Query 009515
Match_columns 533
No_of_seqs 422 out of 3192
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 14:03:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009515.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009515hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 9.2E-89 2E-93 744.2 50.3 500 22-531 16-526 (623)
2 PF12819 Malectin_like: Carboh 100.0 3.9E-62 8.5E-67 497.7 31.8 319 34-367 1-347 (347)
3 PLN03150 hypothetical protein; 99.9 5.7E-22 1.2E-26 217.7 19.3 318 32-512 194-532 (623)
4 PF11721 Malectin: Di-glucose 99.7 8.7E-17 1.9E-21 148.1 7.5 141 31-177 2-174 (174)
5 PF11721 Malectin: Di-glucose 99.6 9.7E-17 2.1E-21 147.8 5.3 143 201-351 2-151 (174)
6 PLN00113 leucine-rich repeat r 99.5 1.7E-13 3.8E-18 159.7 14.1 147 375-532 27-200 (968)
7 PLN00113 leucine-rich repeat r 99.5 5.7E-14 1.2E-18 163.8 8.6 109 424-533 475-584 (968)
8 KOG0617 Ras suppressor protein 99.4 2.1E-14 4.5E-19 126.8 -3.3 172 336-531 35-210 (264)
9 KOG0444 Cytoskeletal regulator 99.4 1E-13 2.2E-18 143.4 0.6 172 337-532 10-185 (1255)
10 KOG0472 Leucine-rich repeat pr 99.3 9.7E-14 2.1E-18 137.2 -2.7 189 336-533 70-288 (565)
11 KOG4194 Membrane glycoprotein 99.2 1.8E-12 3.9E-17 133.6 0.7 187 335-532 174-377 (873)
12 KOG0444 Cytoskeletal regulator 99.2 1.3E-12 2.7E-17 135.5 -1.6 193 333-532 125-351 (1255)
13 KOG0472 Leucine-rich repeat pr 99.2 6.3E-12 1.4E-16 124.6 0.7 175 335-533 363-541 (565)
14 KOG0617 Ras suppressor protein 99.1 1.2E-11 2.6E-16 109.5 -2.0 150 361-532 34-185 (264)
15 KOG0618 Serine/threonine phosp 99.0 1.3E-10 2.7E-15 126.1 1.0 174 334-531 310-487 (1081)
16 KOG0618 Serine/threonine phosp 99.0 1.1E-10 2.5E-15 126.4 0.6 192 334-533 241-465 (1081)
17 KOG0532 Leucine-rich repeat (L 99.0 8.1E-11 1.8E-15 121.5 -1.2 192 309-532 54-246 (722)
18 KOG4194 Membrane glycoprotein 98.9 6.3E-10 1.4E-14 115.2 5.0 106 425-532 198-305 (873)
19 PF12819 Malectin_like: Carboh 98.9 5.6E-09 1.2E-13 107.1 11.4 150 32-182 181-347 (347)
20 KOG0532 Leucine-rich repeat (L 98.9 4E-10 8.7E-15 116.4 0.5 157 338-520 102-258 (722)
21 PRK15387 E3 ubiquitin-protein 98.8 5.2E-09 1.1E-13 116.2 7.2 95 426-533 364-458 (788)
22 PF14580 LRR_9: Leucine-rich r 98.7 1E-08 2.3E-13 94.0 3.4 102 425-533 20-126 (175)
23 PRK15370 E3 ubiquitin-protein 98.6 4.1E-08 8.8E-13 109.6 7.1 101 424-533 325-428 (754)
24 PRK15370 E3 ubiquitin-protein 98.6 3.1E-08 6.7E-13 110.5 5.6 95 426-532 306-400 (754)
25 PRK15387 E3 ubiquitin-protein 98.5 1.7E-07 3.6E-12 104.3 7.8 54 309-377 226-279 (788)
26 KOG4237 Extracellular matrix p 98.5 4.6E-08 9.9E-13 97.4 1.2 91 442-533 268-359 (498)
27 PF13855 LRR_8: Leucine rich r 98.4 1.7E-07 3.6E-12 70.5 3.3 59 472-532 2-61 (61)
28 PF13855 LRR_8: Leucine rich r 98.4 2.6E-07 5.7E-12 69.5 3.6 58 449-507 2-61 (61)
29 PLN03210 Resistant to P. syrin 98.3 1.4E-06 3.1E-11 103.2 9.7 101 424-529 778-878 (1153)
30 PLN03210 Resistant to P. syrin 98.3 1.5E-06 3.2E-11 103.0 7.9 34 425-458 658-691 (1153)
31 COG4886 Leucine-rich repeat (L 98.3 5.1E-07 1.1E-11 94.6 3.4 170 336-532 118-289 (394)
32 KOG1259 Nischarin, modulator o 98.2 1.4E-07 3E-12 90.9 -1.0 117 410-533 293-412 (490)
33 KOG1259 Nischarin, modulator o 98.2 2.3E-07 4.9E-12 89.4 0.3 101 425-532 285-386 (490)
34 cd00116 LRR_RI Leucine-rich re 98.2 1.7E-06 3.7E-11 87.6 5.2 108 425-533 166-291 (319)
35 PF14580 LRR_9: Leucine-rich r 98.1 2.3E-06 5E-11 78.5 4.5 83 444-532 15-100 (175)
36 KOG4579 Leucine-rich repeat (L 98.1 2.5E-07 5.5E-12 79.5 -1.7 85 426-514 55-141 (177)
37 cd00116 LRR_RI Leucine-rich re 98.1 1.5E-06 3.2E-11 88.0 2.1 108 424-532 108-233 (319)
38 KOG4237 Extracellular matrix p 98.0 9.6E-07 2.1E-11 88.2 -0.4 118 411-531 49-175 (498)
39 KOG1859 Leucine-rich repeat pr 98.0 1.8E-07 3.9E-12 99.6 -5.9 106 422-533 185-292 (1096)
40 COG4886 Leucine-rich repeat (L 97.9 2.7E-06 5.8E-11 89.2 1.4 151 360-533 116-268 (394)
41 KOG4579 Leucine-rich repeat (L 97.8 1.4E-06 3E-11 75.0 -2.6 102 426-532 29-135 (177)
42 PF12799 LRR_4: Leucine Rich r 97.8 1.4E-05 3E-10 55.6 2.8 40 471-512 1-40 (44)
43 PF12799 LRR_4: Leucine Rich r 97.5 9.8E-05 2.1E-09 51.4 3.1 37 495-533 1-37 (44)
44 KOG1859 Leucine-rich repeat pr 97.4 9.6E-06 2.1E-10 86.8 -4.1 100 426-532 166-266 (1096)
45 KOG4658 Apoptotic ATPase [Sign 97.3 0.00014 3.1E-09 82.8 2.8 103 425-529 546-651 (889)
46 KOG3207 Beta-tubulin folding c 97.1 6.5E-05 1.4E-09 76.3 -1.4 108 422-532 144-258 (505)
47 KOG0531 Protein phosphatase 1, 97.1 0.00023 5E-09 75.1 1.7 103 423-532 94-198 (414)
48 KOG4658 Apoptotic ATPase [Sign 96.8 0.00087 1.9E-08 76.6 3.7 83 423-506 570-653 (889)
49 KOG0531 Protein phosphatase 1, 96.8 0.00028 6E-09 74.5 -0.4 100 426-532 74-174 (414)
50 KOG1644 U2-associated snRNP A' 96.5 0.0026 5.5E-08 58.8 4.0 99 425-529 43-149 (233)
51 KOG3207 Beta-tubulin folding c 96.4 0.0004 8.6E-09 70.8 -2.2 106 422-532 195-313 (505)
52 KOG1644 U2-associated snRNP A' 95.9 0.012 2.7E-07 54.4 4.9 82 448-533 42-126 (233)
53 KOG1909 Ran GTPase-activating 95.8 0.0047 1E-07 61.5 2.0 184 335-532 93-310 (382)
54 PF08263 LRRNT_2: Leucine rich 95.5 0.021 4.6E-07 39.3 3.8 36 376-416 2-43 (43)
55 PRK15386 type III secretion pr 95.4 0.036 7.8E-07 57.5 6.9 50 425-482 73-123 (426)
56 PRK15386 type III secretion pr 95.2 0.031 6.7E-07 58.0 5.8 30 424-460 94-124 (426)
57 PF00560 LRR_1: Leucine Rich R 95.0 0.011 2.4E-07 34.3 1.0 19 473-492 2-20 (22)
58 KOG2982 Uncharacterized conser 94.9 0.0082 1.8E-07 58.6 0.3 72 409-483 85-158 (418)
59 KOG2739 Leucine-rich acidic nu 94.4 0.018 4E-07 55.3 1.4 96 426-526 45-149 (260)
60 KOG1909 Ran GTPase-activating 94.3 0.031 6.6E-07 55.9 2.8 36 426-461 94-133 (382)
61 KOG3593 Predicted receptor-lik 94.1 0.059 1.3E-06 52.1 4.2 65 261-327 107-173 (355)
62 KOG2739 Leucine-rich acidic nu 93.9 0.041 8.8E-07 52.9 2.6 83 444-531 39-127 (260)
63 KOG0473 Leucine-rich repeat pr 93.8 0.0013 2.9E-08 61.8 -7.3 84 423-509 41-125 (326)
64 COG5238 RNA1 Ran GTPase-activa 93.7 0.11 2.4E-06 50.4 5.2 37 425-461 93-133 (388)
65 PF00560 LRR_1: Leucine Rich R 93.7 0.024 5.2E-07 32.9 0.4 21 496-517 1-21 (22)
66 KOG3665 ZYG-1-like serine/thre 93.4 0.025 5.5E-07 63.2 0.5 106 422-532 146-262 (699)
67 KOG3593 Predicted receptor-lik 93.0 0.06 1.3E-06 52.0 2.2 141 19-165 49-197 (355)
68 KOG3665 ZYG-1-like serine/thre 93.0 0.071 1.5E-06 59.7 3.1 94 422-517 171-272 (699)
69 KOG0473 Leucine-rich repeat pr 92.2 0.0054 1.2E-07 57.8 -5.8 87 442-532 36-123 (326)
70 KOG2982 Uncharacterized conser 91.6 0.044 9.5E-07 53.7 -0.6 85 424-508 71-159 (418)
71 PF13504 LRR_7: Leucine rich r 90.8 0.13 2.8E-06 27.8 1.1 13 496-508 2-14 (17)
72 smart00370 LRR Leucine-rich re 90.5 0.19 4.2E-06 30.2 1.8 23 494-517 1-23 (26)
73 smart00369 LRR_TYP Leucine-ric 90.5 0.19 4.2E-06 30.2 1.8 23 494-517 1-23 (26)
74 KOG2123 Uncharacterized conser 89.9 0.03 6.6E-07 54.3 -3.3 64 446-512 39-105 (388)
75 PF13504 LRR_7: Leucine rich r 89.4 0.24 5.1E-06 26.7 1.4 12 450-461 3-14 (17)
76 PF13306 LRR_5: Leucine rich r 89.0 1.1 2.4E-05 38.3 6.1 98 426-530 14-113 (129)
77 KOG2120 SCF ubiquitin ligase, 86.5 0.03 6.4E-07 54.9 -5.7 84 425-508 186-273 (419)
78 smart00370 LRR Leucine-rich re 86.1 0.59 1.3E-05 28.0 1.9 18 448-466 2-19 (26)
79 smart00369 LRR_TYP Leucine-ric 86.1 0.59 1.3E-05 28.0 1.9 18 448-466 2-19 (26)
80 KOG2123 Uncharacterized conser 85.3 0.054 1.2E-06 52.6 -4.6 80 447-533 18-101 (388)
81 COG5238 RNA1 Ran GTPase-activa 82.4 1.8 4E-05 42.2 4.4 66 442-508 86-170 (388)
82 PF13306 LRR_5: Leucine rich r 78.1 4.6 9.9E-05 34.3 5.2 84 442-530 6-91 (129)
83 PF13516 LRR_6: Leucine Rich r 77.7 0.82 1.8E-05 26.8 0.2 18 495-512 2-19 (24)
84 smart00364 LRR_BAC Leucine-ric 73.6 2.2 4.7E-05 25.8 1.3 16 473-489 4-19 (26)
85 KOG2120 SCF ubiquitin ligase, 66.3 0.3 6.5E-06 48.1 -5.5 83 448-531 185-271 (419)
86 KOG2230 Predicted beta-mannosi 64.1 1.4E+02 0.0031 32.4 13.0 122 240-366 28-159 (867)
87 KOG3763 mRNA export factor TAP 61.8 3.8 8.2E-05 43.9 1.2 63 446-511 216-286 (585)
88 PF15240 Pro-rich: Proline-ric 59.0 5.5 0.00012 36.3 1.6 17 8-24 1-17 (179)
89 smart00365 LRR_SD22 Leucine-ri 56.4 9.5 0.00021 23.1 1.8 14 448-461 2-15 (26)
90 KOG3864 Uncharacterized conser 49.0 2.3 4.9E-05 39.7 -2.6 81 425-505 102-186 (221)
91 smart00368 LRR_RI Leucine rich 46.9 16 0.00034 22.3 1.8 13 449-461 3-15 (28)
92 KOG3763 mRNA export factor TAP 41.8 11 0.00025 40.4 0.9 61 424-486 218-285 (585)
93 KOG1947 Leucine rich repeat pr 32.9 13 0.00029 39.3 -0.3 84 424-507 214-307 (482)
94 PRK06764 hypothetical protein; 32.5 39 0.00085 26.6 2.3 19 89-107 73-91 (105)
95 KOG3864 Uncharacterized conser 21.6 34 0.00074 32.2 0.3 11 495-505 151-161 (221)
96 CHL00108 psbJ photosystem II p 20.7 57 0.0012 21.8 1.1 15 104-118 24-38 (40)
97 PRK02565 photosystem II reacti 20.7 58 0.0013 21.6 1.1 14 105-118 24-37 (39)
98 KOG4308 LRR-containing protein 20.6 2.5 5.5E-05 45.3 -8.4 35 449-483 145-184 (478)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=9.2e-89 Score=744.24 Aligned_cols=500 Identities=37% Similarity=0.653 Sum_probs=418.1
Q ss_pred hhccCCCCccEEEccCCCCCC-CCCCCceEeeCCCceecCCcccccCCCCCCCCcCceeeecCCCCCCCcceEeecCCCc
Q 009515 22 LASSYPYKASYRIDCGSATST-TDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPG 100 (533)
Q Consensus 22 ~~~~~~~~~~~~IdCG~~~~~-~d~~~~~w~~Dd~~~~~g~~~~~~~~~~~~~~~y~t~R~f~~~~~~~~cY~l~~~~~~ 100 (533)
.+++.+.+++|+||||++++. +|.+||+|++|..+ +.|.....+.+ ....++|+|+|+||.++|+++||+||+.++|
T Consensus 16 ~~~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~-~~~~~~~~~~~-~~~~~~~~t~R~F~~~~g~~~cY~~~~~~~g 93 (623)
T PLN03150 16 ASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAY-TGGIPANATRP-SFIAPPLKTLRYFPLSDGPENCYNINRVPKG 93 (623)
T ss_pred cccccCCCccEEEeCCCCCCcccCCCCCEEcCCccc-ccCccccccCc-ccccchhhccccCCcccccccceEeeecCCC
Confidence 333445677799999999876 67899999997444 43433322222 2345789999999987789999999998999
Q ss_pred eEEEEEEeecCCCCCCCCCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEecCCeEEEEEeecCCCCceeeeEEEE
Q 009515 101 RYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQ 180 (533)
Q Consensus 101 ~ylvRl~F~~~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~~~~~~~pfIs~iEl~ 180 (533)
+|+||+||+|||||+.++.|.|||++|++.|.+....|.. ....++||+|+.++++.++|||+|++.++||||+||||
T Consensus 94 ~ylVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~--~~~~v~~E~i~~~~~~~l~vcf~~~~~~~pFIs~iEv~ 171 (623)
T PLN03150 94 HYSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSS--HDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEIL 171 (623)
T ss_pred cEEEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCccc--CCCcEEEEEEEEecCCcEEEEEecCCCCCCceeEEEEE
Confidence 9999999999999998889999999999776664433322 23468899999999999999999999999999999999
Q ss_pred EcCCCCccccC-cCccceEEEEeeeccCCCCCCCCCcCCCCCC--CcccccCCCCCCCCCCCCceEeeecceecCCCCCC
Q 009515 181 QIDPLSYDAAT-IGNNHILVNYGRLTSGSNQWGPGFSNDADDF--GRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPP 257 (533)
Q Consensus 181 ~l~~~~y~~~~-~~~~~~l~~~~R~n~G~~~~~~~~~~~dD~~--dR~W~~d~~~~~~~~~~~~~~~~t~~~i~~~~~~~ 257 (533)
|+|+++|.... .+++.+|++++|+|||+......++|+||++ ||+|.+|..|..+ .+..+++...|+++...|
T Consensus 172 ~l~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~----~~~~~st~~~I~~~~~~~ 247 (623)
T PLN03150 172 QVDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSG----SDQAISTENVIKKASNAP 247 (623)
T ss_pred EcCcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCC----cccccccccccccccCCC
Confidence 99999996432 2346689999999999976555578999999 9999999887632 244566777787766667
Q ss_pred CCchHHHHHHhhccC---cceEEEEecCCCCcEEEEEEeeccccCcCCCceeEEEEEECCe-ecccccccccCCC-ccee
Q 009515 258 NYYPMKLYQTAIVSS---GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDIFNSVGS-FAAY 332 (533)
Q Consensus 258 ~~~P~~V~~TA~~~~---~~l~~~~~~~~~~~y~v~lhF~ei~~~~~~~~~R~F~I~ing~-~l~~~di~~~~~~-~~~~ 332 (533)
+.+|+.||||||++. .+++|.|+++++++|+|||||||++......++|+|+|++||+ .+.++|+....+. ..+.
