Query 009514
Match_columns 533
No_of_seqs 215 out of 2523
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 06:54:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jdh_A Beta-catenin; beta-cate 100.0 2.4E-43 8.1E-48 368.6 47.0 487 12-526 12-529 (529)
2 2z6h_A Catenin beta-1, beta-ca 100.0 1.2E-41 4.2E-46 363.0 48.7 492 11-529 8-529 (644)
3 3now_A UNC-45 protein, SD10334 100.0 3.8E-42 1.3E-46 362.9 42.9 485 22-529 252-784 (810)
4 3now_A UNC-45 protein, SD10334 100.0 2.6E-42 8.8E-47 364.2 37.0 446 15-480 288-781 (810)
5 3ul1_B Importin subunit alpha- 100.0 1.3E-40 4.5E-45 344.4 42.8 412 102-527 57-478 (510)
6 2z6g_A B-catenin; FULL-length, 100.0 2.1E-40 7.2E-45 358.7 45.1 489 15-530 148-666 (780)
7 3tpo_A Importin subunit alpha- 100.0 8.6E-40 2.9E-44 340.2 43.5 413 101-527 75-497 (529)
8 4b8j_A Importin subunit alpha- 100.0 5.6E-38 1.9E-42 327.6 41.1 413 102-529 74-498 (528)
9 1wa5_B Importin alpha subunit; 100.0 2.2E-37 7.4E-42 323.1 42.8 414 101-528 86-511 (530)
10 1jdh_A Beta-catenin; beta-cate 100.0 7.3E-38 2.5E-42 327.0 36.3 450 54-527 13-489 (529)
11 3ul1_B Importin subunit alpha- 100.0 1.4E-37 4.6E-42 321.8 36.2 408 17-433 57-479 (510)
12 2z6g_A B-catenin; FULL-length, 100.0 4.1E-37 1.4E-41 333.0 40.7 477 17-527 115-622 (780)
13 2jdq_A Importin alpha-1 subuni 100.0 1.4E-36 4.9E-41 310.6 40.8 411 103-528 21-444 (450)
14 2z6h_A Catenin beta-1, beta-ca 100.0 7.6E-37 2.6E-41 326.0 37.7 446 54-527 10-486 (644)
15 3tpo_A Importin subunit alpha- 100.0 1.8E-36 6.1E-41 315.3 37.5 407 17-432 76-497 (529)
16 4b8j_A Importin subunit alpha- 100.0 5.4E-35 1.9E-39 305.0 37.2 407 16-433 73-497 (528)
17 1wa5_B Importin alpha subunit; 100.0 9.7E-35 3.3E-39 303.0 36.5 410 16-435 86-513 (530)
18 3l6x_A Catenin delta-1; cateni 100.0 1.3E-34 4.5E-39 295.9 34.7 378 101-499 47-489 (584)
19 3l6x_A Catenin delta-1; cateni 100.0 4.6E-34 1.6E-38 292.0 38.4 370 9-388 40-477 (584)
20 3nmz_A APC variant protein; pr 100.0 3.4E-35 1.2E-39 294.2 28.7 361 103-481 33-450 (458)
21 3nmz_A APC variant protein; pr 100.0 1E-34 3.5E-39 290.7 31.9 366 146-529 33-452 (458)
22 2jdq_A Importin alpha-1 subuni 100.0 6E-34 2.1E-38 291.1 37.7 406 59-481 21-443 (450)
23 1xm9_A Plakophilin 1; armadill 100.0 4E-34 1.4E-38 291.3 31.1 362 103-481 3-449 (457)
24 1xm9_A Plakophilin 1; armadill 100.0 4.2E-33 1.4E-37 283.8 35.5 363 17-389 2-451 (457)
25 3nmw_A APC variant protein; AR 100.0 2.3E-29 7.7E-34 244.9 26.4 266 203-481 47-334 (354)
26 3nmw_A APC variant protein; AR 100.0 2.8E-29 9.5E-34 244.3 26.3 272 244-530 46-337 (354)
27 4hxt_A De novo protein OR329; 100.0 8.3E-26 2.8E-30 211.8 29.8 243 273-530 2-244 (252)
28 3opb_A SWI5-dependent HO expre 100.0 2.1E-26 7.3E-31 238.2 27.3 470 14-510 252-759 (778)
29 4hxt_A De novo protein OR329; 100.0 6.9E-26 2.4E-30 212.3 28.2 241 230-482 2-242 (252)
30 4db8_A Armadillo-repeat protei 99.9 2.3E-25 8E-30 208.9 25.8 242 271-527 10-251 (252)
31 4db8_A Armadillo-repeat protei 99.9 2.3E-25 7.9E-30 208.9 25.2 239 230-481 12-251 (252)
32 3opb_A SWI5-dependent HO expre 99.9 5.1E-24 1.7E-28 220.6 33.9 434 75-529 230-730 (778)
33 1b3u_A Protein (protein phosph 99.9 2.6E-22 9E-27 211.9 35.1 461 16-527 86-548 (588)
34 4db6_A Armadillo repeat protei 99.9 2.9E-22 1E-26 182.1 25.1 201 270-481 9-209 (210)
35 4db6_A Armadillo repeat protei 99.9 1.7E-22 5.9E-27 183.7 23.1 200 184-387 10-209 (210)
36 1b3u_A Protein (protein phosph 99.9 1.5E-21 5E-26 206.2 33.1 459 17-527 126-587 (588)
37 4fdd_A Transportin-1; heat rep 99.9 6.8E-22 2.3E-26 217.7 28.9 483 16-529 173-744 (852)
38 1xqr_A HSPBP1 protein; armadil 99.9 3.8E-21 1.3E-25 182.0 23.3 227 203-432 55-287 (296)
39 4fdd_A Transportin-1; heat rep 99.9 3.6E-21 1.2E-25 212.0 26.1 485 16-529 127-701 (852)
40 3tt9_A Plakophilin-2; cell adh 99.9 1.3E-20 4.4E-25 170.5 20.2 199 231-434 9-231 (233)
41 1xqr_A HSPBP1 protein; armadil 99.9 7.7E-20 2.6E-24 173.0 24.6 228 245-480 55-286 (296)
42 3tt9_A Plakophilin-2; cell adh 99.9 1.7E-20 5.8E-25 169.7 17.5 195 146-345 9-230 (233)
43 3grl_A General vesicular trans 99.8 6.6E-17 2.2E-21 163.3 37.9 450 16-477 20-546 (651)
44 2vgl_B AP-2 complex subunit be 99.8 2.9E-18 1E-22 180.2 25.6 448 17-527 49-532 (591)
45 2vgl_B AP-2 complex subunit be 99.8 3.2E-17 1.1E-21 172.3 33.5 410 18-481 87-532 (591)
46 2bpt_A Importin beta-1 subunit 99.8 5.6E-17 1.9E-21 179.0 35.3 478 17-529 179-713 (861)
47 2bpt_A Importin beta-1 subunit 99.8 8E-17 2.7E-21 177.8 31.9 479 18-528 96-628 (861)
48 1qgr_A Protein (importin beta 99.8 2.6E-16 8.8E-21 174.0 33.4 479 17-527 172-722 (876)
49 1qgr_A Protein (importin beta 99.8 1.9E-16 6.4E-21 175.1 29.4 486 16-530 320-874 (876)
50 1u6g_C TIP120 protein, CAND1; 99.7 2.1E-15 7.1E-20 172.5 36.6 481 17-530 48-601 (1230)
51 1w63_A Adapter-related protein 99.7 1E-15 3.6E-20 161.3 31.3 440 18-527 108-577 (618)
52 3grl_A General vesicular trans 99.7 1.7E-15 5.8E-20 153.1 29.8 373 101-481 20-449 (651)
53 1w63_A Adapter-related protein 99.7 4.3E-15 1.5E-19 156.6 32.6 442 18-526 71-539 (618)
54 1u6g_C TIP120 protein, CAND1; 99.7 2.4E-15 8.1E-20 172.1 28.2 484 17-530 86-682 (1230)
55 1ibr_B P95, importin beta-1 su 99.7 2.9E-15 9.9E-20 152.9 25.8 387 63-481 7-437 (462)
56 1oyz_A Hypothetical protein YI 99.7 6.2E-15 2.1E-19 139.9 24.6 257 184-524 21-279 (280)
57 1ibr_B P95, importin beta-1 su 99.6 3E-14 1E-18 145.4 25.1 394 104-530 3-440 (462)
58 1oyz_A Hypothetical protein YI 99.6 4.1E-14 1.4E-18 134.3 23.6 256 101-428 22-278 (280)
59 3ltm_A Alpha-REP4; protein eng 99.5 3E-13 1E-17 122.5 18.6 190 271-530 17-206 (211)
60 3ltj_A Alpharep-4; protein eng 99.5 1.3E-12 4.3E-17 117.3 21.9 186 228-480 12-197 (201)
61 3ltj_A Alpharep-4; protein eng 99.5 3.3E-13 1.1E-17 121.2 17.7 189 270-528 11-199 (201)
62 3ltm_A Alpha-REP4; protein eng 99.5 1.7E-12 5.7E-17 117.5 22.2 186 229-481 18-203 (211)
63 2vgl_A Adaptor protein complex 99.5 7.2E-12 2.5E-16 131.6 30.0 442 18-526 112-588 (621)
64 2vgl_A Adaptor protein complex 99.5 1.5E-11 5.2E-16 129.1 32.2 436 18-527 75-550 (621)
65 4gmo_A Putative uncharacterize 99.3 7.9E-09 2.7E-13 109.9 36.5 218 16-240 33-286 (684)
66 4gmo_A Putative uncharacterize 99.0 2.4E-09 8.3E-14 113.9 13.3 196 274-480 35-257 (684)
67 4ady_A RPN2, 26S proteasome re 98.9 1.6E-07 5.4E-12 100.0 25.0 272 186-526 392-675 (963)
68 2qk2_A LP04448P; mini spindles 98.9 1.1E-07 3.8E-12 87.5 18.3 185 233-432 18-205 (242)
69 2qk2_A LP04448P; mini spindles 98.8 5.3E-08 1.8E-12 89.7 15.4 185 190-387 19-205 (242)
70 4ady_A RPN2, 26S proteasome re 98.8 4.1E-06 1.4E-10 89.3 30.6 310 146-525 393-717 (963)
71 3b2a_A TON_1937, putative unch 98.8 2.9E-07 1E-11 80.2 17.7 186 315-527 33-218 (265)
72 2db0_A 253AA long hypothetical 98.8 2.8E-06 9.4E-11 70.9 22.3 216 228-481 30-246 (253)
73 1wa5_C Importin alpha RE-expor 98.8 5.6E-05 1.9E-09 83.9 40.6 474 20-529 88-672 (960)
74 2db0_A 253AA long hypothetical 98.8 1.6E-06 5.6E-11 72.2 20.3 216 270-526 29-245 (253)
75 3tjz_B Coatomer subunit gamma; 98.7 1.3E-06 4.3E-11 83.8 20.2 251 230-532 68-321 (355)
76 2x1g_F Cadmus; transport prote 98.7 5.2E-06 1.8E-10 92.5 28.4 472 16-528 38-616 (971)
77 3b2a_A TON_1937, putative unch 98.7 2.2E-06 7.5E-11 74.7 18.3 224 272-524 32-258 (265)
78 2qk1_A Protein STU2; STU2P, XM 98.7 6.2E-07 2.1E-11 82.5 15.9 194 235-432 21-220 (249)
79 1te4_A Conserved protein MTH18 98.6 6.7E-09 2.3E-13 85.7 2.0 120 358-525 12-131 (131)
80 2qk1_A Protein STU2; STU2P, XM 98.6 7.8E-07 2.7E-11 81.9 14.7 191 192-386 22-219 (249)
81 2x1g_F Cadmus; transport prote 98.6 0.00013 4.6E-09 81.1 34.5 477 16-527 121-722 (971)
82 1wa5_C Importin alpha RE-expor 98.6 0.00013 4.5E-09 81.0 34.0 437 16-479 122-668 (960)
83 3tjz_B Coatomer subunit gamma; 98.5 1.6E-06 5.4E-11 83.1 14.2 274 189-522 71-348 (355)
84 1te4_A Conserved protein MTH18 98.5 4.6E-08 1.6E-12 80.6 2.6 121 314-479 11-131 (131)
85 1ho8_A Vacuolar ATP synthase s 98.5 6.9E-05 2.4E-09 73.5 25.0 343 101-480 76-475 (480)
86 2x19_B Importin-13; nuclear tr 98.4 0.00022 7.4E-09 79.4 31.9 468 16-528 56-600 (963)
87 3m1i_C Exportin-1; heat repeat 98.4 0.00041 1.4E-08 77.7 33.4 432 16-481 47-569 (1049)
88 2x19_B Importin-13; nuclear tr 98.4 0.00026 8.9E-09 78.7 31.6 452 26-529 34-558 (963)
89 1ho8_A Vacuolar ATP synthase s 98.4 0.00014 4.7E-09 71.4 23.9 320 15-344 75-476 (480)
90 3m1i_C Exportin-1; heat repeat 98.3 0.0012 4.1E-08 74.0 33.9 455 28-529 27-571 (1049)
91 4hat_C Exportin-1; heat repeat 98.3 0.0029 1E-07 69.9 35.4 467 16-530 47-621 (1023)
92 2iw3_A Elongation factor 3A; a 98.2 0.0011 3.9E-08 71.6 30.0 292 205-530 31-327 (986)
93 3ibv_A Exportin-T; karyopherin 98.1 0.0012 4.2E-08 72.7 27.3 438 16-481 39-566 (980)
94 4hat_C Exportin-1; heat repeat 98.0 0.0066 2.3E-07 67.1 31.5 467 18-529 17-571 (1023)
95 3dad_A FH1/FH2 domain-containi 98.0 0.00098 3.4E-08 62.1 19.8 191 276-471 121-326 (339)
96 3ibv_A Exportin-T; karyopherin 97.9 0.00074 2.5E-08 74.5 22.0 439 19-481 191-730 (980)
97 2iw3_A Elongation factor 3A; a 97.9 0.0016 5.6E-08 70.4 23.9 261 188-480 56-323 (986)
98 3dad_A FH1/FH2 domain-containi 97.9 0.00089 3E-08 62.4 17.7 185 190-377 122-326 (339)
99 1lrv_A LRV, leucine-rich repea 97.6 2.7E-05 9.2E-10 70.7 2.8 45 456-523 198-242 (244)
100 3gjx_A Exportin-1; transport, 97.5 0.2 6.9E-06 55.3 35.3 460 17-530 28-598 (1073)
101 4ffb_C Protein STU2; tubulin f 97.4 0.013 4.3E-07 54.6 18.8 189 232-432 12-212 (278)
102 4ffb_C Protein STU2; tubulin f 97.4 0.01 3.5E-07 55.2 17.9 187 278-481 14-212 (278)
103 1lrv_A LRV, leucine-rich repea 97.3 0.00022 7.6E-09 64.6 4.7 43 235-296 79-121 (244)
104 3gjx_A Exportin-1; transport, 97.2 0.33 1.1E-05 53.6 30.5 426 15-481 58-595 (1073)
105 2of3_A ZYG-9; multifunctional 97.2 0.0059 2E-07 55.6 13.3 134 201-347 100-239 (266)
106 2of3_A ZYG-9; multifunctional 97.2 0.015 5.2E-07 52.9 15.9 168 202-386 60-235 (266)
107 3oc3_A Helicase MOT1, MOT1; re 97.2 0.015 5.1E-07 57.7 16.5 244 231-522 175-431 (800)
108 3oc3_A Helicase MOT1, MOT1; re 97.1 0.0049 1.7E-07 61.0 12.0 252 106-427 178-431 (800)
109 3l9t_A Putative uncharacterize 96.9 0.024 8E-07 50.1 14.1 147 230-399 71-219 (240)
110 3c2g_A SYS-1 protein; beta-cat 95.9 0.24 8.3E-06 45.9 14.7 127 214-343 268-409 (619)
111 1lsh_A Lipovitellin (LV-1N, LV 95.9 1.1 3.7E-05 49.8 23.2 169 231-436 392-580 (1056)
112 3l9t_A Putative uncharacterize 95.8 0.11 3.7E-06 45.9 11.9 140 17-180 71-214 (240)
113 3ebb_A Phospholipase A2-activa 95.6 0.75 2.6E-05 42.8 17.6 178 145-326 103-287 (304)
114 2fv2_A RCD1 required for cell 95.4 1.4 4.7E-05 39.3 17.3 185 202-388 15-225 (268)
115 3u0r_A Apoptosis inhibitor 5; 95.3 0.32 1.1E-05 47.6 13.8 97 231-343 66-162 (507)
116 3u0r_A Apoptosis inhibitor 5; 95.2 2.5 8.7E-05 41.4 22.0 125 241-387 39-163 (507)
117 1upk_A MO25 protein; transfera 95.0 2.3 7.9E-05 39.6 22.2 203 180-388 72-284 (341)
118 3eg5_B Protein diaphanous homo 94.5 3.6 0.00012 39.7 19.3 127 218-346 98-248 (383)
119 2f31_A Diaphanous protein homo 94.5 2.5 8.5E-05 37.6 17.6 127 218-346 32-182 (233)
120 1upk_A MO25 protein; transfera 94.2 3.6 0.00012 38.3 23.0 203 225-432 73-283 (341)
121 2fv2_A RCD1 required for cell 93.9 2.4 8.2E-05 37.8 15.0 148 291-441 74-232 (268)
122 1lsh_A Lipovitellin (LV-1N, LV 93.5 0.75 2.6E-05 51.1 13.9 136 316-480 392-542 (1056)
123 3eg5_B Protein diaphanous homo 93.1 6.1 0.00021 38.1 18.0 121 269-391 106-250 (383)
124 3a6p_A Exportin-5; exportin-5, 92.8 16 0.00053 41.3 31.2 270 18-303 46-381 (1204)
125 3c2g_A SYS-1 protein; beta-cat 91.8 7.5 0.00026 36.3 15.5 157 298-508 267-448 (619)
126 3a6p_A Exportin-5; exportin-5, 91.7 21 0.0007 40.3 23.1 218 195-434 20-278 (1204)
127 2f31_A Diaphanous protein homo 91.6 6.5 0.00022 34.8 15.2 147 185-331 42-215 (233)
128 2bnx_A Diaphanous protein homo 90.2 14 0.00047 35.6 18.9 157 218-377 36-222 (386)
129 3ebb_A Phospholipase A2-activa 89.3 13 0.00046 34.3 19.9 113 320-436 152-267 (304)
130 2bnx_A Diaphanous protein homo 89.3 8.6 0.00029 37.1 14.7 105 286-391 71-188 (386)
131 3s4w_B Protein FACD2, fanconi 87.3 42 0.0015 37.6 22.9 260 108-391 163-471 (1323)
132 3o2t_A Symplekin; heat repeat, 86.0 25 0.00085 33.7 15.9 160 229-397 62-266 (386)
133 3gs3_A Symplekin, LD45768P; he 84.5 22 0.00077 31.8 16.6 108 230-343 53-172 (257)
134 3g2s_A C-terminal fragment of 83.1 3.8 0.00013 33.4 7.3 71 403-480 49-125 (149)
135 1mhq_A ADP-ribosylation factor 79.2 9.8 0.00033 30.9 8.5 71 403-480 39-115 (148)
136 2b6c_A Hypothetical protein EF 79.2 32 0.0011 30.0 12.6 140 233-397 58-198 (220)
137 1mhq_A ADP-ribosylation factor 79.0 7.6 0.00026 31.6 7.8 72 315-386 38-115 (148)
138 3jxy_A Alkylpurine DNA glycosy 77.9 27 0.00092 30.8 11.8 142 233-399 64-207 (232)
139 3ldz_A STAM-1, signal transduc 77.0 5.8 0.0002 32.0 6.4 72 315-386 42-113 (140)
140 3g2s_A C-terminal fragment of 77.0 8.9 0.00031 31.2 7.6 72 315-386 48-125 (149)
141 1x5b_A Signal transducing adap 76.6 7.5 0.00026 32.2 7.2 94 284-386 30-124 (163)
142 3fga_B Serine/threonine-protei 76.5 56 0.0019 31.4 18.1 234 269-532 125-371 (403)
143 3o2t_A Symplekin; heat repeat, 76.3 55 0.0019 31.3 14.1 128 332-480 42-182 (386)
144 3ldz_A STAM-1, signal transduc 75.2 6.4 0.00022 31.7 6.2 71 403-480 43-113 (140)
145 1x5b_A Signal transducing adap 73.5 13 0.00044 30.8 7.8 71 403-480 53-124 (163)
146 1juq_A ADP-ribosylation factor 71.1 18 0.00062 30.2 8.2 71 403-480 51-127 (171)
147 1vsy_5 Proteasome activator BL 70.8 4.5 0.00015 44.4 5.6 189 274-482 761-967 (997)
148 1juq_A ADP-ribosylation factor 70.7 11 0.00038 31.4 6.9 94 284-386 28-127 (171)
149 3gs3_A Symplekin, LD45768P; he 62.6 86 0.0029 28.0 18.0 133 330-480 30-172 (257)
150 2jak_A Serine/threonine-protei 59.8 1.1E+02 0.0037 29.3 12.1 187 269-473 170-359 (392)
151 3zyq_A Hepatocyte growth facto 59.2 21 0.00072 31.3 6.7 94 284-386 23-117 (226)
152 3gae_A Protein DOA1; UFD3, CDC 59.1 25 0.00086 31.4 7.4 100 201-304 103-219 (253)
153 1elk_A Target of MYB1; superhe 59.0 35 0.0012 27.9 7.7 72 403-480 54-129 (157)
154 1vsy_5 Proteasome activator BL 58.2 1.1E+02 0.0038 33.5 13.5 217 16-257 132-363 (997)
155 1elk_A Target of MYB1; superhe 55.1 38 0.0013 27.6 7.3 94 284-386 31-129 (157)
156 3pst_A Protein DOA1; protein d 52.9 78 0.0027 30.6 9.9 99 200-303 274-390 (425)
157 3zyq_A Hepatocyte growth facto 50.6 25 0.00086 30.8 5.8 72 360-432 47-118 (226)
158 1dvp_A HRS, hepatocyte growth 49.8 31 0.0011 30.1 6.2 72 315-386 42-114 (220)
159 3qml_C Protein SLS1, nucleotid 49.8 1.6E+02 0.0053 27.0 12.2 131 162-300 46-187 (315)
160 4atg_A TAF6; transcription, TF 49.2 75 0.0026 27.0 8.2 110 230-342 40-160 (196)
161 3s4w_B Protein FACD2, fanconi 48.4 3.4E+02 0.012 30.6 21.1 105 17-128 157-269 (1323)
162 1dvp_A HRS, hepatocyte growth 46.8 72 0.0025 27.6 8.2 71 403-480 43-114 (220)
163 3gae_A Protein DOA1; UFD3, CDC 46.5 85 0.0029 27.9 8.7 131 375-528 71-218 (253)
164 3l3f_X Protein DOA1, DOA1/UFD3 45.8 78 0.0027 29.9 8.6 99 200-303 211-327 (362)
165 3qml_C Protein SLS1, nucleotid 37.5 2.4E+02 0.0083 25.8 13.2 135 331-480 44-188 (315)
166 2npp_B PP2A, B subunit, serine 35.3 3.2E+02 0.011 26.6 21.9 232 269-530 158-402 (449)
167 1vdy_A Hypothetical protein (R 32.6 1E+02 0.0034 24.6 6.0 74 452-528 49-131 (140)
168 2qzg_A Conserved uncharacteriz 31.2 1.5E+02 0.0052 21.5 6.7 57 455-517 21-79 (94)
169 2qsb_A UPF0147 protein TA0600; 30.4 1.5E+02 0.0052 21.3 6.3 56 456-517 18-75 (89)
170 3l3f_X Protein DOA1, DOA1/UFD3 30.0 2.9E+02 0.0099 26.0 9.7 131 375-528 180-327 (362)
171 3rru_A TOM1L1 protein; structu 29.6 94 0.0032 25.2 5.5 73 403-481 54-130 (152)
172 3pst_A Protein DOA1; protein d 28.4 4.1E+02 0.014 25.6 12.0 131 375-528 243-390 (425)
173 2b6c_A Hypothetical protein EF 25.3 3.2E+02 0.011 23.4 9.4 27 455-481 162-188 (220)
174 3rru_A TOM1L1 protein; structu 25.1 1.8E+02 0.006 23.5 6.4 96 284-388 31-131 (152)
175 4atg_A TAF6; transcription, TF 22.8 3.5E+02 0.012 22.9 10.3 113 403-529 41-161 (196)
176 1sz9_A PCF11 protein; RNA poly 22.3 2.9E+02 0.01 21.9 7.6 67 403-477 44-110 (144)
No 1
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.4e-43 Score=368.60 Aligned_cols=487 Identities=12% Similarity=0.121 Sum_probs=404.7
Q ss_pred ccccccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhc-CchHHHHHhhc-C-ChHHHHHHHHHHHHHhcCC
Q 009514 12 DFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA-GVLKRLTSLLG-G-SLIQRDASLESIATIFKNN 88 (533)
Q Consensus 12 ~l~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~-g~i~~L~~lL~-~-~~~v~~~al~aL~~l~~~~ 88 (533)
..+..|+++.|+.+|+++++.+++.|+.+|.+++...+++..+... |++++|+++|. + ++.++..++.+|.+++.+.
T Consensus 12 ~~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 12 AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 91 (529)
T ss_dssp -----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc
Confidence 3456799999999999999999999999999999888888777754 89999999996 4 6789999999999998764
Q ss_pred hhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHH
Q 009514 89 PEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFA 167 (533)
Q Consensus 89 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~ 167 (533)
+....+.. .++++.++.+++++++.+|..|+.+|.+++...+. .+..+.+.|++|.|++++++ +..++..++.+
T Consensus 92 -~~~~~i~~---~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~ 166 (529)
T 1jdh_A 92 -EGLLAIFK---SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 166 (529)
T ss_dssp -HHHHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred -hhHHHHHH---cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 45555543 58999999999999999999999999999987643 35566789999999999985 45677888899
Q ss_pred HHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHH
Q 009514 168 FSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVR 247 (533)
Q Consensus 168 L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~ 247 (533)
|.+++.++++.+..+.+.|+++.|+++|.+.+ +...++.+..+|.+++. .+..+..+.+.|+++.++++++++++.++
T Consensus 167 L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll~~~~~~~~ 244 (529)
T 1jdh_A 167 LQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLV 244 (529)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTTTSSCHHHH
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhCCChHHH
Confidence 99999988888888999999999999998773 56677889999999986 45778889999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-
Q 009514 248 SAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS- 326 (533)
Q Consensus 248 ~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~- 326 (533)
..++++|.+++...+.. ....+++|.|++++.+++++++..|+++|+|++......+..+.+.|+++.|++++.+
T Consensus 245 ~~a~~~L~~l~~~~~~~----~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~ 320 (529)
T 1jdh_A 245 QNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 320 (529)
T ss_dssp HHHHHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChhh----HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc
Confidence 99999999999874322 1345889999999999999999999999999998777788899999999999999975
Q ss_pred -CCHHHHHHHHHHHHHhhccCCh--HhHHHHHHhhcHHHHHhhhCCCC-hhHHHHHHHHHHHhhcCCcchHHHHHhhcCc
Q 009514 327 -MDSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPE-PSVQEQALALVRNLVDGRINSVEYIFAEDGI 402 (533)
Q Consensus 327 -~~~~~~~~al~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~ 402 (533)
.++.++..++++|+|++.+.+. ..+..+.+.++++.++++|.+++ +.++..++|+|+|++.+.. ....+.+.+
T Consensus 321 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~-- 397 (529)
T 1jdh_A 321 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQG-- 397 (529)
T ss_dssp TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTT--
T ss_pred CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcC--
Confidence 3478999999999999875432 25778889999999999999876 6999999999999998654 346666666
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHH----------------------hccCChhhHHHHHHHhhHhhhhhhHHHHHHh
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGN----------------------VATGKESHKEAVMDQLLLRAENKAQSCIIKF 460 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~----------------------l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 460 (533)
+++.|..+|.+ ++++++..++|+++| ++. .++.+..+.+ .++++.++.+
T Consensus 398 ~i~~L~~ll~~-~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~-~~~~~~~l~~-------~~~v~~l~~l 468 (529)
T 1jdh_A 398 AIPRLVQLLVR-AHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-DVHNRIVIRG-------LNTIPLFVQL 468 (529)
T ss_dssp HHHHHHHHHHH-HHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT-SHHHHHHHHH-------TTCHHHHHHG
T ss_pred CHHHHHHHHHH-HhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc-CchHHHHHhc-------cCCccHHHHH
Confidence 78999888886 667777777776666 432 2333344443 7899999999
Q ss_pred hccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514 461 LQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 461 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~ 526 (533)
+.+++++++..|+++|.+++. .++....+.+.|+++.|.+++++++++++++|.++|.+|+
T Consensus 469 l~~~~~~v~~~a~~~l~~l~~-----~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l~ 529 (529)
T 1jdh_A 469 LYSPIENIQRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529 (529)
T ss_dssp GGCSCHHHHHHHHHHHHHHTT-----SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHC
T ss_pred HcCCchHHHHHHHHHHHHHhc-----CHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999984 3567788999999999999999999999999999999884
No 2
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-41 Score=363.02 Aligned_cols=492 Identities=13% Similarity=0.118 Sum_probs=413.3
Q ss_pred cccccccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhc-CchHHHHHhhcC--ChHHHHHHHHHHHHHhcC
Q 009514 11 YDFLQEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA-GVLKRLTSLLGG--SLIQRDASLESIATIFKN 87 (533)
Q Consensus 11 ~~l~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~-g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~ 87 (533)
+..+..|+++.|+.+|+++++.+++.|+.+|.+++....++..+... |+++.|+++|.+ +..++..|+.+|.+++.+
T Consensus 8 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~ 87 (644)
T 2z6h_A 8 DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 87 (644)
T ss_dssp ----CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC
Confidence 34567899999999999999999999999999999988888777754 899999999974 678999999999999876
Q ss_pred ChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHH
Q 009514 88 NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASF 166 (533)
Q Consensus 88 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~ 166 (533)
.. ....+.. .+.++.++.+++++++.+|..|+.+|.+++...+. .+..+.+.|++|.|++++++ +..++..++.
T Consensus 88 ~~-~~~~i~~---~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~-~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~ 162 (644)
T 2z6h_A 88 RE-GLLAIFK---SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTD 162 (644)
T ss_dssp HH-HHHHHHT---TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred hh-hHHHHHH---cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch-hHHHHHHCCChHHHHHHHCcCCHHHHHHHHH
Confidence 44 5455543 58999999999999999999999999999987543 45556788999999999985 4456777788
Q ss_pred HHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHH
Q 009514 167 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDV 246 (533)
Q Consensus 167 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v 246 (533)
+|.+++..+++.+..+.+.|+++.|+++|.+.+ ....++.++.+|.+++. .+..+..+++.|+++.+++++++++..+
T Consensus 163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~ 240 (644)
T 2z6h_A 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRL 240 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTTTCSCHHH
T ss_pred HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHHhcCCHHH
Confidence 999999888888888999999999999998763 46678899999999986 4678889999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC
Q 009514 247 RSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS 326 (533)
Q Consensus 247 ~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~ 326 (533)
+..++++|.++++..+.. ....++++.|++++++++++++..|+++|+|++......+..+.+.|+++.|++++.+
T Consensus 241 ~~~a~~~L~nL~~~~~~~----~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 241 VQNCLWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HHHHHHHHHHHGGGCTTC----CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhh----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHc
Confidence 999999999999864321 2335889999999999999999999999999998777788899999999999999986
Q ss_pred C--CHHHHHHHHHHHHHhhccCCh--HhHHHHHHhhcHHHHHhhhCCCC-hhHHHHHHHHHHHhhcCCcchHHHHHhhcC
Q 009514 327 M--DSTIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPE-PSVQEQALALVRNLVDGRINSVEYIFAEDG 401 (533)
Q Consensus 327 ~--~~~~~~~al~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~ 401 (533)
. .+.++..++++|+|++...+. ..+..+.+.++++.|+++|.+++ +.++..++|+|+|++.+... ...+++.+
T Consensus 317 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~- 394 (644)
T 2z6h_A 317 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQG- 394 (644)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTT-
T ss_pred cCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcC-
Confidence 3 379999999999999864332 24556888899999999999875 79999999999999987543 46677766
Q ss_pred chHHHHHHHhccC---------------------CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHh
Q 009514 402 IILDAVGRQLRIA---------------------SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKF 460 (533)
Q Consensus 402 ~~~~~L~~~L~~~---------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ 460 (533)
+++.|..+|.+. .+.+++..++.+|.+++.. +..+..+.+ .++++.|+.+
T Consensus 395 -~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~-------~~~i~~Lv~l 465 (644)
T 2z6h_A 395 -AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD-VHNRIVIRG-------LNTIPLFVQL 465 (644)
T ss_dssp -HHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTS-HHHHHHHHH-------TTCHHHHHHH
T ss_pred -CHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcC-HHHHHHHHh-------CCcHHHHHHH
Confidence 788888887651 1345667778888888754 344555544 7899999999
Q ss_pred hccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514 461 LQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 461 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~ 529 (533)
|.+++.+++..|+++|.+++. .++....+.+.|+++.|.++++++++++++.|.+||.++.+..
T Consensus 466 L~~~~~~v~~~a~~aL~~l~~-----~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 466 LYSPIENIQRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHHT-----SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred HcCCCHHHHHHHHHHHHHHHc-----CHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999999984 3567788999999999999999999999999999999997643
No 3
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=3.8e-42 Score=362.86 Aligned_cols=485 Identities=13% Similarity=0.117 Sum_probs=387.6
Q ss_pred HHhhhcCCCcchhHHHHHHHHHhhcCchh--HHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccc
Q 009514 22 LLSLLNNESENVSGLGASIISHSCKTSLE--QKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGP 98 (533)
Q Consensus 22 L~~lL~~~~~~v~~~a~~~l~~~~~~~~~--~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~ 98 (533)
+-..+...+.+-.-.|+.++..+...+.. ...+..+|++++++.++.+ +..+++.|++++++++.+ ++.+..+.+
T Consensus 252 ~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~- 329 (810)
T 3now_A 252 IKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK-KDKAKALCE- 329 (810)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHH-
T ss_pred HHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHH-
Confidence 33444556666667788888887665544 3344588999999999998 668899999999998765 666554443
Q ss_pred cCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhH----hhhHHHHHHhcCC---CCchhhhHHHHHHhh
Q 009514 99 DTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK----TKLINNLLELLDD---PGRVGDEASFAFSSL 171 (533)
Q Consensus 99 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----~~~i~~L~~ll~~---~~~~~~~a~~~L~~l 171 (533)
.+++.+..++++++..+|..|+.+|+++.............. ...++.++++|.+ +.+++..|+++|.++
T Consensus 330 ---~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayL 406 (810)
T 3now_A 330 ---QGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYL 406 (810)
T ss_dssp ---HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHH
T ss_pred ---cCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999999975321101111222 3457778888873 467899999999999
Q ss_pred hcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch-----------------------------hh
Q 009514 172 IAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE-----------------------------CC 222 (533)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~-----------------------------~~ 222 (533)
+.+.+.......+.|++|.|+++|.+. ++.++..++++|++++...+ ..
T Consensus 407 S~~~~vk~~lv~d~g~Ip~LV~LL~s~--d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v 484 (810)
T 3now_A 407 TLDAECKEKLIEDKASIHALMDLARGG--NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFI 484 (810)
T ss_dssp TTSHHHHHHHHHCHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHH
T ss_pred hCCcHHHHHHHHccchHHHHHHHhCCC--ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHH
Confidence 876655544555689999999999865 47789999999999997432 12
Q ss_pred h---HhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 009514 223 R---SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISN 299 (533)
Q Consensus 223 ~---~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~n 299 (533)
+ +.+++.|++|.|+++++++++.+|..|+|+|.|++.. +..+.. +.+.|++|+|+.+|+++++..+..|+|+|+|
T Consensus 485 ~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~-Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~n 562 (810)
T 3now_A 485 NKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGK-VVQEGGVKALLRMALEGTEKGKRHATQALAR 562 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHH-HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHH-HHHCCCHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 2 5677899999999999999999999999999999976 444544 8899999999999999999999999999999
Q ss_pred HhcCCchhHHH--HHHhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHH
Q 009514 300 IVVDFTTRRST--FIRLGGVKLLVQLSKSMD-STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQE 376 (533)
Q Consensus 300 l~~~~~~~~~~--~~~~~~i~~L~~ll~~~~-~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~ 376 (533)
++....+.... ....|++++|++++.++. ...+..|+++|.||+.+ +++.++.+++.|+++.|+.++.++++.+++
T Consensus 563 L~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~-~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~ 641 (810)
T 3now_A 563 IGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM-NESVRQRIIKEQGVSKIEYYLMEDHLYLTR 641 (810)
T ss_dssp HHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHSCCTTHHH
T ss_pred HhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCCHHHHHHHHcCCCHHHHH
Confidence 98643332100 012468999999998653 44567899999999875 357888999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHH
Q 009514 377 QALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSC 456 (533)
Q Consensus 377 ~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (533)
.|+++|+|++.+.+ ....+....| .++.|+.++.+ ++.+++..|+|+|+|++.+++...+.+++ ..+++|.
T Consensus 642 ~A~~~L~NLa~~~~-~~~~~v~~~g-~l~~Lv~LL~s-~d~~vq~~Aa~ALanLt~~s~~~~~~ii~------~~g~I~~ 712 (810)
T 3now_A 642 AAAQCLCNLVMSED-VIKMFEGNND-RVKFLALLCED-EDEETATACAGALAIITSVSVKCCEKILA------IASWLDI 712 (810)
T ss_dssp HHHHHHHHHTTSHH-HHHHHHSSSS-HHHHHHHGGGC-SSHHHHHHHHHHHHHHHHHCHHHHHHHHT------STTHHHH
T ss_pred HHHHHHHHHhCChH-HHHHHHhccC-cHHHHHHHhcC-CCHHHHHHHHHHHHHHhCCCHHHHHHHHH------HcCCHHH
Confidence 99999999998654 4445553223 78999998888 88999999999999999877777888875 2689999
Q ss_pred HHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCC---CCcHHHHHHHHHHHHhhhc
Q 009514 457 IIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP---CLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 457 lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~---~~~v~~~a~~aL~~~~~~~ 529 (533)
|+.+|.+++.++++.|+|+|.|++. ++.++...+.+.|++++|.++++++ +..+.+.|..||.++.+++
T Consensus 713 Lv~LL~s~d~~vq~~A~~aL~NL~~----~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g 784 (810)
T 3now_A 713 LHTLIANPSPAVQHRGIVIILNMIN----AGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR 784 (810)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHT----TCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHh----CCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999996 4567899999999999999999654 5678889999999998765
No 4
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=2.6e-42 Score=364.16 Aligned_cols=446 Identities=14% Similarity=0.141 Sum_probs=373.4
Q ss_pred cccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCCh-hhh
Q 009514 15 QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNP-EVV 92 (533)
Q Consensus 15 ~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~-~~~ 92 (533)
.+|+++.|+.+++++++.+|+.|+.++.++|.....|..+.+.|+ |+|..++.+ ++.+|..|+.+|+++..... +..
T Consensus 288 ~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~ 366 (810)
T 3now_A 288 REGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAA 366 (810)
T ss_dssp TTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTS
T ss_pred ccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCcc
Confidence 789999999999999999999999999999999888999999876 999999986 66899999999999974321 111
Q ss_pred -hhhccccCcccHHHHHHHHhcC--ChhhHHHHHHHHHHhhhcCCCcchhhhh-HhhhHHHHHHhcC-CCCchhhhHHHH
Q 009514 93 -SQFVGPDTGRTLSCIIEIVKDR--FARTRLLASLCLIVIRNASPCYLQDVGI-KTKLINNLLELLD-DPGRVGDEASFA 167 (533)
Q Consensus 93 -~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~ll~-~~~~~~~~a~~~ 167 (533)
..+..-.....++.+.+++.++ +++++..|+++|.+++...+. +..++ +.|++|.|+++++ ++..++..++++
T Consensus 367 ~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~v--k~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~ 444 (810)
T 3now_A 367 IRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAEC--KEKLIEDKASIHALMDLARGGNQSCLYGVVTT 444 (810)
T ss_dssp CCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHH--HHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred ccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHH--HHHHHHccchHHHHHHHhCCCChHHHHHHHHH
Confidence 1111000012355677888887 899999999999999986532 34444 5799999999998 457889999999
Q ss_pred HHhhhcCCH-----------------------------HHH---HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHh
Q 009514 168 FSSLIAEKE-----------------------------DMQ---KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADM 215 (533)
Q Consensus 168 L~~l~~~~~-----------------------------~~~---~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l 215 (533)
|.|++.+.+ ..+ +.+++.|++|.|+++|.++ ++.+++.|+|+|+++
T Consensus 445 L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~--s~~vqe~Aa~aL~NL 522 (810)
T 3now_A 445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTE--SHNSQELIARVLNAV 522 (810)
T ss_dssp HHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCC--CHHHHHHHHHHHHHH
T ss_pred HHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence 999997541 233 5678999999999988875 488999999999999
Q ss_pred hccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhh---hhcCcHHHHHHhhcCC-CHHHHH
Q 009514 216 CSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF---MNETIVIPLVRLLDDT-STAVQV 291 (533)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~---~~~~~i~~Lv~lL~~~-~~~v~~ 291 (533)
+.+ +++|..+++.|++|+|+.+|.++++..+..|+++|.+++.+... ... + ...+++|+|+.+|.++ +...+.
T Consensus 523 A~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p-~~~-~~~~~~~~aIppLv~LL~~~~~~l~~~ 599 (810)
T 3now_A 523 CGL-KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP-EVS-FSGQRSLDVIRPLLNLLQQDCTALENF 599 (810)
T ss_dssp HTS-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-HHH-TTTHHHHHTHHHHHHTTSTTSCHHHHH
T ss_pred cCC-HHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh-hhh-hcchhhhcHHHHHHHHhCCCCcHHHHH
Confidence 975 56999999999999999999999999999999999999876322 111 1 1246899999999865 555667
Q ss_pred HHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHH-hhcHHHHHhhhCCC
Q 009514 292 AALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM-ELTASLLASLICDP 370 (533)
Q Consensus 292 ~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~-~~~~~~l~~lL~~~ 370 (533)
.|+++|.||+..++..++.+++.|+++.|+.++.++++.++..|+++++|++. +++.+..+.+ .+.++.|+.++.++
T Consensus 600 eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~Lv~LL~s~ 677 (810)
T 3now_A 600 ESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFLALLCEDE 677 (810)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHHHHGGGCS
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHHHHHhcCC
Confidence 99999999998877888899999999999999999999999999999999987 3456666665 67899999999999
Q ss_pred ChhHHHHHHHHHHHhhcCCcchHHHHHh-hcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhh
Q 009514 371 EPSVQEQALALVRNLVDGRINSVEYIFA-EDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRA 449 (533)
Q Consensus 371 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 449 (533)
+.++|..|+|+|+|++.+++..++.++. .+ .++.|+.+|.+ ++.+++..|+|++.|++.++.++...+.+
T Consensus 678 d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g--~I~~Lv~LL~s-~d~~vq~~A~~aL~NL~~~s~e~~~~l~e------ 748 (810)
T 3now_A 678 DEETATACAGALAIITSVSVKCCEKILAIAS--WLDILHTLIAN-PSPAVQHRGIVIILNMINAGEEIAKKLFE------ 748 (810)
T ss_dssp SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTT--HHHHHHHHHTC-SSHHHHHHHHHHHHHHHTTCHHHHHHHHT------
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC--CHHHHHHHHCC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHH------
Confidence 9999999999999999977778888888 55 78999999988 89999999999999999877777777775
Q ss_pred hhhhHHHHHHhhccC---ChhHHHHHHHHHHhhc
Q 009514 450 ENKAQSCIIKFLQSN---DSRLRTAAVWAVLNLT 480 (533)
Q Consensus 450 ~~~~~~~lv~~L~~~---~~~v~~~a~~~L~~l~ 480 (533)
.|+++.|..+++.+ +.++.+.|..+|.++.
T Consensus 749 -~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll 781 (810)
T 3now_A 749 -TDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781 (810)
T ss_dssp -STHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence 89999999999765 6789999999998887
No 5
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.3e-40 Score=344.38 Aligned_cols=412 Identities=16% Similarity=0.188 Sum_probs=359.9
Q ss_pred ccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhhhHHHHHHhhhcCCHHHH
Q 009514 102 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQ 179 (533)
Q Consensus 102 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~~ 179 (533)
..++.+++.++++++..|..|+..++.+.....+...+.+++.|++|.|+++|+. ++.++.+|+++|++++.++++.+
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 3589999999999999999999999988765555557889999999999999973 45789999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCC-----HHHHHHHHHHH
Q 009514 180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-----SDVRSAACMCL 254 (533)
Q Consensus 180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~-----~~v~~~a~~~L 254 (533)
+.+++.|++|.|+++|.++ ++.+++.|+++|++++.+++..|..+.+.|+++.++.++...+ ..++..+++++
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~--~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L 214 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 214 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHH
Confidence 9999999999999999775 4889999999999999988899999999999999999998654 35678899999
Q ss_pred HHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHH
Q 009514 255 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLN 334 (533)
Q Consensus 255 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~ 334 (533)
.++++........ ....+++|.|++++.+++++++..|+|+|++++.+.....+.+.+.|+++.|+.++.+++..++..
T Consensus 215 ~nl~~~~~~~~~~-~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 293 (510)
T 3ul1_B 215 SNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP 293 (510)
T ss_dssp HHHHCCCSSCCCH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred HHHhhcccchhHH-HHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhH
Confidence 9999874333322 345688999999999999999999999999999887777778889999999999999999999999
Q ss_pred HHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccC
Q 009514 335 ALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA 414 (533)
Q Consensus 335 al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~ 414 (533)
++++|+|++.+ ++..+..+++.++++.|+.+|.+++.+++..++|+|+|++.++++....+++.+ +++.|..++.+
T Consensus 294 al~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g--~i~~Lv~lL~~- 369 (510)
T 3ul1_B 294 ALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG--LVPFLVGVLSK- 369 (510)
T ss_dssp HHHHHHHHTTS-CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHHHS-
T ss_pred HHHHHHHhhcC-CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcC--CHHHHHHHHcC-
Confidence 99999999874 456788899999999999999999999999999999999999888888888887 88999999988
Q ss_pred CchhHHHHHHHHHHHhcc-CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCC--CCCCcHHHH
Q 009514 415 SKAEIEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS--SSPGSSGRL 491 (533)
Q Consensus 415 ~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~~ 491 (533)
++..++..|+|+|.|++. ++.+++..+++ .|+++.|+.+|+++|++++..++++|.++... ..+......
T Consensus 370 ~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~-------~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~ 442 (510)
T 3ul1_B 370 ADFKTQKEAAWAITNYTSGGTVEQIVYLVH-------CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLS 442 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHccCCHHHHHHHHH-------CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHH
Confidence 889999999999999997 44555666665 89999999999999999999999999998741 112334445
Q ss_pred HHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 492 VKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 492 ~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
..+.+.|+++.|..|..+++.++.++|...|.+++.
T Consensus 443 ~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 478 (510)
T 3ul1_B 443 IMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 478 (510)
T ss_dssp HHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 678899999999999998999999999999988764
No 6
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=2.1e-40 Score=358.73 Aligned_cols=489 Identities=13% Similarity=0.121 Sum_probs=411.3
Q ss_pred cccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhc-CchHHHHHhhc-C-ChHHHHHHHHHHHHHhcCChhh
Q 009514 15 QEENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDA-GVLKRLTSLLG-G-SLIQRDASLESIATIFKNNPEV 91 (533)
Q Consensus 15 ~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~-g~i~~L~~lL~-~-~~~v~~~al~aL~~l~~~~~~~ 91 (533)
..|+++.|+.+|+++++.+|+.|+.+|.+++....++..+.+. |+++.|+++|. + +..+|..|+.+|.+++... +.
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~-~~ 226 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EG 226 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH-HH
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hh
Confidence 3789999999999999999999999999999888777777754 89999999997 4 6789999999999998764 44
Q ss_pred hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHh
Q 009514 92 VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSS 170 (533)
Q Consensus 92 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~ 170 (533)
...+.. .++++.++.+++++++.+|..|+.+|.+++...+. .+..+...|++|.|++++.+ +..++..++.+|.+
T Consensus 227 ~~~i~~---~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~ 302 (780)
T 2z6g_A 227 LLAIFK---SGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI 302 (780)
T ss_dssp HHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHH---cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445543 57899999999999999999999999999987543 34556678999999999985 45678888899999
Q ss_pred hhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHH
Q 009514 171 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAA 250 (533)
Q Consensus 171 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a 250 (533)
++..+++.+..+.+.|+++.|+++|.+.+ +...++.+..+|.+++. .+..+..+++.|+++.|+.++.+.+..++..+
T Consensus 303 La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a 380 (780)
T 2z6g_A 303 LAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 380 (780)
T ss_dssp HHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCSCHHHHHHH
T ss_pred HhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCCchHHHHHH
Confidence 99888888888889999999999988763 45667788999999986 45678889999999999999999999999999
Q ss_pred HHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-C-C
Q 009514 251 CMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-M-D 328 (533)
Q Consensus 251 ~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~-~ 328 (533)
+++|.+++...... ....++++.|+++|++++++++..|+++|++++......+..+.+.|+++.|++++.+ + .
T Consensus 381 ~~~L~~L~~~~~~~----~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~ 456 (780)
T 2z6g_A 381 LWTLRNLSDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDR 456 (780)
T ss_dssp HHHHHHHHTTCTTC----SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccchhh----hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCH
Confidence 99999999764321 2346789999999999999999999999999998877788889999999999999975 3 3
Q ss_pred HHHHHHHHHHHHHhhccCCh--HhHHHHHHhhcHHHHHhhhCCCCh-hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHH
Q 009514 329 STIRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPEP-SVQEQALALVRNLVDGRINSVEYIFAEDGIILD 405 (533)
Q Consensus 329 ~~~~~~al~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~ 405 (533)
+.++..|+++|+|++..... ..+..+...++++.|+++|.+++. .++..++|+|+|++.+.. ....+.+.+ +++
T Consensus 457 ~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~~~g--~i~ 533 (780)
T 2z6g_A 457 EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQG--AIP 533 (780)
T ss_dssp HHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-HHHHHHHTT--HHH
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-HHHHHHHCC--CHH
Confidence 48999999999999864332 235678889999999999998775 999999999999997643 345566666 778
Q ss_pred HHHHHhccC---------------------CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC
Q 009514 406 AVGRQLRIA---------------------SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN 464 (533)
Q Consensus 406 ~L~~~L~~~---------------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~ 464 (533)
.|+.+|.+. ..++++..++.+|.+++. ++..+..+.+ .++++.|+.+|.++
T Consensus 534 ~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~-------~~~i~~Lv~lL~~~ 605 (780)
T 2z6g_A 534 RLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR-DIHNRIVIRG-------LNTIPLFVQLLYSP 605 (780)
T ss_dssp HHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT-SHHHHHHHHH-------TCCHHHHHHGGGCS
T ss_pred HHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc-ChhhHHHHHH-------CCcHHHHHHHHcCC
Confidence 888877641 124577788888888885 4445555554 79999999999999
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514 465 DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 465 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
++.++..|+.+|.+++. ..+....+.+.|+++.|.++++++++++++.|.+||.++.+..+
T Consensus 606 ~~~v~~~a~~aL~~L~~-----~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 606 IENIQRVAAGVLCELAQ-----DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp CHHHHHHHHHHHHHHHT-----SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHhc-----CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 99999999999999984 35677889999999999999999999999999999999987543
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=8.6e-40 Score=340.23 Aligned_cols=413 Identities=16% Similarity=0.189 Sum_probs=360.4
Q ss_pred cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--CCCchhhhHHHHHHhhhcCCHHH
Q 009514 101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--DPGRVGDEASFAFSSLIAEKEDM 178 (533)
Q Consensus 101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~ 178 (533)
...++.++..+.++++..+..|+..++.+.........+.+++.|++|.|+++|+ +++.++.+|+++|++++.++++.
T Consensus 75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~ 154 (529)
T 3tpo_A 75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ 154 (529)
T ss_dssp SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 3468999999999999999999999998866554445678899999999999997 34678999999999999999998
Q ss_pred HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCC-----HHHHHHHHHH
Q 009514 179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-----SDVRSAACMC 253 (533)
Q Consensus 179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~-----~~v~~~a~~~ 253 (533)
.+.+++.|++|.|+.+|.++ ++.+++.|+++|++++.+++..+..+.+.|+++.++.+|...+ ..++..++++
T Consensus 155 ~~~vv~~Gaip~Lv~LL~s~--~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 232 (529)
T 3tpo_A 155 TKAVVDGGAIPAFISLLASP--HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 232 (529)
T ss_dssp HHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence 88999999999999988776 4889999999999999988999999999999999999998654 3567889999
Q ss_pred HHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHH
Q 009514 254 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL 333 (533)
Q Consensus 254 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 333 (533)
+.++++........ ....+++|.|+.++.+++++++..|+|+|++++.+.....+.+.+.|+++.|+.++.+++..++.
T Consensus 233 L~nl~~~~~~~~~~-~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 311 (529)
T 3tpo_A 233 LSNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT 311 (529)
T ss_dssp HHHHHCCCTTCCCH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred HHHHHhcccchhhH-HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHH
Confidence 99999874433332 34578899999999999999999999999999988877888888999999999999999999999
Q ss_pred HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 009514 334 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI 413 (533)
Q Consensus 334 ~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~ 413 (533)
.++++|+|++.+ ++..+..+++.++++.|+.+|.++++.++..|+|+|+|++.+++.....+++.+ +++.|+.+|.+
T Consensus 312 ~a~~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g--~i~~Lv~lL~~ 388 (529)
T 3tpo_A 312 PALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG--LVPFLVGVLSK 388 (529)
T ss_dssp HHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTT--HHHHHHHHHHS
T ss_pred HHHHHHHHHHcc-chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcC--cHHHHHHHhcC
Confidence 999999999874 456788899999999999999999999999999999999999888888888877 88999999988
Q ss_pred CCchhHHHHHHHHHHHhcc-CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCC--CCCCcHHH
Q 009514 414 ASKAEIEIQGMYVLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS--SSPGSSGR 490 (533)
Q Consensus 414 ~~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~--~~~~~~~~ 490 (533)
++.+++..|+|+|+|++. ++.++...+++ .|+++.|+.+|+++|++++..++++|.++... ..+.....
T Consensus 389 -~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~-------~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~ 460 (529)
T 3tpo_A 389 -ADFKTQKAAAWAITNYTSGGTVEQIVYLVH-------CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKL 460 (529)
T ss_dssp -SCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred -CCHHHHHHHHHHHHHHHcCCCHHHHHHHHH-------CcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHH
Confidence 889999999999999987 45555666665 89999999999999999999999999998731 11233444
Q ss_pred HHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 491 LVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 491 ~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
...+.+.|+++.|..|..+++.++.++|...|.+++.
T Consensus 461 ~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 461 SIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp HHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 5667899999999999999999999999999988754
No 8
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=5.6e-38 Score=327.56 Aligned_cols=413 Identities=16% Similarity=0.182 Sum_probs=360.4
Q ss_pred ccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC--CchhhhHHHHHHhhhcCCHHHH
Q 009514 102 RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP--GRVGDEASFAFSSLIAEKEDMQ 179 (533)
Q Consensus 102 ~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~a~~~L~~l~~~~~~~~ 179 (533)
..++.++..++++++.+|..|+..|.++.........+.++..|++|.|+++|.++ +.++..|+++|.+++.++++.+
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~ 153 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT 153 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 46899999999999999999999999997665433466788899999999999853 6789999999999999989888
Q ss_pred HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc-CCCCHHHHHHHHHHHHHHh
Q 009514 180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL-AHDSSDVRSAACMCLRSVS 258 (533)
Q Consensus 180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L-~~~~~~v~~~a~~~L~~ls 258 (533)
..+++.|+++.|+.+|.++ ++.+++.|+++|++++.+++..+..+.+.|+++.|++++ ++.++.++..++++|.+++
T Consensus 154 ~~~~~~g~i~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 154 KVVIDHGAVPIFVKLLGSS--SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHhcCC--CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 8899999999999988875 488999999999999988888889999999999999999 6789999999999999999
Q ss_pred hccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514 259 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA 338 (533)
Q Consensus 259 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~a 338 (533)
...+... . ....++++.|++++.+++++++..|+++|++++.......+.+++.|+++.|+.++.++++.++..|+++
T Consensus 232 ~~~~~~~-~-~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~ 309 (528)
T 4b8j_A 232 RGKPQPS-F-EQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRT 309 (528)
T ss_dssp CSSSCCC-H-HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred cCCCCCc-H-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHH
Confidence 8743333 2 3568999999999999999999999999999998777777788899999999999999999999999999
Q ss_pred HHHhhccCChHhHHHHHHhhcHHHHHhhhCCC-ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCch
Q 009514 339 LRNLIFLAEDKCKEEIFMELTASLLASLICDP-EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA 417 (533)
Q Consensus 339 L~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~ 417 (533)
|+|++.+ .+...+.+++.++++.|+.+|.++ ++.++..|+|+|+|++.++++.+..++..+ +++.|..+|.+ .++
T Consensus 310 L~nl~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~--~i~~L~~lL~~-~~~ 385 (528)
T 4b8j_A 310 VGNIVTG-DDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAG--IIGPLVNLLQT-AEF 385 (528)
T ss_dssp HHHHTTS-CHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT--CHHHHHHHHHH-SCH
T ss_pred HHHHHcC-CHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCC--CHHHHHHHHhc-CCH
Confidence 9999874 356777888899999999999998 999999999999999988777777888777 78999999988 789
Q ss_pred hHHHHHHHHHHHhccC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCC-------CcHH
Q 009514 418 EIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP-------GSSG 489 (533)
Q Consensus 418 ~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~ 489 (533)
.++..++|+|+|++.+ ++.....+++ .++++.|+.+|.++++.++..++++|.++...... +...
T Consensus 386 ~v~~~a~~aL~nl~~~~~~~~~~~l~~-------~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~ 458 (528)
T 4b8j_A 386 DIKKEAAWAISNATSGGSHDQIKYLVS-------EGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNV 458 (528)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHH-------TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHH-------CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccH
Confidence 9999999999999985 5666666665 78999999999999999999999999999841100 1123
Q ss_pred HHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514 490 RLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 490 ~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~ 529 (533)
....+.+.|+++.|..+..+++++++++|...|.++....
T Consensus 459 ~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e 498 (528)
T 4b8j_A 459 FSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDE 498 (528)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence 5678899999999999999999999999999999987653
No 9
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2.2e-37 Score=323.11 Aligned_cols=414 Identities=15% Similarity=0.184 Sum_probs=358.8
Q ss_pred cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhhhHHHHHHhhhcCCHHH
Q 009514 101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDM 178 (533)
Q Consensus 101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~ 178 (533)
...++.++..++++++.+|..|+..|.++.........+.++..|++|.|+++|.+ ++.++..|+++|.+++.++++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 45799999999999999999999999998765422334567788999999999985 4678999999999999998888
Q ss_pred HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 009514 179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVS 258 (533)
Q Consensus 179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls 258 (533)
+..+++.|+++.|+++|.++ ++.+++.|+++|++++..++..+..+...|+++.|++++.+.++.++..++++|.+++
T Consensus 166 ~~~~~~~g~i~~Lv~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~ 243 (530)
T 1wa5_B 166 TKVVVDADAVPLFIQLLYTG--SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC 243 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHC--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 88888999999999999875 4889999999999999887888888899999999999999999999999999999999
Q ss_pred hccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514 259 RSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRA 338 (533)
Q Consensus 259 ~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~a 338 (533)
......... ....++++.|+.++.+++++++..++++|++++...+.....+++.|+++.|+.++.++++.++..++++
T Consensus 244 ~~~~~~~~~-~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~ 322 (530)
T 1wa5_B 244 RGKKPQPDW-SVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA 322 (530)
T ss_dssp CCSSSCCCH-HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHH
T ss_pred CCCCCCCcH-HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHH
Confidence 874222223 4668999999999999999999999999999998777777788889999999999999999999999999
Q ss_pred HHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchh
Q 009514 339 LRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAE 418 (533)
Q Consensus 339 L~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~ 418 (533)
|++++.+. +...+.+++.++++.++.+|.++++.++..|+|+|++++.++++.+..++..+ +++.|..+|.+ +++.
T Consensus 323 L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~--~l~~L~~lL~~-~~~~ 398 (530)
T 1wa5_B 323 VGNIVTGN-DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN--LIPPLVKLLEV-AEYK 398 (530)
T ss_dssp HHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--CHHHHHHHHHH-SCHH
T ss_pred HHHHHcCC-HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHHHhc-CCHH
Confidence 99998743 45677788889999999999999999999999999999988777777778766 78999999987 8899
Q ss_pred HHHHHHHHHHHhccC-Ch--hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCC-------CcH
Q 009514 419 IEIQGMYVLGNVATG-KE--SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP-------GSS 488 (533)
Q Consensus 419 v~~~a~~~L~~l~~~-~~--~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~-------~~~ 488 (533)
++..++|+|+|++.+ .+ ...+.+++ .++++.|+.++.++++.++..|+++|.++...... ...
T Consensus 399 v~~~a~~aL~~l~~~~~~~~~~~~~l~~-------~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~ 471 (530)
T 1wa5_B 399 TKKEACWAISNASSGGLQRPDIIRYLVS-------QGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNIN 471 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCTHHHHHHHH-------TTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHH-------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 999999999999874 33 45666665 78999999999999999999999999999852100 112
Q ss_pred HHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhh
Q 009514 489 GRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 528 (533)
Q Consensus 489 ~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~ 528 (533)
.....+.+.|+++.|..++.+++++++++|.++|.++...
T Consensus 472 ~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 472 ENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp HHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 3456788999999999999999999999999999998754
No 10
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=7.3e-38 Score=327.02 Aligned_cols=450 Identities=14% Similarity=0.066 Sum_probs=361.7
Q ss_pred HHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhc-CChhhHHHHHHHHHHhhh
Q 009514 54 LFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRN 131 (533)
Q Consensus 54 i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~ 131 (533)
....|++|+|+.+|.+ ++.+|+.|+.+|.+++.+++.. ..+.. ..+.++.+++++++ +++.++..|+.+|.+++.
T Consensus 13 ~~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~-~~~~~--~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~ 89 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMR--SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 89 (529)
T ss_dssp ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHH-HHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred hhhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccH-HHHHh--CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 4568899999999986 7799999999999999765533 33322 24789999998875 489999999999999987
Q ss_pred cCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHH
Q 009514 132 ASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILL 210 (533)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~ 210 (533)
.. ..+..+...|++|.|++++++ ++.++..++++|.+++.+++..++.+.+.|++|.|+++|.++ +++++..++.
T Consensus 90 ~~--~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~--~~~~~~~~~~ 165 (529)
T 1jdh_A 90 HR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTD 165 (529)
T ss_dssp SH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC--CHHHHHHHHH
T ss_pred Cc--hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHH
Confidence 53 246667888999999999985 567899999999999988766777788899999999999875 4778889999
Q ss_pred HHHHhhccchhhhHhhhhhchHHHHHHhcCCC-CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHH
Q 009514 211 ALADMCSKLECCRSRCLSLQVLKLVVDALAHD-SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 289 (533)
Q Consensus 211 aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~-~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v 289 (533)
+|.+++..+++.+..+.+.|+++.++++++++ +...+..++.+|.+++.+ +..+.. +.+.|+++.|+.++.++++++
T Consensus 166 ~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~-~~~~g~~~~L~~ll~~~~~~~ 243 (529)
T 1jdh_A 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPA-IVEAGGMQALGLHLTDPSQRL 243 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHH-HHHTTHHHHHHTTTTSSCHHH
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHH-HHHCCCHHHHHHHHhCCChHH
Confidence 99999987788889999999999999999865 456777889999999976 344444 788999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC
Q 009514 290 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD 369 (533)
Q Consensus 290 ~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~ 369 (533)
+..++|+|.|++...+... ...|+++.|+++++++++.++..++++|++++.+ +++.+..+.+.++++.+++++.+
T Consensus 244 ~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~-~~~~~~~~~~~~~v~~L~~ll~~ 319 (529)
T 1jdh_A 244 VQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLR 319 (529)
T ss_dssp HHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT-CHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHHc
Confidence 9999999999997653321 2247899999999999999999999999999874 46788899999999999999975
Q ss_pred --CChhHHHHHHHHHHHhhcCCcch---HHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHH
Q 009514 370 --PEPSVQEQALALVRNLVDGRINS---VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQ 444 (533)
Q Consensus 370 --~~~~v~~~a~~~L~~l~~~~~~~---~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 444 (533)
++++++..++++|+|++.++++. ...+...+ .++.|.++|.+..++.++..++|+|+|++.+.+ ....+++
T Consensus 320 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~--~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~- 395 (529)
T 1jdh_A 320 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY--GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLRE- 395 (529)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT--CHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHH-
T ss_pred cCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcC--ChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHH-
Confidence 44899999999999999876542 34666666 689999999884446999999999999998655 4556665
Q ss_pred hhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCC------------------cHHHHHHHHHCCcHHHHHhh
Q 009514 445 LLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPG------------------SSGRLVKLHDAGIVSHVKNM 506 (533)
Q Consensus 445 ~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~------------------~~~~~~~l~~~g~~~~L~~l 506 (533)
.+++|.|+++|+++++++|..|+|+++|.... .++ ..+....+.+.|+++.|+++
T Consensus 396 ------~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~-~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~l 468 (529)
T 1jdh_A 396 ------QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV-EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL 468 (529)
T ss_dssp ------TTHHHHHHHHHHHHHHHHC-----------CB-TTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHG
T ss_pred ------cCCHHHHHHHHHHHhHHHHHHHhcccCchhhh-ccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHH
Confidence 79999999999998889999888888872111 111 23444678999999999999
Q ss_pred hcCCCCcHHHHHHHHHHHHhh
Q 009514 507 VNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 507 l~~~~~~v~~~a~~aL~~~~~ 527 (533)
+.++++++++.+.++|.++..
T Consensus 469 l~~~~~~v~~~a~~~l~~l~~ 489 (529)
T 1jdh_A 469 LYSPIENIQRVAAGVLCELAQ 489 (529)
T ss_dssp GGCSCHHHHHHHHHHHHHHTT
T ss_pred HcCCchHHHHHHHHHHHHHhc
Confidence 999999999999999999863
No 11
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=1.4e-37 Score=321.81 Aligned_cols=408 Identities=15% Similarity=0.147 Sum_probs=345.7
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchh--HHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhh
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLE--QKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVV 92 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~--~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~ 92 (533)
..++.|+..++|+++..|..|+..+.++.+...+ ...+++.|++|+|+++|++ ++.+|..|+.+|++++..+++..
T Consensus 57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 3589999999999999999999999987654443 5679999999999999975 46899999999999999998887
Q ss_pred hhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCC------chhhhHHH
Q 009514 93 SQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG------RVGDEASF 166 (533)
Q Consensus 93 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~------~~~~~a~~ 166 (533)
..+.+ .|++|.++.++++++..+|..|+++|.+++..++. .++.+...|+++.|+.++..+. .+...+++
T Consensus 137 ~~vv~---~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~-~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 212 (510)
T 3ul1_B 137 KAVVD---GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSA-FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 212 (510)
T ss_dssp HHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHH---CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHH-HHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHH
Confidence 77754 68999999999999999999999999999987653 5677889999999999998431 24567889
Q ss_pred HHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHH
Q 009514 167 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDV 246 (533)
Q Consensus 167 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v 246 (533)
++.+++.+...........+++|.|+++|.+. +++++..++++|.+++...++....+.+.|+++.|+++|.++++.+
T Consensus 213 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v 290 (510)
T 3ul1_B 213 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 290 (510)
T ss_dssp HHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred HHHHHhhcccchhHHHHHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhh
Confidence 99999876543333334457789999988765 4789999999999999877777777889999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC
Q 009514 247 RSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS 326 (533)
Q Consensus 247 ~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~ 326 (533)
+..++++|++++...+..... +.+.|+++.|+.+|++++++++..|+|+|+|++.+....+..+.+.|+++.|+.++.+
T Consensus 291 ~~~al~aL~nl~~~~~~~~~~-i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~ 369 (510)
T 3ul1_B 291 VTPALRAIGNIVTGTDEQTQK-VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 369 (510)
T ss_dssp HHHHHHHHHHHTTSCHHHHHH-HHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred hhHHHHHHHHhhcCCHHHHHH-HhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC
Confidence 999999999998765554444 7889999999999999999999999999999999888888899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC-----CcchHHHHHhhcC
Q 009514 327 MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG-----RINSVEYIFAEDG 401 (533)
Q Consensus 327 ~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~~~ 401 (533)
.+..+|..|+|+|+|++.+.+++....+.+.|+++.|+++|+++|++++..++++|.|+... ..+....++++.|
T Consensus 370 ~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~g 449 (510)
T 3ul1_B 370 ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECG 449 (510)
T ss_dssp SCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcC
Confidence 99999999999999999887777888899999999999999999999999999999999742 2223334454443
Q ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHhccC
Q 009514 402 IILDAVGRQLRIASKAEIEIQGMYVLGNVATG 433 (533)
Q Consensus 402 ~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~ 433 (533)
.++.+.. |+++++.+|.+.|..+|-.+...
