flk~Ls~~ip~fp----~rv~~~kiLP~L~~el~n~~~v-p~~LP~v~~i~~~~s---~~~~~~~~~p~l~pi~ 358 (700)
T KOG2137|consen 287 NSQKSSFLKGLSKLIPTFP----ARVLFQKILPTLVAELVNTKMV-PIVLPLVLLIAEGLS---QNEFGPKMLPALKPIY 358 (700)
T ss_pred cHHHHHHHHHHHHhhccCC----HHHHHHhhhhHHHHHhcccccc-ccccchhhhhhhccc---hhhhhhhhhHHHHHHh
Confidence 3333333444554444332 3356678888888877532111 111111111221111 1122334467777766
Q ss_pred hcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcH
Q 009514 196 QKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV 275 (533)
Q Consensus 196 ~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i 275 (533)
... .+. +.-+..+-++-.-.+.....-+...++|.|...+++.+..+|..+...+..++...+. . ++...++
T Consensus 359 ~~~-~~~---~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~-~vk~~il 430 (700)
T KOG2137|consen 359 SAS-DPK---QALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---P-FVKQAIL 430 (700)
T ss_pred ccC-Ccc---cchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---H-HHHHHHH
Confidence 542 222 2222233322110112223345567899999999999999999999999999876442 1 4666778
Q ss_pred HHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHH
Q 009514 276 IPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEI 354 (533)
Q Consensus 276 ~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i 354 (533)
|.|-.+. .+++..++..++-|+..++.. .....-...+.++.+-.+..++.+....+.+..++..... ....+
T Consensus 431 P~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~--~g~ev 504 (700)
T KOG2137|consen 431 PRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIY--SGVEV 504 (700)
T ss_pred HHhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc--cceee
Confidence 8887764 477899999999999998831 1111112345555566667888888888887777754221 11345
Q ss_pred HHhhcHHHHHhhhCCCC
Q 009514 355 FMELTASLLASLICDPE 371 (533)
Q Consensus 355 ~~~~~~~~l~~lL~~~~ 371 (533)
..+..++.++.+...+.
T Consensus 505 ~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 505 MAENVLPLLIPLSVAPS 521 (700)
T ss_pred ehhhhhhhhhhhhhccc
Confidence 55666777776665443
No 229
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.44 E-value=4.3 Score=35.00 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=76.4
Q ss_pred cHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc---CCh
Q 009514 359 TASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT---GKE 435 (533)
Q Consensus 359 ~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~---~~~ 435 (533)
...++..+|.+++++-+..++..+.-.+..++ .+.+.++++..+..+.+.|+....+.+++.++.++..+.. +.+
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 35678889999999999888888888876642 2344466666888899999885567788888888877764 444
Q ss_pred hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 436 SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
.....+.... -..+++.+++++++ ......+..+|..+..
T Consensus 104 ~l~Rei~tp~----l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 104 TLTREIATPN----LPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred chHHHHhhcc----HHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 3222222211 13455666666654 4566677777776664
No 230
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=90.36 E-value=6.9 Score=41.59 Aligned_cols=163 Identities=17% Similarity=0.210 Sum_probs=92.9
Q ss_pred cHHHHHHhhcCC----CHHHHHHHHHHHHHhhccC---ChHhHHHHHHhhcHHHHHhhh----CCCChhHHHHHHHHHHH
Q 009514 316 GVKLLVQLSKSM----DSTIRLNALRALRNLIFLA---EDKCKEEIFMELTASLLASLI----CDPEPSVQEQALALVRN 384 (533)
Q Consensus 316 ~i~~L~~ll~~~----~~~~~~~al~aL~~l~~~~---~~~~~~~i~~~~~~~~l~~lL----~~~~~~v~~~a~~~L~~ 384 (533)
.+..+..+++++ ++.++..++-+++++.... .+.+...+.+ ..++.+.+.| +..+.+.+...+.+|+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLE-ELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHH-HHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 456666777653 4668888888888876421 1111111111 1234444433 34556666777888888
Q ss_pred hhcCCcchHHHHHhhcCchHHHHHHHhcc--CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 009514 385 LVDGRINSVEYIFAEDGIILDAVGRQLRI--ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ 462 (533)
Q Consensus 385 l~~~~~~~~~~i~~~~~~~~~~L~~~L~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~ 462 (533)
+.... .+..+...+.. ..+..++..|+++|..++...+.... +.+..++.
T Consensus 473 ~g~~~-------------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~---------------~~l~~i~~ 524 (574)
T smart00638 473 AGHPS-------------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ---------------EVLLPIYL 524 (574)
T ss_pred cCChh-------------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH---------------HHHHHHHc
Confidence 76542 34455555542 13567999999999988754442221 34555555
Q ss_pred c--CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhh-cCCCCcHHHHHHHH
Q 009514 463 S--NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV-NDPCLDVKLRVKTA 521 (533)
Q Consensus 463 ~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll-~~~~~~v~~~a~~a 521 (533)
+ .++++|.+|...|...-. +. ..+..+...+ .+++..|...+...
T Consensus 525 n~~e~~EvRiaA~~~lm~t~P-----~~---------~~l~~ia~~l~~E~~~QV~sfv~S~ 572 (574)
T smart00638 525 NRAEPPEVRMAAVLVLMETKP-----SV---------ALLQRIAELLNKEPNLQVASFVYSH 572 (574)
T ss_pred CCCCChHHHHHHHHHHHhcCC-----CH---------HHHHHHHHHHhhcCcHHHHHHhHHh
Confidence 4 467899999988876542 11 1234555555 34555565554443
No 231
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=90.28 E-value=1.6 Score=38.60 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=72.7
Q ss_pred CCCHHHHHHHHHHHHHHhhccccccchh---------------hhhcCcHHHHHHhhcC------CCHHHHHHHHHHHHH
Q 009514 241 HDSSDVRSAACMCLRSVSRSIKNLSAGS---------------FMNETIVIPLVRLLDD------TSTAVQVAALGAISN 299 (533)
Q Consensus 241 ~~~~~v~~~a~~~L~~ls~~~~~~~~~~---------------~~~~~~i~~Lv~lL~~------~~~~v~~~a~~aL~n 299 (533)
+++...-..++..|.|+++..+. +..- ......+..|+.++.. ...+-....+..+.|
T Consensus 6 ~~~~~~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N 84 (192)
T PF04063_consen 6 DPKSPLADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN 84 (192)
T ss_pred CCCcchHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence 44445556677888888776322 2110 0123456777776643 234556788899999
Q ss_pred HhcCCchhHHHHHHh--Cc--HHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHH
Q 009514 300 IVVDFTTRRSTFIRL--GG--VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM 356 (533)
Q Consensus 300 l~~~~~~~~~~~~~~--~~--i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~ 356 (533)
++. .+..++.+.+. +. +..|+.++.+.+..-|..++.++.|+|...+ ....++.
T Consensus 85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~--~H~~LL~ 142 (192)
T PF04063_consen 85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTD--SHEWLLS 142 (192)
T ss_pred hcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHh--HHHHhcC
Confidence 996 56777777753 33 7788888888876667789999999997543 4455544
No 232
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=90.21 E-value=3.8 Score=36.08 Aligned_cols=80 Identities=16% Similarity=0.088 Sum_probs=57.0
Q ss_pred HHHHHHcCcHHHHHHhhhcCC-------CCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHH
Q 009514 179 QKLAFEVNGVDKLYNHLQKGS-------LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAAC 251 (533)
Q Consensus 179 ~~~~~~~~~l~~L~~~L~~~~-------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~ 251 (533)
-+.+++.||+..|+++|..-. .+......++.++..+..........+...+.+..+...|.+++..+|..++
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 355678899988888776431 1234667789999998865433333344568999999999999999999999
Q ss_pred HHHHHHh
Q 009514 252 MCLRSVS 258 (533)
Q Consensus 252 ~~L~~ls 258 (533)
..|..++
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998775
No 233
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.18 E-value=15 Score=33.80 Aligned_cols=202 Identities=13% Similarity=0.109 Sum_probs=115.5
Q ss_pred HHHHH-hcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514 233 KLVVD-ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF 311 (533)
Q Consensus 233 ~~l~~-~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 311 (533)
+.++. .-+..++.++.....+|..++.+.. . ...-++..|..+...++.+.+..+...+..+....+...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~-~-----~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKN-V-----CVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCc-c-----chhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 34444 4456789999999999999987731 1 123456677777788888887778888877775433221
Q ss_pred HHhCcHHHHHHh-----h---cCC--CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhh-CCCChhHHHHHHH
Q 009514 312 IRLGGVKLLVQL-----S---KSM--DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQEQALA 380 (533)
Q Consensus 312 ~~~~~i~~L~~l-----l---~~~--~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL-~~~~~~v~~~a~~ 380 (533)
+.+..++.. . .+. ..+.......++..+|...+ + ...-.++.+..++ .+.++.++..++.
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p-~-----~g~~ll~~ls~~L~~~~~~~~~alale 144 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRP-D-----HGVDLLPLLSGCLNQSCDEVAQALALE 144 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhCh-h-----hHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 223333322 1 111 12223333345566655332 2 1112356667777 7888899999999
Q ss_pred HHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHH-HHHHHhhHhhhhhhHHHHHH
Q 009514 381 LVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE-AVMDQLLLRAENKAQSCIIK 459 (533)
Q Consensus 381 ~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~lv~ 459 (533)
+|+.++..+ +-.+.. .+..+.+.|.....+.+....+..+..+..+.-+..+ ..+. .+++..+-+
T Consensus 145 ~l~~Lc~~~---vvd~~s----~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~-------~~~l~~lW~ 210 (234)
T PF12530_consen 145 ALAPLCEAE---VVDFYS----AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELK-------RQILQLLWE 210 (234)
T ss_pred HHHHHHHHh---hccHHH----HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHH-------HHHHHHHHh
Confidence 999999542 222222 5566777776545677776555555544443322111 1111 455566666
Q ss_pred hhccCCh
Q 009514 460 FLQSNDS 466 (533)
Q Consensus 460 ~L~~~~~ 466 (533)
+..+.+.
T Consensus 211 ~~~~~~~ 217 (234)
T PF12530_consen 211 YTSSSDV 217 (234)
T ss_pred hcccccc
Confidence 6665553
No 234
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=90.09 E-value=15 Score=33.75 Aligned_cols=195 Identities=13% Similarity=0.052 Sum_probs=110.5
Q ss_pred HHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcCcH
Q 009514 110 IVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGV 188 (533)
Q Consensus 110 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l 188 (533)
+.+..+++.+....++|..++.++. ....-++..|..+.+.+ ...+.-+.+.+..+-..++... +.+
T Consensus 9 l~~~~~~~~~~~~L~~L~~l~~~~~------~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L 76 (234)
T PF12530_consen 9 LGKISDPELQLPLLEALPSLACHKN------VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFL 76 (234)
T ss_pred hcCCCChHHHHHHHHHHHHHhccCc------cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHH
Confidence 5567788999999999999888651 11223455555555533 3334456667777765554321 223
Q ss_pred HHHHHh--h------hcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc-CCCCHHHHHHHHHHHHHHhh
Q 009514 189 DKLYNH--L------QKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSVSR 259 (533)
Q Consensus 189 ~~L~~~--L------~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L-~~~~~~v~~~a~~~L~~ls~ 259 (533)
..++.. + .+.+...+..-....++..+|...++ .....++.+..+| ++.++.++..+..+|..++.
T Consensus 77 ~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~ 151 (234)
T PF12530_consen 77 QPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE 151 (234)
T ss_pred HHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 333332 1 11112233334445577777766554 2334788999999 78888999999999999885
Q ss_pred ccccccchhhhh-cCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCch-hHHHHHHhCcHHHHHHhhcCCC
Q 009514 260 SIKNLSAGSFMN-ETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT-RRSTFIRLGGVKLLVQLSKSMD 328 (533)
Q Consensus 260 ~~~~~~~~~~~~-~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~-~~~~~~~~~~i~~L~~ll~~~~ 328 (533)
. + +++ ......+.+-++ +..+.+...-+.-+..+....-+ .........++..+.++....+
T Consensus 152 ~-~------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~ 216 (234)
T PF12530_consen 152 A-E------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD 216 (234)
T ss_pred H-h------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence 4 1 111 223334444443 44666766655555544432222 1223344566677777766654
No 235
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=89.98 E-value=34 Score=37.54 Aligned_cols=239 Identities=10% Similarity=0.123 Sum_probs=134.9
Q ss_pred hhhcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc----CCC----HHHHHHH
Q 009514 269 FMNETIVIPLVRLLDD-----TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK----SMD----STIRLNA 335 (533)
Q Consensus 269 ~~~~~~i~~Lv~lL~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~----~~~----~~~~~~a 335 (533)
+.+.|++..++.++.+ .+.+.....+..|...+. ...+++.+++.|+++.|++.+. .+. ..+-+.-
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L 191 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL 191 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence 3456888888888863 345666666777766664 5678889999999999998764 333 4566666
Q ss_pred HHHHHHhhccCChHhHH---HHH--------HhhcHHHHHhhhCC----CChhHHHHHHHHHHHhhcCCcchHHHHHhhc
Q 009514 336 LRALRNLIFLAEDKCKE---EIF--------MELTASLLASLICD----PEPSVQEQALALVRNLVDGRINSVEYIFAED 400 (533)
Q Consensus 336 l~aL~~l~~~~~~~~~~---~i~--------~~~~~~~l~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~ 400 (533)
+..+..+.......... ... ....+..+++.+.+ .++.+....+++|-+++.++++..+.+++.
T Consensus 192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~- 270 (802)
T PF13764_consen 192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH- 270 (802)
T ss_pred HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-
Confidence 66666654422211000 000 11124555555554 368899999999999999987755554442
Q ss_pred CchHHHHHHHhc-----c--CCchhHHHHHHHHH-HHhccCC--hhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh----
Q 009514 401 GIILDAVGRQLR-----I--ASKAEIEIQGMYVL-GNVATGK--ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS---- 466 (533)
Q Consensus 401 ~~~~~~L~~~L~-----~--~~~~~v~~~a~~~L-~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~---- 466 (533)
+...+. . .++..+...++.-+ .++-... ...++.+++ .|++...+++|...-+
T Consensus 271 ------F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-------~GIv~~a~~YL~~~~P~~~~ 337 (802)
T PF13764_consen 271 ------FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-------SGIVQDAIDYLLKHFPSLKN 337 (802)
T ss_pred ------HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-------hhHHHHHHHHHHHhCccccc
Confidence 222221 1 12223333333322 2222211 235566665 7899888888764222
Q ss_pred ----h--------HHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcC-CCCcHHHHHHHHHHHHhh
Q 009514 467 ----R--------LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND-PCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 467 ----~--------v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~-~~~~v~~~a~~aL~~~~~ 527 (533)
+ ....+...|.-++. +-. ..+.+...+.++.+-+|-.- ++..+-..|-..|..+.+
T Consensus 338 ~~s~eWk~~l~~psLp~iL~lL~GLa~----gh~-~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 338 TDSPEWKEFLSRPSLPYILRLLRGLAR----GHE-PTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred CCCHHHHHHhcCCcHHHHHHHHHHHHh----cCH-HHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 1 12345666666764 212 22334556677777666543 345555555555555443
No 236
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=89.87 E-value=48 Score=39.17 Aligned_cols=340 Identities=15% Similarity=0.156 Sum_probs=160.0
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHH---HHH
Q 009514 105 SCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDM---QKL 181 (533)
Q Consensus 105 ~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~---~~~ 181 (533)
..+++++.--+..+|......|-.+..+. -...++..|.+++.+++.+......+|++|--+.+.. +..
T Consensus 195 ~kl~~~l~~ap~~lq~eiI~~LPeIl~ds--------~h~~v~~~L~~ll~~~~~L~~~iLd~Ls~L~Ls~~~l~~vr~~ 266 (1426)
T PF14631_consen 195 DKLFEVLSIAPVELQKEIISSLPEILDDS--------QHDEVVEELLELLQENPELTVPILDALSNLNLSPELLEEVREK 266 (1426)
T ss_dssp HHHHHHHHHS-TTTHHHHHHTHHHHS-GG--------GHHHHHHHHHHHHHH-STTHHHHHHHHHHS---HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhcch--------hHHHHHHHHHHHHhcCCchhhhHHHHHhcCCCCHHHHHHHHHH
Confidence 33444554444455555555555555432 1235777888888877777777888999886554432 222
Q ss_pred HHH------cCcHHHHHHhhhcCCCCchhHHHHHHHHHH-hh-----------ccchhhhHhh----------hhhchHH
Q 009514 182 AFE------VNGVDKLYNHLQKGSLHPRRFEGILLALAD-MC-----------SKLECCRSRC----------LSLQVLK 233 (533)
Q Consensus 182 ~~~------~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~-l~-----------~~~~~~~~~~----------~~~~~l~ 233 (533)
+.+ .+.+|.++++|.......+. ...+.-|.. |- ......+..- ...+...
T Consensus 267 vl~~L~s~~~e~LP~lirFLL~s~t~~da-~evI~~LR~~L~~~~~v~~~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~ 345 (1426)
T PF14631_consen 267 VLEKLSSVDLEDLPVLIRFLLQSITPSDA-VEVISELRENLDFEQCVLPSRIQASQRKLKNKGNASSSGNQENSSQDCEK 345 (1426)
T ss_dssp HHHSTTSS-TTHHHHHHHHHHHS-SSTTH-HHHHHHHHHHHH-------------------------------HHHHHHH
T ss_pred HHHHHhcCChhhhHHHHHHHHHhCCcccH-HHHHHHHHHHccccccccchhhcccccccccCcccccccccccccccHHH
Confidence 322 24489999977654222221 111111111 10 0000000000 0011233
Q ss_pred HHHHhcCCC---CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCchhHH
Q 009514 234 LVVDALAHD---SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFTTRRS 309 (533)
Q Consensus 234 ~l~~~L~~~---~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~ 309 (533)
.+++.++.+ +..+..++.+.+.++... .+...+..++-++ .+.+..-+..+-..+.+-... +....
T Consensus 346 lil~~lks~lr~~k~l~eawiK~I~~~~~~---------~~hkv~Dl~lLlil~s~~~~~~k~ie~ilkkKI~~-g~it~ 415 (1426)
T PF14631_consen 346 LILDVLKSGLRFSKDLSEAWIKAIESLEDA---------SDHKVIDLWLLLILYSINEDNRKSIEKILKKKIKS-GHITE 415 (1426)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHGGGS---------TT--THHHHHHHHHHHH-HHHHHHHHHHHHHHHTT-T-S-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhcCCCc---------cccchHHHHHHHHHHcCCccchHHHHHHHHHHHHh-CcccH
Confidence 455555532 556777777777766432 1234444544433 334444556666666665532 12221
Q ss_pred HHH----------HhCcHHHHHH----hhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHH
Q 009514 310 TFI----------RLGGVKLLVQ----LSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQ 375 (533)
Q Consensus 310 ~~~----------~~~~i~~L~~----ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~ 375 (533)
.++ -.+..+.++. ++.++++.++..+......+....+..+++.++ ..|+.++.+++..-.
T Consensus 416 ~ll~~~f~~~~~vL~~~f~siL~la~~Ll~S~e~~v~~FG~~~Y~~lF~~fds~~qqeVv-----~~Lvthi~sg~~~ev 490 (1426)
T PF14631_consen 416 QLLDQTFKGHSEVLKDYFPSILSLAQSLLRSKEPSVREFGSHLYKYLFKEFDSYCQQEVV-----GALVTHIGSGNSQEV 490 (1426)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-HHHHHHHH-----HHHHHHHHH--HHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhhccchhHHHHH-----HHHHHHHcCCcHHHH
Confidence 111 1244555554 467788999999888888877655544555544 455666655555555
Q ss_pred HHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHH
Q 009514 376 EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQS 455 (533)
Q Consensus 376 ~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (533)
..|+.+|..++..+++.. ..... .+.-+...+.+-..++++. ...+|+.++.+.......+- .++.-
T Consensus 491 ~~aL~vL~~L~~~~~~~l---~~fa~-~l~giLD~l~~Ls~~qiR~-lf~il~~La~~~~~~~s~i~--------del~i 557 (1426)
T PF14631_consen 491 DAALDVLCELAEKNPSEL---QPFAT-FLKGILDYLDNLSLQQIRK-LFDILCTLAFSDSSSSSSIQ--------DELHI 557 (1426)
T ss_dssp HHHHHHHHHHHHH-HHHH---HHTHH-HHHGGGGGGGG--HHHHHH-HHHHHHHHHHHHSS---HHH--------HHHHH
T ss_pred HHHHHHHHHHHhccHHHH---HHHHH-HHHHHHHHHhcCCHHHHHH-HHHHHHHHhcCCcccchhhH--------HHHHH
Confidence 788999999987654422 22110 1222222333322334443 35556655542211111121 23333
Q ss_pred HHHHhhccCChhHHHH----HHHHHHhhcC
Q 009514 456 CIIKFLQSNDSRLRTA----AVWAVLNLTC 481 (533)
Q Consensus 456 ~lv~~L~~~~~~v~~~----a~~~L~~l~~ 481 (533)
.+-+.|.+++...+.. |+..+..++.
T Consensus 558 vIRKQLss~~~~~K~~GIIGav~~i~~la~ 587 (1426)
T PF14631_consen 558 VIRKQLSSSNPKYKRIGIIGAVMMIKHLAA 587 (1426)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHhhcCCcHHHHHHhHHHHHHHHHHHHH
Confidence 5556777777765543 4444444443
No 237
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.78 E-value=34 Score=37.23 Aligned_cols=152 Identities=18% Similarity=0.188 Sum_probs=83.2
Q ss_pred HHHHHHhCcHHHHHHhhcCC--------CHHHHHHHHHHHHHhhccCChHhHHHHHHhh--------cHHHHHhhhC---
Q 009514 308 RSTFIRLGGVKLLVQLSKSM--------DSTIRLNALRALRNLIFLAEDKCKEEIFMEL--------TASLLASLIC--- 368 (533)
Q Consensus 308 ~~~~~~~~~i~~L~~ll~~~--------~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~--------~~~~l~~lL~--- 368 (533)
.+.+...+++..++++..-+ ..++...|+.+|+-++. -|+.+..+.+.. |+..++..-.
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~--iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~ 671 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS--IPDIQKALAHATLSNNRAYDGIAIILDAANGSN 671 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe--cchHHHHHHHHHhhcccccCceEEEeecccccc
Confidence 34566778888888876532 34567778877776543 355666655532 2222332221
Q ss_pred C-CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHH---HHHHHHhccCChhhHHHHHHH
Q 009514 369 D-PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG---MYVLGNVATGKESHKEAVMDQ 444 (533)
Q Consensus 369 ~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a---~~~L~~l~~~~~~~~~~~~~~ 444 (533)
+ -|++++..|+.++.|+.+..|......+. +..+++.++.+...+ ...|.+.. ......+-
T Consensus 672 ~i~Dpei~~~AL~vIincVc~pp~~r~s~i~----------~v~S~~g~~r~~l~~~~ks~~le~~l---~~mw~~Vr-- 736 (1516)
T KOG1832|consen 672 SIVDPEIIQPALNVIINCVCPPPTTRPSTIV----------AVGSQSGDRRIFLGAGTKSAKLEQVL---RQMWEAVR-- 736 (1516)
T ss_pred cccCHHHHHHHHhhhheeecCCCCcchhhhh----------hccccCCCccccccCCCchHHHHHHH---HHHHHHHh--
Confidence 1 27899999999999999887643222211 111111111111000 00111110 00111222
Q ss_pred hhHhhhhhhHHHHHHhhccCC-----hhHHHHHHHHHHhhcC
Q 009514 445 LLLRAENKAQSCIIKFLQSND-----SRLRTAAVWAVLNLTC 481 (533)
Q Consensus 445 ~~~~~~~~~~~~lv~~L~~~~-----~~v~~~a~~~L~~l~~ 481 (533)
..+++..|+++|+..+ ..+|.-||.+|..|+.
T Consensus 737 -----~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR 773 (1516)
T KOG1832|consen 737 -----GNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLAR 773 (1516)
T ss_pred -----cCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhcccc
Confidence 2456688999988532 3599999999999995
No 238
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=89.77 E-value=6.8 Score=32.61 Aligned_cols=95 Identities=7% Similarity=0.111 Sum_probs=63.0
Q ss_pred CCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhH
Q 009514 368 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL 447 (533)
Q Consensus 368 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 447 (533)
.++|+......+..+..= +.... .++..+.+.|.+ +++.++..|+.+|-.+...+......-+.
T Consensus 15 ~~~dw~~ileicD~In~~----~~~~k-------~a~rai~krl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~eva---- 78 (139)
T cd03567 15 REEDWEAIQAFCEQINKE----PEGPQ-------LAVRLLAHKIQS-PQEKEALQALTVLEACMKNCGERFHSEVG---- 78 (139)
T ss_pred CCCCHHHHHHHHHHHHcC----CccHH-------HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHHH----
Confidence 355666666666555321 11111 166778888887 88999999999998888754333433333
Q ss_pred hhhhhhHHHHHHhhcc------CChhHHHHHHHHHHhhc
Q 009514 448 RAENKAQSCIIKFLQS------NDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 448 ~~~~~~~~~lv~~L~~------~~~~v~~~a~~~L~~l~ 480 (533)
..+++..+++++.. .+..|+......+..-+
T Consensus 79 --s~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 79 --KFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred --hHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 26788889998853 46789999888886655
No 239
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=89.48 E-value=1.7 Score=45.47 Aligned_cols=137 Identities=14% Similarity=0.093 Sum_probs=97.7
Q ss_pred CcccccccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhc--CChHHHHHHHHHHHHHhcC
Q 009514 10 KYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG--GSLIQRDASLESIATIFKN 87 (533)
Q Consensus 10 ~~~l~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~v~~~al~aL~~l~~~ 87 (533)
+++-+.+..+|.|..-+++.+..+|+.+..++...++.-+ ...++.-.+|.|-.+.. .+..++..++.|++.+.+.
T Consensus 382 ~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~ 459 (700)
T KOG2137|consen 382 PPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR 459 (700)
T ss_pred ChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH
Confidence 4556667889999999999999999999999999986544 34556667777777643 2568999999999998832
Q ss_pred ChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC
Q 009514 88 NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP 157 (533)
Q Consensus 88 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~ 157 (533)
-+.. .+ .+.+..+.+..+..++.+...-.+....+....... ..+....++|.++.+...+
T Consensus 460 -lD~~-~v-----~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g--~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 460 -LDKA-AV-----LDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG--VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred -HHHH-Hh-----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc--eeeehhhhhhhhhhhhhcc
Confidence 2221 11 345677777888888988777776666665543221 2356678999998887654
No 240
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=89.32 E-value=1.5 Score=31.80 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc-CCCCcHHHHHHHHHHHHhhhccc
Q 009514 469 RTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN-DPCLDVKLRVKTALEQFNSFDDS 531 (533)
Q Consensus 469 ~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~-~~~~~v~~~a~~aL~~~~~~~~~ 531 (533)
.+.|.|++++++. ++.....+.+.++++.++++.+ ++...+|--+..+|.-+++..++
T Consensus 4 lKaaLWaighIgs-----s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G 62 (73)
T PF14668_consen 4 LKAALWAIGHIGS-----SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEG 62 (73)
T ss_pred HHHHHHHHHhHhc-----ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHH
Confidence 4789999999994 4456677778899999999984 67889999999999988776543
No 241
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=89.09 E-value=1.6 Score=38.57 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=60.5
Q ss_pred chhhhHhhhhhchHHHHHHhcCC---------CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHH
Q 009514 219 LECCRSRCLSLQVLKLVVDALAH---------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 289 (533)
Q Consensus 219 ~~~~~~~~~~~~~l~~l~~~L~~---------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v 289 (533)
+..+.+.+++.||+..|+++|.. .+......+..||..+..+....... +...+++..|+..|.+++..+
T Consensus 96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v-~~~~~~v~~i~~~L~s~~~~~ 174 (187)
T PF06371_consen 96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAV-LSHPDSVNLIALSLDSPNIKT 174 (187)
T ss_dssp -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHH-HCSSSHHHHHHHT--TTSHHH
T ss_pred CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHH-HcCcHHHHHHHHHHCCCCHHH
Confidence 34667788889999999998852 34578888999999887653322222 456788999999999999999
Q ss_pred HHHHHHHHHHHh
Q 009514 290 QVAALGAISNIV 301 (533)
Q Consensus 290 ~~~a~~aL~nl~ 301 (533)
+..++..|..++
T Consensus 175 r~~~leiL~~lc 186 (187)
T PF06371_consen 175 RKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998775
No 242
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=88.81 E-value=28 Score=35.08 Aligned_cols=235 Identities=14% Similarity=0.101 Sum_probs=132.1
Q ss_pred hhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCC
Q 009514 269 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAE 347 (533)
Q Consensus 269 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~ 347 (533)
..+..++..|+.+++++|++-|......|.++-..+...+..+. ......+.+++... ........++.++.+..+-.