T Consensus 248 ~~~P~~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~ 327 (623)
T PLN03150 248 NFYPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTAL 327 (623)
T ss_pred ccChHHHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccce
Confidence 779999999999984 4799999999999999999999998644566899999999998 5678888766654 5566
Q ss_pred eeeeeEeecCCceEEEEecccchh-hhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 009515 333 SWHYVAKNLSSTELTVKLVPVVGA-ALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (533)
Q Consensus 333 ~~~l~~l~l~~n~L~~~l~~~~~~-~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~ 411 (533)
++++.+. ..++.|+++|.|..++ |+|||+||+++.+.+..+.++|+.+|+.+|+.+..+...+|+++||.|.. +.|.
T Consensus 328 ~~~~~v~-~~~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~-~~w~ 405 (623)
T PLN03150 328 VLNKTVA-VSGRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQ-HPWS 405 (623)
T ss_pred EEEeEEe-ecCCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcc-cccc
Confidence 6555443 3457899999998776 99999999999998889999999999999998876544589999998765 6899
Q ss_pred ceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCcc
Q 009515 412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS 490 (533)
Q Consensus 412 gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~ 490 (533)
|+.|..........++.|+|++|++.|.+|..++.|++|+.|+|++|++.|.+|..++. ++|+.|+|++|+++|.+|+.
T Consensus 406 Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~ 485 (623)
T PLN03150 406 GADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485 (623)
T ss_pred cceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH
Confidence 99997543222346899999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred CCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCC
Q 009515 491 LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTP 531 (533)
Q Consensus 491 ~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~ 531 (533)
+++|++|+.|+|++|+++|.+|..++....++..+++++|+
T Consensus 486 l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 486 LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred HhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 99999999999999999999999998765457899999986
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=3.9e-62 Score=497.69 Aligned_cols=319 Identities=27% Similarity=0.469 Sum_probs=244.3
Q ss_pred EccCCCCCC---CC-CCCceEeeCCCceecCCcccccCC----CCCCCCcCceeeecCCCCCCCcceEeecC--CCceEE
Q 009515 34 IDCGSATST---TD-PFNTTWQADDRYYTSGATSIVSEP----LHFRFPHEKTLRYFPPSSGKKNCYIIPNL--PPGRYY 103 (533)
Q Consensus 34 IdCG~~~~~---~d-~~~~~w~~Dd~~~~~g~~~~~~~~----~~~~~~~y~t~R~f~~~~~~~~cY~l~~~--~~~~yl 103 (533)
||||++.+. +| .+||+|++|++|+.+|.+..++.. .....++|+|||+|| +|.|+||+||+. +++|||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~--~g~r~cY~l~~~~~~~~~yl 78 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFP--EGSRNCYTLPVTPPGGGKYL 78 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcC--CCCccEEEeeccCCCCceEE
Confidence 799998664 44 679999999988888887665321 134468999999999 477899999997 456999
Q ss_pred EEEEeecCCCCCCC-----CCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEec-CCeEEEEEeecCCCC-ceeee
Q 009515 104 IRTFTVYDNYDGKS-----HSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVK-DGELDLCFYSFATDP-PVIAS 176 (533)
Q Consensus 104 vRl~F~~~nyd~~~-----~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~-~~~l~v~~~~~~~~~-pfIs~ 176 (533)
|||||+|||||+++ +++.|||++|++.|.+..... ....+++||+++.+. ++.++|||+|++.|. |||||
T Consensus 79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~~~~---~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsa 155 (347)
T PF12819_consen 79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVNLSN---SPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISA 155 (347)
T ss_pred EEEEeccccccccccccccCCcceEEEECCceeEEEEecC---CCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeE
Confidence 99999999999864 257799999999864433211 112468999888887 799999999999887 99999
Q ss_pred EEEEEcCCCCccccCcCccceEEEEeeeccCCCCCCCCCcCCCCCCCcccccCCCCCCCCCCCCceEeeecceec-CCCC
Q 009515 177 LEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERIT-NTNQ 255 (533)
Q Consensus 177 iEl~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~dD~~dR~W~~d~~~~~~~~~~~~~~~~t~~~i~-~~~~ 255 (533)
|||||||+++|+.....++.+|++++|+|||+... .+||++|++||+|.+... ...|..++++..|+ ....
T Consensus 156 iEl~~lp~~ly~~~~~~~s~~L~~~~R~n~G~~~~--~iryp~D~~dR~W~~~~~------~~~~~~ist~~~i~~~~~~ 227 (347)
T PF12819_consen 156 IELRPLPDSLYPDTDANSSQALETVYRLNVGGSSS--FIRYPDDTYDRIWQPYSS------SPGWSNISTTSNININSSN 227 (347)
T ss_pred EEEEECCccceeccccCCCceeEEEEeecCCCccc--ccCCCCCcceeecccccc------CccccccccceeeecccCC
Confidence 99999999999543234678899999999998641 278999999999996521 13567777766676 3334
Q ss_pred CCCCchHHHHHHhhccC-----cceEEEEecCCCCcEEEEEEeeccccCcCCCceeEEEEEECCeecccccccc-cCCC-
Q 009515 256 PPNYYPMKLYQTAIVSS-----GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFN-SVGS- 328 (533)
Q Consensus 256 ~~~~~P~~V~~TA~~~~-----~~l~~~~~~~~~~~y~v~lhF~ei~~~~~~~~~R~F~I~ing~~l~~~di~~-~~~~- 328 (533)
.++.+|++|||||+++. .+++|.+ ++++..|+||||||||+......++|+|+|++||+...+ ++.. ..+.
T Consensus 228 ~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~-~~~~~~~~~~ 305 (347)
T PF12819_consen 228 NPYDAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYS-DVSPPYLGAD 305 (347)
T ss_pred ccCcChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccC-ccCcccccCc
Confidence 46679999999999992 3677777 888999999999999997655566899999999995543 4432 2222
Q ss_pred cceeeeeeeEeecCCceEEEEecccchh---hhhhccccccc
Q 009515 329 FAAYSWHYVAKNLSSTELTVKLVPVVGA---ALISGLENYAL 367 (533)
Q Consensus 329 ~~~~~~~l~~l~l~~n~L~~~l~~~~~~---~iLn~lEi~~l 367 (533)
..+.+.++.+....+..+.++|.++.++ |+|||+|||++
T Consensus 306 ~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v 347 (347)
T PF12819_consen 306 TVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV 347 (347)
T ss_pred ceEeecceEEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence 3344444444333445788899988776 99999999975
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.88 E-value=5.7e-22 Score=217.74 Aligned_cols=318 Identities=18% Similarity=0.254 Sum_probs=195.6
Q ss_pred EEEccCCCCCC--CC----CC--CceEeeCCCceecCC-----ccccc----CCCCCCCCcCceeeecCCCCCCCcceEe
Q 009515 32 YRIDCGSATST--TD----PF--NTTWQADDRYYTSGA-----TSIVS----EPLHFRFPHEKTLRYFPPSSGKKNCYII 94 (533)
Q Consensus 32 ~~IdCG~~~~~--~d----~~--~~~w~~Dd~~~~~g~-----~~~~~----~~~~~~~~~y~t~R~f~~~~~~~~cY~l 94 (533)
+|||||+.+.. .| .- .|.|.+|+.|..... ...+. .++..|..+|+|+|.+... ....+|++
T Consensus 194 ~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~-~~~lty~~ 272 (623)
T PLN03150 194 KRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLYQSALVSTDT-QPDLSYTM 272 (623)
T ss_pred EEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHhhhhccccCC-CCceEEEe
Confidence 59999986432 22 22 699999876543211 11111 1222355689999998752 24569999
Q ss_pred ecCCCceEEEEEEeecCCCC-CCCCCCceEEEECCEEEEeccCCCcccc-cCCceEEEEEEEecCCeEEEEEeecCCCCc
Q 009515 95 PNLPPGRYYIRTFTVYDNYD-GKSHSPSFDVSVEGTLVFSWRSPWPEGL-ARDGAYSDLFAFVKDGELDLCFYSFATDPP 172 (533)
Q Consensus 95 ~~~~~~~ylvRl~F~~~nyd-~~~~~~~Fdv~~~~~~~l~~~~~~~~~~-~~~~~~~e~i~~~~~~~l~v~~~~~~~~~p 172 (533)
++.+++.|+||+||..-... .....++|||++++..+++.+|+....+ ...++++++.+.+.++.+.|+|+|.....|
T Consensus 273 ~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~~g~l~isl~p~~~s~p 352 (623)
T PLN03150 273 DVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKKGTHA 352 (623)
T ss_pred ecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeecCCeEEEEEeeCCCCcc
Confidence 99888999999999644321 1224688999999999999888743222 235678899888878889999999876679
Q ss_pred eeeeEEEEEcCCCCccccCcCccceEEEEeeeccCCCCCCCCCcCCCCCCCcccccCCCCCCCCCCCCceEeeecceecC
Q 009515 173 VIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITN 252 (533)
Q Consensus 173 fIs~iEl~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~dD~~dR~W~~d~~~~~~~~~~~~~~~~t~~~i~~ 252 (533)
+||||||+.+...-..+. .....+|..+. -..+ +...--|..|.
T Consensus 353 ilNaiEI~~~~~~~~~t~-~~~~~aL~~~k-~~~~------------~~~~~~W~g~~---------------------- 396 (623)
T PLN03150 353 IINAIEVFEIITAESKTL-LEEVSALQTLK-SSLG------------LPLRFGWNGDP---------------------- 396 (623)
T ss_pred eeeeeeeeeccccccccC-chHHHHHHHHH-HhcC------------CcccCCCCCCC----------------------
Confidence 999999987754211000 00001111100 0000 00000121100
Q ss_pred CCCCCCCchHHHHHHhhccCcceEEEEecCCCCcEEEEEEeeccccCcCCCceeEEEEEECCeecccccccccCCCccee
Q 009515 253 TNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAY 332 (533)
Q Consensus 253 ~~~~~~~~P~~V~~TA~~~~~~l~~~~~~~~~~~y~v~lhF~ei~~~~~~~~~R~F~I~ing~~l~~~di~~~~~~~~~~ 332 (533)
.. |.. +.|. + | - |.... . .+
T Consensus 397 --C~----p~~-------------~~w~---G----v--~-C~~~~----------------~----------~~----- 416 (623)
T PLN03150 397 --CV----PQQ-------------HPWS---G----A--D-CQFDS----------------T----------KG----- 416 (623)
T ss_pred --CC----Ccc-------------cccc---c----c--e-eeccC----------------C----------CC-----
Confidence 00 000 0000 0 0 0 00000 0 00
Q ss_pred eeeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcc
Q 009515 333 SWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (533)
Q Consensus 333 ~~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~g 412 (533)
...+..++|++|.|.+.+|+.+.
T Consensus 417 ~~~v~~L~L~~n~L~g~ip~~i~--------------------------------------------------------- 439 (623)
T PLN03150 417 KWFIDGLGLDNQGLRGFIPNDIS--------------------------------------------------------- 439 (623)
T ss_pred ceEEEEEECCCCCccccCCHHHh---------------------------------------------------------
Confidence 00123344455544332221111
Q ss_pred eeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccC
Q 009515 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL 491 (533)
Q Consensus 413 v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~ 491 (533)
.+..|+.|+|++|.+.|.+|+.++.+++|+.|+|++|+++|.+|+.++. ++|+.|+|++|+++|.+|..+
T Consensus 440 ---------~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 440 ---------KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred ---------CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence 1123778999999999999999999999999999999999999999998 999999999999999999988
Q ss_pred CCC-cCCCEEEeecccCcccCc
Q 009515 492 TSS-SKLQLVLLNNNLLEGRVP 512 (533)
Q Consensus 492 ~~l-~~L~~L~L~~N~l~g~lP 512 (533)
+.+ .++..+++.+|......|
T Consensus 511 ~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 511 GGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred hhccccCceEEecCCccccCCC
Confidence 764 467788999887654444
No 4
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.67 E-value=8.7e-17 Score=148.15 Aligned_cols=141 Identities=28% Similarity=0.401 Sum_probs=90.3
Q ss_pred cEEEccCCCCCCCCCCCceEeeCCCceecCCcc------------cccC--CCCCCCCcCceeeecCCCCCCCcceEeec
Q 009515 31 SYRIDCGSATSTTDPFNTTWQADDRYYTSGATS------------IVSE--PLHFRFPHEKTLRYFPPSSGKKNCYIIPN 96 (533)
Q Consensus 31 ~~~IdCG~~~~~~d~~~~~w~~Dd~~~~~g~~~------------~~~~--~~~~~~~~y~t~R~f~~~~~~~~cY~l~~ 96 (533)
.++||||++.. +|..|..|.+| .++.+|... .... ..+..+.+|+|.|+-+. .+.|.||+
T Consensus 2 ~~~IN~Gg~~~-~~~~g~~w~~D-~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~ 75 (174)
T PF11721_consen 2 VLRINAGGPAY-TDSSGIVWEAD-QYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPV 75 (174)
T ss_dssp EEEEEETSSSE-EETTTEEE-SS-SSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE-
T ss_pred EEEEECCCCcc-cCCCCCEEcCC-CCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEec
Confidence 37999999865 77899999995 444433330 0001 11223579999999764 28999997
Q ss_pred CCCceEEEEEEeecCCCCC-----CCCCCceEEEECCEEEEeccCCCcccccCC-ceEEEE-EEEecCCeEEEEEee---
Q 009515 97 LPPGRYYIRTFTVYDNYDG-----KSHSPSFDVSVEGTLVFSWRSPWPEGLARD-GAYSDL-FAFVKDGELDLCFYS--- 166 (533)
Q Consensus 97 ~~~~~ylvRl~F~~~nyd~-----~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~-~~~~e~-i~~~~~~~l~v~~~~--- 166 (533)
.+.|.|.|||||....+.. ....++|||+++|..+++++|++.+++... ++++++ -+.+.++.|.|+|..
T Consensus 76 ~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~~~ 155 (174)
T PF11721_consen 76 VPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWAGK 155 (174)
T ss_dssp -S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE--
T ss_pred CCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEecCC
Confidence 7999999999995432222 123789999999999999999988876554 677777 446799999999996
Q ss_pred --------cCCCCceeeeE
Q 009515 167 --------FATDPPVIASL 177 (533)
Q Consensus 167 --------~~~~~pfIs~i 177 (533)
...+.|.||||
T Consensus 156 ~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 156 GTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp SEEEEEEESSSSSSSEEEE
T ss_pred CcEEeeccccCCCcEEeeC
Confidence 44566888886
No 5
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.65 E-value=9.7e-17 Score=147.82 Aligned_cols=143 Identities=24% Similarity=0.384 Sum_probs=84.8
Q ss_pred EeeeccCCCCCCCCCcCCCCCCCcccccCCCCCCCCCCCCceEee-ecceecCCCCCCCCchHHHHHHhhccCcceEEEE
Q 009515 201 YGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVT-TRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNL 279 (533)
Q Consensus 201 ~~R~n~G~~~~~~~~~~~dD~~dR~W~~d~~~~~~~~~~~~~~~~-t~~~i~~~~~~~~~~P~~V~~TA~~~~~~l~~~~ 279 (533)
++|||||+.. + +|..++.|.+|+.|..+.+. -..... ...........+...+..+|||+|.....++|.+
T Consensus 2 ~~~IN~Gg~~------~-~~~~g~~w~~D~~~~~g~~~-y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~~f~Y~i 73 (174)
T PF11721_consen 2 VLRINAGGPA------Y-TDSSGIVWEADQYYTGGSWG-YYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPSSFSYDI 73 (174)
T ss_dssp EEEEEETSSS------E-EETTTEEE-SSSSSTTSS------------SSTTS--TTS-HHHHHTTT-----SSSEEEEE
T ss_pred EEEEECCCCc------c-cCCCCCEEcCCCCCCCCCcc-cccccccccccccccccccCCCchhhhHhhcCCCCceEEEE
Confidence 5799999875 2 57789999999988754440 000000 0000111111223357799999997544799999
Q ss_pred ecCCCCcEEEEEEeeccccCc----CCCceeEEEEEECCe-ecccccccccCCCcc-eeeeeeeEeecCCceEEEEec
Q 009515 280 AVDAKLDYLIWFHFAEIDSSV----TKAGQRVFDILVNDK-NVTRVDIFNSVGSFA-AYSWHYVAKNLSSTELTVKLV 351 (533)
Q Consensus 280 ~~~~~~~y~v~lhF~ei~~~~----~~~~~R~F~I~ing~-~l~~~di~~~~~~~~-~~~~~l~~l~l~~n~L~~~l~ 351 (533)
|+.+++.|.|+|||+|+.... ...++|+|||++||+ .+.++||+..+|... +....+......++.|.+.|.