T Consensus 450 -gl~~ie~-Lq~~~n~~i~~~A~~iie~yf~~ 479 (510)
T 3ul1_B 450 -GLDKIEA-LQRHENESVYKASLNLIEKYFSV 479 (510)
T ss_dssp -HHHHHHH-GGGCSSHHHHHHHHHHHHHHCC-
T ss_pred -cHHHHHH-HHcCCCHHHHHHHHHHHHHHCCC
Confidence 5677755 45558999999999999887653
No 12
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=4.1e-37 Score=332.98 Aligned_cols=477 Identities=14% Similarity=0.080 Sum_probs=380.1
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF 95 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~ 95 (533)
++++.++..|.++++.++..++..+... ++..+ ..|++|.|+.+|.+ +..+|+.|+.+|++++.+.+.. ..+
T Consensus 115 ~~i~~lv~~L~~~~~~~r~~a~~~l~~~-----~~~~i-~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~-~~i 187 (780)
T 2z6g_A 115 SAHPTNVQRLAEPSQMLKHAVVNLINYQ-----DDAEL-ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAI 187 (780)
T ss_dssp -----------CCSCHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHH-HHH
T ss_pred ccHHHHHHHhcCccHHHHHHHHHHHHhh-----hHHHH-HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhH-HHH
Confidence 3689999999999999999888888754 23334 48999999999986 6799999999999999765433 333
Q ss_pred ccccCcccHHHHHHHHhcC-ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhc
Q 009514 96 VGPDTGRTLSCIIEIVKDR-FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIA 173 (533)
Q Consensus 96 ~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~ 173 (533)
.. ..+.++.++..+++. ++.+|..|+.+|.+++.... .+..+...|++|.|+++|++ ++.++..|+++|.+++.
T Consensus 188 ~~--~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~--~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~ 263 (780)
T 2z6g_A 188 MR--SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE--GLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLL 263 (780)
T ss_dssp TT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHH--HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred Hh--ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCch--hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 32 246899999988754 89999999999999887532 35667788999999999985 46789999999999998
Q ss_pred CCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCH-HHHHHHHH
Q 009514 174 EKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSS-DVRSAACM 252 (533)
Q Consensus 174 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~-~v~~~a~~ 252 (533)
+.+..++.+.+.|+++.|+++|.+. ++.++..++.+|..++..+++.+..+.+.|+++.|++++++.++ ..+..++.
T Consensus 264 ~~~~~~~~v~~~g~v~~Lv~lL~~~--~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~ 341 (780)
T 2z6g_A 264 HQEGAKMAVRLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 341 (780)
T ss_dssp HSTTHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CChhhHHHHHHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 8777777788899999999999875 47788899999999998778888889999999999999997754 56678899
Q ss_pred HHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHH
Q 009514 253 CLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIR 332 (533)
Q Consensus 253 ~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~ 332 (533)
+|.+++.+ +..+.. +.+.|+++.|+.++.+++++++..|+++|.+++...... ....++++.|+++++++++.++
T Consensus 342 aL~~Ls~~-~~~~~~-i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr 416 (780)
T 2z6g_A 342 VLKVLSVC-SSNKPA-IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVV 416 (780)
T ss_dssp HHHHHHTS-TTHHHH-HHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHhhcC-hHHHHH-HHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHH
Confidence 99999976 333444 788999999999999999999999999999999755331 1224789999999999999999
Q ss_pred HHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC-CC-hhHHHHHHHHHHHhhcCCcch---HHHHHhhcCchHHHH
Q 009514 333 LNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-PE-PSVQEQALALVRNLVDGRINS---VEYIFAEDGIILDAV 407 (533)
Q Consensus 333 ~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~-~~-~~v~~~a~~~L~~l~~~~~~~---~~~i~~~~~~~~~~L 407 (533)
..|+++|.+++.+ +++.+..+.+.++++.|+++|.+ ++ .+++..++++|+|++..+++. ...+...+ .++.|
T Consensus 417 ~~A~~aL~~L~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~--~l~~L 493 (780)
T 2z6g_A 417 TCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHY--GLPVV 493 (780)
T ss_dssp HHHHHHHHHHTSS-CHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTT--CHHHH
T ss_pred HHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcC--CHHHH
Confidence 9999999999874 45678889999999999999975 33 489999999999998765542 23555556 68999
Q ss_pred HHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChh--------------------
Q 009514 408 GRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR-------------------- 467 (533)
Q Consensus 408 ~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~-------------------- 467 (533)
.++|.+...+.++..++|+|+|++.+.+ .+..+.+ .++++.|+++|.+++.+
T Consensus 494 ~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~i~~-------~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~ 565 (780)
T 2z6g_A 494 VKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLRE-------QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 565 (780)
T ss_dssp HHTTSTTCCHHHHHHHHHHHHHHHSSHH-HHHHHHH-------TTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCH
T ss_pred HHHhcCCChHHHHHHHHHHHHHHhcCHH-HHHHHHH-------CCCHHHHHHHHHhcchhHHHHHhhccccchhhcccCh
Confidence 9999884445999999999999998654 4455554 79999999999875544
Q ss_pred --HHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 468 --LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 468 --v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
++..++.+|.+++. .......+.+.|+++.|++++.++++.++..|..+|.++..
T Consensus 566 ~~v~~~a~~aL~~La~-----~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~ 622 (780)
T 2z6g_A 566 EEIVEACTGALHILAR-----DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ 622 (780)
T ss_dssp HHHHHHHHHHHHHHTT-----SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc-----ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 45566666666763 34455678899999999999999999999999999999863
No 13
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=1.4e-36 Score=310.62 Aligned_cols=411 Identities=16% Similarity=0.181 Sum_probs=350.5
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHh-hhHHHHHHhcCC--CCchhhhHHHHHHhhhcCCHHHH
Q 009514 103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKT-KLINNLLELLDD--PGRVGDEASFAFSSLIAEKEDMQ 179 (533)
Q Consensus 103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~~i~~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~~ 179 (533)
.++.+++.++++++.+|..|+.+|..+............+.. |++|.|++++++ ++.++..++++|.+++.++++..
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 388899999999999999999999997642211123445566 999999999984 45789999999999999888777
Q ss_pred HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC-CCHHHHHHHHHHHHHHh
Q 009514 180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCLRSVS 258 (533)
Q Consensus 180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~-~~~~v~~~a~~~L~~ls 258 (533)
+.+.+.|+++.|+++|.++ ++.+++.|+++|++++.+++..+..+.+.|+++.+++++++ .++.++..++++|++++
T Consensus 101 ~~~~~~~~i~~L~~lL~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~ 178 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSE--FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLC 178 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 7788899999999988875 48899999999999999888888888999999999999995 78999999999999999
Q ss_pred hcc-ccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHH
Q 009514 259 RSI-KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALR 337 (533)
Q Consensus 259 ~~~-~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~ 337 (533)
... +..... ...+++|.|++++.+++++++..++|+|++++....+....+.+.|+++.|+.++.++++.++..+++
T Consensus 179 ~~~~~~~~~~--~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~ 256 (450)
T 2jdq_A 179 RGKSPPPEFA--KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALR 256 (450)
T ss_dssp CCSSSCCCGG--GTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred CCCCCCCCHH--HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHH
Confidence 764 232222 33789999999999999999999999999999877677778888999999999999999999999999
Q ss_pred HHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCch
Q 009514 338 ALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA 417 (533)
Q Consensus 338 aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~ 417 (533)
+|++++.+. +...+.+.+.++++.+++++.++++.++..++++|++++.++++....+++.+ +++.+...|.+ +++
T Consensus 257 ~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~~l~~-~~~ 332 (450)
T 2jdq_A 257 AVGNIVTGD-DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDAN--IFPALISILQT-AEF 332 (450)
T ss_dssp HHHHHTTSC-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHHHH-SCH
T ss_pred HHHHHhhCC-hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHHHhc-CCH
Confidence 999998753 45666778889999999999999999999999999999988777777777766 88999999987 789
Q ss_pred hHHHHHHHHHHHhccC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCC-------CcHH
Q 009514 418 EIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP-------GSSG 489 (533)
Q Consensus 418 ~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~ 489 (533)
.++..++|+|+|++.+ ++...+.+++ .+++|.|+.+++++++.++..|+++|.+++..... ....
T Consensus 333 ~v~~~a~~~L~~l~~~~~~~~~~~l~~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~ 405 (450)
T 2jdq_A 333 RTRKEAAWAITNATSGGSAEQIKYLVE-------LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINP 405 (450)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHH-------HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHH-------CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhH
Confidence 9999999999999975 5556666665 78999999999999999999999999999952100 0112
Q ss_pred HHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhh
Q 009514 490 RLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSF 528 (533)
Q Consensus 490 ~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~ 528 (533)
....+.+.|+++.|..++++++.++++.|..+|.++...
T Consensus 406 ~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 406 YCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 456788899999999999988899999999999998753
No 14
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=7.6e-37 Score=326.01 Aligned_cols=446 Identities=14% Similarity=0.076 Sum_probs=365.8
Q ss_pred HHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcC-ChhhHHHHHHHHHHhhh
Q 009514 54 LFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDR-FARTRLLASLCLIVIRN 131 (533)
Q Consensus 54 i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~ 131 (533)
....|+++.|+++|.+ ++.+|+.|+.+|++++.+.+.. ..+.. ..+.++.+++.+++. ++.+|..|+.+|.+++.
T Consensus 10 ~~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~-~~i~~--~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~ 86 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMR--SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 86 (644)
T ss_dssp --CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHH-HHHTT--CHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred hhhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhH-HHHHh--ccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 4678999999999986 7799999999999999877543 33322 247899999999865 89999999999999887
Q ss_pred cCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHH
Q 009514 132 ASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILL 210 (533)
Q Consensus 132 ~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~ 210 (533)
... .+..+...|++|.|++++++ ++.++..|+++|.+++.+.+..+..+.+.|+++.|+++|.+.+ ++.+..++.
T Consensus 87 ~~~--~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~--~~~~~~a~~ 162 (644)
T 2z6h_A 87 HRE--GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN--VKFLAITTD 162 (644)
T ss_dssp SHH--HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCC--HHHHHHHHH
T ss_pred Chh--hHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCC--HHHHHHHHH
Confidence 642 45667788999999999985 4678999999999999877666777888999999999998763 677788888
Q ss_pred HHHHhhccchhhhHhhhhhchHHHHHHhcCCCC-HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHH
Q 009514 211 ALADMCSKLECCRSRCLSLQVLKLVVDALAHDS-SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAV 289 (533)
Q Consensus 211 aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~-~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v 289 (533)
+|.+++..+++.+..+.+.|+++.|++++++.+ ..++..++.+|++++.+ +..+.. +.+.|+++.|+.++.+++.++
T Consensus 163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~-l~~~g~l~~L~~ll~~~~~~~ 240 (644)
T 2z6h_A 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPA-IVEAGGMQALGLHLTDPSQRL 240 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHH-HHHTTHHHHHHTTTTCSCHHH
T ss_pred HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHH-HHHCCCHHHHHHHHhcCCHHH
Confidence 999999877788889999999999999998764 67889999999999976 444444 788999999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC
Q 009514 290 QVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD 369 (533)
Q Consensus 290 ~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~ 369 (533)
+..++++|.|++...... ....++++.|+++++++++.++..++++|.+++.+ +++.+..+.+.++++.|++++.+
T Consensus 241 ~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~-~~~~~~~v~~~g~v~~Lv~lL~~ 316 (644)
T 2z6h_A 241 VQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN-NYKNKMMVCQVGGIEALVRTVLR 316 (644)
T ss_dssp HHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHHc
Confidence 999999999999754331 12247899999999999999999999999999874 45788899999999999999976
Q ss_pred C--ChhHHHHHHHHHHHhhcCCcc--hHH-HHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHH
Q 009514 370 P--EPSVQEQALALVRNLVDGRIN--SVE-YIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQ 444 (533)
Q Consensus 370 ~--~~~v~~~a~~~L~~l~~~~~~--~~~-~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 444 (533)
. .++++..++++|+|++..+++ ..+ .+...+ .++.|.++|.+..++.++..++|+|+|++.+.+ .++.+++
T Consensus 317 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~--~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-~~~~i~~- 392 (644)
T 2z6h_A 317 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHY--GLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLRE- 392 (644)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTT--HHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHH-
T ss_pred cCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHcc--ChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-HHHHHHH-
Confidence 3 379999999999999976543 222 355555 689999999884457999999999999998655 4566665
Q ss_pred hhHhhhhhhHHHHHHhhccCChhHHH----------------------HHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHH
Q 009514 445 LLLRAENKAQSCIIKFLQSNDSRLRT----------------------AAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSH 502 (533)
Q Consensus 445 ~~~~~~~~~~~~lv~~L~~~~~~v~~----------------------~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~ 502 (533)
.+++|.|+++|.+++.++|. .++.+|.+++. .......+.+.|+++.
T Consensus 393 ------~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~-----~~~~~~~l~~~~~i~~ 461 (644)
T 2z6h_A 393 ------QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR-----DVHNRIVIRGLNTIPL 461 (644)
T ss_dssp ------TTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT-----SHHHHHHHHHTTCHHH
T ss_pred ------cCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc-----CHHHHHHHHhCCcHHH
Confidence 89999999999876555544 45555555553 2244567889999999
Q ss_pred HHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 503 VKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 503 L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
|++++.++++++++.|.++|.++..
T Consensus 462 Lv~lL~~~~~~v~~~a~~aL~~l~~ 486 (644)
T 2z6h_A 462 FVQLLYSPIENIQRVAAGVLCELAQ 486 (644)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999865
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.8e-36 Score=315.27 Aligned_cols=407 Identities=16% Similarity=0.152 Sum_probs=344.6
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchh--HHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhh
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLE--QKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVV 92 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~--~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~ 92 (533)
..++.++..+.|+++..|..|+..+.++-....+ ...+++.|++|.|+++|.. ++.+|..|+.+|++++..+++..
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 4689999999999999999999999886433333 5678999999999999974 57899999999999999888876
Q ss_pred hhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCC------chhhhHHH
Q 009514 93 SQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG------RVGDEASF 166 (533)
Q Consensus 93 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~------~~~~~a~~ 166 (533)
..+.. .|++|.++.+++++++.++..|+++|.+++..++. .++.+...|+++.|+.++..+. .+...+++
T Consensus 156 ~~vv~---~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~-~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~ 231 (529)
T 3tpo_A 156 KAVVD---GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA-FRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 231 (529)
T ss_dssp HHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHH
T ss_pred HHHHH---CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH-HHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHH
Confidence 66654 68999999999999999999999999999987653 5677889999999999998431 24567889
Q ss_pred HHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHH
Q 009514 167 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDV 246 (533)
Q Consensus 167 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v 246 (533)
++.+++.+...........+++|.|+++|.+. +++++..++++|.+++.+.++....+.+.|++|.|+++|.++++.+
T Consensus 232 ~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v 309 (529)
T 3tpo_A 232 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPI 309 (529)
T ss_dssp HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHH
T ss_pred HHHHHHhcccchhhHHHHhhHHHHHHHHhcCC--cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhH
Confidence 99999876544333344467899999988765 4789999999999999887777778889999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC
Q 009514 247 RSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS 326 (533)
Q Consensus 247 ~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~ 326 (533)
+..++++|++++...+..... +.+.|+++.|+.+|.+++++++..|+|+|+|++.+.......+++.|+++.|+.++.+
T Consensus 310 ~~~a~~aL~nl~~~~~~~~~~-i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~ 388 (529)
T 3tpo_A 310 VTPALRAIGNIVTGTDEQTQK-VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 388 (529)
T ss_dssp HHHHHHHHHHHTTSCHHHHHH-HHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHccchHHHHH-HhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC
Confidence 999999999998764544444 7889999999999999999999999999999999888888899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC-----CcchHHHHHhhcC
Q 009514 327 MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG-----RINSVEYIFAEDG 401 (533)
Q Consensus 327 ~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~~~ 401 (533)
++..++..|+|+|+|++.+.+++....+.+.|+++.|+++|.++|++++..++++|.|+... ..+.....+.+.|
T Consensus 389 ~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~g 468 (529)
T 3tpo_A 389 ADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECG 468 (529)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCC
Confidence 99999999999999999877777888899999999999999999999999999999998742 2223334444433
Q ss_pred chHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514 402 IILDAVGRQLRIASKAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 402 ~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 432 (533)
.++.+.. |+++.+.+|.+.|..+|-.+..
T Consensus 469 -gl~~ie~-Lq~~~n~~i~~~A~~iie~yf~ 497 (529)
T 3tpo_A 469 -GLDKIEA-LQRHENESVYKASLNLIEKYFS 497 (529)
T ss_dssp -CHHHHTG-GGGCSSHHHHHHHHHHHHHHC-
T ss_pred -cHHHHHH-HHcCCCHHHHHHHHHHHHHHCC
Confidence 4677655 4555899999999999987764
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=5.4e-35 Score=304.98 Aligned_cols=407 Identities=14% Similarity=0.117 Sum_probs=344.6
Q ss_pred ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCc--hhHHHHHhcCchHHHHHhhcC-C-hHHHHHHHHHHHHHhcCChhh
Q 009514 16 EENMEFLLSLLNNESENVSGLGASIISHSCKTS--LEQKLLFDAGVLKRLTSLLGG-S-LIQRDASLESIATIFKNNPEV 91 (533)
Q Consensus 16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~--~~~~~i~~~g~i~~L~~lL~~-~-~~v~~~al~aL~~l~~~~~~~ 91 (533)
...++.|+.+|.++++.++..|+..|.++.... .....+.+.|++|.|+++|.+ + +.+|..|+.+|++++..+++.
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 356899999999999999999999999985443 457788999999999999986 4 799999999999999988877
Q ss_pred hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC-C-CCchhhhHHHHHH
Q 009514 92 VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD-D-PGRVGDEASFAFS 169 (533)
Q Consensus 92 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~-~-~~~~~~~a~~~L~ 169 (533)
...+.. .++++.++.+++++++.+|..|+.+|.+++...+. .++.+...|++|.|++++. + +..++..++++|.
T Consensus 153 ~~~~~~---~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~-~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 153 TKVVID---HGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPK-CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp HHHHHH---TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHH-HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHh---CCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChh-hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 666543 58999999999999999999999999999976542 4566778899999999995 3 4678899999999
Q ss_pred hhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHH
Q 009514 170 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSA 249 (533)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~ 249 (533)
+++.+.+.. ......++++.|+++|.+. ++.++..++++|++++...+.....+.+.|+++.++++|.++++.++..
T Consensus 229 ~L~~~~~~~-~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~ 305 (528)
T 4b8j_A 229 NFCRGKPQP-SFEQTRPALPALARLIHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIP 305 (528)
T ss_dssp HHHCSSSCC-CHHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHH
T ss_pred HHHcCCCCC-cHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHH
Confidence 999765322 2334578899999988765 4889999999999999877666677888999999999999999999999
Q ss_pred HHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC
Q 009514 250 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD 328 (533)
Q Consensus 250 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~ 328 (533)
|+++|++++...+..... +.+.|+++.|+.+|.++ ++.++..|+|+|+|++.+.......+++.|+++.|+.++.+.+
T Consensus 306 a~~~L~nl~~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 384 (528)
T 4b8j_A 306 ALRTVGNIVTGDDAQTQC-IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAE 384 (528)
T ss_dssp HHHHHHHHTTSCHHHHHH-HHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHcCCHHHHHH-HHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCC
Confidence 999999999864444444 67899999999999988 9999999999999999877777778889999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc-----------hHHHHH
Q 009514 329 STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN-----------SVEYIF 397 (533)
Q Consensus 329 ~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~-----------~~~~i~ 397 (533)
+.++..|+|+|+|++...+++....+.+.++++.|+.+|.+++++++..++++|.+++...+. ....+.
T Consensus 385 ~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~ 464 (528)
T 4b8j_A 385 FDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMID 464 (528)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHH
Confidence 999999999999999876677888889999999999999999999999999999999864322 223333
Q ss_pred hhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccC
Q 009514 398 AEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATG 433 (533)
Q Consensus 398 ~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~ 433 (533)
+.+ .++.+..+..+ ++++++..|.+++.++...
T Consensus 465 ~~~--~~~~l~~L~~~-~~~~v~~~a~~il~~~~~~ 497 (528)
T 4b8j_A 465 EAE--GLEKIENLQSH-DNNEIYEKAVKILEAYWMD 497 (528)
T ss_dssp HTT--HHHHHHHGGGC-SSHHHHHHHHHHHHHHCC-
T ss_pred HCC--cHHHHHHHHcC-CCHHHHHHHHHHHHHHCCC
Confidence 344 56777665555 8899999999999998864
No 17
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=9.7e-35 Score=303.04 Aligned_cols=410 Identities=13% Similarity=0.123 Sum_probs=344.5
Q ss_pred ccchHHHHhhhcCCCcchhHHHHHHHHHhhcC--chhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhh
Q 009514 16 EENMEFLLSLLNNESENVSGLGASIISHSCKT--SLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEV 91 (533)
Q Consensus 16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~--~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~ 91 (533)
.+.++.|+..|+++++.++..|+..|.++... ......+.+.|++|.|+++|.+ ++.+|..|+.+|++++..+++.
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~ 165 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ 165 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 46799999999999999999999999998654 3445678899999999999986 5789999999999999887776
Q ss_pred hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHh
Q 009514 92 VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSS 170 (533)
Q Consensus 92 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~ 170 (533)
...+.. .++++.++.+++++++.+|..|+++|.+++...+. .++.+...|++|.|++++.+ +..++..++++|.+
T Consensus 166 ~~~~~~---~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 166 TKVVVD---ADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD-YRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHH---TTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHH-HHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHH---CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCcc-chHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 555543 57899999999999999999999999999986542 45667788999999999985 45788999999999
Q ss_pred hhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHH
Q 009514 171 LIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAA 250 (533)
Q Consensus 171 l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a 250 (533)
++.+...........++++.|+++|.+. ++.++..++++|++++...+.....+.+.|+++.++++|.++++.++..|
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a 319 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPA 319 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHH
Confidence 9966411122344578999999988765 47899999999999998776777778888999999999999999999999
Q ss_pred HHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHH
Q 009514 251 CMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST 330 (533)
Q Consensus 251 ~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~ 330 (533)
+++|++++...+..... +.+.|+++.|+.+|.++++.++..|+|+|+|++.........+++.|+++.|+.++.++++.
T Consensus 320 ~~~L~~l~~~~~~~~~~-~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~ 398 (530)
T 1wa5_B 320 LRAVGNIVTGNDLQTQV-VINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK 398 (530)
T ss_dssp HHHHHHHTTSCHHHHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHH
T ss_pred HHHHHHHHcCCHHHHHH-HHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHH
Confidence 99999998764444434 67789999999999999999999999999999987777777888899999999999999999
Q ss_pred HHHHHHHHHHHhhccCCh--HhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc-----------hHHHHH
Q 009514 331 IRLNALRALRNLIFLAED--KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN-----------SVEYIF 397 (533)
Q Consensus 331 ~~~~al~aL~~l~~~~~~--~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~-----------~~~~i~ 397 (533)
++..++|+|++++.+.++ +....+.+.++++.|+.++.+++++++..++++|.+++...+. ....+.
T Consensus 399 v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~ 478 (530)
T 1wa5_B 399 TKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIE 478 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHH
Confidence 999999999999986555 6777888999999999999999999999999999999864322 122333
Q ss_pred hhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCCh
Q 009514 398 AEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKE 435 (533)
Q Consensus 398 ~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~ 435 (533)
+.+ .++.|..++.+ +++.+++.+.++|.++....+
T Consensus 479 ~~g--~~~~L~~L~~~-~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 479 KAG--GMEKIFNCQQN-ENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp HTT--HHHHHHGGGGC-SCHHHHHHHHHHHHHHSSSCC
T ss_pred HcC--cHHHHHHHHcC-CCHHHHHHHHHHHHHHCCccc
Confidence 444 57778776555 889999999999999886543
No 18
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=1.3e-34 Score=295.94 Aligned_cols=378 Identities=16% Similarity=0.137 Sum_probs=306.9
Q ss_pred cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcC-CHHH
Q 009514 101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAE-KEDM 178 (533)
Q Consensus 101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~-~~~~ 178 (533)
...++.++.+++++++.+|..|+.+|.+++..++ ..+..++..|+||.|+++|+. +..++..|+++|.+++.+ +++.
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~-~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND-KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 5689999999999999999999999999997553 356678889999999999984 578999999999999985 6888
Q ss_pred HHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC------------------
Q 009514 179 QKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA------------------ 240 (533)
Q Consensus 179 ~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~------------------ 240 (533)
+..+.+.|++|.|+++|.+. .+..+++.++.+|++|+.+ ++++..+++ +++|.|++++.
T Consensus 126 k~~I~~~GaIp~LV~LL~s~-~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKA-RDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHC-CSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhcccccccccccccccccc
Confidence 89999999999999999875 2467899999999999974 577777775 67999999871
Q ss_pred CCCHHHHHHHHHHHHHHhhccccccchhhhh-cCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCCch-------
Q 009514 241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMN-ETIVIPLVRLLDD------TSTAVQVAALGAISNIVVDFTT------- 306 (533)
Q Consensus 241 ~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~-~~~i~~Lv~lL~~------~~~~v~~~a~~aL~nl~~~~~~------- 306 (533)
..++.++..|+++|+||+...++.+.. +.+ .|+++.|+.++++ .+.+.++.|+++|.||+.....
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~-i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~ 281 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSERSEARRK-LRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER 281 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCHHHHHH-HHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred cccHHHHHHHHHHHHHHhcCCHHHHHH-HHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence 235799999999999999875555655 665 4667899999863 5678999999999999964210
Q ss_pred ------------------hHHHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCCh---HhHHHHHHhhcHHHHH
Q 009514 307 ------------------RRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAED---KCKEEIFMELTASLLA 364 (533)
Q Consensus 307 ------------------~~~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~---~~~~~i~~~~~~~~l~ 364 (533)
..+.+.+.++++.|+.+++ +.++.++++|+++|.||+.+..+ ..+..+.++++++.|+
T Consensus 282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 0112223456788899985 56799999999999999875432 2344556688999999
Q ss_pred hhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCC-------chhHHHHHHHHHHHhccCChhh
Q 009514 365 SLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS-------KAEIEIQGMYVLGNVATGKESH 437 (533)
Q Consensus 365 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~-------~~~v~~~a~~~L~~l~~~~~~~ 437 (533)
+||.+++.++++.++++|+||+.+.. ...++..+ .++.|+.+|.+.. +.++...++++|+|++.+++..
T Consensus 362 ~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~I~~g--~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~ 437 (584)
T 3l6x_A 362 DLLTNEHERVVKAASGALRNLAVDAR--NKELIGKH--AIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEA 437 (584)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTCS--CHHHHHHH--HHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCChh--HHHHHHhC--CHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999998754 33455655 7899999998732 3578999999999999998888
Q ss_pred HHHHHHHhhHhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCc
Q 009514 438 KEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI 499 (533)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~lv~~L~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~ 499 (533)
++.+++ .|.+|.|+.+++++ ...+++.|+|+|++++. ..+....+.+.|.
T Consensus 438 ~~~I~~-------~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~-----~~elr~~~kk~G~ 489 (584)
T 3l6x_A 438 AKKLRE-------TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG-----YKELRKPLEKEGW 489 (584)
T ss_dssp HHHHHH-------TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT-----SHHHHHHHHTTTC
T ss_pred HHHHHH-------CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc-----CHHHHHHHHHcCC
Confidence 888886 89999999999986 77899999999999984 3444555555553
No 19
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=4.6e-34 Score=291.96 Aligned_cols=370 Identities=12% Similarity=0.120 Sum_probs=305.3
Q ss_pred CCcccccccchHHHHhhhcCCCcchhHHHHHHHHHhhc-CchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhc
Q 009514 9 PKYDFLQEENMEFLLSLLNNESENVSGLGASIISHSCK-TSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFK 86 (533)
Q Consensus 9 ~~~~l~~~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~-~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~ 86 (533)
|++--+..+.++.|+.+|.++++.+|+.|+..|.++|. ++++|..+++.|++|+|+++|.+ +..+|+.|+.+|.+|+.
T Consensus 40 ~~~~~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~ 119 (584)
T 3l6x_A 40 PPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF 119 (584)
T ss_dssp CCCCCCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTS
T ss_pred CCCCCcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 34455667899999999999999999999999999995 67789999999999999999997 78999999999999998
Q ss_pred C-ChhhhhhhccccCcccHHHHHHHHhc-CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC---------
Q 009514 87 N-NPEVVSQFVGPDTGRTLSCIIEIVKD-RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--------- 155 (533)
Q Consensus 87 ~-~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--------- 155 (533)
. +++.+..+.. .|+|+.++.++++ .+..++..|+.+|++++... ..+..++ .+++|.|++++.
T Consensus 120 ~~~~~nk~~I~~---~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~--~~k~~I~-~~alp~Lv~LL~~p~sg~~~~ 193 (584)
T 3l6x_A 120 GRDQDNKIAIKN---CDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD--SIKMEIV-DHALHALTDEVIIPHSGWERE 193 (584)
T ss_dssp SSCHHHHHHHHH---TTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG--GGHHHHH-HHTHHHHHHHTHHHHHCCC--
T ss_pred cCCHHHHHHHHH---cCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hhhHHHH-hccHHHHHHHHhccccccccc
Confidence 5 6777777754 6899999999997 67889999999999999843 3455555 568999999871
Q ss_pred ----------CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCc-HHHHHHhhhcC----CCCchhHHHHHHHHHHhhccch
Q 009514 156 ----------DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNG-VDKLYNHLQKG----SLHPRRFEGILLALADMCSKLE 220 (533)
Q Consensus 156 ----------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-l~~L~~~L~~~----~~~~~~~~~a~~aL~~l~~~~~ 220 (533)
++..++..|+++|.+++.++++.++.+++++| ++.|+.+|.+. ..+...++.|+++|.+|+...+
T Consensus 194 ~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~ 273 (584)
T 3l6x_A 194 PNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVH 273 (584)
T ss_dssp --------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccc
Confidence 12467889999999999999888888888766 57999988742 2345688999999999986421
Q ss_pred hh-------------------------hHhhhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHhhccc----cccchhhh
Q 009514 221 CC-------------------------RSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIK----NLSAGSFM 270 (533)
Q Consensus 221 ~~-------------------------~~~~~~~~~l~~l~~~L~-~~~~~v~~~a~~~L~~ls~~~~----~~~~~~~~ 270 (533)
.. ...+...++++.++.+|+ +.++.+++.|+++|.||+.+.. ..+.. +.
T Consensus 274 ~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~-v~ 352 (584)
T 3l6x_A 274 REIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSA-LR 352 (584)
T ss_dssp HHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHH-HT
T ss_pred ccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHH-HH
Confidence 00 112234467888999996 5689999999999999986521 11222 45
Q ss_pred hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC--------CHHHHHHHHHHHHHh
Q 009514 271 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM--------DSTIRLNALRALRNL 342 (533)
Q Consensus 271 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~--------~~~~~~~al~aL~~l 342 (533)
+.+++|.|+++|.+++.+++..|+|+|+||+.+.. .+. .+..|+++.|+++|.++ +++++..++++|+|+
T Consensus 353 ~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~-~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL 430 (584)
T 3l6x_A 353 QEKALSAIADLLTNEHERVVKAASGALRNLAVDAR-NKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV 430 (584)
T ss_dssp SHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS-CHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh-HHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999997653 443 45789999999999876 467899999999999
Q ss_pred hccCChHhHHHHHHhhcHHHHHhhhCCC--ChhHHHHHHHHHHHhhcC
Q 009514 343 IFLAEDKCKEEIFMELTASLLASLICDP--EPSVQEQALALVRNLVDG 388 (533)
Q Consensus 343 ~~~~~~~~~~~i~~~~~~~~l~~lL~~~--~~~v~~~a~~~L~~l~~~ 388 (533)
+.. +++.++.+.+.++++.|+.++.+. .+.+++.|.++|.++...
T Consensus 431 ~a~-~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~ 477 (584)
T 3l6x_A 431 IAE-NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY 477 (584)
T ss_dssp HTT-CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS
T ss_pred hcC-CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC
Confidence 864 577899999999999999999876 899999999999999875
No 20
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3.4e-35 Score=294.15 Aligned_cols=361 Identities=16% Similarity=0.145 Sum_probs=283.0
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--C-----------CchhhhHHHHHH
Q 009514 103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--P-----------GRVGDEASFAFS 169 (533)
Q Consensus 103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~-----------~~~~~~a~~~L~ 169 (533)
.++.++..+.+.++.. ..+.|..+....+ ....+++.|++|.|+++|.. . +.++.+|+|+|+
T Consensus 33 ~~~~l~~~~~~~~~~~---~~~~ll~~~~~~~--~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ 107 (458)
T 3nmz_A 33 MVYSLLSMLGTHDKDD---MSRTLLAMSSSQD--SCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALH 107 (458)
T ss_dssp ------------CCHH---HHHHHHHHHSSTT--HHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHH---HHHHHHHHHcCCc--HHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHH
Confidence 4555666666655552 4445555555332 33557899999999999983 2 368999999999
Q ss_pred hhhcCCHHHHHHHHHcCcH----------HHHHHhhhcCCCCch-----hHH-------HHHHHHHHhhccchhhhHhhh
Q 009514 170 SLIAEKEDMQKLAFEVNGV----------DKLYNHLQKGSLHPR-----RFE-------GILLALADMCSKLECCRSRCL 227 (533)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~l----------~~L~~~L~~~~~~~~-----~~~-------~a~~aL~~l~~~~~~~~~~~~ 227 (533)
|++.+.++..+...+.+.+ +.+++++.......+ +++ +|+|+|++++.+ +++|+.+.
T Consensus 108 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~i~ 186 (458)
T 3nmz_A 108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMN 186 (458)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHHHH
Confidence 9998887766666666665 556666655420011 333 899999999764 88999999
Q ss_pred hhchHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhhccccccchhhh-hcCcHHHHHHhhcCCCHHHHHHHHH
Q 009514 228 SLQVLKLVVDALAH-----------DSSDVRSAACMCLRSVSRSIKNLSAGSFM-NETIVIPLVRLLDDTSTAVQVAALG 295 (533)
Q Consensus 228 ~~~~l~~l~~~L~~-----------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~-~~~~i~~Lv~lL~~~~~~v~~~a~~ 295 (533)
+.|++++|+.+|.. .++.++..|+++|.|++...+..+.. +. ..|.+|+|+++|++++++++..|+|
T Consensus 187 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~-i~~~~GaIp~LV~LL~s~~~~v~~~A~~ 265 (458)
T 3nmz_A 187 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT-LCSMKGCMRALVAQLKSESEDLQQVIAS 265 (458)
T ss_dssp HTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHCHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHH-HHHcCCcHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999941 34679999999999999874433433 43 3566999999999999999999999
Q ss_pred HHHHHhcC-CchhHHHHHHhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhccCChHhHHHHH-HhhcHHHHHhhhCCCCh
Q 009514 296 AISNIVVD-FTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAEDKCKEEIF-MELTASLLASLICDPEP 372 (533)
Q Consensus 296 aL~nl~~~-~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~-~~~~~~~l~~lL~~~~~ 372 (533)
+|+||+.. ...++..+.+.|+++.|+++ +.+.++.+++.++.+|.||+.+. ++.+..+. ..|+++.|+++|.+++.
T Consensus 266 aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~-~~nk~~I~~~~Gal~~Lv~LL~~~~~ 344 (458)
T 3nmz_A 266 VLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-TENKADICAVDGALAFLVGTLTYRSQ 344 (458)
T ss_dssp HHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHC-HHHHHHHHHSTTHHHHHHHHTTCCCS
T ss_pred HHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-HHHHHHHHHhcCcHHHHHHHhcCCCC
Confidence 99999974 45678899999999999997 45678899999999999998733 35677777 78999999999987654
Q ss_pred ----hHHHHHHHHHHHhhc---CCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHh
Q 009514 373 ----SVQEQALALVRNLVD---GRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQL 445 (533)
Q Consensus 373 ----~v~~~a~~~L~~l~~---~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 445 (533)
++++.++|+|+|++. ++++..+.+.+.| .++.|+.+|.+ ++.++++.|+|+|.|++.++++.+..+++
T Consensus 345 ~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G--~i~~Lv~LL~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-- 419 (458)
T 3nmz_A 345 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENN--CLQTLLQHLKS-HSLTIVSNACGTLWNLSARNPKDQEALWD-- 419 (458)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHHHHHSSC-SCHHHHHHHHHHHHHHHSSCHHHHHHHHH--
T ss_pred cchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcc--cHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCHHHHHHHHH--
Confidence 499999999999997 6777777778777 78999999987 88899999999999999888888888876
Q ss_pred hHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 446 LLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 446 ~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
.|++|.|+++|++++..+++.|+|+|.||+.
T Consensus 420 -----~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 420 -----MGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 450 (458)
T ss_dssp -----HTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred -----CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 8999999999999999999999999999996
No 21
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=290.73 Aligned_cols=366 Identities=17% Similarity=0.153 Sum_probs=288.6
Q ss_pred hHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCC----------CchhHHHHHHHHHHh
Q 009514 146 LINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL----------HPRRFEGILLALADM 215 (533)
Q Consensus 146 ~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~----------~~~~~~~a~~aL~~l 215 (533)
.++.|+..+...+.- +..+.|..+..+.+ .+..+++.|++|.|+++|..... +++++..|.|+|.++
T Consensus 33 ~~~~l~~~~~~~~~~--~~~~~ll~~~~~~~-~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni 109 (458)
T 3nmz_A 33 MVYSLLSMLGTHDKD--DMSRTLLAMSSSQD-SCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNI 109 (458)
T ss_dssp ------------CCH--HHHHHHHHHHSSTT-HHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHH--HHHHHHHHHHcCCc-HHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHH
Confidence 456666666532211 36666777765544 44667899999999999986431 268999999999999
Q ss_pred hccchhhhHhhhhhchH----------HHHHHhcCCCC--HH-----HHH-------HHHHHHHHHhhccccccchhhhh
Q 009514 216 CSKLECCRSRCLSLQVL----------KLVVDALAHDS--SD-----VRS-------AACMCLRSVSRSIKNLSAGSFMN 271 (533)
Q Consensus 216 ~~~~~~~~~~~~~~~~l----------~~l~~~L~~~~--~~-----v~~-------~a~~~L~~ls~~~~~~~~~~~~~ 271 (533)
+...++......+.+++ +.+++++.+.. .+ ++. +|+++|.|++.+ +..|.. +.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~-i~~ 187 (458)
T 3nmz_A 110 IHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHA-MNE 187 (458)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHH-HHH
T ss_pred HccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHH-HHH
Confidence 99877766666666666 66677776542 22 555 899999999887 555655 889
Q ss_pred cCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhcCCchhHHHHHH-hCcHHHHHHhhcCCCHHHHHHHHHHH
Q 009514 272 ETIVIPLVRLLDD-----------TSTAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLLVQLSKSMDSTIRLNALRAL 339 (533)
Q Consensus 272 ~~~i~~Lv~lL~~-----------~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~al~aL 339 (533)
.|++++|+.+|.. .++.++..|+|+|.|++.+....+..+.. .|.++.|++++.+++++++..|+|+|
T Consensus 188 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 267 (458)
T 3nmz_A 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267 (458)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999941 35789999999999999877666666654 45599999999999999999999999
Q ss_pred HHhhccCChHhHHHHHHhhcHHHHHhhh-CCCChhHHHHHHHHHHHhhcCCcchHHHHH-hhcCchHHHHHHHhccCCch
Q 009514 340 RNLIFLAEDKCKEEIFMELTASLLASLI-CDPEPSVQEQALALVRNLVDGRINSVEYIF-AEDGIILDAVGRQLRIASKA 417 (533)
Q Consensus 340 ~~l~~~~~~~~~~~i~~~~~~~~l~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~~~~~~~~L~~~L~~~~~~ 417 (533)
.||+.+.++++|..+.+.|+++.|+++| .+.+..+++.++++|.|++..+++....+. ..| .++.|+++|.+..+.
T Consensus 268 ~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~G--al~~Lv~LL~~~~~~ 345 (458)
T 3nmz_A 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG--ALAFLVGTLTYRSQT 345 (458)
T ss_dssp HHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTT--HHHHHHHHTTCCCSS
T ss_pred HHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcC--cHHHHHHHhcCCCCc
Confidence 9998765667899999999999999974 667899999999999999984444445555 445 789999999873322
Q ss_pred ---hHHHHHHHHHHHhcc---CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHH
Q 009514 418 ---EIEIQGMYVLGNVAT---GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRL 491 (533)
Q Consensus 418 ---~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~ 491 (533)
++++.++|+|.|++. ++++.++.+++ .|++|.|+.+|++++..++++|+|+|.|++. ++.+..
T Consensus 346 ~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-------~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~----~~~~~~ 414 (458)
T 3nmz_A 346 NTLAIIESGGGILRNVSSLIATNEDHRQILRE-------NNCLQTLLQHLKSHSLTIVSNACGTLWNLSA----RNPKDQ 414 (458)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-------TTHHHHHHHHSSCSCHHHHHHHHHHHHHHHS----SCHHHH
T ss_pred chHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-------cccHHHHHHHHcCCChHHHHHHHHHHHHHHc----CCHHHH
Confidence 599999999999996 67778888776 8999999999999999999999999999995 467888
Q ss_pred HHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514 492 VKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 492 ~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~ 529 (533)
..+.+.|++++|+++++++++.+++.|.+||.++....
T Consensus 415 ~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 415 EALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999998653
No 22
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=6e-34 Score=291.10 Aligned_cols=406 Identities=16% Similarity=0.178 Sum_probs=337.5
Q ss_pred chHHHHHhhcC-ChHHHHHHHHHHHHHhc--CChhhhhhhccccCcccHHHHHHHHhcC-ChhhHHHHHHHHHHhhhcCC
Q 009514 59 VLKRLTSLLGG-SLIQRDASLESIATIFK--NNPEVVSQFVGPDTGRTLSCIIEIVKDR-FARTRLLASLCLIVIRNASP 134 (533)
Q Consensus 59 ~i~~L~~lL~~-~~~v~~~al~aL~~l~~--~~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~ 134 (533)
.++.+++.+.+ ++.+|..|+.+|..+.. .++.... +.. ..+.++.++.+++++ ++.+|..|+.+|.+++...+
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~-~~~--~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~ 97 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDE-VIS--TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNS 97 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHH-HHT--STTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHH-HHH--cCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH
Confidence 37889998876 67899999999999753 3443322 221 127899999999988 89999999999999998653
Q ss_pred CcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHH
Q 009514 135 CYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALA 213 (533)
Q Consensus 135 ~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~ 213 (533)
. ....++..|++|.|++++++ ++.++..|+++|.+++.+.+..+..+.+.|+++.|++++.+. .++.++..++++|+
T Consensus 98 ~-~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~v~~~a~~~L~ 175 (450)
T 2jdq_A 98 L-QTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQ-NRLTMTRNAVWALS 175 (450)
T ss_dssp H-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSC-CCHHHHHHHHHHHH
T ss_pred H-HHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 3 23446678999999999985 567899999999999999988888888999999999988754 35789999999999
Q ss_pred Hhhccc-hhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHH
Q 009514 214 DMCSKL-ECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVA 292 (533)
Q Consensus 214 ~l~~~~-~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~ 292 (533)
+++... +.....+. .+++|.++++++++++.++..++++|.+++...+..... +...|+++.|+.++.+++++++..
T Consensus 176 ~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~-~~~~~~i~~L~~ll~~~~~~v~~~ 253 (450)
T 2jdq_A 176 NLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQA-VIDAGVCRRLVELLMHNDYKVVSP 253 (450)
T ss_dssp HHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHH-HHHTTTHHHHHHHTTCSCHHHHHH
T ss_pred HHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHH-HHHcCcHHHHHHHHCCCchhHHHH
Confidence 999754 33333333 789999999999999999999999999999764333333 567899999999999999999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCCh
Q 009514 293 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEP 372 (533)
Q Consensus 293 a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~ 372 (533)
|+++|++++.+.+...+.+.+.|+++.|+.++.++++.+|..|+++|++++.+ .+...+.+++.++++.+++++.++++
T Consensus 254 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~l~~~~~ 332 (450)
T 2jdq_A 254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAG-NRAQIQTVIDANIFPALISILQTAEF 332 (450)
T ss_dssp HHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 99999999988777777788889999999999999999999999999999874 35566778888999999999999999
Q ss_pred hHHHHHHHHHHHhhcC-CcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhH----------HHH
Q 009514 373 SVQEQALALVRNLVDG-RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHK----------EAV 441 (533)
Q Consensus 373 ~v~~~a~~~L~~l~~~-~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~----------~~~ 441 (533)
+++..++++|.+++.+ +++....+++.+ +++.|..++.+ ++++++..++++|.+++...+... ...
T Consensus 333 ~v~~~a~~~L~~l~~~~~~~~~~~l~~~~--~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~ 409 (450)
T 2jdq_A 333 RTRKEAAWAITNATSGGSAEQIKYLVELG--CIKPLCDLLTV-MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCAL 409 (450)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHT--CHHHHHHGGGS-SCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHCC--CHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHH
Confidence 9999999999999975 556677777766 78999999987 789999999999999987433211 122
Q ss_pred HHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 442 MDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 442 ~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
+. +.|+++.+..++.+++..+++.|..+|.++-.
T Consensus 410 l~------~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 410 IE------EAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HH------HHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred HH------HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 22 37888999999999999999999999999874
No 23
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4e-34 Score=291.31 Aligned_cols=362 Identities=13% Similarity=0.133 Sum_probs=298.4
Q ss_pred cHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHH
Q 009514 103 TLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKL 181 (533)
Q Consensus 103 ~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~ 181 (533)
.++.++.+++++++.+|..|+.+|.+++..++. .+..+...|++|.|+++|++ ++.++..|+++|.+++.++++.+..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES-AKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSS-HHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 689999999999999999999999999876543 45578899999999999984 5678999999999999988999899
Q ss_pred HHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc--------CC--------CCHH
Q 009514 182 AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL--------AH--------DSSD 245 (533)
Q Consensus 182 ~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L--------~~--------~~~~ 245 (533)
+++.|++|.|+++|... .++++++.++++|++++.+ ++.+..+++ |++|.|+++| .+ .++.
T Consensus 82 i~~~G~i~~Lv~lL~~~-~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRT-GNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHcCCHHHHHHHHhhC-CCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 99999999999999733 3578999999999999987 678888888 9999999999 32 2456
Q ss_pred HHHHHHHHHHHHhhccccccchhhhhc-CcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC--------------
Q 009514 246 VRSAACMCLRSVSRSIKNLSAGSFMNE-TIVIPLVRLLDD------TSTAVQVAALGAISNIVVDF-------------- 304 (533)
Q Consensus 246 v~~~a~~~L~~ls~~~~~~~~~~~~~~-~~i~~Lv~lL~~------~~~~v~~~a~~aL~nl~~~~-------------- 304 (533)
++..|+++|+|++.. +..+.. +.+. |++++|+.+|++ .+.++++.|+++|.|++...
T Consensus 159 v~~~a~~aL~nLs~~-~~~~~~-i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~ 236 (457)
T 1xm9_A 159 VFFNATGCLRNLSSA-DAGRQT-MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHTTS-HHHHHH-HTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHccC-HHHHHH-HHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence 777999999999987 444544 6776 999999999975 46678899999999987310
Q ss_pred ------------------------------------chhHHHHHHhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCC
Q 009514 305 ------------------------------------TTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAE 347 (533)
Q Consensus 305 ------------------------------------~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~~ 347 (533)
+...+.+.+.|+++.|+.++.+ +++.+++.|+|+|.|++.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~ 316 (457)
T 1xm9_A 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG 316 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS
T ss_pred cccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcC
Confidence 0111234456788999998875 468999999999999997654
Q ss_pred hH---h-HHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCC-----chh
Q 009514 348 DK---C-KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS-----KAE 418 (533)
Q Consensus 348 ~~---~-~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~-----~~~ 418 (533)
+. . +..+.+.++++.|+++|.+++.+++..|+|+|+|++.+. ....++..+ .++.|+++|.+.. +++
T Consensus 317 ~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~--~~~~~i~~~--~i~~Lv~lL~~~~~~~~~~~~ 392 (457)
T 1xm9_A 317 LMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMGNQ--VFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp SHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHHHH--THHHHHHTTTSCCSCSTTHHH
T ss_pred cchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH--HHHHHHHHh--hhHHHHHhccCCCCCCCCcHH
Confidence 32 2 233446899999999999999999999999999999753 456666666 6899999998731 246
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHhhcC
Q 009514 419 IEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 419 v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~-~~~v~~~a~~~L~~l~~ 481 (533)
+...++++|.|+..+++.....+.+ .|+++.|+++++++ +.++++.|+|+|.++..
T Consensus 393 v~~~~l~~l~ni~~~~~~~~~~i~~-------~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 393 ILSSACYTVRNLMASQPQLAKQYFS-------SSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHCC-------HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHH-------cCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 8889999999999887776666654 89999999999999 89999999999999985
No 24
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4.2e-33 Score=283.81 Aligned_cols=363 Identities=14% Similarity=0.133 Sum_probs=299.3
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCch-hHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSL-EQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQ 94 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~-~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~ 94 (533)
..+|.|+.+|+++++.+|+.|+.+|.++|..++ .+..+.+.|++|+|+++|.+ ++.++..|+.+|.+++.++++.+..
T Consensus 2 ~~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 468999999999999999999999999996554 47789999999999999997 6789999999999999988888777
Q ss_pred hccccCcccHHHHHHHHh-cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcC--------CC--------
Q 009514 95 FVGPDTGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLD--------DP-------- 157 (533)
Q Consensus 95 ~~~~~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~--------~~-------- 157 (533)
+.. .|+++.++++++ ++++.++..|+++|++++... ..+..+++ |++|.|++++. ++
T Consensus 82 i~~---~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~--~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~ 155 (457)
T 1xm9_A 82 TRR---QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD--ELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVV 155 (457)
T ss_dssp HHH---TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS--STHHHHHH-HHHHHHHHHTTHHHHTCC---------CC
T ss_pred HHH---cCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH--HhHHHHHh-ccHHHHHHHHhccccccccCccchhcccc
Confidence 754 689999999999 889999999999999999873 35666777 99999999992 11
Q ss_pred -CchhhhHHHHHHhhhcCCHHHHHHHHHc-CcHHHHHHhhhcC----CCCchhHHHHHHHHHHhhccc------------
Q 009514 158 -GRVGDEASFAFSSLIAEKEDMQKLAFEV-NGVDKLYNHLQKG----SLHPRRFEGILLALADMCSKL------------ 219 (533)
Q Consensus 158 -~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~~L~~~----~~~~~~~~~a~~aL~~l~~~~------------ 219 (533)
..+...|+++|.+++.+ ++.+..+.+. |+++.|+.+|.+. ..+....+.++++|.+++...
T Consensus 156 ~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~ 234 (457)
T 1xm9_A 156 DPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLE 234 (457)
T ss_dssp CHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcc
Confidence 22445899999999987 7777888887 9999999998751 123567889999998886210
Q ss_pred --------------------------------------hhhhHhhhhhchHHHHHHhcCC-CCHHHHHHHHHHHHHHhhc
Q 009514 220 --------------------------------------ECCRSRCLSLQVLKLVVDALAH-DSSDVRSAACMCLRSVSRS 260 (533)
Q Consensus 220 --------------------------------------~~~~~~~~~~~~l~~l~~~L~~-~~~~v~~~a~~~L~~ls~~ 260 (533)
+.....+...|+++.++.+|.+ +++.+++.|+++|.|++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 235 YNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTAS 314 (457)
T ss_dssp HTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTC
T ss_pred cccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccC
Confidence 0112235567889999999975 4789999999999999875
Q ss_pred ccccc----chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC------HH
Q 009514 261 IKNLS----AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD------ST 330 (533)
Q Consensus 261 ~~~~~----~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~------~~ 330 (533)
..... +..+.+.|++|.|+++|.+++.+++..|+|+|.|++.+ ...+ ..+..|+++.|++++.+.+ ++
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~-~~~~-~~i~~~~i~~Lv~lL~~~~~~~~~~~~ 392 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH-PLLH-RVMGNQVFPEVTRLLTSHTGNTSNSED 392 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-GGGH-HHHHHHTHHHHHHTTTSCCSCSTTHHH
T ss_pred cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC-HHHH-HHHHHhhhHHHHHhccCCCCCCCCcHH
Confidence 33211 12134689999999999999999999999999999974 4444 4556789999999999764 36
Q ss_pred HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCC-ChhHHHHHHHHHHHhhcCC
Q 009514 331 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDP-EPSVQEQALALVRNLVDGR 389 (533)
Q Consensus 331 ~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~-~~~v~~~a~~~L~~l~~~~ 389 (533)
+...++++|.|+..+. ++....+.+.|+++.|++++.++ +.+++..|.++|.++....
T Consensus 393 v~~~~l~~l~ni~~~~-~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 393 ILSSACYTVRNLMASQ-PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHHHHTTC-THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHHHHhcC-HHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 8889999999998754 56788888999999999999999 9999999999999998653
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.3e-29 Score=244.93 Aligned_cols=266 Identities=18% Similarity=0.168 Sum_probs=230.2
Q ss_pred hhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhhccccccchhhh-
Q 009514 203 RRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH-----------DSSDVRSAACMCLRSVSRSIKNLSAGSFM- 270 (533)
Q Consensus 203 ~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~-----------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~- 270 (533)
.....|+++|++++.+ +++|+.+++.|+++.|+.+|.. .++.++..|+++|.+++...+..+.. +.
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~-i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT-LCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH-HHH
Confidence 4567899999999976 7899999999999999999942 24689999999999999874434443 43
Q ss_pred hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-CchhHHHHHHhCcHHHHHHh-hcCCCHHHHHHHHHHHHHhhccCCh
Q 009514 271 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVD-FTTRRSTFIRLGGVKLLVQL-SKSMDSTIRLNALRALRNLIFLAED 348 (533)
Q Consensus 271 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~-~~~~~~~~~~~~~i~~L~~l-l~~~~~~~~~~al~aL~~l~~~~~~ 348 (533)
..|.+|.|+++|++++++++..|+|+|+||+.. ...++..+.+.|+++.|+++ +++.++.+++.++++|.||+.+. +
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~-~ 203 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC-T 203 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC-H
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC-h
Confidence 345699999999999999999999999999975 45678899999999999997 56778899999999999998633 4
Q ss_pred HhHHHHH-HhhcHHHHHhhhCCCCh----hHHHHHHHHHHHhhc---CCcchHHHHHhhcCchHHHHHHHhccCCchhHH
Q 009514 349 KCKEEIF-MELTASLLASLICDPEP----SVQEQALALVRNLVD---GRINSVEYIFAEDGIILDAVGRQLRIASKAEIE 420 (533)
Q Consensus 349 ~~~~~i~-~~~~~~~l~~lL~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~ 420 (533)
+.|..+. ..|+++.|+++|.+++. ++++.++++|+|++. ++++....+.+.+ .++.|+.+|.+ ++.+++
T Consensus 204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g--~i~~Lv~lL~~-~~~~v~ 280 (354)
T 3nmw_A 204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN--CLQTLLQHLKS-HSLTIV 280 (354)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT--HHHHHHHHTTC-SCHHHH
T ss_pred hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC--CHHHHHHHHcC-CChHHH
Confidence 5677777 78999999999987654 599999999999997 6677777777777 78999999987 888999
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 421 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
+.|+|+|.|++.++++.++.+++ .|++|.|+++|++++..+++.|+|+|.+|+.
T Consensus 281 ~~A~~aL~nLa~~~~~~~~~i~~-------~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 281 SNACGTLWNLSARNPKDQEALWD-------MGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334 (354)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHH-------TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH-------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc
Confidence 99999999999888888888876 8999999999999999999999999999996
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.97 E-value=2.8e-29 Score=244.28 Aligned_cols=272 Identities=19% Similarity=0.187 Sum_probs=232.0
Q ss_pred HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 009514 244 SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-----------TSTAVQVAALGAISNIVVDFTTRRSTFI 312 (533)
Q Consensus 244 ~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-----------~~~~v~~~a~~aL~nl~~~~~~~~~~~~ 312 (533)
...+..|+++|.+++.. +..|.. +.+.|++++|+.+|.. .+++++..|+|+|.|++.+....+..+.
T Consensus 46 ~~~~~~A~~aL~nls~d-~e~R~~-i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~ 123 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFD-EEHRHA-MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123 (354)
T ss_dssp GGTHHHHHHHHHHHHTS-HHHHHH-HHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHH-HHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35566899999999988 455655 8899999999999942 2478999999999999987766776665
Q ss_pred Hh-CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhh-hCCCChhHHHHHHHHHHHhhcCCc
Q 009514 313 RL-GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEPSVQEQALALVRNLVDGRI 390 (533)
Q Consensus 313 ~~-~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-L~~~~~~v~~~a~~~L~~l~~~~~ 390 (533)
.. |.+|.|++++.+++++++..|+|+|.||+...++++|..+.+.|+++.|+++ +++++.++++.++++|.|++..++
T Consensus 124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~ 203 (354)
T 3nmw_A 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 203 (354)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence 44 5599999999999999999999999999876556789999999999999997 467889999999999999998655
Q ss_pred chHHHHH-hhcCchHHHHHHHhccCCch---hHHHHHHHHHHHhcc---CChhhHHHHHHHhhHhhhhhhHHHHHHhhcc
Q 009514 391 NSVEYIF-AEDGIILDAVGRQLRIASKA---EIEIQGMYVLGNVAT---GKESHKEAVMDQLLLRAENKAQSCIIKFLQS 463 (533)
Q Consensus 391 ~~~~~i~-~~~~~~~~~L~~~L~~~~~~---~v~~~a~~~L~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~ 463 (533)
+....+. ..| .++.|+++|.+..+. ++++.++++|.|++. ++++.++.+.+ .|++|.|+++|++
T Consensus 204 ~nk~~i~~~~G--ai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-------~g~i~~Lv~lL~~ 274 (354)
T 3nmw_A 204 ENKADICAVDG--ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-------NNCLQTLLQHLKS 274 (354)
T ss_dssp HHHHHHHHSTT--HHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-------TTHHHHHHHHTTC
T ss_pred hhhHHHHHhcC--cHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-------cCCHHHHHHHHcC
Confidence 4445555 445 789999999873322 599999999999996 67777877775 8999999999999
Q ss_pred CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514 464 NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 464 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
++..++++|+|+|.|++. ++.+....+.+.|++++|+++++++++.+++.|.+||.++....+
T Consensus 275 ~~~~v~~~A~~aL~nLa~----~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~ 337 (354)
T 3nmw_A 275 HSLTIVSNACGTLWNLSA----RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337 (354)
T ss_dssp SCHHHHHHHHHHHHHHTS----SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred CChHHHHHHHHHHHHHhC----CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999995 467788999999999999999999999999999999999987643
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=8.3e-26 Score=211.77 Aligned_cols=243 Identities=24% Similarity=0.335 Sum_probs=222.5
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHH
Q 009514 273 TIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKE 352 (533)
Q Consensus 273 ~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~ 352 (533)
+.++.|+++|++++++++..|+++|.+++...+..+..+.+.|+++.|+++++++++.++..++++|.+++.. +++.+.
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC-ChHHHH
Confidence 5789999999999999999999999999988777888999999999999999999999999999999999874 467889
Q ss_pred HHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514 353 EIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 353 ~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 432 (533)
.+.+.++++.+++++++++++++..++++|.+++...++....+.+.+ .++.+.+++.+ +++.++..++++|+|++.
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~~l~~-~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG--GVEVLVKLLTS-TDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHTTC-SCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC--CHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999987777777788777 78999999987 889999999999999998
Q ss_pred CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCC
Q 009514 433 GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL 512 (533)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~ 512 (533)
+++...+.+++ .|+++.|+.++.++++.++..|+++|.+++. +.++....+.+.|+++.|+++++++++
T Consensus 158 ~~~~~~~~~~~-------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~~~~~l~~~~~i~~L~~ll~~~~~ 226 (252)
T 4hxt_A 158 GPDEAIKAIVD-------AGGVEVLVKLLTSTDSEVQKEAARALANIAS----GPTSAIKAIVDAGGVEVLQKLLTSTDS 226 (252)
T ss_dssp SCHHHHHHHHH-------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT----SBHHHHHHHHHTTHHHHHHHGGGCSCH
T ss_pred CCHHHHHHHHH-------CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc----CCHHHHHHHHHCCCHHHHHHHHCCCcH
Confidence 87776677765 7999999999999999999999999999995 567788899999999999999999999
Q ss_pred cHHHHHHHHHHHHhhhcc
Q 009514 513 DVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 513 ~v~~~a~~aL~~~~~~~~ 530 (533)
++++.|.++|.++....+
T Consensus 227 ~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 227 EVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999987654
No 28
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.1e-26 Score=238.23 Aligned_cols=470 Identities=13% Similarity=0.119 Sum_probs=327.9
Q ss_pred ccccchHHHHhhhcCC-CcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcCChhhh
Q 009514 14 LQEENMEFLLSLLNNE-SENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVV 92 (533)
Q Consensus 14 ~~~~~i~~L~~lL~~~-~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~ 92 (533)
..+|..+.+.+.+++. +..+.......|...|.+...|.++ ..++++.|.+++++ ..+|..|+-+|..+........
T Consensus 252 l~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I-~~~~~~~L~~~l~~-~~ir~lAavvL~KL~~~~~~~~ 329 (778)
T 3opb_A 252 LTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYI-TENYLQLLERSLNV-EDVQIYSALVLVKTWSFTKLTC 329 (778)
T ss_dssp STTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHH-HHHHHHHHHHHTTS-GGGHHHHHHHHHHHTGGGTCTT
T ss_pred ccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHH-HHhHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCCCCc
Confidence 3678889999888654 4556677788888999888888888 45677999999876 5788899989988865432210
Q ss_pred hhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhh-HhhhHHHHHHhcCC--CCchhhhHHHHHH
Q 009514 93 SQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGI-KTKLINNLLELLDD--PGRVGDEASFAFS 169 (533)
Q Consensus 93 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~~i~~L~~ll~~--~~~~~~~a~~~L~ 169 (533)
.. .....+.+.+.+.+++...+..|+..|..++.... .++.++ ..++++.|+++++. +..+...++.++.
T Consensus 330 ~s-----i~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~--VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~ 402 (778)
T 3opb_A 330 IN-----LKQLSEIFINAISRRIVPKVEMSVEALAYLSLKAS--VKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMA 402 (778)
T ss_dssp CC-----HHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSH--HHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHH
T ss_pred Cc-----HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHH--HHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 00 01233445566777777779999999999987643 344444 46779999999983 5678899999999
Q ss_pred hhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHH
Q 009514 170 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSA 249 (533)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~ 249 (533)
|+..+.+.... +...+..|-++.+... |+...... .+..-....+..++.+.+.|++|.|+.+++++++.+|..
T Consensus 403 NLt~~~~~~~~---e~~~l~~Lk~~A~~~~--p~~~~~d~-~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~ 476 (778)
T 3opb_A 403 NLSTLPEEXXX---XXXXXXXXXXXXXXXX--PAADKVGA-EKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQ 476 (778)
T ss_dssp HTTCCCCCCCC---CCC--------------------CCT-HHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHH
T ss_pred HhcCCCcccch---hhhhhhhhhhhccccC--cccCcccc-cccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHH
Confidence 99876543211 0123344444333211 11000000 011111111224677889999999999999999999999
Q ss_pred HHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHH---HHHHHHHHHHHHhcCCchhHHHHHH----hCcHHHHHH
Q 009514 250 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA---VQVAALGAISNIVVDFTTRRSTFIR----LGGVKLLVQ 322 (533)
Q Consensus 250 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~---v~~~a~~aL~nl~~~~~~~~~~~~~----~~~i~~L~~ 322 (533)
++++|.+++.. +..+.. +.+.|++++|++++.+.... .+..|+++|.++.....+.. ++. .|++++|+.
T Consensus 477 A~~aL~nLS~d-~~~R~~-lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~ 552 (778)
T 3opb_A 477 VVRIIYNITRS-KNFIPQ-LAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFE 552 (778)
T ss_dssp HHHHHHHHHTS-GGGHHH-HHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHH
T ss_pred HHHHHHHHcCC-HHHHHH-HHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHH
Confidence 99999999987 444555 78999999999999876443 89999999999985433221 111 389999999
Q ss_pred hhcC-CCH-------------HHHHHHHHHHHHhhccCCh---HhHHHHHHh-hcHHHHHhhhCCCChhHHHHHHHHHHH
Q 009514 323 LSKS-MDS-------------TIRLNALRALRNLIFLAED---KCKEEIFME-LTASLLASLICDPEPSVQEQALALVRN 384 (533)
Q Consensus 323 ll~~-~~~-------------~~~~~al~aL~~l~~~~~~---~~~~~i~~~-~~~~~l~~lL~~~~~~v~~~a~~~L~~ 384 (533)
++.. +.. --+..|+.||.||+...++ +.+..++++ ++++.|..+|.+++..+|..|++++.|
T Consensus 553 LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~N 632 (778)
T 3opb_A 553 LLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISN 632 (778)
T ss_dssp TSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred HcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9983 211 1267899999999986543 457888885 999999999999999999999999999
Q ss_pred hhcCCcchH-HHHHhhcCc----hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHH
Q 009514 385 LVDGRINSV-EYIFAEDGI----ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK 459 (533)
Q Consensus 385 l~~~~~~~~-~~i~~~~~~----~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 459 (533)
++.+. +.+ ..+++.+.. -++.|+.++.+ .+.+++.+|+|+|.|++.+++...+.+++. .++++.++.
T Consensus 633 L~~~~-e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts~~~~ia~~ll~~------~~gi~~Ll~ 704 (778)
T 3opb_A 633 MMSHP-LTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIATTIPLIAKELLTK------KELIENAIQ 704 (778)
T ss_dssp HHTSG-GGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCHHHHHHHTTC------HHHHHHHHH
T ss_pred HhCCc-HHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcCCChHHHHHHHHc------cccHHHHHH
Confidence 99743 332 234432211 37788888876 899999999999999987777677777762 578899999
Q ss_pred hhcc--CChhHHHHHHHHHHhhcC-CCCCCcHHHHHHHH-HCCcHHHHHhhhcCC
Q 009514 460 FLQS--NDSRLRTAAVWAVLNLTC-SSSPGSSGRLVKLH-DAGIVSHVKNMVNDP 510 (533)
Q Consensus 460 ~L~~--~~~~v~~~a~~~L~~l~~-~~~~~~~~~~~~l~-~~g~~~~L~~ll~~~ 510 (533)
++++ ++.+++..++.++.|++. ....+..+....+. .......|.++++++
T Consensus 705 lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~ 759 (778)
T 3opb_A 705 VFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRG 759 (778)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSS
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCC
Confidence 9998 899999999999999994 11122222333444 444567788888654
No 29
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.95 E-value=6.9e-26 Score=212.32 Aligned_cols=241 Identities=24% Similarity=0.307 Sum_probs=219.4
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHH
Q 009514 230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS 309 (533)
Q Consensus 230 ~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 309 (533)
|.+|.++++|+++++.++..|+++|.+++...+..+.. +.+.|+++.|+++|++++++++..|+++|+|++.+.+..+.
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH-HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 57899999999999999999999999998875544444 78899999999999999999999999999999987788888
Q ss_pred HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514 310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 389 (533)
Q Consensus 310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~ 389 (533)
.+.+.|+++.++.+++++++.++..++++|.+++.. .++.+..+.+.++++.+++++.+++++++..++++|.+++...
T Consensus 81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG-PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999863 4678889999999999999999999999999999999999987
Q ss_pred cchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHH
Q 009514 390 INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLR 469 (533)
Q Consensus 390 ~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~ 469 (533)
+.....+.+.+ .++.|..++.+ +++.++..++++|++++.+++..++.+.+ .|+++.++++++++++.++
T Consensus 160 ~~~~~~~~~~~--~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-------~~~i~~L~~ll~~~~~~v~ 229 (252)
T 4hxt_A 160 DEAIKAIVDAG--GVEVLVKLLTS-TDSEVQKEAARALANIASGPTSAIKAIVD-------AGGVEVLQKLLTSTDSEVQ 229 (252)
T ss_dssp HHHHHHHHHTT--HHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSBHHHHHHHHH-------TTHHHHHHHGGGCSCHHHH
T ss_pred HHHHHHHHHCc--CHHHHHHHHCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHH-------CCCHHHHHHHHCCCcHHHH
Confidence 77667777766 88999999987 88999999999999999877777777775 8999999999999999999
Q ss_pred HHHHHHHHhhcCC
Q 009514 470 TAAVWAVLNLTCS 482 (533)
Q Consensus 470 ~~a~~~L~~l~~~ 482 (533)
..|+|+|.+++..
T Consensus 230 ~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 230 KEAQRALENIKSG 242 (252)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999964
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=2.3e-25 Score=208.86 Aligned_cols=242 Identities=21% Similarity=0.328 Sum_probs=217.2
Q ss_pred hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh
Q 009514 271 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 350 (533)
Q Consensus 271 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~ 350 (533)
.....+.++.+|++++++++..|+++|.++.....+.+..+.+.|+++.|+++++++++.++..++++|.+++.+ +++.