T Consensus 129 ~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir-~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~ 207 (409)
T PF01603_consen 129 YIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIR-KSINNIFYRFIYETERHNGIAELLEILGSIINGFA 207 (409)
T ss_dssp TS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHH-HHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--
T ss_pred HcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccC
Confidence 56778899999999999999999999999998776666665544 45667777777654 34456677888888876533
Q ss_pred hHhHHHHHHhhcHHHHHhhhCCCChhH-HHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHH
Q 009514 348 DKCKEEIFMELTASLLASLICDPEPSV-QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYV 426 (533)
Q Consensus 348 ~~~~~~i~~~~~~~~l~~lL~~~~~~v-~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~ 426 (533)
...++... ......++.|.+.+.... ..+-..++......++..... ++..+.+..-. .++.=..--+.-
T Consensus 208 ~plk~eh~-~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~-------~i~~llk~WP~-t~s~Kev~FL~e 278 (409)
T PF01603_consen 208 VPLKEEHK-QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEP-------VIKGLLKHWPK-TNSQKEVLFLNE 278 (409)
T ss_dssp SS--HHHH-HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHH-------HHHHHHHHS-S-S-HHHHHHHHHH
T ss_pred CCCcHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHH-------HHHHHHHhCCC-CCchhHHHHHHH
Confidence 11222211 122455666666554322 334444444444444443222 22233232211 222222223334
Q ss_pred HHHhccC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCC---cHHH
Q 009514 427 LGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG---IVSH 502 (533)
Q Consensus 427 L~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g---~~~~ 502 (533)
+..+... .+.....+. ..+...+...++|++..|-+.|.....|= +...+.... ++|.
T Consensus 279 l~~il~~~~~~~f~~i~--------~~lf~~la~ci~S~h~qVAErAl~~w~n~----------~~~~li~~~~~~i~p~ 340 (409)
T PF01603_consen 279 LEEILEVLPPEEFQKIM--------VPLFKRLAKCISSPHFQVAERALYFWNNE----------YFLSLISQNSRVILPI 340 (409)
T ss_dssp HHHHHTT--HHHHHHHH--------HHHHHHHHHHHTSSSHHHHHHHHGGGGSH----------HHHHHHHCTHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHH--------HHHHHHHHHHhCCCCHHHHHHHHHHHCCH----------HHHHHHHhChHHHHHH
Confidence 4444442 223333443 35668888999999999998887544321 222222222 3444
Q ss_pred HHhhh----cC-CCCcHHHHHHHHHHHHhhhccc
Q 009514 503 VKNMV----ND-PCLDVKLRVKTALEQFNSFDDS 531 (533)
Q Consensus 503 L~~ll----~~-~~~~v~~~a~~aL~~~~~~~~~ 531 (533)
+..-+ +. =+..++..|..++.-+.+...+
T Consensus 341 i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~ 374 (409)
T PF01603_consen 341 IFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPK 374 (409)
T ss_dssp HHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHH
Confidence 44443 22 2778999999999888776543
No 243
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.80 E-value=2.8 Score=43.59 Aligned_cols=129 Identities=13% Similarity=0.166 Sum_probs=91.9
Q ss_pred CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhh
Q 009514 370 PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRA 449 (533)
Q Consensus 370 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 449 (533)
+|+.+|..|--.|..+.+-+. +...+ -++.+...+..+++|.++.++.-.++.++.......+.
T Consensus 908 sd~~lq~aA~l~L~klMClS~---~fc~e----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de--------- 971 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSF---EFCSE----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE--------- 971 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhH---HHHHH----HHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH---------
Confidence 678888888777777655422 12222 36788888887799999999999998888643322222
Q ss_pred hhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514 450 ENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 450 ~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~ 526 (533)
.-.-|.+-|.+.+..||..|..++..+.-. | .+--.|-++.+..+|+|++.+..+-|..-+..++
T Consensus 972 ---~t~yLyrrL~De~~~V~rtclmti~fLila---g------q~KVKGqlg~ma~~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 972 ---HTHYLYRRLGDEDADVRRTCLMTIHFLILA---G------QLKVKGQLGKMALLLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred ---HHHHHHHHhcchhhHHHHHHHHHHHHHHHc---c------ceeeccchhhhHhhccCCcchHHHHHHHHHHHHH
Confidence 124677788899999999999999999852 2 2233577788889999888887777766665554
No 244
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=87.79 E-value=36 Score=35.06 Aligned_cols=95 Identities=14% Similarity=0.193 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-----CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhH
Q 009514 373 SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-----ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL 447 (533)
Q Consensus 373 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 447 (533)
+....+-.+++||+...... ..+..|..+|.+ ..+..+..+|.+.+..+..+....+..-+.-
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~---------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~--- 297 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGH---------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPF--- 297 (464)
T ss_pred ccchhHHHHHHHHHcCccHH---------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecc---
Confidence 55666777888888654210 145666666621 1344566788899888887663222222110
Q ss_pred hhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514 448 RAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 448 ~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~ 480 (533)
...-+++.+...++.++..+-.+....+.++.
T Consensus 298 -~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 298 -SPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred -cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 01226677888888766655555555555555
No 245
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=87.28 E-value=31 Score=33.70 Aligned_cols=160 Identities=18% Similarity=0.154 Sum_probs=108.3
Q ss_pred HHHHHhhhCCCChhHHHHHHHHHHHhhc-CCcchHHHHHhhcCchHHHHHHHhccC----Cc--------hhHHHHHHH-
Q 009514 360 ASLLASLICDPEPSVQEQALALVRNLVD-GRINSVEYIFAEDGIILDAVGRQLRIA----SK--------AEIEIQGMY- 425 (533)
Q Consensus 360 ~~~l~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~~~~~~~~L~~~L~~~----~~--------~~v~~~a~~- 425 (533)
+..+.+.|.+....+...++.+|..+.. +.......+++.-+.-.+.+.+++... .+ +.+|...+.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6777888888888888899999999987 555566666665443345555555321 01 277777666
Q ss_pred HHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHh
Q 009514 426 VLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN 505 (533)
Q Consensus 426 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ 505 (533)
.|..+..+++..+..++++ .+.+..+.+.|..+++++-.....++..-...+..-.+.....+.....+..|..
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~------~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQ------KKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHccCCHHHHHHHHHc------CchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence 4555556777778788874 6778888888988778888888888876554333334444555666678899999
Q ss_pred hhcCCCC----cHHHHHHHHHHHH
Q 009514 506 MVNDPCL----DVKLRVKTALEQF 525 (533)
Q Consensus 506 ll~~~~~----~v~~~a~~aL~~~ 525 (533)
+-....+ .+.+.|-.-|..+
T Consensus 212 Ly~~~~~~~~~~~~~~vh~fL~~l 235 (330)
T PF11707_consen 212 LYSRDGEDEKSSVADLVHEFLLAL 235 (330)
T ss_pred HhcccCCcccchHHHHHHHHHHHH
Confidence 8776566 5666555555444
No 246
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=86.96 E-value=16 Score=34.45 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=88.4
Q ss_pred hHHHHHHhcC-CCCchhhhHHHHHHhhhcCCHHHHHHHHHcC-c-HHHHHHhhhcCC--CCchhHHHHHHHHHHhhccch
Q 009514 146 LINNLLELLD-DPGRVGDEASFAFSSLIAEKEDMQKLAFEVN-G-VDKLYNHLQKGS--LHPRRFEGILLALADMCSKLE 220 (533)
Q Consensus 146 ~i~~L~~ll~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~-l~~L~~~L~~~~--~~~~~~~~a~~aL~~l~~~~~ 220 (533)
....+.+++. .+.+-+.-+...+.-++. ++.........+ + ...+..++.... .++..+.-+++++.|+..+ +
T Consensus 64 ~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~ 141 (268)
T PF08324_consen 64 WLILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-P 141 (268)
T ss_dssp HHHHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-C
T ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-C
Confidence 3445555554 344455666666654443 333222222222 1 344444443332 3466788899999998765 4
Q ss_pred hhhHhhhhh-c--hHHHHHHhcCCC---CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhh-c-CCCHHHHHH
Q 009514 221 CCRSRCLSL-Q--VLKLVVDALAHD---SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-D-DTSTAVQVA 292 (533)
Q Consensus 221 ~~~~~~~~~-~--~l~~l~~~L~~~---~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~-~~~~~v~~~ 292 (533)
..+..+... + ++..+....... +..+|.+++.++.|++......+...-.....+..+++.+ . ..|+|+...
T Consensus 142 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 142 PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 555555543 2 233333333333 7899999999999997542221100001223456666633 3 369999999
Q ss_pred HHHHHHHHhcCCch
Q 009514 293 ALGAISNIVVDFTT 306 (533)
Q Consensus 293 a~~aL~nl~~~~~~ 306 (533)
++-|++++......
T Consensus 222 ~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 222 LLVALGTLLSSSDS 235 (268)
T ss_dssp HHHHHHHHHCCSHH
T ss_pred HHHHHHHHhccChh
Confidence 99999999965433
No 247
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=85.43 E-value=39 Score=33.11 Aligned_cols=198 Identities=19% Similarity=0.142 Sum_probs=98.8
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccch
Q 009514 188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAG 267 (533)
Q Consensus 188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~ 267 (533)
+..+..++..+ .++......+.++..-...- ..-....++..+.+-+++..+.+|..+..+++...+...+....
T Consensus 24 ~~~l~~~~~KE-~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 24 VQGLSPLLSKE-SNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred HHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 34455555554 24444455555554332211 12234457888888999988889999999999887611111111
Q ss_pred hhhhcCcHHHHHHhhc----CCCHHHH---HHHHHHHHHHhcC-CchhHH-HHH----HhCcHHH-HH--HhhcC-CCHH
Q 009514 268 SFMNETIVIPLVRLLD----DTSTAVQ---VAALGAISNIVVD-FTTRRS-TFI----RLGGVKL-LV--QLSKS-MDST 330 (533)
Q Consensus 268 ~~~~~~~i~~Lv~lL~----~~~~~v~---~~a~~aL~nl~~~-~~~~~~-~~~----~~~~i~~-L~--~ll~~-~~~~ 330 (533)
-.-..++|.|++.++ ++-+..+ ..++.++..+... ...... ... -.+-=+. +. ++... .+++
T Consensus 99 -~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~~~~ 177 (339)
T PF12074_consen 99 -KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLASEE 177 (339)
T ss_pred -HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccCCHh
Confidence 133467888888884 3322211 1222222211110 000000 000 0000000 00 11111 2233
Q ss_pred HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCC--ChhHHHHHHHHHHHhhcCCcch
Q 009514 331 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDP--EPSVQEQALALVRNLVDGRINS 392 (533)
Q Consensus 331 ~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~ 392 (533)
-..-.++++..+..+......... .....+.++.++.++ .+++|..|..++..+...++..
T Consensus 178 d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 178 DLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred HHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 344455556555443322222222 223345677777777 8999999999999999887753
No 248
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=85.26 E-value=65 Score=35.57 Aligned_cols=124 Identities=17% Similarity=0.238 Sum_probs=80.3
Q ss_pred HHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCC
Q 009514 164 ASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS 243 (533)
Q Consensus 164 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~ 243 (533)
+.-.|++|.-.++...+ ..+|.|++-|..+. ...+|-+.+-+++.+|..- .+...-.+|.+...|.+++
T Consensus 951 ~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~-~~aiRnNiV~am~D~C~~Y-----Tam~d~YiP~I~~~L~Dp~ 1019 (1529)
T KOG0413|consen 951 GVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNT-AHAIRNNIVLAMGDICSSY-----TAMTDRYIPMIAASLCDPS 1019 (1529)
T ss_pred HHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhh-HHHHhcceeeeehhhHHHH-----HHHHHHhhHHHHHHhcCch
Confidence 33455566544444332 35788888887663 4456777777777777421 2333457999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 009514 244 SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVD 303 (533)
Q Consensus 244 ~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~ 303 (533)
+-||.++.-.|.+|-.. +..++. ..=++..+..++ +.+++++.-|-..++.+...
T Consensus 1020 ~iVRrqt~ilL~rLLq~-~~vKw~---G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1020 VIVRRQTIILLARLLQF-GIVKWN---GELFIRFMLALL-DANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred HHHHHHHHHHHHHHHhh-hhhhcc---hhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhh
Confidence 99999999999888543 222221 111233333333 67889999999888887753
No 249
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=85.20 E-value=61 Score=35.22 Aligned_cols=195 Identities=15% Similarity=0.127 Sum_probs=109.3
Q ss_pred HHHHHhhccccccchhhhhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcH-HHHHHhhcCCCH-
Q 009514 253 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGV-KLLVQLSKSMDS- 329 (533)
Q Consensus 253 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i-~~L~~ll~~~~~- 329 (533)
+|+++....+..++. +.+.+++..+...++. ++.+++..+.+.++|++...............- ..+-.++...+.
T Consensus 494 ~l~~~t~~~~~~C~~-~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKE-FLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHH-HHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence 788888877777877 8999999999999973 678899999999999996442221111111111 122233333333
Q ss_pred HHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHH-HH
Q 009514 330 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDA-VG 408 (533)
Q Consensus 330 ~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~-L~ 408 (533)
+.-..+...|..+...+++ . .+. .-+..+...+.......+.......... .+.. +.
T Consensus 573 ersY~~~siLa~ll~~~~~-~----~~~---------------~~r~~~~~~l~e~i~~~~~~~~~~~~~~--~f~~~~~ 630 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEK-T----TEC---------------VFRNSVNELLVEAISRWLTSEIRVINDR--SFFPRIL 630 (699)
T ss_pred hHHHHHHHHHHHHHhCCCc-C----ccc---------------cchHHHHHHHHHHhhccCccceeehhhh--hcchhHH
Confidence 5566777788877664331 0 000 0111111222222111110000111111 2223 55
Q ss_pred HHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-cCChhHHHHHHHHHH
Q 009514 409 RQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVL 477 (533)
Q Consensus 409 ~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~-~~~~~v~~~a~~~L~ 477 (533)
+++..+..+..+.-|+|++.++....++....+.+ .++++.+.+.-. +...+++..+...+.
T Consensus 631 ~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 693 (699)
T KOG3665|consen 631 RILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRE-------SNGFELIENIRVLSEVVDVKEEAVLVIE 693 (699)
T ss_pred HHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHh-------ccchhhhhhcchhHHHHHHHHHHHHHhh
Confidence 66776677889999999999999887775555554 566665555432 223455555554443
No 250
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.77 E-value=9.8 Score=31.92 Aligned_cols=71 Identities=10% Similarity=0.135 Sum_probs=56.5
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHhhc
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~-~~~~v~~~a~~~L~~l~ 480 (533)
++..+.+.|.+ +++.++..|+..|-.+...+......-+. ..+++..|+.++.. .+..|+......|...+
T Consensus 38 a~ral~KRl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~eva------sk~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 38 CLKAIMKRLNH-KDPNVQLRALTLLDACAENCGKRFHQEVA------SRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHh------hHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 67788888887 89999999999999888765544443333 27888999999987 67899999998888766
No 251
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.34 E-value=7.7 Score=32.55 Aligned_cols=95 Identities=17% Similarity=0.183 Sum_probs=71.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHH
Q 009514 284 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 363 (533)
Q Consensus 284 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l 363 (533)
.+|+..-...|..+..= .. .. ..++..|.+-+.+.++.++..|+..|-.+..+.+...+..+.....++.|
T Consensus 15 ~~dw~~il~icD~I~~~--~~-~~------k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL 85 (144)
T cd03568 15 SENWGLILDVCDKVKSD--EN-GA------KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQEL 85 (144)
T ss_pred CcCHHHHHHHHHHHhcC--Cc-cH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHH
Confidence 45666666666666421 11 11 24567777777889999999999999999888887788888888888999
Q ss_pred HhhhCC-CChhHHHHHHHHHHHhhc
Q 009514 364 ASLICD-PEPSVQEQALALVRNLVD 387 (533)
Q Consensus 364 ~~lL~~-~~~~v~~~a~~~L~~l~~ 387 (533)
.+++.. .+..|+..++.++...+.
T Consensus 86 ~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 86 KKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHHH
Confidence 999987 788999999988877653
No 252
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=84.11 E-value=47 Score=32.97 Aligned_cols=158 Identities=17% Similarity=0.166 Sum_probs=90.9
Q ss_pred HHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC------C
Q 009514 297 ISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD-STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC------D 369 (533)
Q Consensus 297 L~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~------~ 369 (533)
+-|++. .+....+.+.+-.+-+-+-+...+ ..-|.+|...+..++... ..-........+..++. +
T Consensus 194 ~Pnl~~--~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~-----~~~v~~i~~~~i~~~l~~y~~~~~ 266 (370)
T PF08506_consen 194 FPNLCL--REEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKF-----EKQVTSILMQYIQQLLQQYASNPS 266 (370)
T ss_dssp HHHHS----HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred cCccCC--CHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHhhCCc
Confidence 335542 344456777777777776666544 345778888888886532 12222222233344443 4
Q ss_pred CChhHHHHHHHHHHHhhcCCcc------------hHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhh
Q 009514 370 PEPSVQEQALALVRNLVDGRIN------------SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESH 437 (533)
Q Consensus 370 ~~~~v~~~a~~~L~~l~~~~~~------------~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 437 (533)
.++.-+..|+.++..++..... .+..++... +++-|. -..+..|-++..|++.+..+-..-+
T Consensus 267 ~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~--v~peL~--~~~~~~piLka~aik~~~~Fr~~l~-- 340 (370)
T PF08506_consen 267 NNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQH--VLPELQ--PDVNSHPILKADAIKFLYTFRNQLP-- 340 (370)
T ss_dssp T-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHH--TCHHHH---SS-S-HHHHHHHHHHHHHHGGGS---
T ss_pred ccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHH--hHHHhc--ccCCCCcchHHHHHHHHHHHHhhCC--
Confidence 5778888899999999855311 122333322 233332 0112456788899998887765432
Q ss_pred HHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHH
Q 009514 438 KEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476 (533)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L 476 (533)
.+.+ .+++|.++..|++++.-|+..|+.+|
T Consensus 341 ~~~l---------~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 341 KEQL---------LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHH---------HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHH---------HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 2222 36789999999999999999998775
No 253
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=83.76 E-value=71 Score=34.77 Aligned_cols=181 Identities=17% Similarity=0.174 Sum_probs=103.5
Q ss_pred HHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCCh-h
Q 009514 296 AISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP-S 373 (533)
Q Consensus 296 aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~-~ 373 (533)
+|.+.....+...+.+++.|++..+...++. .+.+++..++..+.|++............+.-....+..++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 4557777777777889999999999998885 4577899999999999864321111111221111233334433333 5
Q ss_pred HHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhh
Q 009514 374 VQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKA 453 (533)
Q Consensus 374 v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 453 (533)
.--.+++.|..+....++..... ..+++.+--..++..+... ....+.. .-+
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~------------------~r~~~~~~l~e~i~~~~~~---~~~~~~~-------~~f 625 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECV------------------FRNSVNELLVEAISRWLTS---EIRVIND-------RSF 625 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCcccc------------------chHHHHHHHHHHhhccCcc---ceeehhh-------hhc
Confidence 66667777777665533211100 1122222222333333321 1222222 112
Q ss_pred HHHHHHhhc-cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc
Q 009514 454 QSCIIKFLQ-SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN 508 (533)
Q Consensus 454 ~~~lv~~L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~ 508 (533)
.|.+-.++. +..+....-|.|++.++.. ..++..+...+.|.++.+.++-.
T Consensus 626 ~~~~~~il~~s~~~g~~lWal~ti~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 626 FPRILRILRLSKSDGSQLWALWTIKNVLE----QNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred chhHHHHhcccCCCchHHHHHHHHHHHHH----cChhhhhhhHhccchhhhhhcch
Confidence 232444454 4456788999999999995 33446677888998888887753
No 254
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=83.50 E-value=21 Score=31.97 Aligned_cols=140 Identities=11% Similarity=0.133 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHh
Q 009514 291 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-----MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS 365 (533)
Q Consensus 291 ~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-----~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ 365 (533)
..|...|.-++. .++.+..+.++..---+..++.. +.+.+|..++..++.+..+.+++....+.....+|..++
T Consensus 118 cnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 444555555554 44555555554422222344332 336689999999999999988888888888899999999
Q ss_pred hhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcC------chHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514 366 LICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDG------IILDAVGRQLRIASKAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 366 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~------~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 432 (533)
+++.++.--+.-++.++..+..++. ..+++.+.-. .++.-++..+-+.+......+++++-..++.
T Consensus 197 Ime~gSElSktvaifI~qkil~dDv-GLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 197 IMELGSELSKTVAIFIFQKILGDDV-GLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 9999888888888888887776543 3344332110 0223333333333555555666666555553
No 255
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=83.06 E-value=14 Score=30.56 Aligned_cols=71 Identities=10% Similarity=0.198 Sum_probs=54.7
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc---CChhHHHHHHHHHHhh
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS---NDSRLRTAAVWAVLNL 479 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~---~~~~v~~~a~~~L~~l 479 (533)
++..|.+.|.+ +++.++..|+.+|-.+...+.......+. ...++..++.++.. .+..|+..+...+...
T Consensus 38 a~raL~krl~~-~n~~vql~AL~lLd~~vkNcg~~f~~~i~------s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W 110 (133)
T cd03561 38 AARAIRKKIKY-GNPHVQLLALTLLELLVKNCGKPFHLQVA------DKEFLLELVKIAKNSPKYDPKVREKALELILAW 110 (133)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhCChHHHHHHh------hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 67788888888 89999999999999888766544444443 25777788888875 4678999998888776
Q ss_pred c
Q 009514 480 T 480 (533)
Q Consensus 480 ~ 480 (533)
+
T Consensus 111 ~ 111 (133)
T cd03561 111 S 111 (133)
T ss_pred H
Confidence 6
No 256
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=82.06 E-value=63 Score=32.96 Aligned_cols=216 Identities=18% Similarity=0.142 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHhcCChhhhhhhccccCcccHH-HHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHH
Q 009514 72 IQRDASLESIATIFKNNPEVVSQFVGPDTGRTLS-CIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNL 150 (533)
Q Consensus 72 ~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~-~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L 150 (533)
+.|..|..+|+.++..-+... -..... .++..+++...--|..|+..+...+........... -....+.|
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~-------~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~-~~~l~~~L 173 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESS-------LQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPP-PQALSPRL 173 (441)
T ss_pred HHHHHHHHHHHHHHHhcccch-------HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCcc-HHHHHHHH
Confidence 678899999999875532221 123344 377889999999999999999998876543221111 23567778
Q ss_pred HHhcCCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHH-----HHHHhhhcCC---CCchhHHHHHHHHHHh----hc
Q 009514 151 LELLDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVD-----KLYNHLQKGS---LHPRRFEGILLALADM----CS 217 (533)
Q Consensus 151 ~~ll~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~-----~L~~~L~~~~---~~~~~~~~a~~aL~~l----~~ 217 (533)
...|.++ ...-.+....+..+-.+...+-..+.+.|.++ .|-....... .+.-..+.|-...... ..
T Consensus 174 ~~~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~ 253 (441)
T PF12054_consen 174 LEILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKK 253 (441)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHH
Confidence 8888733 22233444555666555555555555666521 1111111110 0011112222221111 10
Q ss_pred ---cchhh--hHhhhh-hchHHHHHHhcC----CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCC
Q 009514 218 ---KLECC--RSRCLS-LQVLKLVVDALA----HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTS 286 (533)
Q Consensus 218 ---~~~~~--~~~~~~-~~~l~~l~~~L~----~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~ 286 (533)
..... .+.+-+ ..-+..-++..+ .-+..|+...+.++..+..-++. -..+|.+|+.-++ +++
T Consensus 254 ~l~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~~~~V~Aa~A~A~v~l~~lP~K-------LnPiIrpLMdSIK~Een 326 (441)
T PF12054_consen 254 SLSPSQKLSALQALEDRRQRLQAAIEEAKEVQTSRDVRVLAAAASALVALGGLPKK-------LNPIIRPLMDSIKREEN 326 (441)
T ss_pred hcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-------ccHHHHHHHHHhhcccc
Confidence 00000 011111 011222222222 23456777777777777543221 2367888888887 578
Q ss_pred HHHHHHHHHHHHHHhc
Q 009514 287 TAVQVAALGAISNIVV 302 (533)
Q Consensus 287 ~~v~~~a~~aL~nl~~ 302 (533)
..+|..++.+|..|..
T Consensus 327 ~~LQ~rsA~slA~Li~ 342 (441)
T PF12054_consen 327 ELLQQRSAESLARLIQ 342 (441)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988774
No 257
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.00 E-value=75 Score=33.80 Aligned_cols=150 Identities=17% Similarity=0.215 Sum_probs=96.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh----HHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchH
Q 009514 318 KLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC----KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV 393 (533)
Q Consensus 318 ~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~----~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 393 (533)
|.|.+-++..|..+|.+|+..+-++.--.+|+. .+.+++. -...+-.+|+++-+.|+..|..-+.....--.+.+
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~i 255 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMI 255 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 344555777899999999999998864444433 3334433 35678889999999999888766655442200000
Q ss_pred -HHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHH
Q 009514 394 -EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAA 472 (533)
Q Consensus 394 -~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a 472 (533)
..++.+ ++..+..-+..+...+|+.+....|..++... ....+++ -++|.+-..|.+....||.++
T Consensus 256 P~~i~~~---ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le--------~~Lpal~~~l~D~se~VRvA~ 322 (1005)
T KOG1949|consen 256 PPTILID---LLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLE--------QLLPALRYSLHDNSEKVRVAF 322 (1005)
T ss_pred CHHHHHH---HHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHH--------HHHHhcchhhhccchhHHHHH
Confidence 001100 22333333344455688888877777777543 2445664 455788888889999999999
Q ss_pred HHHHHhhcC
Q 009514 473 VWAVLNLTC 481 (533)
Q Consensus 473 ~~~L~~l~~ 481 (533)
...|..+-.
T Consensus 323 vd~ll~ik~ 331 (1005)
T KOG1949|consen 323 VDMLLKIKA 331 (1005)
T ss_pred HHHHHHHHh
Confidence 999887763
No 258
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=81.88 E-value=10 Score=31.53 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=69.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHH
Q 009514 284 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 363 (533)
Q Consensus 284 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l 363 (533)
++|+..-...|..+.. .+... ..++..+.+-+++.++.+...|+..|-.+..+.+...+..+.....+..+
T Consensus 16 ~~dw~~ileicD~In~---~~~~~------k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el 86 (139)
T cd03567 16 EEDWEAIQAFCEQINK---EPEGP------QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNEL 86 (139)
T ss_pred CCCHHHHHHHHHHHHc---CCccH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHH
Confidence 5566666666666632 11111 24567778888899999999999999988887777778888877778889
Q ss_pred HhhhCC------CChhHHHHHHHHHHHhh
Q 009514 364 ASLICD------PEPSVQEQALALVRNLV 386 (533)
Q Consensus 364 ~~lL~~------~~~~v~~~a~~~L~~l~ 386 (533)
++++.. .+..|+..++.++..-.