T Consensus 74 p~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~ 151 (174)
T PF11721_consen 74 PVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFV 151 (174)
T ss_dssp E--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEE
T ss_pred ecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEE
Confidence 976789999999999998643 236899999999998 789999999887743 555555344456777877776
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.49 E-value=1.7e-13 Score=159.71 Aligned_cols=147 Identities=30% Similarity=0.498 Sum_probs=98.7
Q ss_pred ChhHHHHHHHHHHhcCCCC--CCCCCC-CCCCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCC
Q 009515 375 VPEQVIAMRALKESLRVPD--RMGWNG-DPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLV 451 (533)
Q Consensus 375 ~p~~~~~l~~lk~~~~~~~--~~~w~g-dpc~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~ 451 (533)
.|+|..+|.++|+.+..+. ..+|+. +.| |.|.|+.|... .+++.|+|++|++.|.++..+..+++|+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~-----c~w~gv~c~~~-----~~v~~L~L~~~~i~~~~~~~~~~l~~L~ 96 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADV-----CLWQGITCNNS-----SRVVSIDLSGKNISGKISSAIFRLPYIQ 96 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCC-----CcCcceecCCC-----CcEEEEEecCCCccccCChHHhCCCCCC
Confidence 6789999999999885432 246853 455 79999999742 2467777777777777777777777777
Q ss_pred EEEccCCCCCCCCCCccC-C-CCccEEEccCCc----------------------cccCCCccCCCCcCCCEEEeecccC
Q 009515 452 NLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQ----------------------FTGSIPDSLTSSSKLQLVLLNNNLL 507 (533)
Q Consensus 452 ~L~Ls~N~l~g~iP~~l~-~-~~L~~L~Ls~N~----------------------l~g~iP~~~~~l~~L~~L~L~~N~l 507 (533)
.|+|++|+++|.+|..+. . ++|++|+|++|+ +++.+|..++.+++|++|+|++|.+
T Consensus 97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 777777777766666554 3 555555555554 4455555566666666666666666
Q ss_pred cccCchhHHhcccCCcEEEccCCCC
Q 009515 508 EGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 508 ~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
.+.+|..++++.. |++|+|++|.+
T Consensus 177 ~~~~p~~~~~l~~-L~~L~L~~n~l 200 (968)
T PLN00113 177 VGKIPNSLTNLTS-LEFLTLASNQL 200 (968)
T ss_pred cccCChhhhhCcC-CCeeeccCCCC
Confidence 6666666666554 66676666654
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.47 E-value=5.7e-14 Score=163.79 Aligned_cols=109 Identities=31% Similarity=0.478 Sum_probs=103.3
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L 502 (533)
..|+.|+|++|++.+.+|..+.++++|+.|++++|++.|.+|..+.. ++|+.|+|++|+++|.+|..++.+++|+.|+|
T Consensus 475 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 45899999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred ecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
++|+++|.+|..+..+.. |+.|++++|++.
T Consensus 555 s~N~l~~~~p~~l~~l~~-L~~l~ls~N~l~ 584 (968)
T PLN00113 555 SQNQLSGEIPKNLGNVES-LVQVNISHNHLH 584 (968)
T ss_pred CCCcccccCChhHhcCcc-cCEEeccCCcce
Confidence 999999999999998876 999999999863
No 8
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=2.1e-14 Score=126.80 Aligned_cols=172 Identities=22% Similarity=0.353 Sum_probs=141.7
Q ss_pred eeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcceee
Q 009515 336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC 415 (533)
Q Consensus 336 l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~c 415 (533)
.+.+.++.|+++ .+||.+.. |..+|++.+.+|++..+|..+..|.++|..- +. ...+.-
T Consensus 35 ITrLtLSHNKl~-~vppnia~--l~nlevln~~nnqie~lp~~issl~klr~ln-vg-----------------mnrl~~ 93 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAE--LKNLEVLNLSNNQIEELPTSISSLPKLRILN-VG-----------------MNRLNI 93 (264)
T ss_pred hhhhhcccCcee-ecCCcHHH--hhhhhhhhcccchhhhcChhhhhchhhhhee-cc-----------------hhhhhc
Confidence 455678999999 78888887 8999999999999999999999999997642 21 112222
Q ss_pred cCCCCCceeEEEEEEeCCCCCc-cccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCC
Q 009515 416 HPNKDETAVVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (533)
Q Consensus 416 ~~~~~~~~~~L~~L~Ls~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~ 493 (533)
.+...+..+.|+.|||+.|++. ..+|..|..|+.|+-|+|+.|.+. .+|+.+++ ++|+.|.+..|.+- ++|.+++.
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~ 171 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD 171 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH
Confidence 2344455677999999999987 468999999999999999999998 99999999 99999999999999 89999999
Q ss_pred CcCCCEEEeecccCcccCchhHHhccc--CCcEEEccCCC
Q 009515 494 SSKLQLVLLNNNLLEGRVPEELYSIGV--HGGAFEYVKTP 531 (533)
Q Consensus 494 l~~L~~L~L~~N~l~g~lP~~l~~l~~--~L~~L~ls~N~ 531 (533)
|..|++|++.+|+++ .+|++++.+.. +-+.+.+.+|+
T Consensus 172 lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NP 210 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENP 210 (264)
T ss_pred HHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCC
Confidence 999999999999999 99999987642 12344555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.36 E-value=1e-13 Score=143.41 Aligned_cols=172 Identities=21% Similarity=0.303 Sum_probs=141.0
Q ss_pred eEeecCCceEE-EEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcceee
Q 009515 337 VAKNLSSTELT-VKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC 415 (533)
Q Consensus 337 ~~l~l~~n~L~-~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~c 415 (533)
+-+++++|.++ ..||..... +..+.-+++....+..+|+++.++.+|..+-...+. +.-
T Consensus 10 rGvDfsgNDFsg~~FP~~v~q--Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~------------------L~~ 69 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQ--MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ------------------LIS 69 (1255)
T ss_pred ecccccCCcCCCCcCchhHHH--hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh------------------hHh
Confidence 34567888888 577777776 888899999999999999999999999764322111 111
Q ss_pred cCCCCCceeEEEEEEeCCCCCcc-ccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCcc-CC
Q 009515 416 HPNKDETAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS-LT 492 (533)
Q Consensus 416 ~~~~~~~~~~L~~L~Ls~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~-~~ 492 (533)
.......+++|+.+.+..|++.. -+|+.+..|..|..||||+|+|. ++|..+.. +++-+|+||+|++. .||.. +.
T Consensus 70 vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfi 147 (1255)
T KOG0444|consen 70 VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFI 147 (1255)
T ss_pred hhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHH
Confidence 11223345568888999999863 58999999999999999999999 99999998 99999999999999 88876 56
Q ss_pred CCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 493 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 493 ~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+|..|-.|||++|++. .+|+.+.++.. |++|+|++|+|
T Consensus 148 nLtDLLfLDLS~NrLe-~LPPQ~RRL~~-LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 148 NLTDLLFLDLSNNRLE-MLPPQIRRLSM-LQTLKLSNNPL 185 (1255)
T ss_pred hhHhHhhhccccchhh-hcCHHHHHHhh-hhhhhcCCChh
Confidence 8999999999999999 99999999876 99999999986
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.32 E-value=9.7e-14 Score=137.22 Aligned_cols=189 Identities=19% Similarity=0.238 Sum_probs=113.6
Q ss_pred eeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCC---CCCCCCCCCCC--CCC
Q 009515 336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMG---WNGDPCAPTNW--DAW 410 (533)
Q Consensus 336 l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~---w~gdpc~~~~~--~~w 410 (533)
++++++.+|++. ++|+.++. +.++.-+.++.+.++.+|+++..+..+++..-..+..- -...-|..... ..-
T Consensus 70 l~vl~~~~n~l~-~lp~aig~--l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 70 LTVLNVHDNKLS-QLPAAIGE--LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATN 146 (565)
T ss_pred eeEEEeccchhh-hCCHHHHH--HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccc
Confidence 566777777777 77777776 55666666666667777777776666665432211100 00000000000 000
Q ss_pred cc--------eeec---------------CCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc
Q 009515 411 EG--------ITCH---------------PNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG 467 (533)
Q Consensus 411 ~g--------v~c~---------------~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~ 467 (533)
+. +.|. +...-...+|++||..+|-+. .+|+.++.|.+|+.|+|..|++. .+| +
T Consensus 147 N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-e 223 (565)
T KOG0472|consen 147 NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-E 223 (565)
T ss_pred cccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-C
Confidence 00 0110 000011234666666666665 67777777777777777777776 666 4
Q ss_pred cCC-CCccEEEccCCccccCCCccCC-CCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 468 LGQ-QSLVRLDLSDNQFTGSIPDSLT-SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 468 l~~-~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
|.. ..|.+|+++.|+++ .+|.+++ ++.+|.+|||..|+++ ++|.+++.+.. |..||+|+|.++
T Consensus 224 f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs-L~rLDlSNN~is 288 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS-LERLDLSNNDIS 288 (565)
T ss_pred CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhh-hhhhcccCCccc
Confidence 555 66777777777777 6776655 6778888888888888 78888887765 888888888764
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.22 E-value=1.8e-12 Score=133.60 Aligned_cols=187 Identities=20% Similarity=0.214 Sum_probs=122.3
Q ss_pred eeeEeecCCceEEEEecc-cchhhhhhccccccccCCCCCCChhHHHH-HHHHHHhcCCCCC------CCCCCCCCCCCC
Q 009515 335 HYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPNDLSTVPEQVIA-MRALKESLRVPDR------MGWNGDPCAPTN 406 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~-~~~~~iLn~lEi~~l~~~~~~~~p~~~~~-l~~lk~~~~~~~~------~~w~gdpc~~~~ 406 (533)
.+..++|++|.++ .+.. ...+ +|.+-.++++.|.++++|.-+.. |.+|+.+-...+. ..++|-|-
T Consensus 174 ni~~L~La~N~It-~l~~~~F~~--lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~S---- 246 (873)
T KOG4194|consen 174 NIKKLNLASNRIT-TLETGHFDS--LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPS---- 246 (873)
T ss_pred CceEEeecccccc-ccccccccc--cchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchh----
Confidence 5677888888877 3332 3344 88888889999999999987666 7777654221111 01122111
Q ss_pred CCCCcceeecCCCC--------CceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEE
Q 009515 407 WDAWEGITCHPNKD--------ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLD 477 (533)
Q Consensus 407 ~~~w~gv~c~~~~~--------~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~ 477 (533)
...+.-..+++ -.+..+++|+|..|++...-...+.+|++|+.|+||.|.+...-++.|.. ++|++|+
T Consensus 247 ---l~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld 323 (873)
T KOG4194|consen 247 ---LQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD 323 (873)
T ss_pred ---hhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEe
Confidence 11111111111 12345788888888888777777888888888888888888667778877 8888888
Q ss_pred ccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 478 LSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 478 Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
|++|+++.--++++..|..|+.|+|+.|.+. .+-+.-+...++|++|||++|.|
T Consensus 324 Ls~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~l 377 (873)
T KOG4194|consen 324 LSSNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNEL 377 (873)
T ss_pred ccccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeE
Confidence 8888888444456667777777777777776 56555555555577777777655
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.21 E-value=1.3e-12 Score=135.46 Aligned_cols=193 Identities=23% Similarity=0.249 Sum_probs=106.3
Q ss_pred eeeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCC---CCCCCCC-CCCC
Q 009515 333 SWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGW---NGDPCAP-TNWD 408 (533)
Q Consensus 333 ~~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w---~gdpc~~-~~~~ 408 (533)
.+...+++++.|++. ++|...- .-|..+-.++++.|.+.++|+++..|..|+.+-...++... ..-|..- ....
T Consensus 125 AKn~iVLNLS~N~Ie-tIPn~lf-inLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 125 AKNSIVLNLSYNNIE-TIPNSLF-INLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred hcCcEEEEcccCccc-cCCchHH-HhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 345566777777776 5554332 11445556788899999999999998888764322111100 0001000 0000
Q ss_pred CCcc----eeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCcc
Q 009515 409 AWEG----ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF 483 (533)
Q Consensus 409 ~w~g----v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l 483 (533)
...+ +.-.+..+..+.+|..++|+.|.+. .+|+.+-++.+|+.|+||+|+++ .+-...+. .+|+.|+||.|+|
T Consensus 203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQL 280 (1255)
T ss_pred hcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchh
Confidence 0000 0001122233445666777777776 66777777777777777777666 55444444 6666666666666
Q ss_pred ccCCCccCCCCcCC-------------------------CEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 484 TGSIPDSLTSSSKL-------------------------QLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 484 ~g~iP~~~~~l~~L-------------------------~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+ .+|+.+.+|++| +.+..++|+++ -+|..++++.+ |+.|.|++|.|
T Consensus 281 t-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~k-L~kL~L~~NrL 351 (1255)
T KOG0444|consen 281 T-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVK-LQKLKLDHNRL 351 (1255)
T ss_pred c-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHH-HHHhcccccce
Confidence 6 555555555554 44455555555 55666666665 66666666654
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.16 E-value=6.3e-12 Score=124.56 Aligned_cols=175 Identities=23% Similarity=0.247 Sum_probs=133.6
Q ss_pred eeeEeecCCceEEEEecccchh-hhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCC-CCCCCCCCCCCCCCCCcc
Q 009515 335 HYVAKNLSSTELTVKLVPVVGA-ALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDR-MGWNGDPCAPTNWDAWEG 412 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~-~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~-~~w~gdpc~~~~~~~w~g 412 (533)
..+.+++++-+++ .+|..+-. +-=+.+.+..++.|++.++|.++..+..+...+...++ .+|.+.
T Consensus 363 ~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~------------ 429 (565)
T KOG0472|consen 363 TTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPL------------ 429 (565)
T ss_pred hhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchH------------
Confidence 3445556666665 44443322 22234556677888999999999999888776655432 345321
Q ss_pred eeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCc-c
Q 009515 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD-S 490 (533)
Q Consensus 413 v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~-~ 490 (533)
..| .+.+++-|+|++|-+. .+|.+++.+..|+.|++|.|++. .+|..+-. ..|+.+-.++|++. .+|. .
T Consensus 430 ~l~------~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~-~vd~~~ 500 (565)
T KOG0472|consen 430 ELS------QLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG-SVDPSG 500 (565)
T ss_pred HHH------hhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc-ccChHH
Confidence 112 2345778999999887 89999999999999999999998 89988877 77888777788888 5555 4
Q ss_pred CCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 491 LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 491 ~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
+++|.+|..|||.+|.+. .+|+.++++.. |++|++.+|+|+
T Consensus 501 l~nm~nL~tLDL~nNdlq-~IPp~Lgnmtn-L~hLeL~gNpfr 541 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQ-QIPPILGNMTN-LRHLELDGNPFR 541 (565)
T ss_pred hhhhhhcceeccCCCchh-hCChhhccccc-eeEEEecCCccC
Confidence 999999999999999999 99999999887 999999999985
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.06 E-value=1.2e-11 Score=109.50 Aligned_cols=150 Identities=21% Similarity=0.310 Sum_probs=123.2
Q ss_pred ccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCcccc
Q 009515 361 GLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYI 440 (533)
Q Consensus 361 ~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~ 440 (533)
.+.-+.++.|.+..+|+.++.|..+... .. |+. .+.-.+..++.++.|+.|+++-|.+. .+
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevl-n~-----~nn------------qie~lp~~issl~klr~lnvgmnrl~-~l 94 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVL-NL-----SNN------------QIEELPTSISSLPKLRILNVGMNRLN-IL 94 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhh-hc-----ccc------------hhhhcChhhhhchhhhheecchhhhh-cC
Confidence 3444677888899999999999888543 22 211 11222334455677999999999998 88
Q ss_pred chhhhccCCCCEEEccCCCCCC-CCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhc
Q 009515 441 SDKISLLSNLVNLNLSTNSLGG-TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI 518 (533)
Q Consensus 441 p~~l~~L~~L~~L~Ls~N~l~g-~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l 518 (533)
|..|+.++.|+.|||+.|++.. .+|..+.. ..|+.|+|+.|.+. .+|..+++|++|+.|.+..|.+. ++|++++.+
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~l 172 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDL 172 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHH
Confidence 9999999999999999999974 47777777 88999999999999 89999999999999999999999 999999999
Q ss_pred ccCCcEEEccCCCC
Q 009515 519 GVHGGAFEYVKTPN 532 (533)
Q Consensus 519 ~~~L~~L~ls~N~l 532 (533)
.+ |+.|.+.+|.+
T Consensus 173 t~-lrelhiqgnrl 185 (264)
T KOG0617|consen 173 TR-LRELHIQGNRL 185 (264)
T ss_pred HH-HHHHhccccee
Confidence 88 99999999975
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.97 E-value=1.3e-10 Score=126.11 Aligned_cols=174 Identities=26% Similarity=0.297 Sum_probs=123.3
Q ss_pred eeeeEeecCCceEEEEecccchhhhhhc-cccccccCCCCCCChhHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 009515 334 WHYVAKNLSSTELTVKLVPVVGAALISG-LENYALVPNDLSTVPEQV-IAMRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (533)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~-lEi~~l~~~~~~~~p~~~-~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~ 411 (533)
..++.+++..|+|. .+|+..- .++++ ++.+..+.+.++++|.-- ..+..+..++.. + +.-+|.|. .