T Consensus 10 ~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~ 88 (252)
T 4db8_A 10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNEQ 88 (252)
T ss_dssp TTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS-CHHH
T ss_pred ccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHH
Confidence 345688999999999999999999999887765666777899999999999999999999999999999999874 4678
Q ss_pred HHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHh
Q 009514 351 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNV 430 (533)
Q Consensus 351 ~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l 430 (533)
+..+.+.|+++.++++|+++++.++..++++|.+++.+.+.....+...+ .++.|.++|.+ +++.++..++++|+|+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~lL~~-~~~~v~~~a~~~L~~l 165 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG--ALPALVQLLSS-PNEQILQEALWALSNI 165 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCC--CHHHHHHHHhC-CCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999988765557777777 78999999987 7899999999999999
Q ss_pred ccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCC
Q 009514 431 ATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP 510 (533)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~ 510 (533)
+.+++...+.+++ .++++.|+.+|+++++.++..|+++|.+++. +.++....+.+.|+++.|++++.++
T Consensus 166 ~~~~~~~~~~~~~-------~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~----~~~~~~~~~~~~g~i~~L~~ll~~~ 234 (252)
T 4db8_A 166 ASGGNEQIQAVID-------AGALPALVQLLSSPNEQILQEALWALSNIAS----GGNEQKQAVKEAGALEKLEQLQSHE 234 (252)
T ss_dssp TTSCHHHHHHHHH-------TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT----SCHHHHHHHHHTTHHHHHHTTTTCS
T ss_pred HcCChHHHHHHHH-------CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc----CCHHHHHHHHHCCcHHHHHHHhCCC
Confidence 9887777777665 7999999999999999999999999999995 4567788899999999999999999
Q ss_pred CCcHHHHHHHHHHHHhh
Q 009514 511 CLDVKLRVKTALEQFNS 527 (533)
Q Consensus 511 ~~~v~~~a~~aL~~~~~ 527 (533)
++++++.|.++|.++..
T Consensus 235 ~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 235 NEKIQKEAQEALEKLQS 251 (252)
T ss_dssp SSHHHHTHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999999864
No 31
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=2.3e-25 Score=208.89 Aligned_cols=239 Identities=21% Similarity=0.250 Sum_probs=213.0
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHH
Q 009514 230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS 309 (533)
Q Consensus 230 ~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 309 (533)
..++.+.+.|++++++++..|+++|+++....+..+.. +.+.|+++.|+++|++++++++..|+++|+|++.+.+..+.
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~-~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHH-HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHH-HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 46889999999999999999999997764432333434 78899999999999999999999999999999987888888
Q ss_pred HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhH-HHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514 310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK-EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~-~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~ 388 (533)
.+.+.|+++.|+.+++++++.++..++++|+|++.+. ..+ ..+.+.++++.+++++.++++.++..++++|.+++.+
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC--chHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999998743 345 7888999999999999999999999999999999988
Q ss_pred CcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhH
Q 009514 389 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL 468 (533)
Q Consensus 389 ~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v 468 (533)
.++....+.+.+ +++.|..+|.+ +++.++..++++|+|++.+++..++.+++ .|+++.++.+++++++.+
T Consensus 169 ~~~~~~~~~~~~--~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-------~g~i~~L~~ll~~~~~~v 238 (252)
T 4db8_A 169 GNEQIQAVIDAG--ALPALVQLLSS-PNEQILQEALWALSNIASGGNEQKQAVKE-------AGALEKLEQLQSHENEKI 238 (252)
T ss_dssp CHHHHHHHHHTT--CHHHHHHGGGC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHH-------TTHHHHHHTTTTCSSSHH
T ss_pred ChHHHHHHHHCC--CHHHHHHHHCC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHH-------CCcHHHHHHHhCCCCHHH
Confidence 777777777777 78999999987 78999999999999999888777777775 799999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 009514 469 RTAAVWAVLNLTC 481 (533)
Q Consensus 469 ~~~a~~~L~~l~~ 481 (533)
+..|+|+|.+++.
T Consensus 239 ~~~A~~~L~~l~~ 251 (252)
T 4db8_A 239 QKEAQEALEKLQS 251 (252)
T ss_dssp HHTHHHHHHTTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999983
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.1e-24 Score=220.55 Aligned_cols=434 Identities=11% Similarity=0.062 Sum_probs=317.2
Q ss_pred HHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcC-ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHh
Q 009514 75 DASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDR-FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLEL 153 (533)
Q Consensus 75 ~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l 153 (533)
..++.++..+.--.|+.+..+.. ..+..+.+.+.+++. +..+..+..++|...+.... ++ ..+..++++.|.++
T Consensus 230 ~~~~~~l~~lfPi~p~~~s~lfl--~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~--cR-~~I~~~~~~~L~~~ 304 (778)
T 3opb_A 230 SIIVKTLSELYPSLTTLCSEIFL--TKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDET--MR-TYITENYLQLLERS 304 (778)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHS--TTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHH--HH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHc--cccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcH--HH-HHHHHhHHHHHHHH
Confidence 45556666666666777666543 355677777777554 44566666666666665432 33 35577899999999
Q ss_pred cCCCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhh-chH
Q 009514 154 LDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL-QVL 232 (533)
Q Consensus 154 l~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~-~~l 232 (533)
++. ..++..|+-+|.++..........+ ....+.+.++|.++. ...++.|++.|+.++.+ ++.|..+.+. +.+
T Consensus 305 l~~-~~ir~lAavvL~KL~~~~~~~~~si--~~La~~~~~~L~~~~--~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L 378 (778)
T 3opb_A 305 LNV-EDVQIYSALVLVKTWSFTKLTCINL--KQLSEIFINAISRRI--VPKVEMSVEALAYLSLK-ASVKIMIRSNESFT 378 (778)
T ss_dssp TTS-GGGHHHHHHHHHHHTGGGTCTTCCH--HHHHHHHHHHTTTCC--HHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHH
T ss_pred hcc-HHHHHHHHHHHHHHhcCCCCCcCcH--HHHHHHHHHHHhcCC--ccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHH
Confidence 975 4788888889988764332100001 123466777776653 33489999999999875 5677777754 669
Q ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHhhccccc-------------------------------------cchhhhhcCc
Q 009514 233 KLVVDALAH-DSSDVRSAACMCLRSVSRSIKNL-------------------------------------SAGSFMNETI 274 (533)
Q Consensus 233 ~~l~~~L~~-~~~~v~~~a~~~L~~ls~~~~~~-------------------------------------~~~~~~~~~~ 274 (533)
+.|+++++. ++..+.+.++.+|.|++...++. +...+.+.|+
T Consensus 379 ~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGv 458 (778)
T 3opb_A 379 EILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTEL 458 (778)
T ss_dssp HHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcC
Confidence 999999995 78889999999999998753321 1122578899
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHH---HHHHHHHHHHHhhccCChHhH
Q 009514 275 VIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDST---IRLNALRALRNLIFLAEDKCK 351 (533)
Q Consensus 275 i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~---~~~~al~aL~~l~~~~~~~~~ 351 (533)
+|.|+.+++++++.++..|+++|.|++. ...++..+++.|+++.|++++.+.... .|..|+++|.+++...+|...
T Consensus 459 Ip~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~ 537 (778)
T 3opb_A 459 ISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLI 537 (778)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999999995 478888999999999999999887544 899999999999876665431
Q ss_pred HHHHH-hhcHHHHHhhhCC-CCh-------------hHHHHHHHHHHHhhcCCc----chHHHHHhh-cCchHHHHHHHh
Q 009514 352 EEIFM-ELTASLLASLICD-PEP-------------SVQEQALALVRNLVDGRI----NSVEYIFAE-DGIILDAVGRQL 411 (533)
Q Consensus 352 ~~i~~-~~~~~~l~~lL~~-~~~-------------~v~~~a~~~L~~l~~~~~----~~~~~i~~~-~~~~~~~L~~~L 411 (533)
..-.. .++++.|+++|.. ++. --+..|+.+|.|++.... +....++.+ + .++.+..+|
T Consensus 538 f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~g--a~~~L~~LL 615 (778)
T 3opb_A 538 FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKV--YWSTIENLM 615 (778)
T ss_dssp SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHH--HHHHHHHGG
T ss_pred cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcC--HHHHHHHHH
Confidence 00001 3789999999983 221 126689999999998763 234667775 5 789999988
Q ss_pred ccCCchhHHHHHHHHHHHhccCChhhH-HHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHH
Q 009514 412 RIASKAEIEIQGMYVLGNVATGKESHK-EAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGR 490 (533)
Q Consensus 412 ~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 490 (533)
.+ .++.++.+|+++++|++...+ .+ +.+++.--+ ...+-++.|+.+++++|.++|.+|+|+|.+++. +.+..
T Consensus 616 ~s-~n~~VrrAA~elI~NL~~~~e-~i~~k~~~~~~~-~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts----~~~~i 688 (778)
T 3opb_A 616 LD-ENVPLQRSTLELISNMMSHPL-TIAAKFFNLENP-QSLRNFNILVKLLQLSDVESQRAVAAIFANIAT----TIPLI 688 (778)
T ss_dssp GC-SSHHHHHHHHHHHHHHHTSGG-GTGGGTSCCSSH-HHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH----HCHHH
T ss_pred hC-CCHHHHHHHHHHHHHHhCCcH-HHHHHHHhhcCc-hhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcC----CChHH
Confidence 87 788999999999999997433 32 223210000 001236899999999999999999999999973 34445
Q ss_pred HHHHHHC-CcHHHHHhhhcC--CCCcHHHHHHHHHHHHhhhc
Q 009514 491 LVKLHDA-GIVSHVKNMVND--PCLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 491 ~~~l~~~-g~~~~L~~ll~~--~~~~v~~~a~~aL~~~~~~~ 529 (533)
.+.+.+. ++++.++.++++ ++++++.|+..++.++.+++
T Consensus 689 a~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 689 AKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 6777776 799999999988 79999999999999999854
No 33
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.92 E-value=2.6e-22 Score=211.90 Aligned_cols=461 Identities=13% Similarity=0.080 Sum_probs=322.5
Q ss_pred ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514 16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQ 94 (533)
Q Consensus 16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~ 94 (533)
...++.|..+++++++.+|+.|+.+|.+++...... -.....+|.+..+..+ +..+|..+...++.++...+...
T Consensus 86 ~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~~-- 161 (588)
T 1b3u_A 86 HCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS--DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV-- 161 (588)
T ss_dssp GGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHH--
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHHH--
Confidence 345677777777888888999988888887543221 1223345566666655 56788888888888765433221
Q ss_pred hccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhc
Q 009514 95 FVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIA 173 (533)
Q Consensus 95 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~ 173 (533)
....++.+..+++++++.||..|+.++..++...+. .......+|.+..++++ +..++..|..+|..++.
T Consensus 162 -----~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~ 232 (588)
T 1b3u_A 162 -----KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQ 232 (588)
T ss_dssp -----HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 123566677888999999999999999999875432 23346789999999985 46789999999988875
Q ss_pred CCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHH
Q 009514 174 EKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMC 253 (533)
Q Consensus 174 ~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~ 253 (533)
..+.. ......+|.+.+++.+. ++.+|..++.+|+.++.... ........++.+.++++++++.+|..++++
T Consensus 233 ~~~~~---~~~~~~~~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~ 304 (588)
T 1b3u_A 233 LLPQE---DLEALVMPTLRQAAEDK--SWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLMKDCEAEVRAAASHK 304 (588)
T ss_dssp HSCHH---HHHHHTHHHHHHHHTCS--SHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred hCCHH---HHHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHHhC---cccchhHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 43221 11223567777766554 48899999999999875311 112344678999999999999999999999
Q ss_pred HHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHH
Q 009514 254 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL 333 (533)
Q Consensus 254 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 333 (533)
|..++...+...........++|.+..+++++++.+|..++++|+.++...+. .......++.+..+++++++.+|.
T Consensus 305 l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~ 381 (588)
T 1b3u_A 305 VKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRL 381 (588)
T ss_dssp HHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHH
T ss_pred HHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHH
Confidence 99998653321100012356788899999999999999999999988753222 112235778888999999999999
Q ss_pred HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 009514 334 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI 413 (533)
Q Consensus 334 ~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~ 413 (533)
.++.++..+....+++ ......++.+.+++.++++.++..++.++..++..-... .+.. .+++.+.+.+.+
T Consensus 382 ~a~~~l~~l~~~~~~~----~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~--~l~~~l~~~l~d 452 (588)
T 1b3u_A 382 NIISNLDCVNEVIGIR----QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDE--KLNSLCMAWLVD 452 (588)
T ss_dssp HHHTTCHHHHHHSCHH----HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG---GCCH--HHHHHHHHGGGC
T ss_pred HHHHHHHHHHHhcCHH----HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH---HHHH--HHHHHHHHHhcC
Confidence 9999999887654432 122345777888889999999999999998887431110 0111 166777777776
Q ss_pred CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHH
Q 009514 414 ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK 493 (533)
Q Consensus 414 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 493 (533)
+++.|+..++.+++.++..... +... ..++|.+..+++++++.+|..+++++..++.. ... .
T Consensus 453 -~~~~Vr~~a~~~l~~l~~~~~~--~~~~--------~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~-----~~~--~ 514 (588)
T 1b3u_A 453 -HVYAIREAATSNLKKLVEKFGK--EWAH--------ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV-----CGQ--D 514 (588)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHCH--HHHH--------HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH-----HHH--H
T ss_pred -CcHHHHHHHHHHHHHHHHHhCc--hhHH--------HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh-----cCH--H
Confidence 7788999999999888753211 1122 35667888888888888888888888888731 001 1
Q ss_pred HHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 494 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 494 l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
.....+++.|.++++|++++||..+.++|+.+.+
T Consensus 515 ~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 515 ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 1223467788888888788888888888887765
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=2.9e-22 Score=182.13 Aligned_cols=201 Identities=20% Similarity=0.258 Sum_probs=181.7
Q ss_pred hhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChH
Q 009514 270 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 349 (533)
Q Consensus 270 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~ 349 (533)
...++.+.|+.+|++++++++..|+++|++++......+..+.+.|+++.|+++++++++.++..|+++|+|++.+ ++.
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~ 87 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-GNE 87 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CcH
Confidence 4578899999999999999999999999999987888888999999999999999999999999999999999864 456
Q ss_pred hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHH
Q 009514 350 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN 429 (533)
Q Consensus 350 ~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~ 429 (533)
.+..+.+.++++.++++|+++++.++..++++|.|++.++++....+++.+ .++.|.++|.+ ++++++..++++|.|
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~L~~ll~~-~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG--ALPALVQLLSS-PNEQILQEALWALSN 164 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT--HHHHHHHHTTC-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcC--cHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999988877777888777 89999999988 789999999999999
Q ss_pred hccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 430 VATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
++..++..+..+.+ .|+++.|++++.++++.++..|+++|.+++.
T Consensus 165 l~~~~~~~~~~~~~-------~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 165 IASGGNEQKQAVKE-------AGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTSCHHHHHHHHH-------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHcCCcHHHHHHHH-------CCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 99987777777765 7999999999999999999999999999983
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.91 E-value=1.7e-22 Score=183.66 Aligned_cols=200 Identities=19% Similarity=0.195 Sum_probs=180.0
Q ss_pred HcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccc
Q 009514 184 EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN 263 (533)
Q Consensus 184 ~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~ 263 (533)
..+..+.|+.+|.++ ++.++..|+++|++++..++..+..+.+.|+++.++++|+++++.++..|+++|++++...+.
T Consensus 10 ~~~~~~~l~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (210)
T 4db6_A 10 HGSELPQMVQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (210)
T ss_dssp ---CHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred ccchhHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH
Confidence 346788999988765 488999999999999987888888999999999999999999999999999999999976455
Q ss_pred ccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514 264 LSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 343 (533)
Q Consensus 264 ~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~ 343 (533)
.+.. +.+.|+++.|+.+|+++++.++..|+++|+|++.+.+..++.+.+.|+++.|++++.++++.++..++++|.|++
T Consensus 88 ~~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 88 QIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHH-HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 5555 788999999999999999999999999999999877777788899999999999999999999999999999998
Q ss_pred ccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514 344 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 387 (533)
Q Consensus 344 ~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~ 387 (533)
.. ++..+..+.+.++++.|++++.++++++++.|+++|.+++.
T Consensus 167 ~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 167 SG-GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp TS-CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred cC-CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 74 46688889999999999999999999999999999999874
No 36
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.90 E-value=1.5e-21 Score=206.18 Aligned_cols=459 Identities=13% Similarity=0.135 Sum_probs=334.8
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF 95 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~ 95 (533)
..+|.+..+.++++..+|..|+.++..++..-... .....++.+..++.+ ++.||..|+.+|+.++...+... .
T Consensus 126 ~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~--~ 200 (588)
T 1b3u_A 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSA---VKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN--V 200 (588)
T ss_dssp THHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---HHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH--H
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHh--H
Confidence 34566777777888889999999999887543321 233466777777765 78999999999999986543211 1
Q ss_pred ccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcC
Q 009514 96 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAE 174 (533)
Q Consensus 96 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~ 174 (533)
....++.+..+++++++.+|..|+.+|..++...+. ......++|.+.++++++ ..+|..++.++..++..
T Consensus 201 ----~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~ 272 (588)
T 1b3u_A 201 ----KSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA 272 (588)
T ss_dssp ----HHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 134677788899999999999999999998875432 233456888898988864 56899999999888743
Q ss_pred CHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch-hhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHH
Q 009514 175 KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE-CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMC 253 (533)
Q Consensus 175 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~ 253 (533)
... .......++.+.+++.++ ++.+|..++.+|+.++.... ..+.......++|.+.++++++++.+|..++++
T Consensus 273 ~~~---~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~ 347 (588)
T 1b3u_A 273 VGP---EITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASV 347 (588)
T ss_dssp HCH---HHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTT
T ss_pred hCc---ccchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 111 112335678888888764 48899999999999876422 111112234678899999999999999999999
Q ss_pred HHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHH
Q 009514 254 LRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRL 333 (533)
Q Consensus 254 L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 333 (533)
|..++...+. . .....++|.+..++++++++++..++.+++.+....... ......+|.+..++++++..+|.
T Consensus 348 l~~l~~~~~~---~-~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~ 420 (588)
T 1b3u_A 348 IMGLSPILGK---D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRL 420 (588)
T ss_dssp GGGGHHHHCH---H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHhhH---h-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHH
Confidence 9998765322 1 223457888999999999999999999999887643321 12245778888999999999999
Q ss_pred HHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc
Q 009514 334 NALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI 413 (533)
Q Consensus 334 ~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~ 413 (533)
.++.++..++...+++ ......++.+.+++.++++.+++.++.++..++..... ...+ .. +++.+...+.+
T Consensus 421 ~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~-~~--llp~l~~~~~~ 491 (588)
T 1b3u_A 421 AIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK--EWAH-AT--IIPKVLAMSGD 491 (588)
T ss_dssp HHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH--HHHH-HH--THHHHHHTTTC
T ss_pred HHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc--hhHH-HH--HHHHHHHHhhC
Confidence 9999999987543321 11223568888899999999999999999998754221 1111 11 67777766555
Q ss_pred CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHH
Q 009514 414 ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK 493 (533)
Q Consensus 414 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 493 (533)
++..++..++++++.++.... .+.+. ..++|.+...++++++++|..+++++..+... -+. +
T Consensus 492 -~~~~~R~~a~~~l~~l~~~~~--~~~~~--------~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~--~~~-~---- 553 (588)
T 1b3u_A 492 -PNYLHRMTTLFCINVLSEVCG--QDITT--------KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPI--LDN-S---- 553 (588)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHH--HHHHH--------HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGG--SCH-H----
T ss_pred -CCHHHHHHHHHHHHHHHHhcC--HHHHH--------HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHH--hch-h----
Confidence 788999999999999875321 11222 46789999999999999999999999999852 121 1
Q ss_pred HHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 494 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 494 l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
+....++|.|.++++|++++||..|..||..+.+
T Consensus 554 ~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 554 TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence 1223467888888899999999999999998753
No 37
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.90 E-value=6.8e-22 Score=217.72 Aligned_cols=483 Identities=14% Similarity=0.126 Sum_probs=317.3
Q ss_pred ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514 16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQ 94 (533)
Q Consensus 16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~ 94 (533)
...++.++.+++++++.+|..|+.++..+.........-.-.+.++.+..++.+ ++.+|..++.+|..++...++....
T Consensus 173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 356788999999999999999999999877543221111112466777777765 6799999999999999877765332
Q ss_pred hccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhc-----------CC-------
Q 009514 95 FVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELL-----------DD------- 156 (533)
Q Consensus 95 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll-----------~~------- 156 (533)
.. ...++.++..+++.+..+|..|+.++..++........-.-.....+|.+++.+ .+
T Consensus 253 ~l----~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~ 328 (852)
T 4fdd_A 253 HM----HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGG 328 (852)
T ss_dssp GH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC--------
T ss_pred HH----HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCccccccc
Confidence 21 346677778889999999999999999988643211000112346788888887 22
Q ss_pred -----CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhch
Q 009514 157 -----PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQV 231 (533)
Q Consensus 157 -----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~ 231 (533)
...++..+..+|..++...++ .+. ...++.+.+.+.+. ++..|+.+++++++++......-. -.-.++
T Consensus 329 dd~~~~~~vr~~a~~~L~~la~~~~~---~~~-~~l~~~l~~~l~~~--~~~~R~aa~~alg~i~~~~~~~~~-~~l~~~ 401 (852)
T 4fdd_A 329 DDTISDWNLRKCSAAALDVLANVYRD---ELL-PHILPLLKELLFHH--EWVVKESGILVLGAIAEGCMQGMI-PYLPEL 401 (852)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHHTCS--SHHHHHHHHHHHHHTTTTTHHHHG-GGHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcchHHHH-HHHHHH
Confidence 113466777788777642211 111 12356666666554 589999999999999875433211 123468
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514 232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTF 311 (533)
Q Consensus 232 l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 311 (533)
++.++..++++++.||..+++++++++...+..... ..-.++++.|+..+.++++.++..|+++|.+++..........
T Consensus 402 l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~-~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~ 480 (852)
T 4fdd_A 402 IPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD-TYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY 480 (852)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT-TTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH
Confidence 999999999999999999999999998753221111 2345778889999999999999999999999986432211111
Q ss_pred HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh---------------------------------------------ccC
Q 009514 312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLI---------------------------------------------FLA 346 (533)
Q Consensus 312 ~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~---------------------------------------------~~~ 346 (533)
. .+.++.|...++..+......++.+++.++ ...
T Consensus 481 l-~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~ 559 (852)
T 4fdd_A 481 L-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATAL 559 (852)
T ss_dssp H-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 1 244555555555444333333334444332 111
Q ss_pred ChHhHHHHHHhhcHHHHHhhh-----------------CCCChhHHHHHHHHHHHhhcCCcchHHHHH-hhcCchHHHHH
Q 009514 347 EDKCKEEIFMELTASLLASLI-----------------CDPEPSVQEQALALVRNLVDGRINSVEYIF-AEDGIILDAVG 408 (533)
Q Consensus 347 ~~~~~~~i~~~~~~~~l~~lL-----------------~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~~~~~~~~L~ 408 (533)
+......+ ...++.+++++ ..++.+++..+++++..++..-.......+ ... +++.+.
T Consensus 560 g~~~~~~~--~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~--~~~~l~ 635 (852)
T 4fdd_A 560 QSGFLPYC--EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSN--ILTLMY 635 (852)
T ss_dssp GGGGHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCC--HHHHHH
T ss_pred hHhHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCc--HHHHHH
Confidence 11010000 00112222222 123567888888888888765444444444 233 788888
Q ss_pred HHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcH
Q 009514 409 RQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSS 488 (533)
Q Consensus 409 ~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 488 (533)
..+.+ +++.++..+.++++.++..........+ ..++|.+.+.+..+++.+|..|+|+++.++..- + .
T Consensus 636 ~~l~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~l--------~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~--~-~ 703 (852)
T 4fdd_A 636 QCMQD-KMPEVRQSSFALLGDLTKACFQHVKPCI--------ADFMPILGTNLNPEFISVCNNATWAIGEISIQM--G-I 703 (852)
T ss_dssp HHTTC-SSHHHHHHHHHHHHHHHHHCGGGTGGGH--------HHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHH--G-G
T ss_pred HHhCC-CChhHHHHHHHHHHHHHHHhhHHHHHHH--------HHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh--h-H
Confidence 88877 7789999999999999875554455555 357789999998888999999999999998411 1 0
Q ss_pred HHHHHHHHCCcHHHHHhhhcCCC--CcHHHHHHHHHHHHhhhc
Q 009514 489 GRLVKLHDAGIVSHVKNMVNDPC--LDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 489 ~~~~~l~~~g~~~~L~~ll~~~~--~~v~~~a~~aL~~~~~~~ 529 (533)
...... ..+++.|.+++++++ ..+++.+..+++++....
T Consensus 704 -~~~p~~-~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~ 744 (852)
T 4fdd_A 704 -EMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVC 744 (852)
T ss_dssp -GGGGGT-HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHC
T ss_pred -hHHHHH-HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhC
Confidence 111111 356899999998653 368999999999997653
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.88 E-value=3.8e-21 Score=181.97 Aligned_cols=227 Identities=21% Similarity=0.217 Sum_probs=182.5
Q ss_pred hhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHH-hcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHh
Q 009514 203 RRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD-ALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL 281 (533)
Q Consensus 203 ~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~-~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l 281 (533)
+.+..|+..|..++.+. ++...+.+.|++|.++. +|+++++.+|..|+++|++++.+.+..+.. +.+.|++|+|+.+
T Consensus 55 e~k~~Al~~L~~lv~~~-dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~-vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQ-VLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCh-hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH-HHHCCCHHHHHHH
Confidence 45778888999888643 56677889999999999 999999999999999999999875555555 7889999999999
Q ss_pred hcC-CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcH
Q 009514 282 LDD-TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTA 360 (533)
Q Consensus 282 L~~-~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~ 360 (533)
|++ +++.++..|+|+|+|++.++++..+.+.+.|+++.|+.++++++..++..|+|+|.+++.+ +++.++.+++.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 984 5899999999999999988888888899999999999999999999999999999999986 56789999999999
Q ss_pred HHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc---hHHHHHHHhccCC-chhHHHHHHHHHHHhcc
Q 009514 361 SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI---ILDAVGRQLRIAS-KAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 361 ~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~---~~~~L~~~L~~~~-~~~v~~~a~~~L~~l~~ 432 (533)
+.|+.+|.+++.++++.++++|.+++.+.+.....+-..... .++.-.+.+++.. ..++.+.+..++.++..
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~ 287 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS 287 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999998854333322211101 2222223333212 34555666666665553
No 39
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.88 E-value=3.6e-21 Score=212.00 Aligned_cols=485 Identities=12% Similarity=0.066 Sum_probs=314.6
Q ss_pred ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHH-------hcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcC
Q 009514 16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLF-------DAGVLKRLTSLLGG-SLIQRDASLESIATIFKN 87 (533)
Q Consensus 16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~-------~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~ 87 (533)
++.++.|+.+++++++.+++.+..+|..++..... .+. -...++.+++.+.+ +..+|..|+.++..+...
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~--~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAE--ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTT--HHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHH--HhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Confidence 56889999999999999999999999998854322 111 12356666666665 679999999999987755
Q ss_pred ChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHH
Q 009514 88 NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASF 166 (533)
Q Consensus 88 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~ 166 (533)
.+...... ....++.++.++.++++.+|..|+.+|..++...+..... . -.++++.+++++++ ++.++..|++
T Consensus 205 ~~~~~~~~----~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~-~-l~~l~~~l~~~~~~~~~~vr~~a~e 278 (852)
T 4fdd_A 205 RTQALMLH----IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP-H-MHNIVEYMLQRTQDQDENVALEACE 278 (852)
T ss_dssp TCHHHHTS----HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG-G-HHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred ccHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH-H-HHHHHHHHHHHccCCcHHHHHHHHH
Confidence 43321111 1356778888899999999999999999999865432111 1 23688888888885 4578999999
Q ss_pred HHHhhhcCCHHHHHHH--HHcCcHHHHHHhhh----------cC---C-------CCchhHHHHHHHHHHhhccchhhhH
Q 009514 167 AFSSLIAEKEDMQKLA--FEVNGVDKLYNHLQ----------KG---S-------LHPRRFEGILLALADMCSKLECCRS 224 (533)
Q Consensus 167 ~L~~l~~~~~~~~~~~--~~~~~l~~L~~~L~----------~~---~-------~~~~~~~~a~~aL~~l~~~~~~~~~ 224 (533)
.+..++.... ..+.+ .-...+|.+++.+. .. + .++.+|..+..+|..++...+ .
T Consensus 279 ~l~~l~~~~~-~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~---~ 354 (852)
T 4fdd_A 279 FWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR---D 354 (852)
T ss_dssp HHHHHTTSTT-HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG---G
T ss_pred HHHHHhcchh-HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc---H
Confidence 9998876432 11111 00123566666551 11 0 234578899999998885332 2
Q ss_pred hhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 009514 225 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF 304 (533)
Q Consensus 225 ~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 304 (533)
.+ -..+++.+.++++++++.+|..|+++|++++...+..-.. .-.++++.++.+++++++.++..|+|++++++...
T Consensus 355 ~~-~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~--~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~ 431 (852)
T 4fdd_A 355 EL-LPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP--YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWV 431 (852)
T ss_dssp GG-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG--GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHH
T ss_pred HH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 22 2357888889999999999999999999998764321111 33567899999999999999999999999988532
Q ss_pred chhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHH
Q 009514 305 TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRN 384 (533)
Q Consensus 305 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~ 384 (533)
........-.+.++.++..+.++++.+|.+|+++|.+++...++.....+ ...++.+..+++..+.+....++.++..
T Consensus 432 ~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~~~~~~~~~~~ai~~ 509 (852)
T 4fdd_A 432 VSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGT 509 (852)
T ss_dssp HHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 21100111236788888989888999999999999999864433211111 1223444444443333333223333333
Q ss_pred hhc----------------------------CCcchHHHHHh-------hcC--------chHHHHHHHhcc--------
Q 009514 385 LVD----------------------------GRINSVEYIFA-------EDG--------IILDAVGRQLRI-------- 413 (533)
Q Consensus 385 l~~----------------------------~~~~~~~~i~~-------~~~--------~~~~~L~~~L~~-------- 413 (533)
++. .+++. ..+++ .-| .+++.+...+..
T Consensus 510 l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~ 588 (852)
T 4fdd_A 510 LADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDL-FPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLN 588 (852)
T ss_dssp HHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTH-HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHH-HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221 11110 00100 000 122222222221
Q ss_pred --------CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCC
Q 009514 414 --------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP 485 (533)
Q Consensus 414 --------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~ 485 (533)
.++.+++..++++++.++.+........+. +.++++.+...+.++++.+|..+.++++.++..
T Consensus 589 ~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~------~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~--- 659 (852)
T 4fdd_A 589 NAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVA------RSNILTLMYQCMQDKMPEVRQSSFALLGDLTKA--- 659 (852)
T ss_dssp HHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHH------TCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH---
T ss_pred hcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhc------CCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHH---
Confidence 124567888888988888644444444442 257889999999999999999999999999841
Q ss_pred CcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514 486 GSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 486 ~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~ 529 (533)
...+...++. . +++.+.+.+++.++.++..|.++++.+....
T Consensus 660 ~~~~~~~~l~-~-~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~ 701 (852)
T 4fdd_A 660 CFQHVKPCIA-D-FMPILGTNLNPEFISVCNNATWAIGEISIQM 701 (852)
T ss_dssp CGGGTGGGHH-H-HHHHHHHTCCTTSHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHH-H-HHHHHHHHcCccchHHHHHHHHHHHHHHHHh
Confidence 1111112222 1 6788888887777889999999999986554
No 40
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.86 E-value=1.3e-20 Score=170.47 Aligned_cols=199 Identities=21% Similarity=0.185 Sum_probs=169.9
Q ss_pred hHHHHHHhcCCCCH--HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514 231 VLKLVVDALAHDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR 308 (533)
Q Consensus 231 ~l~~l~~~L~~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 308 (533)
.+|.++++|+++++ .++..|+++|.+++...+..+.. +.+.|++|+|+++|++++++++..|+|+|.|++.+.++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~-I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKR-VNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHH-HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHH-HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 58999999999888 89999999999999764555555 7889999999999999999999999999999998778899
Q ss_pred HHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC----------------CCC
Q 009514 309 STFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC----------------DPE 371 (533)
Q Consensus 309 ~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~----------------~~~ 371 (533)
..+.+.|+|+.|++++. +++..+++++..+|.||+.. +..|..+.+. +++.|+.++. ..+
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~--~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN--DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC--hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 99999999999999998 57899999999999999763 4578888764 6999998763 136
Q ss_pred hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccC-----CchhHHHHHHHHHHHhccCC
Q 009514 372 PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA-----SKAEIEIQGMYVLGNVATGK 434 (533)
Q Consensus 372 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~-----~~~~v~~~a~~~L~~l~~~~ 434 (533)
.+++++|.++|+|++..+++....+.+++| +++.|+.++++. .+.+.++.|+.+|.|++..-
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~G-li~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDG-LIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL 231 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTT-HHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCC-cHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence 799999999999999987777777777766 778888887652 35688999999999998753
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.86 E-value=7.7e-20 Score=173.02 Aligned_cols=228 Identities=14% Similarity=0.107 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHh
Q 009514 245 DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR-LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL 323 (533)
Q Consensus 245 ~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~l 323 (533)
+-+..|...|.+++...++ ... +...|++|+|+. +|++++++++..|+|+|+|++.+++..+..+++.|+++.|+.+
T Consensus 55 e~k~~Al~~L~~lv~~~dn-a~~-~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 55 QEREGALELLADLCENMDN-AAD-FCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHTSHHH-HHH-HHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChhh-HHH-HHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 5677788888888876443 223 678899999999 9999999999999999999999888889999999999999999
Q ss_pred hcC-CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCc
Q 009514 324 SKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGI 402 (533)
Q Consensus 324 l~~-~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~ 402 (533)
+.+ ++..++..|+|+|+|++.+. +...+.+.+.++++.|+++|++++.+++..|+|+|++++.++++.+..+.+.|
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~-~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g-- 209 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQ-EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG-- 209 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT--
T ss_pred HccCCCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC--
Confidence 985 57899999999999999754 45677788899999999999999999999999999999988888888999888
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHhhc
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLT 480 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~--~~~v~~~a~~~L~~l~ 480 (533)
+++.|+.+|.+ +++.+++.++++|+|++.+.+......-.. ...-...+..-++.+++. +.+..+.|...+.++-
T Consensus 210 ~i~~Lv~LL~~-~d~~v~~~al~aL~~l~~~~~~~~~~~~~~--~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 210 MVQQLVALVRT-EHSPFHEHVLGALCSLVTDFPQGVRECREP--ELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHHHHTS-CCSTHHHHHHHHHHHHHTTCHHHHHHHHCG--GGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHcC-CChhHHHHHHHHHHHHHhCChhHHHHHhcc--HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 89999999988 899999999999999998755332221100 000011222223445533 3456666766666655
No 42
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=169.70 Aligned_cols=195 Identities=14% Similarity=0.124 Sum_probs=167.3
Q ss_pred hHHHHHHhcCC-CC--chhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhh
Q 009514 146 LINNLLELLDD-PG--RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC 222 (533)
Q Consensus 146 ~i~~L~~ll~~-~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~ 222 (533)
.+|.|+++|.. ++ .++..+++.+.+++..++..++.+++.|++|.|+++|.++ ++.+++.|+++|.+++..++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~--~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ--NEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHH
Confidence 57999999984 44 6788999999999998888888999999999999999875 4889999999999999877889
Q ss_pred hHhhhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc----------------CC
Q 009514 223 RSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD----------------DT 285 (533)
Q Consensus 223 ~~~~~~~~~l~~l~~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~----------------~~ 285 (533)
+..+.+.|++|.|+++|. +++..+++.|+.+|++|+... ..+.. +.+ +++|+|++++. ..
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~-i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNL-MIT-EALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHH-HHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHH-HHh-ccHHHHHHHHhccccCCcccccccccccc
Confidence 999999999999999998 579999999999999999773 33444 554 57999998762 13
Q ss_pred CHHHHHHHHHHHHHHhcCCchhHHHHHHh-CcHHHHHHhhcC------CCHHHHHHHHHHHHHhhcc
Q 009514 286 STAVQVAALGAISNIVVDFTTRRSTFIRL-GGVKLLVQLSKS------MDSTIRLNALRALRNLIFL 345 (533)
Q Consensus 286 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~~-~~i~~L~~ll~~------~~~~~~~~al~aL~~l~~~ 345 (533)
++++++.|+++|+|++...++.++.+.+. |+|+.|+.+++. .+...+++++.+|.||++.
T Consensus 164 ~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 77999999999999998777888888876 668999999875 2567899999999999874
No 43
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.83 E-value=6.6e-17 Score=163.27 Aligned_cols=450 Identities=11% Similarity=0.118 Sum_probs=325.2
Q ss_pred ccchHHHHhhhcC-CCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC---ChHHHHHHHHHHHHHhcCChhh
Q 009514 16 EENMEFLLSLLNN-ESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG---SLIQRDASLESIATIFKNNPEV 91 (533)
Q Consensus 16 ~~~i~~L~~lL~~-~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~v~~~al~aL~~l~~~~~~~ 91 (533)
+..|+.|..=+.+ .-..-|+.|+..|..+++ +++.. +..++++.|+..|+. +.+.-..+++.|.++...+++-
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk--~y~~~-Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSK--KYRLE-VGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTT--TTTTH-HHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC---
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHH--HhHHH-hhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcc
Confidence 4577888877764 346668889999998875 34443 446688999999975 4467778999998765433321
Q ss_pred -----------------hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhH-hhhHHHHHHh
Q 009514 92 -----------------VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIK-TKLINNLLEL 153 (533)
Q Consensus 92 -----------------~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~~i~~L~~l 153 (533)
...|. ...+.++.++.++++++..+|.+++++|..++...+.+.++.+.. .++++.|+.+
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~--~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFI--KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp -----------CHHHHHHHHHH--HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred cccccccccchHHHHHHHHHHH--cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 11221 235679999999999999999999999999999887656776774 4999999999
Q ss_pred cCCC-CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCC--CchhHHHHHHHHHHhhccchhhhHhhhhhc
Q 009514 154 LDDP-GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL--HPRRFEGILLALADMCSKLECCRSRCLSLQ 230 (533)
Q Consensus 154 l~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~--~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~ 230 (533)
|+++ ..+|.++...|..++.++++.|+.+.-+|++++|++++..... -..+.+.|+..+.+|..++..++..+.+.|
T Consensus 175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~ 254 (651)
T 3grl_A 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS 254 (651)
T ss_dssp GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence 9965 6789999999999999999999999889999999999886531 124678899999999999999999999999
Q ss_pred hHHHHHHhcCCCCH------HH---HHHHHHHHHHHhhcccc-----ccchhhhhcCcHHHHHHhhcCC--CHHHHHHHH
Q 009514 231 VLKLVVDALAHDSS------DV---RSAACMCLRSVSRSIKN-----LSAGSFMNETIVIPLVRLLDDT--STAVQVAAL 294 (533)
Q Consensus 231 ~l~~l~~~L~~~~~------~v---~~~a~~~L~~ls~~~~~-----~~~~~~~~~~~i~~Lv~lL~~~--~~~v~~~a~ 294 (533)
++|.|..+++.+.. .. ...+..+++-+...... ..+..+.+.|+++.|++++..+ ...++..|.
T Consensus 255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al 334 (651)
T 3grl_A 255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI 334 (651)
T ss_dssp CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence 99999999974422 11 22244555555433111 1122267899999999998755 788999999
Q ss_pred HHHHHHhcCCchhHHHHHHhC---------cHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCChHhHHHHHHhhc-----
Q 009514 295 GAISNIVVDFTTRRSTFIRLG---------GVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELT----- 359 (533)
Q Consensus 295 ~aL~nl~~~~~~~~~~~~~~~---------~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~----- 359 (533)
.+++.+..+++..++.+.+.. .+..|+.++.+. ...+|.+++.++.....+. ++.+..+.....
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N-~~~Q~~i~~~llp~~~~ 413 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKN-QKGQGEIVSTLLPSTID 413 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTSSCCCC
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCC-HHHHHHHHHhcCCcccc
Confidence 999999999988888777543 334455556553 4788999999999988743 445555554410
Q ss_pred -------H-HHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhh-----cC----chHHHHHHHhccCCchhHHHH
Q 009514 360 -------A-SLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE-----DG----IILDAVGRQLRIASKAEIEIQ 422 (533)
Q Consensus 360 -------~-~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-----~~----~~~~~L~~~L~~~~~~~v~~~ 422 (533)
. ..+..-+.+.|+.-..-|+.+|.++..+++...+.+++- .| ..++.+...|....++.++..
T Consensus 414 ~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vg 493 (651)
T 3grl_A 414 ATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVG 493 (651)
T ss_dssp CTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHH
T ss_pred cCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHH
Confidence 1 123444555666555567778888888877555555441 11 267777777776567788888
Q ss_pred HHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc--CC--hhHHHHHHHHHH
Q 009514 423 GMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS--ND--SRLRTAAVWAVL 477 (533)
Q Consensus 423 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~--~~--~~v~~~a~~~L~ 477 (533)
-+..|+.+..+++.....++. +...++.|+..+.+ ++ .-++--|+..|+
T Consensus 494 yL~LL~~WL~e~p~AV~dFL~------~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLG 546 (651)
T 3grl_A 494 LLMLLCTWLSNCPIAVTHFLH------NSANVPFLTGQIAENLGEEEQLVQGLCALLLG 546 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH------STTHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHc------CCchHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 888999898888887777776 35567999988753 22 234544444443
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.81 E-value=2.9e-18 Score=180.18 Aligned_cols=448 Identities=16% Similarity=0.175 Sum_probs=261.4
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhh
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQF 95 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~ 95 (533)
.+.+.++.++.+++..+++.+...+..+++..... . .-.+..+.+.|.+ ++.+|..|+.+|+++. .++...
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~---~-~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~-- 120 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDM---A-IMAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITE-- 120 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHH---H-HTTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHH--
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchH---H-HHHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHH--
Confidence 45566777777777777777777776665421111 1 2234556666665 6788888988888875 344432
Q ss_pred ccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcC
Q 009514 96 VGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAE 174 (533)
Q Consensus 96 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~ 174 (533)
..++.+.++++++++.||..|+.++.+++...++ .....+++|.+.++|+|+ +.++..|..+|..+..+
T Consensus 121 ------~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~----~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 121 ------YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ----MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp ------HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC----CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred ------HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh----hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence 3467788899999999999999999999986653 233458999999999864 57899999999999876
Q ss_pred CHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHH
Q 009514 175 KEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCL 254 (533)
Q Consensus 175 ~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L 254 (533)
++.........+.++.|++.+.+.+ +-.+...+.+++.++..++.. ....++.+..++++.++.|+..|++++
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~--~~~q~~il~~l~~l~~~~~~~-----~~~~l~~l~~~l~~~~~~V~~ea~~~i 263 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECT--EWGQIFILDCLSNYNPKDDRE-----AQSICERVTPRLSHANSAVVLSAVKVL 263 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCC--HHHHHHHHHHHHTSCCCSHHH-----HHHHHHHHTTCSCSSTTHHHHHHHHHH
T ss_pred CCCccchhccHHHHHHHHHcCCCCC--chHHHHHHHHHHHhCCCChHH-----HHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 5421000001123566777666553 556777888888877543322 235688888899999999999999999
Q ss_pred HHHhhcc---ccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHH------------------HH-
Q 009514 255 RSVSRSI---KNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST------------------FI- 312 (533)
Q Consensus 255 ~~ls~~~---~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~------------------~~- 312 (533)
..+.... +.... .....+.++|+.++. +++++|..|+.+|..+....+..... .+
T Consensus 264 ~~l~~~~~~~~~~~~--~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~ 340 (591)
T 2vgl_B 264 MKFLELLPKDSDYYN--MLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLD 340 (591)
T ss_dssp HHSCCSCCBTTBSHH--HHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHH
T ss_pred HHHhhccCCCHHHHH--HHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHH
Confidence 9986421 11111 122456678887764 88999999999999987633221100 00
Q ss_pred ------Hh----CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHH
Q 009514 313 ------RL----GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV 382 (533)
Q Consensus 313 ------~~----~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L 382 (533)
.. .+++.|..++.+.+.++|..+++++++++...++ .....++.+++++.+....+...++..+
T Consensus 341 ~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~------~~~~~v~~Ll~ll~~~~~~v~~e~i~~l 414 (591)
T 2vgl_B 341 IMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ------SAERCVSTLLDLIQTKVNYVVQEAIVVI 414 (591)
T ss_dssp HHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh------HHHHHHHHHHHHHcccchHHHHHHHHHH
Confidence 00 1222233333333444444444444444332110 0112344444444444444444444444
Q ss_pred HHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 009514 383 RNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ 462 (533)
Q Consensus 383 ~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~ 462 (533)
.++....++.. + .++..|...+.+...++++..++|+||.++...++ . ...+..+++.+.
T Consensus 415 ~~ii~~~p~~~-----~--~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~-~------------~~~l~~l~~~~~ 474 (591)
T 2vgl_B 415 RDIFRKYPNKY-----E--SIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN-A------------DELLESFLEGFH 474 (591)
T ss_dssp HHHHHHSCSSC-----C--TTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT-H------------HHHHHHHSTTCS
T ss_pred HHHHHHCcchH-----H--HHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC-H------------HHHHHHHHHhhc
Confidence 44433322210 0 13455555555444566666666666666543321 1 122334444444
Q ss_pred cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhh-cC-CCCcHHHHHHHHHHHHhh
Q 009514 463 SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV-ND-PCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 463 ~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll-~~-~~~~v~~~a~~aL~~~~~ 527 (533)
+.+..+|..++.++..+.... +.. . ...+..+.+.. .+ .+++||.||...+.-+..
T Consensus 475 ~~~~~vr~~~l~a~~Kl~~~~-p~~-------~-~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 475 DESTQVQLTLLTAIVKLFLKK-PSE-------T-QELVQQVLSLATQDSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp SSCHHHHHHHHHHHHHHHTTC-CST-------T-HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTTTT
T ss_pred cCCHHHHHHHHHHHHHHHhcC-chH-------H-HHHHHHHHHHhhhcCCChHHHHHHHHHHHHHCc
Confidence 455666666666666666411 110 0 01333344443 33 577899998887766543
No 45
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.81 E-value=3.2e-17 Score=172.30 Aligned_cols=410 Identities=12% Similarity=0.098 Sum_probs=288.1
Q ss_pred chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514 18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV 96 (533)
Q Consensus 18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~ 96 (533)
.++.+.+-|+++++.++..|..+++++. .++.- ...++.+.+++.+ ++.||..|+.++.++...+|+...
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~-~~~~~-----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~--- 157 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIR-VDKIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE--- 157 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCC-SGGGH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC-hHHHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---
Confidence 4577778889999999999999999987 33321 2245678888876 789999999999999887766432
Q ss_pred cccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCC
Q 009514 97 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEK 175 (533)
Q Consensus 97 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~ 175 (533)
..+.++.+..++.++++.|+.+|+.+|..++...+... ......+.++.|++.+.+ +++.+.....++.++...+
T Consensus 158 ---~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~-~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~ 233 (591)
T 2vgl_B 158 ---DQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSN-LLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD 233 (591)
T ss_dssp ---HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCC-SCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS
T ss_pred ---cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCcc-chhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC
Confidence 13467888899999999999999999999988765321 112234567777777764 5567778888888887655
Q ss_pred HHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhcc---chhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHH
Q 009514 176 EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK---LECCRSRCLSLQVLKLVVDALAHDSSDVRSAACM 252 (533)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~---~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~ 252 (533)
+.... ..++.+..++.+. ++.++..|++++..+... +++.... .-..+.+.++.++. +++.+|..++.
T Consensus 234 ~~~~~-----~~l~~l~~~l~~~--~~~V~~ea~~~i~~l~~~~~~~~~~~~~-~~~~~~~~L~~L~~-~d~~vr~~aL~ 304 (591)
T 2vgl_B 234 DREAQ-----SICERVTPRLSHA--NSAVVLSAVKVLMKFLELLPKDSDYYNM-LLKKLAPPLVTLLS-GEPEVQYVALR 304 (591)
T ss_dssp HHHHH-----HHHHHHTTCSCSS--TTHHHHHHHHHHHHSCCSCCBTTBSHHH-HHHHTHHHHHHHTT-SCHHHHHHHHH
T ss_pred hHHHH-----HHHHHHHHHHcCC--ChHHHHHHHHHHHHHhhccCCCHHHHHH-HHHHHHHHHHHHhc-CCccHHHHHHH
Confidence 44322 3466777767654 478899999999998632 2222222 12345677776654 78899999999
Q ss_pred HHHHHhhccccccc------------------hh------hhhc----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 009514 253 CLRSVSRSIKNLSA------------------GS------FMNE----TIVIPLVRLLDDTSTAVQVAALGAISNIVVDF 304 (533)
Q Consensus 253 ~L~~ls~~~~~~~~------------------~~------~~~~----~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 304 (533)
+|..+....+..-. .+ +... .+++.|..++.+.+.+++..++++|++++..+
T Consensus 305 ~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~ 384 (591)
T 2vgl_B 305 NINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV 384 (591)
T ss_dssp HHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence 99988753222100 00 1122 23455666677889999999999999999766
Q ss_pred chhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC-CCChhHHHHHHHHHH
Q 009514 305 TTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALVR 383 (533)
Q Consensus 305 ~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L~ 383 (533)
+... ...++.|+.++......++..++.++.++....+ +. ...+++.+.+.+. ..+++++..++|+|+
T Consensus 385 ~~~~-----~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p-~~-----~~~~v~~L~~~l~~~~~~~~~~~~~wilG 453 (591)
T 2vgl_B 385 EQSA-----ERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYP-NK-----YESIIATLCENLDSLDEPDARAAMIWIVG 453 (591)
T ss_dssp HHHH-----HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSC-SS-----CCTTHHHHHHTTTTCCSHHHHHHHHHHHH
T ss_pred hhHH-----HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCc-ch-----HHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4322 3579999999999999999999999999876433 22 2456788888886 467889999999999
Q ss_pred HhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhh-c
Q 009514 384 NLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL-Q 462 (533)
Q Consensus 384 ~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L-~ 462 (533)
..+...++. . .+++.+.+.+.. .++.|+..++.++..+....++.. ...+..+.+.. .
T Consensus 454 ey~~~~~~~-~-------~~l~~l~~~~~~-~~~~vr~~~l~a~~Kl~~~~p~~~------------~~~i~~ll~~~~~ 512 (591)
T 2vgl_B 454 EYAERIDNA-D-------ELLESFLEGFHD-ESTQVQLTLLTAIVKLFLKKPSET------------QELVQQVLSLATQ 512 (591)
T ss_dssp TTCTTCTTH-H-------HHHHHHSTTCSS-SCHHHHHHHHHHHHHHHTTCCSTT------------HHHHHHHHHHHHT
T ss_pred cccccccCH-H-------HHHHHHHHhhcc-CCHHHHHHHHHHHHHHHhcCchHH------------HHHHHHHHHHhhh
Confidence 998665431 1 145555444443 567899999999999987654321 13445566654 3
Q ss_pred -cCChhHHHHHHHHHHhhcC
Q 009514 463 -SNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 463 -~~~~~v~~~a~~~L~~l~~ 481 (533)
+.|.++|..|...+.-+..
T Consensus 513 d~~d~evrdRA~~y~~ll~~ 532 (591)
T 2vgl_B 513 DSDNPDLRDRGYIYWRLLST 532 (591)
T ss_dssp TCCCHHHHHHHHHHHTTTTT
T ss_pred cCCChHHHHHHHHHHHHHCc
Confidence 3678999999988776653
No 46
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.80 E-value=5.6e-17 Score=179.01 Aligned_cols=478 Identities=14% Similarity=0.137 Sum_probs=311.6
Q ss_pred cchHHHHhhhcCC--CcchhHHHHHHHHHhhcCch-h-HHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhh
Q 009514 17 ENMEFLLSLLNNE--SENVSGLGASIISHSCKTSL-E-QKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEV 91 (533)
Q Consensus 17 ~~i~~L~~lL~~~--~~~v~~~a~~~l~~~~~~~~-~-~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~ 91 (533)
..++.++..+.++ ++.++..|+.++..+...-. + .........++.+...+.+ ++.+|..++.+|..++...++.
T Consensus 179 ~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~ 258 (861)
T 2bpt_A 179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF 258 (861)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788876 78899999999988653211 1 0000112245566666665 6799999999999998655432
Q ss_pred hhhhccccCc-ccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCC----------------cchhhhhHhhhHHHHHHhc
Q 009514 92 VSQFVGPDTG-RTLSCIIEIVKDRFARTRLLASLCLIVIRNASPC----------------YLQDVGIKTKLINNLLELL 154 (533)
Q Consensus 92 ~~~~~~~~~~-~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~----------------~~~~~~~~~~~i~~L~~ll 154 (533)
..... . ..++.+...+++.+..++..|..++..++..... +... ..-..++|.++..+
T Consensus 259 ~~~~l----~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~~ll~~l 333 (861)
T 2bpt_A 259 MKPYM----EQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFAL-SSIKDVVPNLLNLL 333 (861)
T ss_dssp CHHHH----HHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHH-HHHHHHHHHHHHHT
T ss_pred HHHHH----HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHH-HHHHHHHHHHHHHH
Confidence 21110 2 3455566677888999999999999888764210 0011 11256888898888
Q ss_pred CCC--------CchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch-hhhHh
Q 009514 155 DDP--------GRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE-CCRSR 225 (533)
Q Consensus 155 ~~~--------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~-~~~~~ 225 (533)
.+. ..++..+..+|..++..... .+. ...++.+.+.+.+. ++..|+.++++++.++.... ..-..
T Consensus 334 ~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~~~ 407 (861)
T 2bpt_A 334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---HIL-EPVLEFVEQNITAD--NWRNREAAVMAFGSIMDGPDKVQRTY 407 (861)
T ss_dssp TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred HhcccccccccCcHHHHHHHHHHHHHHHccH---hHH-HHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHcCCCHHHHHH
Confidence 631 24667778888877642211 000 01234455555443 58899999999999986432 11111
Q ss_pred hhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccc-cchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 009514 226 CLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL-SAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDF 304 (533)
Q Consensus 226 ~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~-~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 304 (533)
.. ..+++.+++.++++++.+|..+++++++++...+.. ... -.-..+++.++..+.++ ++++..|++++.+++...
T Consensus 408 ~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~-~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~ 484 (861)
T 2bpt_A 408 YV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQ-QHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQL 484 (861)
T ss_dssp HH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTT-TTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCH-HHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhc
Confidence 11 257899999999999999999999999998653221 001 12346678888888775 999999999999988642
Q ss_pred c-----hhHHHHHHhCcHHHHHHhhcCCC--HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC--------
Q 009514 305 T-----TRRSTFIRLGGVKLLVQLSKSMD--STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-------- 369 (533)
Q Consensus 305 ~-----~~~~~~~~~~~i~~L~~ll~~~~--~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~-------- 369 (533)
. ..... + ...++.++..+.+.+ +.+|..++++++.++...+......+ . ..++.+++.+.+
T Consensus 485 ~~~~~~~l~~~-~-~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~-~l~~~l~~~l~~~~~~~~~i 560 (861)
T 2bpt_A 485 AEATPSPIYNF-Y-PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-A-SISTFVMDKLGQTMSVDENQ 560 (861)
T ss_dssp SSSSSCGGGGG-H-HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-H-HHHHHHHHHHHHHTTSCGGG
T ss_pred ccccchhhHHH-H-HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-H-HHHHHHHHHHHHHHhhhccc
Confidence 2 11111 1 245778888887543 78999999999999876654332222 1 134444444431
Q ss_pred -------CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCch-hHHHHHHHHHHHhccCChhhHHHH
Q 009514 370 -------PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKA-EIEIQGMYVLGNVATGKESHKEAV 441 (533)
Q Consensus 370 -------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~-~v~~~a~~~L~~l~~~~~~~~~~~ 441 (533)
....++..++.+|.+++...+....... ..+++.+...+.+ .++ .+++.++.+++.++..........
T Consensus 561 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~l~~~l~~~l~~-~~~~~v~~~~~~~l~~l~~~~~~~~~~~ 636 (861)
T 2bpt_A 561 LTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA---DMLMGLFFRLLEK-KDSAFIEDDVFYAISALAASLGKGFEKY 636 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH---HHHHHHHHHHHHS-TTGGGTHHHHHHHHHHHHHHHGGGGHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHcc-CCCCcHHHHHHHHHHHHHHHHhhhHHHH
Confidence 2356788899999988865443211111 1267777777776 445 899999999999886433333344
Q ss_pred HHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCC--CcHHHHHH
Q 009514 442 MDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPC--LDVKLRVK 519 (533)
Q Consensus 442 ~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~--~~v~~~a~ 519 (533)
+ ..++|.+...++++++.+|..+++++..++..- + +...... ..+++.+.+.+++++ ++++..+.
T Consensus 637 l--------~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~--~--~~~~~~~-~~l~~~l~~~l~~~~~~~~vr~~~~ 703 (861)
T 2bpt_A 637 L--------ETFSPYLLKALNQVDSPVSITAVGFIADISNSL--E--EDFRRYS-DAMMNVLAQMISNPNARRELKPAVL 703 (861)
T ss_dssp H--------HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT--G--GGGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHH
T ss_pred H--------HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh--c--hhccchH-HHHHHHHHHHhCCccccHhhhHHHH
Confidence 4 357889999998888899999999999988521 1 1111211 345677888887654 88999999
Q ss_pred HHHHHHhhhc
Q 009514 520 TALEQFNSFD 529 (533)
Q Consensus 520 ~aL~~~~~~~ 529 (533)
.+++.+....
T Consensus 704 ~~l~~l~~~~ 713 (861)
T 2bpt_A 704 SVFGDIASNI 713 (861)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887643
No 47
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.78 E-value=8e-17 Score=177.76 Aligned_cols=479 Identities=11% Similarity=0.073 Sum_probs=309.3
Q ss_pred chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcC---chHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhh
Q 009514 18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAG---VLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVV 92 (533)
Q Consensus 18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g---~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~ 92 (533)
.-+.|+..|.++++.++..++.+|+.++...- .... .++.|++.+.+ ++.+|+.++.++..++...+...
T Consensus 96 ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~-----p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~ 170 (861)
T 2bpt_A 96 IKTNALTALVSIEPRIANAAAQLIAAIADIEL-----PHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQS 170 (861)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG-----GGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTS
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHHHhhC-----cccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhh
Confidence 34678888999999999999999998874321 1112 34566666664 56899999999999986532210
Q ss_pred hhhccccCcccHHHHHHHHhcC--ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHH
Q 009514 93 SQFVGPDTGRTLSCIIEIVKDR--FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFS 169 (533)
Q Consensus 93 ~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~ 169 (533)
+ +........++.+...+.++ ++.+|..|++++..+...-.............++.|.+.+.+ +..++..++.++.
T Consensus 171 ~-~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~ 249 (861)
T 2bpt_A 171 Q-ALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLC 249 (861)
T ss_dssp S-TTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0 01111123455666777776 789999999999987542211111111123467777777764 4678888999998
Q ss_pred hhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhh--------------Hhhh--hhchHH
Q 009514 170 SLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR--------------SRCL--SLQVLK 233 (533)
Q Consensus 170 ~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~--------------~~~~--~~~~l~ 233 (533)
.++...+..-...+....++.+...+.+. ++.++..++..+..++....... ..+. -..++|
T Consensus 250 ~l~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 327 (861)
T 2bpt_A 250 KIMSKYYTFMKPYMEQALYALTIATMKSP--NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVP 327 (861)
T ss_dssp HHHHHHGGGCHHHHHHTHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHH
Confidence 88754322111111113445555555543 47889999999988875321100 0011 135788
Q ss_pred HHHHhcCC-------CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCc-
Q 009514 234 LVVDALAH-------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFT- 305 (533)
Q Consensus 234 ~l~~~L~~-------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~- 305 (533)
.++..+.+ .++.+|..+..+|..++...+. . .-..+++.+.+.+.++++.++..|+++++.++....
T Consensus 328 ~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~---~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~ 402 (861)
T 2bpt_A 328 NLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN---H--ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDK 402 (861)
T ss_dssp HHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG---G--GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCH
T ss_pred HHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH---h--HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCH
Confidence 88888874 3468999999999999876331 1 223566777778888999999999999999997653
Q ss_pred hhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh-HHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHH
Q 009514 306 TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC-KEEIFMELTASLLASLICDPEPSVQEQALALVRN 384 (533)
Q Consensus 306 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~-~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~ 384 (533)
......+ ...++.++..+.++++.+|..++|++++++....+.. .... -...++.+++.+.++ +.++..+++++.+
T Consensus 403 ~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~~~l~~l~~~l~~~-~~v~~~a~~al~~ 479 (861)
T 2bpt_A 403 VQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH-LPGVVQACLIGLQDH-PKVATNCSWTIIN 479 (861)
T ss_dssp HHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTT-HHHHHHHHHHHHTSC-HHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHH-HHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 2222223 2578889999999999999999999999876432110 0011 123467777788775 9999999999999
Q ss_pred hhcCCc----chHHHHHhhcCchHHHHHHHhcc-CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHH
Q 009514 385 LVDGRI----NSVEYIFAEDGIILDAVGRQLRI-ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK 459 (533)
Q Consensus 385 l~~~~~----~~~~~i~~~~~~~~~~L~~~L~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 459 (533)
++.... ......+. .+++.+.+.+.+ +.++.++..++.+++.++..........+. .++|.+++
T Consensus 480 l~~~~~~~~~~~l~~~~~---~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~--------~l~~~l~~ 548 (861)
T 2bpt_A 480 LVEQLAEATPSPIYNFYP---ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA--------SISTFVMD 548 (861)
T ss_dssp HHHHHSSSSSCGGGGGHH---HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH--------HHHHHHHH
T ss_pred HHHhcccccchhhHHHHH---HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH--------HHHHHHHH
Confidence 886421 11111111 166777777764 234789999999999998754433444443 45566666
Q ss_pred hhcc---------------CChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCC-cHHHHHHHHHH
Q 009514 460 FLQS---------------NDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL-DVKLRVKTALE 523 (533)
Q Consensus 460 ~L~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~-~v~~~a~~aL~ 523 (533)
.+.+ ....++..++.+|.+++..-.. ...... ..+++.+.+.+++.+. .+++.+..++.
T Consensus 549 ~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~-~~l~~~l~~~l~~~~~~~v~~~~~~~l~ 623 (861)
T 2bpt_A 549 KLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS----SVEPVA-DMLMGLFFRLLEKKDSAFIEDDVFYAIS 623 (861)
T ss_dssp HHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG----GTGGGH-HHHHHHHHHHHHSTTGGGTHHHHHHHHH
T ss_pred HHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHH-HHHHHHHHHHHccCCCCcHHHHHHHHHH
Confidence 6652 1346888999999998852111 111111 1356778888877666 88999988888
Q ss_pred HHhhh
Q 009514 524 QFNSF 528 (533)
Q Consensus 524 ~~~~~ 528 (533)
.+...
T Consensus 624 ~l~~~ 628 (861)
T 2bpt_A 624 ALAAS 628 (861)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
No 48
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.77 E-value=2.6e-16 Score=174.04 Aligned_cols=479 Identities=12% Similarity=0.089 Sum_probs=309.3
Q ss_pred cchHHHHhhhcCC--CcchhHHHHHHHHHhhcCch-h-HHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhh
Q 009514 17 ENMEFLLSLLNNE--SENVSGLGASIISHSCKTSL-E-QKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEV 91 (533)
Q Consensus 17 ~~i~~L~~lL~~~--~~~v~~~a~~~l~~~~~~~~-~-~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~ 91 (533)
..++.+...++++ +..++..|+.++..+...-. + .........++.+...+.+ +..+|..++.+|..++...+..
T Consensus 172 ~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~ 251 (876)
T 1qgr_A 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY 251 (876)
T ss_dssp HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH
Confidence 4567788888876 57899999999998764311 1 0011112256666666665 6789999999999998766543
Q ss_pred hhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCC-----------------Ccchhh--hhHhhhHHHHHH
Q 009514 92 VSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP-----------------CYLQDV--GIKTKLINNLLE 152 (533)
Q Consensus 92 ~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~-----------------~~~~~~--~~~~~~i~~L~~ 152 (533)
..... ....++.++..+++.+..++..|..++..++.... ...... ..-...+|.+++
T Consensus 252 ~~~~~---~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~ 328 (876)
T 1qgr_A 252 METYM---GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 328 (876)
T ss_dssp CHHHH---TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHH
Confidence 22111 11567777778888899999999999888875310 000000 012457888888
Q ss_pred hcCC--------CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch-hhh
Q 009514 153 LLDD--------PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE-CCR 223 (533)
Q Consensus 153 ll~~--------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~-~~~ 223 (533)
.+.+ +..++..+..++..++....+ .+. ...++.+...+.+. ++.+|+.++++++.++.... ...
T Consensus 329 ~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~ 402 (876)
T 1qgr_A 329 TLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQL 402 (876)
T ss_dssp HTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCHHHH
T ss_pred HhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHHHccCC--ChHHHHHHHHHHHHHHcCCCHHHH
Confidence 8851 234677778888877643211 011 12345555555543 58999999999999986432 211
Q ss_pred HhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccccc-chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 009514 224 SRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS-AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVV 302 (533)
Q Consensus 224 ~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~-~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~ 302 (533)
.. .-.+.+|.++..++++++.||..|+++|.+++...+... .. -.-..+++.|+..+.++ +.++..++++|.+++.
T Consensus 403 ~~-~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 403 KP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND-VYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST-TTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH-HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH
Confidence 11 124589999999999999999999999999987633210 01 12346778888888775 9999999999999985
Q ss_pred CCc---------------hhHHHHHHhCcHHHHHHhhcCC---CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHH
Q 009514 303 DFT---------------TRRSTFIRLGGVKLLVQLSKSM---DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLA 364 (533)
Q Consensus 303 ~~~---------------~~~~~~~~~~~i~~L~~ll~~~---~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~ 364 (533)
... .... .+ ...++.|...+... +..+|..++.+++.++...+.+... .+. ..++.++
T Consensus 480 ~~~~~~~~~~~~~~~~~~~l~~-~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~-~~~-~l~~~l~ 555 (876)
T 1qgr_A 480 AAYEAADVADDQEEPATYCLSS-SF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYP-AVQ-KTTLVIM 555 (876)
T ss_dssp HHHHTTSCTTSCCCCCCCSSTT-TH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHH-HHH-HHHHHHH
T ss_pred HhhhccccccccccccchhhhH-hH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHH-HHH-HHHHHHH
Confidence 321 0111 11 25677888877654 3578888999999988755443322 221 2234444
Q ss_pred hhhC-----------CCC----hhHHHHHHHHHHHhhcCCc-chHHHHHhhcCchHHHHHHHhccCC-chhHHHHHHHHH
Q 009514 365 SLIC-----------DPE----PSVQEQALALVRNLVDGRI-NSVEYIFAEDGIILDAVGRQLRIAS-KAEIEIQGMYVL 427 (533)
Q Consensus 365 ~lL~-----------~~~----~~v~~~a~~~L~~l~~~~~-~~~~~i~~~~~~~~~~L~~~L~~~~-~~~v~~~a~~~L 427 (533)
..+. +.+ ++++..+++++..++.... +... .....+++.+...+.+.. .+.++..++.++
T Consensus 556 ~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l 632 (876)
T 1qgr_A 556 ERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL---QISDVVMASLLRMFQSTAGSGGVQEDALMAV 632 (876)
T ss_dssp HHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH---TTHHHHHHHHHHHC-----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh---HHHHHHHHHHHHHHHhccCCCCccHHHHHHH
Confidence 3332 222 4577888999999987654 2222 211226777777777632 147899999999
Q ss_pred HHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhh
Q 009514 428 GNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN-DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNM 506 (533)
Q Consensus 428 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~l 506 (533)
++++..........+ ..++|.+...+.+. ++.+|..|++++..++... + +...... ..+++.|.+.
T Consensus 633 ~~l~~~~~~~~~~~~--------~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~--~--~~~~~~~-~~i~~~l~~~ 699 (876)
T 1qgr_A 633 STLVEVLGGEFLKYM--------EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRAL--Q--SNIIPFC-DEVMQLLLEN 699 (876)
T ss_dssp HHHHHHHGGGGGGGH--------HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH--G--GGGHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHH--------HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH--H--HhhhhhH-HHHHHHHHHH
Confidence 998864322233333 34678899999887 7899999999999998421 1 1122221 3467888888
Q ss_pred hcC--CCCcHHHHHHHHHHHHhh
Q 009514 507 VND--PCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 507 l~~--~~~~v~~~a~~aL~~~~~ 527 (533)
+++ .+.+++..+.++++.+..