T Consensus 87 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 87 IKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 998853 56889988887776654
No 259
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=81.41 E-value=5.5 Score=36.09 Aligned_cols=87 Identities=22% Similarity=0.257 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHhhcCCcchHHHHHhhcC-----chHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhH
Q 009514 373 SVQEQALALVRNLVDGRINSVEYIFAEDG-----IILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL 447 (533)
Q Consensus 373 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~~-----~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 447 (533)
.-|..|+.+|.+++-.+. +++-++..+. .++..|.++|....++..++-|+-.|.+++.+++.....+-.
T Consensus 139 SPqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~---- 213 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAM---- 213 (257)
T ss_pred CHHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHH----
Confidence 457788899998885432 2333333221 166778888887677888999999999999988765544443
Q ss_pred hhhhhhHHHHHHhhccCCh
Q 009514 448 RAENKAQSCIIKFLQSNDS 466 (533)
Q Consensus 448 ~~~~~~~~~lv~~L~~~~~ 466 (533)
..+.+..|+.++.+.+.
T Consensus 214 --q~~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 214 --QKPCISHLIAFIEDAEQ 230 (257)
T ss_pred --hhchHHHHHHHHHHHHH
Confidence 26778888988876544
No 260
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=81.25 E-value=11 Score=31.52 Aligned_cols=72 Identities=18% Similarity=0.179 Sum_probs=59.7
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC-CCChhHHHHHHHHHHHhh
Q 009514 315 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALVRNLV 386 (533)
Q Consensus 315 ~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L~~l~ 386 (533)
.++..|.+-++++++.++..|+..|-.+..+.+......+.+...++.+.+++. ..++.|+..++.++..-+
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 467778887888999999999999998888777767778888888888999886 567889999998887665
No 261
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.99 E-value=88 Score=33.94 Aligned_cols=164 Identities=15% Similarity=0.183 Sum_probs=87.6
Q ss_pred HHHHHhhcHHHHHhhhCCCChhHH-HHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCC--chhHHHHHHHHHH
Q 009514 352 EEIFMELTASLLASLICDPEPSVQ-EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS--KAEIEIQGMYVLG 428 (533)
Q Consensus 352 ~~i~~~~~~~~l~~lL~~~~~~v~-~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~--~~~v~~~a~~~L~ 428 (533)
+++.+...++.+-+-|+.+|.+.| ..|+..++.|+..-+..+-.++... ++.+..-....| ++.-+..+.+...
T Consensus 355 eElFED~pleYiRRDlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~---v~~~l~~y~~nPS~nWk~kd~aiyL~t 431 (960)
T KOG1992|consen 355 EELFEDNPLEYIRRDLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSE---VQRLLDQYSKNPSGNWKKKDRAIYLVT 431 (960)
T ss_pred HHHhccCHHHHHHHhcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHH---HHHHHHHhccCCCccccccchhhhhhH
Confidence 455566667777788887776654 5677888888876544443444332 222222222223 4455666777777
Q ss_pred HhccCChhhHHHHHH--HhhHhhhhhhHHHHHHhhcc----CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHH
Q 009514 429 NVATGKESHKEAVMD--QLLLRAENKAQSCIIKFLQS----NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSH 502 (533)
Q Consensus 429 ~l~~~~~~~~~~~~~--~~~~~~~~~~~~~lv~~L~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~ 502 (533)
.++......+..+.. .+.+..+. +...+..-|.+ ..+-++..+..-+..+- +.-.+++. ...+|.
T Consensus 432 alaik~~t~~~Gvtstn~lvdv~~F-f~~~ilp~L~s~~vn~~pilka~aIKy~~~FR---~ql~~~~l-----m~~~p~ 502 (960)
T KOG1992|consen 432 ALAIKGQTAKHGVTSTNELVDVVDF-FANQILPDLLSPNVNEFPILKADAIKYIYTFR---NQLGKEHL-----MALLPR 502 (960)
T ss_pred HHHhhcchhhcceeeccccccHHHH-HHHHhhHHhccCccccccchhhcccceeeeec---ccCChHHH-----HHHHHH
Confidence 776532211111110 00000001 11222223333 34556666655544333 11223332 335899
Q ss_pred HHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 503 VKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 503 L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
+.+.++.++.-|-..|+.++.++.-
T Consensus 503 li~~L~a~s~vvhsYAA~aiEkil~ 527 (960)
T KOG1992|consen 503 LIRFLEAESRVVHSYAAIAIEKLLT 527 (960)
T ss_pred HHHhccCcchHHHHHHHHHHHhccc
Confidence 9999998888888999999998753
No 262
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.75 E-value=26 Score=36.13 Aligned_cols=105 Identities=15% Similarity=0.130 Sum_probs=73.1
Q ss_pred hhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 009514 228 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR 307 (533)
Q Consensus 228 ~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 307 (533)
-.|.+.+++..+.+++..||...+..|..++......-. ..-.+.++.|.+-+-+..+.|+.+|+.+|+.+-....+
T Consensus 89 V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe--~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n- 165 (885)
T COG5218 89 VAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE--VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELN- 165 (885)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH--HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC-
Confidence 347888899999999999999999999998876443222 23456677777777788999999999999887632211
Q ss_pred HHHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHH
Q 009514 308 RSTFIRLGGVKLLVQLSK-SMDSTIRLNALRAL 339 (533)
Q Consensus 308 ~~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL 339 (533)
-+ ......|..+++ +++.++|..|+.-+
T Consensus 166 ee----n~~~n~l~~~vqnDPS~EVRr~allni 194 (885)
T COG5218 166 EE----NRIVNLLKDIVQNDPSDEVRRLALLNI 194 (885)
T ss_pred hH----HHHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence 11 122345555554 46677888775444
No 263
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.27 E-value=1.1e+02 Score=34.44 Aligned_cols=287 Identities=13% Similarity=0.084 Sum_probs=144.2
Q ss_pred cchHHHHh-hhcCCCcchhHHHHHHHHHhhc-CchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhh
Q 009514 17 ENMEFLLS-LLNNESENVSGLGASIISHSCK-TSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVS 93 (533)
Q Consensus 17 ~~i~~L~~-lL~~~~~~v~~~a~~~l~~~~~-~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~ 93 (533)
++++.|-+ +|++++++.|......+.++-. .++|-...-+.--+|.++--+.+ +..+|.+-++.|-.-... ..
T Consensus 466 eAvqmLqdiFLkaenkdlqaeVlnrmfkIftshpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAVtv----vn 541 (2799)
T KOG1788|consen 466 EAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSHPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAVTV----VN 541 (2799)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHHHHhccChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHHhh----hc
Confidence 45566655 3567889998888888887543 45555555556667777776776 557777777666442110 01
Q ss_pred hhccccCcccHHHHHHHHhcCCh-hhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC----CchhhhHHHHH
Q 009514 94 QFVGPDTGRTLSCIIEIVKDRFA-RTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP----GRVGDEASFAF 168 (533)
Q Consensus 94 ~~~~~~~~~~i~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~----~~~~~~a~~~L 168 (533)
.+. ..-+-.+.-+++.+-. .....-+.....+..... ..++.+.+-|.+..|-..++.. .+-+....
T Consensus 542 cvP----eqELlSLCvLLqqpIssalkhtIlsffvKLIsfDq-qyKkvlREVGvLevLqddlkqhkll~gpdqysgv--- 613 (2799)
T KOG1788|consen 542 CVP----EQELLSLCVLLQQPISSALKHTILSFFVKLISFDQ-QYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGV--- 613 (2799)
T ss_pred cCc----HHHHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHH-HHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhH---
Confidence 110 1123344555554322 222223333333333221 2456666778888887766521 01111100
Q ss_pred HhhhcC---CHHHHHHHHHcCcH---HHHHHhhhcCCCCchhHH------HHHHHHHHhhccchhhhHhhhhhchHHHHH
Q 009514 169 SSLIAE---KEDMQKLAFEVNGV---DKLYNHLQKGSLHPRRFE------GILLALADMCSKLECCRSRCLSLQVLKLVV 236 (533)
Q Consensus 169 ~~l~~~---~~~~~~~~~~~~~l---~~L~~~L~~~~~~~~~~~------~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~ 236 (533)
...... ++..++..-....+ |++.+ +++....+.+ ..-.+|..+..+++++.+.+.++.++..++
T Consensus 614 sehydrnpss~sf~~~ld~~daiisspklme---SgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklil 690 (2799)
T KOG1788|consen 614 SEHYDRNPSSPSFKQHLDSQDAIISSPKLME---SGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLIL 690 (2799)
T ss_pred HHHhhcCCCCchhhhccccccceeecchhhc---ccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEE
Confidence 011111 11111111000111 11111 1100000111 112345556667778888888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC--------C----HHHHHHHHHHHHHHhcCC
Q 009514 237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT--------S----TAVQVAALGAISNIVVDF 304 (533)
Q Consensus 237 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~--------~----~~v~~~a~~aL~nl~~~~ 304 (533)
.++- +.+-|....+.+..+-...+. -+....+-.+|..|+++ + -.......+++..+....
T Consensus 691 pfli--ndehRSslLrivscLitvdpk-----qvhhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvn 763 (2799)
T KOG1788|consen 691 PFLI--NDEHRSSLLRIVSCLITVDPK-----QVHHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVN 763 (2799)
T ss_pred Eeee--chHHHHHHHHHHHHHhccCcc-----cccHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccC
Confidence 7773 333344444444444322111 13345566788888763 1 234455567777777555
Q ss_pred chhHHHHHHhCcHHHHHHhhc
Q 009514 305 TTRRSTFIRLGGVKLLVQLSK 325 (533)
Q Consensus 305 ~~~~~~~~~~~~i~~L~~ll~ 325 (533)
...+..+.++++...|...++
T Consensus 764 gsaqrvFgeatGFslLlttLh 784 (2799)
T KOG1788|consen 764 GSAQRVFGEATGFSLLLTTLH 784 (2799)
T ss_pred chheeehhccccHHHHHHHHH
Confidence 556667778888887776654
No 264
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=80.24 E-value=27 Score=33.16 Aligned_cols=114 Identities=16% Similarity=0.162 Sum_probs=65.2
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHH----HHHhhc--------CCCHHHHHHHHHHHH
Q 009514 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIP----LVRLLD--------DTSTAVQVAALGAIS 298 (533)
Q Consensus 231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~----Lv~lL~--------~~~~~v~~~a~~aL~ 298 (533)
++|.++.++++.++.+|..++.+|..+-...+......+...|..+. |...+. ++...+...+..++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999976543322111334454433 333443 345667777777777
Q ss_pred HHhcC-----Cch---hHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514 299 NIVVD-----FTT---RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 344 (533)
Q Consensus 299 nl~~~-----~~~---~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~ 344 (533)
.++.- ... ....++..|++..+......+++.++...+..+..+..
T Consensus 200 ~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~ 253 (282)
T PF10521_consen 200 SLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIID 253 (282)
T ss_pred HHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHH
Confidence 77431 111 11223333333332222222346666666666655543
No 265
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=79.86 E-value=15 Score=30.30 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=67.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHH
Q 009514 284 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 363 (533)
Q Consensus 284 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l 363 (533)
++|+..-...|..+..- +... ..++..|.+-++++++.++..|+..|-.+..+.+......+.....+..+
T Consensus 15 ~~D~~~il~icd~I~~~----~~~~-----k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l 85 (133)
T cd03561 15 EPDWALNLELCDLINLK----PNGP-----KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLEL 85 (133)
T ss_pred CccHHHHHHHHHHHhCC----CCCH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHH
Confidence 45666555555555321 1111 24567788888889999999999999999887776677777775666668
Q ss_pred HhhhCC---CChhHHHHHHHHHHHhhc
Q 009514 364 ASLICD---PEPSVQEQALALVRNLVD 387 (533)
Q Consensus 364 ~~lL~~---~~~~v~~~a~~~L~~l~~ 387 (533)
++++.. .+..|+..++.++.+...
T Consensus 86 ~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 86 VKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 888864 478899999988877654
No 266
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=78.73 E-value=16 Score=31.39 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=78.5
Q ss_pred cHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccc
Q 009514 187 GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA 266 (533)
Q Consensus 187 ~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~ 266 (533)
.++.|.++|+.+ .++.+|..+++.|+-+..-|+...+.+....- .- .-...+..... ..+.+.... ....
T Consensus 11 LL~~L~~iLk~e-~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~--~~~~~~~~~~~---~~l~~~~~~--~~~e 80 (160)
T PF11865_consen 11 LLDILLNILKTE-QSQSIRREALRVLGILGALDPYKHKSIQKSLD--SK--SSENSNDESTD---ISLPMMGIS--PSSE 80 (160)
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHhhhccccCcHHHhcccccCC--cc--ccccccccchh---hHHhhccCC--CchH
Confidence 356788888877 56889999999999998766654332221100 00 00001111111 111111110 0111
Q ss_pred hhhhhcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514 267 GSFMNETIVIPLVRLLDDTST-AVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 343 (533)
Q Consensus 267 ~~~~~~~~i~~Lv~lL~~~~~-~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~ 343 (533)
. +.-.-.+..|+.+|+++.- .-...+..++.++........-..+ ..++|.+++.++..++..++.-++-|+.+.
T Consensus 81 e-~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 81 E-YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred H-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 2 3445567788888886533 3344566666666533222222222 357888888888776677777766666654
No 267
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=78.62 E-value=18 Score=30.96 Aligned_cols=144 Identities=10% Similarity=0.132 Sum_probs=72.9
Q ss_pred chHHHHHHhcCCC-CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514 230 QVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR 308 (533)
Q Consensus 230 ~~l~~l~~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 308 (533)
..++.+.++|+.+ ++.+|..+.++|+.+..-++...+. +. +..+.-. -.+.+......... +. +.....
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~-~~--~~~~~~~--~~~~~~~~~~~~l~---~~--~~~~~~ 79 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKS-IQ--KSLDSKS--SENSNDESTDISLP---MM--GISPSS 79 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhc-cc--ccCCccc--cccccccchhhHHh---hc--cCCCch
Confidence 3577788888755 6899999999999996553432221 11 0000000 00111111111111 11 111122
Q ss_pred HHHHHhCcHHHHHHhhcCCCH-HHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHh
Q 009514 309 STFIRLGGVKLLVQLSKSMDS-TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 385 (533)
Q Consensus 309 ~~~~~~~~i~~L~~ll~~~~~-~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l 385 (533)
+...-.-++..|++.++++.- .-+..++.++.++....+..+ .-.=...++.+++.++..+...++..+.-|+.+
T Consensus 80 ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c--v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 80 EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC--VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc--hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 233334567888888887653 334456777777764333222 111223466677777655556665555444443
No 268
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=78.60 E-value=24 Score=29.48 Aligned_cols=71 Identities=7% Similarity=0.181 Sum_probs=54.6
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHhhc
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~-~~~~~v~~~a~~~L~~l~ 480 (533)
++..+.+.|.+ +++.++..|+..|-.+...+.......+. ..+++..++.++. ..+..|+..+...+...+
T Consensus 42 a~ral~krl~~-~n~~vql~AL~LLe~~vkNCG~~fh~eva------s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 42 AMRALKKRLLS-KNPNVQLYALLLLESCVKNCGTHFHDEVA------SREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHcC-CChHHHHHHHHHHHHHHHHCCHHHHHHHh------hHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 67788888888 89999999999998888754433443333 2788899999887 466789999988887766
No 269
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=76.53 E-value=43 Score=33.36 Aligned_cols=123 Identities=12% Similarity=0.146 Sum_probs=82.8
Q ss_pred HHHHHHhhhcCC-CCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC-C---CCHHHHHHHHHHHHHHhhccc
Q 009514 188 VDKLYNHLQKGS-LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-H---DSSDVRSAACMCLRSVSRSIK 262 (533)
Q Consensus 188 l~~L~~~L~~~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~-~---~~~~v~~~a~~~L~~ls~~~~ 262 (533)
+..|..++.+.. .-+.+-..|+..+..+..++|..-..+.+.|+.+.+++.+. . ++.++....-.+|..++-+..
T Consensus 108 ~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~ 187 (379)
T PF06025_consen 108 LSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNR 187 (379)
T ss_pred HHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHH
Confidence 455666665542 22456778888999999888888888999999999999887 4 356777777788888887743
Q ss_pred cccchhhhhcCcHHHHHHhhcCCCH-------HHHHHHHHHHHHHhcCCchhHHHHH
Q 009514 263 NLSAGSFMNETIVIPLVRLLDDTST-------AVQVAALGAISNIVVDFTTRRSTFI 312 (533)
Q Consensus 263 ~~~~~~~~~~~~i~~Lv~lL~~~~~-------~v~~~a~~aL~nl~~~~~~~~~~~~ 312 (533)
... . +.+.+.++.+++++.+++- +....--.++-.|.++++..+..++
T Consensus 188 Gl~-~-~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~ 242 (379)
T PF06025_consen 188 GLE-K-VKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDII 242 (379)
T ss_pred HHH-H-HHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHH
Confidence 332 3 6778999999998865421 2223333344445555555554444
No 270
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=76.21 E-value=77 Score=30.58 Aligned_cols=157 Identities=16% Similarity=0.152 Sum_probs=92.1
Q ss_pred cHHHHHHhh-cC---CCHHHHHHHHHHHHHHhcCCchhHHHHHHh--------C---cHHHHHHhhc------CCCHHHH
Q 009514 274 IVIPLVRLL-DD---TSTAVQVAALGAISNIVVDFTTRRSTFIRL--------G---GVKLLVQLSK------SMDSTIR 332 (533)
Q Consensus 274 ~i~~Lv~lL-~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~--------~---~i~~L~~ll~------~~~~~~~ 332 (533)
++..|+.++ .. ..-++|.+|+.++.....++.+.+..+++. + ....++..+- +.|+.-.
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~ 114 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRC 114 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHH
Confidence 344455543 22 356899999999999998888877766642 1 1112333333 3355556
Q ss_pred HHHHHHHHHhhccCChHhHHHHHHh--h----------cHHHHHhhhC-----CCChhHHHHHHHHHHHhhcCCcchHHH
Q 009514 333 LNALRALRNLIFLAEDKCKEEIFME--L----------TASLLASLIC-----DPEPSVQEQALALVRNLVDGRINSVEY 395 (533)
Q Consensus 333 ~~al~aL~~l~~~~~~~~~~~i~~~--~----------~~~~l~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~ 395 (533)
..|..+|.++..+ +++.|+...+- + .++.+..+|. +.++.++..-+.+|..-...++..++.
T Consensus 115 wfAa~il~hll~d-n~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~ 193 (312)
T PF04869_consen 115 WFAAVILMHLLRD-NPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVND 193 (312)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 6788889998874 45667665432 1 3455555442 446777777777788778888989999
Q ss_pred HHhhcCchHHHHHHHhccCC--chhHHHHHHHHHHHhcc
Q 009514 396 IFAEDGIILDAVGRQLRIAS--KAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 396 i~~~~~~~~~~L~~~L~~~~--~~~v~~~a~~~L~~l~~ 432 (533)
++.+++ .++.|+......+ +.-|+--++..|+-+..
T Consensus 194 FL~~~s-~l~~Li~~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 194 FLSEGS-NLQSLIEFSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHCSTT-HHHHHHHHHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HHcCcc-hHHHHHHHhhcCCCCcchHHHHHHHHHHHHHH
Confidence 999876 5666666543323 33455555555554443
No 271
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=74.41 E-value=95 Score=30.78 Aligned_cols=155 Identities=19% Similarity=0.168 Sum_probs=89.4
Q ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc----------CCCHHHHHHHHHHHHHH
Q 009514 232 LKLVVDALAHDS-SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD----------DTSTAVQVAALGAISNI 300 (533)
Q Consensus 232 l~~l~~~L~~~~-~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~----------~~~~~v~~~a~~aL~nl 300 (533)
-..+.+.|..+- +.-+..+...++.|++....+ .. +.....+..|..+.+ .++..+...+..+|+|+
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L-~~-~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNl 124 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGL-EP-LTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNL 124 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhcccccc-cc-ccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHH
Confidence 344555665553 455667778888888873222 22 333444555555442 12568899999999999
Q ss_pred hcCCchhHHHHHHhCcHHHHHHhhcCC----C-HHHHHHHHHHHHHhhccCChHhHHH-HHHhhcHHHHHhhhCCC----
Q 009514 301 VVDFTTRRSTFIRLGGVKLLVQLSKSM----D-STIRLNALRALRNLIFLAEDKCKEE-IFMELTASLLASLICDP---- 370 (533)
Q Consensus 301 ~~~~~~~~~~~~~~~~i~~L~~ll~~~----~-~~~~~~al~aL~~l~~~~~~~~~~~-i~~~~~~~~l~~lL~~~---- 370 (533)
...++..+....+......+.+.+... . ..+...=++.|.-+. ...++.|.+ +.+.+|++.+.+.+.++
T Consensus 125 vf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLfllt-ale~~~Rsql~~~l~Gl~~lt~~led~lgid 203 (532)
T KOG4464|consen 125 VFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLT-ALETDHRSQLIAELLGLELLTNWLEDKLGID 203 (532)
T ss_pred HhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHH-HhhHHHHHHHHHHhcccHHHHHHhhccccCC
Confidence 998888887777776666666544321 1 112222223332222 123445544 45677888888888642
Q ss_pred -----------ChhHHHHHHHHHHHhhcCC
Q 009514 371 -----------EPSVQEQALALVRNLVDGR 389 (533)
Q Consensus 371 -----------~~~v~~~a~~~L~~l~~~~ 389 (533)
+.+.-..++.++.|++...
T Consensus 204 se~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 204 SEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 1133345666667777554
No 272
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=73.86 E-value=22 Score=29.29 Aligned_cols=72 Identities=22% Similarity=0.220 Sum_probs=57.1
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCC--hhHHHHHHHHHHHhh
Q 009514 315 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE--PSVQEQALALVRNLV 386 (533)
Q Consensus 315 ~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~--~~v~~~a~~~L~~l~ 386 (533)
.++..|.+-++++++.++..|+..|-.+..+.+......+.....++.|.+++.++. +.|+..++.++..-.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 456677777888999999999999999988777777778888878889999887543 338888887776654
No 273
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=73.80 E-value=14 Score=34.14 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=49.1
Q ss_pred ccccchHHHHhhhcCCCcc--------hhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC---ChHHHHHHHHHHH
Q 009514 14 LQEENMEFLLSLLNNESEN--------VSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIA 82 (533)
Q Consensus 14 ~~~~~i~~L~~lL~~~~~~--------v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~v~~~al~aL~ 82 (533)
-+..+.++++++++.+++. +-+.-..+++.++ .|-++.|..++.+ ..=+|.+|+.+|.
T Consensus 70 re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~-----------~G~~~~L~~li~~~~~~~yvR~aa~~aL~ 138 (249)
T PF06685_consen 70 REERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG-----------DGDIEPLKELIEDPDADEYVRMAAISALA 138 (249)
T ss_pred hhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh-----------CCCHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3567889999999866542 2333444444444 6777888888876 3468999999999
Q ss_pred HHhcCChhhhhhh
Q 009514 83 TIFKNNPEVVSQF 95 (533)
Q Consensus 83 ~l~~~~~~~~~~~ 95 (533)
.+....+..+..+
T Consensus 139 ~l~~~~~~~Re~v 151 (249)
T PF06685_consen 139 FLVHEGPISREEV 151 (249)
T ss_pred HHHHcCCCCHHHH
Confidence 9987776654433
No 274
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=73.33 E-value=15 Score=32.38 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=56.3
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhh-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 009514 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMN-ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT 306 (533)
Q Consensus 231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~-~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~ 306 (533)
.++.++++..+++..++..|...+..+.+. + +.. ..++|.|+.+..++++.++..|...+..+...++.
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~q------G-LvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s 78 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQ------G-LVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHES 78 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhc------C-CCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHH
Confidence 577888888899999999999999877653 1 222 35789999999999999999999999998865554
No 275
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=73.04 E-value=36 Score=28.08 Aligned_cols=71 Identities=6% Similarity=0.114 Sum_probs=52.9
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCC--hhHHHHHHHHHHhhc
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND--SRLRTAAVWAVLNLT 480 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~--~~v~~~a~~~L~~l~ 480 (533)
++..+.+.|.+ +++.++..|+.+|-.+...+.......+. ..+++..|+.++.++. +.|+..+...+...+
T Consensus 38 a~r~l~krl~~-~n~~v~l~AL~lLe~~vkNcg~~f~~ev~------s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 38 AVRLLKKRLNN-KNPHVALLALTLLDACVKNCGSKFHLEVA------SKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHH------hHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 67778888887 99999999999998888765444443333 2678889999887643 338888888877665
No 276
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=71.84 E-value=28 Score=36.20 Aligned_cols=100 Identities=19% Similarity=0.178 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHH--HHHHhCcHHH
Q 009514 242 DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS--TFIRLGGVKL 319 (533)
Q Consensus 242 ~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~--~~~~~~~i~~ 319 (533)
.+...|..+-.+|+.+++..+..-. .+-+.+.-|+.-|.+++++++.+.-.||..++..+..... ..........
T Consensus 386 ~~~~lR~~aYe~lG~L~~~~p~l~~---~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~ 462 (501)
T PF13001_consen 386 EDIELRSLAYETLGLLAKRAPSLFS---KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLEL 462 (501)
T ss_pred ccHHHHHHHHHHHHHHHccCccccc---ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 4678999999999999987554321 3567788899988889999999999999999865543322 0111111222
Q ss_pred HH-HhhcCCCHHHHHHHHHHHHHhhc
Q 009514 320 LV-QLSKSMDSTIRLNALRALRNLIF 344 (533)
Q Consensus 320 L~-~ll~~~~~~~~~~al~aL~~l~~ 344 (533)
+. ....+....+|..|+.-...+..
T Consensus 463 l~~~~~~~~~~~~R~~avk~an~~fp 488 (501)
T PF13001_consen 463 LLLSYIQSEVRSCRYAAVKYANACFP 488 (501)
T ss_pred HHHhhccchhHHHHHHHHHHHHHhCC
Confidence 22 22233445677777766655543
No 277
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=71.58 E-value=1.2e+02 Score=30.76 Aligned_cols=131 Identities=15% Similarity=0.154 Sum_probs=83.5
Q ss_pred HHHhcC-CCCchhhhHHHHHHhhhcCCHH---HHHHHHHcCcHHHHHHhhhcCCC-----CchhHHHHHHHHHHhhccch
Q 009514 150 LLELLD-DPGRVGDEASFAFSSLIAEKED---MQKLAFEVNGVDKLYNHLQKGSL-----HPRRFEGILLALADMCSKLE 220 (533)
Q Consensus 150 L~~ll~-~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~~~l~~L~~~L~~~~~-----~~~~~~~a~~aL~~l~~~~~ 220 (533)
+..+.+ .+++-+..+....+++.++.+- .++.+++.=|.+.+-++|...+. +...+.-++..|+.+|+..
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p- 94 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP- 94 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh-
Confidence 445555 3455567777888888766543 34557787777777787765432 2234666777888888653
Q ss_pred hhhHhhhhhchHHHHHHhcCCC-CH------HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc
Q 009514 221 CCRSRCLSLQVLKLVVDALAHD-SS------DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD 283 (533)
Q Consensus 221 ~~~~~~~~~~~l~~l~~~L~~~-~~------~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~ 283 (533)
+.-..----..+|.+.++++.. ++ .+...+-.||..++.. +.-.+. ++..|+++.+.++-.
T Consensus 95 ElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~-Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 95 ELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMT-LIASGGLRVIAQMYE 162 (698)
T ss_pred hhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHH-HHhcCchHHHHHHHh
Confidence 2211100114688888888632 22 3677788899988876 333334 688999999988765
No 278
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.96 E-value=2.1e+02 Score=33.36 Aligned_cols=146 Identities=13% Similarity=0.049 Sum_probs=89.3
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHh--hcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc
Q 009514 314 LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME--LTASLLASLICDPEPSVQEQALALVRNLVDGRIN 391 (533)
Q Consensus 314 ~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~--~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 391 (533)
.+++|.|..-|.+++..+|..|+..++.+....+ ..-. +. ..+...+.=+.+.+.+||..++....++..++|+
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~--~~l~--~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~ 333 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD--SQLS--ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPS 333 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcch--hhhc--ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCch
Confidence 4889999988999999999999999999875322 1111 11 1233444445678889999999888887777665
Q ss_pred hHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHH
Q 009514 392 SVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTA 471 (533)
Q Consensus 392 ~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~ 471 (533)
...... .+..+. ..+ .++.++.....++..+.. ......+. ..++..+.+.+++....||..