T Consensus 310 ~sL~tLdL~~N~L~-~lp~~~l-~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyla-n--N~Ltd~c~-------p 377 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLP-SLPDNFL-AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLA-N--NHLTDSCF-------P 377 (1081)
T ss_pred ceeeeeeehhcccc-ccchHHH-hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHh-c--Ccccccch-------h
Confidence 35677777777776 6666322 33444 566666666666555211 112222222322 1 23345553 3
Q ss_pred ceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCcc
Q 009515 412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS 490 (533)
Q Consensus 412 gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~ 490 (533)
-+.|. ..|+.|+|++|.|.......+.++..|+.|+||+|+|+ .+|..+.. ..|++|...+|++. .+| +
T Consensus 378 ~l~~~-------~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e 447 (1081)
T KOG0618|consen 378 VLVNF-------KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-E 447 (1081)
T ss_pred hhccc-------cceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-h
Confidence 33332 35999999999999666667899999999999999999 99999998 99999999999999 899 7
Q ss_pred CCCCcCCCEEEeecccCc-ccCchhHHhcccCCcEEEccCCC
Q 009515 491 LTSSSKLQLVLLNNNLLE-GRVPEELYSIGVHGGAFEYVKTP 531 (533)
Q Consensus 491 ~~~l~~L~~L~L~~N~l~-g~lP~~l~~l~~~L~~L~ls~N~ 531 (533)
+.+++.|+.+|++.|+++ +.+|...-. ..|++|||++|.
T Consensus 448 ~~~l~qL~~lDlS~N~L~~~~l~~~~p~--p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 448 LAQLPQLKVLDLSCNNLSEVTLPEALPS--PNLKYLDLSGNT 487 (1081)
T ss_pred hhhcCcceEEecccchhhhhhhhhhCCC--cccceeeccCCc
Confidence 899999999999999997 344443321 459999999995
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.97 E-value=1.1e-10 Score=126.43 Aligned_cols=192 Identities=19% Similarity=0.265 Sum_probs=134.3
Q ss_pred eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCC---------------
Q 009515 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWN--------------- 398 (533)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~--------------- 398 (533)
..+..++++.|+++ .+|.-++. +..+|.+++..|.+..+|.++..+.+++.+...-+.....
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~--~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGA--CANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHh--cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeee
Confidence 35667777778777 55643444 6677888888888888898888888876643111100000
Q ss_pred ---CCCCCCCCCC-------CCcceeecCCC------CCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCC
Q 009515 399 ---GDPCAPTNWD-------AWEGITCHPNK------DETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG 462 (533)
Q Consensus 399 ---gdpc~~~~~~-------~w~gv~c~~~~------~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g 462 (533)
.-+-.|.... ..-++.|..-. ......|+.|.+.+|.|+..+-+.+.+..+|+.|+|+.|+|.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~- 396 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN- 396 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-
Confidence 0000010000 00111111100 012234667788888888888888999999999999999998
Q ss_pred CCCCccCC--CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 463 TLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 463 ~iP~~l~~--~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
.+|+..-. ..|+.|+||+|+|+ .+|.++..+..|++|...+|++. .+| ++..+.. |+.+|+|.|+|+
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~q-L~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQ-LKVLDLSCNNLS 465 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCc-ceEEecccchhh
Confidence 88876554 89999999999999 99999999999999999999999 899 7888877 999999999874
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=8.1e-11 Score=121.46 Aligned_cols=192 Identities=21% Similarity=0.306 Sum_probs=145.4
Q ss_pred EEEECCeecccccccccCCCcceeeeeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHh
Q 009515 309 DILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKES 388 (533)
Q Consensus 309 ~I~ing~~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~ 388 (533)
.+.++|..+..|+. +.......+-+..+++.|++. .+|..... +..+|.+-+..|.+.++|+.+..|.++.-.
T Consensus 54 ~l~Ls~rrlk~fpr----~a~~~~ltdt~~aDlsrNR~~-elp~~~~~--f~~Le~liLy~n~~r~ip~~i~~L~~lt~l 126 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPR----GAASYDLTDTVFADLSRNRFS-ELPEEACA--FVSLESLILYHNCIRTIPEAICNLEALTFL 126 (722)
T ss_pred ccccccchhhcCCC----ccccccccchhhhhccccccc-cCchHHHH--HHHHHHHHHHhccceecchhhhhhhHHHHh
Confidence 34566666666643 222222234455678888887 66666554 566777777788889999988888887654
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCcc
Q 009515 389 LRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL 468 (533)
Q Consensus 389 ~~~~~~~~w~gdpc~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l 468 (533)
....+..+- ...-.|.- -|+.|-+++|+++ .+|+.++.+..|..||.+.|.+. .+|..+
T Consensus 127 ~ls~NqlS~------------lp~~lC~l-------pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql 185 (722)
T KOG0532|consen 127 DLSSNQLSH------------LPDGLCDL-------PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQL 185 (722)
T ss_pred hhccchhhc------------CChhhhcC-------cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHh
Confidence 332221111 11112321 2888999999998 78999999999999999999999 899999
Q ss_pred CC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 469 GQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 469 ~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+. .+|+.|.+..|++. .+|+++..| .|..||++.|+++ .||-.+.++.. |++|-|.+|+|
T Consensus 186 ~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~-Lq~l~LenNPL 246 (722)
T KOG0532|consen 186 GYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRH-LQVLQLENNPL 246 (722)
T ss_pred hhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhh-heeeeeccCCC
Confidence 99 99999999999999 889988854 6889999999999 99999999775 99999999987
No 18
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.95 E-value=6.3e-10 Score=115.21 Aligned_cols=106 Identities=15% Similarity=0.162 Sum_probs=65.0
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCC-CCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTL-PSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~i-P~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L 502 (533)
.|..|.|+.|+++...+..|.+|+.|+.|+|..|++. .+ --.+.. ++|+.|.|..|+++.--...|-.|.++++|+|
T Consensus 198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred hheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 3555666666666555555666666666666666664 22 112233 66666666666666333334556777778888
Q ss_pred ecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+.|+++..-...++++.+ |+.|+||.|.|
T Consensus 277 ~~N~l~~vn~g~lfgLt~-L~~L~lS~NaI 305 (873)
T KOG4194|consen 277 ETNRLQAVNEGWLFGLTS-LEQLDLSYNAI 305 (873)
T ss_pred ccchhhhhhcccccccch-hhhhccchhhh
Confidence 888877433445677666 88888888865
No 19
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=98.93 E-value=5.6e-09 Score=107.05 Aligned_cols=150 Identities=23% Similarity=0.315 Sum_probs=94.2
Q ss_pred EEEccCCCCC---C-CCCCCceEeeC---CCc--eecCCccc---ccCCCCCCCCcCceeeecCCCC-CCCcceEeecCC
Q 009515 32 YRIDCGSATS---T-TDPFNTTWQAD---DRY--YTSGATSI---VSEPLHFRFPHEKTLRYFPPSS-GKKNCYIIPNLP 98 (533)
Q Consensus 32 ~~IdCG~~~~---~-~d~~~~~w~~D---d~~--~~~g~~~~---~~~~~~~~~~~y~t~R~f~~~~-~~~~cY~l~~~~ 98 (533)
+|++||++.. + .|.-.|.|.+. ..+ +.+..+.. .......|..+|+|||.-.... .-...|.+ +.+
T Consensus 181 ~R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~~ 259 (347)
T PF12819_consen 181 YRLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAVYQTARTPSNSSDPLNLTWSF-VDP 259 (347)
T ss_pred EeecCCCcccccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHHHHhhhcccccccceEEEecc-CCC
Confidence 6899999852 2 55678999962 111 11111110 1113345667899999977532 01235666 666
Q ss_pred CceEEEEEEeecCCCC-CCCCCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEecC-CeEEEEEeecCCC--Ccee
Q 009515 99 PGRYYIRTFTVYDNYD-GKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKD-GELDLCFYSFATD--PPVI 174 (533)
Q Consensus 99 ~~~ylvRl~F~~~nyd-~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~-~~l~v~~~~~~~~--~pfI 174 (533)
+..|+||+||..=... .....++|+|++|+..+.+.++.........+.++++++.+.+ +.+.|+|+++..+ -|+|
T Consensus 260 ~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppiL 339 (347)
T PF12819_consen 260 GFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPIL 339 (347)
T ss_pred CccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcccccCcceEeecceEEEecCCCEEEEEEEeCCCCCcCcee
Confidence 7799999999632111 1122689999999998765444321111223456788877755 5799999998765 4999
Q ss_pred eeEEEEEc
Q 009515 175 ASLEVQQI 182 (533)
Q Consensus 175 s~iEl~~l 182 (533)
||+||..+
T Consensus 340 NalEIy~v 347 (347)
T PF12819_consen 340 NALEIYKV 347 (347)
T ss_pred EeeeeEeC
Confidence 99999864
No 20
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.87 E-value=4e-10 Score=116.44 Aligned_cols=157 Identities=23% Similarity=0.353 Sum_probs=116.7
Q ss_pred EeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcceeecC
Q 009515 338 AKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHP 417 (533)
Q Consensus 338 ~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~c~~ 417 (533)
.+.+..|.+. .+|..+.+ |+++-.++++.|+++.+|..+- .+-||.++.. -+.++|.+
T Consensus 102 ~liLy~n~~r-~ip~~i~~--L~~lt~l~ls~NqlS~lp~~lC-~lpLkvli~s------------------NNkl~~lp 159 (722)
T KOG0532|consen 102 SLILYHNCIR-TIPEAICN--LEALTFLDLSSNQLSHLPDGLC-DLPLKVLIVS------------------NNKLTSLP 159 (722)
T ss_pred HHHHHhccce-ecchhhhh--hhHHHHhhhccchhhcCChhhh-cCcceeEEEe------------------cCccccCC
Confidence 3445566666 67777776 8888888888888888887653 2233332211 12234444
Q ss_pred CCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCC
Q 009515 418 NKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKL 497 (533)
Q Consensus 418 ~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L 497 (533)
..++....|..|+.+.|.+. .+|..+++|++|+.|.+..|++. .+|.++..-.|..||+|.|+++ .||..|.+|+.|
T Consensus 160 ~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi~lDfScNkis-~iPv~fr~m~~L 236 (722)
T KOG0532|consen 160 EEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLIRLDFSCNKIS-YLPVDFRKMRHL 236 (722)
T ss_pred cccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCceeeeecccCcee-ecchhhhhhhhh
Confidence 44455566788888888888 78888899999999999999988 8888887766888999999998 889999999999
Q ss_pred CEEEeecccCcccCchhHHhccc
Q 009515 498 QLVLLNNNLLEGRVPEELYSIGV 520 (533)
Q Consensus 498 ~~L~L~~N~l~g~lP~~l~~l~~ 520 (533)
++|-|.+|.|. .-|..++...+
T Consensus 237 q~l~LenNPLq-SPPAqIC~kGk 258 (722)
T KOG0532|consen 237 QVLQLENNPLQ-SPPAQICEKGK 258 (722)
T ss_pred eeeeeccCCCC-CChHHHHhccc
Confidence 99999999988 77877766443
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.82 E-value=5.2e-09 Score=116.21 Aligned_cols=95 Identities=26% Similarity=0.270 Sum_probs=67.9
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEeecc
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N 505 (533)
|+.|++++|.|+. +|.. +.+|+.|++++|+++ .+|... ++|+.|++++|+|+ .+|... .+|+.|+|++|
T Consensus 364 L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt-~LP~l~--s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~N 432 (788)
T PRK15387 364 LYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT-SLPVLP--SELKELMVSGNRLT-SLPMLP---SGLLSLSVYRN 432 (788)
T ss_pred cceehhhcccccc-Cccc---ccccceEEecCCccc-CCCCcc--cCCCEEEccCCcCC-CCCcch---hhhhhhhhccC
Confidence 4445555555542 3332 246778888888887 455432 57888888888888 577543 46778899999
Q ss_pred cCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 506 LLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 506 ~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
+++ .+|..++.+.. |+.|+|++|+|+
T Consensus 433 qLt-~LP~sl~~L~~-L~~LdLs~N~Ls 458 (788)
T PRK15387 433 QLT-RLPESLIHLSS-ETTVNLEGNPLS 458 (788)
T ss_pred ccc-ccChHHhhccC-CCeEECCCCCCC
Confidence 998 89999888876 899999999875
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=1e-08 Score=93.95 Aligned_cols=102 Identities=29% Similarity=0.444 Sum_probs=37.4
Q ss_pred EEEEEEeCCCCCccccchhhh-ccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccC-CCCcCCCEEE
Q 009515 425 VISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL-TSSSKLQLVL 501 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~-~~l~~L~~L~ 501 (533)
.++.|+|++|.|+. + +.++ .+.+|+.|++++|.++ .++ .+.. ++|+.|++++|+++ .+.+.+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 47788888888873 3 3465 5778888888888888 554 4556 88888888888888 565444 3578888888
Q ss_pred eecccCcccCc--hhHHhcccCCcEEEccCCCCC
Q 009515 502 LNNNLLEGRVP--EELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 502 L~~N~l~g~lP--~~l~~l~~~L~~L~ls~N~l~ 533 (533)
|++|++. .+- ..+..++. |+.|++.+|++|
T Consensus 95 L~~N~I~-~l~~l~~L~~l~~-L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKIS-DLNELEPLSSLPK-LRVLSLEGNPVC 126 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT---EEE-TT-GGG
T ss_pred CcCCcCC-ChHHhHHHHcCCC-cceeeccCCccc
Confidence 8888886 332 33556555 888888888875
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.64 E-value=4.1e-08 Score=109.56 Aligned_cols=101 Identities=25% Similarity=0.401 Sum_probs=81.5
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
..|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|+|++|+|+ .+|..+. ..|+.|+++
T Consensus 325 ~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp-~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs 396 (754)
T PRK15370 325 PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP-PTITTLDVSRNALT-NLPENLP--AALQIMQAS 396 (754)
T ss_pred ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc-CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhc
Confidence 358899999999985 676664 78999999999998 6776543 78999999999999 7887765 368999999
Q ss_pred cccCcccCchhHHhcc---cCCcEEEccCCCCC
Q 009515 504 NNLLEGRVPEELYSIG---VHGGAFEYVKTPNC 533 (533)
Q Consensus 504 ~N~l~g~lP~~l~~l~---~~L~~L~ls~N~l~ 533 (533)
+|+|+ .+|..+..+. ..+..|++.+|+|+
T Consensus 397 ~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 397 RNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 99999 7887665432 23789999999974
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.62 E-value=3.1e-08 Score=110.50 Aligned_cols=95 Identities=25% Similarity=0.417 Sum_probs=55.6
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEeecc
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N 505 (533)
|+.|++++|.++. +|..+ .++|+.|++++|.++ .+|..+. ++|+.|+|++|+++ .+|..+. ++|+.|+|++|
T Consensus 306 L~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~-~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N 377 (754)
T PRK15370 306 ITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASLP-PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRN 377 (754)
T ss_pred HHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCChhhc-CcccEEECCCCCCC-cCChhhc--CCcCEEECCCC
Confidence 4444455555542 33322 245666666666666 3554332 56777777777776 5665543 46777777777
Q ss_pred cCcccCchhHHhcccCCcEEEccCCCC
Q 009515 506 LLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 506 ~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+|+ .+|..+.. .|+.|++++|+|
T Consensus 378 ~Lt-~LP~~l~~---sL~~LdLs~N~L 400 (754)
T PRK15370 378 ALT-NLPENLPA---ALQIMQASRNNL 400 (754)
T ss_pred cCC-CCCHhHHH---HHHHHhhccCCc
Confidence 777 66666543 266677777765
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.52 E-value=1.7e-07 Score=104.34 Aligned_cols=54 Identities=22% Similarity=0.369 Sum_probs=32.9
Q ss_pred EEEECCeecccccccccCCCcceeeeeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChh
Q 009515 309 DILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE 377 (533)
Q Consensus 309 ~I~ing~~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~ 377 (533)
.+++.++.++.++ . ....+..+++++|+|+ .+|+. ...++.+++..|.+..+|.