T Consensus 700 l~~~~~~~~~~~~~~~~l~~i~~ 722 (876)
T 1qgr_A 700 LGNENVHRSVKPQILSVFGDIAL 722 (876)
T ss_dssp HTCTTSCGGGHHHHHHHHHHHHH
T ss_pred hCCccccHHhhHHHHHHHHHHHH
Confidence 876 356899999999999865
No 49
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.76 E-value=1.9e-16 Score=175.14 Aligned_cols=486 Identities=15% Similarity=0.135 Sum_probs=305.6
Q ss_pred ccchHHHHhhhc-------CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcC
Q 009514 16 EENMEFLLSLLN-------NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKN 87 (533)
Q Consensus 16 ~~~i~~L~~lL~-------~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~ 87 (533)
...++.++..|. +++..++..|+.++..++..... .+. ...++.+...+.+ ++.+|+.|+.+++.++..
T Consensus 320 ~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~ 396 (876)
T 1qgr_A 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 396 (876)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSS
T ss_pred HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcC
Confidence 345677888885 34578899999999888743221 111 1344555556655 789999999999999875
Q ss_pred Ch-hhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHH
Q 009514 88 NP-EVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASF 166 (533)
Q Consensus 88 ~~-~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~ 166 (533)
.+ +...... ...++.++..++++++.+|..|+.++.+++...+........-..+++.+++.+.+++.++..+++
T Consensus 397 ~~~~~~~~~~----~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~ 472 (876)
T 1qgr_A 397 PEPSQLKPLV----IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNVCW 472 (876)
T ss_dssp SCHHHHHHHH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 43 3211111 346788889999999999999999999998764321101122357889999999877778899999
Q ss_pred HHHhhhcCCHH---------------HHHHHHHcCcHHHHHHhhhcCC-CCchhHHHHHHHHHHhhccchhhhHhhhhhc
Q 009514 167 AFSSLIAEKED---------------MQKLAFEVNGVDKLYNHLQKGS-LHPRRFEGILLALADMCSKLECCRSRCLSLQ 230 (533)
Q Consensus 167 ~L~~l~~~~~~---------------~~~~~~~~~~l~~L~~~L~~~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~ 230 (533)
++.+++....+ .... -...++.|.+.+.... .+..++..++.+++.++......... .-..
T Consensus 473 al~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~-~~~~ 549 (876)
T 1qgr_A 473 AFSSLAEAAYEAADVADDQEEPATYCLSSS--FELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYP-AVQK 549 (876)
T ss_dssp HHHHHHHHHHHTTSCTTSCCCCCCCSSTTT--HHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHH-HHHH
T ss_pred HHHHHHHHhhhccccccccccccchhhhHh--HHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHH-HHHH
Confidence 99988743210 0000 0134677777666542 13467788888888887643221111 1124
Q ss_pred hHHHHHHhcCC-----------CC----HHHHHHHHHHHHHHhhccc-cccchhhhhcCcHHHHHHhhcCCC--HHHHHH
Q 009514 231 VLKLVVDALAH-----------DS----SDVRSAACMCLRSVSRSIK-NLSAGSFMNETIVIPLVRLLDDTS--TAVQVA 292 (533)
Q Consensus 231 ~l~~l~~~L~~-----------~~----~~v~~~a~~~L~~ls~~~~-~~~~~~~~~~~~i~~Lv~lL~~~~--~~v~~~ 292 (533)
.++.+++.+.. .+ +.++..++.++..+....+ ..-. -.-..+++.++.++++.. +.++..
T Consensus 550 l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~~v~~~ 627 (876)
T 1qgr_A 550 TTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDAL--QISDVVMASLLRMFQSTAGSGGVQED 627 (876)
T ss_dssp HHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHH--TTHHHHHHHHHHHC-----CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhh--HHHHHHHHHHHHHHHhccCCCCccHH
Confidence 55555555431 22 4578888999999876543 1111 123457788888887654 478999
Q ss_pred HHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC--
Q 009514 293 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-- 369 (533)
Q Consensus 293 a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~-- 369 (533)
++.++++++...+......+. ..++.+...+.+. ++.+|..++++++.++...++..+.. -...++.+++.+.+
T Consensus 628 a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~--~~~i~~~l~~~l~~~~ 704 (876)
T 1qgr_A 628 ALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPF--CDEVMQLLLENLGNEN 704 (876)
T ss_dssp HHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHH--HHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHhCCcc
Confidence 999999988643222112222 3667888888776 78999999999999986443323222 13456777888876
Q ss_pred CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCC---c-------hhHHHHHHHHHHHhccCCh----
Q 009514 370 PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIAS---K-------AEIEIQGMYVLGNVATGKE---- 435 (533)
Q Consensus 370 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~---~-------~~v~~~a~~~L~~l~~~~~---- 435 (533)
.+.+++..+++++++++..........+. .+++.+.+.+.... + ..++..++.++..+..+..
T Consensus 705 ~~~~~~~~~~~~l~~i~~~~g~~~~~~l~---~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~ 781 (876)
T 1qgr_A 705 VHRSVKPQILSVFGDIALAIGGEFKKYLE---VVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQE 781 (876)
T ss_dssp SCGGGHHHHHHHHHHHHHHHGGGGGGGHH---HHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS
T ss_pred ccHHhhHHHHHHHHHHHHHhchhHHHHHH---HHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 46789999999999987532222111111 15666666555421 1 2677777776665543210
Q ss_pred ------hhHHHHHHHhhHhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHh-h
Q 009514 436 ------SHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKN-M 506 (533)
Q Consensus 436 ------~~~~~~~~~~~~~~~~~~~~~lv~~L~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~-l 506 (533)
......+ ..+++.+.....++ +..+|..|+.+|+.++.. .+.. ....+.....++.|++ .
T Consensus 782 ~~~~~~~~~~~~~--------~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~--~~~~-~~~~~~~~~~i~~ll~~~ 850 (876)
T 1qgr_A 782 NVHPDVMLVQPRV--------EFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTA--FGKD-VLKLVEARPMIHELLTEG 850 (876)
T ss_dssp SCCGGGGGSGGGH--------HHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHH--HCTH-HHHHHHTSHHHHHHHHHH
T ss_pred cccchHHHHHHHH--------HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH--hCcH-HHHHHHhcHHHHHHHHHH
Confidence 1111122 23334454555666 678999999999999852 1110 2223334456778888 8
Q ss_pred hcCCCCcHHHHHHHHHHHHhhhcc
Q 009514 507 VNDPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 507 l~~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
++++++++|..|.+|++.+.+...
T Consensus 851 l~~~~~~~r~~a~~a~~~~~~~~~ 874 (876)
T 1qgr_A 851 RRSKTNKAKTLARWATKELRKLKN 874 (876)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHHT
T ss_pred hhcCCHhHHHHHHHHHHHHHHhhc
Confidence 888899999999999999987654
No 50
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.75 E-value=2.1e-15 Score=172.53 Aligned_cols=481 Identities=13% Similarity=0.110 Sum_probs=321.9
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhh--h
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVV--S 93 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~--~ 93 (533)
..++.|+..|.++++.+|..|+.+|..++..-... .....++.+...+.+ +..+|..|..+|+.++...+... .
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~---~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~ 124 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGS 124 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----C
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccccc
Confidence 56788999999999999999999999988543221 112345566666654 66889999999999875433210 0
Q ss_pred hhccccCcccHHHHHHHHh-cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhh
Q 009514 94 QFVGPDTGRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSL 171 (533)
Q Consensus 94 ~~~~~~~~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l 171 (533)
.+........++.++..++ ++++.+|..|..++..++...+..... .....++.++..+.+ +..+|..|..++..+
T Consensus 125 ~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~--~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l 202 (1230)
T 1u6g_C 125 ALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN--FHPSILTCLLPQLTSPRLAVRKRTIIALGHL 202 (1230)
T ss_dssp CTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT--THHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 0000001346788888888 588999999999999988654322211 235688888888875 457899999999999
Q ss_pred hcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhh--hhchHHHHHHhcCCCCHHHHHH
Q 009514 172 IAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCL--SLQVLKLVVDALAHDSSDVRSA 249 (533)
Q Consensus 172 ~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~--~~~~l~~l~~~L~~~~~~v~~~ 249 (533)
+...+.. . -...++.+++.|.+.. ++..+..++.+++.++...+. .+. -..++|.+++.+++.++.+|..
T Consensus 203 ~~~~~~~---~-~~~~l~~l~~~L~~~~-~~~~r~~a~~~l~~l~~~~~~---~~~~~l~~l~~~ll~~l~d~~~~vR~~ 274 (1230)
T 1u6g_C 203 VMSCGNI---V-FVDLIEHLLSELSKND-SMSTTRTYIQCIAAISRQAGH---RIGEYLEKIIPLVVKFCNVDDDELREY 274 (1230)
T ss_dssp TTTC--------CTTHHHHHHHHHHHTC-SSCSCTTHHHHHHHHHHHSSG---GGTTSCTTHHHHHHHHHSSCCTTTHHH
T ss_pred HHhcCHH---H-HHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 8655431 1 1234788888787653 345677788888888753221 222 1368999999999999999999
Q ss_pred HHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC-------------------------------------CCHHHHHH
Q 009514 250 ACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-------------------------------------TSTAVQVA 292 (533)
Q Consensus 250 a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-------------------------------------~~~~v~~~ 292 (533)
+..++..++...+..-.. .-..+++.++..+.. ..+++|..
T Consensus 275 a~~~l~~l~~~~~~~~~~--~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~ 352 (1230)
T 1u6g_C 275 CIQAFESFVRRCPKEVYP--HVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRA 352 (1230)
T ss_dssp HHHHHHHHHHCTTCCCHH--HHHHHHHHHTTCCCCC------------------------------------CTTHHHHH
T ss_pred HHHHHHHHHHHChHHHHH--hHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHH
Confidence 999999998754322111 223445555555431 12457899
Q ss_pred HHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh---------------HhHHHH--H
Q 009514 293 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED---------------KCKEEI--F 355 (533)
Q Consensus 293 a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~---------------~~~~~i--~ 355 (533)
|+.++..++...+.....++ ...++.++..+.+.++.+|..++.++..++..... .+...+ .
T Consensus 353 A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (1230)
T 1u6g_C 353 AAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQ 431 (1230)
T ss_dssp HHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHH
T ss_pred HHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHH
Confidence 99999999875443233333 46778888888888899999999998887642211 011111 1
Q ss_pred HhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCc--hhHHHHHHHHHHHhccC
Q 009514 356 MELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK--AEIEIQGMYVLGNVATG 433 (533)
Q Consensus 356 ~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~--~~v~~~a~~~L~~l~~~ 433 (533)
-...++.+.+.+.++++.++..++.+|+.++...++.....+ ..+++.+...|.+ +. ..++..++..+..+...
T Consensus 432 l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l---~~ll~~l~~~L~d-~~~~~~v~~~a~~~l~~~~~~ 507 (1230)
T 1u6g_C 432 VPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI---PVLVPGIIFSLND-KSSSSNLKIDALSCLYVILCN 507 (1230)
T ss_dssp TTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH---HHHHHHHHHHTTC-SSSCHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH---HHHHHHHHHHHcC-CCCcchHHHHHHHHHHHHHHh
Confidence 122456677779999999999999999988865443221111 1267777787876 33 48899999998888642
Q ss_pred -ChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCC-------CcHHHHHHHHHCCcHHHHHh
Q 009514 434 -KESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSP-------GSSGRLVKLHDAGIVSHVKN 505 (533)
Q Consensus 434 -~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~-------~~~~~~~~l~~~g~~~~L~~ 505 (533)
.++.....+ ..++|.++..+.+++..++..|++++..++..-.. ....... .+++.+..
T Consensus 508 ~~~~~~~~~l--------~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~-----~ll~~ll~ 574 (1230)
T 1u6g_C 508 HSPQVFHPHV--------QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIK-----DLFTCTIK 574 (1230)
T ss_dssp SCGGGGHHHH--------TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHH-----HHHHHHHH
T ss_pred CCHHHHHhHH--------HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHH-----HHHHHHHH
Confidence 222233344 46789999999999999999999999888731000 1112222 24677888
Q ss_pred hh--cCCCCcHHHHHHHHHHHHhhhcc
Q 009514 506 MV--NDPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 506 ll--~~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
.+ .++++++|..|..+++.+...+.
T Consensus 575 ~l~~~d~~~~vr~~a~~~lg~L~~~~g 601 (1230)
T 1u6g_C 575 RLKAADIDQEVKERAISCMGQIICNLG 601 (1230)
T ss_dssp HHSCSSSCHHHHHHHHHHHHHHHHHTG
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 77 56777899999999999987653
No 51
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.75 E-value=1e-15 Score=161.31 Aligned_cols=440 Identities=14% Similarity=0.139 Sum_probs=300.9
Q ss_pred chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514 18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV 96 (533)
Q Consensus 18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~ 96 (533)
+++.|.+-|+++++.++..|+.+++++.. ++ +. ...++.+.++|.+ ++.||.+|+.++.++...+|+...
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~-~~----~~-~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~--- 178 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMGS-SE----MC-RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME--- 178 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHCC-HH----HH-HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG---
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCC-HH----HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH---
Confidence 56778888889999999999999999983 22 22 3467788888876 789999999999999987776543
Q ss_pred cccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC----------------CCch
Q 009514 97 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD----------------PGRV 160 (533)
Q Consensus 97 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~----------------~~~~ 160 (533)
+.++.+..++.+.++.|+.+|+.+|..++..++. . .......+|.++++|.+ +++.
T Consensus 179 -----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~-~--~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 179 -----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD-M--LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp -----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH-H--HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred -----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH-H--HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence 3566677788999999999999999998864321 0 11223567878776642 3556
Q ss_pred hhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcC----CCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHH
Q 009514 161 GDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKG----SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVV 236 (533)
Q Consensus 161 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~----~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~ 236 (533)
+.....+|..+...++...+ ...+.|.+++... +....+...+++++..+... +..+ ..+++.+.
T Consensus 251 q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l~-----~~a~~~L~ 319 (618)
T 1w63_A 251 QVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SGLR-----VLAINILG 319 (618)
T ss_dssp HHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HHHH-----HHHHHHHH
Confidence 77888899998887765432 2344455544321 11235667788888877532 2221 24678888
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCc
Q 009514 237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG 316 (533)
Q Consensus 237 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~ 316 (533)
.++.++++.+|..|..+|..++...+. .. ....+.++..+.+++..++..|+.+|..++... + .+ .+
T Consensus 320 ~~L~~~d~~vr~~aL~~L~~i~~~~p~-----~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~-n-v~-----~i 386 (618)
T 1w63_A 320 RFLLNNDKNIRYVALTSLLKTVQTDHN-----AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGN-N-IR-----GM 386 (618)
T ss_dssp HHHTCSSTTTHHHHHHHHHHHHHHHHH-----HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS-S-TH-----HH
T ss_pred HHHhCCCCchHHHHHHHHHHHHhhCHH-----HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccc-c-HH-----HH
Confidence 999999999999999999999865332 12 346678899999999999999999999998632 2 22 24
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 009514 317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396 (533)
Q Consensus 317 i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 396 (533)
++.+..++.+.+.++|..++.+++.++..-++. .. -.++.+++++++....+...++..+..+....|+....
T Consensus 387 v~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~-~~-----~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~- 459 (618)
T 1w63_A 387 MKELLYFLDSCEPEFKADCASGIFLAAEKYAPS-KR-----WHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAY- 459 (618)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCC-HH-----HHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHH-
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCcc-HH-----HHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHH-
Confidence 577888888889999999999999998743322 11 22577788887766667666777777777655554333
Q ss_pred HhhcCchHHHHHHHhccC-CchhHHHHHHHHHHHhccCChh----hHH--HHHHHhhHhhhhhhHHHHHHhhc--cCChh
Q 009514 397 FAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKES----HKE--AVMDQLLLRAENKAQSCIIKFLQ--SNDSR 467 (533)
Q Consensus 397 ~~~~~~~~~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~----~~~--~~~~~~~~~~~~~~~~~lv~~L~--~~~~~ 467 (533)
++..+...+.++ ....+...++|+||.++..-.. ..+ .+. ...+++.+..+++ ..++.
T Consensus 460 ------~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~~~~ 526 (618)
T 1w63_A 460 ------TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVT-------EDEVLDILESVLISNMSTSV 526 (618)
T ss_dssp ------HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCC-------HHHHHHHHHHHHHSTTCCHH
T ss_pred ------HHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCC-------HHHHHHHHHHHHhccCCCHH
Confidence 344555656542 2344455799999988631000 000 000 0233455666665 46789
Q ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 468 LRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 468 v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
+|..+.+++..+.... +...+.. ...|.....+.+.+||.||...+.-+..
T Consensus 527 vr~~~lta~~Kl~~~~-~~~~~~l--------~~~L~~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 527 TRGYALTAIMKLSTRF-TCTVNRI--------KKVVSIYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHHHHHHHHTTC-SSCHHHH--------HHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC-cchHHHH--------HHHHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 9999999999998632 2222221 2234445677888999999998877654
No 52
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.74 E-value=1.7e-15 Score=153.06 Aligned_cols=373 Identities=14% Similarity=0.129 Sum_probs=271.0
Q ss_pred cccHHHHHHHHh-cCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC---CCchhhhHHHHHHhhhcCCH
Q 009514 101 GRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD---PGRVGDEASFAFSSLIAEKE 176 (533)
Q Consensus 101 ~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~~~~a~~~L~~l~~~~~ 176 (533)
..+|+.+..-+. +.-.+-|..|+..|..+++..+ ..+..+++|.|+..|++ +.++-..+.++|.++...++
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~-----~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR-----LEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT-----THHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH-----HHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 356777877555 4566889999999999987532 24567899999999973 33455567788877654332
Q ss_pred H-----------------HHHH-HHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchh-hhHhhhhh-chHHHHH
Q 009514 177 D-----------------MQKL-AFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC-CRSRCLSL-QVLKLVV 236 (533)
Q Consensus 177 ~-----------------~~~~-~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~-~~~~~~~~-~~l~~l~ 236 (533)
+ .... +.+.+.++.|+.+|... +..+|.+++..|..++...+. .++.+... ++++.|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~--df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF--DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp -------------CHHHHHHHHHHHSTHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc--cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 2 1112 23457799999988765 478999999999999987665 77777754 8999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCCchhHHHHH
Q 009514 237 DALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT----STAVQVAALGAISNIVVDFTTRRSTFI 312 (533)
Q Consensus 237 ~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~----~~~v~~~a~~aL~nl~~~~~~~~~~~~ 312 (533)
.+|++....+|-.+...|.+++++.++.++. +.-+|+.+.|+.+++.+ ...+..-|+..+.||...+..++..+.
T Consensus 173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQkl-VAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr 251 (651)
T 3grl_A 173 DLLADSREVIRNDGVLLLQALTRSNGAIQKI-VAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK 251 (651)
T ss_dssp GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhcCCHHHHHH-HHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999999999999999999999987776655 56679999999999754 448899999999999998888999999
Q ss_pred HhCcHHHHHHhhcCCCH------HHHHH---HHHHHHHhhccCC-----hHhHHHHHHhhcHHHHHhhhCCC--ChhHHH
Q 009514 313 RLGGVKLLVQLSKSMDS------TIRLN---ALRALRNLIFLAE-----DKCKEEIFMELTASLLASLICDP--EPSVQE 376 (533)
Q Consensus 313 ~~~~i~~L~~ll~~~~~------~~~~~---al~aL~~l~~~~~-----~~~~~~i~~~~~~~~l~~lL~~~--~~~v~~ 376 (533)
+.|.++.|..+++.+++ ....+ ++.++.-++.... +.++..+.+.|+++.+++++..+ ...++.
T Consensus 252 Et~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~ 331 (651)
T 3grl_A 252 EGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILT 331 (651)
T ss_dssp HTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHH
T ss_pred HcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHH
Confidence 99999999999875432 12233 4455555554322 24677889999999999999765 678999
Q ss_pred HHHHHHHHhhcCCcchHHHHHhhc-------CchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhh
Q 009514 377 QALALVRNLVDGRINSVEYIFAED-------GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRA 449 (533)
Q Consensus 377 ~a~~~L~~l~~~~~~~~~~i~~~~-------~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~ 449 (533)
.|+.+++.+..+++...+.+-... ..++..|..++.+.....+|.++++++..+..+++.....+..+++|..
T Consensus 332 ~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~ 411 (651)
T 3grl_A 332 ETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPST 411 (651)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcc
Confidence 999999999999886666655432 1255666666666456789999999999999988765555665443321
Q ss_pred hhh------hHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 450 ENK------AQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 450 ~~~------~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
-.+ .-..+...+.+.|+-----|+.++..+..
T Consensus 412 ~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~ 449 (651)
T 3grl_A 412 IDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQ 449 (651)
T ss_dssp CCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred cccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHc
Confidence 110 00123344445555222236666777764
No 53
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.73 E-value=4.3e-15 Score=156.61 Aligned_cols=442 Identities=12% Similarity=0.084 Sum_probs=289.4
Q ss_pred chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514 18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV 96 (533)
Q Consensus 18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~ 96 (533)
+....+.++.+++...+..+-..+..+++...... .-.+..+.+-|.+ ++.+|..|+.+|+++. .++..
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~----~l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~~---- 140 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVH----LLMTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEMC---- 140 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHH----HHHHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHHH----
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHH----HHHHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHHH----
Confidence 34445556666666666655556666654332211 1134566666665 6789999999999987 34443
Q ss_pred cccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCC-CchhhhHHHHHHhhhcCC
Q 009514 97 GPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDP-GRVGDEASFAFSSLIAEK 175 (533)
Q Consensus 97 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~a~~~L~~l~~~~ 175 (533)
...++.+.+++++.++.||..|+.++.+++...+. .+ .++++.+.+++.|. +.++..|..+|..+...+
T Consensus 141 ----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-----~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 141 ----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-----LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp ----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-----GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSH
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-----HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhC
Confidence 23577888999999999999999999999987653 11 36788888888864 578899999999998776
Q ss_pred HHHHHHHHHcCcHHHHHHhhhcC-------------CCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc---
Q 009514 176 EDMQKLAFEVNGVDKLYNHLQKG-------------SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL--- 239 (533)
Q Consensus 176 ~~~~~~~~~~~~l~~L~~~L~~~-------------~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L--- 239 (533)
++..... ...+|.++++|.+- ..++-.+...+.+|+.++..++.... ...+.+..++
T Consensus 211 ~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~ 283 (618)
T 1w63_A 211 PDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNT 283 (618)
T ss_dssp HHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTS
T ss_pred hHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhcc
Confidence 6532222 25678888877641 12455677888999998876554322 2334444443
Q ss_pred ---CCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCc
Q 009514 240 ---AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGG 316 (533)
Q Consensus 240 ---~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~ 316 (533)
++.+..+...+++++..+... + . +. ..+++.|..++.+++++++..|+.+|..++...+ ..+ ...
T Consensus 284 ~~~~~~~~aV~~ea~~~i~~l~~~-~----~-l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p----~~~-~~~ 351 (618)
T 1w63_A 284 ETSKNVGNAILYETVLTIMDIKSE-S----G-LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH----NAV-QRH 351 (618)
T ss_dssp CCSSTHHHHHHHHHHHHHHHSCCC-H----H-HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH----HHH-GGG
T ss_pred ccccchHHHHHHHHHHHHHhcCCC-H----H-HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH----HHH-HHH
Confidence 234568999999999887432 1 1 12 2467889999999999999999999999985322 233 245
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 009514 317 VKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396 (533)
Q Consensus 317 i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 396 (533)
.+.++..+.+++..+|..++.+|..++...+ . +. .++.+.+.+.+.+.+++..++.+++.++...+....+
T Consensus 352 ~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v-~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~- 422 (618)
T 1w63_A 352 RSTIVDCLKDLDVSIKRRAMELSFALVNGNN--I-RG-----MMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW- 422 (618)
T ss_dssp HHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--T-HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH-
T ss_pred HHHHHHHccCCChhHHHHHHHHHHHHccccc--H-HH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH-
Confidence 6788889999999999999999999986433 1 11 2456677777889999999999999999764333333
Q ss_pred HhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc--CChhHHHHHHH
Q 009514 397 FAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS--NDSRLRTAAVW 474 (533)
Q Consensus 397 ~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~--~~~~v~~~a~~ 474 (533)
+++.+.++|.. ....++..+...+..+....++.+.. +++.++.++.+ .+..+...++|
T Consensus 423 ------~v~~ll~lL~~-~~~~v~~~~~~~l~~ii~~~p~l~~~------------~v~~L~~~l~~~~~~~~~~~~~~w 483 (618)
T 1w63_A 423 ------HIDTIMRVLTT-AGSYVRDDAVPNLIQLITNSVEMHAY------------TVQRLYKAILGDYSQQPLVQVAAW 483 (618)
T ss_dssp ------HHHHHHHHHHH-TGGGSCSSHHHHHHHHHHHSCSTHHH------------HHHHHHHHHHHCCSCSHHHHHHHH
T ss_pred ------HHHHHHHHHHh-ccchhHHHHHHHHHHHHhcChhHHHH------------HHHHHHHHHhcccccHHHHHHHHH
Confidence 45566666666 44555555666666665544443333 33567777764 23445557999
Q ss_pred HHHhhcCCCCCC-cHH-HHHHHHHCCcHHHHHhhhc--CCCCcHHHHHHHHHHHHh
Q 009514 475 AVLNLTCSSSPG-SSG-RLVKLHDAGIVSHVKNMVN--DPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 475 ~L~~l~~~~~~~-~~~-~~~~l~~~g~~~~L~~ll~--~~~~~v~~~a~~aL~~~~ 526 (533)
+|+.++..-..+ ..+ .........+++.|..+++ ..++.+|..+.+|+.++.
T Consensus 484 ilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~ 539 (618)
T 1w63_A 484 CIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLS 539 (618)
T ss_dssp HHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 999998310000 000 0000000113445555554 346678888888886664
No 54
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.70 E-value=2.4e-15 Score=172.08 Aligned_cols=484 Identities=12% Similarity=0.091 Sum_probs=312.2
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhH------HHHHhcCchHHHHHhhc-C-ChHHHHHHHHHHHHHhcCC
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQ------KLLFDAGVLKRLTSLLG-G-SLIQRDASLESIATIFKNN 88 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~------~~i~~~g~i~~L~~lL~-~-~~~v~~~al~aL~~l~~~~ 88 (533)
..++.|+..|.++++.+|..|+.+|..++..-... ..-.-...+|.|...+. + ++.++..|+.+++.++...
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~ 165 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 165 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 46688888888899999999999999877432211 11122346788888887 3 5789999999999998643
Q ss_pred hhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC--CCchhhhHHH
Q 009514 89 PEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD--PGRVGDEASF 166 (533)
Q Consensus 89 ~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~~~~a~~ 166 (533)
+.. + .......++.++..+.++++.+|..|+.++..++...+.. . ....+|.+++.+.+ +..++..++.
T Consensus 166 ~~~---l-~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~----~-~~~~l~~l~~~L~~~~~~~~r~~a~~ 236 (1230)
T 1u6g_C 166 GGL---L-VNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----V-FVDLIEHLLSELSKNDSMSTTRTYIQ 236 (1230)
T ss_dssp CSS---C-TTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred HhH---H-HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH----H-HHHHHHHHHHHhccCCchhHHHHHHH
Confidence 321 1 1111345666677788899999999999999998764321 2 23578888887763 2467788888
Q ss_pred HHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchh-hhHhhhhhchHHHHHHhcC-----
Q 009514 167 AFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLEC-CRSRCLSLQVLKLVVDALA----- 240 (533)
Q Consensus 167 ~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~-~~~~~~~~~~l~~l~~~L~----- 240 (533)
++..++...+..-. -.-...++.+++.+.+. ++.+|+.++.++..++...+. .+.. -..++|.+++.+.
T Consensus 237 ~l~~l~~~~~~~~~-~~l~~l~~~ll~~l~d~--~~~vR~~a~~~l~~l~~~~~~~~~~~--l~~li~~ll~~l~~d~~~ 311 (1230)
T 1u6g_C 237 CIAAISRQAGHRIG-EYLEKIIPLVVKFCNVD--DDELREYCIQAFESFVRRCPKEVYPH--VSTIINICLKYLTYDPNY 311 (1230)
T ss_dssp HHHHHHHHSSGGGT-TSCTTHHHHHHHHHSSC--CTTTHHHHHHHHHHHHHCTTCCCHHH--HHHHHHHHTTCCCCC---
T ss_pred HHHHHHHHhHHHHH-HHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHChHHHHHh--HHHHHHHHHHHhCCCCCC
Confidence 88888753321000 00124568888877654 477899999999888764221 1111 1234444444442
Q ss_pred --------------------------------CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHH
Q 009514 241 --------------------------------HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTA 288 (533)
Q Consensus 241 --------------------------------~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~ 288 (533)
+..+.+|..|+.++..++...+..-.. .-..++|.++..+.+.+++
T Consensus 312 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~--~~~~l~~~l~~~l~d~~~~ 389 (1230)
T 1u6g_C 312 NYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPE--FYKTVSPALISRFKEREEN 389 (1230)
T ss_dssp ---------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHH--HHTTTHHHHHSTTSCSSSH
T ss_pred CCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHH--HHHHHHHHHHHHcCCCchH
Confidence 123578999999999998653321111 3356788888888888999
Q ss_pred HHHHHHHHHHHHhcCCch----------------hHHHH--HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh
Q 009514 289 VQVAALGAISNIVVDFTT----------------RRSTF--IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 350 (533)
Q Consensus 289 v~~~a~~aL~nl~~~~~~----------------~~~~~--~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~ 350 (533)
++..+..++..+...... ....+ .-...++.+.+.++++++.+|..++.+++.++.......
T Consensus 390 Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l 469 (1230)
T 1u6g_C 390 VKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGAL 469 (1230)
T ss_dssp HHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTT
T ss_pred HHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhh
Confidence 999999998877642110 00111 112355666777899999999999999999876532211
Q ss_pred HHHHHHhhcHHHHHhhhCCCCh--hHHHHHHHHHHHhhcCC-cchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHH
Q 009514 351 KEEIFMELTASLLASLICDPEP--SVQEQALALVRNLVDGR-INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVL 427 (533)
Q Consensus 351 ~~~i~~~~~~~~l~~lL~~~~~--~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L 427 (533)
.. . -...++.+.+.|.++++ .++..++..+..+.... ++.....+. .+++.+...+.+ ++..++..++.++
T Consensus 470 ~~-~-l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~---~llp~L~~~l~d-~~~~v~~~al~~l 543 (1230)
T 1u6g_C 470 TQ-H-IPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQ---ALVPPVVACVGD-PFYKITSEALLVT 543 (1230)
T ss_dssp GG-G-HHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHT---TTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred HH-H-HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHH---HHHHHHHHHHcc-cchHHHHHHHHHH
Confidence 11 1 12346778888887764 89999999999887543 222222222 277888887776 6778888888888
Q ss_pred HHhcc--CC-----hhhHHHHHHHhhHhhhhhhHHHHHHhh--ccCChhHHHHHHHHHHhhcCCCCCCc----HHHHHHH
Q 009514 428 GNVAT--GK-----ESHKEAVMDQLLLRAENKAQSCIIKFL--QSNDSRLRTAAVWAVLNLTCSSSPGS----SGRLVKL 494 (533)
Q Consensus 428 ~~l~~--~~-----~~~~~~~~~~~~~~~~~~~~~~lv~~L--~~~~~~v~~~a~~~L~~l~~~~~~~~----~~~~~~l 494 (533)
..++. +. ......++ ..++|.++..+ .+.+..+|..|+.+++.++....+.. +.-...+
T Consensus 544 ~~l~~~~~~~~~~~~~~~~~~~--------~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L 615 (1230)
T 1u6g_C 544 QQLVKVIRPLDQPSSFDATPYI--------KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIF 615 (1230)
T ss_dssp HHHHHHHCCSSSCCCCCCHHHH--------HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHH
T ss_pred HHHHHHhcCcccccccchHHHH--------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHH
Confidence 87773 11 11122333 35678888888 56778999999999999885211100 0001111
Q ss_pred H-------------------------------HCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514 495 H-------------------------------DAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 495 ~-------------------------------~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
. -..+++.|...+.+++..++..+..+|..+.....
T Consensus 616 ~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~ 682 (1230)
T 1u6g_C 616 LERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYS 682 (1230)
T ss_dssp HHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccc
Confidence 0 02245666667777788899999999998876653
No 55
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.70 E-value=2.9e-15 Score=152.89 Aligned_cols=387 Identities=14% Similarity=0.118 Sum_probs=254.8
Q ss_pred HHHhhcCChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHHHHHHHHhcC--ChhhHHHHHHHHHHhhhcCCCc----
Q 009514 63 LTSLLGGSLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLSCIIEIVKDR--FARTRLLASLCLIVIRNASPCY---- 136 (533)
Q Consensus 63 L~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~---- 136 (533)
|...+..+..+|..|-..|..+...+. .+.+..++..+.+. ++.+|..|+..|.++.......
T Consensus 7 L~~~~s~d~~~r~~Ae~~L~~~~~~~~-----------~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~ 75 (462)
T 1ibr_B 7 LEKTVSPDRLELEAAQKFLERAAVENL-----------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ 75 (462)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhhCh-----------HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHH
Confidence 333344466788888888887553210 23455566666654 6789999999999987542100
Q ss_pred ------chhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHH
Q 009514 137 ------LQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGIL 209 (533)
Q Consensus 137 ------~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~ 209 (533)
....-....+-..|++.+.+ ++.+ ..++.+++.++........ -.+.++.|++.+.+++.++..++.++
T Consensus 76 ~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~~~~~~r~~al 151 (462)
T 1ibr_B 76 YQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPNSTEHMKESTL 151 (462)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred HHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 01112234455667777774 5667 8889999988753211000 12467888888876511478899999
Q ss_pred HHHHHhhccc-hhhhHhhhhhchHHHHHHhcCCC--CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC
Q 009514 210 LALADMCSKL-ECCRSRCLSLQVLKLVVDALAHD--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS 286 (533)
Q Consensus 210 ~aL~~l~~~~-~~~~~~~~~~~~l~~l~~~L~~~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 286 (533)
.+|+.++... +..-. -.-..+++.+.+++++. ++.||..|++++.++....+..........-+++.+...+.+++
T Consensus 152 ~~l~~l~~~~~~~~~~-~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 230 (462)
T 1ibr_B 152 EAIGYICQDIDPEQLQ-DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD 230 (462)
T ss_dssp HHHHHHHHHSCGGGTG-GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHhCCchhhH-hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCC
Confidence 9999998632 11111 11135788999999988 79999999999998753211100000111124667777788899
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh----------------
Q 009514 287 TAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC---------------- 350 (533)
Q Consensus 287 ~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~---------------- 350 (533)
++++..++++|..++...+......+..+.++.++..+++.++.+|..+++++..++... ...
T Consensus 231 ~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 309 (462)
T 1ibr_B 231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE-MDLAIEASEAAEQGRPPEH 309 (462)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH-HHHHHHHCCTTCSSSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH-HHHHHhcccccccCCCccc
Confidence 999999999999998755432212221266777778888889999999999998887531 000
Q ss_pred -HHHHHH---hhcHHHHHhhhCC-------CChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhH
Q 009514 351 -KEEIFM---ELTASLLASLICD-------PEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI 419 (533)
Q Consensus 351 -~~~i~~---~~~~~~l~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v 419 (533)
...+.+ ...++.+++.+.+ +++.++..+..+|..++...++ .++. .+++.+...+.+ +++.+
T Consensus 310 ~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~---~~~~~l~~~l~~-~~~~~ 382 (462)
T 1ibr_B 310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVP---HVLPFIKEHIKN-PDWRY 382 (462)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHH---HHHHHHHHHTTC-SSHHH
T ss_pred hhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHH---HHHHHHHHHhcC-CChHH
Confidence 000111 2235666666642 3568999999999998865432 2222 156777777776 88999
Q ss_pred HHHHHHHHHHhccCCh-hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 420 EIQGMYVLGNVATGKE-SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 420 ~~~a~~~L~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
+..+++++++++.+.. +.....+ ..++|.++..|+++++.||..|+|+|++++.
T Consensus 383 r~aal~~l~~l~~~~~~~~~~~~l--------~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 383 RDAAVMAFGCILEGPEPSQLKPLV--------IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHHHHTSSSSCTTTTCTTT--------TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9999999999998653 2122222 4678999999999999999999999999994
No 56
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.69 E-value=6.2e-15 Score=139.92 Aligned_cols=257 Identities=15% Similarity=0.104 Sum_probs=198.2
Q ss_pred HcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccc
Q 009514 184 EVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN 263 (533)
Q Consensus 184 ~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~ 263 (533)
..+.++.|++.|.++ ++.+|..|+++|+.+.. .+.++.++++++++++.+|..|+++|..+......
T Consensus 21 ~~~~i~~L~~~L~~~--~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 21 KKLNDDELFRLLDDH--NSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HTSCHHHHHHHTTCS--SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHhhHHHHHHHHHcC--CHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 456789999988765 47899999999998752 24688999999999999999999999887532110
Q ss_pred ccchhhhhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009514 264 LSAGSFMNETIVIPLVR-LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 342 (533)
Q Consensus 264 ~~~~~~~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l 342 (533)
....++.|.. +++++++.++..++++|+++....+... ...++.|..+++++++.+|..++++|+++
T Consensus 88 -------~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~ 155 (280)
T 1oyz_A 88 -------EDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVI 155 (280)
T ss_dssp -------HHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred -------chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence 1123344443 4578999999999999999874332222 24578899999999999999999999987
Q ss_pred hccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHH
Q 009514 343 IFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQ 422 (533)
Q Consensus 343 ~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~ 422 (533)
.. ...++.|.+++.++++.++..++++|..+....+. +++.|...+.+ +++.++..
T Consensus 156 ~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~-----------~~~~L~~~l~d-~~~~vR~~ 211 (280)
T 1oyz_A 156 ND------------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD-----------IRDCFVEMLQD-KNEEVRIE 211 (280)
T ss_dssp ---------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH-----------HHHHHHHHTTC-SCHHHHHH
T ss_pred CC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHH-----------HHHHHHHHhcC-CCHHHHHH
Confidence 43 13688999999999999999999999998543332 66778788877 88999999
Q ss_pred HHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHH
Q 009514 423 GMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSH 502 (533)
Q Consensus 423 a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~ 502 (533)
++++|+++. + ...++.|+..+++++ +|..|+++|..+.. ..+++.
T Consensus 212 A~~aL~~~~--~----------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~---------------~~~~~~ 256 (280)
T 1oyz_A 212 AIIGLSYRK--D----------------KRVLSVLCDELKKNT--VYDDIIEAAGELGD---------------KTLLPV 256 (280)
T ss_dssp HHHHHHHTT--C----------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCC---------------GGGHHH
T ss_pred HHHHHHHhC--C----------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCc---------------hhhhHH
Confidence 999999875 2 234577888888755 89999999999873 146889
Q ss_pred HHhhhcC-CCCcHHHHHHHHHHH
Q 009514 503 VKNMVND-PCLDVKLRVKTALEQ 524 (533)
Q Consensus 503 L~~ll~~-~~~~v~~~a~~aL~~ 524 (533)
|.+++++ +++++...+..+|.+
T Consensus 257 L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 257 LDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp HHHHHTTSSCCHHHHHHHHHHTC
T ss_pred HHHHHhcCCCcHHHHHHHHHhhc
Confidence 9999854 566777777777754
No 57
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.64 E-value=3e-14 Score=145.37 Aligned_cols=394 Identities=13% Similarity=0.084 Sum_probs=259.2
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC---CCchhhhHHHHHHhhhcCCHHHH-
Q 009514 104 LSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD---PGRVGDEASFAFSSLIAEKEDMQ- 179 (533)
Q Consensus 104 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~---~~~~~~~a~~~L~~l~~~~~~~~- 179 (533)
+..++..+.+++..+|..|...|..+...+ ..+..+.|..++.+ +..+|..|+..|.++........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 345566666889999999998888754410 23566777777763 34678888888888864431000
Q ss_pred ----HHH------HHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCC--CHHHH
Q 009514 180 ----KLA------FEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHD--SSDVR 247 (533)
Q Consensus 180 ----~~~------~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~--~~~v~ 247 (533)
... .....-..++..|.+.+ +.+ ..+..+++.++..+... . .-.+.+|.+++.++++ ++.+|
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~--~~v-~~~~~~i~~ia~~~~~~-~--~w~~ll~~L~~~l~~~~~~~~~r 147 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTET--YRP-SSASQCVAGIACAEIPV-N--QWPELIPQLVANVTNPNSTEHMK 147 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCC--SSS-CSHHHHHHHHHHHHGGG-T--CCTTHHHHHHHHHHCTTCCHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCC--chh-hHHHHHHHHHHHHhccc-c--ccHHHHHHHHHHhccCCCCHHHH
Confidence 000 00111234666676653 456 77788888887643110 0 1146899999999988 99999
Q ss_pred HHHHHHHHHHhhcc-ccccchhhhhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCCchhHH-HHHHhCcHHHHHHh
Q 009514 248 SAACMCLRSVSRSI-KNLSAGSFMNETIVIPLVRLLDDT--STAVQVAALGAISNIVVDFTTRRS-TFIRLGGVKLLVQL 323 (533)
Q Consensus 248 ~~a~~~L~~ls~~~-~~~~~~~~~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~-~~~~~~~i~~L~~l 323 (533)
..++.+|..++... +..... ....+++.++..+.++ ++++|..|+++++++......... .....-.++.+...
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~--~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 225 (462)
T 1ibr_B 148 ESTLEAIGYICQDIDPEQLQD--KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA 225 (462)
T ss_dssp HHHHHHHHHHHHHSCGGGTGG--GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchhhHh--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence 99999999998653 111111 2235778888889877 799999999999998743221110 11111246666677
Q ss_pred hcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc------------
Q 009514 324 SKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN------------ 391 (533)
Q Consensus 324 l~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~------------ 391 (533)
+.++++.+|..++++|..++...+...+.. +....++.++..+.+.+++++..+++.+..++.....
T Consensus 226 ~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (462)
T 1ibr_B 226 TQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (462)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCGGGCTTT-TTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSS
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 788899999999999999876432211111 1113466677777889999999999999888753100
Q ss_pred -----hHHHHHh-hcCchHHHHHHHhcc------CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHH
Q 009514 392 -----SVEYIFA-EDGIILDAVGRQLRI------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK 459 (533)
Q Consensus 392 -----~~~~i~~-~~~~~~~~L~~~L~~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~ 459 (533)
....+++ ....+++.+.+.+.. +.++.++..++.+|..++....+ .++ ..++|.+..
T Consensus 305 ~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~--------~~~~~~l~~ 373 (462)
T 1ibr_B 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV--------PHVLPFIKE 373 (462)
T ss_dssp SCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH--------HHHHHHHHH
T ss_pred CCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH--------HHHHHHHHH
Confidence 0000110 001156666666643 13457899999999988864332 233 356688999
Q ss_pred hhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514 460 FLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 460 ~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
.++++++.+|.+|+.+++.++.... .+..... -..+++.|.+.++|+++.||..|.++|+++.+...
T Consensus 374 ~l~~~~~~~r~aal~~l~~l~~~~~---~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 374 HIKNPDWRYRDAAVMAFGCILEGPE---PSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HTTCSSHHHHHHHHHHHHHTSSSSC---TTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred HhcCCChHHHHHHHHHHHHHhcCCc---HHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999995211 0111111 14678999999999999999999999999987543
No 58
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.64 E-value=4.1e-14 Score=134.25 Aligned_cols=256 Identities=16% Similarity=0.120 Sum_probs=195.2
Q ss_pred cccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhcCCHHHH
Q 009514 101 GRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIAEKEDMQ 179 (533)
Q Consensus 101 ~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~~~~~~~ 179 (533)
...++.++..++++++.+|..|+.+|.++.. .+.++.|++++.+ ++.++..++++|..+........
T Consensus 22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~ 89 (280)
T 1oyz_A 22 KLNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED 89 (280)
T ss_dssp TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH
T ss_pred HhhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch
Confidence 4578999999999999999999999987642 3578999999985 46789999999998864332211
Q ss_pred HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhh
Q 009514 180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSR 259 (533)
Q Consensus 180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~ 259 (533)
. .++.|.+.+.+. .++.+|..++++|+.+...++.. ....++.++.+++++++.+|..++++|+++..
T Consensus 90 ~------l~~~L~~~~~~d-~~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 90 N------VFNILNNMALND-KSACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp H------HHHHHHHHHHHC-SCHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred H------HHHHHHHHHhcC-CCHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 1 223343322233 35889999999999987433211 23468999999999999999999999976532
Q ss_pred ccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHH
Q 009514 260 SIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRAL 339 (533)
Q Consensus 260 ~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL 339 (533)
.+.++.|+.++.++++.++..|+++|+++.... ...++.|..+++++++.+|..++++|
T Consensus 158 ------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 ------------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAIIGL 216 (280)
T ss_dssp -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 357899999999999999999999999985322 24578899999999999999999999
Q ss_pred HHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhH
Q 009514 340 RNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEI 419 (533)
Q Consensus 340 ~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v 419 (533)
+++.. ...++.++.++.+++ ++..++++|..+... . +++.|.+.+.+++++++
T Consensus 217 ~~~~~------------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~--~-----------~~~~L~~~l~~~~~~~~ 269 (280)
T 1oyz_A 217 SYRKD------------KRVLSVLCDELKKNT--VYDDIIEAAGELGDK--T-----------LLPVLDTMLYKFDDNEI 269 (280)
T ss_dssp HHTTC------------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG--G-----------GHHHHHHHHTTSSCCHH
T ss_pred HHhCC------------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCch--h-----------hhHHHHHHHhcCCCcHH
Confidence 99852 235788888888755 889999999988542 1 67888888877677777
Q ss_pred HHHHHHHHH
Q 009514 420 EIQGMYVLG 428 (533)
Q Consensus 420 ~~~a~~~L~ 428 (533)
...+...|.
T Consensus 270 ~~~~~~~l~ 278 (280)
T 1oyz_A 270 ITSAIDKLK 278 (280)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 777776654
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.54 E-value=3e-13 Score=122.46 Aligned_cols=190 Identities=21% Similarity=0.195 Sum_probs=157.3
Q ss_pred hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh
Q 009514 271 NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC 350 (533)
Q Consensus 271 ~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~ 350 (533)
..+.++.|+.+|+++++.++..|+.+|+.+.. .+.++.|++++.++++.+|..++++|+.+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 46778999999999999999999999998753 2678999999999999999999999999843
Q ss_pred HHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHh
Q 009514 351 KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNV 430 (533)
Q Consensus 351 ~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l 430 (533)
...++.+.+++.++++.++..++++|..+... + .++.|.+.+.+ +++.|+..++++|+++
T Consensus 80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~--~-----------~~~~L~~~l~d-~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE--R-----------AVEPLIKALKD-EDWFVRIAAAFALGEI 139 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--G-----------GHHHHHHHTTC-SSHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH--H-----------HHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence 13578899999999999999999999988542 1 67788888876 8999999999999988
Q ss_pred ccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCC
Q 009514 431 ATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP 510 (533)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~ 510 (533)
.. ...++.|..+++++++.+|..|+++|..+.. ..+++.|.++++++
T Consensus 140 ~~------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------------~~~~~~L~~~l~d~ 186 (211)
T 3ltm_A 140 GD------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------ERVRAAMEKLAETG 186 (211)
T ss_dssp CC------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------HHHHHHHHHHHHHC
T ss_pred CC------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHhCC
Confidence 42 2345788899999999999999999999973 12567899999989
Q ss_pred CCcHHHHHHHHHHHHhhhcc
Q 009514 511 CLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 511 ~~~v~~~a~~aL~~~~~~~~ 530 (533)
++.|+..|..+|.++.....
T Consensus 187 ~~~vr~~A~~aL~~~~~~~~ 206 (211)
T 3ltm_A 187 TGFARKVAVNYLETHKSFNH 206 (211)
T ss_dssp CHHHHHHHHHHHHC------
T ss_pred CHHHHHHHHHHHHhcCCCCC
Confidence 99999999999998866543
No 60
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.53 E-value=1.3e-12 Score=117.30 Aligned_cols=186 Identities=21% Similarity=0.213 Sum_probs=157.4
Q ss_pred hhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh
Q 009514 228 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR 307 (533)
Q Consensus 228 ~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~ 307 (533)
..+..+.++++|+++++.+|..|+.+|..+.. .+.++.|+++|.++++.++..|+++|+.+..
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----- 74 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD----- 74 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-----
Confidence 34678999999999999999999999976532 3568899999999999999999999998752
Q ss_pred HHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514 308 RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 387 (533)
Q Consensus 308 ~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~ 387 (533)
.+.++.|+.++.++++.+|..++++|+++.. + ..++.+.+++.++++.++..++++|.++..
T Consensus 75 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 75 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD---E---------RAVEPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---G---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 2568899999999999999999999999843 1 357889999999999999999999999853
Q ss_pred CCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChh
Q 009514 388 GRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSR 467 (533)
Q Consensus 388 ~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~ 467 (533)
. . .++.|...+.+ +++.|+..++++|+.+. . ...++.|..+++++++.
T Consensus 137 ~--~-----------~~~~L~~~l~d-~~~~vr~~A~~aL~~~~--~----------------~~~~~~L~~~l~d~~~~ 184 (201)
T 3ltj_A 137 E--R-----------AVEPLIKALKD-EDGWVRQSAADALGEIG--G----------------ERVRAAMEKLAETGTGF 184 (201)
T ss_dssp G--G-----------GHHHHHHHTTC-SSHHHHHHHHHHHHHHC--S----------------HHHHHHHHHHHHHCCHH
T ss_pred H--H-----------HHHHHHHHHcC-CCHHHHHHHHHHHHHhC--c----------------hhHHHHHHHHHhCCCHH
Confidence 2 1 67788888877 88999999999999883 2 23347788888999999
Q ss_pred HHHHHHHHHHhhc
Q 009514 468 LRTAAVWAVLNLT 480 (533)
Q Consensus 468 v~~~a~~~L~~l~ 480 (533)
+|..|..+|.++.
T Consensus 185 vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 185 ARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999886
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.53 E-value=3.3e-13 Score=121.17 Aligned_cols=189 Identities=20% Similarity=0.171 Sum_probs=158.5
Q ss_pred hhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChH
Q 009514 270 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK 349 (533)
Q Consensus 270 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~ 349 (533)
...+..+.++++|+++++.++..|+++|+.+.. .+.++.|++++.++++.+|..++++|+.+...
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~---- 75 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE---- 75 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG----
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH----
Confidence 456778899999999999999999999998753 25689999999999999999999999988431
Q ss_pred hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHH
Q 009514 350 CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGN 429 (533)
Q Consensus 350 ~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~ 429 (533)
..++.+.+++.++++.++..++++|.++... + .++.|.+.+.+ +++.|+..++++|++
T Consensus 76 --------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--~-----------~~~~L~~~l~d-~~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 76 --------RAVEPLIKALKDEDGWVRQSAAVALGQIGDE--R-----------AVEPLIKALKD-EDWFVRIAAAFALGE 133 (201)
T ss_dssp --------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG--G-----------GHHHHHHHTTC-SSHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH--H-----------HHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 3578899999999999999999999998532 1 57778788876 889999999999998
Q ss_pred hccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcC
Q 009514 430 VATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND 509 (533)
Q Consensus 430 l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~ 509 (533)
+.. ...++.|..+++++++.+|..|+++|..+.. ..+++.|.+++++
T Consensus 134 ~~~------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---------------~~~~~~L~~~l~d 180 (201)
T 3ltj_A 134 IGD------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG---------------ERVRAAMEKLAET 180 (201)
T ss_dssp HTC------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---------------HHHHHHHHHHHHH
T ss_pred hCC------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------hhHHHHHHHHHhC
Confidence 752 2345788999999999999999999999963 1257889999998
Q ss_pred CCCcHHHHHHHHHHHHhhh
Q 009514 510 PCLDVKLRVKTALEQFNSF 528 (533)
Q Consensus 510 ~~~~v~~~a~~aL~~~~~~ 528 (533)
+++.|+..|..+|.++...
T Consensus 181 ~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 181 GTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp CCHHHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHHHHHHHHHhh
Confidence 9999999999999987643
No 62
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.53 E-value=1.7e-12 Score=117.50 Aligned_cols=186 Identities=22% Similarity=0.214 Sum_probs=156.0
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514 229 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR 308 (533)
Q Consensus 229 ~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 308 (533)
.+.++.+++.|+++++.+|..|+.+|..+.. .+.++.|++++.++++.++..|+++|+++..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 4579999999999999999999999977532 3678899999999999999999999998762
Q ss_pred HHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514 309 STFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 309 ~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~ 388 (533)
.+.++.|+.+++++++.+|..++++|+.+.. ...++.|.+++.++++.++..++++|.++...
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~ 142 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGDE 142 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH
Confidence 2568899999999999999999999999843 13578899999999999999999999998532
Q ss_pred CcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhH
Q 009514 389 RINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRL 468 (533)
Q Consensus 389 ~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v 468 (533)
+ .++.|...+.+ +++.|+..++++|+.+.. ...++.|..+++++++.+
T Consensus 143 --~-----------~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~------------------~~~~~~L~~~l~d~~~~v 190 (211)
T 3ltm_A 143 --R-----------AVEPLIKALKD-EDGWVRQSAADALGEIGG------------------ERVRAAMEKLAETGTGFA 190 (211)
T ss_dssp --G-----------GHHHHHHHTTC-SSHHHHHHHHHHHHHHCS------------------HHHHHHHHHHHHHCCHHH
T ss_pred --H-----------HHHHHHHHHcC-CCHHHHHHHHHHHHHhCc------------------hhHHHHHHHHHhCCCHHH
Confidence 1 67788888876 889999999999998842 133477888899999999
Q ss_pred HHHHHHHHHhhcC
Q 009514 469 RTAAVWAVLNLTC 481 (533)
Q Consensus 469 ~~~a~~~L~~l~~ 481 (533)
|..|..+|.++..
T Consensus 191 r~~A~~aL~~~~~ 203 (211)
T 3ltm_A 191 RKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHhcCC
Confidence 9999999999986
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.52 E-value=7.2e-12 Score=131.61 Aligned_cols=442 Identities=11% Similarity=0.086 Sum_probs=285.6
Q ss_pred chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhh--cC-ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514 18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLL--GG-SLIQRDASLESIATIFKNNPEVVSQ 94 (533)
Q Consensus 18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL--~~-~~~v~~~al~aL~~l~~~~~~~~~~ 94 (533)
+++.+.+=|+++++.++-.|..+++++.. ++ +. ....+.+.+.| .+ ++-||.+|+.|+.++...+|+...
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e----~~-~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~- 184 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS-RE----MA-EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP- 184 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-HH----HH-HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC-
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC-HH----HH-HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC-
Confidence 45666677778899999999999999863 33 22 34678888888 54 789999999999999987776532
Q ss_pred hccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHH----HhcCC--------------
Q 009514 95 FVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLL----ELLDD-------------- 156 (533)
Q Consensus 95 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~----~ll~~-------------- 156 (533)
..+.++.+..++.+.++.|+.+|+.++..++..++.. ....+|.++ +++..
T Consensus 185 -----~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~------~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~ 253 (621)
T 2vgl_A 185 -----MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE------FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVP 253 (621)
T ss_dssp -----CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH------HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred -----chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH------HHHHHHHHHHHHHHHHhCCCCCccchhhcCCC
Confidence 1367888999999999999999999999998765321 113444444 33321
Q ss_pred CCchhhhHHHHHHhhhcC-CHHHHHHHHHcCcHHHHHHhhhcCCC---------CchhHHHHHHHHHHhhccchhhhHhh
Q 009514 157 PGRVGDEASFAFSSLIAE-KEDMQKLAFEVNGVDKLYNHLQKGSL---------HPRRFEGILLALADMCSKLECCRSRC 226 (533)
Q Consensus 157 ~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~~L~~~~~---------~~~~~~~a~~aL~~l~~~~~~~~~~~ 226 (533)
+++.+......+..+... +++..+.+.+ .++.+++.+.+... ...+...++.++..+.. +++...
T Consensus 254 ~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-- 328 (621)
T 2vgl_A 254 APWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-- 328 (621)
T ss_dssp SHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH--
T ss_pred CchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH--
Confidence 245677777888887753 4554443322 23344432222110 11455566777777653 222221
Q ss_pred hhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCc
Q 009514 227 LSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFT 305 (533)
Q Consensus 227 ~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~ 305 (533)
..++.+..++.+.++++|..+...|..++...+.. . +. ....+.++..|+ ++|..++..++..|..++. +
T Consensus 329 ---~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~-~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~ 399 (621)
T 2vgl_A 329 ---RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH--E-AV-KTHIETVINALKTERDVSVRQRAVDLLYAMCD--R 399 (621)
T ss_dssp ---HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--H-HH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--H
T ss_pred ---HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--H-HH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--h
Confidence 45778889999999999999999999997653211 1 12 356777888888 9999999999999999984 2
Q ss_pred hhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHh
Q 009514 306 TRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 385 (533)
Q Consensus 306 ~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l 385 (533)
.+.+ .++..|..++...+.+++..++.+++.++..-++.. .-.++.+++++......+...+...+..+
T Consensus 400 ~Nv~-----~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~------~~~v~~Ll~ll~~~~~~v~~ev~~~l~~i 468 (621)
T 2vgl_A 400 SNAQ-----QIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY------TWYVDTILNLIRIAGDYVSEEVWYRVIQI 468 (621)
T ss_dssp HHHH-----HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST------HHHHHHHHHHHHHHGGGSCSHHHHHHHHH
T ss_pred hhHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 3322 456678888888899999999999998874322211 12356777777655445556666667777
Q ss_pred hcCCcchHHHHHhhcCchHHHHHHHhccCC-chhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC
Q 009514 386 VDGRINSVEYIFAEDGIILDAVGRQLRIAS-KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN 464 (533)
Q Consensus 386 ~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~ 464 (533)
....++...+ .+..+...+.... ...+...++|++|..+..-++. ..+. | ...+..+..-+...
T Consensus 469 i~~~~~~~~~-------~~~~l~~~l~~~~~~~~li~~~~wilGEy~~~~~~~-~~~~----p---~~~l~~l~~~~~~~ 533 (621)
T 2vgl_A 469 VINRDDVQGY-------AAKTVFEALQAPACHENLVKVGGYILGEFGNLIAGD-PRSS----P---LIQFNLLHSKFHLC 533 (621)
T ss_dssp HGGGCSCHHH-------HHHHHHHHHTSSSCCHHHHHHHHHHHHHHTHHHHSS-TTSC----H---HHHHHHHHHHHTTS
T ss_pred HhCChhHHHH-------HHHHHHHHHcCccchHHHHHHHHHHhcchHHHhccc-CCCC----H---HHHHHHHHHHhccC
Confidence 6555543333 2344455565522 2356677889999876311100 0000 0 12334555555677
Q ss_pred ChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc--CCCCcHHHHHHHHHHHHh
Q 009514 465 DSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN--DPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 465 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~--~~~~~v~~~a~~aL~~~~ 526 (533)
+..+|..+..++..+... .+...+. +...|..... +.+.|||.||...+.-+.
T Consensus 534 ~~~v~~~~Lta~~Kl~~~-~p~~~~~--------i~~~l~~~~~~~~~d~evrdRA~~y~~Ll~ 588 (621)
T 2vgl_A 534 SVPTRALLLSTYIKFVNL-FPEVKAT--------IQDVLRSDSQLKNADVELQQRAVEYLRLST 588 (621)
T ss_dssp CHHHHHHHHHHHHHHHHH-CGGGHHH--------HHHHHSSHHHHSCSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH-ChHHHHH--------HHHHHHHHhcCCCCCHHHHHHHHHHHHHHc
Confidence 889999999999988741 1111111 1223333334 789999999988876664
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.52 E-value=1.5e-11 Score=129.15 Aligned_cols=436 Identities=14% Similarity=0.123 Sum_probs=283.5
Q ss_pred chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC-ChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514 18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG-SLIQRDASLESIATIFKNNPEVVSQFV 96 (533)
Q Consensus 18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~v~~~al~aL~~l~~~~~~~~~~~~ 96 (533)
+....+.++.+++...+..+-..+..+++....... -.+..+.+-|.+ ++-+|..|+.+++++. .++..+
T Consensus 75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~----L~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~--- 145 (621)
T 2vgl_A 75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIR----LINNAIKNDLASRNPTFMGLALHCIANVG--SREMAE--- 145 (621)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHH----HHHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH---
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHH----HHHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH---
Confidence 456677788888888888888888887755432211 123455555655 7789999999999985 355543
Q ss_pred cccCcccHHHHHHHH--hcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC-CCchhhhHHHHHHhhhc
Q 009514 97 GPDTGRTLSCIIEIV--KDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD-PGRVGDEASFAFSSLIA 173 (533)
Q Consensus 97 ~~~~~~~i~~l~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~a~~~L~~l~~ 173 (533)
..++.+.+++ .+.++.||..|+.|+..++...++. +...++++.+.++|+| ++.++..|..++..++.
T Consensus 146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~----~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL----VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQ 216 (621)
T ss_dssp -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG----CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh----cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHH
Confidence 3466788888 8999999999999999999976532 2124789999999986 45788888899998887
Q ss_pred CCHHHHHHHHHcCcHHHHHHhhh----cCCC-----------CchhHHHHHHHHHHhhcc-chhhhHhhhhhchHHHHHH
Q 009514 174 EKEDMQKLAFEVNGVDKLYNHLQ----KGSL-----------HPRRFEGILLALADMCSK-LECCRSRCLSLQVLKLVVD 237 (533)
Q Consensus 174 ~~~~~~~~~~~~~~l~~L~~~L~----~~~~-----------~~~~~~~a~~aL~~l~~~-~~~~~~~~~~~~~l~~l~~ 237 (533)
.++..- ...+|.+++.|. .+.. ++-.+...+..+..++.. +++.+..+.+ .++.++.
T Consensus 217 ~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~ 289 (621)
T 2vgl_A 217 KNPEEF-----KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILN 289 (621)
T ss_dssp HCHHHH-----TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHH
T ss_pred hChHHH-----HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHH
Confidence 765421 123455554333 2211 244677778888887753 3343333322 3444443
Q ss_pred hcC---------CCCH--HHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCch
Q 009514 238 ALA---------HDSS--DVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTT 306 (533)
Q Consensus 238 ~L~---------~~~~--~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~ 306 (533)
.+. +.+. .|...+++++..+... +. ....++..|..++.+++++++..++.+|..++...+.
T Consensus 290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~-~~------~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~ 362 (621)
T 2vgl_A 290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSE-PN------LLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFS 362 (621)
T ss_dssp HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC-HH------HHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT
T ss_pred hhccCcccccccccchHHHHHHHHHHHHHhcCCc-HH------HHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc
Confidence 321 2233 7888899998887522 11 1235677899999999999999999999999875432
Q ss_pred hHHHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHh
Q 009514 307 RRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNL 385 (533)
Q Consensus 307 ~~~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l 385 (533)
. ..+ ......++..++ +++..+|..++..|..++.. .+-+. .+..+.+.+.+.+.+.+..++..++.+
T Consensus 363 -~-~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 363 -H-EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp -H-HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -H-HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1 223 245677778788 89999999999999999742 22222 244566667778999999999999888
Q ss_pred hcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCC
Q 009514 386 VDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSND 465 (533)
Q Consensus 386 ~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~ 465 (533)
+...+....+ +++.|.+++.. ....+...+...+.++....++.+... +..+.+.+.++.
T Consensus 432 a~k~~~~~~~-------~v~~Ll~ll~~-~~~~v~~ev~~~l~~ii~~~~~~~~~~------------~~~l~~~l~~~~ 491 (621)
T 2vgl_A 432 AEKYAVDYTW-------YVDTILNLIRI-AGDYVSEEVWYRVIQIVINRDDVQGYA------------AKTVFEALQAPA 491 (621)
T ss_dssp HHHHCSSTHH-------HHHHHHHHHHH-HGGGSCSHHHHHHHHHHGGGCSCHHHH------------HHHHHHHHTSSS
T ss_pred HHhcCCcHHH-------HHHHHHHHHHh-hcccchHHHHHHHHHHHhCChhHHHHH------------HHHHHHHHcCcc
Confidence 7542222222 55666666665 333355555555555554444444333 346677787664
Q ss_pred --hhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHC------CcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 466 --SRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDA------GIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 466 --~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~------g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
..+...++|.|+.++. .+.+. ..+..+.+-..+.++.+|-.+.+|+.++..
T Consensus 492 ~~~~li~~~~wilGEy~~-----------~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~ 550 (621)
T 2vgl_A 492 CHENLVKVGGYILGEFGN-----------LIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVN 550 (621)
T ss_dssp CCHHHHHHHHHHHHHHTH-----------HHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcchHH-----------HhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 3566788899999973 11111 012334433345567788888787777643
No 65
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.32 E-value=7.9e-09 Score=109.93 Aligned_cols=218 Identities=16% Similarity=0.138 Sum_probs=151.0
Q ss_pred ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHH-hhcC-ChHHHHHHHHHHHHHhcC-Chhhh
Q 009514 16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTS-LLGG-SLIQRDASLESIATIFKN-NPEVV 92 (533)
Q Consensus 16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~-lL~~-~~~v~~~al~aL~~l~~~-~~~~~ 92 (533)
+..+.+++..|+|+++..|..|+.+|.+++..+..+..+.++|++.+++. +|.. +..||+.|+.+|++|+.+ .++++
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 34677888999999999999999999999998888999999999987654 5664 779999999999999854 45665
Q ss_pred hhhccccCcccHHHHHHHHhcCCh---------------------hhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHH
Q 009514 93 SQFVGPDTGRTLSCIIEIVKDRFA---------------------RTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLL 151 (533)
Q Consensus 93 ~~~~~~~~~~~i~~l~~ll~~~~~---------------------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~ 151 (533)
..+.+ .++++.+..+++.... .+...+..+|++++..+.. ..+.+...+.+|.|+
T Consensus 113 ~~l~~---~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~-~~~~v~~~~~l~~l~ 188 (684)
T 4gmo_A 113 VHLYR---LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDE-IHEAVATKQTILRLL 188 (684)
T ss_dssp HHHHH---TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHH-HHHHHHTCHHHHHHH
T ss_pred HHHHH---cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHH-HHHHHHhcccHHHHH
Confidence 55543 4677877776542110 1233466788888876542 445566789999999
Q ss_pred HhcC--C--CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcH---HHHHHhhhcCCCCchhHHHHHHHHHHhhcc-----c
Q 009514 152 ELLD--D--PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGV---DKLYNHLQKGSLHPRRFEGILLALADMCSK-----L 219 (533)
Q Consensus 152 ~ll~--~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l---~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-----~ 219 (533)
.+|. + +.+++..++.+|..++.++....+.+.+.+.. ..+.. +.... ...+..++..|.++... .
T Consensus 189 ~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~-~~~~~--~~~~~la~giL~Ni~~~~~~~d~ 265 (684)
T 4gmo_A 189 FRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLK-LATGT--DPRAVMACGVLHNVFTSLQWMDH 265 (684)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHH-HHHSS--CTTHHHHHHHHHHHHHHHTCBTT
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHH-HhcCC--cHHHHHHHHHHHhHhhhhhhhhc
Confidence 9885 2 24688899999999999999887777776643 23333 33332 23456667777776421 1
Q ss_pred hhhhHhhhhhchHHHHHHhcC
Q 009514 220 ECCRSRCLSLQVLKLVVDALA 240 (533)
Q Consensus 220 ~~~~~~~~~~~~l~~l~~~L~ 240 (533)
............++.+...+.
T Consensus 266 s~~~~~~~~~~li~~l~~~l~ 286 (684)
T 4gmo_A 266 SPGKDGACDAILIPTLTRALE 286 (684)
T ss_dssp BCCGGGCSGGGTHHHHHHHHT
T ss_pred chhhHHHHHHHHHHhhhhhHh
Confidence 111222333445666666554
No 66
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.99 E-value=2.4e-09 Score=113.88 Aligned_cols=196 Identities=15% Similarity=0.132 Sum_probs=148.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHH-HhhcCCCHHHHHHHHHHHHHhhccCChHhHH
Q 009514 274 IVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLV-QLSKSMDSTIRLNALRALRNLIFLAEDKCKE 352 (533)
Q Consensus 274 ~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~-~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~ 352 (533)
-+.++++.|++++++.|..|+++|+|++. .+..++.+...|++..++ .++.+++.++|.+|.++|.||+...+++...
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 35567788999999999999999999996 556677788889888765 5788899999999999999999877888889
Q ss_pred HHHHhhcHHHHHhhhCCCC---------------------hhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh
Q 009514 353 EIFMELTASLLASLICDPE---------------------PSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL 411 (533)
Q Consensus 353 ~i~~~~~~~~l~~lL~~~~---------------------~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L 411 (533)
.++..++++.|..+++... +++..+++.+|.+++.++.+....+...+ .++.++..|
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~--~l~~l~~~L 191 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQ--TILRLLFRL 191 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCH--HHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcc--cHHHHHHHH
Confidence 9999999999988874210 24556788999999988777777777766 566666665
Q ss_pred cc-C-CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhh---HHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514 412 RI-A-SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKA---QSCIIKFLQSNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 412 ~~-~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~lv~~L~~~~~~v~~~a~~~L~~l~ 480 (533)
.+ + ...+++..++.+|.+++..+....+.+.+ .+. +..+..+ ...+...+..+++.|.|+.