T Consensus 334 ~~~~~~-----~~~~l~--~~~-~D~~~rir~~v~i~~~~v---~~~~l~~~-------~~ll~~~~eR~rDKk~~VR~~ 395 (1266)
T KOG1525|consen 334 IAKAST-----ILLALR--ERD-LDEDVRVRTQVVIVACDV---MKFKLVYI-------PLLLKLVAERLRDKKIKVRKQ 395 (1266)
T ss_pred hhhHHH-----HHHHHH--hhc-CChhhhheeeEEEEEeeh---hHhhhhhh-------HHHHHHHHHHHhhhhHHHHHH
Confidence 333221 112221 112 445555443333322221 11222222 126677777888899999999
Q ss_pred HHHHHHhhcC
Q 009514 472 AVWAVLNLTC 481 (533)
Q Consensus 472 a~~~L~~l~~ 481 (533)
|...|..+-.
T Consensus 396 Am~~LaqlYk 405 (1266)
T KOG1525|consen 396 AMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHH
Confidence 9988876654
No 279
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=70.27 E-value=1.1e+02 Score=29.81 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=104.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhc-CCchhHHHHHHh-C-cHHHHHHhhcCC-----C--------HHHHHHHHHH
Q 009514 275 VIPLVRLLDDTSTAVQVAALGAISNIVV-DFTTRRSTFIRL-G-GVKLLVQLSKSM-----D--------STIRLNALRA 338 (533)
Q Consensus 275 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~-~~~~~~~~~~~~-~-~i~~L~~ll~~~-----~--------~~~~~~al~a 338 (533)
++.+...|......+...+...|..++. +.......+... + ..+.+.+++... + +.+|.+.+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6778888888888888899999999987 554544444432 1 223344443211 1 2899999998
Q ss_pred HHHhhccCChHhHHHHHHhh-cHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc----hHHHHHhhcCchHHHHHHHhcc
Q 009514 339 LRNLIFLAEDKCKEEIFMEL-TASLLASLICDPEPSVQEQALALVRNLVDGRIN----SVEYIFAEDGIILDAVGRQLRI 413 (533)
Q Consensus 339 L~~l~~~~~~~~~~~i~~~~-~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~~~~~~~~~L~~~L~~ 413 (533)
+..+....++..+..+++.. .+..+.+-|..+++++....+.+|..-...++. ..-.++++. .+..+.++...
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~--~L~~l~~Ly~~ 215 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEW--TLSQLASLYSR 215 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHH--HHHHHHHHhcc
Confidence 88888878888888888754 477888889888999999999888854433321 223445544 66777775554
Q ss_pred CCch----hHHHHHHHHHHHhcc
Q 009514 414 ASKA----EIEIQGMYVLGNVAT 432 (533)
Q Consensus 414 ~~~~----~v~~~a~~~L~~l~~ 432 (533)
.++ .+...+-..|..+++
T Consensus 216 -~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 216 -DGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred -cCCcccchHHHHHHHHHHHHhc
Confidence 334 566666666666664
No 280
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=69.36 E-value=96 Score=28.74 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHhccCChhhHHHHHH
Q 009514 417 AEIEIQGMYVLGNVATGKESHKEAVMD 443 (533)
Q Consensus 417 ~~v~~~a~~~L~~l~~~~~~~~~~~~~ 443 (533)
.-+|.+|+.+|..++...+..|+.+++
T Consensus 127 ~yvR~aa~~aL~~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 127 EYVRMAAISALAFLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 456666666776666655555666653
No 281
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=69.21 E-value=1e+02 Score=30.31 Aligned_cols=102 Identities=15% Similarity=0.124 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc----------CChhHHHHHHHHHHhhcCCCCCCc
Q 009514 418 EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS----------NDSRLRTAAVWAVLNLTCSSSPGS 487 (533)
Q Consensus 418 ~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~----------~~~~v~~~a~~~L~~l~~~~~~~~ 487 (533)
......+.+...+.....=..+..+ +.++|.++.++-+ .++.+|..|+..+..++..-+...
T Consensus 232 ~~L~~lm~~v~ALl~N~~l~le~Yl--------h~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y 303 (343)
T cd08050 232 ALLIYLMRMVRALLDNPNLHLEPYL--------HQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSY 303 (343)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHhH--------HHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3344445555555544333444454 5677888877631 345899999999999996322222
Q ss_pred HHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcccCC
Q 009514 488 SGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDSLV 533 (533)
Q Consensus 488 ~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~~~~ 533 (533)
+.-..+ +...|.+.+.|+...+-. -..|+.-+..+++.+|
T Consensus 304 ~~l~~r-----i~~tl~k~l~d~~~~~~~-~YGAi~GL~~lG~~~v 343 (343)
T cd08050 304 NTLQPR-----ITRTLLKALLDPKKPLTT-HYGAIVGLSALGPEAV 343 (343)
T ss_pred CcHHHH-----HHHHHHHHHcCCCCCcch-hhHHHHHHHHhCccCC
Confidence 112222 233556555544433221 2466666666666554
No 282
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=68.62 E-value=1e+02 Score=28.84 Aligned_cols=219 Identities=14% Similarity=0.099 Sum_probs=118.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514 234 LVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD--TSTAVQVAALGAISNIVVDFTTRRSTF 311 (533)
Q Consensus 234 ~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~--~~~~v~~~a~~aL~nl~~~~~~~~~~~ 311 (533)
.|-.+|.++++.+|..|..+|..+-...+.. .....-+..|+....+ .|......++.++..+... .......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~----~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~-~~~~~~~ 77 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD----FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKM-KNFSPES 77 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh----hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhC-cCCChhh
Confidence 3556788999999999999998875543321 1223335666665532 3555555556777666632 2211111
Q ss_pred HHhCcHHHHHHhhc--CCCHHHHHHHHHHHHHhhccCChHhHHHHHH--hhcHHHHHhhhC-CCChhHHHHHHHHHHHhh
Q 009514 312 IRLGGVKLLVQLSK--SMDSTIRLNALRALRNLIFLAEDKCKEEIFM--ELTASLLASLIC-DPEPSVQEQALALVRNLV 386 (533)
Q Consensus 312 ~~~~~i~~L~~ll~--~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~--~~~~~~l~~lL~-~~~~~v~~~a~~~L~~l~ 386 (533)
. ...+..+.+-.+ +-....|......+..+.... +..+.. ...+..++++++ ..||.-...+..++..+.
T Consensus 78 ~-~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~----~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 78 A-VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH----REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred H-HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh----HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 1 122333332222 123567888888888886532 222221 123444555554 567777777777777665
Q ss_pred cCCc--chHHHHHhhcCchHHHHHHHh----ccCC-ch-h-HHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHH
Q 009514 387 DGRI--NSVEYIFAEDGIILDAVGRQL----RIAS-KA-E-IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI 457 (533)
Q Consensus 387 ~~~~--~~~~~i~~~~~~~~~~L~~~L----~~~~-~~-~-v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 457 (533)
..-+ +..+.+++ .+.-.. ...+ ++ . .++.-...|.+....++.- . ...+|.+
T Consensus 153 ~~~~~~~~~e~lFd-------~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a-------~~~~p~L 213 (262)
T PF14500_consen 153 QEFDISEFAEDLFD-------VFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----A-------PFAFPLL 213 (262)
T ss_pred HhcccchhHHHHHH-------HhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----H-------HHHHHHH
Confidence 4422 22222222 111111 1111 12 1 2344444444444433321 1 3456899
Q ss_pred HHhhccCChhHHHHHHHHHHhhcC
Q 009514 458 IKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 458 v~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
++=|.++...++..+..+|.....
T Consensus 214 leKL~s~~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 214 LEKLDSTSPSVKLDSLQTLKACIE 237 (262)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999988774
No 283
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=68.42 E-value=46 Score=32.67 Aligned_cols=110 Identities=18% Similarity=0.147 Sum_probs=67.8
Q ss_pred chHHHHHHhcCCC-------CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc----------CCCHHHHHH
Q 009514 230 QVLKLVVDALAHD-------SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD----------DTSTAVQVA 292 (533)
Q Consensus 230 ~~l~~l~~~L~~~-------~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~----------~~~~~v~~~ 292 (533)
..+|.++.++.+. +........+.+..|..+ +...-. .+-..++|.++.++- +.++.+|..
T Consensus 210 ~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N-~~l~le-~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 210 QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDN-PNLHLE-PYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcC-CCCchH-HhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 4688888887643 455566666677777666 444433 344557888887661 235799999
Q ss_pred HHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC--HHHHHHHHHHHHHh
Q 009514 293 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD--STIRLNALRALRNL 342 (533)
Q Consensus 293 a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~al~aL~~l 342 (533)
|+..+..++..+...-.. +...+...+.+.+.++. ...+..|+..|..+
T Consensus 288 AA~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 999999999765543221 22344455665555443 22355666666655
No 284
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=67.81 E-value=58 Score=27.18 Aligned_cols=96 Identities=5% Similarity=0.063 Sum_probs=62.2
Q ss_pred CCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhH
Q 009514 368 CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLL 447 (533)
Q Consensus 368 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~ 447 (533)
..+|+..-...+..++. -...+ . .++..+.+.|.+++++.++..|+..|-.+...+......-+.
T Consensus 15 ~~~dw~~ileicD~In~-~~~~~---k-------~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eia---- 79 (141)
T cd03565 15 QSEDWGLNMEICDIINE-TEDGP---K-------DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVA---- 79 (141)
T ss_pred CCcCHHHHHHHHHHHhC-CCCcH---H-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHH----
Confidence 34566666666655543 11111 1 167778787875468889999999888888755444443333
Q ss_pred hhhhhhHHH-HHHhhcc---CChhHHHHHHHHHHhhc
Q 009514 448 RAENKAQSC-IIKFLQS---NDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 448 ~~~~~~~~~-lv~~L~~---~~~~v~~~a~~~L~~l~ 480 (533)
..+++.. |++++.. .+..|+......+...+
T Consensus 80 --sk~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 80 --KKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred --HHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 2678886 8888863 34578988888887766
No 285
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=66.88 E-value=23 Score=31.79 Aligned_cols=100 Identities=15% Similarity=0.080 Sum_probs=67.9
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc----c-CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHH
Q 009514 421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ----S-NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLH 495 (533)
Q Consensus 421 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~----~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~ 495 (533)
..++..|..+++ .++.+..+++ +.+--.+..+|. + +..-+|..+.+.|+.+..+ +++.-+..+.
T Consensus 118 cnaL~lLQclaS-hPetk~~Fl~-------AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkN---dsq~vi~fLl 186 (315)
T COG5209 118 CNALNLLQCLAS-HPETKKVFLD-------AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKN---DSQYVIKFLL 186 (315)
T ss_pred HHHHHHHHHHhc-Ccchheeeee-------cccceeeHhhhhccccCCccceeeehHHHHHHHHHhC---CCHHHHHHHH
Confidence 345556655554 4445555554 332122333333 2 2345899999999999963 6677788888
Q ss_pred HCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhccc
Q 009514 496 DAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDS 531 (533)
Q Consensus 496 ~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~~ 531 (533)
.-.++|...++.+.+++-.+--|...++.|....+|
T Consensus 187 tTeivPLcLrIme~gSElSktvaifI~qkil~dDvG 222 (315)
T COG5209 187 TTEIVPLCLRIMELGSELSKTVAIFIFQKILGDDVG 222 (315)
T ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchh
Confidence 889999999999988888887788888877665554
No 286
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=66.72 E-value=1.9e+02 Score=31.24 Aligned_cols=103 Identities=19% Similarity=0.215 Sum_probs=72.1
Q ss_pred cHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhH
Q 009514 359 TASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHK 438 (533)
Q Consensus 359 ~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 438 (533)
.++.|..+..++=..++.+++.++.+|..+.|+.-.. ++..++..|.+ ++..+-..|.+.|-++....|..+
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-------LL~~lVNKlGD-pqnKiaskAsylL~~L~~~HPnMK 376 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-------LLVLLVNKLGD-PQNKIASKASYLLEGLLAKHPNMK 376 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-------HHHHHHHhcCC-cchhhhhhHHHHHHHHHhhCCcce
Confidence 3566666667788899999999999999998875444 45566677777 788888899999999988777544
Q ss_pred HHHHHHhhHhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHhhcC
Q 009514 439 EAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~lv~~L~~~--~~~v~~~a~~~L~~l~~ 481 (533)
-.+++ .+.+++--+ +...+..|+..|.++..
T Consensus 377 ~Vvi~------------EIer~~FRpn~~~ra~Yyav~fLnQ~~L 409 (988)
T KOG2038|consen 377 IVVID------------EIERLAFRPNVSERAHYYAVIFLNQMKL 409 (988)
T ss_pred eehHH------------HHHHHHcccCccccceeehhhhhhhhHh
Confidence 43332 344444433 33455666777766665
No 287
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=66.52 E-value=11 Score=34.20 Aligned_cols=83 Identities=24% Similarity=0.132 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHh-------CcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhc
Q 009514 288 AVQVAALGAISNIVVDFTTRRSTFIRL-------GGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFMELT 359 (533)
Q Consensus 288 ~v~~~a~~aL~nl~~~~~~~~~~~~~~-------~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~ 359 (533)
.-|..|+.+|+.++-.. .+...++.+ ..+..|++++.. +++..|+-|+-.|.+++.+.+..++..-.+...
T Consensus 139 SPqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 34778888888887532 222233222 344556666654 567889999999999998776666666667778
Q ss_pred HHHHHhhhCCCC
Q 009514 360 ASLLASLICDPE 371 (533)
Q Consensus 360 ~~~l~~lL~~~~ 371 (533)
+..|+.++++.+
T Consensus 218 i~~Li~FiE~a~ 229 (257)
T PF12031_consen 218 ISHLIAFIEDAE 229 (257)
T ss_pred HHHHHHHHHHHH
Confidence 888888886543
No 288
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=66.46 E-value=3.1e+02 Score=33.54 Aligned_cols=99 Identities=11% Similarity=0.175 Sum_probs=66.7
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCchhHH---HHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhh
Q 009514 283 DDTSTAVQVAALGAISNIVVDFTTRRS---TFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMEL 358 (533)
Q Consensus 283 ~~~~~~v~~~a~~aL~nl~~~~~~~~~---~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~ 358 (533)
.+++.++...|+..|..++..+-+..+ .-.+...+.++..++. +.+.++|+..+.++.++...... . +. .
T Consensus 1147 ~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----n-Ik-S 1220 (1780)
T PLN03076 1147 CSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----N-VK-S 1220 (1780)
T ss_pred CCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----h-hh-c
Confidence 456788999999999898875433222 2234567788877665 45678999999999998753321 1 22 2
Q ss_pred cHHHHHhhhC----CCChhHHHHHHHHHHHhhc
Q 009514 359 TASLLASLIC----DPEPSVQEQALALVRNLVD 387 (533)
Q Consensus 359 ~~~~l~~lL~----~~~~~v~~~a~~~L~~l~~ 387 (533)
|+..+..++. +.++.+...+...+..+..
T Consensus 1221 GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1221 GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 5666666664 5567788888887776654
No 289
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=66.42 E-value=94 Score=27.78 Aligned_cols=143 Identities=16% Similarity=0.114 Sum_probs=90.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHH-HHHHhcCCchhHH
Q 009514 232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGA-ISNIVVDFTTRRS 309 (533)
Q Consensus 232 l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~a-L~nl~~~~~~~~~ 309 (533)
...+..+..++..+.+..|+.++...... .+...++.+-.++. -++..+....|.. ++.+....
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~---------~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~----- 118 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDKRRKK---------LTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH----- 118 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCGGG-----------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH-----
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHHHhhh---------hhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh-----
Confidence 45566677888888888888877543211 12223455555665 3577777666443 34332110
Q ss_pred HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514 310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 389 (533)
Q Consensus 310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~ 389 (533)
....+.+...++++++-+|..++-.+........ . ......+...+.+++..||....|+|+.++..+
T Consensus 119 ----~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~~~---~-----~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~ 186 (213)
T PF08713_consen 119 ----PEALELLEKWAKSDNEWVRRAAIVMLLRYIRKED---F-----DELLEIIEALLKDEEYYVQKAIGWALREIGKKD 186 (213)
T ss_dssp ----GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGGCH---H-----HHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-
T ss_pred ----HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcC---H-----HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhC
Confidence 3456677788999999999988777665544311 1 123445566778899999999999999999998
Q ss_pred cchHHHHHhhc
Q 009514 390 INSVEYIFAED 400 (533)
Q Consensus 390 ~~~~~~i~~~~ 400 (533)
++.+...+...
T Consensus 187 ~~~v~~~l~~~ 197 (213)
T PF08713_consen 187 PDEVLEFLQKN 197 (213)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHC
Confidence 87665555543
No 290
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=66.07 E-value=2.4e+02 Score=32.58 Aligned_cols=235 Identities=17% Similarity=0.226 Sum_probs=129.0
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccc-ccchhhhhcCcHHHHHH--hhc--------CCCHHHHHHHHHHHH
Q 009514 230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN-LSAGSFMNETIVIPLVR--LLD--------DTSTAVQVAALGAIS 298 (533)
Q Consensus 230 ~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~-~~~~~~~~~~~i~~Lv~--lL~--------~~~~~v~~~a~~aL~ 298 (533)
+.+..|+.-+-++.|.+|..++-+++.+...+.. .... ..+.-.+ .++. .|. +--..|++.++++|.
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~-~led~~~-rll~v~~Ldrf~dfisd~vvapVre~caq~L~ 154 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYE-LLEDLLI-RLLCVLALDRFGDFISDNVVAPVREACAQALG 154 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHH-HHHHHHH-HHHHHHHHHHhcccccccchhhhHHHHHHHHH
Confidence 4667777777888999999998888887654221 1111 1111111 1111 111 112478999999998
Q ss_pred HHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHH---hhcHHHHHhhhCCCChhHH
Q 009514 299 NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM---ELTASLLASLICDPEPSVQ 375 (533)
Q Consensus 299 nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~---~~~~~~l~~lL~~~~~~v~ 375 (533)
.+..+... ..+ ...++.+.+++..++.+++...+..+..... .++..+. ...++....-|.+.+.+++
T Consensus 155 ~~l~~~~~---s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~a-----ir~d~l~~~~~~vl~~~i~~L~ds~ddv~ 225 (1549)
T KOG0392|consen 155 AYLKHMDE---SLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVA-----IRQDLLFQLLNLVLDFVIEGLEDSDDDVR 225 (1549)
T ss_pred HHHHhhhh---Hhh-HHHHHHHHHHHcCcchhheechHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhcchHHH
Confidence 87754322 111 2456777788887777777666655554321 2222222 2346777788899999999
Q ss_pred HHHHHHHHHhhcCCcch-HHHHHhhcCchHHHHHHHhccCCch-hHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhh
Q 009514 376 EQALALVRNLVDGRINS-VEYIFAEDGIILDAVGRQLRIASKA-EIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKA 453 (533)
Q Consensus 376 ~~a~~~L~~l~~~~~~~-~~~i~~~~~~~~~~L~~~L~~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 453 (533)
..|...+.-......+. .+.+.. ++..+...+..-.+. .-..+....+..+....+ ...+.++ ...+.++
T Consensus 226 ~~aa~~l~~~~s~~v~l~~~~i~~----lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~e--vl~l~~~--~n~~~~L 297 (1549)
T KOG0392|consen 226 SVAAQFLVPAPSIQVKLMVQKIAK----LVHTLWSFLLELDDLSSSTASIMHLLDELCIENE--VLDLFEQ--QNLEVGL 297 (1549)
T ss_pred HHHHHHhhhhhHHHHhhhHhHHHH----HHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHH--HHHHHHH--hhhhhcc
Confidence 99888877665432111 111111 233333322210011 111222333333333221 2222211 1112578
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHhhcCCC
Q 009514 454 QSCIIKFLQSNDSRLRTAAVWAVLNLTCSS 483 (533)
Q Consensus 454 ~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~ 483 (533)
+|.+.-++++.-..++-+++..+..|....
T Consensus 298 vp~~~p~l~~~i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 298 VPRLWPFLRHTISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888999888899999999998888643
No 291
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=65.96 E-value=1.2e+02 Score=28.48 Aligned_cols=158 Identities=14% Similarity=0.109 Sum_probs=89.8
Q ss_pred HHHhhhcCCCCchhHHHHHHHHHHhhccch-------hhhHhhhhhchHHHHHHhcCCCC----HHHHHHHHHHHHHHhh
Q 009514 191 LYNHLQKGSLHPRRFEGILLALADMCSKLE-------CCRSRCLSLQVLKLVVDALAHDS----SDVRSAACMCLRSVSR 259 (533)
Q Consensus 191 L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~-------~~~~~~~~~~~l~~l~~~L~~~~----~~v~~~a~~~L~~ls~ 259 (533)
+++-|.++ ...+.++..|..+..... +.|-.+.-...+|.++.-+++++ .......+..|..++.
T Consensus 69 l~KGL~Ss----~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~ 144 (262)
T PF14225_consen 69 LLKGLRSS----STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAE 144 (262)
T ss_pred HhCccCCC----CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHH
Confidence 34445444 244666666766654321 12323333457888888887776 2344566677777775
Q ss_pred ccccccchhhhhcCcHHHHHHh-hcC---CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHH
Q 009514 260 SIKNLSAGSFMNETIVIPLVRL-LDD---TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNA 335 (533)
Q Consensus 260 ~~~~~~~~~~~~~~~i~~Lv~l-L~~---~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~a 335 (533)
..+ .+.+..++.. .+. +..+....++..|+.-- +++ .+...+..++.++.++-+.+|...
T Consensus 145 ~~~---------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~-----~~~~~l~~Ll~lL~n~~~w~~~~~ 208 (262)
T PF14225_consen 145 AQG---------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPD-----HEFQILTFLLGLLENGPPWLRRKT 208 (262)
T ss_pred hCC---------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cch-----hHHHHHHHHHHHHhCCcHHHHHHH
Confidence 411 1223333333 332 34455555555554322 122 123567778899998889999999
Q ss_pred HHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCC
Q 009514 336 LRALRNLIFLAEDKCKEEIFMELTASLLASLICDPE 371 (533)
Q Consensus 336 l~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~ 371 (533)
+..|..+....+. +.. .....+..++++++.+-
T Consensus 209 L~iL~~ll~~~d~--~~~-~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 209 LQILKVLLPHVDM--RSP-HGADLISPLLRLLQTDL 241 (262)
T ss_pred HHHHHHHhccccC--CCC-cchHHHHHHHHHhCCcc
Confidence 9999998865442 222 22334677788876543
No 292
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.03 E-value=2.3e+02 Score=32.01 Aligned_cols=235 Identities=17% Similarity=0.108 Sum_probs=123.8
Q ss_pred HHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCC--
Q 009514 165 SFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD-- 242 (533)
Q Consensus 165 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~-- 242 (533)
-.+|..+.+++.++++.+.++.|+..++.++-+. +-|...++.+..+...++.. +.++-+-.++..|+++
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind----ehRSslLrivscLitvdpkq----vhhqelmalVdtLksgmv 734 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND----EHRSSLLRIVSCLITVDPKQ----VHHQELMALVDTLKSGMV 734 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech----HHHHHHHHHHHHHhccCccc----ccHHHHHHHHHHHHhcce
Confidence 3567778888888888899999887777766433 23455566666655433321 2233455566666652
Q ss_pred ------CHH----HHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc----------CCCHHHHHHHHHHHHHH--
Q 009514 243 ------SSD----VRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD----------DTSTAVQVAALGAISNI-- 300 (533)
Q Consensus 243 ------~~~----v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~----------~~~~~v~~~a~~aL~nl-- 300 (533)
+.+ .......+++...-.....++. |.++++...|...|. .+|.-+...-...|..+
T Consensus 735 t~IsgeqyklhfsllcdlmGalwrivgvngsaqrv-FgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfT 813 (2799)
T KOG1788|consen 735 TRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRV-FGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFT 813 (2799)
T ss_pred eccchhHHHHHHHHHHHHHHHHHHHHccCchheee-hhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHH
Confidence 222 2333445555554333444555 778888777766652 11322222223333221
Q ss_pred -hc-CCchhHH-------------HHHHhC---------cHHHHHHh----hcCCCHHHHHHHHHHHHHhh---------
Q 009514 301 -VV-DFTTRRS-------------TFIRLG---------GVKLLVQL----SKSMDSTIRLNALRALRNLI--------- 343 (533)
Q Consensus 301 -~~-~~~~~~~-------------~~~~~~---------~i~~L~~l----l~~~~~~~~~~al~aL~~l~--------- 343 (533)
+. ....++. .+.+.| .+..+.++ +-.+.-.--..|+..+-.+-
T Consensus 814 lavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntP 893 (2799)
T KOG1788|consen 814 LAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTP 893 (2799)
T ss_pred HHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccC
Confidence 11 1122221 122222 22222221 11111111112222222111
Q ss_pred ccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHH
Q 009514 344 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQ 410 (533)
Q Consensus 344 ~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~ 410 (533)
.+.....++++..+++...+++.+-...++.|...+..+..++..+|...+..-..| +++.+..+
T Consensus 894 sGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~g--cvellleI 958 (2799)
T KOG1788|consen 894 SGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAG--CVELLLEI 958 (2799)
T ss_pred CCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhccc--HHHHHHHH
Confidence 011123577888999999999988888899999999999999988876555444433 44444443
No 293
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.89 E-value=2.8e+02 Score=32.40 Aligned_cols=54 Identities=17% Similarity=0.038 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc--CCCHHHHHHHHHHH
Q 009514 243 SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD--DTSTAVQVAALGAI 297 (533)
Q Consensus 243 ~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~~~~~v~~~a~~aL 297 (533)
|..+-..|.+.++.++.-..+.+.. ..+.+.-...++.+. .+..++..+++|.+
T Consensus 942 dlNISltAi~lfWtvsDfl~~km~S-~sed~~~~~~~e~~~ss~~~~~~l~e~lwi~ 997 (1610)
T KOG1848|consen 942 DLNISLTAIGLFWTVSDFLKNKMFS-TSEDSCAYNSVEDLYSSMKSKEILPEVLWIM 997 (1610)
T ss_pred cccccHHHHHHHHHHHHHHHhhhhc-cchhhhhhcchhhhcccccchhhhhhHHHHH
Confidence 4455566666666665432221111 222333333444333 23445555666554
No 294
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=64.29 E-value=1.3e+02 Score=28.49 Aligned_cols=71 Identities=18% Similarity=0.269 Sum_probs=47.7
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH-HHHHHhCcHHHHHHh----hc--------CCCHHHHHHHHHHH
Q 009514 273 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR-STFIRLGGVKLLVQL----SK--------SMDSTIRLNALRAL 339 (533)
Q Consensus 273 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~-~~~~~~~~i~~L~~l----l~--------~~~~~~~~~al~aL 339 (533)
-++|+++.++++.+++++..++.+|..+....+... ..+.+.|..+.+-+. +. .+...+-..+.-++
T Consensus 119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 468999999999999999999999999997554432 124555644443332 22 12345666677777
Q ss_pred HHhh
Q 009514 340 RNLI 343 (533)
Q Consensus 340 ~~l~ 343 (533)
..++
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7664
No 295
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=63.91 E-value=1e+02 Score=28.88 Aligned_cols=146 Identities=11% Similarity=0.151 Sum_probs=78.3
Q ss_pred chhHHHHHHHHHhhcCchhHHHHHhcC--chHHHHHhhcC-----ChHHHHHHHHHHHHHhcCChhhhhhhccccCcc-c
Q 009514 32 NVSGLGASIISHSCKTSLEQKLLFDAG--VLKRLTSLLGG-----SLIQRDASLESIATIFKNNPEVVSQFVGPDTGR-T 103 (533)
Q Consensus 32 ~v~~~a~~~l~~~~~~~~~~~~i~~~g--~i~~L~~lL~~-----~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~-~ 103 (533)
+.+--+..++.-+...+.....+...+ ....+..++.. .+..+.-+++.++|+....+.. ..+... .. .