T Consensus 226 ~L~L~~N~Lt~LP------~---lp~~Lk~LdLs~N~Lt-sLP~l-----p~sL~~L~Ls~N~L~~Lp~ 279 (788)
T PRK15387 226 TLVIPDNNLTSLP------A---LPPELRTLEVSGNQLT-SLPVL-----PPGLLELSIFSNPLTHLPA 279 (788)
T ss_pred EEEccCCcCCCCC------C---CCCCCcEEEecCCccC-cccCc-----ccccceeeccCCchhhhhh
Confidence 4556666555432 1 1235778889999988 56542 2356666677776666654
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.46 E-value=4.6e-08 Score=97.44 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=74.5
Q ss_pred hhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhccc
Q 009515 442 DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGV 520 (533)
Q Consensus 442 ~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~ 520 (533)
..|..|++|+.|+|++|++++.-+.++.. .++++|.|..|++...--..|.++..|+.|+|.+|+++ .+-+..++-..
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~ 346 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLF 346 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccc
Confidence 35889999999999999999666667777 99999999999998544456789999999999999999 55444444444
Q ss_pred CCcEEEccCCCCC
Q 009515 521 HGGAFEYVKTPNC 533 (533)
Q Consensus 521 ~L~~L~ls~N~l~ 533 (533)
.|.+|+|-.|+++
T Consensus 347 ~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 347 SLSTLNLLSNPFN 359 (498)
T ss_pred eeeeeehccCccc
Confidence 4999999999875
No 27
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.43 E-value=1.7e-07 Score=70.55 Aligned_cols=59 Identities=27% Similarity=0.365 Sum_probs=29.4
Q ss_pred CccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515 472 SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 472 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l 532 (533)
+|+.|++++|+++..-+..|.++++|++|++++|+++ .+|+. +..+.+ |+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~-L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPN-LRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTT-ESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCC-CCEEeCcCCcC
Confidence 4555555555555332334555555555555555555 33332 333333 55555555543
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.39 E-value=2.6e-07 Score=69.47 Aligned_cols=58 Identities=38% Similarity=0.570 Sum_probs=39.2
Q ss_pred CCCEEEccCCCCCCCCCC-ccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccC
Q 009515 449 NLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLL 507 (533)
Q Consensus 449 ~L~~L~Ls~N~l~g~iP~-~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l 507 (533)
+|+.|++++|+++ .+|+ .+.. ++|++|++++|+++...|..|.++++|+.|++++|++
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5667777777776 4444 3444 7777777777777755556677777777777777764
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.33 E-value=1.4e-06 Score=103.20 Aligned_cols=101 Identities=22% Similarity=0.199 Sum_probs=64.6
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
+.|+.|+|++|...+.+|.++++|++|+.|++++|..-+.+|..+.-++|+.|+|++|.....+|.. ..+|+.|+|+
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 4688889999888888999999999999999998765557776652155666666655433344432 1345555555
Q ss_pred cccCcccCchhHHhcccCCcEEEccC
Q 009515 504 NNLLEGRVPEELYSIGVHGGAFEYVK 529 (533)
Q Consensus 504 ~N~l~g~lP~~l~~l~~~L~~L~ls~ 529 (533)
+|.++ .+|..+..+.. |+.|++++
T Consensus 855 ~n~i~-~iP~si~~l~~-L~~L~L~~ 878 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSN-LSFLDMNG 878 (1153)
T ss_pred CCCCc-cChHHHhcCCC-CCEEECCC
Confidence 55555 45555554443 55555544
No 30
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.27 E-value=1.5e-06 Score=103.02 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=17.0
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCC
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTN 458 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N 458 (533)
.|+.|+|++|.....+|..++++++|+.|++++|
T Consensus 658 ~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 658 NLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred cccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 4555555554444445555555555555555544
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.26 E-value=5.1e-07 Score=94.64 Aligned_cols=170 Identities=23% Similarity=0.346 Sum_probs=99.9
Q ss_pred eeEeecCCceEEEEecccchhhhhh-ccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 009515 336 YVAKNLSSTELTVKLVPVVGAALIS-GLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (533)
Q Consensus 336 l~~l~l~~n~L~~~l~~~~~~~iLn-~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~ 414 (533)
+..+.+.++.++ .+++..+. +. .++.+++..+.+.++|.++..+..++......+ .+..+.
T Consensus 118 l~~L~l~~n~i~-~i~~~~~~--~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N---------------~l~~l~ 179 (394)
T COG4886 118 LTSLDLDNNNIT-DIPPLIGL--LKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN---------------DLSDLP 179 (394)
T ss_pred eeEEecCCcccc-cCcccccc--chhhcccccccccchhhhhhhhhccccccccccCCc---------------hhhhhh
Confidence 455556666665 55555443 42 667777777777777655566666554322111 111110
Q ss_pred ecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCC
Q 009515 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (533)
Q Consensus 415 c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~ 493 (533)
- ....+..|+.|++++|++. .+|..+..+..|+.|.+++|++. .++..+.. .++..+.+.+|++. .+|..++.
T Consensus 180 ~---~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~ 253 (394)
T COG4886 180 K---LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN 253 (394)
T ss_pred h---hhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcc
Confidence 0 0002234666777777776 56666666666777777777544 45555666 66667777777766 44666677
Q ss_pred CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
++.|+.|++++|+++ .++. ++.+.. |+.|++++|.+
T Consensus 254 l~~l~~L~~s~n~i~-~i~~-~~~~~~-l~~L~~s~n~~ 289 (394)
T COG4886 254 LSNLETLDLSNNQIS-SISS-LGSLTN-LRELDLSGNSL 289 (394)
T ss_pred ccccceecccccccc-cccc-ccccCc-cCEEeccCccc
Confidence 777777777777777 5655 555444 77777777654
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.25 E-value=1.4e-07 Score=90.92 Aligned_cols=117 Identities=17% Similarity=0.168 Sum_probs=77.0
Q ss_pred CcceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCC
Q 009515 410 WEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488 (533)
Q Consensus 410 w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP 488 (533)
.+.+.|......-++.++.|++++|++. .+ ..+..|.+|+.||||+|.++ .+-.+-.+ .+++.|.|++|.+. .+
T Consensus 293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~L- 367 (490)
T KOG1259|consen 293 GNLITQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TL- 367 (490)
T ss_pred ccchhhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hh-
Confidence 3445554444444566777888888876 22 23777778888888888877 44433333 67777778877776 22
Q ss_pred ccCCCCcCCCEEEeecccCcccCc--hhHHhcccCCcEEEccCCCCC
Q 009515 489 DSLTSSSKLQLVLLNNNLLEGRVP--EELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 489 ~~~~~l~~L~~L~L~~N~l~g~lP--~~l~~l~~~L~~L~ls~N~l~ 533 (533)
+.+++|-+|..||+.+|++. ++- ..+++++. |++|.|.+|+++
T Consensus 368 SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPC-LE~l~L~~NPl~ 412 (490)
T KOG1259|consen 368 SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPC-LETLRLTGNPLA 412 (490)
T ss_pred hhhHhhhhheeccccccchh-hHHHhcccccccH-HHHHhhcCCCcc
Confidence 24566777888888888876 332 34677777 788888888764
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.24 E-value=2.3e-07 Score=89.44 Aligned_cols=101 Identities=21% Similarity=0.248 Sum_probs=86.3
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
.|+.+||++|.++ .+.++..-++.++.|++|.|.+. .+-. +.. .+|+.||||+|.|+ .+-.+-.+|-+.+.|.|+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence 4889999999998 78888999999999999999997 5443 777 99999999999999 666666678889999999
Q ss_pred cccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 504 NNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+|.++ .+ ..++++-+ |..||+++|++
T Consensus 361 ~N~iE-~L-SGL~KLYS-LvnLDl~~N~I 386 (490)
T KOG1259|consen 361 QNKIE-TL-SGLRKLYS-LVNLDLSSNQI 386 (490)
T ss_pred hhhHh-hh-hhhHhhhh-heeccccccch
Confidence 99987 43 35777766 99999999986
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.18 E-value=1.7e-06 Score=87.61 Aligned_cols=108 Identities=20% Similarity=0.218 Sum_probs=77.4
Q ss_pred EEEEEEeCCCCCcc----ccchhhhccCCCCEEEccCCCCCCCC----CCccCC-CCccEEEccCCccccCCCccCC---
Q 009515 425 VISQIDLGSQGLKG----YISDKISLLSNLVNLNLSTNSLGGTL----PSGLGQ-QSLVRLDLSDNQFTGSIPDSLT--- 492 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~i----P~~l~~-~~L~~L~Ls~N~l~g~iP~~~~--- 492 (533)
.|+.|++++|.+++ .++..+..+++|+.|++++|.+++.- ...+.. ++|+.|++++|++++.....+.
T Consensus 166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~ 245 (319)
T cd00116 166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL 245 (319)
T ss_pred CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH
Confidence 48889999999884 24445666679999999999887442 333445 7899999999998853222222
Q ss_pred --CCcCCCEEEeecccCc----ccCchhHHhcccCCcEEEccCCCCC
Q 009515 493 --SSSKLQLVLLNNNLLE----GRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 493 --~l~~L~~L~L~~N~l~----g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
..+.|+.|++++|.++ +.+...+..+.. |+.|++++|.+.
T Consensus 246 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~-L~~l~l~~N~l~ 291 (319)
T cd00116 246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKES-LLELDLRGNKFG 291 (319)
T ss_pred hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCC-ccEEECCCCCCc
Confidence 2478999999999986 334455555544 899999999863
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.14 E-value=2.3e-06 Score=78.53 Aligned_cols=83 Identities=28% Similarity=0.329 Sum_probs=29.0
Q ss_pred hhccCCCCEEEccCCCCCCCCCCccC-C-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHH-hccc
Q 009515 444 ISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELY-SIGV 520 (533)
Q Consensus 444 l~~L~~L~~L~Ls~N~l~g~iP~~l~-~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~-~l~~ 520 (533)
+.+...++.|+|.+|.++ .| +.++ . .+|+.|+|++|+++ .++ .+..|+.|+.|++++|+++ .+...+. .++.
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCc
Confidence 456668899999999998 55 3566 3 89999999999999 665 5888999999999999999 7876664 4555
Q ss_pred CCcEEEccCCCC
Q 009515 521 HGGAFEYVKTPN 532 (533)
Q Consensus 521 ~L~~L~ls~N~l 532 (533)
|+.|++++|++
T Consensus 90 -L~~L~L~~N~I 100 (175)
T PF14580_consen 90 -LQELYLSNNKI 100 (175)
T ss_dssp ---EEE-TTS--
T ss_pred -CCEEECcCCcC
Confidence 99999999986
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=2.5e-07 Score=79.46 Aligned_cols=85 Identities=22% Similarity=0.380 Sum_probs=41.8
Q ss_pred EEEEEeCCCCCccccchhhh-ccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 426 ISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
|+.++|++|.+. .+|+.|. ..+.++.|+|++|.+. .+|.++.. +.|+.|+++.|.+. ..|.-+..|.+|..|+..
T Consensus 55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 444555555555 2333333 2234555555555554 55555444 55555555555555 444444445555555555
Q ss_pred cccCcccCchh
Q 009515 504 NNLLEGRVPEE 514 (533)
Q Consensus 504 ~N~l~g~lP~~ 514 (533)
+|... +||-.
T Consensus 132 ~na~~-eid~d 141 (177)
T KOG4579|consen 132 ENARA-EIDVD 141 (177)
T ss_pred CCccc-cCcHH
Confidence 55554 44444
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.07 E-value=1.5e-06 Score=88.01 Aligned_cols=108 Identities=23% Similarity=0.316 Sum_probs=81.2
Q ss_pred eEEEEEEeCCCCCcc----ccchhhhcc-CCCCEEEccCCCCCCCCCC----ccCC-CCccEEEccCCccccC----CCc
Q 009515 424 VVISQIDLGSQGLKG----YISDKISLL-SNLVNLNLSTNSLGGTLPS----GLGQ-QSLVRLDLSDNQFTGS----IPD 489 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g----~~p~~l~~L-~~L~~L~Ls~N~l~g~iP~----~l~~-~~L~~L~Ls~N~l~g~----iP~ 489 (533)
+.|+.|++++|.+.+ .+...+..+ ++|+.|++++|.+++.... .+.. .+|+.|++++|.+++. ++.
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 349999999999883 444566777 8999999999999854333 3334 6899999999999853 344
Q ss_pred cCCCCcCCCEEEeecccCcccC----chhHHhcccCCcEEEccCCCC
Q 009515 490 SLTSSSKLQLVLLNNNLLEGRV----PEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 490 ~~~~l~~L~~L~L~~N~l~g~l----P~~l~~l~~~L~~L~ls~N~l 532 (533)
.+..+++|+.|+|++|.+++.- +..+..+.. |+.|++++|++
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~-L~~L~ls~n~l 233 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKS-LEVLNLGDNNL 233 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC-CCEEecCCCcC
Confidence 5566779999999999987433 333444544 99999999986
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.02 E-value=9.6e-07 Score=88.21 Aligned_cols=118 Identities=20% Similarity=0.274 Sum_probs=88.7
Q ss_pred cceeecCCCCC-----ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEE-ccCCcc
Q 009515 411 EGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLD-LSDNQF 483 (533)
Q Consensus 411 ~gv~c~~~~~~-----~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~-Ls~N~l 483 (533)
.-|.|...... -+...+.|+|..|+|+...+..|+.+++|+.||||+|+++-.-|+.+.. ++|..|- +++|++
T Consensus 49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI 128 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI 128 (498)
T ss_pred ceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence 44777655432 2345789999999999888889999999999999999999777777777 6665554 555999
Q ss_pred ccCCCc-cCCCCcCCCEEEeecccCcccCchh-HHhcccCCcEEEccCCC
Q 009515 484 TGSIPD-SLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTP 531 (533)
Q Consensus 484 ~g~iP~-~~~~l~~L~~L~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~ 531 (533)
+ .+|. .|++|.+|+-|.+.-|++. .+++. +..+.. |..|.+-+|.
T Consensus 129 ~-~l~k~~F~gL~slqrLllNan~i~-Cir~~al~dL~~-l~lLslyDn~ 175 (498)
T KOG4237|consen 129 T-DLPKGAFGGLSSLQRLLLNANHIN-CIRQDALRDLPS-LSLLSLYDNK 175 (498)
T ss_pred h-hhhhhHhhhHHHHHHHhcChhhhc-chhHHHHHHhhh-cchhcccchh
Confidence 9 6664 6888888888888888888 55554 444443 7677776664
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.01 E-value=1.8e-07 Score=99.57 Aligned_cols=106 Identities=24% Similarity=0.276 Sum_probs=85.3
Q ss_pred ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEE
Q 009515 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (533)
Q Consensus 422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L 500 (533)
-++.++.|+|++|++... ..+..|+.|++|||+.|.|+ .+|..-.. -+|+.|.|.+|.++ .+ ..+.+|++|+.|
T Consensus 185 ll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrnN~l~-tL-~gie~LksL~~L 259 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRNNALT-TL-RGIENLKSLYGL 259 (1096)
T ss_pred HHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeecccHHH-hh-hhHHhhhhhhcc
Confidence 345689999999999843 37889999999999999998 77754333 66999999999998 43 357899999999
Q ss_pred EeecccCcccCchh-HHhcccCCcEEEccCCCCC
Q 009515 501 LLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 501 ~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l~ 533 (533)
||+.|-+++.-.-. ++.+.. |+.|.|.+|++|
T Consensus 260 DlsyNll~~hseL~pLwsLs~-L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSS-LIVLWLEGNPLC 292 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHH-HHHHhhcCCccc
Confidence 99999988543322 455665 899999999987
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.95 E-value=2.7e-06 Score=89.17 Aligned_cols=151 Identities=26% Similarity=0.373 Sum_probs=116.5
Q ss_pred hccccccccCCCCCCChhHHHHHH-HHHHhcCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCcc
Q 009515 360 SGLENYALVPNDLSTVPEQVIAMR-ALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG 438 (533)
Q Consensus 360 n~lEi~~l~~~~~~~~p~~~~~l~-~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g 438 (533)
..++.+.+..+.+..+++....+. .++......+.. .-+ +.....++.|+.|+++.|++.