T Consensus 192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~-------~~~~~~~~~ll~~-~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITD-------DQETHVYDVLLKL-ATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHT-------CCSSCHHHHHHHH-HHSSCTTHHHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHh-------cchHHHHHHHHHH-hcCCcHHHHHHHHHHHhHh
Confidence 43 2 23579999999999999988776666654 332 2233332 3344445777888888864
No 67
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.95 E-value=1.6e-07 Score=100.02 Aligned_cols=272 Identities=13% Similarity=0.091 Sum_probs=186.7
Q ss_pred CcHHHHHHhhhcC-CCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCC--------HHHHHHHHHHHHH
Q 009514 186 NGVDKLYNHLQKG-SLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDS--------SDVRSAACMCLRS 256 (533)
Q Consensus 186 ~~l~~L~~~L~~~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~--------~~v~~~a~~~L~~ 256 (533)
+++..|-++|... +.++.++..|+.+|+-+..+.. + ..+..|.+.+.+.+ +.+|..|+..|+.
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~---~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG---R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT---H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc---H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3566777777632 2347789999999998765432 1 24677777776554 6788888888877
Q ss_pred HhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh-cCCCHHHHHHH
Q 009514 257 VSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS-KSMDSTIRLNA 335 (533)
Q Consensus 257 ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll-~~~~~~~~~~a 335 (533)
..... .+..+++.|..++.+++..++..|+.+|+.+-.+..+. .++..|++.+ ...+..+++.+
T Consensus 464 a~~GS--------~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-------~ai~~LL~~~~e~~~e~vrR~a 528 (963)
T 4ady_A 464 AAMGS--------ANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-------EAIHDMFTYSQETQHGNITRGL 528 (963)
T ss_dssp HSTTC--------CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-------HHHHHHHHHHHHCSCHHHHHHH
T ss_pred HhcCC--------CCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-------HHHHHHHHHHhccCcHHHHHHH
Confidence 64331 12356778899998888888889999998775444331 2344555543 45678899999
Q ss_pred HHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccC
Q 009514 336 LRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA 414 (533)
Q Consensus 336 l~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~ 414 (533)
..+|+-+..+.. ...+.+++.|. +.++.++..++.+++.-..+..+. . .++.|...+.++
T Consensus 529 algLGll~~g~~----------e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-~--------aIq~LL~~~~~d 589 (963)
T 4ady_A 529 AVGLALINYGRQ----------ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-S--------AVKRLLHVAVSD 589 (963)
T ss_dssp HHHHHHHTTTCG----------GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-H--------HHHHHHHHHHHC
T ss_pred HHHHHhhhCCCh----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-H--------HHHHHHHHhccC
Confidence 999998866443 23556666654 678888888887776555443211 0 455444555555
Q ss_pred CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHH-hhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHH
Q 009514 415 SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK-FLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVK 493 (533)
Q Consensus 415 ~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~-~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 493 (533)
.++.|+..|..+|+.+..+.++. ++.++. ++++.++.+|..|+++|+.+.. +.+.
T Consensus 590 ~~d~VRraAViaLGlI~~g~~e~----------------v~rlv~~L~~~~d~~VR~gAalALGli~a--Gn~~------ 645 (963)
T 4ady_A 590 SNDDVRRAAVIALGFVLLRDYTT----------------VPRIVQLLSKSHNAHVRCGTAFALGIACA--GKGL------ 645 (963)
T ss_dssp SCHHHHHHHHHHHHHHTSSSCSS----------------HHHHTTTGGGCSCHHHHHHHHHHHHHHTS--SSCC------
T ss_pred CcHHHHHHHHHHHHhhccCCHHH----------------HHHHHHHHHhcCCHHHHHHHHHHHHHhcc--CCCc------
Confidence 77889999999999988776532 244455 4467889999999999999885 1121
Q ss_pred HHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHh
Q 009514 494 LHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 494 l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~ 526 (533)
..++..|.++++|++.+|+..|..||+.+.
T Consensus 646 ---~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 646 ---QSAIDVLDPLTKDPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp ---HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred ---HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 124678888899999999999999999874
No 68
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.87 E-value=1.1e-07 Score=87.47 Aligned_cols=185 Identities=13% Similarity=0.170 Sum_probs=140.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514 233 KLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTF 311 (533)
Q Consensus 233 ~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 311 (533)
+.+.+.+++.+|..|..|+..|..+....+..... .-..+++.|..++. +++..++..|+.+++.++..........
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~--~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG--EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC--CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC--CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 34778889999999999999999997653322111 11356788888894 9999999999999999996443322222
Q ss_pred HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC-c
Q 009514 312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR-I 390 (533)
Q Consensus 312 ~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~-~ 390 (533)
. ...++.++..+.++++.+|..+..+|.+++...+. ...++.+...+++.++.++..++..|..+.... +
T Consensus 96 ~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 A-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--------EAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp H-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 2 35789999999999999999999999999764431 124677888899999999999999999976543 3
Q ss_pred ch-HHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514 391 NS-VEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 391 ~~-~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 432 (533)
+. ....+. .+++.+...|.+ ++++|+..|..+++.++.
T Consensus 167 ~~~~~~~l~---~l~p~l~~~l~D-~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 167 TALNKKLLK---LLTTSLVKTLNE-PDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGCCHHHHH---HHHHHHHHHHTS-SCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHH---HHHHHHHHHhcC-CChHHHHHHHHHHHHHHH
Confidence 21 122222 178888888887 889999999999988774
No 69
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.85 E-value=5.3e-08 Score=89.69 Aligned_cols=185 Identities=11% Similarity=0.166 Sum_probs=137.8
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC-CCCHHHHHHHHHHHHHHhhccccccchh
Q 009514 190 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA-HDSSDVRSAACMCLRSVSRSIKNLSAGS 268 (533)
Q Consensus 190 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~-~~~~~v~~~a~~~L~~ls~~~~~~~~~~ 268 (533)
.+.+.+.+. ++..|..++..|..+....+..... .-..+++.+...+. +.+..|+..|+.++..++......-.
T Consensus 19 ~l~~~l~s~--~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~-- 93 (242)
T 2qk2_A 19 DFYDKLEEK--KWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS-- 93 (242)
T ss_dssp THHHHHTCS--SHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH--
T ss_pred HHHhhhccC--CHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH--
Confidence 356656544 5899999999999887642221111 11356888888994 99999999999999999865332111
Q ss_pred hhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh
Q 009514 269 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED 348 (533)
Q Consensus 269 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~ 348 (533)
-....++|.|+..+.++++.++..|..+|.++....+. ...++.+...+++.++.+|..++..|..+....++
T Consensus 94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-------EAQQESIVESLSNKNPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence 13456889999999999999999999999999864321 23577888889999999999999999997654433
Q ss_pred Hh-HHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514 349 KC-KEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 387 (533)
Q Consensus 349 ~~-~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~ 387 (533)
+. -...+. ..++.+..++.++++++|..|..++..++.
T Consensus 167 ~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 167 TALNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp GGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 21 112222 458899999999999999999999988874
No 70
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.83 E-value=4.1e-06 Score=89.33 Aligned_cols=310 Identities=12% Similarity=0.071 Sum_probs=197.2
Q ss_pred hHHHHHHhcC----CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCC------CchhHHHHHHHHHHh
Q 009514 146 LINNLLELLD----DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSL------HPRRFEGILLALADM 215 (533)
Q Consensus 146 ~i~~L~~ll~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~------~~~~~~~a~~aL~~l 215 (533)
++..|-+.|. +++.++.-|+..|..+..+... ..+..|...|.+.+. ++.++..|+..|+-.
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 3445555553 1223455555556555444321 124556666655420 245778888888865
Q ss_pred hccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhh-cCCCHHHHHHHH
Q 009514 216 CSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLL-DDTSTAVQVAAL 294 (533)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL-~~~~~~v~~~a~ 294 (533)
..... +..+++.|.+.+.+.+..++..|+.+|+.+-... .....+..|++.+ .+.+..++..++
T Consensus 465 ~~GS~-------~eev~e~L~~~L~dd~~~~~~~AalALGli~vGT--------gn~~ai~~LL~~~~e~~~e~vrR~aa 529 (963)
T 4ady_A 465 AMGSA-------NIEVYEALKEVLYNDSATSGEAAALGMGLCMLGT--------GKPEAIHDMFTYSQETQHGNITRGLA 529 (963)
T ss_dssp STTCC-------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC--------CCHHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred hcCCC-------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc--------CCHHHHHHHHHHHhccCcHHHHHHHH
Confidence 43221 1134677788888777777778888877653221 1224456677755 466889999999
Q ss_pred HHHHHHhcCCchhHHHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhh-hCCCCh
Q 009514 295 GAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL-ICDPEP 372 (533)
Q Consensus 295 ~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l-L~~~~~ 372 (533)
.+|+.+..+.++ .++.+++.+. +.++.+|..++.+++--..+.++. ..++.|++. .++.+.
T Consensus 530 lgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~--------~aIq~LL~~~~~d~~d 592 (963)
T 4ady_A 530 VGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN--------SAVKRLLHVAVSDSND 592 (963)
T ss_dssp HHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH--------HHHHHHHHHHHHCSCH
T ss_pred HHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH--------HHHHHHHHHhccCCcH
Confidence 999988765543 4556665554 578889999988887554444321 234444443 357788
Q ss_pred hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhh
Q 009514 373 SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENK 452 (533)
Q Consensus 373 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 452 (533)
.+|..|+.+|+.+..++++. .+.+..+|.++.++.||..++++|+.+..|++. . .
T Consensus 593 ~VRraAViaLGlI~~g~~e~-----------v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~------------~ 647 (963)
T 4ady_A 593 DVRRAAVIALGFVLLRDYTT-----------VPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--Q------------S 647 (963)
T ss_dssp HHHHHHHHHHHHHTSSSCSS-----------HHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--H------------H
T ss_pred HHHHHHHHHHHhhccCCHHH-----------HHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--H------------H
Confidence 99999999999988776642 334445555558899999999999999987762 2 2
Q ss_pred hHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCC--CCcHHHHHHHHHHHH
Q 009514 453 AQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP--CLDVKLRVKTALEQF 525 (533)
Q Consensus 453 ~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~--~~~v~~~a~~aL~~~ 525 (533)
++..|..++++++..||..|+.+|+.+..-.......+...+ +..|.+...+. ++..+.-|.-|.+-+
T Consensus 648 aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~-----l~~L~~~~~dk~~d~~~~fga~iAqGll 717 (963)
T 4ady_A 648 AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADI-----NKNFLSVITNKHQEGLAKFGACVAQGIM 717 (963)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHH-----HHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHH-----HHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 335777888999999999999999999862111111133333 45566666543 445666666666544
No 71
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.82 E-value=2.9e-07 Score=80.16 Aligned_cols=186 Identities=18% Similarity=0.200 Sum_probs=146.3
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHH
Q 009514 315 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVE 394 (533)
Q Consensus 315 ~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 394 (533)
+.+..|..++++.|+.++.+++.+|..+....+...+...++. .++.+++++.+.|.++--.|+.+|..+..+.|-.-+
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 4678889999999999999999999999887655566666665 489999999999999999999999999988765444
Q ss_pred HHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHH
Q 009514 395 YIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVW 474 (533)
Q Consensus 395 ~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~ 474 (533)
.+.. +...+...+.+ +++-.+.+++-.++.+-.-+. .. .++..+..++.|.|..++..+..
T Consensus 112 ~y~K----l~~aL~dlik~-~~~il~~eaae~Lgklkv~~~--~~------------~V~~~l~sLl~Skd~~vK~agl~ 172 (265)
T 3b2a_A 112 TFLK----AAKTLVSLLES-PDDMMRIETIDVLSKLQPLED--SK------------LVRTYINELVVSPDLYTKVAGFC 172 (265)
T ss_dssp HHHH----HHHHHHHHTTS-CCHHHHHHHHHHHHHCCBSCC--CH------------HHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHH----HHHHHHHHhcC-CCchHHHHHHHHhCcCCcccc--hH------------HHHHHHHHHHhCCChhHHHHHHH
Confidence 4444 67788888885 889999999999998843332 22 23357778889999999999999
Q ss_pred HHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhh
Q 009514 475 AVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 475 ~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~ 527 (533)
++.+++... +.++.. ..++.-+-.++++.++.++++|..+|..+..
T Consensus 173 ~L~eia~~S--~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 173 LFLNMLNSS--ADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp HHHHHGGGC--SSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccc--CCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999999632 211111 2355667788888899999999999988864
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.81 E-value=2.8e-06 Score=70.87 Aligned_cols=216 Identities=15% Similarity=0.169 Sum_probs=164.5
Q ss_pred hhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCch
Q 009514 228 SLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTT 306 (533)
Q Consensus 228 ~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~ 306 (533)
+..++..++++|++.-|.|+..|...+..+++.-+.. -+..+..|+-+++ ++.-..-.+.+.+++.++...++
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el------~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDL------YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGG------HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHH------HHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 4468999999999999999999999999998764432 2345556777765 66677778888999999865543
Q ss_pred hHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514 307 RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV 386 (533)
Q Consensus 307 ~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~ 386 (533)
++ .+.+|.+..-..-.++.+|.+...+|..+... .|..-..+ ..-+..++.++|..-+..++..+..+.
T Consensus 104 ----~v-~~vVp~lfanyrigd~kikIn~~yaLeeIara-nP~l~~~v-----~rdi~smltskd~~Dkl~aLnFi~alG 172 (253)
T 2db0_A 104 ----LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKA-NPMLMASI-----VRDFMSMLSSKNREDKLTALNFIEAMG 172 (253)
T ss_dssp ----HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHH-CHHHHHHH-----HHHHHHHTSCSSHHHHHHHHHHHHTCC
T ss_pred ----HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHh-ChHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 22 36778888777778999999999999999874 34433333 345667888999888888888888887
Q ss_pred cCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh
Q 009514 387 DGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS 466 (533)
Q Consensus 387 ~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~ 466 (533)
.+. ..++.. .++.|..+|.+ .+.-|+.++.-+|.+++.-++..|..+. .-++-+.++..
T Consensus 173 en~---~~yv~P----fLprL~aLL~D-~deiVRaSaVEtL~~lA~~npklRkii~-------------~kl~e~~D~S~ 231 (253)
T 2db0_A 173 ENS---FKYVNP----FLPRIINLLHD-GDEIVRASAVEALVHLATLNDKLRKVVI-------------KRLEELNDTSS 231 (253)
T ss_dssp TTT---HHHHGG----GHHHHHGGGGC-SSHHHHHHHHHHHHHHHTSCHHHHHHHH-------------HHHHHCCCSCH
T ss_pred ccC---ccccCc----chHHHHHHHcC-cchhhhHHHHHHHHHHHHcCHHHHHHHH-------------HHHHHhcCcHH
Confidence 764 334443 67888777777 8888999999999999998887555443 23455678888
Q ss_pred hHHHHHHHHHHhhcC
Q 009514 467 RLRTAAVWAVLNLTC 481 (533)
Q Consensus 467 ~v~~~a~~~L~~l~~ 481 (533)
.+++....+|+.++.
T Consensus 232 lv~~~V~egL~rl~l 246 (253)
T 2db0_A 232 LVNKTVKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999998885
No 73
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.80 E-value=5.6e-05 Score=83.92 Aligned_cols=474 Identities=11% Similarity=0.027 Sum_probs=250.7
Q ss_pred HHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCch---HHHHHhhcC-ChHHHHHHHHHHHHHhcCCh------
Q 009514 20 EFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVL---KRLTSLLGG-SLIQRDASLESIATIFKNNP------ 89 (533)
Q Consensus 20 ~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i---~~L~~lL~~-~~~v~~~al~aL~~l~~~~~------ 89 (533)
..|+..+.+++..++..++.+|+.++... .. ..|. +.|++.+.+ +...+..++.+|..+++...
T Consensus 88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d-----~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~ 161 (960)
T 1wa5_C 88 KEIVPLMISLPNNLQVQIGEAISSIADSD-----FP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSD 161 (960)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHH-----ST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhh-----Cc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence 56677776667888888999998887421 11 3454 555555554 55778899999999986431
Q ss_pred hhhhhhccccCcccHHHHHHH-------HhcCCh---------hhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHh
Q 009514 90 EVVSQFVGPDTGRTLSCIIEI-------VKDRFA---------RTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLEL 153 (533)
Q Consensus 90 ~~~~~~~~~~~~~~i~~l~~l-------l~~~~~---------~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~l 153 (533)
+....+... -....+.++.+ +++... .+...++++++.+....-..... ..-...++.+.++
T Consensus 162 ~~~~~l~~~-l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 239 (960)
T 1wa5_C 162 ELFLEIKLV-LDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFE-DNIQVGMGIFHKY 239 (960)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHH-HTHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHH-HHHHHHHHHHHHH
Confidence 111111000 01223333332 333222 12233556665544322111110 0113455666666
Q ss_pred cCCC----------C------chhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhc---CCCCchhHHHHHHHHHH
Q 009514 154 LDDP----------G------RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQK---GSLHPRRFEGILLALAD 214 (533)
Q Consensus 154 l~~~----------~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~---~~~~~~~~~~a~~aL~~ 214 (533)
+... . .++..++.++..+....+..-.... ...++...+.+.+ ...+..++..++..+..
T Consensus 240 l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~ 318 (960)
T 1wa5_C 240 LSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTA 318 (960)
T ss_dssp HSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred HcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence 6421 0 1345667777777654443211111 1223444454532 12345677888888888
Q ss_pred hhccchhhhHhhhhhchHHHHH-----HhcC-----------------------CCCHHHHHHHHHHHHHHhhccccccc
Q 009514 215 MCSKLECCRSRCLSLQVLKLVV-----DALA-----------------------HDSSDVRSAACMCLRSVSRSIKNLSA 266 (533)
Q Consensus 215 l~~~~~~~~~~~~~~~~l~~l~-----~~L~-----------------------~~~~~v~~~a~~~L~~ls~~~~~~~~ 266 (533)
++.. +..+..+...+.++.++ ..+. +.....|.+|..+|..++...+.
T Consensus 319 ~~~~-~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~--- 394 (960)
T 1wa5_C 319 VTRI-PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEV--- 394 (960)
T ss_dssp HHTS-HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHH---
T ss_pred HhCc-HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcch---
Confidence 7643 23232222123333333 3331 11235788899999988876321
Q ss_pred hhhhhcCcHHHHHHhhc------CCCHHHHHHHHHHHHHHhcCCc--h----------hHHHHHHhCcHHHHHHhhcCC-
Q 009514 267 GSFMNETIVIPLVRLLD------DTSTAVQVAALGAISNIVVDFT--T----------RRSTFIRLGGVKLLVQLSKSM- 327 (533)
Q Consensus 267 ~~~~~~~~i~~Lv~lL~------~~~~~v~~~a~~aL~nl~~~~~--~----------~~~~~~~~~~i~~L~~ll~~~- 327 (533)
. .-..+++.+.+.+. ++++..++.|..+++.++.+.. . ....++. ..++..+.++
T Consensus 395 ~--v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~ 468 (960)
T 1wa5_C 395 L--VTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNN 468 (960)
T ss_dssp H--HHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSS
T ss_pred h--HHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhcCCC
Confidence 1 11223344444454 5688999999999999985321 0 1111111 1223334555
Q ss_pred --CHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCc-------c-hHHHHH
Q 009514 328 --DSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRI-------N-SVEYIF 397 (533)
Q Consensus 328 --~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~-------~-~~~~i~ 397 (533)
++.+|..++|+++.++..-.++ . -...++.+++.|.+++..|+..|+++|.+++.... . ....+.
T Consensus 469 ~~~p~vr~~a~~~lg~~~~~~~~~----~-l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~ 543 (960)
T 1wa5_C 469 IPHIILRVDAIKYIYTFRNQLTKA----Q-LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDIS 543 (960)
T ss_dssp CSCHHHHHHHHHHHHHTGGGSCHH----H-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTT
T ss_pred CCCceehHHHHHHHHHHHhhCCHH----H-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhh
Confidence 8899999999999998754322 1 22346778888888899999999999999986421 1 011122
Q ss_pred hhcCchHHHHHHHhccCC----chhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhh----cc-CChhH
Q 009514 398 AEDGIILDAVGRQLRIAS----KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFL----QS-NDSRL 468 (533)
Q Consensus 398 ~~~~~~~~~L~~~L~~~~----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L----~~-~~~~v 468 (533)
..-..+++.|..++.... +....+.++.+|+.++....+....++. .+++.+...+ ++ .+...
T Consensus 544 p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--------~l~~~L~~~l~~~~~~~~~~~~ 615 (960)
T 1wa5_C 544 NSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--------QLLAQFIEIVTIMAKNPSNPRF 615 (960)
T ss_dssp TTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--------HHHHHHHHHHHHHTTSCCCHHH
T ss_pred hhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--------HHHHHHHHHHHHHHhCCCCcHH
Confidence 211226666666666521 1113345555555544311111112221 2334444444 33 35567
Q ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514 469 RTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 469 ~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~ 529 (533)
+..+..+|+.++.. ..++....+ +..++|.+...++....+..+.+...+..+.+..
T Consensus 616 ~~~~~e~l~~l~~~---~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 616 THYTFESIGAILNY---TQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHHHHHHHHHHT---SCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc---CCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhc
Confidence 77788888887752 122222332 3446788888887666677777777777776553
No 74
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.79 E-value=1.6e-06 Score=72.20 Aligned_cols=216 Identities=19% Similarity=0.165 Sum_probs=159.0
Q ss_pred hhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCCh
Q 009514 270 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAED 348 (533)
Q Consensus 270 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~ 348 (533)
++..++..++.+|.++-+-|+..|...+.+++...++....+ +..|+.+++ +..-..-+....+++.++.-. |
T Consensus 29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~-P 102 (253)
T 2db0_A 29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK-P 102 (253)
T ss_dssp HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC-H
T ss_pred hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhC-H
Confidence 566788899999999999999999999999998877765433 455666654 555666666777888886533 2
Q ss_pred HhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHH
Q 009514 349 KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG 428 (533)
Q Consensus 349 ~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~ 428 (533)
.+++ +.++.+..=..-.+++++.+...+|..++..+|.....++. -+..++++ ++..-+..++..++
T Consensus 103 ----e~v~-~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~r-------di~smlts-kd~~Dkl~aLnFi~ 169 (253)
T 2db0_A 103 ----ELVK-SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR-------DFMSMLSS-KNREDKLTALNFIE 169 (253)
T ss_dssp ----HHHH-HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH-------HHHHHTSC-SSHHHHHHHHHHHH
T ss_pred ----HHHH-hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHH-------HHHHHhcC-CChHHHHHHHHHHH
Confidence 2222 23566666667779999999999999999888865554443 34456665 88888888888888
Q ss_pred HhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc
Q 009514 429 NVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN 508 (533)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~ 508 (533)
.+.... ...+ .-++|.|..+|.+.|.-||..|+.+|.+++.. . +..+.+ +..-++-++
T Consensus 170 alGen~---~~yv---------~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~----n-pklRki-----i~~kl~e~~ 227 (253)
T 2db0_A 170 AMGENS---FKYV---------NPFLPRIINLLHDGDEIVRASAVEALVHLATL----N-DKLRKV-----VIKRLEELN 227 (253)
T ss_dssp TCCTTT---HHHH---------GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTS----C-HHHHHH-----HHHHHHHCC
T ss_pred HHhccC---cccc---------CcchHHHHHHHcCcchhhhHHHHHHHHHHHHc----C-HHHHHH-----HHHHHHHhc
Confidence 877543 2322 35779999999999999999999999999951 2 223332 223334457
Q ss_pred CCCCcHHHHHHHHHHHHh
Q 009514 509 DPCLDVKLRVKTALEQFN 526 (533)
Q Consensus 509 ~~~~~v~~~a~~aL~~~~ 526 (533)
|++..|++.+.++|.++.
T Consensus 228 D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 228 DTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp CSCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH
Confidence 889999999999999874
No 75
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.71 E-value=1.3e-06 Score=83.77 Aligned_cols=251 Identities=12% Similarity=0.079 Sum_probs=158.8
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHH
Q 009514 230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRS 309 (533)
Q Consensus 230 ~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 309 (533)
.+...+++++.+++..+|.-..-.+.+++...+. . + =++..|.+=+.++++-++..|..+++++... +..+
T Consensus 68 ~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e---~-i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~ 138 (355)
T 3tjz_B 68 EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED---V-I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQ 138 (355)
T ss_dssp HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC---G-G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH---H-H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHH
Confidence 4567788899999999999888888888765211 1 1 2456788888899999999999999999853 2221
Q ss_pred HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514 310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 389 (533)
Q Consensus 310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~ 389 (533)
...+.+.+.+.+.++.+|.+|+.+..++... .|+ +++ +.++.+.+++.+.++-|+..|+.+|..+...+
T Consensus 139 -----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~-~pe----~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 -----AIERYMKQAIVDKVPSVSSSALVSSLHLLKC-SFD----VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp -----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTT-CHH----HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhcc-CHH----HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 3456677888999999999999999999763 343 222 46888899999999999999999999998764
Q ss_pred cchHHHHHhhcCchHHHHHHHhccC--CchhHHHHHHHHHHHhccCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhccCCh
Q 009514 390 INSVEYIFAEDGIILDAVGRQLRIA--SKAEIEIQGMYVLGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSNDS 466 (533)
Q Consensus 390 ~~~~~~i~~~~~~~~~~L~~~L~~~--~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~ 466 (533)
.. .+..++..+... .++-.+...+..+..+..++ +... ..+++.+...|++.++
T Consensus 208 ~~-----------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~------------~~~~~~l~~~L~~~~~ 264 (355)
T 3tjz_B 208 RL-----------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD------------SPLFDFIESCLRNKHE 264 (355)
T ss_dssp HH-----------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------------------CCCCCSSH
T ss_pred hH-----------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH------------HHHHHHHHHHHcCCCh
Confidence 32 223333333321 13444455555555555443 2222 2345677888899999
Q ss_pred hHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcccC
Q 009514 467 RLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDDSL 532 (533)
Q Consensus 467 ~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~~~ 532 (533)
.|..+|+.+|..+... .. . .+ ..++..|..++.++++.+|..|...|..+...-+++
T Consensus 265 aVvyEa~k~I~~l~~~---~~--~--~~--~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~ 321 (355)
T 3tjz_B 265 MVVYEAASAIVNLPGC---SA--K--EL--APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA 321 (355)
T ss_dssp HHHHHHHHHHTC--------------------CCCTHHHHHHSSSSSSHHHHHHCC----------
T ss_pred HHHHHHHHHHHhccCC---CH--H--HH--HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH
Confidence 9999999999988731 11 1 11 234567888888888898887776666665544443
No 76
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.71 E-value=5.2e-06 Score=92.50 Aligned_cols=472 Identities=13% Similarity=0.095 Sum_probs=248.3
Q ss_pred ccchHHHHhhhc-CCCcchhHHHHHHHHHhhcC-----chhHHHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcCCh
Q 009514 16 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNP 89 (533)
Q Consensus 16 ~~~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~-----~~~~~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~~~ 89 (533)
+++++.+..+|. +.+..+|..|+.+|.+.... ++....-.+...++.+...-.++..+|.+...+++.++...-
T Consensus 38 p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~~ 117 (971)
T 2x1g_F 38 PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHML 117 (971)
T ss_dssp THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHcc
Confidence 567788888886 45678899999999986532 222333334444555554433366889999999999875421
Q ss_pred hhhhhhccccCcccHHHHHHHHhcC------ChhhHHHHHHHHHHhhhc----CCCcchh---hhhH---hhhHHHHHHh
Q 009514 90 EVVSQFVGPDTGRTLSCIIEIVKDR------FARTRLLASLCLIVIRNA----SPCYLQD---VGIK---TKLINNLLEL 153 (533)
Q Consensus 90 ~~~~~~~~~~~~~~i~~l~~ll~~~------~~~v~~~a~~~L~~l~~~----~~~~~~~---~~~~---~~~i~~L~~l 153 (533)
..+ .+.++.++..++++ ++..+..+..+|..+... .....+. ..+. ..+++.+.++
T Consensus 118 p~W--------p~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~~~~~vl~ll~~~ 189 (971)
T 2x1g_F 118 GEW--------PGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAKRVQLVIHTVERY 189 (971)
T ss_dssp CC--------------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred ccc--------cHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 45678888888775 556777888888876642 1100010 0111 1233333344
Q ss_pred cC--CCC-------chhhhHHHHHHhhhc--CCHHHHHHHHHcCcHHHHHHhhh--------------cCCCCchhHHHH
Q 009514 154 LD--DPG-------RVGDEASFAFSSLIA--EKEDMQKLAFEVNGVDKLYNHLQ--------------KGSLHPRRFEGI 208 (533)
Q Consensus 154 l~--~~~-------~~~~~a~~~L~~l~~--~~~~~~~~~~~~~~l~~L~~~L~--------------~~~~~~~~~~~a 208 (533)
+. +.+ .+...+..++..... .-+.. .....++.+.. |. +...+++.++.|
T Consensus 190 l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~----~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a 264 (971)
T 2x1g_F 190 LKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE----GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESC 264 (971)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG----GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHH
T ss_pred HhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc----ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHH
Confidence 43 122 355566666654332 11110 11223444544 31 001236788999
Q ss_pred HHHHHHhhccchh-hhHhhhhhchHHHHHH-------hcCCCC---HHHHHHHHHHHHHHhhccccccc---------hh
Q 009514 209 LLALADMCSKLEC-CRSRCLSLQVLKLVVD-------ALAHDS---SDVRSAACMCLRSVSRSIKNLSA---------GS 268 (533)
Q Consensus 209 ~~aL~~l~~~~~~-~~~~~~~~~~l~~l~~-------~L~~~~---~~v~~~a~~~L~~ls~~~~~~~~---------~~ 268 (533)
+.++..+....+. .+...+ ...+|.++. .+.+++ .......++.+..++......-. ..
T Consensus 265 ~~~l~~i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (971)
T 2x1g_F 265 LKTMVNIIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELS 343 (971)
T ss_dssp HHHHHHHHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 9999988864221 011111 122333332 224444 36777778887777643111100 00
Q ss_pred hhhcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHHhcCC---------chhH---HHHHHhCcHHHHHHhhcCCC---
Q 009514 269 FMNETIVIPLVRLLDD-----TSTAVQVAALGAISNIVVDF---------TTRR---STFIRLGGVKLLVQLSKSMD--- 328 (533)
Q Consensus 269 ~~~~~~i~~Lv~lL~~-----~~~~v~~~a~~aL~nl~~~~---------~~~~---~~~~~~~~i~~L~~ll~~~~--- 328 (533)
-.-..+++.|+.+..+ .+.++...+++....++... .... ...+ ...++.++..+..++
T Consensus 344 ~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~l~~~~~~p~~~~ 422 (971)
T 2x1g_F 344 ILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLY-AHLTRILVRKSEQPDEKS 422 (971)
T ss_dssp HHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHH-HHHHHHHHHHTSCCCTTT
T ss_pred HHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH-HHHHHHHHHHhcCCCccc
Confidence 0011344555555433 47788999998887776411 1111 1111 245555555443221
Q ss_pred ------------HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC-----CChhHHHHHHHHHHHhhcCCcc
Q 009514 329 ------------STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD-----PEPSVQEQALALVRNLVDGRIN 391 (533)
Q Consensus 329 ------------~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~ 391 (533)
...|..+..+|..++...+...-..+ ++.+...+.+ .++..++.++.+++.++.+..+
T Consensus 423 ~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~ 497 (971)
T 2x1g_F 423 LAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGG 497 (971)
T ss_dssp TSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC---
T ss_pred ccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcCh
Confidence 13566666677666543321111111 2233333332 6888999999999999877543
Q ss_pred hHHHHHhhcCchHHHHHHHhcc-CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHH
Q 009514 392 SVEYIFAEDGIILDAVGRQLRI-ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRT 470 (533)
Q Consensus 392 ~~~~i~~~~~~~~~~L~~~L~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~ 470 (533)
.....+. .+++.+.. +.. ++++.|+..++|+++.++.--..+. ..+ ..+++.++..| + +.++.
T Consensus 498 ~~~~~l~---~l~~~l~~-l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l--------~~vl~~l~~~l-~--~~v~~ 561 (971)
T 2x1g_F 498 EEKRQIP---RLMRVLAE-IPYEKLNVKLLGTALETMGSYCNWLMENP-AYI--------PPAINLLVRGL-N--SSMSA 561 (971)
T ss_dssp ---CHHH---HHHHHHHH-SCTTTSCHHHHHHHHHHHHHTHHHHC-----CH--------HHHHHHHHHHH-H--SSCHH
T ss_pred hhhHHHH---HHHHHHHh-cCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH--------HHHHHHHHHHh-C--hHHHH
Confidence 2211111 13443322 231 2478899999999999885211111 222 34567777777 3 78999
Q ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCC--CCcHHHHHHHHHHHHhhh
Q 009514 471 AAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDP--CLDVKLRVKTALEQFNSF 528 (533)
Q Consensus 471 ~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~--~~~v~~~a~~aL~~~~~~ 528 (533)
.|++++.+++. .......... ..++..|.+++..+ +.+.+..+.+++..+...
T Consensus 562 ~A~~al~~l~~----~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 562 QATLGLKELCR----DCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHHHHH----HCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----HHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 99999999994 1222222221 23456666777653 346777888888888654
No 77
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.67 E-value=2.2e-06 Score=74.74 Aligned_cols=224 Identities=13% Similarity=0.171 Sum_probs=159.0
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhH
Q 009514 272 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCK 351 (533)
Q Consensus 272 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~ 351 (533)
.+.+..|..+|.+.|+.++..+..+|..+....+.......-...++.++.+++++|+.+...|+++|+.+..+.+....
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 34677899999999999999999999999875433333333357899999999999999999999999999886643221
Q ss_pred HHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhc
Q 009514 352 EEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVA 431 (533)
Q Consensus 352 ~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~ 431 (533)
... .....+..++.+++.-+++.+...+..+--..+. . .+++.+.+++. |.+.+++..|+.++.+++
T Consensus 112 -~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~--~-------~V~~~l~sLl~-Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 112 -TFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS--K-------LVRTYINELVV-SPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp -HHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC--H-------HHHHHHHHHHT-CSSHHHHHHHHHHHHHHG
T ss_pred -HHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccch--H-------HHHHHHHHHHh-CCChhHHHHHHHHHHHhh
Confidence 111 1246778888899999999999999988433221 1 16778888884 499999999999999999
Q ss_pred cCCh--hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhh-c
Q 009514 432 TGKE--SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMV-N 508 (533)
Q Consensus 432 ~~~~--~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll-~ 508 (533)
..+. ... .+++.-+-.+|++.|+.+++-|..++-.+....-.+ +-...+. ++....-.+. .
T Consensus 179 ~~S~D~~i~------------~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~--~~~~~~~--~~~~~v~~l~~~ 242 (265)
T 3b2a_A 179 NSSADSGHL------------TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE--NVKIELL--KISRIVDGLVYR 242 (265)
T ss_dssp GGCSSCCCG------------GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS--CCHHHHH--HHHHHHHHGGGC
T ss_pred cccCCHHHH------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH--hHHHHHH--HHHHHHHHHHHh
Confidence 8443 222 344556788999999999999999999998532111 1111111 1122222333 3
Q ss_pred CCCCcHHHHHHHHHHH
Q 009514 509 DPCLDVKLRVKTALEQ 524 (533)
Q Consensus 509 ~~~~~v~~~a~~aL~~ 524 (533)
.+.|.++.+|...-..
T Consensus 243 ~~~~~~~~ka~~v~~~ 258 (265)
T 3b2a_A 243 EGAPIIRLKAKKVSDL 258 (265)
T ss_dssp SSCHHHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHHH
Confidence 5577788887654433
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.66 E-value=6.2e-07 Score=82.51 Aligned_cols=194 Identities=10% Similarity=0.034 Sum_probs=138.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHHH-Hhhccccccchhhhh-cCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCCc-hhHH-
Q 009514 235 VVDALAHDSSDVRSAACMCLRS-VSRSIKNLSAGSFMN-ETIVIPLVRLL-DDTSTAVQVAALGAISNIVVDFT-TRRS- 309 (533)
Q Consensus 235 l~~~L~~~~~~v~~~a~~~L~~-ls~~~~~~~~~~~~~-~~~i~~Lv~lL-~~~~~~v~~~a~~aL~nl~~~~~-~~~~- 309 (533)
+.+.+++.+|.-|..|...|.. +....+..... -.+ ..++..|.+.+ ++.+..++..|+.+|+.++.+.. ....
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~-~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKST-SQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCT-TCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccC-cccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 4566789999999999999999 87543332210 011 24577788888 79999999999999999986443 2211
Q ss_pred HHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCC
Q 009514 310 TFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGR 389 (533)
Q Consensus 310 ~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~ 389 (533)
... .-.++.++..+++..+.++..+..++..++...++... .-.-...++.+...++++++.+++.++.+|..++...
T Consensus 100 ~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~-~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLAS-SGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCT-TCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcccccc-CCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 122 24689999999999999999999999888775532100 0000124677888899999999999999999998665
Q ss_pred cchHHHHHhhc-CchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514 390 INSVEYIFAED-GIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 390 ~~~~~~i~~~~-~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 432 (533)
+.....+...- ..+++.+.+.+.+ ++++|+..|..+++.++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D-~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVND-TQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHH
Confidence 42112222222 2388999999987 899999999999988763
No 79
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.64 E-value=6.7e-09 Score=85.68 Aligned_cols=120 Identities=14% Similarity=0.159 Sum_probs=91.0
Q ss_pred hcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhh
Q 009514 358 LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESH 437 (533)
Q Consensus 358 ~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~ 437 (533)
...+.+..+|+++++.++..++++|.++... .++.|.+.|.+ +++.|+..++++|+++.. +
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~--------------~~~~L~~~L~d-~~~~vR~~A~~aL~~~~~--~-- 72 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGDE--------------AFEPLLESLSN-EDWRIRGAAAWIIGNFQD--E-- 72 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSST--------------THHHHHHGGGC-SCHHHHHHHHHHHGGGCS--H--
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCch--------------HHHHHHHHHcC-CCHHHHHHHHHHHHhcCC--H--
Confidence 3567888999999999999999888766432 24677788886 899999999999998752 1
Q ss_pred HHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHH
Q 009514 438 KEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLR 517 (533)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~ 517 (533)
..++.|+..|+++++.||..|+++|.++.. ..+++.|.++++++++.|+..
T Consensus 73 --------------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~---------------~~a~~~L~~~l~d~~~~vr~~ 123 (131)
T 1te4_A 73 --------------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG---------------ERVRAAMEKLAETGTGFARKV 123 (131)
T ss_dssp --------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS---------------HHHHHHHHHHTTSCCTHHHHH
T ss_pred --------------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------------HHHHHHHHHHHhCCCHHHHHH
Confidence 234788888999999999999999999873 124788999999999999999
Q ss_pred HHHHHHHH
Q 009514 518 VKTALEQF 525 (533)
Q Consensus 518 a~~aL~~~ 525 (533)
|.+||.+|
T Consensus 124 A~~aL~~i 131 (131)
T 1te4_A 124 AVNYLETH 131 (131)
T ss_dssp HHHHGGGC
T ss_pred HHHHHHhC
Confidence 99998764
No 80
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.60 E-value=7.8e-07 Score=81.85 Aligned_cols=191 Identities=12% Similarity=0.116 Sum_probs=134.5
Q ss_pred HHhhhcCCCCchhHHHHHHHHHH-hhccchhhhHhhhh-hchHHHHHHhc-CCCCHHHHHHHHHHHHHHhhccc-cccc-
Q 009514 192 YNHLQKGSLHPRRFEGILLALAD-MCSKLECCRSRCLS-LQVLKLVVDAL-AHDSSDVRSAACMCLRSVSRSIK-NLSA- 266 (533)
Q Consensus 192 ~~~L~~~~~~~~~~~~a~~aL~~-l~~~~~~~~~~~~~-~~~l~~l~~~L-~~~~~~v~~~a~~~L~~ls~~~~-~~~~- 266 (533)
.+.+.+. +|.-|..++..|.. +....+.......+ ...+..+.+.+ ++.+..++..|+.+|..++.... ..-.
T Consensus 22 ~~~l~s~--~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 22 QERITSS--KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHTCS--SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHhhcC--CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 3445444 58889999999999 86432222100111 24677888888 79999999999999999996543 1111
Q ss_pred hhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccC
Q 009514 267 GSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLA 346 (533)
Q Consensus 267 ~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~ 346 (533)
. +...++|.++..+.+..+.|+.++..++-.++....+......-...++.|...+++.++.+|..++.+|..++...
T Consensus 100 ~--y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 D--YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp H--HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 1 23457899999999999999999999998887643211100000136778888899999999999999999988654
Q ss_pred Ch--HhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514 347 ED--KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV 386 (533)
Q Consensus 347 ~~--~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~ 386 (533)
.. ..-...+....++.+.+++.+++.++|..|..++..++
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 31 11111221346889999999999999999999998876
No 81
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.56 E-value=0.00013 Score=81.07 Aligned_cols=477 Identities=10% Similarity=0.056 Sum_probs=242.5
Q ss_pred ccchHHHHhhhcCC------CcchhHHHHHHHHHhhcCc-----h-hH----HHHHhcCchHHHHHhh----cC--Ch--
Q 009514 16 EENMEFLLSLLNNE------SENVSGLGASIISHSCKTS-----L-EQ----KLLFDAGVLKRLTSLL----GG--SL-- 71 (533)
Q Consensus 16 ~~~i~~L~~lL~~~------~~~v~~~a~~~l~~~~~~~-----~-~~----~~i~~~g~i~~L~~lL----~~--~~-- 71 (533)
++.++.|+.+++++ ++...+.+..++..++++- . .| ..+. ..++.++.++ .. +.
T Consensus 121 p~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~--~~~~~vl~ll~~~l~~~~~~~~ 198 (971)
T 2x1g_F 121 PGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIA--KRVQLVIHTVERYLKLQMNRVW 198 (971)
T ss_dssp -----HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHH--TTHHHHHHHHHHHHHHHTTSCC
T ss_pred cHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccCCCC
Confidence 45778888888865 5668888999999887421 1 11 1121 1244444444 21 22
Q ss_pred -----HHHHHHHHHHHHHhc--CChhhhhhhccccCcccHHHHHHHHh----------------cCChhhHHHHHHHHHH
Q 009514 72 -----IQRDASLESIATIFK--NNPEVVSQFVGPDTGRTLSCIIEIVK----------------DRFARTRLLASLCLIV 128 (533)
Q Consensus 72 -----~v~~~al~aL~~l~~--~~~~~~~~~~~~~~~~~i~~l~~ll~----------------~~~~~v~~~a~~~L~~ 128 (533)
.++..++.|+..... ..|.. . ....++.++. +. ++++..+..|+.|+..
T Consensus 199 ~~~~~~~~~~al~~l~~~~~~~~ip~~---~----~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 270 (971)
T 2x1g_F 199 DAEAYSNMNRAVKCVGTWIKNIGYTIE---G----CVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESCLKTMVN 270 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCCCGG---G----HHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHHHHhhCCcCcc---c----cccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHHHHHHHH
Confidence 688889999876543 22211 1 1234555555 41 1456889999999999
Q ss_pred hhhcCCCcchhhhhHhhhHHHHHHhc-------C-CC---CchhhhHHHHHHhhhcCCHHHHH-H---------HHHcCc
Q 009514 129 IRNASPCYLQDVGIKTKLINNLLELL-------D-DP---GRVGDEASFAFSSLIAEKEDMQK-L---------AFEVNG 187 (533)
Q Consensus 129 l~~~~~~~~~~~~~~~~~i~~L~~ll-------~-~~---~~~~~~a~~~L~~l~~~~~~~~~-~---------~~~~~~ 187 (533)
+....+.+.....+ ...+|.++.+. . ++ .+.....+..+..++......-. . -.-...
T Consensus 271 i~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 349 (971)
T 2x1g_F 271 IIIQPDCHNYPKTA-FVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVHRI 349 (971)
T ss_dssp HHHCSGGGGCHHHH-HHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHcCccccccHHHH-HHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHHHH
Confidence 88743211111111 23445554432 2 22 24445556666666543322110 0 000122
Q ss_pred HHHHHHhhhcC---CCCchhHHHHHHHHHHhhccc---------hhhhHhhhh--hchHHHHHHhcCCC--------C--
Q 009514 188 VDKLYNHLQKG---SLHPRRFEGILLALADMCSKL---------ECCRSRCLS--LQVLKLVVDALAHD--------S-- 243 (533)
Q Consensus 188 l~~L~~~L~~~---~~~~~~~~~a~~aL~~l~~~~---------~~~~~~~~~--~~~l~~l~~~L~~~--------~-- 243 (533)
++.++.+.... ..++.+...++.....++... +.....+.. ...++.++.-+.-+ +
T Consensus 350 l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~ 429 (971)
T 2x1g_F 350 VQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSD 429 (971)
T ss_dssp HHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHH
T ss_pred HHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHh
Confidence 34444433220 124667888888877765310 111111111 13455555555321 1
Q ss_pred -----HHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC-----CCHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 009514 244 -----SDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD-----TSTAVQVAALGAISNIVVDFTTRRSTFIR 313 (533)
Q Consensus 244 -----~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~-----~~~~v~~~a~~aL~nl~~~~~~~~~~~~~ 313 (533)
...|..+..+|..++...+. . .-..+++.+-+.+.+ +++..++.++.+++.++.+......
T Consensus 430 e~~~f~~~R~~~~~~l~~~~~~~~~---~--~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~---- 500 (971)
T 2x1g_F 430 DLECFRCYRQDISDTFMYCYDVLND---Y--ILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK---- 500 (971)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCTT---H--HHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH---H--HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh----
Confidence 14667777788777654221 1 111222333333332 6788999999999999876543221
Q ss_pred hCcHHHHHHhh---c--CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514 314 LGGVKLLVQLS---K--SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 314 ~~~i~~L~~ll---~--~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~ 388 (533)
..++.++.++ . ++++.+|..++|+++.++...... . ..+ ...++.+++.+ + +.++..|++++.+++..
T Consensus 501 -~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~-~-~~l-~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~ 573 (971)
T 2x1g_F 501 -RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN-P-AYI-PPAINLLVRGL-N--SSMSAQATLGLKELCRD 573 (971)
T ss_dssp -CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CH-HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC-H-HHH-HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHH
Confidence 2233333322 3 347899999999999987643311 1 111 12355666666 3 78999999999999965
Q ss_pred CcchHHHHHhhcCchHHHHHHHhccC-CchhHHHHHHHHHHHhccCC-hhhHHHHHHHhhHhhhhhhHHHHHHhhccC--
Q 009514 389 RINSVEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGK-ESHKEAVMDQLLLRAENKAQSCIIKFLQSN-- 464 (533)
Q Consensus 389 ~~~~~~~i~~~~~~~~~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~-- 464 (533)
... .+...-+.+++.+...+... .+.+.+..+..+++.++... ++.....++.++ ..++..+...++..
T Consensus 574 ~~~---~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll----~~l~~~l~~~~~~~~~ 646 (971)
T 2x1g_F 574 CQL---QLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIV----SPCFEELQAICQADSK 646 (971)
T ss_dssp CHH---HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHH----HHHHHHHHHHHTC---
T ss_pred HHH---hccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----HHHHHHHHHHHhcCCC
Confidence 433 23332222667776767652 24577888888888776532 233444443211 12223333333333
Q ss_pred ChhHHHHHHHHHHhhcC---CCCCC----c-----HHHHHHHHHCCcHHHHHhhhcC--CCCcHHHHHHHHHHHHhh
Q 009514 465 DSRLRTAAVWAVLNLTC---SSSPG----S-----SGRLVKLHDAGIVSHVKNMVND--PCLDVKLRVKTALEQFNS 527 (533)
Q Consensus 465 ~~~v~~~a~~~L~~l~~---~~~~~----~-----~~~~~~l~~~g~~~~L~~ll~~--~~~~v~~~a~~aL~~~~~ 527 (533)
+.+.+.....++..++. .-... . .+.... ....+.+.+..+++. .+.++.+++..+++++..
T Consensus 647 ~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 647 TPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHH-HHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 33334444444433331 00000 0 011111 123467777777643 255888999999988654
No 82
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.56 E-value=0.00013 Score=80.96 Aligned_cols=437 Identities=9% Similarity=0.017 Sum_probs=221.9
Q ss_pred ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCch-------hHHHH--HhcCchHHHHHh-------hcCC----hHHH-
Q 009514 16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSL-------EQKLL--FDAGVLKRLTSL-------LGGS----LIQR- 74 (533)
Q Consensus 16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~-------~~~~i--~~~g~i~~L~~l-------L~~~----~~v~- 74 (533)
++.++.|+.+++++++..++.+..++..+++... .+..+ .-....++++++ +..+ ..++
T Consensus 122 p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~ 201 (960)
T 1wa5_C 122 PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNI 201 (960)
T ss_dssp TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHH
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 6788999999999999999999999999986432 11111 112234444443 3321 1122
Q ss_pred -----HHHHHHHHHHh-cCChhhhhhhccccCcccHHHHHHHHhcC------C---------hhhHHHHHHHHHHhhhcC
Q 009514 75 -----DASLESIATIF-KNNPEVVSQFVGPDTGRTLSCIIEIVKDR------F---------ARTRLLASLCLIVIRNAS 133 (533)
Q Consensus 75 -----~~al~aL~~l~-~~~~~~~~~~~~~~~~~~i~~l~~ll~~~------~---------~~v~~~a~~~L~~l~~~~ 133 (533)
..+++++..+. .+.++....- -...++.+...+... + ..++..+..++..+....
T Consensus 202 ~~~~~~~~~k~~~~l~~~~~~~~~~~~----~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~ 277 (960)
T 1wa5_C 202 LFDVLLVLIKLYYDFNCQDIPEFFEDN----IQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRY 277 (960)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHT----HHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHH----HHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 23455555543 2223221110 011223333444221 1 245677788888777643
Q ss_pred CCcchhhhhHhhhHHHHHHhcC------CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHH-----Hhhhc-----
Q 009514 134 PCYLQDVGIKTKLINNLLELLD------DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY-----NHLQK----- 197 (533)
Q Consensus 134 ~~~~~~~~~~~~~i~~L~~ll~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~-----~~L~~----- 197 (533)
+.... -.-...++..++++. .++.+...+...+..++... .....+.....++.++ ..+.-
T Consensus 278 ~~~f~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~-~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~ 354 (960)
T 1wa5_C 278 EDVFG--PMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP-KYFEIFNNESAMNNITEQIILPNVTLREEDV 354 (960)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH-HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGT
T ss_pred HHHHH--HHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH-hHHHHHcCchHHHHHHHHHhHHhcCCCHHHH
Confidence 32111 112345555566553 12345566777776665432 1111110001223233 22210
Q ss_pred ----------------CCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC------CCCHHHHHHHHHHHH
Q 009514 198 ----------------GSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA------HDSSDVRSAACMCLR 255 (533)
Q Consensus 198 ----------------~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~------~~~~~v~~~a~~~L~ 255 (533)
.+.....|..|...|..++..-+ +.+ -..+++.+.+.+. +.+|..|.+|..+++
T Consensus 355 e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v-~~~~l~~i~~~l~~~~~~~~~~w~~reaal~alg 430 (960)
T 1wa5_C 355 ELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLV-TNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFT 430 (960)
T ss_dssp TTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHH-HHHHHHHHHHHHHHHHC----CHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhH-HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHH
Confidence 00112356677777777764322 111 1123444444454 568899999999999
Q ss_pred HHhhccccccchhhh----hcCcHHH----HHHhhcCC---CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhh
Q 009514 256 SVSRSIKNLSAGSFM----NETIVIP----LVRLLDDT---STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLS 324 (533)
Q Consensus 256 ~ls~~~~~~~~~~~~----~~~~i~~----Lv~lL~~~---~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll 324 (533)
.++......... .. ...+.+. ++..+.++ ++-+|..|+|+++.++....+ ... ...++.+++.+
T Consensus 431 aia~~~~~~~~~-~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~---~~l-~~~l~~l~~~L 505 (960)
T 1wa5_C 431 ALAINGNITNAG-VSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK---AQL-IELMPILATFL 505 (960)
T ss_dssp HHHBSSCCBTTB-CCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH---HHH-HHHHHHHHHHT
T ss_pred HHHHHhccccCC-cccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH---HHH-HHHHHHHHHHh
Confidence 997531100000 00 0022232 33344666 899999999999999865421 222 35678888888
Q ss_pred cCCCHHHHHHHHHHHHHhhccCC------hH-hHHHHHH--hhcHHHHHhhhCCCC---h--hHHHHHHHHHHHhhcCCc
Q 009514 325 KSMDSTIRLNALRALRNLIFLAE------DK-CKEEIFM--ELTASLLASLICDPE---P--SVQEQALALVRNLVDGRI 390 (533)
Q Consensus 325 ~~~~~~~~~~al~aL~~l~~~~~------~~-~~~~i~~--~~~~~~l~~lL~~~~---~--~v~~~a~~~L~~l~~~~~ 390 (533)
.+++..++.+|++||.+++...+ ++ .+..+.. ...++.+..++.... . ...+.++.++..++....
T Consensus 506 ~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~ 585 (960)
T 1wa5_C 506 QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSE 585 (960)
T ss_dssp TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHH
Confidence 88889999999999999886321 11 1111111 223555666665531 1 123455555555543211
Q ss_pred chHHHHHhhcCchHHHHHHHh----ccCCchhHHHHHHHHHHHhccC-ChhhHHHHHHHhhHhhhhhhHHHHHHhhccCC
Q 009514 391 NSVEYIFAEDGIILDAVGRQL----RIASKAEIEIQGMYVLGNVATG-KESHKEAVMDQLLLRAENKAQSCIIKFLQSND 465 (533)
Q Consensus 391 ~~~~~i~~~~~~~~~~L~~~L----~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~ 465 (533)
+.+. .....+++.+...+ .+..++.....++.+|+.++.. .++....+. ..++|.+...|....
T Consensus 586 ~~~~---p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--------~~~~p~~~~iL~~~~ 654 (960)
T 1wa5_C 586 DSIQ---PLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--------DSMMPTFLTVFSEDI 654 (960)
T ss_dssp TTTG---GGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--------HHHHHHHHHHHHTTC
T ss_pred Hhhh---hHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--------HHHHHHHHHHHHhhh
Confidence 1111 10001333333333 3323456666677777777764 333333333 456678888887654
Q ss_pred hhHHHHHHHHHHhh
Q 009514 466 SRLRTAAVWAVLNL 479 (533)
Q Consensus 466 ~~v~~~a~~~L~~l 479 (533)
.+....+...+..+
T Consensus 655 ~~~~~~~~~i~~~l 668 (960)
T 1wa5_C 655 QEFIPYVFQIIAFV 668 (960)
T ss_dssp TTTHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 45555555544444
No 83
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.50 E-value=1.6e-06 Score=83.13 Aligned_cols=274 Identities=15% Similarity=0.106 Sum_probs=148.7
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchh
Q 009514 189 DKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGS 268 (533)
Q Consensus 189 ~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~ 268 (533)
...++++.+. +...+.-.-..+..++...++. + =++..+.+=++++++-+|-.|.++++++... .
T Consensus 71 ~~v~kl~~s~--d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~----- 135 (355)
T 3tjz_B 71 FAMTKLFQSN--DPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--T----- 135 (355)
T ss_dssp HHHHGGGGCC--CHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--T-----
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--H-----
Confidence 3455666554 3556665555666655432221 1 3467778888899999999999999988543 1
Q ss_pred hhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCCh
Q 009514 269 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAED 348 (533)
Q Consensus 269 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~ 348 (533)
.-..+.+.+-+.+.+.++-|+..|+-+...+....++ ++ .++++.+-+++.+.++-+..+|+.+|..+.... .
T Consensus 136 -m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe----~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d-~ 208 (355)
T 3tjz_B 136 -MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD----VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKND-R 208 (355)
T ss_dssp -THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH----HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC-H
T ss_pred -HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc-h
Confidence 1234566778888999999999999999999866554 33 378999999999999999999999999987532 1
Q ss_pred HhHHHHHHhhcHHHHHhhhCCC---ChhHHHHHHHHHHHhhcCC-cchHHHHHhhcCchHHHHHHHhccCCchhHHHHHH
Q 009514 349 KCKEEIFMELTASLLASLICDP---EPSVQEQALALVRNLVDGR-INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGM 424 (533)
Q Consensus 349 ~~~~~i~~~~~~~~l~~lL~~~---~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~ 424 (533)
. .+..++.-+... ++-.+...++.++.+...+ +... ..+++.+...|++ .++.|.-+|+
T Consensus 209 ---~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~-------~~~~~~l~~~L~~-~~~aVvyEa~ 271 (355)
T 3tjz_B 209 ---L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRD-------SPLFDFIESCLRN-KHEMVVYEAA 271 (355)
T ss_dssp ---H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC------------------------CCCCC-SSHHHHHHHH
T ss_pred ---H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhH-------HHHHHHHHHHHcC-CChHHHHHHH
Confidence 1 122223322221 3444444444444444433 2111 1156677777776 7889999999
Q ss_pred HHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHH
Q 009514 425 YVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVK 504 (533)
Q Consensus 425 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~ 504 (533)
.++..+...... .. ..+++.+..+|.++++++|..|...|..+... .+ ..+. ..-.-+.
T Consensus 272 k~I~~l~~~~~~----~~--------~~a~~~L~~fLss~d~niryvaLr~L~~l~~~----~P---~~v~--~~n~~ie 330 (355)
T 3tjz_B 272 SAIVNLPGCSAK----EL--------APAVSVLQLFCSSPKAALRYAAVRTLNKVAMK----HP---SAVT--ACNLDLE 330 (355)
T ss_dssp HHHTC-----------------------CCCTHHHHHHSSSSSSHHHHHHCC----------------------------
T ss_pred HHHHhccCCCHH----HH--------HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH----Cc---HHHH--HHHHHHH
Confidence 999887642211 22 23446778889999999999999999988852 11 1121 2345778
Q ss_pred hhhcCCCCcHHHHHHHHH
Q 009514 505 NMVNDPCLDVKLRVKTAL 522 (533)
Q Consensus 505 ~ll~~~~~~v~~~a~~aL 522 (533)
++++|++..+.-.|.+.|
T Consensus 331 ~li~d~n~sI~t~Aittl 348 (355)
T 3tjz_B 331 NLVTDANRSIATLAITTL 348 (355)
T ss_dssp ------------------
T ss_pred HHccCCcHhHHHHHHHHh
Confidence 888888888766655544
No 84
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.47 E-value=4.6e-08 Score=80.59 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=91.1
Q ss_pred hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchH
Q 009514 314 LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSV 393 (533)
Q Consensus 314 ~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 393 (533)
...++.+..+++++++.+|..|+++|+++.. . .++.|+++|+++++.++..++++|.++... .
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~-----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~~--~-- 73 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD--E-----------AFEPLLESLSNEDWRIRGAAAWIIGNFQDE--R-- 73 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCSS--T-----------THHHHHHGGGCSCHHHHHHHHHHHGGGCSH--H--
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h-----------HHHHHHHHHcCCCHHHHHHHHHHHHhcCCH--H--
Confidence 4567888999999999999999999987632 1 257888999999999999999999988631 1
Q ss_pred HHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHH
Q 009514 394 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAV 473 (533)
Q Consensus 394 ~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~ 473 (533)
.++.|...|.+ +++.|+..++++|+++.. ...++.|+.+++++++.+|..|+
T Consensus 74 ---------a~~~L~~~L~d-~~~~VR~~A~~aL~~~~~------------------~~a~~~L~~~l~d~~~~vr~~A~ 125 (131)
T 1te4_A 74 ---------AVEPLIKLLED-DSGFVRSGAARSLEQIGG------------------ERVRAAMEKLAETGTGFARKVAV 125 (131)
T ss_dssp ---------HHHHHHHHHHH-CCTHHHHHHHHHHHHHCS------------------HHHHHHHHHHTTSCCTHHHHHHH
T ss_pred ---------HHHHHHHHHcC-CCHHHHHHHHHHHHHhCc------------------HHHHHHHHHHHhCCCHHHHHHHH
Confidence 56777777776 899999999999998752 23447888999999999999999
Q ss_pred HHHHhh
Q 009514 474 WAVLNL 479 (533)
Q Consensus 474 ~~L~~l 479 (533)
++|.++
T Consensus 126 ~aL~~i 131 (131)
T 1te4_A 126 NYLETH 131 (131)
T ss_dssp HHGGGC
T ss_pred HHHHhC
Confidence 998764
No 85
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.47 E-value=6.9e-05 Score=73.47 Aligned_cols=343 Identities=13% Similarity=0.125 Sum_probs=190.5
Q ss_pred cccHHHHHHHHh-cCChhhHHHHHHHHHHhhhcCCC--cchhhhhHh-hhHHHHHH-hcCCCCc-hhhhHHHHHHhhhcC
Q 009514 101 GRTLSCIIEIVK-DRFARTRLLASLCLIVIRNASPC--YLQDVGIKT-KLINNLLE-LLDDPGR-VGDEASFAFSSLIAE 174 (533)
Q Consensus 101 ~~~i~~l~~ll~-~~~~~v~~~a~~~L~~l~~~~~~--~~~~~~~~~-~~i~~L~~-ll~~~~~-~~~~a~~~L~~l~~~ 174 (533)
+..+..++.+++ ..+.++.......+..+....+. .....+... .....+.. ++..++. ....+..+++.++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 456677888777 45667777777777777776541 011111111 11111222 2322222 344555555555422
Q ss_pred C---HHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhc--hHHHHHHhcC----C----
Q 009514 175 K---EDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ--VLKLVVDALA----H---- 241 (533)
Q Consensus 175 ~---~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~--~l~~l~~~L~----~---- 241 (533)
. ++.....+.. +.++..|.+.+ +...+..++.+|..+... +..|..+.+.+ .+|.+++++. +
T Consensus 156 ~~~~~~~l~~l~~~---~~~~~~L~~~~-~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~ 230 (480)
T 1ho8_A 156 GLHNVKLVEKLLKN---NNLINILQNIE-QMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLAT 230 (480)
T ss_dssp TTCCHHHHHHHHHC---HHHHHHHHCTT-CHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred CCccHhHHHHHhhh---HHHHHHhcccc-CCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcccccc
Confidence 2 1111111110 13555555431 233455688888888764 57888887653 4676655433 1
Q ss_pred -------C--CHHHHHHHHHHHHHHhhccccccchhhhhcCcH--HHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchh--
Q 009514 242 -------D--SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIV--IPLVRLLD-DTSTAVQVAALGAISNIVVDFTTR-- 307 (533)
Q Consensus 242 -------~--~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i--~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~-- 307 (533)
+ ..++++.++-|++-++++.+ .... +...++. +.|+.+++ +..+++-.-++.+|.|+.......
T Consensus 231 ~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~-l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~ 308 (480)
T 1ho8_A 231 RIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANE-LVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHK 308 (480)
T ss_dssp --------CCHHHHHHHHHHHHHHHTTSHH-HHHH-HHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred ccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHH-HHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhh
Confidence 1 34678999999999999843 3333 4444433 56777776 567899999999999999754211
Q ss_pred ---HHHHHHhCcHHHHHHhhcC---CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHH
Q 009514 308 ---RSTFIRLGGVKLLVQLSKS---MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALAL 381 (533)
Q Consensus 308 ---~~~~~~~~~i~~L~~ll~~---~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~ 381 (533)
.+.++..++++ ++..+.. .|+++... +..|..... +. ++-+. ..-+.....
T Consensus 309 ~~~~~~~~~~~~l~-~l~~L~~rk~~Dedl~ed-l~~L~e~L~-------~~----------~~~lt----sfDeY~~El 365 (480)
T 1ho8_A 309 KVIKQLLLLGNALP-TVQSLSERKYSDEELRQD-ISNLKEILE-------NE----------YQELT----SFDEYVAEL 365 (480)
T ss_dssp HHHHHHHHHHCHHH-HHHHHHSSCCSSHHHHHH-HHHHHHHHH-------HH----------HHTCC----HHHHHHHHH
T ss_pred hHHHHHHHHccchH-HHHHHhhCCCCcHHHHHH-HHHHHHHHH-------HH----------HHhcc----cHHHHHHHH
Confidence 22333345544 4444443 34554332 112211111 00 00000 011112222
Q ss_pred HHHhhcCCcchHH-HHHhhc--------CchHHHHHHHhcc---------CCchhHHHHHHHHHHHhccCChhhHHHHHH
Q 009514 382 VRNLVDGRINSVE-YIFAED--------GIILDAVGRQLRI---------ASKAEIEIQGMYVLGNVATGKESHKEAVMD 443 (533)
Q Consensus 382 L~~l~~~~~~~~~-~i~~~~--------~~~~~~L~~~L~~---------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 443 (533)
.+.....+|-+.. .++.++ ..++..|.++|.+ +.++.+..-||+-|+.++...|..+. +++
T Consensus 366 ~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~-i~~ 444 (480)
T 1ho8_A 366 DSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESID-VLD 444 (480)
T ss_dssp HHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHH-HHH
T ss_pred hcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhH-HHH
Confidence 2222233332221 333332 2377888888874 34788899999999999987775444 555
Q ss_pred HhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514 444 QLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 444 ~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~ 480 (533)
+ .|+-..+++++.++|++||.+|..|+..+.
T Consensus 445 ~------lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 445 K------TGGKADIMELLNHSDSRVKYEALKATQAII 475 (480)
T ss_dssp H------HSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred H------cCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3 788899999999999999999999988765
No 86
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.43 E-value=0.00022 Score=79.35 Aligned_cols=468 Identities=13% Similarity=0.099 Sum_probs=240.2
Q ss_pred ccchHHHHhhhc-CCCcchhHHHHHHHHHhhcC-----c-hhHHHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcC-
Q 009514 16 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----S-LEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKN- 87 (533)
Q Consensus 16 ~~~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~-----~-~~~~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~- 87 (533)
+++++.+..+|. +.+..+|..|+.+|.+.... + +.+..+ +...++.+...-.++..+|.+...+++.++..
T Consensus 56 p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~i-r~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~ 134 (963)
T 2x19_B 56 PQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESL-KAQLFTQITRFASGSKIVLTRLCVALASLALSM 134 (963)
T ss_dssp TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHH-HHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 467777888886 34667888888888875532 1 223333 33344444442223567888888888888643
Q ss_pred ChhhhhhhccccCcccHHHHHHHHhc-----CChhhHHHHHHHHHHhhhcC-CCc--------chhhhh--HhhhHHHHH
Q 009514 88 NPEVVSQFVGPDTGRTLSCIIEIVKD-----RFARTRLLASLCLIVIRNAS-PCY--------LQDVGI--KTKLINNLL 151 (533)
Q Consensus 88 ~~~~~~~~~~~~~~~~i~~l~~ll~~-----~~~~v~~~a~~~L~~l~~~~-~~~--------~~~~~~--~~~~i~~L~ 151 (533)
.|+.+ .+.++.++..+++ +++..+..+..+|..+.... ..+ .++.+. -..+++.+.
T Consensus 135 ~p~~W--------p~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~ 206 (963)
T 2x19_B 135 MPDAW--------PCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLE 206 (963)
T ss_dssp TTTTS--------TTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHH
T ss_pred Ccccc--------chHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333 4578888888876 35556778888888776421 000 010010 123444455
Q ss_pred HhcCCCC---chhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhh-hHhhh
Q 009514 152 ELLDDPG---RVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECC-RSRCL 227 (533)
Q Consensus 152 ~ll~~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~-~~~~~ 227 (533)
+++.+.. .+...+..++.....-.... ......++.+.+.+. +++.++.++.++..+....+.. ....+
T Consensus 207 ~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~---~~~~~ll~~l~~~l~----~~~~~~~a~~~l~~i~~~~~~~~~~~~~ 279 (963)
T 2x19_B 207 QLLQQPSSPSCVRQKVLKCFSSWVQLEVPL---QDCEALIQAAFAALQ----DSELFDSSVEAIVNAISQPDAQRYVNTL 279 (963)
T ss_dssp HHHSCTTCCHHHHHHHHHHHHHHHTSSCCG---GGTHHHHHHHHHHTT----STTTHHHHHHHHHHHHTCTTGGGCHHHH
T ss_pred HHHhCCCCchHHHHHHHHHHHHHHcCCCCc---ccchHHHHHHHHHhC----CchHHHHHHHHHHHHHcccccccCHHHH
Confidence 5554321 24445555553322100000 000122455555553 3668899999999987642111 11111
Q ss_pred ----h--hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccc----hhhhhcCcHHHHHHhhcC-----CCHHHHHH
Q 009514 228 ----S--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSA----GSFMNETIVIPLVRLLDD-----TSTAVQVA 292 (533)
Q Consensus 228 ----~--~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~----~~~~~~~~i~~Lv~lL~~-----~~~~v~~~ 292 (533)
. .+..+.+.+.+..++.......+.++..++......-. ..-.-..+++.++.+..+ .+.++...