T Consensus 78 ~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~-~~~~~~--~~~~ 154 (268)
T PF08324_consen 78 ESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR-QLLLSH--FDSS 154 (268)
T ss_dssp CC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH-HHHHCT--HHTC
T ss_pred ccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH-HHHHhc--ccch
Confidence 333344455544444433333333332 13444444431 4578888999999987654433 222221 11 2
Q ss_pred HHHHHHHHhcC----ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhc-C--CCCchhhhHHHHHHhhhcCCH
Q 009514 104 LSCIIEIVKDR----FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL-D--DPGRVGDEASFAFSSLIAEKE 176 (533)
Q Consensus 104 i~~l~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll-~--~~~~~~~~a~~~L~~l~~~~~ 176 (533)
+...+..+.+. +..+|.+++.++.|++........+.-.....+..+.+.+ . .+++......-+++++....+
T Consensus 155 i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~ 234 (268)
T PF08324_consen 155 ILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSD 234 (268)
T ss_dssp HHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCh
Confidence 33333322222 6889999999999987543111111222334566777743 3 356777888888888886665
Q ss_pred HHHH
Q 009514 177 DMQK 180 (533)
Q Consensus 177 ~~~~ 180 (533)
....
T Consensus 235 ~~~~ 238 (268)
T PF08324_consen 235 SAKQ 238 (268)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 5433
No 296
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=62.58 E-value=20 Score=29.84 Aligned_cols=72 Identities=21% Similarity=0.211 Sum_probs=55.3
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCC-Chh---HHHHHHHHHHHhh
Q 009514 315 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDP-EPS---VQEQALALVRNLV 386 (533)
Q Consensus 315 ~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~-~~~---v~~~a~~~L~~l~ 386 (533)
.++..|.+-+++.++.++..|+..|-.+..+.++..+..+.....++.+.+++.++ ... |++.++..+....
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 45677777888899999999999999998877666777777777788888877643 333 8888887776654
No 297
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=62.23 E-value=20 Score=29.96 Aligned_cols=100 Identities=14% Similarity=0.123 Sum_probs=48.1
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHH
Q 009514 276 IPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIF 355 (533)
Q Consensus 276 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~ 355 (533)
..|+.+|+.+..+-.......|.|-.. +.--...-++++.+..++.=-.....--+..|+..|+.|..+-+
T Consensus 25 ~~lielLk~~~~~~~~~lldLL~~RV~-PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN-------- 95 (154)
T PF11791_consen 25 AELIELLKNPPAGEEAFLLDLLTNRVP-PGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN-------- 95 (154)
T ss_dssp HHHHHHHHS--TT-HHHHHHHHHHSS---TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT--------
T ss_pred HHHHHHHhCCCCccHHHHHHHHHhcCC-CCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc--------
Confidence 346666665544444444555544432 11111122333333333321111111236677777777754332
Q ss_pred HhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514 356 MELTASLLASLICDPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 356 ~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~ 388 (533)
+..|+.+|.+++.++-..|..+|.+...-
T Consensus 96 ----V~~LI~~L~~~d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 96 ----VQPLIDLLKSDDEELAEEAAEALKNTLLV 124 (154)
T ss_dssp ----HHHHHHGG--G-TTTHHHHHHHHHT--TT
T ss_pred ----HHHHHHHHcCCcHHHHHHHHHHHHhhHHH
Confidence 78899999999999999999998876543
No 298
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=62.04 E-value=88 Score=25.83 Aligned_cols=127 Identities=19% Similarity=0.185 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch---------hHHH----H
Q 009514 245 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT---------RRST----F 311 (533)
Q Consensus 245 ~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~---------~~~~----~ 311 (533)
-++...+.++..++...=...+ ..+++.++++++. ++.........|..+..+..+ .+.. +
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~W-----p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l 76 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQW-----PDFLEDLLQLLQS-SPQHLELVLRILRILPEEITDFRRSSLSQERRRELKDAL 76 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTS-----TTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHChhhC-----chHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHH
Confidence 4667778888888765211111 2567788888876 466666666666665543221 1111 1
Q ss_pred HH--hCcHHHHHHhhcCCC----HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHH
Q 009514 312 IR--LGGVKLLVQLSKSMD----STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV 382 (533)
Q Consensus 312 ~~--~~~i~~L~~ll~~~~----~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L 382 (533)
.+ ..++..+.+.+.... ..+...++.++.......+. ..+.....++.+.+++.+++ .+..|+.+|
T Consensus 77 ~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~---~~i~~~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 77 RSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPI---ELIINSNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-H---HHHHSSSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCH---HHhccHHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 11 123444444444322 77888999999998775542 34445556788888885444 466666543
No 299
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=61.80 E-value=53 Score=27.34 Aligned_cols=73 Identities=11% Similarity=0.131 Sum_probs=52.5
Q ss_pred hhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCC-c---HHHHHHHHHHHHhh
Q 009514 452 KAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL-D---VKLRVKTALEQFNS 527 (533)
Q Consensus 452 ~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~-~---v~~~a~~aL~~~~~ 527 (533)
.++..|.+-|.++++.++..|...|-.+..+ ........+.....+..|.+++.++.. . |++++...+..+..
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkN---cg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKN---CGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHH---SHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHc---CCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 3456788889999999999999999888863 223344556666678888888754322 2 88888888777643
No 300
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=61.35 E-value=70 Score=25.92 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=48.9
Q ss_pred hHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHC-CcHHHHHhhhcCC--------CCcHHHHHHHHHH
Q 009514 453 AQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDA-GIVSHVKNMVNDP--------CLDVKLRVKTALE 523 (533)
Q Consensus 453 ~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~-g~~~~L~~ll~~~--------~~~v~~~a~~aL~ 523 (533)
++..|.+-|++.++.|+..|..+|-.++. .|+.+....+.+. .++..+.+.-..+ ...||..|.+++.
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~---~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~ 115 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCE---KGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIK 115 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHh---hCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHH
Confidence 44578888888889999999999999995 3554444444333 3445555544322 3358888888888
Q ss_pred HHhh
Q 009514 524 QFNS 527 (533)
Q Consensus 524 ~~~~ 527 (533)
-+..
T Consensus 116 ~if~ 119 (122)
T cd03572 116 AIFS 119 (122)
T ss_pred HHhc
Confidence 7754
No 301
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=61.22 E-value=24 Score=28.26 Aligned_cols=40 Identities=20% Similarity=0.318 Sum_probs=33.3
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHh
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFD 56 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~ 56 (533)
=+|+.|+.-|.+++++|...|..+|...|..+..-..++.
T Consensus 8 w~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 8 WGIELLVTQLYDPSPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 4789999999999999999999999999987755444443
No 302
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=60.94 E-value=1.6e+02 Score=28.38 Aligned_cols=158 Identities=14% Similarity=0.149 Sum_probs=93.3
Q ss_pred cHHHHHHh-hcCC---CHHHHHHHHHHHHHhhccCChHhHHHHHHhh-------c----HHHHHhhhC------CCChhH
Q 009514 316 GVKLLVQL-SKSM---DSTIRLNALRALRNLIFLAEDKCKEEIFMEL-------T----ASLLASLIC------DPEPSV 374 (533)
Q Consensus 316 ~i~~L~~l-l~~~---~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~-------~----~~~l~~lL~------~~~~~v 374 (533)
++..|+.+ +... .-++|.+|+.++...+.+ .++.+..+++.. . ..-|.+.|- +.|+.-
T Consensus 35 vi~~LL~~~L~~~~~~~f~lR~AA~~c~kay~~~-N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~ 113 (312)
T PF04869_consen 35 VIDALLNLMLNENSVQPFDLRCAALYCFKAYFYN-NEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYR 113 (312)
T ss_dssp HHHHHHHHHT-TT--S-HHHHHHHHHHHHHHHTT--HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHH
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHHHhc-CHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHH
Confidence 44555543 3333 356899999999988874 356676666532 0 111333333 234444
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHhh--c----C----chHHHHHHHhcc----CCchhHHHHHHHHHHHhccCChhhHHH
Q 009514 375 QEQALALVRNLVDGRINSVEYIFAE--D----G----IILDAVGRQLRI----ASKAEIEIQGMYVLGNVATGKESHKEA 440 (533)
Q Consensus 375 ~~~a~~~L~~l~~~~~~~~~~i~~~--~----~----~~~~~L~~~L~~----~~~~~v~~~a~~~L~~l~~~~~~~~~~ 440 (533)
..-|..+|.++..+++...+.+++- + | ..++.+..+|.. ..++.++..-+..|+.+..+++.....
T Consensus 114 ~wfAa~il~hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~ 193 (312)
T PF04869_consen 114 CWFAAVILMHLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVND 193 (312)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHH
Confidence 5567788899998877655555432 1 1 166777666654 357788999999999998888877777
Q ss_pred HHHHhhHhhhhhhHHHHHHhhcc---CChhHHHHHHHHHHhhc
Q 009514 441 VMDQLLLRAENKAQSCIIKFLQS---NDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 441 ~~~~~~~~~~~~~~~~lv~~L~~---~~~~v~~~a~~~L~~l~ 480 (533)
+++ +...++.|++.... .+.-++--++..|+-.-
T Consensus 194 FL~------~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 194 FLS------EGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp HHC------STTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHH
T ss_pred HHc------CcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHH
Confidence 776 35678899997542 23445555555554433
No 303
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=60.01 E-value=1.6e+02 Score=33.81 Aligned_cols=151 Identities=17% Similarity=0.164 Sum_probs=83.1
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH-HHHHHhCcHHHHHHh--------hcC-CCHHHHHHHHHHHHHh
Q 009514 273 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR-STFIRLGGVKLLVQL--------SKS-MDSTIRLNALRALRNL 342 (533)
Q Consensus 273 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~-~~~~~~~~i~~L~~l--------l~~-~~~~~~~~al~aL~~l 342 (533)
++++.|+..+-++.+++|.-++-+++.+........ ...++...+..+.-+ ..+ .-..+|+.+.++|..+
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 456667777777777888777777777664322211 112222222222111 110 1136899999999998
Q ss_pred hccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHH
Q 009514 343 IFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQ 422 (533)
Q Consensus 343 ~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~ 422 (533)
..+..+..... .++.+..++..++++++...+..+.+...-. .+.++.--+.+++....-|.+ .+..++..
T Consensus 157 l~~~~~s~~~~-----~~~il~q~~~q~~w~ir~Ggll~iky~~air---~d~l~~~~~~vl~~~i~~L~d-s~ddv~~~ 227 (1549)
T KOG0392|consen 157 LKHMDESLIKE-----TLDILLQMLRQPNWEIRHGGLLGIKYNVAIR---QDLLFQLLNLVLDFVIEGLED-SDDDVRSV 227 (1549)
T ss_pred HHhhhhHhhHH-----HHHHHHHHHcCcchhheechHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhh-cchHHHHH
Confidence 87665433322 3566777777777777766555554433211 111111111155666666666 66777777
Q ss_pred HHHHHHHhcc
Q 009514 423 GMYVLGNVAT 432 (533)
Q Consensus 423 a~~~L~~l~~ 432 (533)
|...+..++.
T Consensus 228 aa~~l~~~~s 237 (1549)
T KOG0392|consen 228 AAQFLVPAPS 237 (1549)
T ss_pred HHHHhhhhhH
Confidence 7777665554
No 304
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=59.81 E-value=1.2e+02 Score=26.55 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=50.6
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 009514 230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVD 303 (533)
Q Consensus 230 ~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~ 303 (533)
-.+|.+.+-|.......+..|...+..|-......+.. -.-...+.+|-..|.+.++++...++.+|..|+..
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kil-PvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKIL-PVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTS 110 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 47888888888777777777777776664431111111 13345666677777889999999999999999643
No 305
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=58.76 E-value=12 Score=23.65 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=21.0
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHH
Q 009514 229 LQVLKLVVDALAHDSSDVRSAACMCL 254 (533)
Q Consensus 229 ~~~l~~l~~~L~~~~~~v~~~a~~~L 254 (533)
..+...+.+.+.++++.||.+|..+|
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 35677788889999999999988753
No 306
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=57.99 E-value=1.6e+02 Score=27.52 Aligned_cols=133 Identities=16% Similarity=0.131 Sum_probs=76.5
Q ss_pred hHHHHhhhcCCC----cchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhc-CChHHH-HHHHHHHHHHhcCC-hhh
Q 009514 19 MEFLLSLLNNES----ENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG-GSLIQR-DASLESIATIFKNN-PEV 91 (533)
Q Consensus 19 i~~L~~lL~~~~----~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~v~-~~al~aL~~l~~~~-~~~ 91 (533)
+|.+++-+.+++ .......|..|+..|+... ...+..++..+. +..+-+ .-.-.....+++.. |+.
T Consensus 113 LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~ 185 (262)
T PF14225_consen 113 LPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH 185 (262)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh
Confidence 466666677666 1334556778888873222 222233333332 222211 22222233333221 222
Q ss_pred hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhh
Q 009514 92 VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSL 171 (533)
Q Consensus 92 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l 171 (533)
....+..+++++.++.+-+|......|+.+....+.+ .. ...+.+.++.+++..+ ...+|..+|...
T Consensus 186 --------~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~--~~-~~~dlispllrlL~t~--~~~eAL~VLd~~ 252 (262)
T PF14225_consen 186 --------EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR--SP-HGADLISPLLRLLQTD--LWMEALEVLDEI 252 (262)
T ss_pred --------HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC--CC-cchHHHHHHHHHhCCc--cHHHHHHHHHHH
Confidence 1345677889999999999999999999988776432 11 4567899999999643 345666666544
No 307
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.73 E-value=4.3e+02 Score=32.18 Aligned_cols=225 Identities=16% Similarity=0.095 Sum_probs=111.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCch-h---hhHHHHHHhhhcCCHHHHHH
Q 009514 107 IIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRV-G---DEASFAFSSLIAEKEDMQKL 181 (533)
Q Consensus 107 l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~-~---~~a~~~L~~l~~~~~~~~~~ 181 (533)
++..+..++|..+..++..+..++...+.. .+ -....+..++-+.+ .+.+ | .-|.+++.+-...-...+.
T Consensus 881 ~~~sl~~~~p~~rc~~~ea~arLaq~v~~~---~f-~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qh- 955 (2067)
T KOG1822|consen 881 IVNSLINPNPKLRCAAAEALARLAQVVGSA---PF-VASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQH- 955 (2067)
T ss_pred HhhhhccCChHHHHHHHHHHHHHHHhcccc---ch-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchh-
Confidence 445667889999999999999988765421 12 23344444444442 2222 2 2334444433222111111
Q ss_pred HHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC-CC--CHHHHHHHHHHHH---
Q 009514 182 AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HD--SSDVRSAACMCLR--- 255 (533)
Q Consensus 182 ~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~-~~--~~~v~~~a~~~L~--- 255 (533)
...++..+..+-+++ .+|.++.-++.++.-+...........++ ..+..+..+|- .+ ..++...--+++.
T Consensus 956 --l~t~v~illal~~Ds-~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~ 1031 (2067)
T KOG1822|consen 956 --LNTSVSILLALATDS-TSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDD 1031 (2067)
T ss_pred --cccHHHHHHHHhhcC-CCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCCCCcchhhhhhhhccccccch
Confidence 113355666644444 56789998888888776543333222222 23333344433 22 2344433334443
Q ss_pred ---HHhhcccc-ccch------hhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc
Q 009514 256 ---SVSRSIKN-LSAG------SFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK 325 (533)
Q Consensus 256 ---~ls~~~~~-~~~~------~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~ 325 (533)
++.....+ ++-. .-...-..-...-++.++++-++.++..++-++-...+.. .--.-.++.+..++.
T Consensus 1032 ~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~---~n~~~lV~~L~~~l~ 1108 (2067)
T KOG1822|consen 1032 DEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRH---VNLDSLVLQLCSLLS 1108 (2067)
T ss_pred hHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchh---ccHHHHHHHHHHHhc
Confidence 33322111 1100 0111112222233445778899999999998876422211 111224566666666
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 009514 326 SMDSTIRLNALRALRNLI 343 (533)
Q Consensus 326 ~~~~~~~~~al~aL~~l~ 343 (533)
++..-.|..+...+..+.
T Consensus 1109 s~~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1109 SSYLILRRASFSCLRQLV 1126 (2067)
T ss_pred chhhhhhhhHHhhhhHHh
Confidence 665555555555555544
No 308
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=57.15 E-value=1e+02 Score=24.94 Aligned_cols=70 Identities=10% Similarity=0.237 Sum_probs=44.6
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhcc-CChhhHHHHHHHhhHhhhhhhHHHHHHhhccC--------ChhHHHHHH
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSN--------DSRLRTAAV 473 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~--------~~~v~~~a~ 473 (533)
+++.|.+.|.+ .++.|+.-++.+|-.++. |++..+..+.. ....+..+.++=..+ ...||..|-
T Consensus 39 i~d~L~kRL~~-~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~------~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~ 111 (122)
T cd03572 39 LLEYLLKRLKR-SSPHVKLKVLKIIKHLCEKGNSDFKRELQR------NSAQIRECANYKGPPDPLKGDSLNEKVREEAQ 111 (122)
T ss_pred HHHHHHHHhcC-CCCcchHHHHHHHHHHHhhCCHHHHHHHHH------hHHHHHHHHHcCCCCCcccCcchhHHHHHHHH
Confidence 77888899988 779999999999999887 44443333333 233444444443312 235777776
Q ss_pred HHHHhh
Q 009514 474 WAVLNL 479 (533)
Q Consensus 474 ~~L~~l 479 (533)
.++.-+
T Consensus 112 El~~~i 117 (122)
T cd03572 112 ELIKAI 117 (122)
T ss_pred HHHHHH
Confidence 666544
No 309
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=56.38 E-value=2.2e+02 Score=28.41 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhc-CCchhHHHHHHhCc
Q 009514 243 SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT-----STAVQVAALGAISNIVV-DFTTRRSTFIRLGG 316 (533)
Q Consensus 243 ~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-----~~~v~~~a~~aL~nl~~-~~~~~~~~~~~~~~ 316 (533)
+..|...+.+||+|+..+.+..+.. +.+......+.+.+... ...+...=...|.-+.. ......+.+.+.+|
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~-~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G 188 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDL-FLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG 188 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHH-HHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 4578889999999998885554444 66666666666655311 11223333333333322 22334456777899
Q ss_pred HHHHHHhhcCC---------C---H---HHHHHHHHHHHHhhccC
Q 009514 317 VKLLVQLSKSM---------D---S---TIRLNALRALRNLIFLA 346 (533)
Q Consensus 317 i~~L~~ll~~~---------~---~---~~~~~al~aL~~l~~~~ 346 (533)
++.+...+.++ + + ..-..++.++.|++.+.
T Consensus 189 l~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~ 233 (532)
T KOG4464|consen 189 LELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS 233 (532)
T ss_pred cHHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence 99998887652 1 1 22334666666776544
No 310
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.15 E-value=1e+02 Score=30.49 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=80.8
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHH
Q 009514 275 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEI 354 (533)
Q Consensus 275 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i 354 (533)
+.-|+..+++.+.+++..|..-|..+....+... ...-..+++.+..+..+.+..+|.....++-.+.....++. ...
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l-~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~-~sp 137 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPAEL-QSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED-QSP 137 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHH-HHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh-hcc
Confidence 5668888899999999999999987775433322 12223567777888888888899999999988766443322 122
Q ss_pred HHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCc
Q 009514 355 FMELTASLLASLICDPEPSVQEQALALVRNLVDGRI 390 (533)
Q Consensus 355 ~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~ 390 (533)
.....++.+...+.+..+++|..++..|.-+....+
T Consensus 138 ~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~ 173 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYP 173 (393)
T ss_pred hHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcC
Confidence 223345666667778889999999988888876654
No 311
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=53.98 E-value=2.5e+02 Score=30.57 Aligned_cols=134 Identities=16% Similarity=0.137 Sum_probs=82.0
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHH
Q 009514 103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLA 182 (533)
Q Consensus 103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 182 (533)
.|..++.++.+.+..+...+...+....... ++.. .+..|+...-+... ..+..+|..+- .+ ..+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~----~~~~----l~~~l~~y~~~t~s--~~~~~il~~~~--~P-~~K-- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSD----REPW----LVNGLVDYYLSTNS--QRALEILVGVQ--EP-HDK-- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhcc----chHH----HHHHHHHHHhhcCc--HHHHHHHHhcC--Cc-cHH--
Confidence 4667888888888887777666666555432 1111 23333333221111 23444444331 11 111
Q ss_pred HHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHh
Q 009514 183 FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVS 258 (533)
Q Consensus 183 ~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~-~~~~~v~~~a~~~L~~ls 258 (533)
..+..|-+++.. +..|..++..|+.+....+..--.+.+...++.|+++|. +.+..+...|+.+|..|-
T Consensus 70 ---~~~~~l~~~~~~----~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 70 ---HLFDKLNDYFVK----PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred ---HHHHHHHHHHcC----chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 123344444543 457899999999999887777778889999999999987 457777788888777663
No 312
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=53.67 E-value=2.5e+02 Score=28.34 Aligned_cols=234 Identities=12% Similarity=0.126 Sum_probs=115.4
Q ss_pred hhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcC
Q 009514 225 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVD 303 (533)
Q Consensus 225 ~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~ 303 (533)
..+....+..|+.+++++|++=|......|+++-....+.+. ++...+...+...+. .....-....+..++.+..+
T Consensus 128 ~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~--~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 128 KYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRS--FIRKSINNIFYRFIYETERHNGIAELLEILGSIING 205 (409)
T ss_dssp TTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHH--HHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT
T ss_pred HHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhc
Confidence 355667889999999999999999999999987554344443 344555666776665 34555567777888888776
Q ss_pred Cc-hhHHHHHHhCcHHHHHHhhcCCCHH-HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHH
Q 009514 304 FT-TRRSTFIRLGGVKLLVQLSKSMDST-IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALAL 381 (533)
Q Consensus 304 ~~-~~~~~~~~~~~i~~L~~ll~~~~~~-~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~ 381 (533)
+. +.++... .=....++.+.+.+.-. ....-..++..++. .++..-..++ ..+++.=--.+..=+...+.-
T Consensus 206 f~~plk~eh~-~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~-kdp~l~~~~i-----~~llk~WP~t~s~Kev~FL~e 278 (409)
T PF01603_consen 206 FAVPLKEEHK-QFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLE-KDPSLAEPVI-----KGLLKHWPKTNSQKEVLFLNE 278 (409)
T ss_dssp --SS--HHHH-HHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHH-H-GGGHHHHH-----HHHHHHS-SS-HHHHHHHHHH
T ss_pred cCCCCcHHHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-hCchhHHHHH-----HHHHHhCCCCCchhHHHHHHH
Confidence 54 2222111 01112333444433211 11222222222222 1221111111 111111111222222223334
Q ss_pred HHHhhcCCc-chHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHh
Q 009514 382 VRNLVDGRI-NSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF 460 (533)
Q Consensus 382 L~~l~~~~~-~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 460 (533)
+..+....+ .....+.. .++..+.+.+.| ++..|.+.|+....| +. .-.++.+ ....++|.+...
T Consensus 279 l~~il~~~~~~~f~~i~~---~lf~~la~ci~S-~h~qVAErAl~~w~n-----~~-~~~li~~----~~~~i~p~i~~~ 344 (409)
T PF01603_consen 279 LEEILEVLPPEEFQKIMV---PLFKRLAKCISS-PHFQVAERALYFWNN-----EY-FLSLISQ----NSRVILPIIFPA 344 (409)
T ss_dssp HHHHHTT--HHHHHHHHH---HHHHHHHHHHTS-SSHHHHHHHHGGGGS-----HH-HHHHHHC----THHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHH---HHHHHHHHHhCC-CCHHHHHHHHHHHCC-----HH-HHHHHHh----ChHHHHHHHHHH
Confidence 444443322 11111111 156777777777 888898888877543 21 1222221 012355666665
Q ss_pred hcc----C-ChhHHHHHHHHHHhhcC
Q 009514 461 LQS----N-DSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 461 L~~----~-~~~v~~~a~~~L~~l~~ 481 (533)
|.. . +..+|..|..++..+..
T Consensus 345 L~~~~~~HWn~~Vr~~a~~vl~~l~~ 370 (409)
T PF01603_consen 345 LYRNSKNHWNQTVRNLAQNVLKILME 370 (409)
T ss_dssp HSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 532 2 45799999999888884
No 313
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=52.52 E-value=2e+02 Score=26.99 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=20.1
Q ss_pred hhhcCcHH-HHHHhhc--CCCHHHHHHHHHHHHHHh
Q 009514 269 FMNETIVI-PLVRLLD--DTSTAVQVAALGAISNIV 301 (533)
Q Consensus 269 ~~~~~~i~-~Lv~lL~--~~~~~v~~~a~~aL~nl~ 301 (533)
+...++++ -|+.+|. ..++++...++..|.+|+
T Consensus 36 lg~~~iv~~DLiPiL~~~~~~~~l~~~~l~LLV~LT 71 (266)
T PF04821_consen 36 LGEWNIVQKDLIPILISYKDDDKLFLACLRLLVNLT 71 (266)
T ss_pred HHHhchhhhhHHHHHHhccCchHHHHHHHHHHHHhC
Confidence 34555555 3666664 235667777777777766
No 314
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.09 E-value=4.6e+02 Score=30.84 Aligned_cols=147 Identities=11% Similarity=0.067 Sum_probs=89.0
Q ss_pred hcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhh
Q 009514 358 LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESH 437 (533)
Q Consensus 358 ~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 437 (533)
+++|.|..=|.+.+..+|..|...++.+....... +.+....++......+.+ .+.+|+..+.....++...+++.
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~---l~~~~~~~~~~fl~r~~D-~~~~vR~~~v~~~~~~l~~~~~~ 334 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQ---LSETYDDLWSAFLGRFND-ISVEVRMECVESIKQCLLNNPSI 334 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhh---hcccchHHHHHHHHHhcc-CChhhhhhHHHHhHHHHhcCchh
Confidence 45677777778889999999999999988664321 112222245555555555 67888988888777766655543
Q ss_pred HHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHH
Q 009514 438 KEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLR 517 (533)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~ 517 (533)
..... ..+.--..+.|+++|.....++..... . .....+... .+..+.+.+.|....||..
T Consensus 335 ~~~~~------------~~~~l~~~~~D~~~rir~~v~i~~~~v-----~-~~~l~~~~~-ll~~~~eR~rDKk~~VR~~ 395 (1266)
T KOG1525|consen 335 AKAST------------ILLALRERDLDEDVRVRTQVVIVACDV-----M-KFKLVYIPL-LLKLVAERLRDKKIKVRKQ 395 (1266)
T ss_pred hhHHH------------HHHHHHhhcCChhhhheeeEEEEEeeh-----h-HhhhhhhHH-HHHHHHHHHhhhhHHHHHH
Confidence 33221 112222235566666554433333331 1 122222333 5566666677778899999
Q ss_pred HHHHHHHHhh
Q 009514 518 VKTALEQFNS 527 (533)
Q Consensus 518 a~~aL~~~~~ 527 (533)
|...|..+-+
T Consensus 396 Am~~LaqlYk 405 (1266)
T KOG1525|consen 396 AMNGLAQLYK 405 (1266)
T ss_pred HHHHHHHHHH
Confidence 9999988865
No 315
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=52.05 E-value=7 Score=21.92 Aligned_cols=14 Identities=29% Similarity=0.207 Sum_probs=11.2
Q ss_pred HHHHHHHHHHhhcC
Q 009514 468 LRTAAVWAVLNLTC 481 (533)
Q Consensus 468 v~~~a~~~L~~l~~ 481 (533)
||..|+++|+++..