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i---------------~~l---~~~~~~l~~L~~L~l~~N~l~- 176 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI---------------ESL---PSPLRNLPNLKNLDLSFNDLS- 176 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccch---------------hhh---hhhhhccccccccccCCchhh-
Confidence 456777888888888888777664 676543221100 000 012234567999999999999
Q ss_pred ccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHh
Q 009515 439 YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYS 517 (533)
Q Consensus 439 ~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~ 517 (533)
.+|...+.++.|+.|++++|+++ .+|..+.. ..|+.|.+++|++. .++..+..+.++..|.+.+|++. .+|..+..
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~ 253 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhcc
Confidence 67777778999999999999999 89988767 77999999999766 67778899999999999999998 66788888
Q ss_pred cccCCcEEEccCCCCC
Q 009515 518 IGVHGGAFEYVKTPNC 533 (533)
Q Consensus 518 l~~~L~~L~ls~N~l~ 533 (533)
+.. |+.|++++|+++
T Consensus 254 l~~-l~~L~~s~n~i~ 268 (394)
T COG4886 254 LSN-LETLDLSNNQIS 268 (394)
T ss_pred ccc-cceecccccccc
Confidence 776 999999999874
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=1.4e-06 Score=75.04 Aligned_cols=102 Identities=23% Similarity=0.343 Sum_probs=82.4
Q ss_pred EEEEEeCCCCCccccchh---hhccCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCCccccCCCccCCCCcCCCEE
Q 009515 426 ISQIDLGSQGLKGYISDK---ISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~---l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L 500 (533)
+..++|+++.+. .+++. +.....|..++|++|.+. ..|+.+.. +.++.|+|++|+++ .+|+++..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 455778887775 45554 444456677799999998 78888776 68999999999999 899999999999999
Q ss_pred EeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 501 LLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 501 ~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+++.|.|. ..|.-+..+.+ |..|+..+|.+
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~-l~~Lds~~na~ 135 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIK-LDMLDSPENAR 135 (177)
T ss_pred ccccCccc-cchHHHHHHHh-HHHhcCCCCcc
Confidence 99999999 78888888766 88888888864
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.4e-05 Score=55.61 Aligned_cols=40 Identities=35% Similarity=0.563 Sum_probs=28.5
Q ss_pred CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCc
Q 009515 471 QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVP 512 (533)
Q Consensus 471 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP 512 (533)
++|++|++++|+++ .+|..+++|++|+.|++++|+++ .+|
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 35777777777777 67777788888888888888877 544
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.49 E-value=9.8e-05 Score=51.36 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=32.0
Q ss_pred cCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 495 SKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 495 ~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
++|++|++++|+++ .+|+.++++.+ |+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~-L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPN-LETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTT-SSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCC-CCEEEecCCCCC
Confidence 47999999999999 89998999887 999999999974
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=9.6e-06 Score=86.78 Aligned_cols=100 Identities=25% Similarity=0.314 Sum_probs=78.5
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~ 504 (533)
|...+.+.|.|. .+-.++.-++.|+.|+|++|+++ .+. .+.. ++|+.|||++|.|. .+|..-..-.+|+.|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence 445566677776 56778889999999999999998 443 6666 99999999999999 7776432223499999999
Q ss_pred ccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 505 NLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 505 N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
|.++ ++ ..+-++.. |..||++.|-|
T Consensus 242 N~l~-tL-~gie~Lks-L~~LDlsyNll 266 (1096)
T KOG1859|consen 242 NALT-TL-RGIENLKS-LYGLDLSYNLL 266 (1096)
T ss_pred cHHH-hh-hhHHhhhh-hhccchhHhhh
Confidence 9998 44 34667665 99999999965
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.26 E-value=0.00014 Score=82.84 Aligned_cols=103 Identities=25% Similarity=0.256 Sum_probs=77.9
Q ss_pred EEEEEEeCCCC--CccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 425 VISQIDLGSQG--LKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 425 ~L~~L~Ls~n~--l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
.|+.|-+..|. +.-.....|..++.|+.||||+|.=-+.+|..++. -+|++|+|++..++ .+|..+++|++|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 46777777775 44333444677888888888888777788888888 88888888888888 8888888888888888
Q ss_pred eecccCcccCchhHHhcccCCcEEEccC
Q 009515 502 LNNNLLEGRVPEELYSIGVHGGAFEYVK 529 (533)
Q Consensus 502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~ 529 (533)
+..+.....+|..+..+.+ |++|.+-.
T Consensus 625 l~~~~~l~~~~~i~~~L~~-Lr~L~l~~ 651 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQS-LRVLRLPR 651 (889)
T ss_pred cccccccccccchhhhccc-ccEEEeec
Confidence 8887765456655555665 88887653
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=6.5e-05 Score=76.32 Aligned_cols=108 Identities=18% Similarity=0.191 Sum_probs=63.9
Q ss_pred ceeEEEEEEeCCCCCccc--cchhhhccCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCCccccC-CCccCCCCcC
Q 009515 422 TAVVISQIDLGSQGLKGY--ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGS-IPDSLTSSSK 496 (533)
Q Consensus 422 ~~~~L~~L~Ls~n~l~g~--~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N~l~g~-iP~~~~~l~~ 496 (533)
.++.++.|||+.|-+... +-.-...|++|+.|+|+.|++.-.+...... ++|+.|.|+++.|+-. +-.....+++
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 345677888888877643 2344567788888888888886444444433 7777777777777632 1112334566
Q ss_pred CCEEEeecccC--cccCchhHHhcccCCcEEEccCCCC
Q 009515 497 LQLVLLNNNLL--EGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 497 L~~L~L~~N~l--~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
|+.|+|..|.. ....+..+. +.|+.|||++|++
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~---~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKIL---QTLQELDLSNNNL 258 (505)
T ss_pred HHHhhhhcccccceecchhhhh---hHHhhccccCCcc
Confidence 77777776631 112222221 2266677777664
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.06 E-value=0.00023 Score=75.13 Aligned_cols=103 Identities=26% Similarity=0.304 Sum_probs=79.3
Q ss_pred eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
+..+..|++..|+|.. +...+..+.+|++|++++|.++ .+. .+.. ..|+.|++++|.++ .+. .+..+..|+.++
T Consensus 94 ~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLD 168 (414)
T ss_pred ccceeeeeccccchhh-cccchhhhhcchheeccccccc-ccc-chhhccchhhheeccCcch-hcc-CCccchhhhccc
Confidence 4568899999999984 4444788999999999999998 433 2344 77999999999999 554 456688999999
Q ss_pred eecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515 502 LNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 502 L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l 532 (533)
+++|++. .++.. +..+.. |+.+.+++|.+
T Consensus 169 l~~n~i~-~ie~~~~~~~~~-l~~l~l~~n~i 198 (414)
T KOG0531|consen 169 LSYNRIV-DIENDELSELIS-LEELDLGGNSI 198 (414)
T ss_pred CCcchhh-hhhhhhhhhccc-hHHHhccCCch
Confidence 9999998 55553 345555 78888888865
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.81 E-value=0.00087 Score=76.60 Aligned_cols=83 Identities=28% Similarity=0.392 Sum_probs=74.9
Q ss_pred eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
++.|+.|||++|.--+.+|.+++.|-+|++|+++...+. .+|..+.. +.|.+|++..+.-...+|.-+..|++|++|.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 456999999998877899999999999999999999999 99999999 9999999999887667777777899999999
Q ss_pred eeccc
Q 009515 502 LNNNL 506 (533)
Q Consensus 502 L~~N~ 506 (533)
+..-.
T Consensus 649 l~~s~ 653 (889)
T KOG4658|consen 649 LPRSA 653 (889)
T ss_pred eeccc
Confidence 88665
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.79 E-value=0.00028 Score=74.54 Aligned_cols=100 Identities=23% Similarity=0.284 Sum_probs=78.4
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~ 504 (533)
+..+.++.|.+.. +-..+..+++|+.|++..|++. .+...+.. .+|++|+|++|+++ .+. .+..+..|+.|++.+
T Consensus 74 l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-ccc-chhhccchhhheecc
Confidence 5556677777763 4455888999999999999998 55554666 99999999999999 443 467788899999999
Q ss_pred ccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 505 NLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 505 N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
|.++ .++. +..+.. |+.+++++|.+
T Consensus 150 N~i~-~~~~-~~~l~~-L~~l~l~~n~i 174 (414)
T KOG0531|consen 150 NLIS-DISG-LESLKS-LKLLDLSYNRI 174 (414)
T ss_pred Ccch-hccC-Cccchh-hhcccCCcchh
Confidence 9998 5543 333444 89999999976
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.53 E-value=0.0026 Score=58.77 Aligned_cols=99 Identities=26% Similarity=0.365 Sum_probs=74.1
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCCccccCCCc--cCCCCcCCCEE
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPD--SLTSSSKLQLV 500 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N~l~g~iP~--~~~~l~~L~~L 500 (533)
....+||+.|.+.. -+.|..+..|..|.|.+|.++ .|-+.+.. ++|..|.|.+|.+. .+-+ -+..|++|+.|
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 35678999998863 244677889999999999999 77777777 88999999999887 3322 35678899999
Q ss_pred EeecccCcccCc----hhHHhcccCCcEEEccC
Q 009515 501 LLNNNLLEGRVP----EELYSIGVHGGAFEYVK 529 (533)
Q Consensus 501 ~L~~N~l~g~lP----~~l~~l~~~L~~L~ls~ 529 (533)
.+-+|..+ ..+ -.+..++. |+.||+++
T Consensus 119 tll~Npv~-~k~~YR~yvl~klp~-l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVE-HKKNYRLYVLYKLPS-LRTLDFQK 149 (233)
T ss_pred eecCCchh-cccCceeEEEEecCc-ceEeehhh
Confidence 99999886 332 12455555 88888764
No 51
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0004 Score=70.80 Aligned_cols=106 Identities=19% Similarity=0.161 Sum_probs=78.6
Q ss_pred ceeEEEEEEeCCCCCcc-ccchhhhccCCCCEEEccCCCCCCCCCCccCC---CCccEEEccCCccccCCC--ccCCCCc
Q 009515 422 TAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ---QSLVRLDLSDNQFTGSIP--DSLTSSS 495 (533)
Q Consensus 422 ~~~~L~~L~Ls~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~---~~L~~L~Ls~N~l~g~iP--~~~~~l~ 495 (533)
.++.++.|.|++++|+- .+-.-+..+++|+.|+|..|... .-..... ..|+.|||++|++. ..+ ...+.++
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~--~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEII--LIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLP 271 (505)
T ss_pred hhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccccc--ceecchhhhhhHHhhccccCCccc-cccccccccccc
Confidence 34578999999999982 23344567899999999999632 2222222 78999999999998 666 3578899
Q ss_pred CCCEEEeecccCcccC--chh-----HHhcccCCcEEEccCCCC
Q 009515 496 KLQLVLLNNNLLEGRV--PEE-----LYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 496 ~L~~L~L~~N~l~g~l--P~~-----l~~l~~~L~~L~ls~N~l 532 (533)
.|..|+++.+.+. .+ |+. .....+ |+.|+++.|++
T Consensus 272 ~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~k-L~~L~i~~N~I 313 (505)
T KOG3207|consen 272 GLNQLNLSSTGIA-SIAEPDVESLDKTHTFPK-LEYLNISENNI 313 (505)
T ss_pred chhhhhccccCcc-hhcCCCccchhhhccccc-ceeeecccCcc
Confidence 9999999999886 33 333 233344 99999999987
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.89 E-value=0.012 Score=54.36 Aligned_cols=82 Identities=24% Similarity=0.265 Sum_probs=62.6
Q ss_pred CCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCc--hhHHhcccCCcE
Q 009515 448 SNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVP--EELYSIGVHGGA 524 (533)
Q Consensus 448 ~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP--~~l~~l~~~L~~ 524 (533)
.+...+||++|.+. .++ .+.. +.|.+|.|++|+++..-|.--.-+++|+.|.|.+|.+. ++- ..+..+++ |+.
T Consensus 42 d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~-L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPK-LEY 117 (233)
T ss_pred cccceecccccchh-hcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCc-cce
Confidence 46788999999996 444 4555 99999999999999444443334678999999999987 332 22566776 999
Q ss_pred EEccCCCCC
Q 009515 525 FEYVKTPNC 533 (533)
Q Consensus 525 L~ls~N~l~ 533 (533)
|.+-+|+.|
T Consensus 118 Ltll~Npv~ 126 (233)
T KOG1644|consen 118 LTLLGNPVE 126 (233)
T ss_pred eeecCCchh
Confidence 999999864
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.81 E-value=0.0047 Score=61.51 Aligned_cols=184 Identities=15% Similarity=0.144 Sum_probs=100.3
Q ss_pred eeeEeecCCceEEEEecccchh--hhhhccccccccCCCCCCChhHH--HHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 009515 335 HYVAKNLSSTELTVKLVPVVGA--ALISGLENYALVPNDLSTVPEQV--IAMRALKESLRVPDRMGWNGDPCAPTNWDAW 410 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~--~iLn~lEi~~l~~~~~~~~p~~~--~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w 410 (533)
+++.++|++|.+--..++.... .-...+|-+.+.++.++-.-... .||..+...-..+. + ...
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~-------~------~~L 159 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAAS-------K------PKL 159 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCC-------C------cce
Confidence 6888899998665333333321 11445566666666554222111 23333321111111 0 133
Q ss_pred cceeecCCCCC------------ceeEEEEEEeCCCCCcc----ccchhhhccCCCCEEEccCCCCCCCC----CCccCC
Q 009515 411 EGITCHPNKDE------------TAVVISQIDLGSQGLKG----YISDKISLLSNLVNLNLSTNSLGGTL----PSGLGQ 470 (533)
Q Consensus 411 ~gv~c~~~~~~------------~~~~L~~L~Ls~n~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~i----P~~l~~ 470 (533)
.-+.|..+... ..+.|..+.+..|.+.- .+...+..+++|+.|||..|-++..- -..+..
T Consensus 160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s 239 (382)
T KOG1909|consen 160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS 239 (382)
T ss_pred EEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc
Confidence 44445433211 12357777777777652 23445677888888888888887332 223334
Q ss_pred -CCccEEEccCCccccCCCccC-----CCCcCCCEEEeecccCccc----CchhHHhcccCCcEEEccCCCC
Q 009515 471 -QSLVRLDLSDNQFTGSIPDSL-----TSSSKLQLVLLNNNLLEGR----VPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 471 -~~L~~L~Ls~N~l~g~iP~~~-----~~l~~L~~L~L~~N~l~g~----lP~~l~~l~~~L~~L~ls~N~l 532 (533)
++|+.|+++++.++-.--..+ ...++|+.|.|.+|.++.. +-..+.. .+.|..|+|++|.+
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~l 310 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNRL 310 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcccc
Confidence 678888888887764322111 2356788888888877621 1222333 33478888888876
No 54
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=95.47 E-value=0.021 Score=39.30 Aligned_cols=36 Identities=33% Similarity=0.633 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHhcCC-CC--CCCCCCC---CCCCCCCCCCcceeec
Q 009515 376 PEQVIAMRALKESLRV-PD--RMGWNGD---PCAPTNWDAWEGITCH 416 (533)
Q Consensus 376 p~~~~~l~~lk~~~~~-~~--~~~w~gd---pc~~~~~~~w~gv~c~ 416 (533)
++|..+|+++|+.+.. +. ..+|+.. .| |.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~-----C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDP-----CSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-C-----CCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCC-----eeeccEEeC
Confidence 5789999999999874 31 3589753 22 689999995
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.41 E-value=0.036 Score=57.53 Aligned_cols=50 Identities=16% Similarity=0.269 Sum_probs=27.1
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCC-CCCCCCCCccCCCCccEEEccCCc
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTN-SLGGTLPSGLGQQSLVRLDLSDNQ 482 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N-~l~g~iP~~l~~~~L~~L~Ls~N~ 482 (533)
.|+.|.++++.--..+|..+ ..+|+.|++++| .+. .+|. +|+.|+++.|.