T Consensus 280 ~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~ 359 (963)
T 2x19_B 280 LKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSL 359 (963)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGG
T ss_pred HHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhh
Confidence 0 01122222233345556666667777776543111000 000001344455555554 35556666
Q ss_pred HHHHHHHHhcCC--------chhHH---HHHHhCcHHHHHHhhcCCCH---------------HHHHHHHHHHHHhhccC
Q 009514 293 ALGAISNIVVDF--------TTRRS---TFIRLGGVKLLVQLSKSMDS---------------TIRLNALRALRNLIFLA 346 (533)
Q Consensus 293 a~~aL~nl~~~~--------~~~~~---~~~~~~~i~~L~~ll~~~~~---------------~~~~~al~aL~~l~~~~ 346 (533)
+......++... ..... ..+ ...++.++..+..+++ ..|..+..+|..++...
T Consensus 360 ~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~ 438 (963)
T 2x19_B 360 TLTFWYTLQDDILSFEAEKQAVYQQVYRPVY-FQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEML 438 (963)
T ss_dssp GHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH-HHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 666655555411 01111 111 1234444444433221 12444444554443221
Q ss_pred ChHhHHHHHHhhcHHHHHhhh----CCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccC--CchhHH
Q 009514 347 EDKCKEEIFMELTASLLASLI----CDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIA--SKAEIE 420 (533)
Q Consensus 347 ~~~~~~~i~~~~~~~~l~~lL----~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~--~~~~v~ 420 (533)
+. .++. ...+.+...+ .+.++..++.++++++.++.+..+... . .++.+...+..- +++.++
T Consensus 439 ~~----~~l~-~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~------~-~l~~l~~~l~~l~~~~~~vr 506 (963)
T 2x19_B 439 GA----ELLS-NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYS------D-VVPGLIGLIPRISISNVQLA 506 (963)
T ss_dssp TH----HHHH-HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCC------S-HHHHHHHHGGGSCCCSHHHH
T ss_pred cH----HHHH-HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhh------H-HHHHHHHHHHhCCCCcHHHH
Confidence 11 1111 1233444444 567899999999999999977543111 1 233333333211 467899
Q ss_pred HHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcH
Q 009514 421 IQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIV 500 (533)
Q Consensus 421 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~ 500 (533)
..++|+++.++.--..+. ..+ ..+++.++..|++ +.|+..|++++.+++... ........ ..++
T Consensus 507 ~~~~~~l~~~~~~l~~~~-~~l--------~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~----~~~l~p~~-~~il 570 (963)
T 2x19_B 507 DTVMFTIGALSEWLADHP-VMI--------NSVLPLVLHALGN--PELSVSSVSTLKKICREC----KYDLPPYA-ANIV 570 (963)
T ss_dssp HHHHHHHHHTHHHHHHCH-HHH--------TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHT----GGGCTTTH-HHHH
T ss_pred HHHHHHHHHHHHHHHhCH-HHH--------HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHH----HHHHHhhH-HHHH
Confidence 999999999875211111 233 4677888888865 789999999999999411 11100000 1234
Q ss_pred HHHHhhhcCC--CCcHHHHHHHHHHHHhhh
Q 009514 501 SHVKNMVNDP--CLDVKLRVKTALEQFNSF 528 (533)
Q Consensus 501 ~~L~~ll~~~--~~~v~~~a~~aL~~~~~~ 528 (533)
..|.+++..+ +.+.+..+.+|++.+...
T Consensus 571 ~~l~~~l~~~~~~~~~~~~~~eai~~i~~~ 600 (963)
T 2x19_B 571 AVSQDVLMKQIHKTSQCMWLMQALGFLLSA 600 (963)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHHHHhc
Confidence 4555555542 346777788888887654
No 87
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.41 E-value=0.00041 Score=77.72 Aligned_cols=432 Identities=11% Similarity=0.046 Sum_probs=222.1
Q ss_pred ccchHHHHhhhc-CCCcchhHHHHHHHHHhhcC-----chhHHHHHhcCchHHHHHhhcC------ChHHHHHHHHHHHH
Q 009514 16 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGG------SLIQRDASLESIAT 83 (533)
Q Consensus 16 ~~~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~-----~~~~~~i~~~g~i~~L~~lL~~------~~~v~~~al~aL~~ 83 (533)
++.+..+..+|. +.+..+|..|+.+|-+.... +.....-.+...++.+...-.+ +..+|.+...+++.
T Consensus 47 p~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~ 126 (1049)
T 3m1i_C 47 PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQ 126 (1049)
T ss_dssp TTGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHH
Confidence 345555666664 34566777777777765432 1222222222233333332211 24567777777777
Q ss_pred HhcC-ChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCC----Cc---ch-----hhhhH--hhhHH
Q 009514 84 IFKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP----CY---LQ-----DVGIK--TKLIN 148 (533)
Q Consensus 84 l~~~-~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~---~~-----~~~~~--~~~i~ 148 (533)
++.. -|+.+ .+.++.++..++ .++..+..+..+|..+...-. .. .+ +.+.. ..+++
T Consensus 127 Ia~~~~p~~W--------p~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~ 197 (1049)
T 3m1i_C 127 ILKQEWPQNW--------PEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFK 197 (1049)
T ss_dssp HHHHHTTTTC--------TTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcccc--------hHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7643 23332 457888888886 455556667777776653211 00 00 11111 12233
Q ss_pred HHHHhcCC--CCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccc--hh---
Q 009514 149 NLLELLDD--PGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKL--EC--- 221 (533)
Q Consensus 149 ~L~~ll~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~--~~--- 221 (533)
.+.+++.+ +..++..+..++......-+. ..+.+...++.+.+.+.. ++.++..++.+|..+.... +.
T Consensus 198 ~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~--~~~~~~~ll~~l~~~~l~---~~~~~~~a~~~L~~i~~~~~~~~~~~ 272 (1049)
T 3m1i_C 198 LCFQVLEQGSSSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDL 272 (1049)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHHCCCCTTCHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH--HHHhhhhHHHHHHHHhCC---CHhHHHHHHHHHHHHHhCCCCcchhh
Confidence 33444442 235667777777665443221 123344555666633332 3678899999998887642 11
Q ss_pred hhHhhhh--hchHHHHHH-h-------------cCCCCHHHHHHHHHHHHHHhhccccc------cchhhhhcCcHHHHH
Q 009514 222 CRSRCLS--LQVLKLVVD-A-------------LAHDSSDVRSAACMCLRSVSRSIKNL------SAGSFMNETIVIPLV 279 (533)
Q Consensus 222 ~~~~~~~--~~~l~~l~~-~-------------L~~~~~~v~~~a~~~L~~ls~~~~~~------~~~~~~~~~~i~~Lv 279 (533)
....+.. .+.+..+.. + -.+.+.++....++.+..+....... ... .-..+++.++
T Consensus 273 ~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~l~~~l~~ll 350 (1049)
T 3m1i_C 273 IKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRE--LLLNAHQYLI 350 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHH--HHHHHHHHHH
Confidence 1111110 122222211 1 12234555556666665554321100 000 0123455566
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhc----CC--chhHHHHHHhCcHHHHHHhhcCC-------------------CH---HH
Q 009514 280 RLLDDTSTAVQVAALGAISNIVV----DF--TTRRSTFIRLGGVKLLVQLSKSM-------------------DS---TI 331 (533)
Q Consensus 280 ~lL~~~~~~v~~~a~~aL~nl~~----~~--~~~~~~~~~~~~i~~L~~ll~~~-------------------~~---~~ 331 (533)
.....++.++...|......++. .. ......++ ...++.++..+..+ +. ..
T Consensus 351 ~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~ 429 (1049)
T 3m1i_C 351 QLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1049)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHH
Confidence 66667788998888877777764 11 11111222 23445555444221 11 22
Q ss_pred HHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC--CCChhHHHHHHHHHHHhhcCCcchHH-HHHhhcCchHHHHH
Q 009514 332 RLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDGRINSVE-YIFAEDGIILDAVG 408 (533)
Q Consensus 332 ~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~-~i~~~~~~~~~~L~ 408 (533)
+..+..+|..++.-. + ..++ ....+.+.+.+. +.++..++.++++++.++........ .++. .+++.+.
T Consensus 430 ~~~~~~~L~~l~~~~-~---~~~l-~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~---~v~~~l~ 501 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLN-V---IDTE-EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV---TVIKDLL 501 (1049)
T ss_dssp HHHHHHHHHHHHHHC-H---HHHH-HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHccC-H---HHHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH---HHHHHHH
Confidence 444555555554311 1 1111 122344444554 46889999999999999865432211 1111 1455554
Q ss_pred HHhcc----CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 409 RQLRI----ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 409 ~~L~~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
.+... ++.+-++..++|+++.++.-...+ ...+ ..+++.++..+.++++.|+..|++++.+++.
T Consensus 502 ~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l--------~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 502 DLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFL--------RTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHH--------HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHH--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 43221 133455667999999877421111 1222 3566788888888899999999999999995
No 88
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.41 E-value=0.00026 Score=78.71 Aligned_cols=452 Identities=9% Similarity=0.016 Sum_probs=234.5
Q ss_pred hcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhhhhhccccCccc
Q 009514 26 LNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRT 103 (533)
Q Consensus 26 L~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~ 103 (533)
..+++...+..|-..|..+-..+ ++.+.+..+|.+ +..+|..|+..|.+....+ +..+.. .....
T Consensus 34 ~~~~~~~~r~~A~~~L~~~~~~p---------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~---w~~l~~-~~~~~ 100 (963)
T 2x19_B 34 YYDPNIENKNLAQKWLMQAQVSP---------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRY---WSDIPT-DQYES 100 (963)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHST---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHC---GGGSCG-GGHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhcCH---------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhC---HHhCCH-HHHHH
Confidence 44567777888887877765433 455667777764 5689999999998865322 111110 01112
Q ss_pred HH-HHHHHHhc---CChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCC------CCchhhhHHHHHHhhhc
Q 009514 104 LS-CIIEIVKD---RFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDD------PGRVGDEASFAFSSLIA 173 (533)
Q Consensus 104 i~-~l~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~------~~~~~~~a~~~L~~l~~ 173 (533)
+. .++..+.+ .++.+|...+.++..++...- . ..+.+.++.|++.++. +......+..+|..+.+
T Consensus 101 ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~---p--~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~e 175 (963)
T 2x19_B 101 LKAQLFTQITRFASGSKIVLTRLCVALASLALSMM---P--DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPE 175 (963)
T ss_dssp HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHT---T--TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhC---c--cccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHH
Confidence 22 24444433 357889888999998877531 1 1145788999998874 22244556666666653
Q ss_pred CC-----HHHHHHHHH---cCcHHH----HHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCC
Q 009514 174 EK-----EDMQKLAFE---VNGVDK----LYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAH 241 (533)
Q Consensus 174 ~~-----~~~~~~~~~---~~~l~~----L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~ 241 (533)
+. ...++.... ...++. +..++.+...+..++..++.++.....-... .......++.+.+++.
T Consensus 176 e~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~---~~~~~~ll~~l~~~l~- 251 (963)
T 2x19_B 176 EFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVP---LQDCEALIQAAFAALQ- 251 (963)
T ss_dssp HHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCC---GGGTHHHHHHHHHHTT-
T ss_pred HHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCC---cccchHHHHHHHHHhC-
Confidence 10 101111111 112333 3444444322223666677776544321110 1122456788888774
Q ss_pred CCHHHHHHHHHHHHHHhhccccc-cchhhhhcCcHHHHHH-------hhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 009514 242 DSSDVRSAACMCLRSVSRSIKNL-SAGSFMNETIVIPLVR-------LLDDTSTAVQVAALGAISNIVVDFTTRRSTFIR 313 (533)
Q Consensus 242 ~~~~v~~~a~~~L~~ls~~~~~~-~~~~~~~~~~i~~Lv~-------lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~ 313 (533)
+++++..|+.++..+....... ... .. ...++.++. .+...|.+.....+..+..+...... .+.+
T Consensus 252 -~~~~~~~a~~~l~~i~~~~~~~~~~~-~~-~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~---~l~~ 325 (963)
T 2x19_B 252 -DSELFDSSVEAIVNAISQPDAQRYVN-TL-LKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSR---ALLD 325 (963)
T ss_dssp -STTTHHHHHHHHHHHHTCTTGGGCHH-HH-HHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred -CchHHHHHHHHHHHHHcccccccCHH-HH-HHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHH---HHHc
Confidence 6789999999999986532111 111 10 112222222 22344556656666666665532111 1110
Q ss_pred --------hCcHHHHHHhhcC-----CCHHHHHHHHHHHHHhhccC---C----hHhHH---HHHHhhcHHHHHhhhCCC
Q 009514 314 --------LGGVKLLVQLSKS-----MDSTIRLNALRALRNLIFLA---E----DKCKE---EIFMELTASLLASLICDP 370 (533)
Q Consensus 314 --------~~~i~~L~~ll~~-----~~~~~~~~al~aL~~l~~~~---~----~~~~~---~i~~~~~~~~l~~lL~~~ 370 (533)
...++.++..... .++.+...++.....++... + +..+. ..+.. .++.++.-+.-+
T Consensus 326 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~ll~~~~~p 404 (963)
T 2x19_B 326 QVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQ-LVDVLLHKAQFP 404 (963)
T ss_dssp CGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH-HHHHHHHHHSCC
T ss_pred CccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHcCC
Confidence 1344555555553 34555666666666654411 0 11111 11111 133444433322
Q ss_pred Ch---------------hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhc---cCCchhHHHHHHHHHHHhcc
Q 009514 371 EP---------------SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLR---IASKAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 371 ~~---------------~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~---~~~~~~v~~~a~~~L~~l~~ 432 (533)
+. +.+..+..+|..++...++ .++. .+++.+...+. .+.++..++.++++++.++.
T Consensus 405 ~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~~---~~l~---~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~ 478 (963)
T 2x19_B 405 SDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGA---ELLS---NLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAE 478 (963)
T ss_dssp CHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTH---HHHH---HHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTT
T ss_pred CcccccCCChhHHHHHHHHHHHHHHHHHHHHHHccH---HHHH---HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHh
Confidence 11 1123333444444321110 1111 13444444552 23677889999999999998
Q ss_pred CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCC
Q 009514 433 GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCL 512 (533)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~ 512 (533)
+........+. .+++.+.. +.++++.+|..++|+++.++.. ...+...+ ..+++.|.+.+.+ +
T Consensus 479 ~~~~~~~~~l~--------~l~~~l~~-l~~~~~~vr~~~~~~l~~~~~~----l~~~~~~l--~~vl~~l~~~l~~--~ 541 (963)
T 2x19_B 479 TIDVNYSDVVP--------GLIGLIPR-ISISNVQLADTVMFTIGALSEW----LADHPVMI--NSVLPLVLHALGN--P 541 (963)
T ss_dssp SCCSSCCSHHH--------HHHHHGGG-SCCCSHHHHHHHHHHHHHTHHH----HHHCHHHH--TTTHHHHHHHTTC--G
T ss_pred hcCchhhHHHH--------HHHHHHHh-CCCCcHHHHHHHHHHHHHHHHH----HHhCHHHH--HHHHHHHHHHhCC--c
Confidence 65421111221 22232222 2345788999999999999831 11122222 4678888888864 8
Q ss_pred cHHHHHHHHHHHHhhhc
Q 009514 513 DVKLRVKTALEQFNSFD 529 (533)
Q Consensus 513 ~v~~~a~~aL~~~~~~~ 529 (533)
.|+..|..||.++.+..
T Consensus 542 ~V~~~A~~al~~l~~~~ 558 (963)
T 2x19_B 542 ELSVSSVSTLKKICREC 558 (963)
T ss_dssp GGHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 99999999999997643
No 89
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.35 E-value=0.00014 Score=71.39 Aligned_cols=320 Identities=16% Similarity=0.155 Sum_probs=189.8
Q ss_pred cccchHHHHhhhc-CCCcchhHHHHHHHHHhhcCch---hHHHHHhcCchH--HHHH-hhcCC-hHHHHHHHHHHHHHhc
Q 009514 15 QEENMEFLLSLLN-NESENVSGLGASIISHSCKTSL---EQKLLFDAGVLK--RLTS-LLGGS-LIQRDASLESIATIFK 86 (533)
Q Consensus 15 ~~~~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~~~---~~~~i~~~g~i~--~L~~-lL~~~-~~v~~~al~aL~~l~~ 86 (533)
++.++..++++|+ ...+++.++....+..+...+. .+..++....-+ .+.. .+..+ +-....+...++.++.
T Consensus 75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~ 154 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ 154 (480)
T ss_dssp SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 3567788999999 4568888888888888776554 343343332111 1222 22233 3455666666666653
Q ss_pred CChhhhhhhccccCcccHH--HHHHHHhcC-ChhhHHHHHHHHHHhhhcCCCcchhhhhHh--hhHHHHHHhcC---C--
Q 009514 87 NNPEVVSQFVGPDTGRTLS--CIIEIVKDR-FARTRLLASLCLIVIRNASPCYLQDVGIKT--KLINNLLELLD---D-- 156 (533)
Q Consensus 87 ~~~~~~~~~~~~~~~~~i~--~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~--~~i~~L~~ll~---~-- 156 (533)
..+.....+ ...+. .++..++.. +.+.+..+++||..+..... .+..+... ..+|.+++++. +
T Consensus 155 ~~~~~~~~l-----~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~--~R~~f~~~~~~~~~~l~~il~~~~~~~ 227 (480)
T 1ho8_A 155 NGLHNVKLV-----EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE--YRDVIWLHEKKFMPTLFKILQRATDSQ 227 (480)
T ss_dssp TTTCCHHHH-----HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH--HHHHHHTTHHHHHHHHHHHHHHHHC--
T ss_pred cCCccHhHH-----HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh--HHHHHHHcccchhHHHHHHHHHhhccc
Confidence 222110000 11122 344555553 45667789999998887542 23333322 34777765443 1
Q ss_pred ---------C----CchhhhHHHHHHhhhcCCHHHHHHHHHcCcH--HHHHHhhhcCCCCchhHHHHHHHHHHhhccch-
Q 009514 157 ---------P----GRVGDEASFAFSSLIAEKEDMQKLAFEVNGV--DKLYNHLQKGSLHPRRFEGILLALADMCSKLE- 220 (533)
Q Consensus 157 ---------~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l--~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~- 220 (533)
. -.++.+++.++.-++...+ ..+.+...+.. +.|++.++... -+++..-++.+|.|+....+
T Consensus 228 ~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~-KEKvvRv~la~l~Nll~~~~~ 305 (480)
T 1ho8_A 228 LATRIVATNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITI-KEKVSRLCISIILQCCSTRVK 305 (480)
T ss_dssp -----------CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHTTSSSST
T ss_pred cccccccccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcccch
Confidence 1 1346888888888876654 33444444432 56777677663 35666777888999887542
Q ss_pred ---hhhH-hhhhhchHHHHHHhcCC---CCHHHHHHHHHHHHHHhhccc---------------cccch-----------
Q 009514 221 ---CCRS-RCLSLQVLKLVVDALAH---DSSDVRSAACMCLRSVSRSIK---------------NLSAG----------- 267 (533)
Q Consensus 221 ---~~~~-~~~~~~~l~~l~~~L~~---~~~~v~~~a~~~L~~ls~~~~---------------~~~~~----------- 267 (533)
.... .++..+++ .+++.|+. .|+++...--...-.|..... .++++
T Consensus 306 ~~~~~~~~~~~~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~E 384 (480)
T 1ho8_A 306 QHKKVIKQLLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSD 384 (480)
T ss_dssp THHHHHHHHHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHH
T ss_pred hhhhHHHHHHHHccch-HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHH
Confidence 1112 22233444 45555542 345444332222222211100 01111
Q ss_pred ---hhhh--cCcHHHHHHhhcC----------CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHH
Q 009514 268 ---SFMN--ETIVIPLVRLLDD----------TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIR 332 (533)
Q Consensus 268 ---~~~~--~~~i~~Lv~lL~~----------~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~ 332 (533)
+|-+ ...+..|+++|++ .|+.+..-||.=|+.++..++..+..+-+.|+=..+++++.++|+++|
T Consensus 385 Na~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr 464 (480)
T 1ho8_A 385 NIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVK 464 (480)
T ss_dssp HSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHH
Confidence 1222 2357889999973 378899999999999999988888777778888888999999999999
Q ss_pred HHHHHHHHHhhc
Q 009514 333 LNALRALRNLIF 344 (533)
Q Consensus 333 ~~al~aL~~l~~ 344 (533)
.+|+.|+..+..
T Consensus 465 ~~AL~avQklm~ 476 (480)
T 1ho8_A 465 YEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 90
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=98.30 E-value=0.0012 Score=73.99 Aligned_cols=455 Identities=11% Similarity=0.085 Sum_probs=237.2
Q ss_pred CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhhhhhccccCcccHH
Q 009514 28 NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQFVGPDTGRTLS 105 (533)
Q Consensus 28 ~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~i~ 105 (533)
+++...|..|-..|..+-..+ ++...+..+|.+ +..+|..|+..|.+....+ +..+.. .....|.
T Consensus 27 ~p~~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~---W~~l~~-~~~~~ir 93 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRK---WKLLPN-DHRIGIR 93 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHT---GGGSCH-HHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhh---CccCCH-HHHHHHH
Confidence 455556667777776664332 456677777753 6689999998988865321 111100 0011122
Q ss_pred -HHHHHHhc----C-----ChhhHHHHHHHHHHhhhcC-CCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcC
Q 009514 106 -CIIEIVKD----R-----FARTRLLASLCLIVIRNAS-PCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAE 174 (533)
Q Consensus 106 -~l~~ll~~----~-----~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~ 174 (533)
.++..+.+ + ++.+|...+.++..++... +. .+.+.++.|++.++.++..+..+..+|..+.++
T Consensus 94 ~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~------~Wp~ll~~L~~~~~~~~~~~~~~l~~L~~l~ee 167 (1049)
T 3m1i_C 94 NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ------NWPEFIPELIGSSSSSVNVCENNMIVLKLLSEE 167 (1049)
T ss_dssp HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc------cchHHHHHHHHHHccChHHHHHHHHHHHHHHHH
Confidence 23443332 1 3667888888888887653 21 245788999998874433445555566655422
Q ss_pred CH---------HH----HHHHHHc--CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHH-h
Q 009514 175 KE---------DM----QKLAFEV--NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVD-A 238 (533)
Q Consensus 175 ~~---------~~----~~~~~~~--~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~-~ 238 (533)
.. .- +..+.+. ..++.+.+++.+. .++.++..++.++.+....-+ ...+.+...++.+.+ +
T Consensus 168 v~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~-~~~~~~~~aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~ 244 (1049)
T 3m1i_C 168 VFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-SSSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKF 244 (1049)
T ss_dssp HHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHH
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHhhCC--HHHHhhhhHHHHHHHHh
Confidence 11 00 0111111 1123344555544 346678888888877654222 122445567776663 3
Q ss_pred cCCCCHHHHHHHHHHHHHHhhcc-ccc--c-chhhhh--cCcHHHHHH-hh-------------cCCCHHHHHHHHHHHH
Q 009514 239 LAHDSSDVRSAACMCLRSVSRSI-KNL--S-AGSFMN--ETIVIPLVR-LL-------------DDTSTAVQVAALGAIS 298 (533)
Q Consensus 239 L~~~~~~v~~~a~~~L~~ls~~~-~~~--~-~~~~~~--~~~i~~Lv~-lL-------------~~~~~~v~~~a~~aL~ 298 (533)
+ .++.++..|+.||..+.... +.. + ..++.. .+++..+.. ++ .+.+.+.....+..+.
T Consensus 245 l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~ 322 (1049)
T 3m1i_C 245 M--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLT 322 (1049)
T ss_dssp H--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHH
T ss_pred C--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHH
Confidence 3 37899999999999886441 111 0 000100 112222211 11 1234454445555554
Q ss_pred HHhcC-------CchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcc----CC-hHhHHHHHHhhcHHHHHhh
Q 009514 299 NIVVD-------FTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL----AE-DKCKEEIFMELTASLLASL 366 (533)
Q Consensus 299 nl~~~-------~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~----~~-~~~~~~i~~~~~~~~l~~l 366 (533)
.+... .+..... + ...++.++.....++..+...++.....++.. .. ...-..++.. .++.++..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~-l-~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~-Lv~~ll~~ 399 (1049)
T 3m1i_C 323 TYLARNRALLESDESLREL-L-LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQ-LRLVIIEN 399 (1049)
T ss_dssp HHHHHHHHHHHSCGGGHHH-H-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHH-HHHHHHHT
T ss_pred HHHHHHHHHHcCChhhHHH-H-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH-HHHHHHHh
Confidence 33321 1111111 1 23566666666777888888888777777651 11 0111112222 12344443
Q ss_pred hCCC-------------------Ch---hHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-CCchhHHHHH
Q 009514 367 ICDP-------------------EP---SVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-ASKAEIEIQG 423 (533)
Q Consensus 367 L~~~-------------------~~---~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~-~~~~~v~~~a 423 (533)
+.-+ +. ..+..+..+|..++.-.+. .++. .+++.+.+.+.+ ..++..++.+
T Consensus 400 m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~---~~l~---~v~~~l~~~l~~~~~~W~~~eaa 473 (1049)
T 3m1i_C 400 MVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEE---IMISKLARQIDGSEWSWHNINTL 473 (1049)
T ss_dssp CCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHH---HHHH---HHHHHHHHHHTSSSCCHHHHHHH
T ss_pred cCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHH---HHHH---HHHHHHHHHhCCCCCCHHHHHHH
Confidence 3211 00 1233344455555422211 1111 134445455543 2567889999
Q ss_pred HHHHHHhccCChhhH-HHHHHHhhHhhhhhhHHHHHHhhc-----cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHC
Q 009514 424 MYVLGNVATGKESHK-EAVMDQLLLRAENKAQSCIIKFLQ-----SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDA 497 (533)
Q Consensus 424 ~~~L~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~lv~~L~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~ 497 (533)
+++++.++.+..... ..++ ..+++.+..+.. ++++.++..++|+++.++.. ...+...+ .
T Consensus 474 l~algsia~~~~~~~e~~~l--------~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~----~~~~~~~l--~ 539 (1049)
T 3m1i_C 474 SWAIGSISGTMSEDTEKRFV--------VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRF----LKAHWNFL--R 539 (1049)
T ss_dssp HHHHHHTTTSSCHHHHHHHH--------HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHH----HHHCHHHH--H
T ss_pred HHHHHHHhcccCchhhHHHH--------HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHH----HHhHHHHH--H
Confidence 999999986543221 1222 234455555432 13445666799999988831 01111222 1
Q ss_pred CcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514 498 GIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 498 g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~ 529 (533)
.+++.|.+.+.++++.|+..|..||.++.+..
T Consensus 540 ~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~ 571 (1049)
T 3m1i_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1049)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 35677777788888999999999999997753
No 91
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.28 E-value=0.0029 Score=69.90 Aligned_cols=467 Identities=10% Similarity=0.061 Sum_probs=239.1
Q ss_pred ccchHHHHhhhc-CCCcchhHHHHHHHHHhhcC-----chhHHHHHhcCchHHHHHhhcC------ChHHHHHHHHHHHH
Q 009514 16 EENMEFLLSLLN-NESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGG------SLIQRDASLESIAT 83 (533)
Q Consensus 16 ~~~i~~L~~lL~-~~~~~v~~~a~~~l~~~~~~-----~~~~~~i~~~g~i~~L~~lL~~------~~~v~~~al~aL~~ 83 (533)
+++++.+..+|. +.++.+|..|+.+|.+.... +.....-.+...++.+.+.-.+ +.-++.+...+++.
T Consensus 47 p~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~ 126 (1023)
T 4hat_C 47 PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQ 126 (1023)
T ss_dssp TTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHH
Confidence 455666666665 45678888888888775542 2233333344444555443322 23455566677777
Q ss_pred HhcC-ChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhc----CCCc---chhhhh----H---hhhHH
Q 009514 84 IFKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNA----SPCY---LQDVGI----K---TKLIN 148 (533)
Q Consensus 84 l~~~-~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~---~~~~~~----~---~~~i~ 148 (533)
++.. .|+.+ .+.++.++.+++++ +.........|..+... .... .+...+ . ..+++
T Consensus 127 I~~~~~p~~W--------p~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ 197 (1023)
T 4hat_C 127 ILKQEWPQNW--------PEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFK 197 (1023)
T ss_dssp HHHHHTTTTC--------TTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhChhhc--------hHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 6543 23333 45678888877643 34455566666655432 1000 011111 1 12333
Q ss_pred HHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHH-HhhhcCCCCchhHHHHHHHHHHhhccc---h--
Q 009514 149 NLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY-NHLQKGSLHPRRFEGILLALADMCSKL---E-- 220 (533)
Q Consensus 149 ~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~-~~L~~~~~~~~~~~~a~~aL~~l~~~~---~-- 220 (533)
.+.+++. ..+.+...+..++......-+- ..+.+.+.++.+. .+|.+ +..+..|+.+|..+.+.. +
T Consensus 198 ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i--~~i~~~~ll~~l~~~~L~~----~~~r~~A~ecL~eIv~~~~~~~~~ 271 (1023)
T 4hat_C 198 LCFQVLEQGASSSLIVATLESLLRYLHWIPY--RYIYETNILELLSTKFMTS----PDTRAITLKCLTEVSNLKIPQDND 271 (1023)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHTHHHHS----HHHHHHHHHHHHHHHTSCCCSSCH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhCCH--HHhcchhHHHHHHHHHcCC----HHHHHHHHHHHHHHHccccCCchH
Confidence 3334443 2345556677777766543221 2345667788888 76642 568999999999988632 1
Q ss_pred hhhHhhhh--hchHHHH--------------HHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhc----CcH----H
Q 009514 221 CCRSRCLS--LQVLKLV--------------VDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNE----TIV----I 276 (533)
Q Consensus 221 ~~~~~~~~--~~~l~~l--------------~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~----~~i----~ 276 (533)
.....+.. .+.++.+ ..--.+.+.+....-+..+..+....... +... +.+ .
T Consensus 272 ~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~l----i~~~~~~~~~l~~~l~ 347 (1023)
T 4hat_C 272 LIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRAL----LESDESLRELLLNAHQ 347 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGG----GTSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHH----HhCCcchhHHHHHHHH
Confidence 12111111 0112211 11112334666666777777775542211 1111 112 2
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcC---CchhH---HHHHHhCcHHHHHHhhcCCC--------------------H-
Q 009514 277 PLVRLLDDTSTAVQVAALGAISNIVVD---FTTRR---STFIRLGGVKLLVQLSKSMD--------------------S- 329 (533)
Q Consensus 277 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~---~~~~~---~~~~~~~~i~~L~~ll~~~~--------------------~- 329 (533)
.|+.+-..++.++-..+...=..++.+ .+..+ ..+. ...++.+++-+..+. +
T Consensus 348 ~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~-~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~ 426 (1023)
T 4hat_C 348 YLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDT 426 (1023)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHH-HHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGG
T ss_pred HHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH-HHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHH
Confidence 334443567888877666543333321 00011 1111 134555555444332 0
Q ss_pred -----HHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC--CChhHHHHHHHHHHHhhcCCcch-HHHHHhhcC
Q 009514 330 -----TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD--PEPSVQEQALALVRNLVDGRINS-VEYIFAEDG 401 (533)
Q Consensus 330 -----~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~ 401 (533)
..| ..+..+.++.. + .++. ...+.+.+.+.+ .++..++.++++++.++.+..+. ....+..
T Consensus 427 ~~~f~~~R-d~L~~l~~l~~---~----~~~~-~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~-- 495 (1023)
T 4hat_C 427 IQLYKSER-EVLVYLTHLNV---I----DTEE-IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVT-- 495 (1023)
T ss_dssp HHHHHHHH-HHHHHHHHHCH---H----HHHH-HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--
T ss_pred HHHHHHHH-HHHHHHhccCH---H----HHHH-HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHH--
Confidence 112 22222222211 1 1111 112333334443 68999999999999999775432 2222221
Q ss_pred chHHHHHHHhcc----CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHH
Q 009514 402 IILDAVGRQLRI----ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL 477 (533)
Q Consensus 402 ~~~~~L~~~L~~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~ 477 (533)
+++.|..++.+ +++..++..++|+++.++.--..+ ...+ ..++..+.+.+.++++.++..||+++.
T Consensus 496 -vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~-~~~L--------~~vl~~L~~~l~~~~~~v~~~A~~al~ 565 (1023)
T 4hat_C 496 -VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFL--------RTVILKLFEFMHETHEGVQDMACDTFI 565 (1023)
T ss_dssp -HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHC-HHHH--------HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred -HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhcc-HHHH--------HHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 56667666643 133456678889999877421111 1122 245566777777788899999999999
Q ss_pred hhcCCCCCCcHHHHHHHHH------CCcHH----HHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514 478 NLTCSSSPGSSGRLVKLHD------AGIVS----HVKNMVNDPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 478 ~l~~~~~~~~~~~~~~l~~------~g~~~----~L~~ll~~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
+++.. . ...+.. ...++ .+.+....-.+.-...+..|++.+.+..+
T Consensus 566 ~l~~~----c---~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 566 KIVQK----C---KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHHH----H---THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHH----H---HHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 99951 1 112211 11233 33333333345555678888888876543
No 92
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.23 E-value=0.0011 Score=71.63 Aligned_cols=292 Identities=9% Similarity=0.058 Sum_probs=196.2
Q ss_pred HHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcC
Q 009514 205 FEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDD 284 (533)
Q Consensus 205 ~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~ 284 (533)
+..+...+..+...+.. ......+.+..+.+.+.+.... +.|+.++..++...+.......+--+.++.++..+.+
T Consensus 31 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d 106 (986)
T 2iw3_A 31 RHEIASEVASFLNGNII--EHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGN 106 (986)
T ss_dssp HHHHHHHHHHHHTSSCS--SSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcccc--ccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcC
Confidence 45566666666543211 1223347888888888877555 8999999999865322111001223567888888888
Q ss_pred CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCChHhHHHHHH--hhcHH
Q 009514 285 TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAEDKCKEEIFM--ELTAS 361 (533)
Q Consensus 285 ~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~~~~~~~i~~--~~~~~ 361 (533)
.+..|+.+|..++..+....++..- ...+|.|+..+.+. ....+..|+.++..++... + +.+.. ...+|
T Consensus 107 k~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~-~---~~~~~~~~~~~p 178 (986)
T 2iw3_A 107 KDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA-K---DQVALRMPELIP 178 (986)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS-H---HHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-H---HHHHHhccchhc
Confidence 8899999988888777765444321 35688998888755 5778999999999998644 3 22222 23578
Q ss_pred HHHhhhCCCChhHHHHHHHHHHHhhcCC-cchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHH
Q 009514 362 LLASLICDPEPSVQEQALALVRNLVDGR-INSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEA 440 (533)
Q Consensus 362 ~l~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 440 (533)
.+...+-|..++|...|..++..+|..- ...++ ..++.|++.+.+ | +-...+...|+.-+--.+ ....
T Consensus 179 ~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-------~~~~~~~~~~~~-p--~~~~~~~~~l~~~tfv~~-v~~~ 247 (986)
T 2iw3_A 179 VLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-------RFIPSLIQCIAD-P--TEVPETVHLLGATTFVAE-VTPA 247 (986)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-------GGHHHHHHHHHC-T--THHHHHHHHHTTCCCCSC-CCHH
T ss_pred chHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-------hhHHHHHHHhcC-h--hhhHHHHHHhhcCeeEee-ecch
Confidence 8888899999999999999999888431 11111 167888888876 4 335556777765443222 1122
Q ss_pred HHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc-CCCCcHHHHHH
Q 009514 441 VMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN-DPCLDVKLRVK 519 (533)
Q Consensus 441 ~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~-~~~~~v~~~a~ 519 (533)
.+ +=.+|.|.+-|+.....++..++..+.|++.-. ..+.-...+. -..+|.|.+..+ -++|++|+.+.
T Consensus 248 ~l--------~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv--~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~ 316 (986)
T 2iw3_A 248 TL--------SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLV--EDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTL 316 (986)
T ss_dssp HH--------HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC--CCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHH
T ss_pred hH--------HHHHHHHHhhhccCcchhheeeEEEEcchhhhc--CCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHH
Confidence 22 345689999999999999999999999999633 3344444443 335677777654 46899999999
Q ss_pred HHHHHHhhhcc
Q 009514 520 TALEQFNSFDD 530 (533)
Q Consensus 520 ~aL~~~~~~~~ 530 (533)
.|+..+.+.++
T Consensus 317 ~a~~~l~~~~~ 327 (986)
T 2iw3_A 317 RALKTLRRVGN 327 (986)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhhc
Confidence 99999876643
No 93
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.09 E-value=0.0012 Score=72.72 Aligned_cols=438 Identities=11% Similarity=0.100 Sum_probs=229.9
Q ss_pred ccchHHHHhhhcCC---CcchhHHHHHHHHHhhc--Cch----hHHHHHhcCchHHHHHhh--cCChHHHHHHHHHHHHH
Q 009514 16 EENMEFLLSLLNNE---SENVSGLGASIISHSCK--TSL----EQKLLFDAGVLKRLTSLL--GGSLIQRDASLESIATI 84 (533)
Q Consensus 16 ~~~i~~L~~lL~~~---~~~v~~~a~~~l~~~~~--~~~----~~~~i~~~g~i~~L~~lL--~~~~~v~~~al~aL~~l 84 (533)
+++......+|.++ ++.+|..|+.+|.+... .++ .+. -.+...++.+.+.- .++.-+|.+...++..+
T Consensus 39 p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~-~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l 117 (980)
T 3ibv_A 39 STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQ-MIRDSVWSYIKELSFLDEPAYISNAVQHLLTLL 117 (980)
T ss_dssp TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHH-HHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHH-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHH
Confidence 56788888888764 57888889998887543 122 233 33333444444411 12446888888888888
Q ss_pred hcC-ChhhhhhhccccCcccHHHHHHHHhcCCh-hhHHHHHHHHHHhhhcCCC----c-----c-----hhhhhHh---h
Q 009514 85 FKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFA-RTRLLASLCLIVIRNASPC----Y-----L-----QDVGIKT---K 145 (533)
Q Consensus 85 ~~~-~~~~~~~~~~~~~~~~i~~l~~ll~~~~~-~v~~~a~~~L~~l~~~~~~----~-----~-----~~~~~~~---~ 145 (533)
... .|..+ .+.++.++.+++++++ .......+.|..+...-.. + . ++.+... .
T Consensus 118 ~~~~~p~~W--------p~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~ 189 (980)
T 3ibv_A 118 FLQLYPSNW--------NDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSD 189 (980)
T ss_dssp HHHHTTTTC--------TTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHhCcccC--------chHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHH
Confidence 643 34443 4578888888776444 2333344444432222100 0 0 1111111 1
Q ss_pred hHHHHHHhcC-----CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccch
Q 009514 146 LINNLLELLD-----DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLE 220 (533)
Q Consensus 146 ~i~~L~~ll~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~ 220 (533)
+++....+|. .++.+...+..++......-+. ..+.+.+.++.+.++|.. +..+..|+.+|..+.....
T Consensus 190 i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~--~~i~~~~ll~~l~~~L~~----~~~r~~A~ecL~ei~~k~~ 263 (980)
T 3ibv_A 190 IVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI--NLIVNEPCMNLLYSFLQI----EELRCAACETMTEIVNKKM 263 (980)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH--HHHHCHHHHHHHHHHTTS----HHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH--HhhhcchHHHHHHHHcCC----hHHHHHHHHHHHHHHHcCC
Confidence 1333333442 2345566777777766654222 233445566777776643 6789999999998876532
Q ss_pred --hhhHhhhhhchHHHHHHhcC--CCCHHHHHHHHHHHHHHhhccccc---c---------chhhhhcCcHHHHHHhhcC
Q 009514 221 --CCRSRCLSLQVLKLVVDALA--HDSSDVRSAACMCLRSVSRSIKNL---S---------AGSFMNETIVIPLVRLLDD 284 (533)
Q Consensus 221 --~~~~~~~~~~~l~~l~~~L~--~~~~~v~~~a~~~L~~ls~~~~~~---~---------~~~~~~~~~i~~Lv~lL~~ 284 (533)
+.+..++..=.+...+..+. .++.++...-++.+..++...-.. . ...-.-.++++.++..+.+
T Consensus 264 ~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~ 343 (980)
T 3ibv_A 264 KPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSD 343 (980)
T ss_dssp CHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTC
T ss_pred ChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCC
Confidence 22222222211222222222 467777766666665543220000 0 0000113577888888888
Q ss_pred CCHHHHHHHHHHHHHHhcCC---------chhHHHHHHhCcHHHHHHhhcCC------C----------HHHHHHHHHHH
Q 009514 285 TSTAVQVAALGAISNIVVDF---------TTRRSTFIRLGGVKLLVQLSKSM------D----------STIRLNALRAL 339 (533)
Q Consensus 285 ~~~~v~~~a~~aL~nl~~~~---------~~~~~~~~~~~~i~~L~~ll~~~------~----------~~~~~~al~aL 339 (533)
++.++-..+...+..+.... ......++ ...++.+++-++.+ + .+.|.... ++
T Consensus 344 ~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l-~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l 421 (980)
T 3ibv_A 344 DYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFL-KSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IF 421 (980)
T ss_dssp SSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHH-HHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HH
T ss_pred CchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHH-HHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HH
Confidence 88888887776666554211 01111111 12344444433321 0 12444433 33
Q ss_pred HHhhccCChHh-HHHHHHhhcHHHHHhhhC---CCChhHHHHHHHHHHHhhcCCcchHHHHHhhc----CchHHHHHHHh
Q 009514 340 RNLIFLAEDKC-KEEIFMELTASLLASLIC---DPEPSVQEQALALVRNLVDGRINSVEYIFAED----GIILDAVGRQL 411 (533)
Q Consensus 340 ~~l~~~~~~~~-~~~i~~~~~~~~l~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~----~~~~~~L~~~L 411 (533)
...+...+++. -..+.+ ...+.+.+.+. +.++...+.++.+|..++++.......+ .+. ..+++.+..++
T Consensus 422 ~d~~~~l~~~~~l~~~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~-~~~~~~lp~l~~ll~~ll 499 (980)
T 3ibv_A 422 QDTINSIDSSLFSSYMYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFF-NEVDKSPTVLSQILALVT 499 (980)
T ss_dssp HHHHHHHCHHHHHHHHHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTB-CSSSCCBCHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccccccc-CcccchhHHHHHHHHHHH
Confidence 33322222211 111111 11222333332 3468899999999999998755322111 111 12566666665
Q ss_pred cc----CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHH--hhccCChhHHHHHHHHHHhhcC
Q 009514 412 RI----ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIK--FLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 412 ~~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~--~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
.+ .+.+.|+..++++++.++.-...+. ..+ ..+++.++. -+.+++..|+..|+.++.+++.
T Consensus 500 ~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~-~~l--------~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~ 566 (980)
T 3ibv_A 500 TSQVCRHPHPLVQLLYMEILVRYASFFDYES-AAI--------PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK 566 (980)
T ss_dssp HSSTTTCCCHHHHHHHHHHHHHTGGGGGTCC-TTH--------HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHHHHhcCc-hhH--------HHHHHHHhccccccCCChhHHHHHHHHHHHHHH
Confidence 52 3678999999999999886322111 112 133345555 5556788999999999999985
No 94
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=98.02 E-value=0.0066 Score=67.11 Aligned_cols=467 Identities=12% Similarity=0.086 Sum_probs=228.4
Q ss_pred chHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcC-----Chh
Q 009514 18 NMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKN-----NPE 90 (533)
Q Consensus 18 ~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~-----~~~ 90 (533)
.+..++..+-+++...+..|-..|..+-.. .++......+|.+ ++.+|-.|+..|.+.... +++
T Consensus 17 ~Le~av~~ly~p~~~~r~~A~~~L~~~q~s---------p~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L~~e 87 (1023)
T 4hat_C 17 LLDQVVSTFYQGSGVQQKQAQEILTKFQDN---------PDAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPND 87 (1023)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHC---------TTGGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGSCHH
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHcC---------ccHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHH
Confidence 444445444445444566666666555433 3355666667752 678999998888776532 122
Q ss_pred hhhhhccccCcccHHHHHHHHhcC-----ChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHH
Q 009514 91 VVSQFVGPDTGRTLSCIIEIVKDR-----FARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEAS 165 (533)
Q Consensus 91 ~~~~~~~~~~~~~i~~l~~ll~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~ 165 (533)
.+..+. ...+..+.....++ .+.++..-+.++..++...- . ..+.+.++-++++++.++.......
T Consensus 88 ~~~~Ir----~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~---p--~~Wp~~l~dL~~~l~~~~~~~~~~L 158 (1023)
T 4hat_C 88 HRIGIR----NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEW---P--QNWPEFIPELIGSSSSSVNVCENNM 158 (1023)
T ss_dssp HHHHHH----HHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHT---T--TTCTTHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhC---h--hhchHHHHHHHHHhcCCHHHHHHHH
Confidence 111111 11122222222221 23445556666777666431 0 1245788999999875544444445
Q ss_pred HHHHhhhcC---------CHH----HHHHHHHc--CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhc
Q 009514 166 FAFSSLIAE---------KED----MQKLAFEV--NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQ 230 (533)
Q Consensus 166 ~~L~~l~~~---------~~~----~~~~~~~~--~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~ 230 (533)
.+|..+.++ ... .+..+.+. ..++.+..+|.+. .++.+...++.++.....--+ -..+.+.+
T Consensus 159 ~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~-~~~~l~~~~L~~l~s~l~WI~--i~~i~~~~ 235 (1023)
T 4hat_C 159 IVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-ASSSLIVATLESLLRYLHWIP--YRYIYETN 235 (1023)
T ss_dssp HHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTTSC--THHHHSSS
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCC--HHHhcchh
Confidence 555554322 111 11111111 1233444555544 356777888888888764221 24566778
Q ss_pred hHHHHH-HhcCCCCHHHHHHHHHHHHHHhhc-c-ccc--cchhhhh--cCcHHHH-----------HHhh---cCCCHHH
Q 009514 231 VLKLVV-DALAHDSSDVRSAACMCLRSVSRS-I-KNL--SAGSFMN--ETIVIPL-----------VRLL---DDTSTAV 289 (533)
Q Consensus 231 ~l~~l~-~~L~~~~~~v~~~a~~~L~~ls~~-~-~~~--~~~~~~~--~~~i~~L-----------v~lL---~~~~~~v 289 (533)
.++.+. .++. ++.++..|+.||..+... . +.. ....+.. .+.++.+ -..+ .+.|.+.
T Consensus 236 ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~ 313 (1023)
T 4hat_C 236 ILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSF 313 (1023)
T ss_dssp HHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHH
T ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHH
Confidence 899998 8874 678999999999998652 1 110 0000000 0111111 0111 2234555
Q ss_pred HHHHHHHHHHHhcCCch------hHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhcc--CChHhH---HHHHHhh
Q 009514 290 QVAALGAISNIVVDFTT------RRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFL--AEDKCK---EEIFMEL 358 (533)
Q Consensus 290 ~~~a~~aL~nl~~~~~~------~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~--~~~~~~---~~i~~~~ 358 (533)
...-+..+..+...... ....++ ..++..++.....++.++-..++..=..+... .++..+ ..++. .
T Consensus 314 ~~~l~~l~~~~~e~~~~li~~~~~~~~~l-~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~-~ 391 (1023)
T 4hat_C 314 LQDLAMFLTTYLARNRALLESDESLRELL-LNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICS-Q 391 (1023)
T ss_dssp HHHHHHHHHHHHHHHGGGGTSCGGGHHHH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcchhHHH-HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH-H
Confidence 55555555444321111 001111 11233444444455666555544332222210 011011 01111 1
Q ss_pred cHHHHHhhhCCCC-------------------hh--HHHHHH-HHHHHhhcCCcchHHHHHhhcCchHHHHHHHhcc-CC
Q 009514 359 TASLLASLICDPE-------------------PS--VQEQAL-ALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRI-AS 415 (533)
Q Consensus 359 ~~~~l~~lL~~~~-------------------~~--v~~~a~-~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~-~~ 415 (533)
.++.+++-+.-++ .+ ..-... .+|..++.-... .++. .+++.+.+.+.+ ..
T Consensus 392 L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~---~~~~---~~~~~l~~~l~~~~~ 465 (1023)
T 4hat_C 392 LRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVI---DTEE---IMISKLARQIDGSEW 465 (1023)
T ss_dssp HHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHH---HHHH---HHHHHHHHHHSSTTC
T ss_pred HHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHH---HHHH---HHHHHHHHHhcCCCC
Confidence 2333333332111 00 000000 222222111000 0110 023344444443 25
Q ss_pred chhHHHHHHHHHHHhccCChhh-HHHHHHHhhHhhhhhhHHHHHHhhcc-----CChhHHHHHHHHHHhhcCCCCCCcHH
Q 009514 416 KAEIEIQGMYVLGNVATGKESH-KEAVMDQLLLRAENKAQSCIIKFLQS-----NDSRLRTAAVWAVLNLTCSSSPGSSG 489 (533)
Q Consensus 416 ~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~lv~~L~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~ 489 (533)
++..+++++|+++.++.+.... ....+ ..+++.|+.++.+ +...++..++|++++++.- ...
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l--------~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w----l~~ 533 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFV--------VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF----LKA 533 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHH--------HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH----HHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHH--------HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHH----Hhc
Confidence 6889999999999999765432 23333 4677888888763 3345777889999999830 011
Q ss_pred HHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514 490 RLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 490 ~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~ 529 (533)
+...+ ..++..|.+-+.++++.|++.|.+|+.++.+..
T Consensus 534 ~~~~L--~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c 571 (1023)
T 4hat_C 534 HWNFL--RTVILKLFEFMHETHEGVQDMACDTFIKIVQKC 571 (1023)
T ss_dssp CHHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 11221 123445555556677889999999999997643
No 95
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.96 E-value=0.00098 Score=62.12 Aligned_cols=191 Identities=17% Similarity=0.169 Sum_probs=134.3
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHH
Q 009514 276 IPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIF 355 (533)
Q Consensus 276 ~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~ 355 (533)
..+++-|.+.+.+.+..++..|..+..........++..+|+..|+......+...+..++.|+.++..+.+ .-.-++
T Consensus 121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~--Gm~gvv 198 (339)
T 3dad_A 121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD--GMLGVV 198 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH--HHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc--cccchh
Confidence 345666667778888999999998554667788899999999999999999999999999999999976532 222333
Q ss_pred -HhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhh--------cCchHHHHHHHhc--cCCchhHHHHHH
Q 009514 356 -MELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAE--------DGIILDAVGRQLR--IASKAEIEIQGM 424 (533)
Q Consensus 356 -~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--------~~~~~~~L~~~L~--~~~~~~v~~~a~ 424 (533)
+...+..+..++.+.+..|...|+.+|-.++..++.....+..+ +...++.++.+|. ++.+.+++..++
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 44568889999999999999999999999987765444333222 1124778888887 237899999988
Q ss_pred HHHHHhccCCh--hhHHHHHHHhhHhhhhhhHHHHHHhhccC--ChhHHHH
Q 009514 425 YVLGNVATGKE--SHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTA 471 (533)
Q Consensus 425 ~~L~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~lv~~L~~~--~~~v~~~ 471 (533)
..|..+..+.+ +.+..+.+.+- ..|+-..+.+.++.. +.+++.+
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le---~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALE---QQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHH---HTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHH---HccHHHHHHHHHhccCCCHHHHHH
Confidence 87766655433 22333333211 245545666666654 4455443
No 96
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.93 E-value=0.00074 Score=74.47 Aligned_cols=439 Identities=13% Similarity=0.089 Sum_probs=210.6
Q ss_pred hHHHHhhhc----CCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcCChh--hh
Q 009514 19 MEFLLSLLN----NESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPE--VV 92 (533)
Q Consensus 19 i~~L~~lL~----~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~~~~--~~ 92 (533)
++..+.+|. +.++.+...+..++.....-- .-..+.....++.+.++|.. +.++..|++||..+.....+ ..
T Consensus 191 ~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi-~~~~i~~~~ll~~l~~~L~~-~~~r~~A~ecL~ei~~k~~~~~~k 268 (980)
T 3ibv_A 191 VSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWI-NINLIVNEPCMNLLYSFLQI-EELRCAACETMTEIVNKKMKPLEK 268 (980)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS-CHHHHHCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhc-CHHhhhcchHHHHHHHHcCC-hHHHHHHHHHHHHHHHcCCChhhH
Confidence 344444443 366777888888888876422 23456667778888877765 68999999999998644322 11
Q ss_pred hhhccccCcccHHHHHHHHh--cCChhhHHHHHHHHHHhh------hcCCCcc------hhhhhHhhhHHHHHHhcCC-C
Q 009514 93 SQFVGPDTGRTLSCIIEIVK--DRFARTRLLASLCLIVIR------NASPCYL------QDVGIKTKLINNLLELLDD-P 157 (533)
Q Consensus 93 ~~~~~~~~~~~i~~l~~ll~--~~~~~v~~~a~~~L~~l~------~~~~~~~------~~~~~~~~~i~~L~~ll~~-~ 157 (533)
..+... -.+..++..+. ++|.+....-++.+..++ ...+... +....-.+.+|.+++.++. +
T Consensus 269 ~~li~~---l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~ 345 (980)
T 3ibv_A 269 LNLLNI---LNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDY 345 (980)
T ss_dssp HHHHHH---HHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSS
T ss_pred HHHHHH---HhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCc
Confidence 111100 00111111111 455555433222222211 1111000 0001123678888888874 3
Q ss_pred CchhhhHHHHHHhhhcC----------CHHHHHHHHHcCcHHHHHHhhhcCCC-C--c-----------hhHHHHHHHHH
Q 009514 158 GRVGDEASFAFSSLIAE----------KEDMQKLAFEVNGVDKLYNHLQKGSL-H--P-----------RRFEGILLALA 213 (533)
Q Consensus 158 ~~~~~~a~~~L~~l~~~----------~~~~~~~~~~~~~l~~L~~~L~~~~~-~--~-----------~~~~~a~~aL~ 213 (533)
.++-..+...+..+... .+..+. ++ ...++.+++.+.-++. + . +.|......+.
T Consensus 346 deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~-~l-~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d 423 (980)
T 3ibv_A 346 DETSTAVFPFLSDLLVSLRKESSSKELSASLKE-FL-KSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQD 423 (980)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHH-HH-HHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccccccccHHHHH-HH-HHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHH
Confidence 44433333333332211 111111 10 1123334433332211 0 0 12222221111
Q ss_pred HhhccchhhhHhhhhhchHHHHHHhcC---CCCHHHHHHHHHHHHHHhhccccccchhh-----hhcCcHHHHHHhhc--
Q 009514 214 DMCSKLECCRSRCLSLQVLKLVVDALA---HDSSDVRSAACMCLRSVSRSIKNLSAGSF-----MNETIVIPLVRLLD-- 283 (533)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~l~~l~~~L~---~~~~~v~~~a~~~L~~ls~~~~~~~~~~~-----~~~~~i~~Lv~lL~-- 283 (533)
.++.-.++......-.-+.+.+-+.+. +.+|..++++..+|+.++....+.... . .-...++.+..+++
T Consensus 424 ~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~-~~~~~~~lp~l~~ll~~ll~s~ 502 (980)
T 3ibv_A 424 TINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAF-FNEVDKSPTVLSQILALVTTSQ 502 (980)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGT-BCSSSCCBCHHHHHHHHHHHSS
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccc-cCcccchhHHHHHHHHHHHhCC
Confidence 111111111000000011222223342 346899999999999998875432211 0 11124455555554
Q ss_pred ---CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHh------hcCCCHHHHHHHHHHHHHhhccCChHhHHHH
Q 009514 284 ---DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQL------SKSMDSTIRLNALRALRNLIFLAEDKCKEEI 354 (533)
Q Consensus 284 ---~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~l------l~~~~~~~~~~al~aL~~l~~~~~~~~~~~i 354 (533)
++++.++..++++++..+.-.... ...++.++.. +.++++.++..|..++.+++....+.....
T Consensus 503 i~~~~hp~V~~~~~~~l~rys~~~~~~------~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~- 575 (980)
T 3ibv_A 503 VCRHPHPLVQLLYMEILVRYASFFDYE------SAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNY- 575 (980)
T ss_dssp TTTCCCHHHHHHHHHHHHHTGGGGGTC------CTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSS-
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhcC------chhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhH-
Confidence 678999999999999987643321 2344444443 345678899999999999987543211110
Q ss_pred HHhhcHHHHHhhhCC---C--C----------------hhHHHHHHHHHHHhhcCC---cchHHHHHhhc-CchHHHHHH
Q 009514 355 FMELTASLLASLICD---P--E----------------PSVQEQALALVRNLVDGR---INSVEYIFAED-GIILDAVGR 409 (533)
Q Consensus 355 ~~~~~~~~l~~lL~~---~--~----------------~~v~~~a~~~L~~l~~~~---~~~~~~i~~~~-~~~~~~L~~ 409 (533)
. ...+..+..+|.- + + .+-+.....+++.+.... ++.....++.- ..++..+.+
T Consensus 576 ~-~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~ 654 (980)
T 3ibv_A 576 T-ESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANA 654 (980)
T ss_dssp H-HHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1123334444431 1 1 123455566666665332 22222222211 002223333
Q ss_pred HhccCC---chhHH-HHHHHHHHHhccCChhh------HHHHHHHhhHhhhhhhHHHHHHhhc--cCChhHHHHHHHHHH
Q 009514 410 QLRIAS---KAEIE-IQGMYVLGNVATGKESH------KEAVMDQLLLRAENKAQSCIIKFLQ--SNDSRLRTAAVWAVL 477 (533)
Q Consensus 410 ~L~~~~---~~~v~-~~a~~~L~~l~~~~~~~------~~~~~~~~~~~~~~~~~~~lv~~L~--~~~~~v~~~a~~~L~ 477 (533)
.+.... ++..+ .+.+.+++.++.+.++. ...++ ....+.+...|. ..+..+|.+++.++.
T Consensus 655 ~l~~~~~~~~~~~~i~~~i~al~~lakgf~~~~~~~~p~~~~f--------~~~~~~il~~l~~~~~~~~irea~~~~~~ 726 (980)
T 3ibv_A 655 ALSSDLSALENIISVYCSLMAIGNFAKGFPARGSEEVAWLASF--------NKASDEIFLILDRMGFNEDIRGAVRFTSG 726 (980)
T ss_dssp HHTTSCC--CHHHHHHHHHHHHHHHHHTSCSCC-CCCSHHHHH--------HHHHHHHHHHHHHSCCSHHHHHHHHHHHH
T ss_pred HHhhcccCccHHHHHHHHHHHHHHHhccCCcccCCCCcHHHHH--------HHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 333211 11122 25677788888764321 22233 245566666676 467889999999999
Q ss_pred hhcC
Q 009514 478 NLTC 481 (533)
Q Consensus 478 ~l~~ 481 (533)
++..
T Consensus 727 r~i~ 730 (980)
T 3ibv_A 727 RIIN 730 (980)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 9885
No 97
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.93 E-value=0.0016 Score=70.39 Aligned_cols=261 Identities=13% Similarity=0.157 Sum_probs=172.2
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHhhccch---hhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccc
Q 009514 188 VDKLYNHLQKGSLHPRRFEGILLALADMCSKLE---CCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNL 264 (533)
Q Consensus 188 l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~---~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~ 264 (533)
+..+.+.+.+.. ++ +.|+.++..++.... .....++ +.+|.++....+....||.+|..++..+....+..
T Consensus 56 ~~~~~~~~~~k~-~~---~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 56 FGELAKGIKDKK-TA---ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHTSHH-HH---HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHhccC-CH---HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 445555454431 22 888888888885332 1111222 57899999999999999999999998887653321
Q ss_pred cchhhhhcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514 265 SAGSFMNETIVIPLVRLLDDT-STAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 343 (533)
Q Consensus 265 ~~~~~~~~~~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~ 343 (533)
.-..++|.|+..|.+. .+..+..|+.++..++...+... ...--.++|.+...+.+..++++.+|..++..+|
T Consensus 130 -----a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~ 203 (986)
T 2iw3_A 130 -----AIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQV-ALRMPELIPVLSETMWDTKKEVKAAATAAMTKAT 203 (986)
T ss_dssp -----GHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHG
T ss_pred -----HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHH-HHhccchhcchHhhcccCcHHHHHHHHHHHHHHH
Confidence 2256789999988754 79999999999999996543322 1222468899999999999999999999998887
Q ss_pred ccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHH
Q 009514 344 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG 423 (533)
Q Consensus 344 ~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a 423 (533)
.--++.. =+..+|.|++.+.+++. ...++..|+.-+.-..- ..-.+ ..++++|.+-|.. ....++..+
T Consensus 204 ~~~~n~d-----~~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v-~~~~l---~~~~p~l~r~l~~-~~~~~~r~~ 271 (986)
T 2iw3_A 204 ETVDNKD-----IERFIPSLIQCIADPTE--VPETVHLLGATTFVAEV-TPATL---SIMVPLLSRGLNE-RETGIKRKS 271 (986)
T ss_dssp GGCCCTT-----TGGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCC-CHHHH---HHHHHHHHHHHTS-SSHHHHHHH
T ss_pred hcCCCcc-----hhhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeee-cchhH---HHHHHHHHhhhcc-Ccchhheee
Confidence 5333210 02347888888887743 33334444333322110 00001 0155777777766 678899999
Q ss_pred HHHHHHhcc--CChhhHHHHHHHhhHhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHhhc
Q 009514 424 MYVLGNVAT--GKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 424 ~~~L~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~-~~~~v~~~a~~~L~~l~ 480 (533)
+-++.||+. .++.....++ ..++|.+.+.... .++++|.-|..++..|.
T Consensus 272 ~~~~~n~~~lv~~~~~~~~f~--------~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 272 AVIIDNMCKLVEDPQVIAPFL--------GKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHTTCCCHHHHHHHH--------TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEcchhhhcCCHHHHhhhh--------hhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 999999997 4444444444 3566666666553 68899988888887774
No 98
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.86 E-value=0.00089 Score=62.40 Aligned_cols=185 Identities=12% Similarity=0.091 Sum_probs=129.1
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhh
Q 009514 190 KLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF 269 (533)
Q Consensus 190 ~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~ 269 (533)
.+++.|.+++ .+.+..++..|..+-..+......++..+|+..|+....+.+.+.+..+..++.++=......... +
T Consensus 122 ~iiekL~~~~--~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gv-v 198 (339)
T 3dad_A 122 AILEKLYSSS--GPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGV-V 198 (339)
T ss_dssp HHHHHHHHCC--HHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHH-H
T ss_pred HHHHHHhcCC--cHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccch-h
Confidence 3455566553 455677888888855567788899999999999999999999999999999999885432221111 2
Q ss_pred hhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHh-------C---cHHHHHHhhc---CCCHHHHHHHH
Q 009514 270 MNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRL-------G---GVKLLVQLSK---SMDSTIRLNAL 336 (533)
Q Consensus 270 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~-------~---~i~~L~~ll~---~~~~~~~~~al 336 (533)
....++..++.++.+.+..|...|+..|..++...+.+...+.++ . -...++.+++ +.+.+++.+|+
T Consensus 199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 245678889999998899999999999999987655444333321 1 2668888887 67899999999
Q ss_pred HHHHHhhccCC-hHhHHHH---HHhhcH-HHHHhhhCCC--ChhHHHH
Q 009514 337 RALRNLIFLAE-DKCKEEI---FMELTA-SLLASLICDP--EPSVQEQ 377 (533)
Q Consensus 337 ~aL~~l~~~~~-~~~~~~i---~~~~~~-~~l~~lL~~~--~~~v~~~ 377 (533)
..+..+..+.+ .+.+..+ ++..++ ..+.++++.. +++.+++
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 88888776554 2323333 333444 3456666543 5555544
No 99
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.57 E-value=2.7e-05 Score=70.66 Aligned_cols=45 Identities=22% Similarity=0.395 Sum_probs=30.4
Q ss_pred HHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHH
Q 009514 456 CIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALE 523 (533)
Q Consensus 456 ~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~ 523 (533)
.+..++.++++.||..++..+ | .+.|..| +|++..|++.|..+|+
T Consensus 198 ~L~~Ll~D~d~~VR~~aa~~l---------------------~-~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 198 DLLELLHDPDWTVRLAAVEHA---------------------S-LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp GGGGGGGCSSHHHHHHHHHHS---------------------C-HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred HHHHHHcCCCHHHHHHHHHcC---------------------C-HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 455566777777777776542 1 3566667 8888899988876654
No 100
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.48 E-value=0.2 Score=55.35 Aligned_cols=460 Identities=9% Similarity=0.110 Sum_probs=226.9
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcC--ChHHHHHHHHHHHHHhcCChhhhhh
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGG--SLIQRDASLESIATIFKNNPEVVSQ 94 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~v~~~al~aL~~l~~~~~~~~~~ 94 (533)
..+..++.-+-+++...+..|-..|..+-..++ +......+|.. ++.+|--|+..|.+..... +..
T Consensus 28 ~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~---W~~ 95 (1073)
T 3gjx_A 28 NLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTR---WKI 95 (1073)
T ss_dssp HHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHT---GGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh---hhh
Confidence 345556655556677777778788877665443 33444555553 6789999998888765421 111
Q ss_pred hccccCcccHH-HHHHHHh----c-----CChhhHHHHHHHHHHhhhcC-CCcchhhhhHhhhHHHHHHhcCCCCchhhh
Q 009514 95 FVGPDTGRTLS-CIIEIVK----D-----RFARTRLLASLCLIVIRNAS-PCYLQDVGIKTKLINNLLELLDDPGRVGDE 163 (533)
Q Consensus 95 ~~~~~~~~~i~-~l~~ll~----~-----~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~ 163 (533)
+.. .....+. .++.++. + .++.++..-+.++..++... +. .+.+.++-++++++.++.....
T Consensus 96 L~~-e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~------~Wp~fi~dLv~~~~~~~~~~~~ 168 (1073)
T 3gjx_A 96 LPR-NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK------HWPTFISDIVGASRTSESLCQN 168 (1073)
T ss_dssp SCH-HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT------TCTTHHHHHHHHHHHCHHHHHH
T ss_pred CCH-HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh------hccHHHHHHHHHhCCCHHHHHH
Confidence 100 0001111 2333322 2 23455555666666666542 21 2456777777777543333344
Q ss_pred HHHHHHhhhcC---CH----------HHHHHHHHcCcHHHHH----HhhhcCCCCchhHHHHHHHHHHhhccchhhhHhh
Q 009514 164 ASFAFSSLIAE---KE----------DMQKLAFEVNGVDKLY----NHLQKGSLHPRRFEGILLALADMCSKLECCRSRC 226 (533)
Q Consensus 164 a~~~L~~l~~~---~~----------~~~~~~~~~~~l~~L~----~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~ 226 (533)
...+|..+.++ .. ..+..+.+ . .+.++ .+|.+. .++.+...++.+++....--+ -..+
T Consensus 169 ~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~-~-~~~Il~ll~~iL~~~-~~~~lv~~~L~~L~~~~sWI~--i~~i 243 (1073)
T 3gjx_A 169 NMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN-E-FSQIFQLCQFVMENS-QNAPLVHATLETLLRFLNWIP--LGYI 243 (1073)
T ss_dssp HHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH-T-CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSC--THHH
T ss_pred HHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-H-HHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHhcC--HHHh
Confidence 55555555432 10 01111222 1 33333 444444 356677778888888775322 2456
Q ss_pred hhhchHHHH-HHhcCCCCHHHHHHHHHHHHHHhhc-cccccchhhh--hcCcHHHHHHhh-------------cCCCHHH
Q 009514 227 LSLQVLKLV-VDALAHDSSDVRSAACMCLRSVSRS-IKNLSAGSFM--NETIVIPLVRLL-------------DDTSTAV 289 (533)
Q Consensus 227 ~~~~~l~~l-~~~L~~~~~~v~~~a~~~L~~ls~~-~~~~~~~~~~--~~~~i~~Lv~lL-------------~~~~~~v 289 (533)
++.+.++.+ ..+| .++.+|..|+.||..+... .++.... +. =.+++..+-.++ .+.|++.