T Consensus 1 VR~~Aa~aLg~igd 14 (27)
T PF03130_consen 1 VRRAAARALGQIGD 14 (27)
T ss_dssp HHHHHHHHHGGG-S
T ss_pred CHHHHHHHHHHcCC
Confidence 68899999999984
No 316
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=51.41 E-value=3.1e+02 Score=28.64 Aligned_cols=174 Identities=15% Similarity=0.099 Sum_probs=99.9
Q ss_pred CCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc--C---------CCHHHHHHHHHHHHHHhcCCchhH
Q 009514 240 AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD--D---------TSTAVQVAALGAISNIVVDFTTRR 308 (533)
Q Consensus 240 ~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~---------~~~~v~~~a~~aL~nl~~~~~~~~ 308 (533)
.+++.+|...|-..|..+.-. +-+..++..|+.+.. . .++.+|......|+.=..
T Consensus 247 ad~~~~V~~~ae~~LKr~~~~--------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~------ 312 (501)
T PF13001_consen 247 ADSNSSVSDRAEDLLKRLSVS--------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI------ 312 (501)
T ss_pred eCCcchHHHHHHHHHhhcCCC--------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH------
Confidence 356677877787777776543 235567778888765 2 356777777776643110
Q ss_pred HHHHHhCcHHHHHHhhcCC--CHHHHHHHHHHH---HHhhccCChHhHH---HHHHhhcHHHHHh----hhCCCChhHHH
Q 009514 309 STFIRLGGVKLLVQLSKSM--DSTIRLNALRAL---RNLIFLAEDKCKE---EIFMELTASLLAS----LICDPEPSVQE 376 (533)
Q Consensus 309 ~~~~~~~~i~~L~~ll~~~--~~~~~~~al~aL---~~l~~~~~~~~~~---~i~~~~~~~~l~~----lL~~~~~~v~~ 376 (533)
........+..+..-+.++ +..+|..++..+ .....+.++..-. ..+..++++.+-. -....+.+.+.
T Consensus 313 Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~ 392 (501)
T PF13001_consen 313 AATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRS 392 (501)
T ss_pred HHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHH
Confidence 0001112333333444555 567777777777 5555444432211 1222333443310 01234678899
Q ss_pred HHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514 377 QALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 377 ~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 432 (533)
.+-.+|+.++...|..+..=+. ++..|..-|.+ +.++++.+.-.+|+.++.
T Consensus 393 ~aYe~lG~L~~~~p~l~~~d~~----li~~LF~sL~~-~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 393 LAYETLGLLAKRAPSLFSKDLS----LIEFLFDSLED-ESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHHHccCcccccccHH----HHHHHHHHhhC-cchHHHHHHHHHHHHHHH
Confidence 9999999999888754311111 56666666655 678888777777777765
No 317
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=51.04 E-value=4.5e+02 Score=34.24 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=87.9
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccccc----ch--hhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 009514 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS----AG--SFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF 304 (533)
Q Consensus 231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~----~~--~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 304 (533)
.++.|++.+.+.+..++.....++..+-......- .. .-+-.+.++.+.+++.++.+.-+.-.+..|..+....
T Consensus 985 ~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~~ 1064 (3550)
T KOG0889|consen 985 FLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIESM 1064 (3550)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhhc
Confidence 67888888898999999888888877632211110 00 0022344555666666776766766666666666544
Q ss_pred chhHHHHH--HhCcHHHHHHhhcCCCH--------HHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhH
Q 009514 305 TTRRSTFI--RLGGVKLLVQLSKSMDS--------TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSV 374 (533)
Q Consensus 305 ~~~~~~~~--~~~~i~~L~~ll~~~~~--------~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v 374 (533)
+ ...+. ..+.+..+...+++... ..+..-...+.........+.-+.-.-.+....++.-|.+++..|
T Consensus 1065 ~--~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1065 P--SLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred h--HHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence 3 22222 24566666666554211 111111112221111111001111222345677888888999999
Q ss_pred HHHHHHHHHHhhcCC
Q 009514 375 QEQALALVRNLVDGR 389 (533)
Q Consensus 375 ~~~a~~~L~~l~~~~ 389 (533)
++.+...|.+++...
T Consensus 1143 R~~~~~~L~~i~~~s 1157 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELS 1157 (3550)
T ss_pred HHHHHHHHHHHHHHc
Confidence 999999999998654
No 318
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=50.90 E-value=2.3e+02 Score=27.13 Aligned_cols=206 Identities=13% Similarity=0.141 Sum_probs=119.3
Q ss_pred HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHH---HHHHhhcHHHHHhhhCCC--ChhHHHHHHHHHHH
Q 009514 310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE---EIFMELTASLLASLICDP--EPSVQEQALALVRN 384 (533)
Q Consensus 310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~---~i~~~~~~~~l~~lL~~~--~~~v~~~a~~~L~~ 384 (533)
.+..+|....++..+..-+-+.|..++....++.... -..+. ..+.+ ..+.+-.++... .+++-..+-.+++.
T Consensus 74 ef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~q-vgtr~~tv~Yl~t-~~e~~~~lv~~~~~~~~iaL~cg~mlrE 151 (342)
T KOG1566|consen 74 EFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQ-VGTRSPTVEYLET-NPEILDNLVKGYENTPEIALTCGNMLRE 151 (342)
T ss_pred HHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhh-cCCcchHHHHHHh-CHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 5566889999999998888777888888888875421 11111 11111 123333333321 24444444444444
Q ss_pred hhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHH-HHHhhcc
Q 009514 385 LVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSC-IIKFLQS 463 (533)
Q Consensus 385 l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-lv~~L~~ 463 (533)
+.... .....++... -+......++. +.-.+..-|....-.+.+........++.. ....+.+. --.++++
T Consensus 152 cirhe-~LakiiL~s~--~~~~FF~~vq~-p~FdiasdA~~tfK~llt~Hk~~vaEfl~~----n~d~ff~e~~~~Ll~s 223 (342)
T KOG1566|consen 152 CIRHE-FLAKIILEST--NFEKFFLYVQL-PNFDIASDAFSTFKELLTRHKSVVAEFLIR----NYDNFFAEVYEKLLRS 223 (342)
T ss_pred HHhhH-HHHHHHHcch--hHHHHHHHHhc-cchHHHHHHHHHHHHHHHHhHHHHHHHHHh----ChhhhHHHHHHHHhcc
Confidence 44321 1222222222 23333344444 555666667776666665433333333321 11122233 4457789
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514 464 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 464 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~ 526 (533)
+++-.+..+..+++.+.-. .+......+++.+-..+..+..++++++...|-.|-....-+.
T Consensus 224 ~Nyvtkrqs~kllg~llld-r~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfv 285 (342)
T KOG1566|consen 224 ENYVTKRQSLKLLGELLLD-RSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFV 285 (342)
T ss_pred cceehHHHHHHhHHHHHhC-CCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHh
Confidence 9999999999999998863 3345556777777778999999999999988877766555443
No 319
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=50.85 E-value=1.3e+02 Score=25.04 Aligned_cols=96 Identities=17% Similarity=0.140 Sum_probs=65.0
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHH
Q 009514 283 DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTAS 361 (533)
Q Consensus 283 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~ 361 (533)
.++|+..-...|..+.. - .. .. ..++..|.+-++ +.++.+...|+..|-.+..+.+......+.....++
T Consensus 15 ~~~dw~~ileicD~In~-~-~~-~~------k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~ 85 (141)
T cd03565 15 QSEDWGLNMEICDIINE-T-ED-GP------KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIK 85 (141)
T ss_pred CCcCHHHHHHHHHHHhC-C-CC-cH------HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhh
Confidence 34566666666666632 1 11 11 135566665555 468888888999998888877777777777777777
Q ss_pred H-HHhhhCC---CChhHHHHHHHHHHHhhc
Q 009514 362 L-LASLICD---PEPSVQEQALALVRNLVD 387 (533)
Q Consensus 362 ~-l~~lL~~---~~~~v~~~a~~~L~~l~~ 387 (533)
. |++++.. .+..|+..++.++...+.
T Consensus 86 e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 86 DVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 6 8888863 345888888888876653
No 320
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=47.94 E-value=4e+02 Score=28.99 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=58.6
Q ss_pred ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhh
Q 009514 371 EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAE 450 (533)
Q Consensus 371 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~ 450 (533)
.+..|..++.+|+.+....|..+-.+.+.. ++..|.++|..+.+..+...|+.+|..+.-.-+......+
T Consensus 81 ~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~--Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L-------- 150 (668)
T PF04388_consen 81 KPSYRLQALTLLGHFVRSQPPWLYKILQTP--LFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHL-------- 150 (668)
T ss_pred CchhHHHHHHHHHHHHhcCCchHHHHhcCh--hHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHH--------
Confidence 356778899999999998888888887766 8888989998877888888888888777654333333333
Q ss_pred hhhHHHHHHhh
Q 009514 451 NKAQSCIIKFL 461 (533)
Q Consensus 451 ~~~~~~lv~~L 461 (533)
.+++..+..++
T Consensus 151 ~~Lf~If~Rl~ 161 (668)
T PF04388_consen 151 PDLFNIFGRLL 161 (668)
T ss_pred HHHHHHHHHHH
Confidence 24445555555
No 321
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=47.16 E-value=2.8e+02 Score=34.84 Aligned_cols=226 Identities=15% Similarity=0.100 Sum_probs=108.1
Q ss_pred HHHhcCChhhHHHHHHHHHHhhhcCCCcch--hhhh--HhhhHHHHHHhcC-C-CCchhhhHHHHHHhhhcCCHHHHHHH
Q 009514 109 EIVKDRFARTRLLASLCLIVIRNASPCYLQ--DVGI--KTKLINNLLELLD-D-PGRVGDEASFAFSSLIAEKEDMQKLA 182 (533)
Q Consensus 109 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~--~~~~--~~~~i~~L~~ll~-~-~~~~~~~a~~~L~~l~~~~~~~~~~~ 182 (533)
..+...+.++|.++..+++.+........+ .... ....+..+..+-- + +++++......+. +...+..
T Consensus 488 ~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~~l 561 (2341)
T KOG0891|consen 488 SYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDAQL 561 (2341)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhhhh
Confidence 355678888888887777766553321000 0001 2223333333322 2 2334433332222 1111111
Q ss_pred HHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccc
Q 009514 183 FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIK 262 (533)
Q Consensus 183 ~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~ 262 (533)
...+.+..+...+.... -.+++.+...+++++..++...-.......+..+-++..++-..+....+.-+..+.....
T Consensus 562 aQ~~~lr~~~~al~~~~--l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~ 639 (2341)
T KOG0891|consen 562 AQPDLLRLLFIALHDEN--FAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSP 639 (2341)
T ss_pred cCchhHHHHHHHhhhhh--hhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHH
Confidence 12222333333344432 4577888888888887665333222222233333333333333333333333332222111
Q ss_pred cccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 009514 263 NLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRN 341 (533)
Q Consensus 263 ~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~al~aL~~ 341 (533)
..-. ..-...+..++..+.+++..+...+..+++.|+.....-.....+ ..++.+.+.+.. ++..-|.++++++.+
T Consensus 640 ~~i~--~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~ 716 (2341)
T KOG0891|consen 640 VLIS--PYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQ 716 (2341)
T ss_pred HHHH--hhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhh
Confidence 1100 122234455666667888888899999999988754421212222 334444444443 345568889999999
Q ss_pred hhcc
Q 009514 342 LIFL 345 (533)
Q Consensus 342 l~~~ 345 (533)
+...
T Consensus 717 l~s~ 720 (2341)
T KOG0891|consen 717 LESS 720 (2341)
T ss_pred hhcc
Confidence 8753
No 322
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=46.84 E-value=1.4e+02 Score=23.56 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=47.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhh------CCCChhHHHHHHHHHHH
Q 009514 316 GVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI------CDPEPSVQEQALALVRN 384 (533)
Q Consensus 316 ~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL------~~~~~~v~~~a~~~L~~ 384 (533)
++..|..-+.+.++.++..|+..|-.++.+.++.....+.....+..++++. .+.+..|+..+..++..
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~ 112 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQL 112 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHH
Confidence 4566666677789999999999999998887776776666655444444431 13356777777766554
No 323
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=45.20 E-value=28 Score=27.35 Aligned_cols=42 Identities=12% Similarity=0.215 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHH
Q 009514 206 EGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRS 248 (533)
Q Consensus 206 ~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~ 248 (533)
...+..+..++.. |+.-..+++.|+++.|+++|.|+|.++..
T Consensus 64 d~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~DIai 105 (108)
T PF08216_consen 64 DEEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENTDIAI 105 (108)
T ss_pred HHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCcceeh
Confidence 4567777788765 46778899999999999999999987654
No 324
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.54 E-value=1.3e+02 Score=33.96 Aligned_cols=96 Identities=22% Similarity=0.269 Sum_probs=69.1
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHH
Q 009514 283 DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASL 362 (533)
Q Consensus 283 ~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~ 362 (533)
++-++++|..|...|+--...++. .+++...+..+-+.|++.+..||..++.+|..|........+-..+-.-.-.+
T Consensus 297 RDV~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~R 373 (1048)
T KOG2011|consen 297 RDVDPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDR 373 (1048)
T ss_pred ccCchHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 567899999999999887766654 66766777788888999999999999999999987543323333444445567
Q ss_pred HHhhh-CCCChhHHHHHHHH
Q 009514 363 LASLI-CDPEPSVQEQALAL 381 (533)
Q Consensus 363 l~~lL-~~~~~~v~~~a~~~ 381 (533)
++.+. .+.+..|+...+..
T Consensus 374 IVeMadrd~~~~Vrav~L~~ 393 (1048)
T KOG2011|consen 374 IVEMADRDRNVSVRAVGLVL 393 (1048)
T ss_pred HHHHHhhhcchhHHHHHHHH
Confidence 77777 44555565554433
No 325
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=43.58 E-value=29 Score=19.69 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC
Q 009514 245 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD 284 (533)
Q Consensus 245 ~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~ 284 (533)
.+|..|+.+|+++.. ...++.|++.+++
T Consensus 2 ~vR~~aa~aLg~~~~------------~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD------------EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC------------HhHHHHHHHHhcC
Confidence 578899999987632 2445667777654
No 326
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=43.44 E-value=4.4e+02 Score=28.18 Aligned_cols=163 Identities=14% Similarity=0.037 Sum_probs=84.0
Q ss_pred cCCCCchhhhHHHHHHhhhcCCHHHHHHHHH---cCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhh-
Q 009514 154 LDDPGRVGDEASFAFSSLIAEKEDMQKLAFE---VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL- 229 (533)
Q Consensus 154 l~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~- 229 (533)
++.+...+..|..+|.-+..+.......+.. ...+..++..+. .++..+.-++++|.|+..+ +..++.+...
T Consensus 554 ~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~---~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~ 629 (745)
T KOG0301|consen 554 LQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN---ADPANQLLVVRCLANLFSN-PAGRELFMSRL 629 (745)
T ss_pred hcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc---cchhHHHHHHHHHHHhccC-HHHHHHHHHHH
Confidence 3344455566666666555443332222211 122334444333 2355678889999998765 4444444332
Q ss_pred -chHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc---C--CCHHHHHHHHHHHHHHhcC
Q 009514 230 -QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD---D--TSTAVQVAALGAISNIVVD 303 (533)
Q Consensus 230 -~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~---~--~~~~v~~~a~~aL~nl~~~ 303 (533)
..+..+.+.=...+..++.+-+....|++-..-.. -.+.+..+.|...+. + +|-+.....+.||++|+..
T Consensus 630 ~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~----~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 630 ESILDPVIEASSLSNKNLQIALATLALNYSVLLIQD----NEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhc----ccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 23333333333455677777777666765431111 122455555555443 2 2445667788899999976
Q ss_pred CchhHHHHHHhCcHHHHHHhhc
Q 009514 304 FTTRRSTFIRLGGVKLLVQLSK 325 (533)
Q Consensus 304 ~~~~~~~~~~~~~i~~L~~ll~ 325 (533)
....+ .+.+.-.+..+..-++
T Consensus 706 ~~~~~-~~A~~~~v~sia~~~~ 726 (745)
T KOG0301|consen 706 DASVI-QLAKNRSVDSIAKKLK 726 (745)
T ss_pred cHHHH-HHHHhcCHHHHHHHHH
Confidence 54333 3443334555554443
No 327
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=42.95 E-value=15 Score=28.82 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=30.0
Q ss_pred HHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHH
Q 009514 250 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVA 292 (533)
Q Consensus 250 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~ 292 (533)
..+.+..++.. +.+... +++.|+++.|+.+|.|++.++...
T Consensus 66 ~Ik~l~~La~~-P~LYp~-lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 66 EIKKLSVLATA-PELYPE-LVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHccCC-hhHHHH-HHHcCCHHHHHHHHCCCCcceehc
Confidence 44556666665 455545 789999999999999998776543
No 328
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=42.66 E-value=1.5e+02 Score=24.73 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=19.9
Q ss_pred cCchHHHHHhhcC-ChHHHHHHHHHHHH
Q 009514 57 AGVLKRLTSLLGG-SLIQRDASLESIAT 83 (533)
Q Consensus 57 ~g~i~~L~~lL~~-~~~v~~~al~aL~~ 83 (533)
...-..+..+|.+ +..+|..|+.|+..
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~ 43 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLT 43 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3444567777775 67899999998876
No 329
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=42.53 E-value=8.2e+02 Score=31.08 Aligned_cols=200 Identities=16% Similarity=0.149 Sum_probs=101.0
Q ss_pred hhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChH
Q 009514 270 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 349 (533)
Q Consensus 270 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~ 349 (533)
...+.+..+...+.++.-..+..+...+++++..++...-..+....+..+.++-.+.-..+......-+..+.... +.
T Consensus 562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~-~~ 640 (2341)
T KOG0891|consen 562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISS-PV 640 (2341)
T ss_pred cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH-HH
Confidence 34556666777888888899999999999998755432222222222222222222222222222221222121110 00
Q ss_pred hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHH
Q 009514 350 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN 429 (533)
Q Consensus 350 ~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~ 429 (533)
.-.. .-...+..++..+.+++..+...+...+..|+...........+ . .+..+.+.+....+..-+..+.+++++
T Consensus 641 ~i~~-~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~--~~~~~~~~l~~~s~~~rr~aslk~l~~ 716 (2341)
T KOG0891|consen 641 LISP-YVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-E--LFSLIIKMLQDQSSLGKRLAALKALGQ 716 (2341)
T ss_pred HHHh-hcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-h--HHHHHHHHHHHhhhhhchhHHHHHhhh
Confidence 0000 01122456666777777788888888888888554322211122 1 455555555554566778889999999
Q ss_pred hccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHhhc
Q 009514 430 VATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWAVLNLT 480 (533)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~-~~~v~~~a~~~L~~l~ 480 (533)
+.....-..+..... ..++..+++.+... ...+|.++...+.++.
T Consensus 717 l~s~~~~~v~p~~~~------P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g 762 (2341)
T KOG0891|consen 717 LESSTGYVVDPYLDY------PELLDILINILKTEQSSTIRREAIRLLGLLG 762 (2341)
T ss_pred hhcccceEecccccC------hHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence 886433222222110 12223334433332 2345566665555444
No 330
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=42.47 E-value=1.7e+02 Score=23.14 Aligned_cols=71 Identities=8% Similarity=0.077 Sum_probs=50.6
Q ss_pred hHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhh-----h-cCCCCcHHHHHHHHHHHHh
Q 009514 453 AQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNM-----V-NDPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 453 ~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~l-----l-~~~~~~v~~~a~~aL~~~~ 526 (533)
++..|..-|.++++.+...|...|-.+..+ ++.....++.....+..++++ . .+.+..||+++...++.+.
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN---~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKN---CGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHH---ccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 446777778889999999999999999963 444455667666666666543 1 2346788888888777654
No 331
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=42.37 E-value=4.9e+02 Score=28.38 Aligned_cols=379 Identities=16% Similarity=0.079 Sum_probs=174.4
Q ss_pred cchHHHHhhhcC--------CCcchhHHHHHHHHHhhc---CchhHHHHHhcCchHHHHHhhcCCh-HHHHHHHHHHHHH
Q 009514 17 ENMEFLLSLLNN--------ESENVSGLGASIISHSCK---TSLEQKLLFDAGVLKRLTSLLGGSL-IQRDASLESIATI 84 (533)
Q Consensus 17 ~~i~~L~~lL~~--------~~~~v~~~a~~~l~~~~~---~~~~~~~i~~~g~i~~L~~lL~~~~-~v~~~al~aL~~l 84 (533)
|.++.+++.|+. ++....+.|.++++++.+ .+.--.-+.+.=.++.+...+++.. -++..|+..++.+
T Consensus 408 giLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~ 487 (970)
T COG5656 408 GILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTI 487 (970)
T ss_pred hHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHH
Confidence 677888888852 123335567777777654 1222233445545666777777743 6788888888888
Q ss_pred hcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-Cchhhh
Q 009514 85 FKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDE 163 (533)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~ 163 (533)
.++-++.... ..........+++.+..|+..|+-++..+..++..+.+....--+.++.|+.+-++. .+....
T Consensus 488 eeDfkd~~il------l~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~ 561 (970)
T COG5656 488 EEDFKDNGIL------LEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSM 561 (970)
T ss_pred HHhcccchHH------HHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence 5544332110 123444566888888899999999999988876433221111123344444443321 111111
Q ss_pred HHHH-HHhhhcCCHHHHHHHHH--cCcHHHHH----HhhhcCCCC----chhHHHHHHHHHHhh---ccchhhhHhh---
Q 009514 164 ASFA-FSSLIAEKEDMQKLAFE--VNGVDKLY----NHLQKGSLH----PRRFEGILLALADMC---SKLECCRSRC--- 226 (533)
Q Consensus 164 a~~~-L~~l~~~~~~~~~~~~~--~~~l~~L~----~~L~~~~~~----~~~~~~a~~aL~~l~---~~~~~~~~~~--- 226 (533)
+.+. +...+.. .+.-..+ ......++ .++.+++.. .+-+.+|...|.-+. ..- +.+..+
T Consensus 562 vMe~fVe~fseE---Lspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSl-en~p~vLk~ 637 (970)
T COG5656 562 VMESFVEYFSEE---LSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSL-ENRPLVLKY 637 (970)
T ss_pred HHHHHHHHhHHh---hchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhc-ccchHHHHH
Confidence 1111 1111111 1110101 01112222 223333110 122233333332221 111 111111
Q ss_pred hhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCCc
Q 009514 227 LSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTST-AVQVAALGAISNIVVDFT 305 (533)
Q Consensus 227 ~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~-~v~~~a~~aL~nl~~~~~ 305 (533)
.+....|.+--.+++.-.++-..|+..+-+.+....... . .--|+.+.+..++.++.. .-.+.+.-++-|+.....
T Consensus 638 le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~-p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 638 LEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIE-P--IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGK 714 (970)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhh-h--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCc
Confidence 122345555445667777788888888877765422211 0 122344444445555553 667788888988875221
Q ss_pred hhHHHHHHhCcH-----HHHHHhhcCCCH--HHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhh--hCCCChhHHH
Q 009514 306 TRRSTFIRLGGV-----KLLVQLSKSMDS--TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL--ICDPEPSVQE 376 (533)
Q Consensus 306 ~~~~~~~~~~~i-----~~L~~ll~~~~~--~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l--L~~~~~~v~~ 376 (533)
..+.+.|.. ..+...+.+++. +=+..++..+..+.-+-..+.-.+-+. ..+++.-.. +.+....-..
T Consensus 715 ---~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~Ll~qy~p-lfi~vags~l~~~dElg~~sv 790 (970)
T COG5656 715 ---TEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDELLSQYLP-LFISVAGSGLKMIDELGPASV 790 (970)
T ss_pred ---cccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchhHHhhhH-HHHHHHhhhhhccccccchhh
Confidence 122233322 122223344433 224445555544433221111111111 111222211 1122333344
Q ss_pred HHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc
Q 009514 377 QALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR 412 (533)
Q Consensus 377 ~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~ 412 (533)
.++..+-|-.-..|...-+++++.|-....+...+.
T Consensus 791 ~aleliinnli~~P~eTLqiLe~qg~l~~FF~~wf~ 826 (970)
T COG5656 791 YALELIINNLILRPKETLQILEEQGYLQSFFEKWFS 826 (970)
T ss_pred hHHHHHHHHHhcChHHHHHHHHHcCcHHHHHHHHHh
Confidence 455555544445566666777777644444444444
No 332
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=41.85 E-value=1.4e+02 Score=29.17 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhhcCchhHHHHHhcC--chHHHHHhhcC----ChHHHHHHHHHHHHHhcCCh
Q 009514 34 SGLGASIISHSCKTSLEQKLLFDAG--VLKRLTSLLGG----SLIQRDASLESIATIFKNNP 89 (533)
Q Consensus 34 ~~~a~~~l~~~~~~~~~~~~i~~~g--~i~~L~~lL~~----~~~v~~~al~aL~~l~~~~~ 89 (533)
+-.|..++..+..++.....+...+ .+.-|+.++.. +..+|..|+.+|..++....
T Consensus 239 RllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~ 300 (329)
T PF06012_consen 239 RLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRP 300 (329)
T ss_pred HHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence 3456777777776677777777777 88899999974 45899999999999987654
No 333
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.18 E-value=1.8e+02 Score=29.76 Aligned_cols=95 Identities=9% Similarity=0.148 Sum_probs=62.1
Q ss_pred hhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHh
Q 009514 366 LICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQL 445 (533)
Q Consensus 366 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 445 (533)
.|..+|+.+-...|..+..--.+.+ .++..|.+.+.+ .++.++..|+.+|--+...+......-+.
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~~~-----------eAvralkKRi~~-k~s~vq~lALtlLE~cvkNCG~~fh~~Va-- 78 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGGPK-----------EAVRALKKRLNS-KNSKVQLLALTLLETCVKNCGYSFHLQVA-- 78 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccCcH-----------HHHHHHHHHhcc-CCcHHHHHHHHHHHHHHHhhhHHHHHHHH--
Confidence 3455666665555544433222211 167778888887 77789999999887777655555553333
Q ss_pred hHhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHh
Q 009514 446 LLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLN 478 (533)
Q Consensus 446 ~~~~~~~~~~~lv~~L~~~--~~~v~~~a~~~L~~ 478 (533)
+.++++-++...+.. +..||..+...|-.
T Consensus 79 ----~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 79 ----SKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred ----HHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 378888888888754 66899998887743
No 334
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.00 E-value=5.5e+02 Score=28.32 Aligned_cols=127 Identities=19% Similarity=0.135 Sum_probs=77.3
Q ss_pred HHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccc----hhhh
Q 009514 148 NNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL----ECCR 223 (533)
Q Consensus 148 ~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~----~~~~ 223 (533)
..|.+-++.++.++..+-++|...... .|..-.+++++.++..++.+|.+|.-.+.+.+..+ ++..
T Consensus 9 ~~l~qTl~pdps~rk~aEr~L~~~e~q----------~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~ 78 (960)
T KOG1992|consen 9 NYLLQTLSPDPSVRKPAERALRSLEGQ----------QNYPLLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSP 78 (960)
T ss_pred HHHHhcCCCCCccCchHHHHHHHhccC----------CCchHHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCc
Confidence 344555555567777777666654321 24445678878777667889999998888877521 1111
Q ss_pred Hhhhhh---chHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHH
Q 009514 224 SRCLSL---QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 289 (533)
Q Consensus 224 ~~~~~~---~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v 289 (533)
..+.+. .+-..++.++-+....++..--.+|..++..+=..++. ..+|-|+.-+++.|-.+
T Consensus 79 ~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~kWp-----tLl~dL~~~ls~~D~~~ 142 (960)
T KOG1992|consen 79 IKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDKWP-----TLLPDLVARLSSGDFNV 142 (960)
T ss_pred cccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchhhH-----HHHHHHHhhccccchHH
Confidence 122221 23455677777777888888888888887652222222 45666777776655433
No 335
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=39.99 E-value=3.4e+02 Score=28.22 Aligned_cols=144 Identities=13% Similarity=0.110 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCC--chhhhHHHHHHhh---h---cCC
Q 009514 104 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG--RVGDEASFAFSSL---I---AEK 175 (533)
Q Consensus 104 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~a~~~L~~l---~---~~~ 175 (533)
...+.+.+-+.++.-|..|+..|.. |..+ +..+|.++.++.+.. .+-..-...|.++ + .+|
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~T----------DsGL-~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N 277 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLET----------DSGL-QQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN 277 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhcc----------CccH-HHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC
Confidence 3344555666777777777776653 1111 247888888887532 1112222222222 1 123
Q ss_pred HHHHHHHHHcCcHHHHHHhhhcCC--------CCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCC--CHH
Q 009514 176 EDMQKLAFEVNGVDKLYNHLQKGS--------LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD--SSD 245 (533)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~~L~~~~--------~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~--~~~ 245 (533)
+.+.-.-+-+..+|.++.++.+.. .++.+|.-|+..+..++.+-....+. ....++..+.+.+.+. ...