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-----sLe~L~L~~n~ 123 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-----SVRSLEIKGSA 123 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-----ccceEEeCCCC
Confidence 46677776633223455444 246777777776 443 4443 35555555544
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.25 E-value=0.031 Score=58.02 Aligned_cols=30 Identities=3% Similarity=0.139 Sum_probs=20.0
Q ss_pred eEEEEEEeCCC-CCccccchhhhccCCCCEEEccCCCC
Q 009515 424 VVISQIDLGSQ-GLKGYISDKISLLSNLVNLNLSTNSL 460 (533)
Q Consensus 424 ~~L~~L~Ls~n-~l~g~~p~~l~~L~~L~~L~Ls~N~l 460 (533)
..|+.|.+++| .+. .+|+ +|+.|+++.+.+
T Consensus 94 ~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L~~n~~ 124 (426)
T PRK15386 94 EGLEKLTVCHCPEIS-GLPE------SVRSLEIKGSAT 124 (426)
T ss_pred hhhhheEccCccccc-cccc------ccceEEeCCCCC
Confidence 46889999988 554 4554 466666766554
No 57
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.98 E-value=0.011 Score=34.32 Aligned_cols=19 Identities=58% Similarity=0.777 Sum_probs=8.9
Q ss_pred ccEEEccCCccccCCCccCC
Q 009515 473 LVRLDLSDNQFTGSIPDSLT 492 (533)
Q Consensus 473 L~~L~Ls~N~l~g~iP~~~~ 492 (533)
|++|||++|+++ .+|++|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 444455555444 4444433
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.88 E-value=0.0082 Score=58.62 Aligned_cols=72 Identities=22% Similarity=0.264 Sum_probs=45.2
Q ss_pred CCcceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCCcc
Q 009515 409 AWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQF 483 (533)
Q Consensus 409 ~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N~l 483 (533)
.|+.+.|.-. .+++|+.|+|+.|++...|...-..+.+|+.|-|.+..|...--.++-. +.++.|++|.|.+
T Consensus 85 dWseI~~ile---~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 85 DWSEIGAILE---QLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred cHHHHHHHHh---cCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 5777777543 3566778888888877444322245667777777777776554444333 6677777777743
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.37 E-value=0.018 Score=55.27 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=63.7
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCC--CCCCCCCCccCC-CCccEEEccCCccccCCCccC---CCCcCCCE
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTN--SLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL---TSSSKLQL 499 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N--~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~---~~l~~L~~ 499 (533)
++.|.+.+.+++. -..+-.|++|+.|.+|.| +..+.++.-... ++|++|+|++|++. . ++++ ..+.+|..
T Consensus 45 le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~-~-lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 45 LELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK-D-LSTLRPLKELENLKS 120 (260)
T ss_pred hhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc-c-ccccchhhhhcchhh
Confidence 4455555555542 123556788999999999 666666655555 99999999999987 2 4443 45667888
Q ss_pred EEeecccCcccC---chhHHhcccCCcEEE
Q 009515 500 VLLNNNLLEGRV---PEELYSIGVHGGAFE 526 (533)
Q Consensus 500 L~L~~N~l~g~l---P~~l~~l~~~L~~L~ 526 (533)
|++.+|.-++ + -..++.+..+|++||
T Consensus 121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 121 LDLFNCSVTN-LDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhcccCCccc-cccHHHHHHHHhhhhcccc
Confidence 8998887663 3 123455554566665
No 60
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.29 E-value=0.031 Score=55.87 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEEeCCCCCccccchh----hhccCCCCEEEccCCCCC
Q 009515 426 ISQIDLGSQGLKGYISDK----ISLLSNLVNLNLSTNSLG 461 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~----l~~L~~L~~L~Ls~N~l~ 461 (533)
|+.|+||.|.+.-.-++. +..++.|++|.|.+|.+.
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 566666666665332222 334455666666666553
No 61
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=94.13 E-value=0.059 Score=52.08 Aligned_cols=65 Identities=31% Similarity=0.566 Sum_probs=51.1
Q ss_pred hHHHHHHhhccCcceEEEEecCCCCcEEEEEEeeccccCcCCCceeEEEEEEC-Ce-ecccccccccCC
Q 009515 261 PMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVN-DK-NVTRVDIFNSVG 327 (533)
Q Consensus 261 P~~V~~TA~~~~~~l~~~~~~~~~~~y~v~lhF~ei~~~~~~~~~R~F~I~in-g~-~l~~~di~~~~~ 327 (533)
-...|||+|.-...+.|..+.+..++|-+.|-|||.. ....+..+|++.+| +. .+..+||+...|
T Consensus 107 d~ily~ter~neetFgyd~pik~dgdyalvlkfaevy--F~~~q~kvfdvrln~sh~vVk~ldi~~~vg 173 (355)
T KOG3593|consen 107 DIILYQTERYNEETFGYDVPIKEDGDYALVLKFAEVY--FKTCQHKVFDVRLNCSHCVVKALDIFDQVG 173 (355)
T ss_pred hhhhhhhcccchhhhcccccccCCCceehhhhHHHHH--HHhhhhhheeeeeccceeEEeccchhhhcC
Confidence 3468999996534466777777789999999999976 34567899999999 65 678888887665
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.86 E-value=0.041 Score=52.95 Aligned_cols=83 Identities=19% Similarity=0.256 Sum_probs=58.8
Q ss_pred hhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCC--ccccCCCccCCCCcCCCEEEeecccCcccCchh---HHh
Q 009515 444 ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN--QFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE---LYS 517 (533)
Q Consensus 444 l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N--~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~---l~~ 517 (533)
.-.+..|+.|.+.+..++ ++- .+.. ++|+.|.+|.| +.++.++.....+++|++|+|++|++. ++.. +..
T Consensus 39 ~d~~~~le~ls~~n~glt-t~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~ 114 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLT-TLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKE 114 (260)
T ss_pred cccccchhhhhhhcccee-ecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhh
Confidence 344556667777777776 322 2334 89999999999 777777776777899999999999986 2333 344
Q ss_pred cccCCcEEEccCCC
Q 009515 518 IGVHGGAFEYVKTP 531 (533)
Q Consensus 518 l~~~L~~L~ls~N~ 531 (533)
+.. |..||+.+|.
T Consensus 115 l~n-L~~Ldl~n~~ 127 (260)
T KOG2739|consen 115 LEN-LKSLDLFNCS 127 (260)
T ss_pred hcc-hhhhhcccCC
Confidence 443 7788888774
No 63
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.80 E-value=0.0013 Score=61.80 Aligned_cols=84 Identities=23% Similarity=0.264 Sum_probs=69.5
Q ss_pred eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
..+.+.||++.|++- .+...+..++.|..|+++.|.+. .+|..+.+ ..+..+++..|.++ ..|.++++++.++.++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 346888999998876 45667788888899999999887 78888888 88888888888888 7888899999999998
Q ss_pred eecccCcc
Q 009515 502 LNNNLLEG 509 (533)
Q Consensus 502 L~~N~l~g 509 (533)
+-.|.|..
T Consensus 118 ~k~~~~~~ 125 (326)
T KOG0473|consen 118 QKKTEFFR 125 (326)
T ss_pred hccCcchH
Confidence 88888763
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.75 E-value=0.11 Score=50.41 Aligned_cols=37 Identities=24% Similarity=0.511 Sum_probs=22.3
Q ss_pred EEEEEEeCCCCCccccchhhh----ccCCCCEEEccCCCCC
Q 009515 425 VISQIDLGSQGLKGYISDKIS----LLSNLVNLNLSTNSLG 461 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~----~L~~L~~L~Ls~N~l~ 461 (533)
+|+.++|+.|.+....|+.++ .-+.|.+|.+++|.+.
T Consensus 93 ~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 93 RLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 466666777766655555433 3456667777766664
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.65 E-value=0.024 Score=32.90 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.2
Q ss_pred CCCEEEeecccCcccCchhHHh
Q 009515 496 KLQLVLLNNNLLEGRVPEELYS 517 (533)
Q Consensus 496 ~L~~L~L~~N~l~g~lP~~l~~ 517 (533)
+|++|+|++|+++ .+|..+++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 5899999999999 99988654
No 66
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.43 E-value=0.025 Score=63.20 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=75.0
Q ss_pred ceeEEEEEEeCCCCCcc-ccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCC--ccCCCCcCC
Q 009515 422 TAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP--DSLTSSSKL 497 (533)
Q Consensus 422 ~~~~L~~L~Ls~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP--~~~~~l~~L 497 (533)
.++.|+.|.+++-.+.. ....-..++++|..||+|+.+++ .+ .++++ ++|+.|.+.+=.+. .-. ..+.+|++|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKL 222 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCC-chhhHHHHhcccCC
Confidence 46779999999988753 23444568899999999999997 44 56677 88998888776665 212 246689999
Q ss_pred CEEEeecccCcccCc---hhH----HhcccCCcEEEccCCCC
Q 009515 498 QLVLLNNNLLEGRVP---EEL----YSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 498 ~~L~L~~N~l~g~lP---~~l----~~l~~~L~~L~ls~N~l 532 (533)
+.||++..+.. ..+ ... ..++ .|+.||.|++.+
T Consensus 223 ~vLDIS~~~~~-~~~~ii~qYlec~~~Lp-eLrfLDcSgTdi 262 (699)
T KOG3665|consen 223 RVLDISRDKNN-DDTKIIEQYLECGMVLP-ELRFLDCSGTDI 262 (699)
T ss_pred Ceeeccccccc-cchHHHHHHHHhcccCc-cccEEecCCcch
Confidence 99999987765 233 111 1233 488999988754
No 67
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=92.99 E-value=0.06 Score=52.05 Aligned_cols=141 Identities=17% Similarity=0.183 Sum_probs=83.8
Q ss_pred hhhhhccCCCCccEEEccCCCCCCCCCCCceEeeCCC-ce--e--cCCcc-cccCCCCCCCCcCceeeecCCCCCCCcce
Q 009515 19 PLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDR-YY--T--SGATS-IVSEPLHFRFPHEKTLRYFPPSSGKKNCY 92 (533)
Q Consensus 19 ~~~~~~~~~~~~~~~IdCG~~~~~~d~~~~~w~~Dd~-~~--~--~g~~~-~~~~~~~~~~~~y~t~R~f~~~~~~~~cY 92 (533)
..+.+|+-+...-+.|+||++. .+|..|+.|-.|-. .+ . -|..- +.-....-....|+|.|+-.. .+.|
T Consensus 49 ~ga~Taa~~~svI~aVncGgda-avd~ygI~f~aD~~~~VGrasd~G~~l~i~~raeeed~ily~ter~nee----tFgy 123 (355)
T KOG3593|consen 49 RGAPTAALPSSVIPAVNCGGDA-AVDNYGIRFAADPLEGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEE----TFGY 123 (355)
T ss_pred ccCccccCchhhhheeccCChh-hhcccceEeeccccccccccCCccceeeccccCChhhhhhhhhcccchh----hhcc
Confidence 3445555555444689999974 47788999988541 11 0 11111 110111122468999999754 3789
Q ss_pred EeecCCCceEEEEEEeecCCCCCCCCCCceEEEEC-CEEEEeccCCCcccccCCceEEEEEEE-ecCCeEEEEEe
Q 009515 93 IIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVE-GTLVFSWRSPWPEGLARDGAYSDLFAF-VKDGELDLCFY 165 (533)
Q Consensus 93 ~l~~~~~~~ylvRl~F~~~nyd~~~~~~~Fdv~~~-~~~~l~~~~~~~~~~~~~~~~~e~i~~-~~~~~l~v~~~ 165 (533)
..|++..|.|-+=+.|..--|+.- +.-.|||.++ ...+.+..+++...+....+.-|+|.. ...+.+.+|-.
T Consensus 124 d~pik~dgdyalvlkfaevyF~~~-q~kvfdvrln~sh~vVk~ldi~~~vg~rg~AhDe~i~~~i~~gkls~~ge 197 (355)
T KOG3593|consen 124 DVPIKEDGDYALVLKFAEVYFKTC-QHKVFDVRLNCSHCVVKALDIFDQVGDRGKAHDEIIPCLIGQGKLSVCGE 197 (355)
T ss_pred cccccCCCceehhhhHHHHHHHhh-hhhheeeeeccceeEEeccchhhhcCCCcccccceEEEEEcCceEEEEee
Confidence 999988899988898932114432 2457999999 777777777765543222333344432 24445555544
No 68
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=92.97 E-value=0.071 Score=59.67 Aligned_cols=94 Identities=17% Similarity=0.180 Sum_probs=64.1
Q ss_pred ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCC-CCCCccCC-CCccEEEccCCccccCC--C----ccCCC
Q 009515 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-TLPSGLGQ-QSLVRLDLSDNQFTGSI--P----DSLTS 493 (533)
Q Consensus 422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~iP~~l~~-~~L~~L~Ls~N~l~g~i--P----~~~~~ 493 (533)
..++|..||+++.+++.. .+++.|++|+.|.+-+=.+.- ..-..+.. ++|+.||+|..+..... . +.-..
T Consensus 171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 346788899999888743 678888888888877766651 11124556 88999999887665221 1 12235
Q ss_pred CcCCCEEEeecccCcccCchhHHh
Q 009515 494 SSKLQLVLLNNNLLEGRVPEELYS 517 (533)
Q Consensus 494 l~~L~~L~L~~N~l~g~lP~~l~~ 517 (533)
|+.|+.||.+++.+.+.+-+.+-.
T Consensus 249 LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred CccccEEecCCcchhHHHHHHHHH
Confidence 788999999988887666555433
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.18 E-value=0.0054 Score=57.81 Aligned_cols=87 Identities=25% Similarity=0.228 Sum_probs=64.4
Q ss_pred hhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhccc
Q 009515 442 DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGV 520 (533)
Q Consensus 442 ~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~ 520 (533)
.++......+.||++.|++. .+-..+.. +.|+.|+++.|++. .+|..++++..++.+++.+|+++ ..|.+.+..+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34556667778888888876 44444555 77778888888877 77888888888888888888887 78888777765
Q ss_pred CCcEEEccCCCC
Q 009515 521 HGGAFEYVKTPN 532 (533)
Q Consensus 521 ~L~~L~ls~N~l 532 (533)
++.+++-+|+|
T Consensus 113 -~k~~e~k~~~~ 123 (326)
T KOG0473|consen 113 -PKKNEQKKTEF 123 (326)
T ss_pred -cchhhhccCcc
Confidence 77888777765
No 70
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.60 E-value=0.044 Score=53.71 Aligned_cols=85 Identities=25% Similarity=0.259 Sum_probs=64.8
Q ss_pred eEEEEEEeCCCCCcc--ccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCC-CccCCCCcCCCE
Q 009515 424 VVISQIDLGSQGLKG--YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI-PDSLTSSSKLQL 499 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g--~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~i-P~~~~~l~~L~~ 499 (533)
..++.+||.+|.++. .+..-+.+|+.|+.|+|+.|+|...|-..... .+|+.|-|.+..|.-.- -..+..+++++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 458889999999984 35556788999999999999998666544345 88999999888776432 234567788888
Q ss_pred EEeecccCc
Q 009515 500 VLLNNNLLE 508 (533)
Q Consensus 500 L~L~~N~l~ 508 (533)
|+++.|.+.
T Consensus 151 lHmS~N~~r 159 (418)
T KOG2982|consen 151 LHMSDNSLR 159 (418)
T ss_pred hhhccchhh
Confidence 999888554
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.85 E-value=0.13 Score=27.78 Aligned_cols=13 Identities=38% Similarity=0.437 Sum_probs=4.7
Q ss_pred CCCEEEeecccCc
Q 009515 496 KLQLVLLNNNLLE 508 (533)
Q Consensus 496 ~L~~L~L~~N~l~ 508 (533)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444444
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.55 E-value=0.19 Score=30.20 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=16.9
Q ss_pred CcCCCEEEeecccCcccCchhHHh
Q 009515 494 SSKLQLVLLNNNLLEGRVPEELYS 517 (533)
Q Consensus 494 l~~L~~L~L~~N~l~g~lP~~l~~ 517 (533)
|++|+.|+|++|+++ .+|...+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 456788888888888 77776553
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.55 E-value=0.19 Score=30.20 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=16.9
Q ss_pred CcCCCEEEeecccCcccCchhHHh
Q 009515 494 SSKLQLVLLNNNLLEGRVPEELYS 517 (533)
Q Consensus 494 l~~L~~L~L~~N~l~g~lP~~l~~ 517 (533)
|++|+.|+|++|+++ .+|...+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 456788888888888 77776553
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=0.03 Score=54.30 Aligned_cols=64 Identities=27% Similarity=0.307 Sum_probs=28.6
Q ss_pred ccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCc--cCCCCcCCCEEEeecccCcccCc
Q 009515 446 LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD--SLTSSSKLQLVLLNNNLLEGRVP 512 (533)
Q Consensus 446 ~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~--~~~~l~~L~~L~L~~N~l~g~lP 512 (533)
.|+.|+.|.||-|+++ .+- .+.. ++|++|+|..|.+. .+-+ -+.++++|+.|+|..|.-.|.-+
T Consensus 39 kMp~lEVLsLSvNkIs-sL~-pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag 105 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKIS-SLA-PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAG 105 (388)
T ss_pred hcccceeEEeeccccc-cch-hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccc
Confidence 3444444555555444 111 1222 44555555555444 2222 23455555555555555554443
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.44 E-value=0.24 Score=26.75 Aligned_cols=12 Identities=50% Similarity=0.609 Sum_probs=4.2
Q ss_pred CCEEEccCCCCC
Q 009515 450 LVNLNLSTNSLG 461 (533)
Q Consensus 450 L~~L~Ls~N~l~ 461 (533)
|+.|++++|+|+
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.04 E-value=1.1 Score=38.31 Aligned_cols=98 Identities=12% Similarity=0.179 Sum_probs=54.5
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
|+.+.+.. .+...-...|.++++|+.+.+.++ +. .++..... .+|+.+.+.+ .+...-...+..+++|+.+++.