T Consensus 244 ~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~-~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~ 320 (1073)
T 3gjx_A 244 FETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQ-FETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNF 320 (1073)
T ss_dssp HSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHH-HHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHH
T ss_pred ccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHH-HHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHH
Confidence 677888887 4666 4678999999999998653 1111111 10 011111111222 1223344
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHhC---------cHHHHHHhhcCCCHHHHHHHHHHH----HHhhccC------Ch--
Q 009514 290 QVAALGAISNIVVDFTTRRSTFIRLG---------GVKLLVQLSKSMDSTIRLNALRAL----RNLIFLA------ED-- 348 (533)
Q Consensus 290 ~~~a~~aL~nl~~~~~~~~~~~~~~~---------~i~~L~~ll~~~~~~~~~~al~aL----~~l~~~~------~~-- 348 (533)
...-+..+..+... +. .+++.+ ++..++.....++.++-..++..= ..+.... ++
T Consensus 321 ~~~l~~~f~~~~e~---~~-~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~ 396 (1073)
T 3gjx_A 321 IQNLSLFLCTFLKE---HG-QLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLL 396 (1073)
T ss_dssp HHHHHHHHHHHHHH---HH-HHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCT
T ss_pred HHHHHHHHHHHHHH---HH-HHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccc
Confidence 44444444443321 11 122211 333445555566777666555332 2222111 00
Q ss_pred --------HhHHHHHHh---hcHHHHHhhhCCCC-------------------h------hHHHHHHHHHHHhhcCCcch
Q 009514 349 --------KCKEEIFME---LTASLLASLICDPE-------------------P------SVQEQALALVRNLVDGRINS 392 (533)
Q Consensus 349 --------~~~~~i~~~---~~~~~l~~lL~~~~-------------------~------~v~~~a~~~L~~l~~~~~~~ 392 (533)
..+..+... .....++.-+.-|+ . +....++..+.++.. +
T Consensus 397 ~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~---~- 472 (1073)
T 3gjx_A 397 SGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETLVYLTHLDY---V- 472 (1073)
T ss_dssp TSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHHHHHHHHCH---H-
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHHHHHhcCCH---H-
Confidence 012111110 11222222222111 0 122223333332221 1
Q ss_pred HHHHHhhcCchHHHHHHHhccC-CchhHHHHHHHHHHHhccCChhh-HHHHHHHhhHhhhhhhHHHHHHhhccC-----C
Q 009514 393 VEYIFAEDGIILDAVGRQLRIA-SKAEIEIQGMYVLGNVATGKESH-KEAVMDQLLLRAENKAQSCIIKFLQSN-----D 465 (533)
Q Consensus 393 ~~~i~~~~~~~~~~L~~~L~~~-~~~~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~lv~~L~~~-----~ 465 (533)
.++. ++++.+.+.+.++ .++...+.++|+++.++..-... -+.++ ..+++.|+.+...+ .
T Consensus 473 --~~~~---i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~L--------p~vi~~Ll~L~e~~~~kd~k 539 (1073)
T 3gjx_A 473 --DTEI---IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFL--------VTVIKDLLGLCEQKRGKDNK 539 (1073)
T ss_dssp --HHHH---HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHH--------HHHHHHHHHHHHHSCSHHHH
T ss_pred --HHHH---HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchH--------HHHHHHHhcccccccccchh
Confidence 1111 1344454444442 45788899999999998532211 22333 35666777766543 2
Q ss_pred hhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhcc
Q 009514 466 SRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 466 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
..++...+|++++++.- ...+...+ ..++..|.+...++++.|++.|..|+..|.+-..
T Consensus 540 ~~vas~i~~vlgrY~~w----l~~h~~~L--~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~ 598 (1073)
T 3gjx_A 540 AIIASNIMYIVGQYPRF----LRAHWKFL--KTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCR 598 (1073)
T ss_dssp HHHHHHHHHHHHHCHHH----HHHCHHHH--HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhhhHHH----HHhCHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 34566677999988830 11222332 1245566666678899999999999999876543
No 101
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.013 Score=54.55 Aligned_cols=189 Identities=15% Similarity=0.129 Sum_probs=123.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhhcccccc--chhhh-hcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchh-
Q 009514 232 LKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS--AGSFM-NETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTR- 307 (533)
Q Consensus 232 l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~--~~~~~-~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~- 307 (533)
+| +-+-|.+.+|..|..|...|..+....+... ...+. -....+.+-+.+.+.+..++..++.++..++......
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~ 90 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS 90 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence 44 5678899999999999999887754322111 00011 1233455666888999999999999999887643221
Q ss_pred --H--HHHHHhCcHHHHHH-hhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHH
Q 009514 308 --R--STFIRLGGVKLLVQ-LSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALV 382 (533)
Q Consensus 308 --~--~~~~~~~~i~~L~~-ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L 382 (533)
. ....-...++.|+. .+.+....++..+..++..++....+ . ...++.+...+.+.+++++..++..|
T Consensus 91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~--~-----~~~~e~l~~~l~~Knpkv~~~~l~~l 163 (278)
T 4ffb_C 91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS--I-----TQSVELVIPFFEKKLPKLIAAAANCV 163 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS--S-----HHHHHHHGGGGGCSCHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc--H-----HHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 1 11122346677775 47788889999999888877653321 0 11246677888999999999999888
Q ss_pred HHhhcC--Cc-chHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514 383 RNLVDG--RI-NSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 383 ~~l~~~--~~-~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 432 (533)
..+... .. -.....+.. +++.+.+++.+ +++.||..|..++..+..
T Consensus 164 ~~~l~~fg~~~~~~k~~l~~---i~~~l~k~l~d-~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 164 YELMAAFGLTNVNVQTFLPE---LLKHVPQLAGH-GDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHTTTTCCHHHHHHH---HGGGHHHHHTC-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcCCchhHHHH---HHHHHHHHHhC-CcHHHHHHHHHHHHHHHH
Confidence 877632 11 011111111 44556677777 899999999998877654
No 102
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.01 Score=55.16 Aligned_cols=187 Identities=10% Similarity=0.093 Sum_probs=122.9
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCchhH--HHHH--HhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChH----
Q 009514 278 LVRLLDDTSTAVQVAALGAISNIVVDFTTRR--STFI--RLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDK---- 349 (533)
Q Consensus 278 Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~--~~~~--~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~---- 349 (533)
|-+-|.+.++..|..|...+..+........ .... -....+.+-..+.+.|..+...++.++..++......
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 6678889999999999999988775433211 0111 0133455667788999999999999999887643321
Q ss_pred hHHHHHHhhcHHHHHh-hhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHH
Q 009514 350 CKEEIFMELTASLLAS-LICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLG 428 (533)
Q Consensus 350 ~~~~i~~~~~~~~l~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~ 428 (533)
......-...++.++. .+.+....++..+..++..++..... ... +++.+...+.+ .++.++..++..|.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~-~~~-------~~e~l~~~l~~-Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS-ITQ-------SVELVIPFFEK-KLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS-SHH-------HHHHHGGGGGC-SCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc-HHH-------HHHHHHHHHhc-cCHHHHHHHHHHHH
Confidence 1112222334566654 57888999999999888777644211 011 34455555666 88999999988887
Q ss_pred Hhcc--CChh-hHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 429 NVAT--GKES-HKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 429 ~l~~--~~~~-~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
.+.. |... .....+ ..+++.+..++.++|..||.+|..++..+-.
T Consensus 165 ~~l~~fg~~~~~~k~~l--------~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTNVNVQTFL--------PELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTTCCHHHHH--------HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcCCchhHH--------HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 7654 1111 122222 2456788889999999999999999987764
No 103
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.25 E-value=0.00022 Score=64.59 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=27.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHH
Q 009514 235 VVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGA 296 (533)
Q Consensus 235 l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~a 296 (533)
+..+++++++.||..++..| + .+.|..+++++++.|+..++..
T Consensus 79 l~~L~~D~~~~VR~~aA~~L-------~------------~~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 79 LTPLIRDSDEVVRRAVAYRL-------P------------REQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGTTCSSHHHHHHHHTTS-------C------------SGGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHccCcCHHHHHHHHHHC-------C------------HHHHHHHHcCCCHHHHHHHHHh
Confidence 45566777788877776432 0 1235556677777777776664
No 104
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=97.24 E-value=0.33 Score=53.61 Aligned_cols=426 Identities=10% Similarity=0.064 Sum_probs=214.7
Q ss_pred cccchHHHHhhhcC-CCcchhHHHHHHHHHhhcC-----chhHHHHHhcCchHHHHHhhcC------ChHHHHHHHHHHH
Q 009514 15 QEENMEFLLSLLNN-ESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLGG------SLIQRDASLESIA 82 (533)
Q Consensus 15 ~~~~i~~L~~lL~~-~~~~v~~~a~~~l~~~~~~-----~~~~~~i~~~g~i~~L~~lL~~------~~~v~~~al~aL~ 82 (533)
.+++++.+..+|.+ .++.+|..|+.+|.+.... +.....-.+...+..+.+.-.+ +..++.+...+++
T Consensus 58 sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La 137 (1073)
T 3gjx_A 58 HPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILV 137 (1073)
T ss_dssp CSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHH
Confidence 35778888888874 4788899999999986642 2333333444455555554332 2456677777787
Q ss_pred HHhcC-ChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCc------------chhhhhH--hhhH
Q 009514 83 TIFKN-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCY------------LQDVGIK--TKLI 147 (533)
Q Consensus 83 ~l~~~-~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~------------~~~~~~~--~~~i 147 (533)
.++.. -|+.+ .+.++.++.++++ ++........+|..+...-... .++.+.. ..++
T Consensus 138 ~I~k~~~P~~W--------p~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il 208 (1073)
T 3gjx_A 138 QILKQEWPKHW--------PTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIF 208 (1073)
T ss_dssp HHHHHHTTTTC--------TTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhChhhc--------cHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHH
Confidence 77643 33333 3567778877764 3444556677777665431000 0111111 1223
Q ss_pred HHHHHhcC--CCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHHH-HhhhcCCCCchhHHHHHHHHHHhhccc-hhhh
Q 009514 148 NNLLELLD--DPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKLY-NHLQKGSLHPRRFEGILLALADMCSKL-ECCR 223 (533)
Q Consensus 148 ~~L~~ll~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~-~~L~~~~~~~~~~~~a~~aL~~l~~~~-~~~~ 223 (533)
+.+...+. .++.+...+..++......-+- ..+++.+.++.++ ..|. ++..+..|+.+|..+.+.+ +...
T Consensus 209 ~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i--~~i~~~~ll~~L~~~~L~----~~~~r~aA~dcL~eIv~k~~~~~~ 282 (1073)
T 3gjx_A 209 QLCQFVMENSQNAPLVHATLETLLRFLNWIPL--GYIFETKLISTLIYKFLN----VPMFRNVSLKCLTEIAGVSVSQYE 282 (1073)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT--HHHHSSSHHHHHHHHTSS----SHHHHHHHHHHHHHHHHSCSGGGH
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHhcCH--HHhccchHHHHHHHHhcC----ChHHHHHHHHHHHHHHhccccchH
Confidence 33333333 2334445566777766654321 2355666667663 5442 3678999999999987642 1221
Q ss_pred Hhhhh--hchHHHHHHhc-------------CCCCHHHHHHHHHHHHHHhhccccccchhhhhc--C-------cHHHHH
Q 009514 224 SRCLS--LQVLKLVVDAL-------------AHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNE--T-------IVIPLV 279 (533)
Q Consensus 224 ~~~~~--~~~l~~l~~~L-------------~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~--~-------~i~~Lv 279 (533)
..+.. .+.+..+..++ .+.+++....-+..+..+....-. +++. + ++..|+
T Consensus 283 ~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~-----lIe~~p~~~~~l~~~l~~ll 357 (1073)
T 3gjx_A 283 EQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQ-----LLEKRLNLREALMEALHYML 357 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHH-----HHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH-----HHhcCccchHHHHHHHHHHH
Confidence 22211 12222222222 122334445556666655443111 1111 1 223344
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhc----CC------c-----------hhHHHHHH---hCcHHHHHHhhcCCC-------
Q 009514 280 RLLDDTSTAVQVAALGAISNIVV----DF------T-----------TRRSTFIR---LGGVKLLVQLSKSMD------- 328 (533)
Q Consensus 280 ~lL~~~~~~v~~~a~~aL~nl~~----~~------~-----------~~~~~~~~---~~~i~~L~~ll~~~~------- 328 (533)
.+-..++.++...+...=..+.. .. . ..+..+.. ...+..++.-+..+.
T Consensus 358 ~~s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~ 437 (1073)
T 3gjx_A 358 LVSEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVEN 437 (1073)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEEC
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCc
Confidence 44457788887776644222221 10 0 01111110 122333333333221
Q ss_pred -------------HH-----HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC--CCChhHHHHHHHHHHHhhcC
Q 009514 329 -------------ST-----IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC--DPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 329 -------------~~-----~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~--~~~~~v~~~a~~~L~~l~~~ 388 (533)
.. .-..++..+.++ +++ .... ...+.+.+.+. ..++...+.++|+++.++..
T Consensus 438 e~ge~~re~~~d~~~~~ly~~mrd~L~~lt~l----~~~---~~~~-i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~ 509 (1073)
T 3gjx_A 438 DQGEVVREFMKDTDSINLYKNMRETLVYLTHL----DYV---DTEI-IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGA 509 (1073)
T ss_dssp SSSCEEEEECSSCHHHHHHHHHHHHHHHHHHH----CHH---HHHH-HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTS
T ss_pred ccchHHHHHHhhcchHHHHHHHHHHHHHHhcC----CHH---HHHH-HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCc
Confidence 00 111122222222 111 1111 11233333333 35699999999999999844
Q ss_pred Ccch-HHHHHhhcCchHHHHHHHhccCC-----chhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 009514 389 RINS-VEYIFAEDGIILDAVGRQLRIAS-----KAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ 462 (533)
Q Consensus 389 ~~~~-~~~i~~~~~~~~~~L~~~L~~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~ 462 (533)
-.+. -+.++.. +++.|..+..+ + +..+....+|+++.++.--..+ ..++ ...+..+.+.+.
T Consensus 510 ~~~~~E~~~Lp~---vi~~Ll~L~e~-~~~kd~k~~vas~i~~vlgrY~~wl~~h-~~~L--------~~vl~~L~~~m~ 576 (1073)
T 3gjx_A 510 MHEEDEKRFLVT---VIKDLLGLCEQ-KRGKDNKAIIASNIMYIVGQYPRFLRAH-WKFL--------KTVVNKLFEFMH 576 (1073)
T ss_dssp SCHHHHHHHHHH---HHHHHHHHHHH-SCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHH--------HHHHHHHHHHTT
T ss_pred CCcccccchHHH---HHHHHhccccc-ccccchhHHHHHHHHHHHhhhHHHHHhC-HHHH--------HHHHHHHHHHHh
Confidence 3321 2222221 66666665544 2 2335566778998876421111 1222 245567778888
Q ss_pred cCChhHHHHHHHHHHhhcC
Q 009514 463 SNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 463 ~~~~~v~~~a~~~L~~l~~ 481 (533)
++++.|+..|+.++..++.
T Consensus 577 ~~~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 577 ETHDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp CCSTTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 8999999999999999885
No 105
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.18 E-value=0.0059 Score=55.63 Aligned_cols=134 Identities=10% Similarity=0.082 Sum_probs=97.7
Q ss_pred CchhHHHHHHHHHHhhccc--hhhhHhhhh-hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHH
Q 009514 201 HPRRFEGILLALADMCSKL--ECCRSRCLS-LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIP 277 (533)
Q Consensus 201 ~~~~~~~a~~aL~~l~~~~--~~~~~~~~~-~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~ 277 (533)
++.+...++..|..+...- ..++-.-.+ .-.+|.+++-+.+....+|..+-.++..+....+ -..+.+.
T Consensus 100 N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~--------~~~v~~~ 171 (266)
T 2of3_A 100 NPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG--------PLKMTPM 171 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC--------HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC--------HHHHHHH
Confidence 4666677777776654211 111111112 2478999999999999999999999888764311 1245677
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcH---HHHHHhhcCCCHHHHHHHHHHHHHhhccCC
Q 009514 278 LVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGV---KLLVQLSKSMDSTIRLNALRALRNLIFLAE 347 (533)
Q Consensus 278 Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i---~~L~~ll~~~~~~~~~~al~aL~~l~~~~~ 347 (533)
++.-+++.++.++..++..+..+...++.. ...++ +.+..++.++|..+|..|+.++..+-...+
T Consensus 172 l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 172 LLDALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 888889999999999999999988654433 24578 999999999999999999999987755444
No 106
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.17 E-value=0.015 Score=52.92 Aligned_cols=168 Identities=12% Similarity=0.068 Sum_probs=112.3
Q ss_pred chhHHHHHHHHHHhhccchhhhHhhh-hhc-hHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc--ccccchhhhh-cCcHH
Q 009514 202 PRRFEGILLALADMCSKLECCRSRCL-SLQ-VLKLVVDALAHDSSDVRSAACMCLRSVSRSI--KNLSAGSFMN-ETIVI 276 (533)
Q Consensus 202 ~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~-~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~--~~~~~~~~~~-~~~i~ 276 (533)
..-+..++..|......++ ..+. ..+ .++.+.--+.+.|..+...+...|..+.... ...+.. -.+ .-++|
T Consensus 60 ~k~~~~ale~L~~~l~~~~---~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~-~~ea~~~lP 135 (266)
T 2of3_A 60 FKQHLAALDSLVRLADTSP---RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS-QEEVSAFVP 135 (266)
T ss_dssp HHHHHHHHHHHHHHHHHCH---HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhCh---HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch-HHHHHHHHH
Confidence 5556666666665443222 2222 112 2343333445789999999998888763211 111211 122 45689
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHH
Q 009514 277 PLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFM 356 (533)
Q Consensus 277 ~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~ 356 (533)
.|+.-+.++...+|..+-.++..+...++. ....+.++.-+++.+..+|..++..+..+....+.. .
T Consensus 136 ~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~------~ 202 (266)
T 2of3_A 136 YLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS------P 202 (266)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG------G
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC------c
Confidence 999999999999999999988777643332 124566777788999999999999999886543321 1
Q ss_pred hhcH---HHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514 357 ELTA---SLLASLICDPEPSVQEQALALVRNLV 386 (533)
Q Consensus 357 ~~~~---~~l~~lL~~~~~~v~~~a~~~L~~l~ 386 (533)
...+ +.+.+++.|+|..||..|+.++..+.
T Consensus 203 ~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 203 LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3457 99999999999999999998887654
No 107
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.16 E-value=0.015 Score=57.70 Aligned_cols=244 Identities=16% Similarity=0.150 Sum_probs=154.5
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccc--ccchhhhhcCcHHHHHHhh--c-------C-CCHHHHHHHHHHHH
Q 009514 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKN--LSAGSFMNETIVIPLVRLL--D-------D-TSTAVQVAALGAIS 298 (533)
Q Consensus 231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~--~~~~~~~~~~~i~~Lv~lL--~-------~-~~~~v~~~a~~aL~ 298 (533)
....|+.-|-++.|++|..|+.+|+.+-+..+. .+.. -......-.|+-.+ + + .-..||+.|+.+|+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~-~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQI-RVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCC-CCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceec-cccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 667778888899999999999999999765432 1111 11123333333333 1 1 13579999999999
Q ss_pred HHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHH
Q 009514 299 NIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQA 378 (533)
Q Consensus 299 nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a 378 (533)
.+ ..-+.. ..++..++..+..+..++|..++-.|..+..-.. . -.+.++.++..|.+.|.+|+..|
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~-----~--Ld~Vv~aVL~GL~D~DDDVRAVA 319 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVE-----D--KDGLCRKLVSLLSSPDEDIKLLS 319 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCC-----C--HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHH-----H--HHHHHHHHHhhcCCcccHHHHHH
Confidence 98 543332 3556666666677889999999999998822111 1 13447778888999999999999
Q ss_pred HHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCc-hhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHH
Q 009514 379 LALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASK-AEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI 457 (533)
Q Consensus 379 ~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 457 (533)
+.+|.-++ .++.+.. ++..+...|.+..+ .......+..|+.+....... .. +...+|.|
T Consensus 320 AetLiPIA--~p~~l~~-------LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~-------dp~LVPRL 380 (800)
T 3oc3_A 320 AELLCHFP--ITDSLDL-------VLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SI-------PPERLKDI 380 (800)
T ss_dssp HHHHTTSC--CSSTHHH-------HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CC-------CSGGGGGT
T ss_pred HHHhhhhc--chhhHHH-------HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---cc-------ChHHHHHH
Confidence 99999888 3443333 33444444443111 122333444555554322110 00 14677999
Q ss_pred HHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHH
Q 009514 458 IKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTAL 522 (533)
Q Consensus 458 v~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL 522 (533)
--+++++-+.||.++..++..+.. + ..-+ -.+++++-++++++++.+..+.
T Consensus 381 ~PFLRHtITSVR~AVL~TL~tfL~----~---~~LR-------LIFQNILLE~neeIl~lS~~VW 431 (800)
T 3oc3_A 381 FPCFTSPVPEVRTSILNMVKNLSE----E---SIDF-------LVAEVVLIEEKDEIREMAIKLL 431 (800)
T ss_dssp GGGGTCSSHHHHHHHHHHTTTCCC----H---HHHH-------HHHHHHHHCSCHHHHHHHHHHH
T ss_pred HhhhcCCcHHHHHHHHHHHHHHHh----h---hHHH-------HHHHHHHhCCcHHHHHHHHHHH
Confidence 999999999999999999988872 1 1111 2456666666777777655544
No 108
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.05 E-value=0.0049 Score=60.99 Aligned_cols=252 Identities=13% Similarity=0.067 Sum_probs=141.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHHHHc
Q 009514 106 CIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEV 185 (533)
Q Consensus 106 ~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 185 (533)
.++.-+-++..++|..|+..|+.+.+...... |-. ..... .-|++.+.-++-|
T Consensus 178 ~L~~DLFdp~WEiRHGAALGLREILR~hG~GA-------GR~-------~~~N~--DLAvRLLCVLALD----------- 230 (800)
T 3oc3_A 178 QISDNLLSYEWYKRHGAFLAFAAMFSEIDNGG-------DIQ-------IRVDS--KLFSKIYEILVTD----------- 230 (800)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHCC-----------CC-------CCCCT--THHHHHHHHHHHB-----------
T ss_pred HHHHHhcCcchhhhhHHHHHHHHHHHHhccCC-------cee-------ccccH--HHHHHHHHHHHhc-----------
Confidence 34444557788899999999998877542100 000 10000 2233333322211
Q ss_pred CcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhcccccc
Q 009514 186 NGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLS 265 (533)
Q Consensus 186 ~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~ 265 (533)
.+-++..+. .-..+||.|+.+|+.+ .+-+.- ..++..++..+..+.|++|..+.-.|..+ . +-..
T Consensus 231 ----RFGDYVSDq-VVAPVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL-~--DLL~ 295 (800)
T 3oc3_A 231 ----KFNDFVDDR-TVAPVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL-K--EFVE 295 (800)
T ss_dssp ----CCBBCSSSS-CBCHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT-G--GGCC
T ss_pred ----cccccccCe-eeeehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH-H--HHHH
Confidence 122222222 2344789999999888 543321 35566666666788899999988888888 1 1111
Q ss_pred chhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC-CH-HHHHHHHHHHHHhh
Q 009514 266 AGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DS-TIRLNALRALRNLI 343 (533)
Q Consensus 266 ~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~-~~~~~al~aL~~l~ 343 (533)
. -.++++.++..|++.|.+|+..|+.+|.-++ .. .... ..+..+...+.+- +- .-....+..|+.|+
T Consensus 296 -~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA-~p-~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~ 364 (800)
T 3oc3_A 296 -D---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP-IT-DSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIY 364 (800)
T ss_dssp -C---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC-CS-STHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHH
T ss_pred -H---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc-ch-hhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHH
Confidence 0 2466778888888889999999999998777 22 2111 2334444444432 11 11222334445544
Q ss_pred ccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHH
Q 009514 344 FLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQG 423 (533)
Q Consensus 344 ~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a 423 (533)
....... .....+|.|..++.++-..||..++.+|..+..+ + ++..+.+.+--.++++|+..+
T Consensus 365 s~p~~a~----~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~~--~-----------~LRLIFQNILLE~neeIl~lS 427 (800)
T 3oc3_A 365 RENPELS----IPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEE--S-----------IDFLVAEVVLIEEKDEIREMA 427 (800)
T ss_dssp HHCTTCC----CCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCCH--H-----------HHHHHHHHHHHCSCHHHHHHH
T ss_pred cCCcccc----cChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhh--h-----------HHHHHHHHHHhCCcHHHHHHH
Confidence 3221100 0125688899999999999999999988777611 1 333333322222667777666
Q ss_pred HHHH
Q 009514 424 MYVL 427 (533)
Q Consensus 424 ~~~L 427 (533)
..+-
T Consensus 428 ~~VW 431 (800)
T 3oc3_A 428 IKLL 431 (800)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 109
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.92 E-value=0.024 Score=50.09 Aligned_cols=147 Identities=18% Similarity=0.075 Sum_probs=106.3
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhc-CCchh
Q 009514 230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVR-LLDDTSTAVQVAALGAISNIVV-DFTTR 307 (533)
Q Consensus 230 ~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~-lL~~~~~~v~~~a~~aL~nl~~-~~~~~ 307 (533)
..++....+.+++..++|..|+.+|+.+ .. ....++.+-. +-.+++..|++.++.++..++. ..++
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~----------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SK----------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TT----------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-cC----------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 3466677788889999999999988776 21 1235566665 4468899999999999998874 2222
Q ss_pred HHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514 308 RSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 387 (533)
Q Consensus 308 ~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~ 387 (533)
..++.+...+++++..+|..|+..+.-.+.. +..+ .-....++.+-.+..|++..||....+.|+.++.
T Consensus 139 -------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~--~~~k--~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 139 -------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR--PYFK--ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp -------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS--TTTT--TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc--chhh--cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 2567788899999999999998776443221 1000 0012246777778889999999999999999999
Q ss_pred CCcchHHHHHhh
Q 009514 388 GRINSVEYIFAE 399 (533)
Q Consensus 388 ~~~~~~~~i~~~ 399 (533)
.+|+.+..++..
T Consensus 208 ~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 208 KFPDLVKIELKN 219 (240)
T ss_dssp TCHHHHHHHHHT
T ss_pred hCHHHHHHHHHH
Confidence 999866555543
No 110
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=95.90 E-value=0.24 Score=45.93 Aligned_cols=127 Identities=23% Similarity=0.257 Sum_probs=97.6
Q ss_pred HhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHH
Q 009514 214 DMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVA 292 (533)
Q Consensus 214 ~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~ 292 (533)
++-.++....+-+++.+++..+-..++-++.++..+.++.|...+.. ..++.. --...+|-+++.++ +++.++.++
T Consensus 268 ~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDa-ksL~~t--~L~e~LPFi~~~i~~h~eDdvvYS 344 (619)
T 3c2g_A 268 GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDA-KALAKT--PLENILPFLLRLIEIHPDDEVIYS 344 (619)
T ss_dssp HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTC-GGGGTS--CCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecch-HHHhhc--cccccchHHHHHhccCCCcceEEe
Confidence 34445556667888999999999999999999999999999999876 344432 23466788888886 899999999
Q ss_pred HHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc-CC------CH-------HHHHHHHHHHHHhh
Q 009514 293 ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SM------DS-------TIRLNALRALRNLI 343 (533)
Q Consensus 293 a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~------~~-------~~~~~al~aL~~l~ 343 (533)
..+.|+|...+..+.++..+..|+|+.|..... .+ +. .+..++++++.|+.
T Consensus 345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFL 409 (619)
T 3c2g_A 345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFL 409 (619)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhhe
Confidence 999999999888888888888999999887543 22 11 24456667777664
No 111
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=95.90 E-value=1.1 Score=49.83 Aligned_cols=169 Identities=13% Similarity=0.155 Sum_probs=110.1
Q ss_pred hHHHHHHhcCC----CCHHHHHHHHHHHHHHhhcc---ccccchhhhhcCcHHHHHH----hhcCCCHHHHHHHHHHHHH
Q 009514 231 VLKLVVDALAH----DSSDVRSAACMCLRSVSRSI---KNLSAGSFMNETIVIPLVR----LLDDTSTAVQVAALGAISN 299 (533)
Q Consensus 231 ~l~~l~~~L~~----~~~~v~~~a~~~L~~ls~~~---~~~~~~~~~~~~~i~~Lv~----lL~~~~~~v~~~a~~aL~n 299 (533)
.+..+..++++ .++.++..+.-+++.|.+.. ...| ....++.+.. .+...+.+-+..++.+|+|
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c-----~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN 466 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGN 466 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCC-----CHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhc
Confidence 46666677765 46678888888887776431 1112 1233445444 4456778889999999999
Q ss_pred HhcCCchhHHHHHHhCcHHHHHHhhcC-------CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhh--CCC
Q 009514 300 IVVDFTTRRSTFIRLGGVKLLVQLSKS-------MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLI--CDP 370 (533)
Q Consensus 300 l~~~~~~~~~~~~~~~~i~~L~~ll~~-------~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL--~~~ 370 (533)
+-. + ..++.|..++.. ....+|..|+++|.++.... |. ...+.++++. ...
T Consensus 467 ~g~--p---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~--------~v~~il~~i~~n~~e 526 (1056)
T 1lsh_A 467 AGQ--P---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PR--------KVQEIVLPIFLNVAI 526 (1056)
T ss_dssp HTC--G---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HH--------HHHHHHHHHHHCTTS
T ss_pred cCC--h---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-hH--------HHHHHHHHHhcCCCC
Confidence 974 2 346666666532 24578899999999997532 21 1234556666 456
Q ss_pred ChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChh
Q 009514 371 EPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES 436 (533)
Q Consensus 371 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~ 436 (533)
++++|..|+..|-.. +|.. ..+..+...+...++.+|.......|.+++.....
T Consensus 527 ~~EvRiaA~~~Lm~t---~P~~---------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 527 KSELRIRSCIVFFES---KPSV---------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp CHHHHHHHHHHHHHT---CCCH---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred ChHHHHHHHHHHHHH---CcCH---------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 789998888776432 2211 05666667777767888888888888888876543
No 112
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.84 E-value=0.11 Score=45.90 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=96.6
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhc-C-ChHHHHHHHHHHHHHhc-CChhhhh
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLG-G-SLIQRDASLESIATIFK-NNPEVVS 93 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~-~-~~~v~~~al~aL~~l~~-~~~~~~~ 93 (533)
..++....|.+++.+++|..|+.+|... ... ...++.+...+. . +..||+.+..+++.++. .+++
T Consensus 71 ~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe--- 138 (240)
T 3l9t_A 71 YIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKD--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK--- 138 (240)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTS--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHhc-cCc--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence 3445556666677899999999988877 211 224555555333 3 67999999999999885 3332
Q ss_pred hhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCC-chhhhHHHHHHhhh
Q 009514 94 QFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPG-RVGDEASFAFSSLI 172 (533)
Q Consensus 94 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~a~~~L~~l~ 172 (533)
..++.+....+++++.+|..|...+.-.+.. +. . ..--.-++|.|-.+..|++ -++...++.|..++
T Consensus 139 --------~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~-~--k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 139 --------KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PY-F--KENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp --------TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TT-T--TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-ch-h--hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 2466788899999999999998887654432 11 1 1112346676666666654 57888899999999
Q ss_pred cCCHHHHH
Q 009514 173 AEKEDMQK 180 (533)
Q Consensus 173 ~~~~~~~~ 180 (533)
+.+++.-.
T Consensus 207 K~~Pd~V~ 214 (240)
T 3l9t_A 207 KKFPDLVK 214 (240)
T ss_dssp TTCHHHHH
T ss_pred hhCHHHHH
Confidence 99988533
No 113
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.63 E-value=0.75 Score=42.81 Aligned_cols=178 Identities=10% Similarity=0.015 Sum_probs=105.5
Q ss_pred hhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHHHHHHHHcCcHHHH----HHhhhcCCCCchhHHHHHHHHHHhhccch
Q 009514 145 KLINNLLELLDDPGRVGDEASFAFSSLIAEKEDMQKLAFEVNGVDKL----YNHLQKGSLHPRRFEGILLALADMCSKLE 220 (533)
Q Consensus 145 ~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L----~~~L~~~~~~~~~~~~a~~aL~~l~~~~~ 220 (533)
..+..+.++++.+.+.+.-+...+.-++. ++.....+.+.+.-..+ ...+... ..+..+.-+++++.|+..+.
T Consensus 103 ~~l~~l~kil~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~-~~p~n~ml~lR~l~NlF~~~- 179 (304)
T 3ebb_A 103 QQLQILWKAINCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPK-GKPANQLLALRTFCNCFVGQ- 179 (304)
T ss_dssp HHHHHHHHHHTSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTT-SCHHHHHHHHHHHHHGGGSH-
T ss_pred HHHHHHHHHHcCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCC-CChHHHHHHHHHHHHccCCc-
Confidence 45677777776565666666666665544 44433333332222223 3333332 23556888999999998653
Q ss_pred hhhHhhhh--hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHH
Q 009514 221 CCRSRCLS--LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAI 297 (533)
Q Consensus 221 ~~~~~~~~--~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL 297 (533)
..+..+.. ..+++.+...+.+.+..+|.+++.++.|++-...+.+.. =....++..+..+++ ..|.|....++.||
T Consensus 180 ~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~-~~~~~ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 180 AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNI-EGKAQCLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 45555443 246667777777789999999999999997542211111 011223444455554 46899999999999
Q ss_pred HHHhcCCchhHHHHHHhCcHHHHHHhhcC
Q 009514 298 SNIVVDFTTRRSTFIRLGGVKLLVQLSKS 326 (533)
Q Consensus 298 ~nl~~~~~~~~~~~~~~~~i~~L~~ll~~ 326 (533)
+++.......++....-|+-..+-++...
T Consensus 259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 259 GTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 99997655444333333443333344443
No 114
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.40 E-value=1.4 Score=39.28 Aligned_cols=185 Identities=14% Similarity=0.183 Sum_probs=111.8
Q ss_pred chhHHHHHHHHHHhhccchhhhHhhh-hhchHHHHHH-------hcCCC--CHHHHHHHH---HHHHHHhhccccccchh
Q 009514 202 PRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVD-------ALAHD--SSDVRSAAC---MCLRSVSRSIKNLSAGS 268 (533)
Q Consensus 202 ~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~l~~-------~L~~~--~~~v~~~a~---~~L~~ls~~~~~~~~~~ 268 (533)
++.|+.|+..|+.--..-++..-.+. ..|.+..+++ .+..+ +...-...| ..|..++.+ +..+..
T Consensus 15 p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~- 92 (268)
T 2fv2_A 15 PETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSA- 92 (268)
T ss_dssp TTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHH-
T ss_pred chhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhH-
Confidence 45688887666643222222222222 3355555443 22222 122222233 334455655 667777
Q ss_pred hhhcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhc-CCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 009514 269 FMNETIVIPLVRLLDDT-----STAVQVAALGAISNIVV-DFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNL 342 (533)
Q Consensus 269 ~~~~~~i~~Lv~lL~~~-----~~~v~~~a~~aL~nl~~-~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l 342 (533)
|..+.+.-.|..+|+.. .+-+|-.+++.++.++. +.++....+.+.+++|..++.++.+++-.|..|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 88888888888888633 35789999999999986 4455667888999999999999999998899999999888
Q ss_pred hccCCh-------HhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514 343 IFLAED-------KCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 343 ~~~~~~-------~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~ 388 (533)
..+... ..|...+..-.-..+..+.+++++.+....+++...++++
T Consensus 173 L~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn 225 (268)
T 2fv2_A 173 LLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN 225 (268)
T ss_dssp HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred hccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence 652210 0111111111112223344566777777777766666654
No 115
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.26 E-value=0.32 Score=47.60 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=69.1
Q ss_pred hHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHH
Q 009514 231 VLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRST 310 (533)
Q Consensus 231 ~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~ 310 (533)
.+..++.+..+.+..+|.+|.+.|..++.. +. -..+...|+++|..+++.-....-++|..+....+.
T Consensus 66 Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~-------i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk---- 133 (507)
T 3u0r_A 66 AINAQLDLCEDEDVSIRRQAIKELPQFATG-EN-------LPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK---- 133 (507)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TC-------HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH----
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hh-------hhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH----
Confidence 345556666677888999999999888876 22 235677899999999988888888888877753322
Q ss_pred HHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514 311 FIRLGGVKLLVQLSKSMDSTIRLNALRALRNLI 343 (533)
Q Consensus 311 ~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~ 343 (533)
+.+..+...+..+++.+|+.++..|..=.
T Consensus 134 ----~tl~~lf~~i~~~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 134 ----GTLGGLFSQILQGEDIVRERAIKFLSTKL 162 (507)
T ss_dssp ----HHHHHHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred ----HHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 33444544444467889999998886543
No 116
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=95.23 E-value=2.5 Score=41.37 Aligned_cols=125 Identities=16% Similarity=0.170 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHH
Q 009514 241 HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLL 320 (533)
Q Consensus 241 ~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L 320 (533)
.++...+.-|+..|..+-...+.+ ....+..++.+++++|..+|..|...|-.++.+ ++. ..+...|
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l------~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i-----~kiaDvL 105 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPEL------ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG--ENL-----PRVADIL 105 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGG------HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCH-----HHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhh------HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhh-----hhHHHHH
Confidence 346888999999999988776654 345788999999999999999999999999976 332 2456788
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhc
Q 009514 321 VQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVD 387 (533)
Q Consensus 321 ~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~ 387 (533)
+++++.+++.-....-++|..+... ++ .+.+..+...+..+++.+|+.++..|+.-..
T Consensus 106 ~QlLqtdd~~E~~~V~~sL~sllk~-Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~ 163 (507)
T 3u0r_A 106 TQLLQTDDSAEFNLVNNALLSIFKM-DA--------KGTLGGLFSQILQGEDIVRERAIKFLSTKLK 163 (507)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHHHHH-CH--------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGG
T ss_pred HHHHhccchHHHHHHHHHHHHHHhc-Ch--------HHHHHHHHHHHcccchHHHHHHHHHHHHHHh
Confidence 9999988876666666666666542 22 1223344444444678899999988865543
No 117
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=95.00 E-value=2.3 Score=39.62 Aligned_cols=203 Identities=12% Similarity=0.141 Sum_probs=136.3
Q ss_pred HHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhh----Hhhhh-hchHHHHHHhcCCCCHHHHHHHHHHH
Q 009514 180 KLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCR----SRCLS-LQVLKLVVDALAHDSSDVRSAACMCL 254 (533)
Q Consensus 180 ~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~----~~~~~-~~~l~~l~~~L~~~~~~v~~~a~~~L 254 (533)
..+...+.+..|+..|..- +.+.|..+...+.++.......+ ..+.. ..++..++..-.. +++-..+-..|
T Consensus 72 ~ei~~~dll~~Li~~l~~L--~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~--~diAl~~G~mL 147 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLI--DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES--PEIALNCGIML 147 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGS--CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS--TTTHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccC--CchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhcc--chhHhHHHHHH
Confidence 3456678888888877764 46778888888887766433221 22222 2455555555443 34444444456
Q ss_pred HHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhC---cHHHHHHhhcCCCHHH
Q 009514 255 RSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLG---GVKLLVQLSKSMDSTI 331 (533)
Q Consensus 255 ~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~---~i~~L~~ll~~~~~~~ 331 (533)
+...+. +...+. +...+....+.+.+..++-++..-|..++..+...+......++..+ ....+-.++.+++--+
T Consensus 148 Recir~-e~la~~-iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVT 225 (341)
T 1upk_A 148 RECIRH-EPLAKI-ILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVT 225 (341)
T ss_dssp HHHHTS-HHHHHH-HHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHh-HHHHHH-HhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchh
Confidence 665555 333333 55666777889999999999999999999888776554444444433 3455667899999999
Q ss_pred HHHHHHHHHHhhccCChH--hHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514 332 RLNALRALRNLIFLAEDK--CKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 332 ~~~al~aL~~l~~~~~~~--~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~ 388 (533)
|+.++..|+.+.....+. ....+-+...+..+..+|++++..+|..|..++--...+
T Consensus 226 kRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN 284 (341)
T 1upk_A 226 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN 284 (341)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence 999999999987643321 123333445688889999999999999999877665544
No 118
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.47 E-value=3.6 Score=39.70 Aligned_cols=127 Identities=16% Similarity=0.164 Sum_probs=85.0
Q ss_pred cchhhhHhhhhhchHHHHHHhcC-----------CCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC
Q 009514 218 KLECCRSRCLSLQVLKLVVDALA-----------HDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS 286 (533)
Q Consensus 218 ~~~~~~~~~~~~~~l~~l~~~L~-----------~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 286 (533)
..-.+...+. .+|+..|+++|. ..+...+..+.+||+.+-......... +.....+..|+..+.++.
T Consensus 98 ~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~v-l~~~~~i~~l~~~L~s~~ 175 (383)
T 3eg5_B 98 HPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM-LETEEGILLLVRAMDPAV 175 (383)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHH-HTCSSHHHHHHHTCCTTS
T ss_pred CccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHH-HcChHHHHHHHHHhCCCc
Confidence 3446666676 677888888774 123477888889998886542222222 445678899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCc-hh-HHHHHH----------hCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccC
Q 009514 287 TAVQVAALGAISNIVVDFT-TR-RSTFIR----------LGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLA 346 (533)
Q Consensus 287 ~~v~~~a~~aL~nl~~~~~-~~-~~~~~~----------~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~ 346 (533)
+.++..+...|.-++.... .. .+.+++ ..-...++..+++ .+.+.+.+++..+..+..+.
T Consensus 176 ~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~ 248 (383)
T 3eg5_B 176 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPA 248 (383)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC
Confidence 9999999999988886543 22 223322 2334556777775 46777877777777776543
No 119
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.47 E-value=2.5 Score=37.61 Aligned_cols=127 Identities=16% Similarity=0.185 Sum_probs=81.8
Q ss_pred cchhhhHhhhhhchHHHHHHhcCC----C-------CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC
Q 009514 218 KLECCRSRCLSLQVLKLVVDALAH----D-------SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS 286 (533)
Q Consensus 218 ~~~~~~~~~~~~~~l~~l~~~L~~----~-------~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 286 (533)
.+..+.+.+ ..+|+..|+++|.. + +...+..+.+||..+.......... +...+.+..|...|.+++
T Consensus 32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~v-l~~~~~i~~l~~~L~s~~ 109 (233)
T 2f31_A 32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM-LETEEGILLLVRAMDPAV 109 (233)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHH-HTSSSHHHHHHTTCCTTS
T ss_pred CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHH-HcCcHHHHHHHHHhCCCC
Confidence 445666677 56787777777642 1 3466778888888886542222222 345677889999999999
Q ss_pred HHHHHHHHHHHHHHhcCCc-hh-HHHHHH----------hCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccC
Q 009514 287 TAVQVAALGAISNIVVDFT-TR-RSTFIR----------LGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLA 346 (533)
Q Consensus 287 ~~v~~~a~~aL~nl~~~~~-~~-~~~~~~----------~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~ 346 (533)
+.++..++..|.-++..+. .. .+.+++ ..-...+++.+++ .+.+.+.+++..+..+..+.
T Consensus 110 ~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~ 182 (233)
T 2f31_A 110 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPA 182 (233)
T ss_dssp HHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCC
Confidence 9999999988888776443 12 223322 1233446666653 45677777777777776543
No 120
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=94.20 E-value=3.6 Score=38.35 Aligned_cols=203 Identities=12% Similarity=0.049 Sum_probs=138.0
Q ss_pred hhhhhchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhh--hhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHh
Q 009514 225 RCLSLQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSF--MNETIVIPLVRLLD-DTSTAVQVAALGAISNIV 301 (533)
Q Consensus 225 ~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~--~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~ 301 (533)
.+...+.+..++..|..-+.+.|..++.+..++-+.....+.. . +-..-.+.|..++. -+++++...+-..|+..+
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p-~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLReci 151 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTP-TVEYICTQQNILFMLLKGYESPEIALNCGIMLRECI 151 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCH-HHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCc-hhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHH
Confidence 3456688999999999999999999999999887653222211 1 00111222333332 245677777777777777
Q ss_pred cCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHh---hcHHHHHhhhCCCChhHHHHH
Q 009514 302 VDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFME---LTASLLASLICDPEPSVQEQA 378 (533)
Q Consensus 302 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~---~~~~~l~~lL~~~~~~v~~~a 378 (533)
. ++.....++..+.+-.+.++++.++-++-..|..++..+.... ...-...+.. ......-+||.++++-.+.++
T Consensus 152 r-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H-k~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQS 229 (341)
T 1upk_A 152 R-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH-KLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQS 229 (341)
T ss_dssp T-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS-HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred H-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcc-HHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHH
Confidence 4 5566667888888888999999999999999999998876532 2222222222 134556779999999999999
Q ss_pred HHHHHHhhcCCcchHHHHHhh--cCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514 379 LALVRNLVDGRINSVEYIFAE--DGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 379 ~~~L~~l~~~~~~~~~~i~~~--~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 432 (533)
+.+|+.+..+.. ....+... .+.-+..++.+|.+ .+..|+-.|..+.--+.+
T Consensus 230 lKLLgelLldr~-N~~vM~~Yis~~~nLkl~M~LL~d-~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 230 LKLLGELLLDRH-NFTIMTKYISKPENLKLMMNLLRD-KSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHHSGG-GHHHHHHHTTCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCch-HHHHHHHHhCCHHHHHHHHHHhcC-chhchhhhhhhheeeeee
Confidence 999999987633 22222222 11256777788888 888999999988765554
No 121
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.93 E-value=2.4 Score=37.77 Aligned_cols=148 Identities=15% Similarity=0.171 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC-----HHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHh
Q 009514 291 VAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD-----STIRLNALRALRNLIFLAEDKCKEEIFMELTASLLAS 365 (533)
Q Consensus 291 ~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-----~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~ 365 (533)
..|...+..++. +++.+..+++++..--|..+++..+ +.+|..+++.++.+....+++.-..+++...++..++
T Consensus 74 cnaLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr 152 (268)
T 2fv2_A 74 CNALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR 152 (268)
T ss_dssp HHHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence 344444455665 5566778888887666677776543 5789999999999998888888888888889999999
Q ss_pred hhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhc------CchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHH
Q 009514 366 LICDPEPSVQEQALALVRNLVDGRINSVEYIFAED------GIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKE 439 (533)
Q Consensus 366 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~------~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 439 (533)
.++.++.--+.-|..++..+..++. ...++.... +.++..++.-+...+++...++.+++-..++. ++..++
T Consensus 153 ime~GselSKtvAtfIlqKIL~dd~-GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsd-n~rar~ 230 (268)
T 2fv2_A 153 IMESGSELSKTVATFILQKILLDDT-GLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSD-NPRARE 230 (268)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHSHH-HHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT-SHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHhccch-hHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc-CHHHHH
Confidence 9999999888889888888776532 222221110 01344444444445777778888888877775 333444
Q ss_pred HH
Q 009514 440 AV 441 (533)
Q Consensus 440 ~~ 441 (533)
.+
T Consensus 231 aL 232 (268)
T 2fv2_A 231 AL 232 (268)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 122
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=93.48 E-value=0.75 Score=51.12 Aligned_cols=136 Identities=16% Similarity=0.193 Sum_probs=83.8
Q ss_pred cHHHHHHhhcC----CCHHHHHHHHHHHHHhhccC---ChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcC
Q 009514 316 GVKLLVQLSKS----MDSTIRLNALRALRNLIFLA---EDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 316 ~i~~L~~ll~~----~~~~~~~~al~aL~~l~~~~---~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~ 388 (533)
.+..+..++++ .++.++..++-++++++... .+.|...++. -..+.+.+.+...+.+-+..++.+|+|+...
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p 470 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNAGQP 470 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhccCCh
Confidence 34555566654 45778888888888876421 1111111111 1123344555667778888899999999753
Q ss_pred CcchHHHHHhhcCchHHHHHHHhcc------CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhc
Q 009514 389 RINSVEYIFAEDGIILDAVGRQLRI------ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQ 462 (533)
Q Consensus 389 ~~~~~~~i~~~~~~~~~~L~~~L~~------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~ 462 (533)
. .++.+.+++.. +....++..|+++|.+++...+... -+.+..+..
T Consensus 471 --~-----------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v---------------~~il~~i~~ 522 (1056)
T 1lsh_A 471 --N-----------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV---------------QEIVLPIFL 522 (1056)
T ss_dssp --G-----------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH---------------HHHHHHHHH
T ss_pred --h-----------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH---------------HHHHHHHhc
Confidence 2 45566566542 1234688999999999986443211 145666664
Q ss_pred --cCChhHHHHHHHHHHhhc
Q 009514 463 --SNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 463 --~~~~~v~~~a~~~L~~l~ 480 (533)
..++++|.+|+..|..-.
T Consensus 523 n~~e~~EvRiaA~~~Lm~t~ 542 (1056)
T 1lsh_A 523 NVAIKSELRIRSCIVFFESK 542 (1056)
T ss_dssp CTTSCHHHHHHHHHHHHHTC
T ss_pred CCCCChHHHHHHHHHHHHHC
Confidence 457899999998886544
No 123
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.05 E-value=6.1 Score=38.06 Aligned_cols=121 Identities=15% Similarity=0.188 Sum_probs=86.4
Q ss_pred hhhcCcHHHHHHhhc-----------CCCHHHHHHHHHHHHHHhcCCchhHHHHHH-hCcHHHHHHhhcCCCHHHHHHHH
Q 009514 269 FMNETIVIPLVRLLD-----------DTSTAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLLVQLSKSMDSTIRLNAL 336 (533)
Q Consensus 269 ~~~~~~i~~Lv~lL~-----------~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~al 336 (533)
|. .+|+..|+.+|. ..+...+..++.||..+.. +......++. .+.+..+...+.++++.++..++
T Consensus 106 F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~al 183 (383)
T 3eg5_B 106 FG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAA 183 (383)
T ss_dssp HH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHH
T ss_pred HH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHH
Confidence 54 567777777763 2256888999999999884 4444545554 46788999999999999999999
Q ss_pred HHHHHhhccCChHh-HHHHHHhh----------cHHHHHhhhCC-CChhHHHHHHHHHHHhhcCCcc
Q 009514 337 RALRNLIFLAEDKC-KEEIFMEL----------TASLLASLICD-PEPSVQEQALALVRNLVDGRIN 391 (533)
Q Consensus 337 ~aL~~l~~~~~~~~-~~~i~~~~----------~~~~l~~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 391 (533)
..|..+|...++.. ...++++. -...++..++. .+.+.+..++..+..+..+.++
T Consensus 184 eLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~d 250 (383)
T 3eg5_B 184 KLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE 250 (383)
T ss_dssp HHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCC
Confidence 99999887654332 44444432 25667777775 6788888888888888776554
No 124
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=92.79 E-value=16 Score=41.32 Aligned_cols=270 Identities=14% Similarity=0.052 Sum_probs=138.9
Q ss_pred chHHHHhhh--cCCCcchhHHHHHHHHHhhcC-----chhHHHHHhcCchHHHHHhhc----CChHHHHHHHHHHHHHhc
Q 009514 18 NMEFLLSLL--NNESENVSGLGASIISHSCKT-----SLEQKLLFDAGVLKRLTSLLG----GSLIQRDASLESIATIFK 86 (533)
Q Consensus 18 ~i~~L~~lL--~~~~~~v~~~a~~~l~~~~~~-----~~~~~~i~~~g~i~~L~~lL~----~~~~v~~~al~aL~~l~~ 86 (533)
+...+...| .+.+..+|..|+.+|-+.... ++......+...++.+...-. .+..+|.+...+++.++.
T Consensus 46 ~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~ 125 (1204)
T 3a6p_A 46 ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIK 125 (1204)
T ss_dssp THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHH
Confidence 444444433 344677788888888775432 222222333334444443321 245788888888888764
Q ss_pred C-ChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCC--Cc---chhh----hhHh---hhHHHHHHh
Q 009514 87 N-NPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASP--CY---LQDV----GIKT---KLINNLLEL 153 (533)
Q Consensus 87 ~-~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~--~~---~~~~----~~~~---~~i~~L~~l 153 (533)
. -|+.+ .+.++.+++++++ ++..+..+..+|..+..... .. .+.. .... .+++.+.++
T Consensus 126 ~d~p~~W--------p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~i 196 (1204)
T 3a6p_A 126 REWPQHW--------PDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNT 196 (1204)
T ss_dssp HHSTTTC--------TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HhCcccc--------hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 23333 4578888888876 45567778888888764310 00 0000 0111 223333333
Q ss_pred cCCC--------------------CchhhhHHHHHHhhhcCCHHHHHHHHHcC--cHHHHHHhhhcCCCCchhHHHHHHH
Q 009514 154 LDDP--------------------GRVGDEASFAFSSLIAEKEDMQKLAFEVN--GVDKLYNHLQKGSLHPRRFEGILLA 211 (533)
Q Consensus 154 l~~~--------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~l~~L~~~L~~~~~~~~~~~~a~~a 211 (533)
+.+. ..+...+..++.+...--+. ..+.+.. .++.+..++. ++.++..|+.+
T Consensus 197 L~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~----~~~lr~~A~ec 270 (1204)
T 3a6p_A 197 LQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN----EQELQLGAAEC 270 (1204)
T ss_dssp HHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG----CTTTHHHHHHH
T ss_pred HHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC----CHHHHHHHHHH
Confidence 3210 11233344444443322111 1122322 4556665443 25689999999
Q ss_pred HHHhhccc--hhhhHhhhh---hchHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhccccc-------cchhhhh
Q 009514 212 LADMCSKL--ECCRSRCLS---LQVLKLVVDAL--------AHDSSDVRSAACMCLRSVSRSIKNL-------SAGSFMN 271 (533)
Q Consensus 212 L~~l~~~~--~~~~~~~~~---~~~l~~l~~~L--------~~~~~~v~~~a~~~L~~ls~~~~~~-------~~~~~~~ 271 (533)
|..+.... +..+..++. ...+..+++.. .+.+.++...-++.+..+....... ... -.-
T Consensus 271 L~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~-~~l 349 (1204)
T 3a6p_A 271 LLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETP-SNF 349 (1204)
T ss_dssp HHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCC-TTH
T ss_pred HHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccCh-hHH
Confidence 99998743 222222222 12234445543 1224567777777777765321100 000 011
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 009514 272 ETIVIPLVRLLDDTSTAVQVAALGAISNIVVD 303 (533)
Q Consensus 272 ~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~ 303 (533)
.++++.++.+..+++..+-..++..-..+...
T Consensus 350 ~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 350 GKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 35677788888888888888877665555543
No 125
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=91.81 E-value=7.5 Score=36.25 Aligned_cols=157 Identities=15% Similarity=0.197 Sum_probs=98.2
Q ss_pred HHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHH
Q 009514 298 SNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQ 377 (533)
Q Consensus 298 ~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~ 377 (533)
.|+..+.++...-+++.+|+..+....+.++.++.......|-......+
T Consensus 267 L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaks------------------------------ 316 (619)
T 3c2g_A 267 LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKA------------------------------ 316 (619)
T ss_dssp HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGG------------------------------
T ss_pred HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHH------------------------------
Confidence 34554566667778888889888888888888877777766665533211
Q ss_pred HHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHH
Q 009514 378 ALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCI 457 (533)
Q Consensus 378 a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 457 (533)
+|...-+ ..++.+...+.-+++++|...+.+.|+|..+......+..+. .++++.|
T Consensus 317 -------L~~t~L~----------e~LPFi~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~-------~nAI~LL 372 (619)
T 3c2g_A 317 -------LAKTPLE----------NILPFLLRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIR-------SNAIFLL 372 (619)
T ss_dssp -------GGTSCCT----------THHHHHHHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHH-------TTHHHHH
T ss_pred -------Hhhcccc----------ccchHHHHHhccCCCcceEEecchHHHHHHhcccchHHHHhc-------cCcHHHH
Confidence 2222111 056667676766688999999999999999877666666665 6788877
Q ss_pred HHhhcc-------CChhHHHHHHHHHHhhc---------CCCC-------CC--cHHHHHHHHHCCcHHHHHhhhc
Q 009514 458 IKFLQS-------NDSRLRTAAVWAVLNLT---------CSSS-------PG--SSGRLVKLHDAGIVSHVKNMVN 508 (533)
Q Consensus 458 v~~L~~-------~~~~v~~~a~~~L~~l~---------~~~~-------~~--~~~~~~~l~~~g~~~~L~~ll~ 508 (533)
-..+.. .+..-++-||..++|-. |-.. -| ..++...+.|..++..|..-|+
T Consensus 373 h~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS 448 (619)
T 3c2g_A 373 HTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLS 448 (619)
T ss_dssp HHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHH
T ss_pred HHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776532 23345555666555432 2110 02 2333445555566677776664
No 126
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=91.72 E-value=21 Score=40.34 Aligned_cols=218 Identities=15% Similarity=0.047 Sum_probs=117.8
Q ss_pred hhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhc--CCCCHHHHHHHHHHHHHHhhcc-ccccchhhhh
Q 009514 195 LQKGSLHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDAL--AHDSSDVRSAACMCLRSVSRSI-KNLSAGSFMN 271 (533)
Q Consensus 195 L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L--~~~~~~v~~~a~~~L~~ls~~~-~~~~~~~~~~ 271 (533)
+.+++.+...|..|-..|..+-... ++...+...| .+.++.+|..|+..|.+..... ...... ..
T Consensus 20 ~~~p~~~~~~r~~Ae~~L~~~~~~p----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e--~k 87 (1204)
T 3a6p_A 20 MMDPNSTQRYRLEALKFCEEFKEKC----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRL--EK 87 (1204)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHH--HH
T ss_pred HhCCCCChHHHHHHHHHHHHHHhCc----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHH--HH
Confidence 3343234556777776666653221 1233333333 3557899999999998875320 111110 11
Q ss_pred cCcHHHHHHhhc-C------CCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 009514 272 ETIVIPLVRLLD-D------TSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIF 344 (533)
Q Consensus 272 ~~~i~~Lv~lL~-~------~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~ 344 (533)
..+-..++.++. . +++.++...+.++..++....+... .+.++.+++++.+ ++..+..++.+|..++.
T Consensus 88 ~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 88 VYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW----PDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 122234555543 1 4688899999999888753211111 2567777777765 45667888888888764
Q ss_pred c------CChHhHHHH---HHhh---cHHHHHhhhCC-------------------CChhHHHHHHHHHHHhhcCCcchH
Q 009514 345 L------AEDKCKEEI---FMEL---TASLLASLICD-------------------PEPSVQEQALALVRNLVDGRINSV 393 (533)
Q Consensus 345 ~------~~~~~~~~i---~~~~---~~~~l~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~ 393 (533)
. ....-+..+ +... .+..+..++.+ .+..+...++.++.+....-+ .
T Consensus 163 ev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~ 240 (1204)
T 3a6p_A 163 DVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--M 240 (1204)
T ss_dssp HHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--H
T ss_pred HHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--H
Confidence 2 111111111 1111 12222333322 123466677777776655432 3
Q ss_pred HHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCC
Q 009514 394 EYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGK 434 (533)
Q Consensus 394 ~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~ 434 (533)
..+++..+.+++.+...+. +++++..|+.+|..+....
T Consensus 241 ~~i~~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~ 278 (1204)
T 3a6p_A 241 SHITAENCKLLEILCLLLN---EQELQLGAAECLLIAVSRK 278 (1204)
T ss_dssp HHHHTTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCC
T ss_pred HHHHhccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCC
Confidence 3444432235666665443 5788999999999998744
No 127
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=91.62 E-value=6.5 Score=34.84 Aligned_cols=147 Identities=18% Similarity=0.204 Sum_probs=89.3
Q ss_pred cCcHHHHHHhhhcC----C-----CCchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcCCCCHHHHHHHHHHHH
Q 009514 185 VNGVDKLYNHLQKG----S-----LHPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALAHDSSDVRSAACMCLR 255 (533)
Q Consensus 185 ~~~l~~L~~~L~~~----~-----~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~v~~~a~~~L~ 255 (533)
.+|+..|+++|... . .+......++.+|.++..+.......+...+.+..+...|.++++.++..+...|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 45666666655431 1 12345678899999988654444333444568999999999999999999999998
Q ss_pred HHhhccc-cc-cch---------hhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchh------HHHHHHhCcH
Q 009514 256 SVSRSIK-NL-SAG---------SFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTR------RSTFIRLGGV 317 (533)
Q Consensus 256 ~ls~~~~-~~-~~~---------~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~------~~~~~~~~~i 317 (533)
.++...+ +. ... ...+..-..++++.++ +.+.+.+.++...+-.+....++. +..+...|..
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~ 201 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH 201 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH
Confidence 8876533 11 111 0112233456788776 466788777777776666554432 2344455655
Q ss_pred HHHHHhhcCCCHHH
Q 009514 318 KLLVQLSKSMDSTI 331 (533)
Q Consensus 318 ~~L~~ll~~~~~~~ 331 (533)
+.+-.+-...++.+
T Consensus 202 ~il~~l~~~~~~~L 215 (233)
T 2f31_A 202 QVLQELREIENEDM 215 (233)
T ss_dssp HHHHHHHHCCCHHH
T ss_pred HHHHHHhccCCHHH
Confidence 55444434445443
No 128
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=90.18 E-value=14 Score=35.63 Aligned_cols=157 Identities=14% Similarity=0.144 Sum_probs=93.4
Q ss_pred cchhhhHhhhhhchHHHHHHhcCC----C-------CHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCC
Q 009514 218 KLECCRSRCLSLQVLKLVVDALAH----D-------SSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTS 286 (533)
Q Consensus 218 ~~~~~~~~~~~~~~l~~l~~~L~~----~-------~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~ 286 (533)
.+-.+...+. .+|+..|+.+|.. + +......+.+||..+.......... +...+++..|...|.+++
T Consensus 36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~v-l~~~~~i~~l~~sL~s~~ 113 (386)
T 2bnx_A 36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM-LETEEGILLLVRAMDPAV 113 (386)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHH-HHSSSHHHHHHHTCCTTS
T ss_pred CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHH-HcCcHHHHHHHHHhCCCC
Confidence 3446666664 6777777777641 1 3466788888988886542222222 345677888999999999
Q ss_pred HHHHHHHHHHHHHHhcCCc-hh-HHHHHH----------hCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCCh-H---
Q 009514 287 TAVQVAALGAISNIVVDFT-TR-RSTFIR----------LGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAED-K--- 349 (533)
Q Consensus 287 ~~v~~~a~~aL~nl~~~~~-~~-~~~~~~----------~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~-~--- 349 (533)
+.++..++..|..++..+. .. ...+++ ..-...++..+. +.+.+.+.+++..+..++.+.+. +
T Consensus 114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~ 193 (386)
T 2bnx_A 114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRV 193 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 9999999988888776443 22 222222 123344666565 45567777777777777654332 2
Q ss_pred -hHHHHHHhhcHHHHHhhhC-CCChhHHHH
Q 009514 350 -CKEEIFMELTASLLASLIC-DPEPSVQEQ 377 (533)
Q Consensus 350 -~~~~i~~~~~~~~l~~lL~-~~~~~v~~~ 377 (533)
.|..+...| +..++.-++ ..++++..+
T Consensus 194 ~LR~Ef~~~G-L~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 194 HIRSELMRLG-LHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHHHTT-HHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHCC-hHHHHHHHhccCChhHHHH
Confidence 233344444 444444444 345544433
No 129
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=89.34 E-value=13 Score=34.31 Aligned_cols=113 Identities=14% Similarity=0.126 Sum_probs=73.3
Q ss_pred HHHhhcC-CCHHHHHHHHHHHHHhhccCChHhHHHHHHh--hcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHH
Q 009514 320 LVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFME--LTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYI 396 (533)
Q Consensus 320 L~~ll~~-~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~--~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 396 (533)
+...+.+ ..+.-+.-++++++|+..+ +..++.+... ..++.+...+.+++..++..+..++.|++....+...
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~~--~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~-- 227 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFVG--QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHN-- 227 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGGS--HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccCC--chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCC--
Confidence 3344433 3466788999999999864 3455555442 3455666666778899999999999999843110000
Q ss_pred HhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChh
Q 009514 397 FAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKES 436 (533)
Q Consensus 397 ~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~ 436 (533)
.+....++..+..++....+++....++.+|+++..++.+
T Consensus 228 ~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~ 267 (304)
T 3ebb_A 228 IEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSN 267 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChh
Confidence 0111114555556666556788999999999999987654
No 130
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=89.25 E-value=8.6 Score=37.07 Aligned_cols=105 Identities=14% Similarity=0.172 Sum_probs=74.5
Q ss_pred CHHHHHHHHHHHHHHhcCCchhHHHHHH-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHh-HHHHHHhh-----
Q 009514 286 STAVQVAALGAISNIVVDFTTRRSTFIR-LGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKC-KEEIFMEL----- 358 (533)
Q Consensus 286 ~~~v~~~a~~aL~nl~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~-~~~i~~~~----- 358 (533)
+...+..++.||..+.. .......++. .+++..+...+.++++.++..++..|..+|...+++. ...+++..
T Consensus 71 d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~ 149 (386)
T 2bnx_A 71 DSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAE 149 (386)
T ss_dssp HHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHH
Confidence 46778899999998884 4444445544 4678888888988899999999999988887554333 44444331
Q ss_pred -----cHHHHHhhhC-CCChhHHHHHHHHHHHhhcCCcc
Q 009514 359 -----TASLLASLIC-DPEPSVQEQALALVRNLVDGRIN 391 (533)
Q Consensus 359 -----~~~~l~~lL~-~~~~~v~~~a~~~L~~l~~~~~~ 391 (533)
-...++..+. +.+.+.+..++..+..+..+.++
T Consensus 150 ~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~d 188 (386)
T 2bnx_A 150 MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE 188 (386)
T ss_dssp HHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSC
T ss_pred hCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCC
Confidence 2344666665 56778888888888888877654
No 131
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=87.27 E-value=42 Score=37.62 Aligned_cols=260 Identities=14% Similarity=0.109 Sum_probs=136.4
Q ss_pred HHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhHHHHHHhhhcCCHHH---HHHHHH
Q 009514 108 IEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEASFAFSSLIAEKEDM---QKLAFE 184 (533)
Q Consensus 108 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~ 184 (533)
++++.-.+..+|......|-.+..+.. ...+...|.+++.+++.+......+|++|--+.+.. +..+.+
T Consensus 163 ~~vl~vap~~lQ~diI~sLPeIl~ds~--------H~~v~~~L~~lL~~~~~L~~~iLdaLs~L~Ls~~~l~~vr~~vl~ 234 (1323)
T 3s4w_B 163 MQLISVAPVNLQHDFITSLPEILGDSQ--------HANVGKELGELLVQNTSLTVPILDVFSSLRLDPNFLSKIRQLVMG 234 (1323)
T ss_dssp HHHHHHSCTTTHHHHHHTHHHHSCGGG--------HHHHHHHHHHHHHHCSTTHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHhHHHhcchh--------hHHHHHHHHHHHhcCcchHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 333433333445544444444444321 224677788888877778888889999986554432 222222
Q ss_pred ------cCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhcc-c---hh-h---hHhh----------hhh----chHHHHH
Q 009514 185 ------VNGVDKLYNHLQKGSLHPRRFEGILLALADMCSK-L---EC-C---RSRC----------LSL----QVLKLVV 236 (533)
Q Consensus 185 ------~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~-~---~~-~---~~~~----------~~~----~~l~~l~ 236 (533)
...+|.+++.|-....... ...++..|..--.. . +. . ...+ .+. +....++
T Consensus 235 ~L~s~~~e~LP~lIkFLL~s~t~~~-~~evI~~LR~~L~~~~~~~p~~~~~s~~~~k~~~~~~~~~~~~~s~~~~~~lil 313 (1323)
T 3s4w_B 235 KLSSVRLEDFPVIVKFLLHSVTDTT-SLEVIAELRENLNVQQFILPSRIQASQSKLKSKGLASSSGNQENSDKDCIVLVF 313 (1323)
T ss_dssp STTSSCTTHHHHHHHHHHHSCSSTT-HHHHHHHHHHHHHCC----------------------------CHHHHHHHHHH
T ss_pred HhccCChhhhHHHHHHHHHhCCHhh-HHHHHHHHHHHcCccccccchhhhhhhhhhhccccccCCccccccccchHHHHH
Confidence 2448999997765432222 22233333321100 0 00 0 0000 000 1122244
Q ss_pred HhcCC---CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCCchhHHHHH
Q 009514 237 DALAH---DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRL-LDDTSTAVQVAALGAISNIVVDFTTRRSTFI 312 (533)
Q Consensus 237 ~~L~~---~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~l-L~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~ 312 (533)
+.++. .+..+..++.+.+.+.... .+...+..++=+ +-+.+...+..+-..+.+.+... .....++
T Consensus 314 d~lks~l~~~k~i~eAwlK~I~~~~~~---------~~hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G-~it~~ll 383 (1323)
T 3s4w_B 314 DVIKSAIRYEKTISEAWFKAIERIESA---------AEHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSD-CIQEQLL 383 (1323)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHGGGS---------TTCCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTT-CSCHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHhCCCcc---------cccchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcC-CchHHHH
Confidence 44443 2667777888888776443 122334443322 23445566777778887766532 1111111
Q ss_pred ----------HhCcHHHHHH----hhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHH
Q 009514 313 ----------RLGGVKLLVQ----LSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQA 378 (533)
Q Consensus 313 ----------~~~~i~~L~~----ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a 378 (533)
-....+.++. ++++.++.++..+...-..+...-+..+++.++.. |+..+.+++..-...|
T Consensus 384 ~~~f~~h~~vL~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~~qqeVl~~-----Lv~hi~sg~~~eVd~A 458 (1323)
T 3s4w_B 384 DSAFSTHYLVLKDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGA-----LVTHVCSGTEAEVDTA 458 (1323)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHHHHHHHHHH-----HHHHHHHCCHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHH-----HHhhhcCCCcHHHHHH
Confidence 1244455543 46778899999888877777665555567666653 3343334444445558
Q ss_pred HHHHHHhhcCCcc
Q 009514 379 LALVRNLVDGRIN 391 (533)
Q Consensus 379 ~~~L~~l~~~~~~ 391 (533)
+.+|..++..+++
T Consensus 459 LdvL~~L~~~~~~ 471 (1323)
T 3s4w_B 459 LDVLLELIVLNAS 471 (1323)
T ss_dssp HHHHHHHHHHCHH
T ss_pred HHHHHHHHhcCHH
Confidence 8888888876554
No 132
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=85.99 E-value=25 Score=33.66 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=101.3
Q ss_pred hchHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhH
Q 009514 229 LQVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRR 308 (533)
Q Consensus 229 ~~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~ 308 (533)
.++++.++++-.+.+.++|...+..|...+..... .-...++.|..+|+++++.+...+..+.+++= +...