T Consensus 278 p~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~s 356 (576)
T KOG2549|consen 278 PNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLS 356 (576)
T ss_pred CccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCch
Confidence 322111122345677777655432 34668888888888887643332222 3344666677766554 556
Q ss_pred HHHHHHHHHHHHhh
Q 009514 246 VRSAACMCLRSVSR 259 (533)
Q Consensus 246 v~~~a~~~L~~ls~ 259 (533)
..+.+...|..|..
T Consensus 357 t~YGai~gL~~lg~ 370 (576)
T KOG2549|consen 357 THYGAIAGLSELGH 370 (576)
T ss_pred hhhhHHHHHHHhhh
Confidence 77777777777655
No 336
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=39.64 E-value=1.8e+02 Score=22.55 Aligned_cols=67 Identities=12% Similarity=0.032 Sum_probs=45.9
Q ss_pred hhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514 228 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGA 296 (533)
Q Consensus 228 ~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~a 296 (533)
+.+.+..+++.++.++......+...+..+.++.. .... +.+-|..+-|-++-...++..+...-..
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~-a~~~-l~~iG~~~fL~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY-AAQI-LRDIGAVRFLSKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH-HHHH-HHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence 45678888998888888788888999999888732 2222 4566777776666555566665544433
No 337
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=37.41 E-value=4.3e+02 Score=26.28 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=81.2
Q ss_pred CchhHHHHHHHHHHhhccchhhhHhhhhh---chHHHHHHhcCCC--CHHHHHHHHHHHHHHhhccccccchhhhhcCcH
Q 009514 201 HPRRFEGILLALADMCSKLECCRSRCLSL---QVLKLVVDALAHD--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV 275 (533)
Q Consensus 201 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~---~~l~~l~~~L~~~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i 275 (533)
+.++..+|+++++.+..+ +.....+-+. -.+...+..+.++ +..+.....++|..= +.... +.....+
T Consensus 59 ~~~L~~qALkll~~~l~~-~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q-----~f~~~-~~~~~~~ 131 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYH-PEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ-----KFSPK-IMTSDRV 131 (372)
T ss_pred chHHHHHHHHHHHHHHcc-HHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----CCCCc-ccchhhH
Confidence 456778899999988754 3443333322 1566667777554 335555555555432 22222 4455556
Q ss_pred HHHHHhhc-----CCCHHHHHHHHHHHHHHhcCCchhHHHHHH-h-CcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514 276 IPLVRLLD-----DTSTAVQVAALGAISNIVVDFTTRRSTFIR-L-GGVKLLVQLSKSMDSTIRLNALRALRNLI 343 (533)
Q Consensus 276 ~~Lv~lL~-----~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~-~~i~~L~~ll~~~~~~~~~~al~aL~~l~ 343 (533)
..++..+. -++..+..+...++.++...++. .+.+ . -.++.++..+-+....+|..|...+..+.
T Consensus 132 ~~l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~---~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 132 ERLLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQ---QMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 66666553 24678889999999999865543 2332 2 37788887666677777887766665543
No 338
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=36.92 E-value=1.2e+02 Score=25.50 Aligned_cols=102 Identities=16% Similarity=0.171 Sum_probs=48.7
Q ss_pred ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhc-CChHHHHHHHHHHHHHhcCChhhhhh
Q 009514 16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG-GSLIQRDASLESIATIFKNNPEVVSQ 94 (533)
Q Consensus 16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~-~~~~v~~~al~aL~~l~~~~~~~~~~ 94 (533)
+.-...|+.+|+.+...-.+.....|.+-..---....-++.+++..++.==. ++..-+..|+..|++|--
T Consensus 21 a~Qt~~lielLk~~~~~~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~G-------- 92 (154)
T PF11791_consen 21 AEQTAELIELLKNPPAGEEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLG-------- 92 (154)
T ss_dssp HHHHHHHHHHHHS--TT-HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-S--------
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccC--------
Confidence 44456677777765544444444444443211112233344443333322100 122334555555555421
Q ss_pred hccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhh
Q 009514 95 FVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRN 131 (533)
Q Consensus 95 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~ 131 (533)
|=-+..++.++++.+..+...|+..|.+...
T Consensus 93 ------GYNV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 93 ------GYNVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp ------STTHHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred ------CCcHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 2247889999999999999999999887443
No 339
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.85 E-value=2.1e+02 Score=29.38 Aligned_cols=95 Identities=16% Similarity=0.117 Sum_probs=67.3
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcH
Q 009514 281 LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA 360 (533)
Q Consensus 281 lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~ 360 (533)
.|.++|+.+-...|..|-.--.+ . + .++..|-+-+.+.++.++..|+..|--+..+.+......|.+...+
T Consensus 13 ~l~~pDWa~NleIcD~IN~~~~~-~--~------eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL 83 (470)
T KOG1087|consen 13 SLAEPDWALNLEICDLINSTEGG-P--K------EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFL 83 (470)
T ss_pred cccCccHHHHHHHHHHHhcCccC-c--H------HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45567777777777766321111 1 1 4566677777777788888898888777776666677778888888
Q ss_pred HHHHhhhC-C-CChhHHHHHHHHHHH
Q 009514 361 SLLASLIC-D-PEPSVQEQALALVRN 384 (533)
Q Consensus 361 ~~l~~lL~-~-~~~~v~~~a~~~L~~ 384 (533)
+-++.+.+ . .+.+||..++.+|..
T Consensus 84 ~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 84 NEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHhccccCCcchhHHHHHHHHHHH
Confidence 88888775 3 578999999988854
No 340
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=36.71 E-value=1.3e+02 Score=24.08 Aligned_cols=38 Identities=26% Similarity=0.165 Sum_probs=30.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 009514 274 IVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFI 312 (533)
Q Consensus 274 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~ 312 (533)
+++.|+.-|.+++++|...|...|...+.+. ...+.++
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 5788999999999999999999999988655 4444444
No 341
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=36.25 E-value=3.2e+02 Score=24.50 Aligned_cols=140 Identities=11% Similarity=0.027 Sum_probs=85.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC-CCHHHHHHHHH-HHHHHhcCCchhHHHHH
Q 009514 235 VVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-TSTAVQVAALG-AISNIVVDFTTRRSTFI 312 (533)
Q Consensus 235 l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~-aL~nl~~~~~~~~~~~~ 312 (533)
+-.+.+++..+.|..|+..+...... ...+.++.+-.++.+ ++.++....+. .++.+....+
T Consensus 51 ~~~Lw~~~~~E~r~~al~~l~~~~~~---------~~~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~------- 114 (208)
T cd07064 51 VLELWQQPEREYQYVAIDLLRKYKKF---------LTPEDLPLLEELITTKSWWDTVDSLAKVVGGILLADYP------- 114 (208)
T ss_pred HHHHHcchHHHHHHHHHHHHHHHHhc---------CCHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHhCCh-------
Confidence 34466677778888888777654221 122235555556653 45666554333 3343332221
Q ss_pred HhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcch
Q 009514 313 RLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINS 392 (533)
Q Consensus 313 ~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 392 (533)
...+.+.....+++.-.|..|+-+........+. ......+..++.+++.-|+...-|+|+.++..+++.
T Consensus 115 --~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~~~--------~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~ 184 (208)
T cd07064 115 --EFEPVMDEWSTDENFWLRRTAILHQLKYKEKTDT--------DLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDW 184 (208)
T ss_pred --hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccCH--------HHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHH
Confidence 1245667888899999999887654444332221 112334555677888888888899999999998876
Q ss_pred HHHHHhhc
Q 009514 393 VEYIFAED 400 (533)
Q Consensus 393 ~~~i~~~~ 400 (533)
+...+...
T Consensus 185 V~~fl~~~ 192 (208)
T cd07064 185 VRDFVAAH 192 (208)
T ss_pred HHHHHHHh
Confidence 65555544
No 342
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=35.55 E-value=4.6e+02 Score=26.08 Aligned_cols=132 Identities=11% Similarity=0.051 Sum_probs=68.9
Q ss_pred hhhhHHHHHHhhhcCCHHHHHHHHHcC---cHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHH
Q 009514 160 VGDEASFAFSSLIAEKEDMQKLAFEVN---GVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVV 236 (533)
Q Consensus 160 ~~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~ 236 (533)
+-..|..+++.+..+. .....+-+.- .+...+..+.+++.+-.+....+++|..- .....+.....+..++
T Consensus 62 L~~qALkll~~~l~~~-~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q-----~f~~~~~~~~~~~~l~ 135 (372)
T PF12231_consen 62 LVIQALKLLGFFLYHP-EIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ-----KFSPKIMTSDRVERLL 135 (372)
T ss_pred HHHHHHHHHHHHHccH-HHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----CCCCcccchhhHHHHH
Confidence 4456777777665332 2211111111 13344455655543334555555555532 1222233333344444
Q ss_pred Hhc---C--CCCHHHHHHHHHHHHHHhhccccccchhhh-hc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 009514 237 DAL---A--HDSSDVRSAACMCLRSVSRSIKNLSAGSFM-NE-TIVIPLVRLLDDTSTAVQVAALGAISNIV 301 (533)
Q Consensus 237 ~~L---~--~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~-~~-~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~ 301 (533)
..+ . -++..+......++.++....+.. +. .. -.+|.++..+-+....++..|...+..+.
T Consensus 136 ~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~----M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~ 203 (372)
T PF12231_consen 136 AALHNIKNRFPSKSIISERLNIYKRLLSQFPQQ----MIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK 203 (372)
T ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 433 2 345667777888888886553332 22 22 36888888777777788877666665544
No 343
>PRK04330 hypothetical protein; Provisional
Probab=34.81 E-value=2e+02 Score=21.69 Aligned_cols=64 Identities=17% Similarity=0.191 Sum_probs=40.4
Q ss_pred HHHHHhhccCC--hhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514 455 SCIIKFLQSND--SRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 455 ~~lv~~L~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~ 526 (533)
..|-++.+++. .++|..|..+...|... +- .-.++...++..|-++.+||+..+- +.+.++++.
T Consensus 16 ~~L~~I~~D~sVPRNIRraa~ea~~~L~~e---~~---~~~vRaA~AIs~LdeIs~DPNmP~h--~RT~IW~iv 81 (88)
T PRK04330 16 QMLEEIINDTSVPRNIRRAATEAKEILLNE---EE---SPGVRAATAISILDEISNDPNMPLH--TRTLIWNIV 81 (88)
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHhCc---Cc---chhHHHHHHHHHHHHhhcCCCCChH--HHHHHHHHH
Confidence 34445555543 47999999999998842 21 1234556678899999988777643 334444443
No 344
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=34.71 E-value=5.5e+02 Score=26.79 Aligned_cols=109 Identities=16% Similarity=0.130 Sum_probs=69.0
Q ss_pred hHHHHHHhcCC--------CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc----------CCCHHHHHH
Q 009514 231 VLKLVVDALAH--------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD----------DTSTAVQVA 292 (533)
Q Consensus 231 ~l~~l~~~L~~--------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~----------~~~~~v~~~ 292 (533)
.+|.++.++.+ .|-.+.....+.++.|..+ ++..-. -+-...+|.++.++- +..+.+|..
T Consensus 240 LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~N-p~i~le-pYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDf 317 (576)
T KOG2549|consen 240 LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDN-PNIFLE-PYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDF 317 (576)
T ss_pred HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcC-Cccchh-hHHHHHhhHHHHhhhhhhccCCccccchHHHHHH
Confidence 67888888764 2345566666777777766 444333 244556777776551 346789999
Q ss_pred HHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 009514 293 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRALRNL 342 (533)
Q Consensus 293 a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~al~aL~~l 342 (533)
|+..+..++.++...-.. +...++..+.+.+.+. ......-++..|..|
T Consensus 318 AA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~l 368 (576)
T KOG2549|consen 318 AARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSEL 368 (576)
T ss_pred HHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHh
Confidence 999999998877654433 4445666676666554 344555566666555
No 345
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.53 E-value=6.6e+02 Score=27.65 Aligned_cols=321 Identities=16% Similarity=0.106 Sum_probs=148.0
Q ss_pred HHHHHHhcC-ChhhHHHHHHHHHHhhhcCCCcchhhhh--HhhhHHHHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHH
Q 009514 106 CIIEIVKDR-FARTRLLASLCLIVIRNASPCYLQDVGI--KTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQK 180 (533)
Q Consensus 106 ~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~~i~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~ 180 (533)
.++.++++. |.-|+.+++..+.....+-.. ..+.+. -......+.+++. +..+.+......++.+.....+...
T Consensus 530 a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF-~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~ 608 (978)
T KOG1993|consen 530 AFLNLLQDQNDLVVRLTTARTLKLVVDDWNF-SEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIA 608 (978)
T ss_pred HHHHhcCccccceeehHHHHHHHHhhhhccC-ChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 345566765 677888888888877655322 122221 1345555566665 3445667777777776644333211
Q ss_pred HHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhh-hhhchHHHHHHhcCCC-CH-------HHHHHHH
Q 009514 181 LAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRC-LSLQVLKLVVDALAHD-SS-------DVRSAAC 251 (533)
Q Consensus 181 ~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~-~~~~~l~~l~~~L~~~-~~-------~v~~~a~ 251 (533)
. .....+.-+=.+......++-.|.+.+.+|.++... .+..- .-...+-+++++-.+. +| +-.+-+.
T Consensus 609 P-~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~a---lg~qS~~~~~fL~pVIel~~D~~sP~hv~L~EDgmeLW~ 684 (978)
T KOG1993|consen 609 P-YASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNA---LGAQSFEFYPFLYPVIELSTDPSSPEHVYLLEDGMELWL 684 (978)
T ss_pred H-HHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHH---hccCCccchHHHHHHHHHhcCCCCCceeehhhhHHHHHH
Confidence 1 111111222222333334555666666677666531 11000 0012233334443322 22 1122222
Q ss_pred HHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHH-HhcCCchhHHHHHHhCcHHHHHHhhcCCCHH
Q 009514 252 MCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN-IVVDFTTRRSTFIRLGGVKLLVQLSKSMDST 330 (533)
Q Consensus 252 ~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n-l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 330 (533)
..|.|. +..... + .+..|.|+..++.. .+....+...+.. +.-+.+..- .....|..+.+..++.+-..+
T Consensus 685 ~~L~n~----~~l~p~-l--l~L~p~l~~~iE~s-te~L~t~l~Ii~sYilLd~~~fl-~~y~~~i~k~~~~~l~dvr~e 755 (978)
T KOG1993|consen 685 TTLMNS----QKLTPE-L--LLLFPHLLYIIEQS-TENLPTVLMIISSYILLDNTVFL-NDYAFGIFKKLNDLLDDVRNE 755 (978)
T ss_pred HHHhcc----cccCHH-H--HHHHHHHHHHHHhh-hhhHHHHHHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHhhHH
Confidence 333332 111111 1 23455555555422 2222333333322 111222222 122246777777877766566
Q ss_pred HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhh--CCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcC---chHH
Q 009514 331 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI--CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDG---IILD 405 (533)
Q Consensus 331 ~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~---~~~~ 405 (533)
.....+..+..+.. .+| .-......+.++.+..-+ +++.+.+...-+..++.+...+++....+.+.-. ..+.
T Consensus 756 gl~avLkiveili~-t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~ 833 (978)
T KOG1993|consen 756 GLQAVLKIVEILIK-TNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIA 833 (978)
T ss_pred HHHHHHHHHHHHHh-hhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHH
Confidence 66666666666654 222 222222334445544432 4566777777777788777777765554444321 1111
Q ss_pred HH----HHHhccCCchhHHHHHHHHHHHhccCChhhHHHHH
Q 009514 406 AV----GRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVM 442 (533)
Q Consensus 406 ~L----~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 442 (533)
.+ +.+..+-++++-++--+-+++.+...+.......+
T Consensus 834 ~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~ila~~ 874 (978)
T KOG1993|consen 834 MLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDILAVL 874 (978)
T ss_pred HHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHHHHHH
Confidence 11 12222335566666555566666654322333333
No 346
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=34.39 E-value=4.6e+02 Score=28.89 Aligned_cols=157 Identities=11% Similarity=0.061 Sum_probs=0.0
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHH
Q 009514 318 KLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIF 397 (533)
Q Consensus 318 ~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 397 (533)
..+...+..++...-...+.++.+++.-.....+. .....+.-.+-.+..-..+......+|..+++-+++....++
T Consensus 444 ~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~~~L~~l~ 520 (727)
T PF12726_consen 444 KALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDPSHLKELL 520 (727)
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q ss_pred hhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc--CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHH
Q 009514 398 AEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT--GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWA 475 (533)
Q Consensus 398 ~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~ 475 (533)
.+.+ ....+..++-+ +++++..+|..+|..... +..+..+.++++.+..+-.++.-.+-++.+.....-.-.++.+
T Consensus 521 ~d~~-~~~~i~s~lfs-p~~~l~qaA~~llk~~~d~~~R~e~i~~ll~~~~~~tL~ai~~~l~~~~~~~~~~p~pr~vr~ 598 (727)
T PF12726_consen 521 SDPD-AAQAIWSLLFS-PDDDLYQAAQDLLKQAFDVDGRLEAIQALLQSNFSPTLSAINWSLRQLTKLKFFEPCPRMVRC 598 (727)
T ss_pred cCcc-hhhHHHhheeC-CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhcchHHHHHH
Q ss_pred HHhh
Q 009514 476 VLNL 479 (533)
Q Consensus 476 L~~l 479 (533)
+..+
T Consensus 599 ~~DI 602 (727)
T PF12726_consen 599 LMDI 602 (727)
T ss_pred HHHH
No 347
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=34.33 E-value=1.8e+02 Score=21.79 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=37.6
Q ss_pred HHHHHhhccCC--hhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514 455 SCIIKFLQSND--SRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 455 ~~lv~~L~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~ 526 (533)
..|-++.+++. .++|..|-.+...|.. ++- --.++...++..|-++.+||+..+- +.+-++++.
T Consensus 13 ~~L~~I~~D~sVPRNIRr~a~ea~~~L~~---e~~---~~~vRaataIs~LdeIsnDPNmP~h--~RT~IW~i~ 78 (85)
T PF03685_consen 13 QMLERIINDTSVPRNIRRAAEEAKEILNN---EEE---SPGVRAATAISILDEISNDPNMPSH--TRTLIWNIV 78 (85)
T ss_dssp HHHHHHHT-TTS-HHHHHHHHHHHHHCT----TTS----HHHHHHHHHHHHHHHCT-TTS-HH--HHHHHHHHH
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHhC---CCc---chhHhHHHHHHHHHHhhcCCCCchH--HHHHHHHHH
Confidence 34444445443 4799999999988884 221 1244556678889999887766533 334555543
No 348
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=34.17 E-value=2.4e+02 Score=22.50 Aligned_cols=67 Identities=18% Similarity=0.300 Sum_probs=46.4
Q ss_pred hHHHHHHhcC-CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhh-cCCCHHH-HHHHHHHHHHHhcCC
Q 009514 231 VLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTAV-QVAALGAISNIVVDF 304 (533)
Q Consensus 231 ~l~~l~~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~v-~~~a~~aL~nl~~~~ 304 (533)
.+|.+.+.|. +..++.+.++...+..++...+ .....+..+++-+ .+..+.. ...+..+|..+....
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-------L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-------LSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-------CcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 5788888888 7788999999999999987632 2334555555533 3333333 478888888887543
No 349
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=34.09 E-value=2.5e+02 Score=27.72 Aligned_cols=70 Identities=10% Similarity=0.128 Sum_probs=51.6
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChh-hHHHHHHHhhHhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHhhc
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES-HKEAVMDQLLLRAENKAQSCIIKFLQ-SNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~lv~~L~-~~~~~v~~~a~~~L~~l~ 480 (533)
++..+.+.|.+ .++.|...|+..+..+...+.. .+..+-. .+|...|..++. +....|++.-...+-+.+
T Consensus 46 ~lk~i~KRln~-~dphV~L~AlTLlda~~~NCg~~~r~EVsS-------r~F~~el~al~~~~~h~kV~~k~~~lv~eWs 117 (462)
T KOG2199|consen 46 CLKAIMKRLNH-KDPHVVLQALTLLDACVANCGKRFRLEVSS-------RDFTTELRALIESKAHPKVCEKMRDLVKEWS 117 (462)
T ss_pred HHHHHHHHhcC-CCcchHHHHHHHHHHHHHhcchHHHHHHhh-------hhHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence 67788888888 8999999999999888875543 2233332 567677778887 567788888777776666
No 350
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=34.00 E-value=89 Score=29.87 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=45.0
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCC---C-------cHHHHHHHHHCCcHHHHHhhhc
Q 009514 451 NKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP---G-------SSGRLVKLHDAGIVSHVKNMVN 508 (533)
Q Consensus 451 ~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~---~-------~~~~~~~l~~~g~~~~L~~ll~ 508 (533)
..++..+++-|.+++...|..|+.+|..++....+ . ...+...+.+.|+++.|..++.
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45557888999999999999999999999862211 1 2344677899999999999986
No 351
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=33.15 E-value=1.7e+02 Score=21.89 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=40.9
Q ss_pred HHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC----CCChhHHHHHHHHH
Q 009514 312 IRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC----DPEPSVQEQALALV 382 (533)
Q Consensus 312 ~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~----~~~~~v~~~a~~~L 382 (533)
.+...+.++..++. ..+.++|...+.++.++..... .-+. .|++.+...+. +++..+...|...+
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~-----~~i~-SGW~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG-----ENIK-SGWKVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH-----HHHH-hccHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 44567788888754 4678999999999999876332 2222 34666666553 44555555554433
No 352
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.81 E-value=65 Score=31.19 Aligned_cols=62 Identities=18% Similarity=0.081 Sum_probs=48.8
Q ss_pred HHHHHHHhhc-CchhHHHHHhcCchHHHHHhhc---CChHHHHHHHHHHHHHhcCChhhhhhhccc
Q 009514 37 GASIISHSCK-TSLEQKLLFDAGVLKRLTSLLG---GSLIQRDASLESIATIFKNNPEVVSQFVGP 98 (533)
Q Consensus 37 a~~~l~~~~~-~~~~~~~i~~~g~i~~L~~lL~---~~~~v~~~al~aL~~l~~~~~~~~~~~~~~ 98 (533)
...+|+++|- +++.+..+.+.||++.++.=.. +++-+++..+.|+..+.++|...+..+.++
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 5567888665 4667999999999998877543 267899999999999999998887655443
No 353
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=31.66 E-value=1.5e+02 Score=22.50 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHH
Q 009514 241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT--STAVQVAALGAISNI 300 (533)
Q Consensus 241 ~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~nl 300 (533)
+.++.+|..|+..|..+++..+..... ....+...+.+.+.++ ......=|...|..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~--L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPT--LQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccch--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 457899999999999998764433222 3445666777766544 455666666666665
No 354
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=31.26 E-value=2.9e+02 Score=22.55 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=42.0
Q ss_pred hHHHHHHHhccCCc---hhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHH
Q 009514 403 ILDAVGRQLRIASK---AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAV 476 (533)
Q Consensus 403 ~~~~L~~~L~~~~~---~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L 476 (533)
+++.+.+.+....+ .++...++.++..+..-- ....+.+ .++++.+.++|++++ ++..|+.+|
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~--~~~~i~~-------~~~l~~~~~~l~~~~--~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISWI--PIELIIN-------SNLLNLIFQLLQSPE--LREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHS-------SSHHHHHHHHTTSCC--CHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhC--CHHHhcc-------HHHHHHHHHHcCCHH--HHHHHHHhC
Confidence 55556565655333 778888999998887632 2444443 568899999995554 477777765
No 355
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=30.99 E-value=2.5e+02 Score=21.72 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=49.5
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHH
Q 009514 451 NKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL 522 (533)
Q Consensus 451 ~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL 522 (533)
..++..|++-++.+..-....+...+..+.. .+.....+.+.|+.+-|-++-...+++.+......+
T Consensus 29 ~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-----~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 29 RLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-----SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-----CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4566777888888887888999999999885 344567888999988887777656666665544433
No 356
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=30.82 E-value=2e+02 Score=25.71 Aligned_cols=51 Identities=14% Similarity=0.030 Sum_probs=29.3
Q ss_pred HHHHHHHcCcHHHHHHhhhcCCCCc----------------hhHHHHHHHHHHhhccchhhhHhhhh
Q 009514 178 MQKLAFEVNGVDKLYNHLQKGSLHP----------------RRFEGILLALADMCSKLECCRSRCLS 228 (533)
Q Consensus 178 ~~~~~~~~~~l~~L~~~L~~~~~~~----------------~~~~~a~~aL~~l~~~~~~~~~~~~~ 228 (533)
.++.+.+.|.+..++++|..+.... ++...+...|..++.++..+...+.+
T Consensus 35 rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~ 101 (207)
T PF01365_consen 35 RQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK 101 (207)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4556677788788888776542211 23455666666666666555544443
No 357
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.47 E-value=8.2e+02 Score=27.18 Aligned_cols=215 Identities=11% Similarity=0.044 Sum_probs=115.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514 232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF 311 (533)
Q Consensus 232 l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 311 (533)
+-.+...+..++...|.+..++...-..+ .... +-...++..+.....+.|+.-+......++.+..--+
T Consensus 65 llrLaDaF~~Gn~llRf~V~rv~~q~g~h---ln~v-~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip------ 134 (970)
T KOG1988|consen 65 LLRLADAFPVGNNLLRFAVLRVDQQSGKH---LNKV-LNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP------ 134 (970)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHhhcccc---chhh-hhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc------
Confidence 34466677788888888777776532211 1111 1122233333333456789999999888887764222
Q ss_pred HHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCc
Q 009514 312 IRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRI 390 (533)
Q Consensus 312 ~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~ 390 (533)
+.+-.+.+++.-- +.++---+.|+.+..+++..+. ...+.-.+-+..+++.+. -.++.+...+.+++.|.+...
T Consensus 135 -Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~sk---~FA~si~gkis~mIef~d-~~~~mkL~li~Vfs~M~c~at 209 (970)
T KOG1988|consen 135 -EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQSK---DFACSICGKISDMIEFLD-LPVPMKLSLIPVFSHMHCHAT 209 (970)
T ss_pred -cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhhh---hhHHHHHHHHHHHhhccc-CCCCcchhHhHHHHHhcchhh
Confidence 3355666665444 3333335566677777654221 111111222333333332 234556677788888876532
Q ss_pred chHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC-ChhHH
Q 009514 391 NSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLR 469 (533)
Q Consensus 391 ~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~-~~~v~ 469 (533)
.... +.....+++.+.+...-...-+..+.+++.. ....+- +-+..+.+.++.+ ...++
T Consensus 210 ------~A~r--a~~l~m~lv~~tps~d~~v~fL~stT~Lasr---s~~ai~---------eq~d~l~q~~ked~~kivr 269 (970)
T KOG1988|consen 210 ------GASR--AFGLCMSLVSGTPSIDRVVAFLYSTTNLASR---SLVAIS---------EQSDVLLQFLKEDERKIVR 269 (970)
T ss_pred ------hhHH--HHHHHHHHhcCCCcccceeeehhhhHHHHHH---HHHHhH---------HHHHHHHHhhcCCchhHHH
Confidence 1111 4455556666555555555555566666542 123332 2335677777744 34677
Q ss_pred HHHHHHHHhhcC
Q 009514 470 TAAVWAVLNLTC 481 (533)
Q Consensus 470 ~~a~~~L~~l~~ 481 (533)
..+.|.+.+++.