T Consensus 62 ~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e------l~~~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f 132 (386)
T 3o2t_A 62 DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE------LLLKLIANLNMLLRDENVNVVKKAILTMTQLY---KVAL 132 (386)
T ss_dssp GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHH
Confidence 46789999998999999999999999887653211 12456788889999999999988887776642 1111
Q ss_pred HHHHHh---------------CcHHHHHHhhcCCCHHHHHHHHHHHHHhhc--c---CChH-------------------
Q 009514 309 STFIRL---------------GGVKLLVQLSKSMDSTIRLNALRALRNLIF--L---AEDK------------------- 349 (533)
Q Consensus 309 ~~~~~~---------------~~i~~L~~ll~~~~~~~~~~al~aL~~l~~--~---~~~~------------------- 349 (533)
+.+... ..-..++.+..+.+..+|..++..+..+.. . .+++
T Consensus 133 ~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp 212 (386)
T 3o2t_A 133 QWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHP 212 (386)
T ss_dssp HHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCS
T ss_pred HHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCC
Confidence 122211 122345566777889999999988887541 1 0100
Q ss_pred -h-HHHHHH--hhcHHHHHhhhCCC--ChhHHHHHHHHHHHhhcCCcchHHHHH
Q 009514 350 -C-KEEIFM--ELTASLLASLICDP--EPSVQEQALALVRNLVDGRINSVEYIF 397 (533)
Q Consensus 350 -~-~~~i~~--~~~~~~l~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~ 397 (533)
. ...+.+ .+.++.|++++.++ +.-....++..|..++...|.....++
T Consensus 213 ~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl 266 (386)
T 3o2t_A 213 YIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVI 266 (386)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHH
Confidence 0 011221 23467777777653 344555677777787777665444433
No 133
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=84.47 E-value=22 Score=31.84 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=73.7
Q ss_pred chHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHH--------h
Q 009514 230 QVLKLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDTSTAVQVAALGAISNI--------V 301 (533)
Q Consensus 230 ~~l~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl--------~ 301 (533)
++++.++++-.+.+.++|...+..+...+.... ......++.|..+++++++.+...+..+..++ +
T Consensus 53 ~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~------~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~ 126 (257)
T 3gs3_A 53 EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV------ELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLC 126 (257)
T ss_dssp HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777778889999999999988875422 23456788899999999999998888776554 3
Q ss_pred cCCch---hHHHHHH-hCcHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 009514 302 VDFTT---RRSTFIR-LGGVKLLVQLSKSMDSTIRLNALRALRNLI 343 (533)
Q Consensus 302 ~~~~~---~~~~~~~-~~~i~~L~~ll~~~~~~~~~~al~aL~~l~ 343 (533)
..... ..+..-. ...=..++.+..+.+..+|..++..+..+.
T Consensus 127 ~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 127 SLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 22210 0101000 122234556677888999999998888754
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=83.11 E-value=3.8 Score=33.44 Aligned_cols=71 Identities=10% Similarity=0.109 Sum_probs=53.6
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc------CChhHHHHHHHHH
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS------NDSRLRTAAVWAV 476 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~------~~~~v~~~a~~~L 476 (533)
++..+.+.|.+ +++.++..|+.+|-.+...+......-+. ...++..|++++.. .+..|+..+...|
T Consensus 49 a~ral~krl~~-~n~~v~l~AL~LLe~cvkNCG~~fh~eia------s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 121 (149)
T 3g2s_A 49 ATRLLAHKIQS-PQEWEAIQALTVLETCMKSCGKRFHDEVG------KFRFLNELIKVVSPKYLGSRTSEKVKNKILELL 121 (149)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCCHHHHHHHT------SHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHhcCHHHHHHHh------hHHHHHHHHHHHcccccCCCCCHHHHHHHHHHH
Confidence 67778888886 89999999999998887755444443333 26788889998863 5678999998888
Q ss_pred Hhhc
Q 009514 477 LNLT 480 (533)
Q Consensus 477 ~~l~ 480 (533)
...+
T Consensus 122 ~~W~ 125 (149)
T 3g2s_A 122 YSWT 125 (149)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7666
No 135
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=79.20 E-value=9.8 Score=30.92 Aligned_cols=71 Identities=8% Similarity=0.085 Sum_probs=53.6
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc------CChhHHHHHHHHH
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS------NDSRLRTAAVWAV 476 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~------~~~~v~~~a~~~L 476 (533)
++..+.+.|.+ +++.++..|+.+|-.+...+......-+. ...++..|+.++.. .+..|+..+...|
T Consensus 39 a~rai~krl~~-~n~~vql~AL~LLe~~vkNCG~~fh~eva------s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 111 (148)
T 1mhq_A 39 APWLLAHKIQS-PQEKEALYALTVLEMCMNHCGEKFHSEVA------KFRFLNELIKVLSPKYLGSWATGKVKGRVIEIL 111 (148)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHHT------SHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHHh------hHHHHHHHHHHHccccCCCCCCHHHHHHHHHHH
Confidence 67778888887 89999999999998888754434443333 26788889998864 3678999988888
Q ss_pred Hhhc
Q 009514 477 LNLT 480 (533)
Q Consensus 477 ~~l~ 480 (533)
..-+
T Consensus 112 ~~W~ 115 (148)
T 1mhq_A 112 FSWT 115 (148)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 136
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=79.19 E-value=32 Score=30.00 Aligned_cols=140 Identities=11% Similarity=-0.087 Sum_probs=90.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCCchhHHHH
Q 009514 233 KLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAALGAISNIVVDFTTRRSTF 311 (533)
Q Consensus 233 ~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~~aL~nl~~~~~~~~~~~ 311 (533)
..+.++..++..+.+..|+..+....... ....++.+-.++. -++..+....+.+++.+....+.
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~---------~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~----- 123 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRF---------SLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLT----- 123 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGC---------CHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGG-----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhC---------CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChH-----
Confidence 45566777788889999988887653210 1112222233343 46788888777777766543322
Q ss_pred HHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcc
Q 009514 312 IRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRIN 391 (533)
Q Consensus 312 ~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 391 (533)
...+.+...+.+++..+|+.|+..+-......++ . ...+.+-.++.+++.-|+....|+|+.++..+++
T Consensus 124 ---~~~~~i~~W~~s~~~w~rR~ai~~~l~~~~~~~~---~-----~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~ 192 (220)
T 2b6c_A 124 ---ELPTIFALFYGAENFWNRRVALNLQLMLKEKTNQ---D-----LLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQ 192 (220)
T ss_dssp ---GHHHHHHHHTTCSSHHHHHHHHHTTTTCGGGCCH---H-----HHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHH
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCH---H-----HHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHH
Confidence 2345677889999999999887655332222221 1 1244555578899999999999999999999887
Q ss_pred hHHHHH
Q 009514 392 SVEYIF 397 (533)
Q Consensus 392 ~~~~i~ 397 (533)
.+...+
T Consensus 193 ~v~~fl 198 (220)
T 2b6c_A 193 WVEELM 198 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
No 137
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=79.02 E-value=7.6 Score=31.57 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=57.9
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC------CChhHHHHHHHHHHHhh
Q 009514 315 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD------PEPSVQEQALALVRNLV 386 (533)
Q Consensus 315 ~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~------~~~~v~~~a~~~L~~l~ 386 (533)
.++..|.+-+++.++.++..|+..|-.+..+.+...+..+.....++.|++++.. .+..|+..++.++..-+
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 4566777778889999999999999999888777777777777778888888864 47899999988877655
No 138
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=77.89 E-value=27 Score=30.75 Aligned_cols=142 Identities=11% Similarity=0.030 Sum_probs=88.6
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc-CCCHHHHHHHH-HHHHHHhcCCchhHHH
Q 009514 233 KLVVDALAHDSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD-DTSTAVQVAAL-GAISNIVVDFTTRRST 310 (533)
Q Consensus 233 ~~l~~~L~~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~-~~~~~v~~~a~-~aL~nl~~~~~~~~~~ 310 (533)
..+.++.+++..+.|..|+..+...... .....++.+-.++. .++.++....+ .+++.+....+.
T Consensus 64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~---------~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~---- 130 (232)
T 3jxy_A 64 IIIRELWDLPEREFQAAALDIMQKYKKH---------INETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE---- 130 (232)
T ss_dssp HHHHHHHTSSBHHHHHHHHHHHHHTGGG---------CCGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG----
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH----
Confidence 4556677778888888888887543211 11223334444443 46777776553 455555433221
Q ss_pred HHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCc
Q 009514 311 FIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRI 390 (533)
Q Consensus 311 ~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~ 390 (533)
...+.+...+.+++..+|+.|+..+.......+++ ...+.+..++.+++.-|+....|+|+.++..++
T Consensus 131 ----~~~~~l~~W~~s~~~w~rR~ai~~~l~~~~~~d~~--------~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p 198 (232)
T 3jxy_A 131 ----LISAYIPKWIASDNIWLQRAAILFQLKYKQKMDEE--------LLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNP 198 (232)
T ss_dssp ----GGGGTHHHHHHSSCHHHHHHHHHTTTTCGGGCCHH--------HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCH
T ss_pred ----HHHHHHHHHhcCCchHHHHHHHHHHHHHHhCCCHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCH
Confidence 23456678888999999998876553222222221 123455567889999999999999999999988
Q ss_pred chHHHHHhh
Q 009514 391 NSVEYIFAE 399 (533)
Q Consensus 391 ~~~~~i~~~ 399 (533)
+.+...++.
T Consensus 199 ~~v~~fl~~ 207 (232)
T 3jxy_A 199 DVVWEYVQN 207 (232)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 765554443
No 139
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=77.04 E-value=5.8 Score=31.95 Aligned_cols=72 Identities=17% Similarity=0.164 Sum_probs=54.8
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhh
Q 009514 315 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLV 386 (533)
Q Consensus 315 ~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~ 386 (533)
.++..+.+-+++.++.++..|+..|-.+..+.+......+.....++.+.+++...++.|+..++.++..-.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 356677777788899999999998888887777666666655556667777777778899999888877654
No 140
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=77.00 E-value=8.9 Score=31.18 Aligned_cols=72 Identities=15% Similarity=0.124 Sum_probs=57.5
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCC------CChhHHHHHHHHHHHhh
Q 009514 315 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICD------PEPSVQEQALALVRNLV 386 (533)
Q Consensus 315 ~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~------~~~~v~~~a~~~L~~l~ 386 (533)
.++..|.+-+++.++.++..|+..|-.+..+.+...+..+.....++.|++++.. .+++|+..++.++..-.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 3566777778889999999999999988887777677777776777888888863 57889999988887665
No 141
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=76.58 E-value=7.5 Score=32.23 Aligned_cols=94 Identities=13% Similarity=0.084 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHH
Q 009514 284 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 363 (533)
Q Consensus 284 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l 363 (533)
++|+..-...|..+..= .... ..++..|.+-+++.++.++..|+..|-.+..+.+...+..+.....++.+
T Consensus 30 ~~Dw~~~leicD~I~~~---~~~~------keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el 100 (163)
T 1x5b_A 30 TEDWSLIMDICDKVGST---PNGA------KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEV 100 (163)
T ss_dssp SCCHHHHHHHHHHHHHS---SSHH------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCC---CccH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 45776666666655431 1111 24566777778889999999999999988887776667666666667777
Q ss_pred HhhhCC-CChhHHHHHHHHHHHhh
Q 009514 364 ASLICD-PEPSVQEQALALVRNLV 386 (533)
Q Consensus 364 ~~lL~~-~~~~v~~~a~~~L~~l~ 386 (533)
++++.. .++.|+..++.++..-.
T Consensus 101 ~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 101 RAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHH
Confidence 787764 67889999888776554
No 142
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=76.45 E-value=56 Score=31.38 Aligned_cols=234 Identities=16% Similarity=0.100 Sum_probs=125.0
Q ss_pred hhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhhccCC
Q 009514 269 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD-STIRLNALRALRNLIFLAE 347 (533)
Q Consensus 269 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~al~aL~~l~~~~~ 347 (533)
.++..++..|+.+++++|++-|......|.++-..+...+..+. ...-..+.+...... ..-....++.++.+..+-.
T Consensus 125 ~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Ir-k~innif~~fiye~e~~~GIaeLLeilgsIinGfa 203 (403)
T 3fga_B 125 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 203 (403)
T ss_dssp TSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCC
T ss_pred hcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccC
Confidence 46677888999999999999999999999888765655554443 333345555544322 2223345566666655432
Q ss_pred hHhHHHHHHhhcHHHHHhhhCCCChhHH-HHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHH-
Q 009514 348 DKCKEEIFMELTASLLASLICDPEPSVQ-EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMY- 425 (533)
Q Consensus 348 ~~~~~~i~~~~~~~~l~~lL~~~~~~v~-~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~- 425 (533)
.-.|+. ........|+.|.+.+....- .+-..++......++.....+ +.. +|..=|......+.++
T Consensus 204 ~PLkee-hk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-------i~~---LLk~WP~tns~KevlFL 272 (403)
T 3fga_B 204 LPLKEE-HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-------VMA---LLKYWPKTHSPKEVMFL 272 (403)
T ss_dssp SSCCHH-HHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-------HHH---HHHTCCSSCHHHHHHHH
T ss_pred CCchHH-HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-------HHH---HHHhCCCCCcHHHHHHH
Confidence 112221 111223456666665443222 233333444444444332222 222 2332233333333332
Q ss_pred -HHHHhcc-CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCC---c-
Q 009514 426 -VLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG---I- 499 (533)
Q Consensus 426 -~L~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g---~- 499 (533)
-+..+.. -.+...+.+. ..+...+...+.|++..|-+.|.....| ++...+.... +
T Consensus 273 ~Ele~iLe~~~~~~f~~i~--------~~lf~~la~ci~S~hfqVAErAL~~wnN----------e~i~~li~~n~~~Il 334 (403)
T 3fga_B 273 NELEEILDVIEPSEFVKIM--------EPLFRQLAKCVSSPHFQVAERALYYWNN----------EYIMSLISDNAAKIL 334 (403)
T ss_dssp HHHHHHHTTCCHHHHHHHH--------HHHHHHHHHHHTCSCHHHHHHHHGGGGC----------HHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHH--------HHHHHHHHHHHCCCCHHHHHHHHHHhcc----------HHHHHHHHHhHHHHH
Confidence 3333433 2233444444 3466788899999999998887643311 2222222221 2
Q ss_pred ---HHHHHhhhcC-CCCcHHHHHHHHHHHHhhhcccC
Q 009514 500 ---VSHVKNMVND-PCLDVKLRVKTALEQFNSFDDSL 532 (533)
Q Consensus 500 ---~~~L~~ll~~-~~~~v~~~a~~aL~~~~~~~~~~ 532 (533)
.+.|.+..+. =+..++..+..+|.-+.+..+.+
T Consensus 335 Pii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~l 371 (403)
T 3fga_B 335 PIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKL 371 (403)
T ss_dssp HHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHH
Confidence 3444443332 36788888999998887766554
No 143
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=76.33 E-value=55 Score=31.26 Aligned_cols=128 Identities=13% Similarity=0.215 Sum_probs=77.9
Q ss_pred HHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHh
Q 009514 332 RLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQL 411 (533)
Q Consensus 332 ~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L 411 (533)
+...+.-+..++.+.+|. ++ ...++.++.+-.+++.++|.+++.+|...+....+.... +++.|..+|
T Consensus 42 Kl~~L~q~~EL~l~~dps----Ll-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~-------~l~~L~~LL 109 (386)
T 3o2t_A 42 KITVLKQVQELIINKDPT----LL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLK-------LIANLNMLL 109 (386)
T ss_dssp HHHHHHHHHHHHHTTCGG----GG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHH----HH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 444444455544333332 11 235777888888888999999999888887654433211 556666667
Q ss_pred ccCCchhHHHHHHHHHHHhc--------cCCh-----hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHh
Q 009514 412 RIASKAEIEIQGMYVLGNVA--------TGKE-----SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLN 478 (533)
Q Consensus 412 ~~~~~~~v~~~a~~~L~~l~--------~~~~-----~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~ 478 (533)
.+ .++.|...++.+.+++- .+.. +.....+ ..+-..++.++.+.+..+|..|..++..
T Consensus 110 ~d-~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m--------~~lK~~Il~~~ds~n~GVrl~aiKFle~ 180 (386)
T 3o2t_A 110 RD-ENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMV--------SAMAGDIILLLDSDNDGIRTHAIKFVEG 180 (386)
T ss_dssp TC-SSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHH--------HHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred cC-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHH--------HHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 65 67777776666555543 1111 0111111 2345567777888899999999988877
Q ss_pred hc
Q 009514 479 LT 480 (533)
Q Consensus 479 l~ 480 (533)
+.
T Consensus 181 VI 182 (386)
T 3o2t_A 181 LI 182 (386)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 144
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=75.24 E-value=6.4 Score=31.69 Aligned_cols=71 Identities=11% Similarity=0.130 Sum_probs=52.2
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhc
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~ 480 (533)
++..+.+.|.+ .++.++..|+..|-.+...+.......+. ...++..++.+++..++.|+..+...+...+
T Consensus 43 a~rai~Krl~~-~n~~~ql~AL~LLe~~vkNcG~~f~~eva------s~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNH-KDPHVAMQALTLLGACVSNCGKIFHLEVC------SRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSCHHHHHHHS------SHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CChHHHHHHHHHHHHHHHhcCHHHHHHHh------hHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 66777788887 88999999998888777644333333332 2567777888887788899999988887655
No 145
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=73.46 E-value=13 Score=30.81 Aligned_cols=71 Identities=7% Similarity=0.101 Sum_probs=51.9
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHhhc
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~-~~~~v~~~a~~~L~~l~ 480 (533)
++..+.+.|.+ .++.++..|+.+|-.+...+.......+. ..+++..++.++.. .++.|+..+...|..-+
T Consensus 53 A~ral~krl~~-~n~~vql~AL~LLd~~vkNcG~~Fh~eva------s~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 53 CLKAIMKRVNH-KVPHVALQALTLLGACVANCGKIFHLEVC------SRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHTCHHHHHHHT------SHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhHHHHHHHh------hHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 66778788887 88999999999988887654333443332 25677888888865 56789999888776655
No 146
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=71.10 E-value=18 Score=30.15 Aligned_cols=71 Identities=10% Similarity=0.120 Sum_probs=53.5
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc------CChhHHHHHHHHH
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS------NDSRLRTAAVWAV 476 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~------~~~~v~~~a~~~L 476 (533)
++..|.+.|.+ +++.++..|+.+|-.+...+......-+. ...++..|+.++.. .+..|+..+...|
T Consensus 51 A~ral~krl~~-~n~~vql~AL~LLd~~vkNCG~~Fh~eva------s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li 123 (171)
T 1juq_A 51 AVRLLAHKIQS-PQEWEALQALTVLEACMKNCGRRFHNEVG------KFRFLNELIKVVSPKYLGDRVSEKVKTKVIELL 123 (171)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSHHHHHHHHT------SHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHcCHHHHHHHh------hHHHHHHHHHHhccccCCCCCCHHHHHHHHHHH
Confidence 66778788887 89999999999998888755444443333 36788889998863 3578999998888
Q ss_pred Hhhc
Q 009514 477 LNLT 480 (533)
Q Consensus 477 ~~l~ 480 (533)
..-+
T Consensus 124 ~~W~ 127 (171)
T 1juq_A 124 YSWT 127 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7666
No 147
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=70.77 E-value=4.5 Score=44.36 Aligned_cols=189 Identities=9% Similarity=0.060 Sum_probs=101.7
Q ss_pred cHHHHHHhhcCCCH-HHHHH-HHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhcc----C
Q 009514 274 IVIPLVRLLDDTST-AVQVA-ALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFL----A 346 (533)
Q Consensus 274 ~i~~Lv~lL~~~~~-~v~~~-a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~----~ 346 (533)
++|.|+.+.+..+. +++.. |..++..++..... ...+ ..++..+.+... +++. .|..++..+..+... -
T Consensus 761 llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~--~~~~-~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l 836 (997)
T 1vsy_5 761 VLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIR--KNHV-AAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQL 836 (997)
T ss_dssp TTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCC--HHHH-HHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCC--HHHH-HHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHc
Confidence 56666666665544 77776 66777777654322 1122 124445555555 3455 777777666544321 1
Q ss_pred ChHhHHHHHHhhcHHHHHhhhCCCC-hhHHHHHHHHHHHhhcCC-c-chHHHHHh---hc-Cc--hHHHHHHHhccCCch
Q 009514 347 EDKCKEEIFMELTASLLASLICDPE-PSVQEQALALVRNLVDGR-I-NSVEYIFA---ED-GI--ILDAVGRQLRIASKA 417 (533)
Q Consensus 347 ~~~~~~~i~~~~~~~~l~~lL~~~~-~~v~~~a~~~L~~l~~~~-~-~~~~~i~~---~~-~~--~~~~L~~~L~~~~~~ 417 (533)
+.+.+ ....+.++.+|.|+. .+||+.|..+|+.+.... + .....++. .. +. ....+.+... .+.
T Consensus 837 ~~~~~-----~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~--~~~ 909 (997)
T 1vsy_5 837 TEEEK-----NKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLS--KTD 909 (997)
T ss_dssp CTTHH-----HHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHH--HHC
T ss_pred CHHHH-----HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccc--hHH
Confidence 11122 245678899999999 999999999999997665 3 22222221 11 00 0001111000 111
Q ss_pred hHHHHHHHHHHHhccCChhhH--HHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCC
Q 009514 418 EIEIQGMYVLGNVATGKESHK--EAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCS 482 (533)
Q Consensus 418 ~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~ 482 (533)
..+.+|.-.|+.+..+.|-.. ..-+ .+++..|.....++. -++..+-.+|+++-..
T Consensus 910 ~~rH~aVLgL~AlV~a~Py~vP~P~w~--------P~~l~~La~~~~~~~-~i~~tvk~tlseFkrT 967 (997)
T 1vsy_5 910 IKIHGNVLGLGAIISAFPYVFPLPPWI--------PKNLSNLSSWARTSG-MTGNAAKNTISEFKKV 967 (997)
T ss_dssp HHHHHHHHHHHHHHTTCSCCSSCCTHH--------HHHHHHHHTTSSSCS-SHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCCccc--------HHHHHHHHHHhCCCC-chHHHHHHHHHHHHhc
Confidence 345566677777776555322 1122 122233333344433 3888999999988753
No 148
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=70.71 E-value=11 Score=31.44 Aligned_cols=94 Identities=14% Similarity=0.070 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHH
Q 009514 284 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 363 (533)
Q Consensus 284 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l 363 (533)
++|+..-...|..+..=. ... ..++..|.+-+++.++.++..|+..|-.+..+.+...+..+.....++.|
T Consensus 28 ~~Dw~~ileicD~I~~~~---~~~------k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL 98 (171)
T 1juq_A 28 QEDWEYIIGFCDQINKEL---EGP------QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNEL 98 (171)
T ss_dssp SCCHHHHHHHHHHHHHST---THH------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHcCC---ccH------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence 456666666665554321 111 23566777778889999999999999988877666666667666677888
Q ss_pred HhhhCC------CChhHHHHHHHHHHHhh
Q 009514 364 ASLICD------PEPSVQEQALALVRNLV 386 (533)
Q Consensus 364 ~~lL~~------~~~~v~~~a~~~L~~l~ 386 (533)
++++.. .+..|+..++.++..-.
T Consensus 99 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 99 IKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 888852 46789999988887655
No 149
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=62.59 E-value=86 Score=28.00 Aligned_cols=133 Identities=16% Similarity=0.216 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHH
Q 009514 330 TIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGR 409 (533)
Q Consensus 330 ~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~ 409 (533)
+.+...+.-...++.+.+|..-.. .++.++.+..+++.++|......+...+...++.... +++.|..
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~-----~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~-------~l~~L~~ 97 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEE-----FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPH-------VINVVSM 97 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHH-----HHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Confidence 456666666666555444433222 2445555666777888888888887777544332221 4555656
Q ss_pred HhccCCchhHHHHHHHHHHHhc--------cCCh--hhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhh
Q 009514 410 QLRIASKAEIEIQGMYVLGNVA--------TGKE--SHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNL 479 (533)
Q Consensus 410 ~L~~~~~~~v~~~a~~~L~~l~--------~~~~--~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l 479 (533)
++.+ .++.|.+.++.+..++- .... +..+..-+. -..+-..++.+..+.+..+|..|...+..+
T Consensus 98 Ll~d-~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~-----m~~lK~~Il~~~~s~n~gvkl~~iKF~e~v 171 (257)
T 3gs3_A 98 LLRD-NSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNI-----LSLIKAQILDMIDNENDGIRTNAIKFLEGV 171 (257)
T ss_dssp HTTC-SCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHH-----HHHHHHHHHHGGGSSCHHHHHHHHHHHHHH
T ss_pred HHcC-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH-----HHHHHHHHHHHHccCCcchHHHHHHHHHHH
Confidence 6665 66777666555444433 2111 001111110 124456777788888899999999888775
Q ss_pred c
Q 009514 480 T 480 (533)
Q Consensus 480 ~ 480 (533)
.
T Consensus 172 I 172 (257)
T 3gs3_A 172 V 172 (257)
T ss_dssp H
T ss_pred H
Confidence 4
No 150
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=59.82 E-value=1.1e+02 Score=29.28 Aligned_cols=187 Identities=15% Similarity=0.076 Sum_probs=97.4
Q ss_pred hhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCC-HHHHHHHHHHHHHhhccCC
Q 009514 269 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMD-STIRLNALRALRNLIFLAE 347 (533)
Q Consensus 269 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~-~~~~~~al~aL~~l~~~~~ 347 (533)
..+..++..|+.+++++|++-|......|..+-..+...+..+. ...-..+.+...... ..-....++.++.+..+-.
T Consensus 170 ~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Ir-k~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa 248 (392)
T 2jak_A 170 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIINGFA 248 (392)
T ss_dssp TSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHH-HHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCC
T ss_pred hCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccC
Confidence 46678899999999999999999999999887665555554443 334455666665432 2223456667777665432
Q ss_pred hHhHHHHHHhhcHHHHHhhhCCCChhHH-HHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHH
Q 009514 348 DKCKEEIFMELTASLLASLICDPEPSVQ-EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYV 426 (533)
Q Consensus 348 ~~~~~~i~~~~~~~~l~~lL~~~~~~v~-~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~ 426 (533)
.-.|+. ........++.|.+......- .+-..++......++..... ++..+.+..-. .++.=..--+.-
T Consensus 249 ~PLKee-hk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-------vi~~LLk~WP~-tns~KevlFL~e 319 (392)
T 2jak_A 249 LPLKEE-HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-------VVMALLKYWPK-THSPKEVMFLNE 319 (392)
T ss_dssp SSCCHH-HHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHH-------HHHHHHHSSCS-SCCTTHHHHHHH
T ss_pred CCCcHH-HHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHH-------HHHHHHHhCCC-CCchHHHHHHHH
Confidence 112221 111223455666654432221 12223333333334433222 22333332211 111111111112
Q ss_pred HHHhcc-CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHH
Q 009514 427 LGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAV 473 (533)
Q Consensus 427 L~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~ 473 (533)
|..+.. -.+.....++ ..+...+.+.+.|++..|-+.|.
T Consensus 320 leeiLe~~~~~~f~~i~--------~~lF~~la~ci~S~hfqVAErAL 359 (392)
T 2jak_A 320 LEEILDVIEPSEFVKIM--------EPLFRQLAKCVSSPHFQVAERAL 359 (392)
T ss_dssp HHHHHHTCCHHHHHHHH--------HHHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHH--------HHHHHHHHHHHcCCcHHHHHHHH
Confidence 222222 1233444444 34667888999999999988886
No 151
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=59.22 E-value=21 Score=31.33 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=65.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHH
Q 009514 284 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLL 363 (533)
Q Consensus 284 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l 363 (533)
++|+..-...+..+.. ..... ..++..|.+-+++.++.++..|+..|-.+..+.+......+.....++.|
T Consensus 23 ~~dw~~ileicD~I~~---~~~~~------k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l 93 (226)
T 3zyq_A 23 ETDWESILQICDLIRQ---GDTQA------KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEEL 93 (226)
T ss_dssp SCCHHHHHHHHHHHHT---TSSCH------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHH
T ss_pred CcCHHHHHHHHHHHhC---CCccH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHH
Confidence 4566666666666532 11111 24566777778889999999999999988887776666666666666677
Q ss_pred HhhhC-CCChhHHHHHHHHHHHhh
Q 009514 364 ASLIC-DPEPSVQEQALALVRNLV 386 (533)
Q Consensus 364 ~~lL~-~~~~~v~~~a~~~L~~l~ 386 (533)
.+++. ..+++|++.++.++....
T Consensus 94 ~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 94 KDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHH
Confidence 77775 467889999998887665
No 152
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=59.10 E-value=25 Score=31.44 Aligned_cols=100 Identities=10% Similarity=0.004 Sum_probs=64.0
Q ss_pred CchhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC----C----CCHHHHHHHHHHHHHHhhccccccchhhhhc
Q 009514 201 HPRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA----H----DSSDVRSAACMCLRSVSRSIKNLSAGSFMNE 272 (533)
Q Consensus 201 ~~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~----~----~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~ 272 (533)
++..+.-+++++.|+..+..-.+..+........+++.+. + .+..+|.+++..+.|++-...+.+. +.
T Consensus 103 ~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~----~~ 178 (253)
T 3gae_A 103 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DL 178 (253)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS----CT
T ss_pred chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc----hH
Confidence 5678899999999998654313444444334444554432 2 3568999999999999764222111 12
Q ss_pred CcHHHHHHhhc---------CCCHHHHHHHHHHHHHHhcCC
Q 009514 273 TIVIPLVRLLD---------DTSTAVQVAALGAISNIVVDF 304 (533)
Q Consensus 273 ~~i~~Lv~lL~---------~~~~~v~~~a~~aL~nl~~~~ 304 (533)
.....+++.+. ..|+|....++-|++++....
T Consensus 179 e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~~~ 219 (253)
T 3gae_A 179 ELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 219 (253)
T ss_dssp THHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHhCc
Confidence 33444555554 238899999999999998643
No 153
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=59.03 E-value=35 Score=27.86 Aligned_cols=72 Identities=7% Similarity=0.068 Sum_probs=50.1
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHH-HHHhhcc---CChhHHHHHHHHHHh
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSC-IIKFLQS---NDSRLRTAAVWAVLN 478 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-lv~~L~~---~~~~v~~~a~~~L~~ 478 (533)
++..+.+.|.+++++.++..|+.+|-.+...+.......+. ..+++.. ++.++.. ++..|+..+...|..
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva------~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~ 127 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVA------SQDFVESVLVRTILPKNNPPTIVHDKVLNLIQS 127 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHT------SHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHh------hHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHH
Confidence 67778888875578899999999998887754333443332 2567777 7787742 345788888877766
Q ss_pred hc
Q 009514 479 LT 480 (533)
Q Consensus 479 l~ 480 (533)
-+
T Consensus 128 W~ 129 (157)
T 1elk_A 128 WA 129 (157)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 154
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=58.20 E-value=1.1e+02 Score=33.46 Aligned_cols=217 Identities=14% Similarity=0.085 Sum_probs=115.1
Q ss_pred ccchHHHHhhhcCCCcchhHHHHHHHHHhhcCch-hHHHHHhcCchHHHHHhhc----C-ChHHHHHHHHHHH-----HH
Q 009514 16 EENMEFLLSLLNNESENVSGLGASIISHSCKTSL-EQKLLFDAGVLKRLTSLLG----G-SLIQRDASLESIA-----TI 84 (533)
Q Consensus 16 ~~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~-~~~~i~~~g~i~~L~~lL~----~-~~~v~~~al~aL~-----~l 84 (533)
...+..|+.+--|...+|+..|-.++..+...-. .+.. .+|.+++.|+ + +.+..+-|+..|. ..
T Consensus 132 ~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~-----iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~ 206 (997)
T 1vsy_5 132 NLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGV-----VINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK 206 (997)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH
Confidence 4567788888888999999999999999876433 2322 3456666664 2 4444556666553 22
Q ss_pred hcCChhhhhhhccccCcccHHHHHHHHhcCChhhHHHHHHHHHHhhhcCCCcchhhhhHhhhHHHHHHhcCCCCchhhhH
Q 009514 85 FKNNPEVVSQFVGPDTGRTLSCIIEIVKDRFARTRLLASLCLIVIRNASPCYLQDVGIKTKLINNLLELLDDPGRVGDEA 164 (533)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~~~~a 164 (533)
+..+.... ...++.+++....+.|.++..+-.+...+.........-.......+ .-+..+++.-...
T Consensus 207 ~~~d~~~~--------~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~d~~i~~~ 274 (997)
T 1vsy_5 207 LMTDYKDI--------GRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPPDGTINLQ 274 (997)
T ss_dssp GGGCHHHH--------HHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCSCSSTTSH
T ss_pred HhcChHHH--------HHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCCcHHHHHH
Confidence 22222221 23455666666667777766666555444432211000001111111 1122111111122
Q ss_pred HHHHHhhhcCCHHHHHHHHH--cCcHHHHHHhhhcCCCC--chhHHHHHHHHHHhhccchhhhHhhhhhchHHHHHHhcC
Q 009514 165 SFAFSSLIAEKEDMQKLAFE--VNGVDKLYNHLQKGSLH--PRRFEGILLALADMCSKLECCRSRCLSLQVLKLVVDALA 240 (533)
Q Consensus 165 ~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~L~~~~~~--~~~~~~a~~aL~~l~~~~~~~~~~~~~~~~l~~l~~~L~ 240 (533)
.......- . ..++...+ .+....+++.+ +++.+ ++....++..+.++....+ ......++..+++.+.
T Consensus 275 ~~~~~~~~--~-~~r~~~~~~~~~L~~~l~~~~-~~~~h~~Wk~~~~~~~~l~~l~~r~d----~~~~~~~v~~~~~~l~ 346 (997)
T 1vsy_5 275 VEAVKLAK--K-KKREYYLSLLVDLQDKLLDKL-DNEKDMGWKIRMFILRFVTQIQSNLE----SKPDKRAVFSIISQIS 346 (997)
T ss_dssp HHHHHHHT--T-HHHHHHHHHHHHHHHHHHHHH-HSSTTCCSCHHHHHHHHHHHHTCCSS----CCCCHHHHHHHHGGGG
T ss_pred HHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHh-ccCCChhHHHHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHhhc
Confidence 22221111 1 11111111 12334555655 34468 8888888877666653321 2234457888999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q 009514 241 HDSSDVRSAACMCLRSV 257 (533)
Q Consensus 241 ~~~~~v~~~a~~~L~~l 257 (533)
++++.+|..|..++..+
T Consensus 347 ~dhp~~R~~a~~~l~~i 363 (997)
T 1vsy_5 347 TKHPEIIHLVVKSLLST 363 (997)
T ss_dssp GCCHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999877544
No 155
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=55.08 E-value=38 Score=27.64 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=63.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhc-CCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHH
Q 009514 284 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSK-SMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASL 362 (533)
Q Consensus 284 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~-~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~ 362 (533)
++|+..-...|..+.. ..... ..++..|.+-++ +.++.++..|+..|-.+..+.++..+..+.....++.
T Consensus 31 ~~Dw~~~leicD~I~~---~~~~~------k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e 101 (157)
T 1elk_A 31 SEDWALNMEICDIINE---TEEGP------KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVES 101 (157)
T ss_dssp SCCHHHHHHHHHHHHH---SSSHH------HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHH
T ss_pred CcCHHHHHHHHHHHhC---CCccH------HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHH
Confidence 4566666666665532 11111 235667777776 5788999999999998888777767776766666776
Q ss_pred -HHhhhC---CCChhHHHHHHHHHHHhh
Q 009514 363 -LASLIC---DPEPSVQEQALALVRNLV 386 (533)
Q Consensus 363 -l~~lL~---~~~~~v~~~a~~~L~~l~ 386 (533)
+++++. ++...|++.++.++..-.
T Consensus 102 ~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 102 VLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 677774 234688888887776554
No 156
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=52.89 E-value=78 Score=30.59 Aligned_cols=99 Identities=11% Similarity=0.034 Sum_probs=64.8
Q ss_pred CCchhHHHHHHHHHHhhccchhhhHhhh-hhchHHHHHHhcCC--------CCHHHHHHHHHHHHHHhhccccccchhhh
Q 009514 200 LHPRRFEGILLALADMCSKLECCRSRCL-SLQVLKLVVDALAH--------DSSDVRSAACMCLRSVSRSIKNLSAGSFM 270 (533)
Q Consensus 200 ~~~~~~~~a~~aL~~l~~~~~~~~~~~~-~~~~l~~l~~~L~~--------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~ 270 (533)
.++..+.-+++++.|+-.+. .....+. .......+++.+.. .+..++.+++..+.|++-.....+ .
T Consensus 274 ~~~an~MltlR~laNlF~~~-~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~----~ 348 (425)
T 3pst_A 274 KNITLTMLTVRILVNCFNNE-NWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN----S 348 (425)
T ss_dssp SSHHHHHHHHHHHHHHTTCT-TTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSC----S
T ss_pred CChhHHHHHHHHHHHhcCCc-chHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc----c
Confidence 35678899999999997654 4333333 33345556665531 246799999999999975422111 1
Q ss_pred hcCcHHHHHHhhc---------CCCHHHHHHHHHHHHHHhcC
Q 009514 271 NETIVIPLVRLLD---------DTSTAVQVAALGAISNIVVD 303 (533)
Q Consensus 271 ~~~~i~~Lv~lL~---------~~~~~v~~~a~~aL~nl~~~ 303 (533)
+......+++.+. ..|+|....++-||++|...
T Consensus 349 ~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 349 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 1233445666554 25889999999999999963
No 157
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=50.57 E-value=25 Score=30.81 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=50.5
Q ss_pred HHHHHhhhCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhcc
Q 009514 360 ASLLASLICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVAT 432 (533)
Q Consensus 360 ~~~l~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~ 432 (533)
+..|.+-|.+.++.++..|+.+|-.+..+........+.... +++.|.+++....++.|+..++..+..++.
T Consensus 47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~-fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 47 VNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQ-TMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHH-HHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 445566677899999999999998888665433322222211 566777777665678899999999888875
No 158
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=49.80 E-value=31 Score=30.06 Aligned_cols=72 Identities=17% Similarity=0.273 Sum_probs=52.3
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhhhC-CCChhHHHHHHHHHHHhh
Q 009514 315 GGVKLLVQLSKSMDSTIRLNALRALRNLIFLAEDKCKEEIFMELTASLLASLIC-DPEPSVQEQALALVRNLV 386 (533)
Q Consensus 315 ~~i~~L~~ll~~~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~lL~-~~~~~v~~~a~~~L~~l~ 386 (533)
.++..|.+-+++.++.++..|+..|-.+..+.+...+..+.....++.+.+++. ..+.+|++.++.++..-.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 345667777788999999999999998887665555556555556666777664 456788888887776554
No 159
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=49.76 E-value=1.6e+02 Score=27.05 Aligned_cols=131 Identities=9% Similarity=-0.030 Sum_probs=72.5
Q ss_pred hhHHHHHHhhhcCCHHHHHHHHHcCcHHHHHHhhhcCCCCchhHHHHHHHHHHhhccchhhhHhhhhh--ch----HHHH
Q 009514 162 DEASFAFSSLIAEKEDMQKLAFEVNGVDKLYNHLQKGSLHPRRFEGILLALADMCSKLECCRSRCLSL--QV----LKLV 235 (533)
Q Consensus 162 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~L~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~--~~----l~~l 235 (533)
..+...|..++-+- +....+.++. .+.|-.++.....++.+++.+.++|++--.++|...+.+.+. .. ++.+
T Consensus 46 e~aLD~L~ElSHDi-~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L 123 (315)
T 3qml_C 46 EDSFDRIMEFAHDY-KHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAAL 123 (315)
T ss_dssp HHHHHHHGGGTTSH-HHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHhhhhH-HhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHH
Confidence 34555555555333 2223333322 334444443333457789999999999888888776665543 22 2333
Q ss_pred HHhcCC---CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhcCC--CHHHHHHHHHHHHHH
Q 009514 236 VDALAH---DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLDDT--STAVQVAALGAISNI 300 (533)
Q Consensus 236 ~~~L~~---~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~~~--~~~v~~~a~~aL~nl 300 (533)
..+... ....++..-+.+|..|..+.. . | ...++..|.+++.-. ++.++..++..+..+
T Consensus 124 ~~~~~~~~~~~~~l~KR~LsII~~L~~~~~----~-F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~ 187 (315)
T 3qml_C 124 SNLNDSNHRSSNILIKRYLSILNELPVTSE----D-L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKI 187 (315)
T ss_dssp HHHHCC--CCCHHHHHHHHHHHHHSCCCST----T-C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhhcccchhHHHHHHHHHHHHHHhcChH----h-h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 333332 233455555666666665521 1 2 234566777776544 778887777777544
No 160
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=49.22 E-value=75 Score=27.01 Aligned_cols=110 Identities=13% Similarity=0.107 Sum_probs=70.0
Q ss_pred chHHHHHHhcCC------CCHHHHHHHHHHHHHHhhccccccchhhhhcCcHHHHHHhhc--C-CCHHHHHHHHHHHHHH
Q 009514 230 QVLKLVVDALAH------DSSDVRSAACMCLRSVSRSIKNLSAGSFMNETIVIPLVRLLD--D-TSTAVQVAALGAISNI 300 (533)
Q Consensus 230 ~~l~~l~~~L~~------~~~~v~~~a~~~L~~ls~~~~~~~~~~~~~~~~i~~Lv~lL~--~-~~~~v~~~a~~aL~nl 300 (533)
..+|.++.++.+ .+........+....+..+ +...-. .+-...+|+++.++= + ....+|+.|+..+..+
T Consensus 40 ~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N-~~l~le-pYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I 117 (196)
T 4atg_A 40 QLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKN-KHVFID-PYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYI 117 (196)
T ss_dssp TTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHC-TTCCCG-GGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcC-CCCChH-HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 367777777642 3556666667777777766 444433 355667888877662 1 2238999999999999
Q ss_pred hcCCchhHHHHHHhCcHHHHHHhhcCC--CHHHHHHHHHHHHHh
Q 009514 301 VVDFTTRRSTFIRLGGVKLLVQLSKSM--DSTIRLNALRALRNL 342 (533)
Q Consensus 301 ~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~~~~~al~aL~~l 342 (533)
+..+...-. -++..+...+.+.+.++ +...+-.|+..|..+
T Consensus 118 ~~~~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 118 YDTYSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHHHTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHHhCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHh
Confidence 875443221 22334556666666554 456677788888877
No 161
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=48.41 E-value=3.4e+02 Score=30.60 Aligned_cols=105 Identities=14% Similarity=0.088 Sum_probs=64.1
Q ss_pred cchHHHHhhhcCCCcchhHHHHHHHHHhhcCchhHHHHHhcCchHHHHHhhcCChHHHHHHHHHHHHHhcCChhhhhhhc
Q 009514 17 ENMEFLLSLLNNESENVSGLGASIISHSCKTSLEQKLLFDAGVLKRLTSLLGGSLIQRDASLESIATIFKNNPEVVSQFV 96 (533)
Q Consensus 17 ~~i~~L~~lL~~~~~~v~~~a~~~l~~~~~~~~~~~~i~~~g~i~~L~~lL~~~~~v~~~al~aL~~l~~~~~~~~~~~~ 96 (533)
.....++.+++-....+|...+..+=.+.+..+|.. +...|..+|..++.+....+.+|++|.-+ ++...++.
T Consensus 157 ~l~~ki~~vl~vap~~lQ~diI~sLPeIl~ds~H~~------v~~~L~~lL~~~~~L~~~iLdaLs~L~Ls-~~~l~~vr 229 (1323)
T 3s4w_B 157 DLTAQMMQLISVAPVNLQHDFITSLPEILGDSQHAN------VGKELGELLVQNTSLTVPILDVFSSLRLD-PNFLSKIR 229 (1323)
T ss_dssp HHHHHHHHHHHHSCTTTHHHHHHTHHHHSCGGGHHH------HHHHHHHHHHHCSTTHHHHHHHHHHSCCC-HHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhHHHhcchhhHH------HHHHHHHHHhcCcchHHHHHHHHHcCCCC-HHHHHHHH
Confidence 344666777765556777777777777776655543 44567777776667788888999888643 33322221
Q ss_pred -------cccCcccHHHHHH-HHhcCChhhHHHHHHHHHH
Q 009514 97 -------GPDTGRTLSCIIE-IVKDRFARTRLLASLCLIV 128 (533)
Q Consensus 97 -------~~~~~~~i~~l~~-ll~~~~~~v~~~a~~~L~~ 128 (533)
.......+|.+++ ++++.++..-..++.-++.
T Consensus 230 ~~vl~~L~s~~~e~LP~lIkFLL~s~t~~~~~evI~~LR~ 269 (1323)
T 3s4w_B 230 QLVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRE 269 (1323)
T ss_dssp HHHHHSTTSSCTTHHHHHHHHHHHSCSSTTHHHHHHHHHH
T ss_pred HHHHHHhccCChhhhHHHHHHHHHhCCHhhHHHHHHHHHH
Confidence 1234567888888 4555544433344444554
No 162
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=46.78 E-value=72 Score=27.64 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=50.8
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHhhc
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQS-NDSRLRTAAVWAVLNLT 480 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~-~~~~v~~~a~~~L~~l~ 480 (533)
++..|.+.|.+ +++.++..|+.+|-.+..........-+. ...++..++.++.+ ++..|+..+...+...+
T Consensus 43 a~r~l~krl~~-~n~~~~l~aL~Lle~~vkNcG~~f~~eva------~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNS-PNPHSSCYSLLVLESIVKNCGAPVHEEVF------TKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHSHHHHHHHHS------SHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHHHHHHHHhccCHHHHHHHH------hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 66777788887 89999999999998888754433333222 25677788887764 46789988887776555
No 163
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=46.52 E-value=85 Score=27.94 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhH
Q 009514 375 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 454 (533)
Q Consensus 375 ~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 454 (533)
+-.++.++|-+....+.. +.+...+...+.+ ..+..+.-++++++|+.......++.+.. +...
T Consensus 71 ~fP~lDllRl~~~~~~~~--------~~l~~~l~~~~~~-~~~~~~ml~lR~l~NlF~~~~~g~~l~~~-------~~~~ 134 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS--------SDIKDYIEEGLGN-KNITLTMLTVRILVNCFNNENWGVKLLES-------NQVY 134 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG--------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHTTCTTTHHHHHTS-------HHHH
T ss_pred cchHHHHHHHHHcCCchH--------HHHHHHHHHhcCC-CchhHHHHHHHHHHHcccCCchHHHHHhc-------chhH
Confidence 556777777776543311 1122333333333 56678888999999999765433444432 2223
Q ss_pred HHHHHhhc--------cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcC---------CCCcHHHH
Q 009514 455 SCIIKFLQ--------SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVND---------PCLDVKLR 517 (533)
Q Consensus 455 ~~lv~~L~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~---------~~~~v~~~ 517 (533)
..++..+. +++.+++.+++.++.|++........ +......+.+.+.. .++|...|
T Consensus 135 ~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~-------~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR 207 (253)
T 3gae_A 135 KSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS-------DLELLPIVADAINTKYGPLEEYQECEEAAYR 207 (253)
T ss_dssp TTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS-------CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc-------hHHHHHHHHHHHHHHhcccccccCCHHHHHH
Confidence 34444331 13567999999999999951000000 11223344443331 26678889
Q ss_pred HHHHHHHHhhh
Q 009514 518 VKTALEQFNSF 528 (533)
Q Consensus 518 a~~aL~~~~~~ 528 (533)
+..||+++.-.
T Consensus 208 ~LvAlGtL~~~ 218 (253)
T 3gae_A 208 LTVAYGNLATV 218 (253)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999998743
No 164
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=45.81 E-value=78 Score=29.87 Aligned_cols=99 Identities=10% Similarity=0.033 Sum_probs=63.5
Q ss_pred CCchhHHHHHHHHHHhhccchhhhHhhhhh-chHHHHHHhcC--------CCCHHHHHHHHHHHHHHhhccccccchhhh
Q 009514 200 LHPRRFEGILLALADMCSKLECCRSRCLSL-QVLKLVVDALA--------HDSSDVRSAACMCLRSVSRSIKNLSAGSFM 270 (533)
Q Consensus 200 ~~~~~~~~a~~aL~~l~~~~~~~~~~~~~~-~~l~~l~~~L~--------~~~~~v~~~a~~~L~~ls~~~~~~~~~~~~ 270 (533)
.++..+.-+++++.|+-.+. .....+... .....+++.+. ..+..++.+++..+.|++-.....+ .
T Consensus 211 ~~~~n~MltlR~laNlF~~~-~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~----~ 285 (362)
T 3l3f_X 211 KNITLTMLTVRILVNCFNNE-NWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN----S 285 (362)
T ss_dssp SSHHHHHHHHHHHHHHTTCT-TTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC----S
T ss_pred CChhHHHHHHHHHHHhccCc-chHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc----c
Confidence 35678899999999997654 433333332 23344444432 1256899999999999975422111 1
Q ss_pred hcCcHHHHHHhhc---------CCCHHHHHHHHHHHHHHhcC
Q 009514 271 NETIVIPLVRLLD---------DTSTAVQVAALGAISNIVVD 303 (533)
Q Consensus 271 ~~~~i~~Lv~lL~---------~~~~~v~~~a~~aL~nl~~~ 303 (533)
+......+++.+. ..|+|....++-||++|+..
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 1233445666555 35899999999999999953
No 165
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=37.49 E-value=2.4e+02 Score=25.78 Aligned_cols=135 Identities=13% Similarity=0.097 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhhccCChHhHHHHHHhhcHHHHHhh--hCCCChhHHHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHH
Q 009514 331 IRLNALRALRNLIFLAEDKCKEEIFMELTASLLASL--ICDPEPSVQEQALALVRNLVDGRINSVEYIFAEDGIILDAVG 408 (533)
Q Consensus 331 ~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~~l~~l--L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~ 408 (533)
.-..|+..|..++. +-+.--++.+.. .+.|..+ .....+.+++.+.++++....++|..+..+.+.-..++..+.
T Consensus 44 ~le~aLD~L~ElSH--Di~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 44 RLEDSFDRIMEFAH--DYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHGGGTT--SHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHhhh--hHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 34455555555532 222223344321 2333333 344567899999999999999999988888876544555444
Q ss_pred HHhcc---C---CchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHhhc
Q 009514 409 RQLRI---A---SKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN--DSRLRTAAVWAVLNLT 480 (533)
Q Consensus 409 ~~L~~---~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~--~~~v~~~a~~~L~~l~ 480 (533)
.-|.. . ....+...-+.+|..+........ ...+..|.+++... +..++..+...+..+-
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~F~------------~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTSEDLP------------IYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTTC--------------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcChHhhh------------hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 33322 0 123556667788888876542111 12224555555544 7788888887776665
No 166
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=35.28 E-value=3.2e+02 Score=26.55 Aligned_cols=232 Identities=16% Similarity=0.105 Sum_probs=125.5
Q ss_pred hhhcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcCC-CHHHHHHHHHHHHHhhccCC
Q 009514 269 FMNETIVIPLVRLLDDTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKSM-DSTIRLNALRALRNLIFLAE 347 (533)
Q Consensus 269 ~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~~~~~al~aL~~l~~~~~ 347 (533)
..+..++..|+.+++++|++-|......|..+-..+...+..+.. ..-..+.+.+... ...-....++.++.+..+-.
T Consensus 158 ~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa 236 (449)
T 2npp_B 158 YIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFA 236 (449)
T ss_dssp TSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCC
T ss_pred hCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccC
Confidence 567788999999999999999999999998887666566644443 3334455555432 22223456667777765432
Q ss_pred hHhHHHHHHhhcHHHHHhhhCCCChhHH-HHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHH-
Q 009514 348 DKCKEEIFMELTASLLASLICDPEPSVQ-EQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMY- 425 (533)
Q Consensus 348 ~~~~~~i~~~~~~~~l~~lL~~~~~~v~-~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~- 425 (533)
.-.++. ........|+.|.+......- .+-..++......++..... ++..+ |..=|......+.++
T Consensus 237 ~PLKee-hk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~-------vi~~L---Lk~WP~tns~KevlFL 305 (449)
T 2npp_B 237 LPLKEE-HKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEP-------VVMAL---LKYWPKTHSPKEVMFL 305 (449)
T ss_dssp SSCCHH-HHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHH-------HHHHH---HHTCCSSCHHHHHHHH
T ss_pred CCCcHH-HHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHH-------HHHHH---HHhCCCCCchHHHHHH
Confidence 112221 111224556666665443222 22233333344444433222 22233 322233333333332
Q ss_pred -HHHHhcc-CChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCC---cH
Q 009514 426 -VLGNVAT-GKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAG---IV 500 (533)
Q Consensus 426 -~L~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g---~~ 500 (533)
-|..+.. -.+...+.++ ..+...+.+.+.|++..|-+.|.....| ++...+.... ++
T Consensus 306 ~eleeile~~~~~ef~~i~--------~~lF~~la~ci~S~hfqVAErAL~~w~N----------~~i~~li~~n~~~Il 367 (449)
T 2npp_B 306 NELEEILDVIEPSEFVKIM--------EPLFRQLAKCVSSPHFQVAERALYYWNN----------EYIMSLISDNAAKIL 367 (449)
T ss_dssp HHHHHHHTTCCHHHHHHHH--------HHHHHHHHHHHTCSCHHHHHHHHGGGGC----------HHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHH--------HHHHHHHHHHHcCCCHHHHHHHHHHHCC----------HHHHHHHHhchhhhH
Confidence 3333333 2333444444 3466788999999999998888643321 1222222211 33
Q ss_pred HHHHhhh----c-CCCCcHHHHHHHHHHHHhhhcc
Q 009514 501 SHVKNMV----N-DPCLDVKLRVKTALEQFNSFDD 530 (533)
Q Consensus 501 ~~L~~ll----~-~~~~~v~~~a~~aL~~~~~~~~ 530 (533)
|.+..-+ + .=+..++..+..++.-+.+...
T Consensus 368 Pii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~ 402 (449)
T 2npp_B 368 PIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQ 402 (449)
T ss_dssp HHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCH
T ss_pred HhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCH
Confidence 4444433 2 2267899999999887766544
No 167
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=32.56 E-value=1e+02 Score=24.57 Aligned_cols=74 Identities=12% Similarity=0.105 Sum_probs=49.2
Q ss_pred hhHHHHHHhhccCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCc-HHHHHhhhcCCC--------CcHHHHHHHHH
Q 009514 452 KAQSCIIKFLQSNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGI-VSHVKNMVNDPC--------LDVKLRVKTAL 522 (533)
Q Consensus 452 ~~~~~lv~~L~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~-~~~L~~ll~~~~--------~~v~~~a~~aL 522 (533)
.+++.|.+-|.+.++.++..|+.+|-.|+. .|+..-...+.+.-. |..+.+.--.++ ..||++|.+++
T Consensus 49 eim~~L~kRL~~k~~~vk~KaL~lL~yL~~---~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~ 125 (140)
T 1vdy_A 49 EFSEFILKRLDNKSPIVKQKALRLIKYAVG---KSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETI 125 (140)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHHHTT---TSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcceeehHHHHHHHHHH---hCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHH
Confidence 345678888888889999999999999995 466655566655432 222222221112 35888898888
Q ss_pred HHHhhh
Q 009514 523 EQFNSF 528 (533)
Q Consensus 523 ~~~~~~ 528 (533)
.-+.+.
T Consensus 126 ~ll~d~ 131 (140)
T 1vdy_A 126 SAIFSE 131 (140)
T ss_dssp HHHTCC
T ss_pred HHHhCc
Confidence 877654
No 168
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=31.21 E-value=1.5e+02 Score=21.52 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=37.9
Q ss_pred HHHHHhhccCC--hhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHH
Q 009514 455 SCIIKFLQSND--SRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLR 517 (533)
Q Consensus 455 ~~lv~~L~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~ 517 (533)
..|-++.+++. .++|..|-.+...|... +.+ -.++...++..|-++.+||+..+--|
T Consensus 21 ~~L~~I~~D~sVPRNIRraA~ea~~~L~~e--~~~----~~vRAAtAIs~LDeISnDPNmP~htR 79 (94)
T 2qzg_A 21 SMLEEIVEDTTVPRNIRAAADNAKNALHNE--EQE----LIVRSATAIQYLDDISEDPNMPIHTR 79 (94)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHTTCT--TSC----HHHHHHHHHHHHHHHTTCTTCCHHHH
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHhCC--Ccc----hhHHHHHHHHHHHHhhcCCCCChHHH
Confidence 34445555543 47999999999998842 112 23455667889999999887764433
No 169
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=30.37 E-value=1.5e+02 Score=21.27 Aligned_cols=56 Identities=23% Similarity=0.236 Sum_probs=37.0
Q ss_pred HHHHhhccCC--hhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHH
Q 009514 456 CIIKFLQSND--SRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLR 517 (533)
Q Consensus 456 ~lv~~L~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~ 517 (533)
.|-++.++.. .++|..|-.+...|... +.+ -.++...++..|-++.+||+..+--|
T Consensus 18 ~L~~I~~D~sVPRNIRraA~ea~~~L~~e--~~~----~~vRAA~aIs~LDeISnDPNmP~h~R 75 (89)
T 2qsb_A 18 LLDELSQDITVPKNVRKVAQDSKAKLSQE--NES----LDLRCATVLSMLDEMANDPNVPAHGR 75 (89)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHHTCT--TSC----HHHHHHHHHHHHHHHHTCTTSCHHHH
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHhCC--Ccc----hhHHHHHHHHHHHHhhcCCCCChHHH
Confidence 3444444443 47999999999999842 112 23455668889999999888764433
No 170
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=30.03 E-value=2.9e+02 Score=25.99 Aligned_cols=131 Identities=16% Similarity=0.214 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhH
Q 009514 375 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 454 (533)
Q Consensus 375 ~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 454 (533)
+-.++.++|-+....+.. +.+...+...+.+ ..+..+.-++++++|+...... ...++.+ ....
T Consensus 180 ~FP~LDLLRl~v~~~~~~--------~~l~~li~~~~~~-~~~~n~MltlR~laNlF~~~~~-g~~ll~~------~~~~ 243 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS--------SDIKDYIEEGLGN-KNITLTMLTVRILVNCFNNENW-GVKLLES------NQVY 243 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG--------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHTTCTTT-HHHHHTS------HHHH
T ss_pred cchHHHHHHHHhcCCChH--------HHHHHHHHHhcCC-CChhHHHHHHHHHHHhccCcch-HHHHHhc------chhH
Confidence 555777777766543311 1122333233333 5667788899999999975542 3333321 1122
Q ss_pred HHHHHhhc--------cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc---------CCCCcHHHH
Q 009514 455 SCIIKFLQ--------SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN---------DPCLDVKLR 517 (533)
Q Consensus 455 ~~lv~~L~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~---------~~~~~v~~~ 517 (533)
..+.+.+. ..+..++.+++..+.|++... +... .+......+.+.+. ..+++...|
T Consensus 244 ~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~------~~~~-~~~el~~~l~~~l~~~~g~~E~~~~d~EA~yR 316 (362)
T 3l3f_X 244 KSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV------TKGN-SDLELLPIVADAINTKYGPLEEYQECEEAAYR 316 (362)
T ss_dssp TTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHH------HHTC-SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHH------hccc-chHHHHHHHHHHHHhhccccccccCCHHHHHH
Confidence 33343331 235679999999999999410 0000 01222334444443 247788889
Q ss_pred HHHHHHHHhhh
Q 009514 518 VKTALEQFNSF 528 (533)
Q Consensus 518 a~~aL~~~~~~ 528 (533)
+..||+++.-.
T Consensus 317 lLVALGtL~~~ 327 (362)
T 3l3f_X 317 LTVAYGNLATV 327 (362)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998743
No 171
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=29.59 E-value=94 Score=25.15 Aligned_cols=73 Identities=4% Similarity=0.028 Sum_probs=48.2
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHH-HHHhhcc---CChhHHHHHHHHHHh
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSC-IIKFLQS---NDSRLRTAAVWAVLN 478 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-lv~~L~~---~~~~v~~~a~~~L~~ 478 (533)
++..+.+.|.++.++.++..|+..|-.+...+.......+. ...++.- ++.++.. .+..|+..+...|..
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eia------sk~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~ 127 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIV------KKEFVKENLVKLLNPRYNLPLDIQNRILNFIKT 127 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHS------SHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHH------hhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 67778888875467788888888887777644433343332 1455553 6666653 234799999888887
Q ss_pred hcC
Q 009514 479 LTC 481 (533)
Q Consensus 479 l~~ 481 (533)
.+.
T Consensus 128 Wa~ 130 (152)
T 3rru_A 128 WSQ 130 (152)
T ss_dssp HHT
T ss_pred HHH
Confidence 773
No 172
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=28.43 E-value=4.1e+02 Score=25.60 Aligned_cols=131 Identities=16% Similarity=0.214 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhcCCcchHHHHHhhcCchHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhH
Q 009514 375 QEQALALVRNLVDGRINSVEYIFAEDGIILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQ 454 (533)
Q Consensus 375 ~~~a~~~L~~l~~~~~~~~~~i~~~~~~~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~ 454 (533)
+-.++.++|-+....+.. +.+...+...+.+ ..+..+.-++++++|+...... ...++.. ....
T Consensus 243 ~FPaLDLLRl~v~~p~~~--------~~l~~li~~~l~~-~~~an~MltlR~laNlF~~~~~-g~~ll~~------~~~~ 306 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS--------SDIKDYIEEGLGN-KNITLTMLTVRILVNCFNNENW-GVKLLES------NQVY 306 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG--------GGGHHHHHHHTTC-SSHHHHHHHHHHHHHHTTCTTT-HHHHHTS------HHHH
T ss_pred ccHHHHHHHHHHcCCchH--------HHHHHHHHHhcCC-CChhHHHHHHHHHHHhcCCcch-HHHHhhC------chhH
Confidence 556777777776543311 1133333333433 5667788899999999975542 3333321 2223
Q ss_pred HHHHHhhc--------cCChhHHHHHHHHHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhc---------CCCCcHHHH
Q 009514 455 SCIIKFLQ--------SNDSRLRTAAVWAVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVN---------DPCLDVKLR 517 (533)
Q Consensus 455 ~~lv~~L~--------~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~---------~~~~~v~~~ 517 (533)
..+++.+. ..+.+++.+++..+.|++... +... .+......+.+.+. ..+++...|
T Consensus 307 ~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~------~~~~-~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yR 379 (425)
T 3pst_A 307 KSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALV------TKGN-SDLELLPIVADAINTKYGPLEEYQECEEAAYR 379 (425)
T ss_dssp HHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH------HHSC-SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHH
T ss_pred HHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHH------hccc-chHHHHHHHHHHHHhhccccccccCCHHHHHH
Confidence 44444432 235679999999999999410 0000 01122334444443 236788889
Q ss_pred HHHHHHHHhhh
Q 009514 518 VKTALEQFNSF 528 (533)
Q Consensus 518 a~~aL~~~~~~ 528 (533)
+..||+++.-.
T Consensus 380 lLVALGtLv~~ 390 (425)
T 3pst_A 380 LTVAYGNLATV 390 (425)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999998743
No 173
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=25.30 E-value=3.2e+02 Score=23.37 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=18.3
Q ss_pred HHHHHhhccCChhHHHHHHHHHHhhcC
Q 009514 455 SCIIKFLQSNDSRLRTAAVWAVLNLTC 481 (533)
Q Consensus 455 ~~lv~~L~~~~~~v~~~a~~~L~~l~~ 481 (533)
+.+-.++.+++.-|+++..|+|..++.
T Consensus 162 ~i~~~~~~d~~~yV~kavgW~Lr~~~k 188 (220)
T 2b6c_A 162 KAIIYDRTTEEFFIQKAIGWSLRQYSK 188 (220)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 444446666777777777777777774
No 174
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=25.14 E-value=1.8e+02 Score=23.50 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCchhHHHHHHhCcHHHHHHhhcC-CCHHHHHHHHHHHHHhhccCChHhHHHHHHhhcHH-
Q 009514 284 DTSTAVQVAALGAISNIVVDFTTRRSTFIRLGGVKLLVQLSKS-MDSTIRLNALRALRNLIFLAEDKCKEEIFMELTAS- 361 (533)
Q Consensus 284 ~~~~~v~~~a~~aL~nl~~~~~~~~~~~~~~~~i~~L~~ll~~-~~~~~~~~al~aL~~l~~~~~~~~~~~i~~~~~~~- 361 (533)
++|+..-...|..+..= .... ..++..|.+-++. .++.+...|+..|-.+..+.+......+.....+.
T Consensus 31 ~~Dw~~ileicD~In~~---~~~p------keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e 101 (152)
T 3rru_A 31 TEDWGQFMHICDIINTT---QDGP------KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKE 101 (152)
T ss_dssp SCCHHHHHHHHHHHHHS---TTHH------HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTT
T ss_pred CccHHHHHHHHHHHhCC---CccH------HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHH
Confidence 45676666666665431 1111 2456667666664 57777888888888888777765565555544454
Q ss_pred HHHhhhCC---CChhHHHHHHHHHHHhhcC
Q 009514 362 LLASLICD---PEPSVQEQALALVRNLVDG 388 (533)
Q Consensus 362 ~l~~lL~~---~~~~v~~~a~~~L~~l~~~ 388 (533)
.+++++.. ....|+..++.++..-+..
T Consensus 102 ~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 102 NLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp TTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 36666653 3457999999988887744
No 175
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=22.79 E-value=3.5e+02 Score=22.86 Aligned_cols=113 Identities=11% Similarity=0.082 Sum_probs=56.7
Q ss_pred hHHHHHHHhcc-----CCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccC---ChhHHHHHHH
Q 009514 403 ILDAVGRQLRI-----ASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSN---DSRLRTAAVW 474 (533)
Q Consensus 403 ~~~~L~~~L~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~---~~~v~~~a~~ 474 (533)
+++.+...+.. ..+...-...+.+...+.....-..+..+ +.++|.++.++-+. ...+|..|+.
T Consensus 41 LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYl--------H~LipsvLtCll~k~l~~~~LRd~AA~ 112 (196)
T 4atg_A 41 LVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYL--------HQILPSLLTCVIGKSIVDDDVRKMSAD 112 (196)
T ss_dssp THHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGH--------HHHHHHHHHHHHCTTCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHH--------HHHHHHHHHHHHhcccCHHHHHHHHHH
Confidence 55555544432 12334444445555555543332334444 45667777776432 2379999999
Q ss_pred HHHhhcCCCCCCcHHHHHHHHHCCcHHHHHhhhcCCCCcHHHHHHHHHHHHhhhc
Q 009514 475 AVLNLTCSSSPGSSGRLVKLHDAGIVSHVKNMVNDPCLDVKLRVKTALEQFNSFD 529 (533)
Q Consensus 475 ~L~~l~~~~~~~~~~~~~~l~~~g~~~~L~~ll~~~~~~v~~~a~~aL~~~~~~~ 529 (533)
.+..+++..+...+.-..+ +...+.+.+.|+....... ..|+.-+..++
T Consensus 113 lL~~I~~~~~~~y~~L~~R-----I~~tl~k~l~dp~~~l~t~-YGAi~GL~~lG 161 (196)
T 4atg_A 113 IVKYIYDTYSRSYKTLAPR-----VLKTLKGVWMDPNRSEDSQ-YGALYCLSILS 161 (196)
T ss_dssp HHHHHHHHHTTTSTTHHHH-----HHHHHHHHHTCTTSCHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHhCccCchHHHH-----HHHHHHHHHcCCCCChHHH-HHHHHHHHHhH
Confidence 9999996322211111111 3456666665555544332 34444444433
No 176
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=22.32 E-value=2.9e+02 Score=21.86 Aligned_cols=67 Identities=12% Similarity=0.131 Sum_probs=43.2
Q ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHhccCChhhHHHHHHHhhHhhhhhhHHHHHHhhccCChhHHHHHHHHHH
Q 009514 403 ILDAVGRQLRIASKAEIEIQGMYVLGNVATGKESHKEAVMDQLLLRAENKAQSCIIKFLQSNDSRLRTAAVWAVL 477 (533)
Q Consensus 403 ~~~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~L~~~~~~v~~~a~~~L~ 477 (533)
+++.+.+.+.. ..++-+..+++++-.+...........+. .++.+.+.......+...|......+.
T Consensus 44 Iv~~i~~~i~k-~~p~~KL~~LYL~DsIvkN~g~~y~~~F~-------~~l~~~f~~~~~~~d~~~r~k~~rL~~ 110 (144)
T 1sz9_A 44 FVDAIESRIEK-CMPKQKLYAFYALDSICKNVGSPYTIYFS-------RNLFNLYKRTYLLVDNTTRTKLINMFK 110 (144)
T ss_dssp HHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHTCTTHHHHHH-------TTHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-CCHhhHHHHHHHHHHHHHhccchHHHHHH-------HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555566665 67888999999988887633222333443 566677777766667777766655443
Done!