T Consensus 270 ~~vl~kl~~La~ 281 (970)
T KOG1988|consen 270 LKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHHHHHhh
Confidence 778888877774
No 358
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=29.33 E-value=3.3e+02 Score=30.99 Aligned_cols=132 Identities=13% Similarity=0.051 Sum_probs=84.4
Q ss_pred CchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHH
Q 009514 201 HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR 280 (533)
Q Consensus 201 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~ 280 (533)
.+.+|.-++..|+.-... +...+.....+..+-=.|.+.+..||..+.++|..|................+=..+|+
T Consensus 300 ~~~IRaiCiqeLgiWi~~---yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVe 376 (1048)
T KOG2011|consen 300 DPDIRAICIQELGIWIKS---YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVE 376 (1048)
T ss_pred chHHHHHHHHHHHHHHHh---ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Confidence 466777777777765532 33446666677777777889999999999999999976622211111223445556777
Q ss_pred hh-cCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 009514 281 LL-DDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRN 341 (533)
Q Consensus 281 lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~ 341 (533)
+. ++-+..|+......+..+.. . -++...-+..+..++.+.++.++..|...|..
T Consensus 377 Madrd~~~~Vrav~L~~~~~~~~-~-----g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 377 MADRDRNVSVRAVGLVLCLLLSS-S-----GLLSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHhhhcchhHHHHHHHHHHHHhc-c-----cccChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 77 45667777666655543321 1 22233446677788888888888777776654
No 359
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=28.49 E-value=1.4e+02 Score=30.53 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=50.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 009514 232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIV 301 (533)
Q Consensus 232 l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~ 301 (533)
...+-....+.+++++.++..++.+++.+..+.+.. +-+...-..+++++-.+.+++-+.+..|+.-+.
T Consensus 330 ~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~-~tsp~l~~~~~~~i~~~~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 330 LKALKSLCAHKNPELQRQALLAVGNLAFCLENRRIL-ITSPSLRELLMRLIVTPEPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHHhcccChHHHHHHHHHHHHheecccccccc-cCChHHHHHHHHHhcccccccchhhhHHHHHhh
Confidence 333444455789999999999999999886554433 445555667788887788888888888887665
No 360
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=28.41 E-value=3.5e+02 Score=22.56 Aligned_cols=29 Identities=24% Similarity=0.289 Sum_probs=23.6
Q ss_pred hhcHHHHHhhhCCCChhHHHHHHHHHHHh
Q 009514 357 ELTASLLASLICDPEPSVQEQALALVRNL 385 (533)
Q Consensus 357 ~~~~~~l~~lL~~~~~~v~~~a~~~L~~l 385 (533)
....+.+.++|.++++++|..|+.+|...
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~ 44 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTW 44 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34456788999999999999999888664
No 361
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=28.26 E-value=1.7e+02 Score=22.23 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC--HHHHHHHHHHHHHh
Q 009514 284 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD--STIRLNALRALRNL 342 (533)
Q Consensus 284 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~al~aL~~l 342 (533)
+++..+|+.|+..|..++..+.... .-++..+...+.+.+.+++ ...+--|+..|..+
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~-~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSY-PTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999998665433 2233456777777777543 45677788888777
No 362
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=27.99 E-value=6.8e+02 Score=25.74 Aligned_cols=134 Identities=12% Similarity=0.075 Sum_probs=83.2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhhccCCh--HhHHHHHHhhcHHHHHhhhCCCC------hh-HHHHHHHHHHHhhcCC
Q 009514 319 LLVQLSKSMDSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPE------PS-VQEQALALVRNLVDGR 389 (533)
Q Consensus 319 ~L~~ll~~~~~~~~~~al~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~lL~~~~------~~-v~~~a~~~L~~l~~~~ 389 (533)
.+..+.+..++.-|-+|+..+..++.+.+- ..|+.+++.-|...+-+++...+ +. .+.-++..|..+|..
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~- 93 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV- 93 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC-
Confidence 355667777777788999999998876543 35677999999999999986432 23 344555666666543
Q ss_pred cchH--HHHHhhcCchHHHHHHHhccCCchh------HHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhh
Q 009514 390 INSV--EYIFAEDGIILDAVGRQLRIASKAE------IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL 461 (533)
Q Consensus 390 ~~~~--~~i~~~~~~~~~~L~~~L~~~~~~~------v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L 461 (533)
|+.. ..+++ -++.+...++...++. +...+-.+|..++.... .-..++. .|.++.+.++-
T Consensus 94 pElAsh~~~v~----~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia-------~G~~~~~~Q~y 161 (698)
T KOG2611|consen 94 PELASHEEMVS----RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIA-------SGGLRVIAQMY 161 (698)
T ss_pred hhhccCHHHHH----hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHh-------cCchHHHHHHH
Confidence 3211 23444 4566666665422222 55566666766665533 3444554 68888888776
Q ss_pred ccCC
Q 009514 462 QSND 465 (533)
Q Consensus 462 ~~~~ 465 (533)
.-++
T Consensus 162 ~~~~ 165 (698)
T KOG2611|consen 162 ELPD 165 (698)
T ss_pred hCCC
Confidence 5443
No 363
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=27.92 E-value=2.4e+02 Score=24.71 Aligned_cols=73 Identities=23% Similarity=0.184 Sum_probs=51.9
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhhcc-CChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 009514 318 KLLVQLSKSMDSTIRLNALRALRNLIFL-AEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396 (533)
Q Consensus 318 ~~L~~ll~~~~~~~~~~al~aL~~l~~~-~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 396 (533)
+.+.....+++.-+|..+...+...... ... ...++.+-.++.+++..||....|+|+.++..+++.+..+
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~ 179 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKKETDF--------DLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAF 179 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHhcccH--------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 5667888899999999888777765543 111 1224455556677889999999999999998877654444
Q ss_pred Hh
Q 009514 397 FA 398 (533)
Q Consensus 397 ~~ 398 (533)
++
T Consensus 180 l~ 181 (197)
T cd06561 180 LE 181 (197)
T ss_pred HH
Confidence 43
No 364
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=27.41 E-value=1.3e+03 Score=28.70 Aligned_cols=179 Identities=13% Similarity=0.076 Sum_probs=91.1
Q ss_pred CchhhhHHHHHHhhhcC---CHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHH
Q 009514 158 GRVGDEASFAFSSLIAE---KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKL 234 (533)
Q Consensus 158 ~~~~~~a~~~L~~l~~~---~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~ 234 (533)
..+...|...|..++.. .++....-++...+.+|..++... .+.++++.++.++.++.... ..-++. |.+.
T Consensus 1151 ~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s-~~~eVrE~ILeCv~qmI~s~----~~nIkS-GWkt 1224 (1780)
T PLN03076 1151 LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKS-NAVEIRELIIRCVSQMVLSR----VNNVKS-GWKS 1224 (1780)
T ss_pred hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHH----Hhhhhc-CcHH
Confidence 34555555555555421 112111122334577788777655 45789999999998876421 112222 3444
Q ss_pred HHHhcC----CCCHHHHHHHHHHHHHHhhc-ccccc---chhhhhcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCc
Q 009514 235 VVDALA----HDSSDVRSAACMCLRSVSRS-IKNLS---AGSFMNETIVIPLVRLLDD-TSTAVQVAALGAISNIVVDFT 305 (533)
Q Consensus 235 l~~~L~----~~~~~v~~~a~~~L~~ls~~-~~~~~---~~~~~~~~~i~~Lv~lL~~-~~~~v~~~a~~aL~nl~~~~~ 305 (533)
+..++. +.++.+...|-..+..+... .+... .. .-..++..|..+.+. .+.++--.|...|.+++....
T Consensus 1225 IF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~--~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La 1302 (1780)
T PLN03076 1225 MFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETT--TFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLA 1302 (1780)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchh--HHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHH
Confidence 444443 55667777777777655432 11111 00 011334444444443 245555566666654421100
Q ss_pred h---------------------------h-----HHHHHHhCcHHHHHHh---hcCCCHHHHHHHHHHHHHhhc
Q 009514 306 T---------------------------R-----RSTFIRLGGVKLLVQL---SKSMDSTIRLNALRALRNLIF 344 (533)
Q Consensus 306 ~---------------------------~-----~~~~~~~~~i~~L~~l---l~~~~~~~~~~al~aL~~l~~ 344 (533)
. . ........+++.|..+ ..++..+||..|+.+|-.+..
T Consensus 1303 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~ 1376 (1780)
T PLN03076 1303 EGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLR 1376 (1780)
T ss_pred hccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 0 0 0001112355555444 556788999999999987764
No 365
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=27.36 E-value=1.9e+02 Score=25.79 Aligned_cols=47 Identities=19% Similarity=0.127 Sum_probs=30.8
Q ss_pred hhHHHHHhcCchHHHHHhhcC----C---------------hHHHHHHHHHHHHHhcCChhhhhhh
Q 009514 49 LEQKLLFDAGVLKRLTSLLGG----S---------------LIQRDASLESIATIFKNNPEVVSQF 95 (533)
Q Consensus 49 ~~~~~i~~~g~i~~L~~lL~~----~---------------~~v~~~al~aL~~l~~~~~~~~~~~ 95 (533)
.+|..+.+.|+...++.+|.. . ..+-..+...|..+|.++..++..+
T Consensus 34 ~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l 99 (207)
T PF01365_consen 34 ERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYL 99 (207)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 457788999999999999863 1 1344455666666666666665444
No 366
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=27.12 E-value=8.2e+02 Score=26.39 Aligned_cols=35 Identities=9% Similarity=0.258 Sum_probs=26.8
Q ss_pred ccccccchHHHHhhhcCCCcchhHHHHHHHHHhhc
Q 009514 12 DFLQEENMEFLLSLLNNESENVSGLGASIISHSCK 46 (533)
Q Consensus 12 ~l~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~ 46 (533)
|+..++-++.++.-+++++++.+..|...+...-+
T Consensus 43 D~~lk~dLellVervqdpd~~Lq~~aLe~lr~~ir 77 (878)
T KOG2005|consen 43 DLQLKGDLELLVERVQDPDPDLQKAALESLREEIR 77 (878)
T ss_pred HHHhhhhHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 34445677889999999999999988888776543
No 367
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.35 E-value=67 Score=31.10 Aligned_cols=64 Identities=16% Similarity=-0.012 Sum_probs=48.5
Q ss_pred HHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhh
Q 009514 164 ASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL 227 (533)
Q Consensus 164 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~ 227 (533)
..+.++++....++.+..+.+.||++.+++-..-.+.+|-+++-.+.++..|..++.++++.+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 4557778887778888888899999887764443334688999999999999888776665544
No 368
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=26.31 E-value=5.9e+02 Score=24.48 Aligned_cols=79 Identities=16% Similarity=0.126 Sum_probs=59.1
Q ss_pred hCcHHHHHHhhcCC--CHHHHHHHHHHHHHhhccCCh-HhHHHHHHhhcHHHHHhhhCCC---ChhHHHHHHHHHHHhhc
Q 009514 314 LGGVKLLVQLSKSM--DSTIRLNALRALRNLIFLAED-KCKEEIFMELTASLLASLICDP---EPSVQEQALALVRNLVD 387 (533)
Q Consensus 314 ~~~i~~L~~ll~~~--~~~~~~~al~aL~~l~~~~~~-~~~~~i~~~~~~~~l~~lL~~~---~~~v~~~a~~~L~~l~~ 387 (533)
.|.+..+++.+... +...|---..++-.+.++.++ ..+..+.+.|.++.++.-+-++ +..+.+....+|+.+..
T Consensus 94 ~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELiK 173 (303)
T PF12463_consen 94 KGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELIK 173 (303)
T ss_pred ccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHHC
Confidence 47788888776653 445676777788888887776 4666788888899998876544 34688889999999998
Q ss_pred CCcch
Q 009514 388 GRINS 392 (533)
Q Consensus 388 ~~~~~ 392 (533)
.+...
T Consensus 174 ~n~~~ 178 (303)
T PF12463_consen 174 FNRDA 178 (303)
T ss_pred CCHHH
Confidence 87653
No 369
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=25.83 E-value=2.4e+02 Score=27.87 Aligned_cols=74 Identities=15% Similarity=0.176 Sum_probs=57.7
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccc-ccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCC
Q 009514 230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN-LSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDF 304 (533)
Q Consensus 230 ~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~-~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~ 304 (533)
.++..+.+-|.+.++.|...|...+..+..+++. ++.. +....+...|..++. ...+.|++.....+.+.+..+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~E-VsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLE-VSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHH-HhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 4788899999999999999999999999877554 3333 556677778888887 667888888887777777543
No 370
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=25.24 E-value=7.4e+02 Score=25.27 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=36.3
Q ss_pred CCchhHHHHHHHHHHhhccchhhhHh---hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhc
Q 009514 200 LHPRRFEGILLALADMCSKLECCRSR---CLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRS 260 (533)
Q Consensus 200 ~~~~~~~~a~~aL~~l~~~~~~~~~~---~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~ 260 (533)
.+|..-++...+++.+.......... -.+...+|.+...|+.+-.+..-.+...|..|.+.
T Consensus 84 snP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~ 147 (435)
T PF03378_consen 84 SNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLEL 147 (435)
T ss_dssp --HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHH
T ss_pred CCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46777788877777775432211111 34567889999999876555555556666666443
No 371
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=25.12 E-value=1.2e+02 Score=28.89 Aligned_cols=57 Identities=19% Similarity=0.189 Sum_probs=42.6
Q ss_pred hhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch--------------hHHHHHHhCcHHHHHHhhcC
Q 009514 270 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT--------------RRSTFIRLGGVKLLVQLSKS 326 (533)
Q Consensus 270 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~--------------~~~~~~~~~~i~~L~~ll~~ 326 (533)
.+..++..++.-|.+++...+..|+.+|.+++.+.-. +...+.+.|+++.+..+++.
T Consensus 57 ~~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 57 QRKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred hHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3557788899999999999999999999999986421 11245567788888777653
No 372
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.76 E-value=2.6e+02 Score=31.23 Aligned_cols=93 Identities=15% Similarity=0.059 Sum_probs=65.9
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHH----hhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc
Q 009514 230 QVLKLVVDALAHDSSDVRSAACMCLRSV----SRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT 305 (533)
Q Consensus 230 ~~l~~l~~~L~~~~~~v~~~a~~~L~~l----s~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~ 305 (533)
.++..-..+|++++..+|..+..++..- +.. ++.--. .-....|.+++.+...++-+...|+.+|.++....+
T Consensus 803 kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~-~n~LlP--lvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 803 KILGRGIHLLSHESLRIRVKALDVLSLGLPLLATY-HNLLLP--LVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhcc-chhHhH--HHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 4666677789999999999999887643 222 222111 345678889999999999999999999999987666
Q ss_pred hhHHHHHHhCcHHHHHHhhc
Q 009514 306 TRRSTFIRLGGVKLLVQLSK 325 (533)
Q Consensus 306 ~~~~~~~~~~~i~~L~~ll~ 325 (533)
++...=+-.+.+|.+-.+++
T Consensus 880 DFv~sR~l~dvlP~l~~~~~ 899 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQ 899 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 54433333466777665554
No 373
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=24.74 E-value=9e+02 Score=26.08 Aligned_cols=63 Identities=14% Similarity=0.279 Sum_probs=40.0
Q ss_pred HhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChh
Q 009514 364 ASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES 436 (533)
Q Consensus 364 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~ 436 (533)
-++|.=.++.+|...--+++-++-++|.. .+++.|.+.. ++.+.++..+++++++-+..|...
T Consensus 646 ~h~l~yge~~iRravPLal~llsvSNPq~---------~vlDtLsk~s-hd~D~eva~naIfamGLiGAGTnN 708 (878)
T KOG2005|consen 646 GHLLHYGEPHIRRAVPLALGLLSVSNPQV---------NVLDTLSKFS-HDGDLEVAMNAIFAMGLIGAGTNN 708 (878)
T ss_pred HHHHHcCCHHHHHHHHHHHhhhccCCCcc---------hHHHHHHHhc-cCcchHHHHHHHHHhccccCCcch
Confidence 33444455556655555555555555421 0677776544 448899999999999988877653
No 374
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=24.68 E-value=9e+02 Score=26.03 Aligned_cols=152 Identities=17% Similarity=0.095 Sum_probs=71.6
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHH---hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHh
Q 009514 281 LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR---LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME 357 (533)
Q Consensus 281 lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~---~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~ 357 (533)
++..-.++++--|+.+|+.++.+...+...+.. .+.+..++..+. .++.-+.-++++|.|+..+ +..++-+...
T Consensus 552 ~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~--~~g~~~~~s~ 628 (745)
T KOG0301|consen 552 ILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN--PAGRELFMSR 628 (745)
T ss_pred HHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC--HHHHHHHHHH
Confidence 333456777888888888777655443322221 123444444444 4466788899999999764 4344433322
Q ss_pred --hcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcC--chHHHHHHHhccCCchhHHHHHHHHHHHhccC
Q 009514 358 --LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDG--IILDAVGRQLRIASKAEIEIQGMYVLGNVATG 433 (533)
Q Consensus 358 --~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~--~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~ 433 (533)
..+..+...=..++..++........|.+-.- ++.--+.++ ++...+...+....+-+-.-..+.+|++++..
T Consensus 629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l---~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 629 LESILDPVIEASSLSNKNLQIALATLALNYSVLL---IQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV 705 (745)
T ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH---HhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence 11222222222344555554444444433110 000000111 12223323333222333344456678888876
Q ss_pred ChhhH
Q 009514 434 KESHK 438 (533)
Q Consensus 434 ~~~~~ 438 (533)
....+
T Consensus 706 ~~~~~ 710 (745)
T KOG0301|consen 706 DASVI 710 (745)
T ss_pred cHHHH
Confidence 64333
No 375
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.59 E-value=1.2e+03 Score=27.61 Aligned_cols=153 Identities=14% Similarity=0.105 Sum_probs=68.2
Q ss_pred HhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHH-HHHHHcCc-HHHHHHhhhcCCCCchhHHHHHHHHHHhhccc
Q 009514 143 KTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQ-KLAFEVNG-VDKLYNHLQKGSLHPRRFEGILLALADMCSKL 219 (533)
Q Consensus 143 ~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~~-l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~ 219 (533)
..++.|.+.+.... -...+..++-++++.+..+.... ...++..+ +.....+........+++...+.++.++....
T Consensus 794 ~~naa~~l~t~~n~vl~s~~~~~asals~da~~dv~sk~ti~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ 873 (1610)
T KOG1848|consen 794 IINAAPELRTRANNVLASILVDVASALSNDASPDVYSKQTIFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETV 873 (1610)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhhhhcccccchhccceeeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhcc
Confidence 34455555544432 12334444455555554433322 22233322 33333322222234556677777776665322
Q ss_pred hhhhHhhhhhchHHHHHHhcC----CC---CHHHHHHHHHHHHHHhhcc-ccccchhhhhcCcHHHHHHhhc-CCCHHHH
Q 009514 220 ECCRSRCLSLQVLKLVVDALA----HD---SSDVRSAACMCLRSVSRSI-KNLSAGSFMNETIVIPLVRLLD-DTSTAVQ 290 (533)
Q Consensus 220 ~~~~~~~~~~~~l~~l~~~L~----~~---~~~v~~~a~~~L~~ls~~~-~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~ 290 (533)
.+ ..-.| -+.+.+.++ .+ ...+...+-.+|+-++... +.+... .-.+.+..++...+ .+|..+-
T Consensus 874 ge----~ll~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~s--ci~~lidtl~~fs~QktdlNIS 946 (1610)
T KOG1848|consen 874 GE----HLLHG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTS--CILDLIDTLLVFSRQKTDLNIS 946 (1610)
T ss_pred ch----hhccc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChH--HHHHHHHHHHHHHhhhcccccc
Confidence 11 11112 233333322 22 3345555566666655431 111111 12345555555554 4677777
Q ss_pred HHHHHHHHHHhc
Q 009514 291 VAALGAISNIVV 302 (533)
Q Consensus 291 ~~a~~aL~nl~~ 302 (533)
-.|.+-+.++.+
T Consensus 947 ltAi~lfWtvsD 958 (1610)
T KOG1848|consen 947 LTAIGLFWTVSD 958 (1610)
T ss_pred HHHHHHHHHHHH
Confidence 777777777663
No 376
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=24.49 E-value=4.9e+02 Score=22.88 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=46.5
Q ss_pred HHHHHhhhCCCChhHHHHHHHHHHHhhcC-CcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhH
Q 009514 360 ASLLASLICDPEPSVQEQALALVRNLVDG-RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHK 438 (533)
Q Consensus 360 ~~~l~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 438 (533)
++.+.+-|...+...+.-|...+..+... ..+ .++..-.+++..+..-|.+ .+++|...++.+|..+...++..-
T Consensus 40 Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~---kilPvlPqLI~plk~AL~t-r~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 40 LPIFFDGLRETEHPYRFLARQGIKDLLERGGGE---KILPVLPQLIIPLKRALNT-RDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred HHHHHhhhhccCccHHHHHHHHHHHHHHhcchh---HHHHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHhhhhhh
Confidence 45556666666666666666666666544 222 2222211244555555666 899999999999999976554333
Q ss_pred H
Q 009514 439 E 439 (533)
Q Consensus 439 ~ 439 (533)
+
T Consensus 116 ~ 116 (183)
T PF10274_consen 116 E 116 (183)
T ss_pred H
Confidence 3
No 377
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=24.43 E-value=3.1e+02 Score=20.52 Aligned_cols=65 Identities=18% Similarity=0.262 Sum_probs=42.4
Q ss_pred hhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh----cCCCHHHHHHHHHHH
Q 009514 270 MNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS----KSMDSTIRLNALRAL 339 (533)
Q Consensus 270 ~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll----~~~~~~~~~~al~aL 339 (533)
.+..++.|+..++. .++.++|+....++.++..... .-+.+|+ +.+...+ .++++.+...|...+
T Consensus 14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~----~~i~SGW-~~if~il~~aa~~~~e~lv~~af~~~ 83 (86)
T PF09324_consen 14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRG----ENIKSGW-KVIFSILRAAAKDNDESLVRLAFQIV 83 (86)
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH----HHHHhcc-HHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34567888988875 5689999999999999986433 3345564 3433333 334555655555444
No 378
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=23.11 E-value=8.5e+02 Score=25.20 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=37.6
Q ss_pred hhhhHHHHHHhhcc-CChhHHHHHHHHHHhhcCCCC---------CCcHHHHHHHHHCCcHHHHHhhh
Q 009514 450 ENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLTCSSS---------PGSSGRLVKLHDAGIVSHVKNMV 507 (533)
Q Consensus 450 ~~~~~~~lv~~L~~-~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~l~~~g~~~~L~~ll 507 (533)
+.++++.|+.+|.. .+..++.+|+.+|..+..... .+...-.+.+.....+..|++..
T Consensus 60 ~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~m 127 (475)
T PF04499_consen 60 EQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIM 127 (475)
T ss_pred HhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHH
Confidence 47899999999973 456789999988877764211 12233455566666666666543
No 379
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=21.74 E-value=4e+02 Score=20.91 Aligned_cols=87 Identities=11% Similarity=0.220 Sum_probs=50.5
Q ss_pred CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhh
Q 009514 370 PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRA 449 (533)
Q Consensus 370 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 449 (533)
+.+.++.-..|++.+..... . +++.+.+.+.. ..+.-+..+++++-.+...........+.
T Consensus 17 S~~~I~~lt~~a~~~~~~a~-----~-------iv~~i~~~i~~-~~~~~KL~~LYL~dsIvkn~~~~~~~~~~------ 77 (114)
T cd03562 17 SQPSIQTLTKLAIENRKHAK-----E-------IVEIIEKHIKK-CPPEQKLPLLYLLDSIVKNVGRKYKEFFS------ 77 (114)
T ss_pred cHHHHHHHHHHHHHHHHHHH-----H-------HHHHHHHHHHh-CCcccchHHHHHHHHHHHHcccchHHHHH------
Confidence 44556666666666653211 1 55555566655 55677788888888887644333333333
Q ss_pred hhhhHHHHHHhhccCChhHHHHHHHHH
Q 009514 450 ENKAQSCIIKFLQSNDSRLRTAAVWAV 476 (533)
Q Consensus 450 ~~~~~~~lv~~L~~~~~~v~~~a~~~L 476 (533)
..+.+.+.......++.+|......+
T Consensus 78 -~~~~~~f~~~~~~~~~~~r~kl~rl~ 103 (114)
T cd03562 78 -EFLVPLFLDAYEKVDEKTRKKLERLL 103 (114)
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33356666666667777775544333
No 380
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=21.51 E-value=1.1e+02 Score=19.72 Aligned_cols=29 Identities=3% Similarity=0.067 Sum_probs=18.6
Q ss_pred HHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514 502 HVKNMVNDPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 502 ~L~~ll~~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
.+.+.+.++++..+++...+|..+.+|++
T Consensus 11 vl~~fl~~~~~~~~~~llpvi~tlL~fs~ 39 (46)
T PF01465_consen 11 VLLQFLESREPSEREQLLPVIATLLKFSP 39 (46)
T ss_dssp HHHHHHTTSS---HHHHHHHHHHHTT--H
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHHCCCH
Confidence 56677776667788888888888888875
No 381
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=20.46 E-value=6.7e+02 Score=23.02 Aligned_cols=119 Identities=14% Similarity=0.162 Sum_probs=65.1
Q ss_pred hcCCCHHHHHHHHHHHHHhhcc-----CChHhHHHHHHh--hcHHHHHhhhCCCChhHHHHHHHHHHHhhcC----Cc--
Q 009514 324 SKSMDSTIRLNALRALRNLIFL-----AEDKCKEEIFME--LTASLLASLICDPEPSVQEQALALVRNLVDG----RI-- 390 (533)
Q Consensus 324 l~~~~~~~~~~al~aL~~l~~~-----~~~~~~~~i~~~--~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~----~~-- 390 (533)
++++++.+...++.+..++-.. ......+..++. ..-..++.++.+.++.++..++..+..+... ..
T Consensus 2 l~d~d~~v~K~~I~~~~~iy~~~~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~ 81 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIYPLVFRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDS 81 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCC
Confidence 4556666666666666554211 011222333332 2346677778888888888888877655411 00
Q ss_pred c---------------------hHHHHHhhcCchHHHHHHHhccCC-chhHHHHHHHHHHHhccCChhhHHHHH
Q 009514 391 N---------------------SVEYIFAEDGIILDAVGRQLRIAS-KAEIEIQGMYVLGNVATGKESHKEAVM 442 (533)
Q Consensus 391 ~---------------------~~~~i~~~~~~~~~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~ 442 (533)
. ....+-.++..+++.|...+.+.. ++.....++..|+.++...+.....++
T Consensus 82 ~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~~~~~Il 155 (239)
T PF11935_consen 82 PPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQFMSRIL 155 (239)
T ss_dssp ---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred ccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 0 011222223237778888887744 466777788888888876555544444
No 382
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=20.40 E-value=6.6e+02 Score=22.92 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=21.0
Q ss_pred HHHHH-HHHhcCChhhHHHHHHHHHHhhh
Q 009514 104 LSCII-EIVKDRFARTRLLASLCLIVIRN 131 (533)
Q Consensus 104 i~~l~-~ll~~~~~~v~~~a~~~L~~l~~ 131 (533)
...++ +.+.+++..+|..|.+.|..+..
T Consensus 197 ~R~iLsKaLt~~s~~iRl~aT~~L~~llr 225 (226)
T PF14666_consen 197 PRIILSKALTSGSESIRLYATKHLRVLLR 225 (226)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 34444 47888888999999998887653
Done!