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 66677764 566455566888888999998875 65 56655444 6899999876 4442333456678889999887
Q ss_pred cccCcccCchhHHhcccCCcEEEccCC
Q 009515 504 NNLLEGRVPEELYSIGVHGGAFEYVKT 530 (533)
Q Consensus 504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N 530 (533)
.| +. .++...+.-.. |+.+.+..+
T Consensus 90 ~~-~~-~i~~~~f~~~~-l~~i~~~~~ 113 (129)
T PF13306_consen 90 SN-IT-EIGSSSFSNCN-LKEINIPSN 113 (129)
T ss_dssp TT--B-EEHTTTTTT-T---EEE-TTB
T ss_pred cc-cc-EEchhhhcCCC-ceEEEECCC
Confidence 65 55 56666555443 777777643
No 77
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=86.54 E-value=0.03 Score=54.87 Aligned_cols=84 Identities=27% Similarity=0.307 Sum_probs=56.3
Q ss_pred EEEEEEeCCCCCcc-ccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCC-ccccC-CCccCCCCcCCCEE
Q 009515 425 VISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN-QFTGS-IPDSLTSSSKLQLV 500 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~~L 500 (533)
+|+.+||+...++. .+-.-+..+.+|+.|.|.+++|...|-..+.+ ..|+.|+|+.. .++.. .---+..|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47778888877763 23344667788888888888888777777777 88888888764 33311 00124466777777
Q ss_pred EeecccCc
Q 009515 501 LLNNNLLE 508 (533)
Q Consensus 501 ~L~~N~l~ 508 (533)
+|+.+.+.
T Consensus 266 NlsWc~l~ 273 (419)
T KOG2120|consen 266 NLSWCFLF 273 (419)
T ss_pred CchHhhcc
Confidence 77777554
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.12 E-value=0.59 Score=28.04 Aligned_cols=18 Identities=50% Similarity=0.776 Sum_probs=10.1
Q ss_pred CCCCEEEccCCCCCCCCCC
Q 009515 448 SNLVNLNLSTNSLGGTLPS 466 (533)
Q Consensus 448 ~~L~~L~Ls~N~l~g~iP~ 466 (533)
++|+.|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45566666666665 4444
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.12 E-value=0.59 Score=28.04 Aligned_cols=18 Identities=50% Similarity=0.776 Sum_probs=10.1
Q ss_pred CCCCEEEccCCCCCCCCCC
Q 009515 448 SNLVNLNLSTNSLGGTLPS 466 (533)
Q Consensus 448 ~~L~~L~Ls~N~l~g~iP~ 466 (533)
++|+.|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45566666666665 4444
No 80
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.33 E-value=0.054 Score=52.63 Aligned_cols=80 Identities=25% Similarity=0.326 Sum_probs=59.6
Q ss_pred cCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchh--HHhcccCC
Q 009515 447 LSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE--LYSIGVHG 522 (533)
Q Consensus 447 L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~--l~~l~~~L 522 (533)
|.+.+.|++-++.|+ .| ++.. +.|++|.||-|+++ ++ ..+..|++|++|.|..|.+. .+-+- +.+++. |
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIs-sL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlps-L 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKIS-SL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPS-L 90 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccc-cc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCch-h
Confidence 445566777777776 33 3444 89999999999999 33 24788999999999999998 44321 345555 9
Q ss_pred cEEEccCCCCC
Q 009515 523 GAFEYVKTPNC 533 (533)
Q Consensus 523 ~~L~ls~N~l~ 533 (533)
+.|-|..|+-|
T Consensus 91 r~LWL~ENPCc 101 (388)
T KOG2123|consen 91 RTLWLDENPCC 101 (388)
T ss_pred hhHhhccCCcc
Confidence 99999999865
No 81
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=82.44 E-value=1.8 Score=42.22 Aligned_cols=66 Identities=30% Similarity=0.513 Sum_probs=48.2
Q ss_pred hhhhccCCCCEEEccCCCCCCCCCCccC----C-CCccEEEccCCccccCCC-ccCC-------------CCcCCCEEEe
Q 009515 442 DKISLLSNLVNLNLSTNSLGGTLPSGLG----Q-QSLVRLDLSDNQFTGSIP-DSLT-------------SSSKLQLVLL 502 (533)
Q Consensus 442 ~~l~~L~~L~~L~Ls~N~l~g~iP~~l~----~-~~L~~L~Ls~N~l~g~iP-~~~~-------------~l~~L~~L~L 502 (533)
+.+..++.|+..+||.|.+....|+.++ + ..|+.|.|++|.+- ++- .-++ .-+.|++...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 4567889999999999999888887654 4 78999999999886 222 1122 2346777777
Q ss_pred ecccCc
Q 009515 503 NNNLLE 508 (533)
Q Consensus 503 ~~N~l~ 508 (533)
..|+|.
T Consensus 165 grNRle 170 (388)
T COG5238 165 GRNRLE 170 (388)
T ss_pred ccchhc
Confidence 777665
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=78.06 E-value=4.6 Score=34.33 Aligned_cols=84 Identities=13% Similarity=0.202 Sum_probs=49.9
Q ss_pred hhhhccCCCCEEEccCCCCCCCCCCccC-C-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcc
Q 009515 442 DKISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG 519 (533)
Q Consensus 442 ~~l~~L~~L~~L~Ls~N~l~g~iP~~l~-~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~ 519 (533)
..|.++++|+.+.+.. .+. .|+.... . .+|+.+.+..+ +...--..+.++++|+.+.+.+ .+. .++...+...
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~ 80 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNC 80 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccc
Confidence 3567788999999985 566 5665544 4 79999999886 6633334577888899999975 554 5666555533
Q ss_pred cCCcEEEccCC
Q 009515 520 VHGGAFEYVKT 530 (533)
Q Consensus 520 ~~L~~L~ls~N 530 (533)
..|+.+++..|
T Consensus 81 ~~l~~i~~~~~ 91 (129)
T PF13306_consen 81 TNLKNIDIPSN 91 (129)
T ss_dssp TTECEEEETTT
T ss_pred ccccccccCcc
Confidence 34889988665
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=77.66 E-value=0.82 Score=26.83 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=9.4
Q ss_pred cCCCEEEeecccCcccCc
Q 009515 495 SKLQLVLLNNNLLEGRVP 512 (533)
Q Consensus 495 ~~L~~L~L~~N~l~g~lP 512 (533)
++|++|+|++|+++..-.
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 456666666666654433
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=73.61 E-value=2.2 Score=25.84 Aligned_cols=16 Identities=50% Similarity=0.862 Sum_probs=7.8
Q ss_pred ccEEEccCCccccCCCc
Q 009515 473 LVRLDLSDNQFTGSIPD 489 (533)
Q Consensus 473 L~~L~Ls~N~l~g~iP~ 489 (533)
|+.|++++|+|+ .+|+
T Consensus 4 L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 4 LKELNVSNNQLT-SLPE 19 (26)
T ss_pred cceeecCCCccc-cCcc
Confidence 445555555555 4443
No 85
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=66.29 E-value=0.3 Score=48.10 Aligned_cols=83 Identities=19% Similarity=0.118 Sum_probs=55.7
Q ss_pred CCCCEEEccCCCCCCCCCC-ccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecc-cCcccCchh-HHhcccCCc
Q 009515 448 SNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN-LLEGRVPEE-LYSIGVHGG 523 (533)
Q Consensus 448 ~~L~~L~Ls~N~l~g~iP~-~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N-~l~g~lP~~-l~~l~~~L~ 523 (533)
+.|++||||+..++-.--. -+.+ .+|+.|.|.+++|...|-..+.+-..|+.|+|+.. .|+..--.- +..+.. |.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~-L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR-LD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhh-Hh
Confidence 3588999998888632111 2334 78888999999998888888888888999988854 355221222 233443 77
Q ss_pred EEEccCCC
Q 009515 524 AFEYVKTP 531 (533)
Q Consensus 524 ~L~ls~N~ 531 (533)
.|+|+.+-
T Consensus 264 ~LNlsWc~ 271 (419)
T KOG2120|consen 264 ELNLSWCF 271 (419)
T ss_pred hcCchHhh
Confidence 77777654
No 86
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=64.09 E-value=1.4e+02 Score=32.38 Aligned_cols=122 Identities=16% Similarity=0.220 Sum_probs=68.4
Q ss_pred CceEeeecceecCCCCCCCCchHHHHHHhhccC-----cceEEEEecCCCCcEEEEEEeeccccCcCCC-----ceeEEE
Q 009515 240 SIKSVTTRERITNTNQPPNYYPMKLYQTAIVSS-----GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKA-----GQRVFD 309 (533)
Q Consensus 240 ~~~~~~t~~~i~~~~~~~~~~P~~V~~TA~~~~-----~~l~~~~~~~~~~~y~v~lhF~ei~~~~~~~-----~~R~F~ 309 (533)
+|.--+.+.+++++...|...=+++||....-+ +.+.+.|-...+.+|--.+..-|+...+... -+-+-.
T Consensus 28 nw~~~~~n~t~~~~g~vpg~i~s~l~~~gii~~~~~~~n~ln~kwia~d~wtysr~frl~dl~~~~~~~l~ie~vdtia~ 107 (867)
T KOG2230|consen 28 NWEFSSSNKTVNGTGTVPGDIYSDLYASGIIDNPLFGENHLNLKWIAEDDWTYSRKFRLIDLDDTVGAFLEIESVDTIAT 107 (867)
T ss_pred ceEEecCCCceecCCCCCchHhHHHHhcccccCccccccccceeEEeccCccceeeeEEEEccccccceEEEeecceeEE
Confidence 344444556677776666666778888887651 3366665444456665444445655432211 134458
Q ss_pred EEECCeecccccccccCCCcceeeeeeeEeecCCceEEEEecccchhhhhhcccccc
Q 009515 310 ILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYA 366 (533)
Q Consensus 310 I~ing~~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~ 366 (533)
|++||+.+-.-+ .-+.++..+.+......|.+++.+..+..-+-..+-|..+
T Consensus 108 v~~n~~~v~~s~-----n~f~~y~~~vt~ii~~~n~i~~~f~ssv~yA~~~~~~~~k 159 (867)
T KOG2230|consen 108 VYVNGQKVLHSR-----NQFLPYHVNVTDIIAGENDITIKFKSSVKYAEKRADEYKK 159 (867)
T ss_pred EEEccEEEeecc-----ccceeEEEeEEEEecCCcceEEEeehhHHHHHHHHHhhhc
Confidence 999998543211 1244555556666566688887776655333344444433
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.84 E-value=3.8 Score=43.86 Aligned_cols=63 Identities=32% Similarity=0.373 Sum_probs=40.5
Q ss_pred ccCCCCEEEccCCCCCCCCCC--ccCC--CCccEEEccCC--ccccCCCccCCCC--cCCCEEEeecccCcccC
Q 009515 446 LLSNLVNLNLSTNSLGGTLPS--GLGQ--QSLVRLDLSDN--QFTGSIPDSLTSS--SKLQLVLLNNNLLEGRV 511 (533)
Q Consensus 446 ~L~~L~~L~Ls~N~l~g~iP~--~l~~--~~L~~L~Ls~N--~l~g~iP~~~~~l--~~L~~L~L~~N~l~g~l 511 (533)
+.+.+..+.|++|+|- .+-. .+.. ++|..|+|++| .+. ..+ ++.++ ..|++|.|.+|.+....
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~-el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKIS-SES-ELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhc-chh-hhhhhcCCCHHHeeecCCccccch
Confidence 4556788889999886 3332 2444 88999999998 333 222 23322 35788888888876433
No 88
>PF15240 Pro-rich: Proline-rich
Probab=59.03 E-value=5.5 Score=36.30 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHhhhhhc
Q 009515 8 SFFFLSLLLVLPLSLAS 24 (533)
Q Consensus 8 ~~~~~~~~~~~~~~~~~ 24 (533)
||++||.++||+|++|-
T Consensus 1 MLlVLLSvALLALSSAQ 17 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQ 17 (179)
T ss_pred ChhHHHHHHHHHhhhcc
Confidence 78888888876666543
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=56.42 E-value=9.5 Score=23.09 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=7.5
Q ss_pred CCCCEEEccCCCCC
Q 009515 448 SNLVNLNLSTNSLG 461 (533)
Q Consensus 448 ~~L~~L~Ls~N~l~ 461 (533)
++|+.|+|+.|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 90
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.98 E-value=2.3 Score=39.74 Aligned_cols=81 Identities=21% Similarity=0.153 Sum_probs=54.3
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCC-CCCccCC--CCccEEEccCCc-cccCCCccCCCCcCCCEE
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT-LPSGLGQ--QSLVRLDLSDNQ-FTGSIPDSLTSSSKLQLV 500 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~-iP~~l~~--~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~L 500 (533)
.++.++-++..+..+--+.+.++++|+.|.+.++.--+. --+.+++ ++|+.|+|++|. ++..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 488899999988876666777888888888877753211 1122334 889999999875 442222345677788877
Q ss_pred Eeecc
Q 009515 501 LLNNN 505 (533)
Q Consensus 501 ~L~~N 505 (533)
.+.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 76543
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=46.86 E-value=16 Score=22.33 Aligned_cols=13 Identities=54% Similarity=0.800 Sum_probs=6.8
Q ss_pred CCCEEEccCCCCC
Q 009515 449 NLVNLNLSTNSLG 461 (533)
Q Consensus 449 ~L~~L~Ls~N~l~ 461 (533)
+|+.|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555553
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.79 E-value=11 Score=40.36 Aligned_cols=61 Identities=25% Similarity=0.277 Sum_probs=41.0
Q ss_pred eEEEEEEeCCCCCccc--cchhhhccCCCCEEEccCC--CCCCCCCCccCC---CCccEEEccCCccccC
Q 009515 424 VVISQIDLGSQGLKGY--ISDKISLLSNLVNLNLSTN--SLGGTLPSGLGQ---QSLVRLDLSDNQFTGS 486 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~--~p~~l~~L~~L~~L~Ls~N--~l~g~iP~~l~~---~~L~~L~Ls~N~l~g~ 486 (533)
+.+..++|++|+|... +..--..-+.|..|+||+| .+. .-.++.+ ..|++|.|.+|.+...
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~--~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS--SESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc--chhhhhhhcCCCHHHeeecCCccccc
Confidence 4588899999998631 1111223467899999999 443 2223333 6789999999988744
No 93
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=32.87 E-value=13 Score=39.32 Aligned_cols=84 Identities=20% Similarity=0.121 Sum_probs=44.9
Q ss_pred eEEEEEEeCCC-CCccc----cchhhhccCCCCEEEccCCC-CCCCCCCccCC--CCccEEEccCCc-cccCCC-ccCCC
Q 009515 424 VVISQIDLGSQ-GLKGY----ISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ--QSLVRLDLSDNQ-FTGSIP-DSLTS 493 (533)
Q Consensus 424 ~~L~~L~Ls~n-~l~g~----~p~~l~~L~~L~~L~Ls~N~-l~g~iP~~l~~--~~L~~L~Ls~N~-l~g~iP-~~~~~ 493 (533)
+.|+.|+++.+ ..... .......+.+|+.|+++... ++...-..+.. ++|+.|.+.+.. ++..-= .....
T Consensus 214 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~ 293 (482)
T KOG1947|consen 214 PNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAER 293 (482)
T ss_pred chhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHh
Confidence 45778888762 11111 11234456778888888777 33222222232 578888766555 332111 11234
Q ss_pred CcCCCEEEeecccC
Q 009515 494 SSKLQLVLLNNNLL 507 (533)
Q Consensus 494 l~~L~~L~L~~N~l 507 (533)
++.|++|+|+.+..
T Consensus 294 ~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 294 CPSLRELDLSGCHG 307 (482)
T ss_pred cCcccEEeeecCcc
Confidence 66788888886654
No 94
>PRK06764 hypothetical protein; Provisional
Probab=32.51 E-value=39 Score=26.60 Aligned_cols=19 Identities=42% Similarity=0.573 Sum_probs=16.5
Q ss_pred CcceEeecCCCceEEEEEE
Q 009515 89 KNCYIIPNLPPGRYYIRTF 107 (533)
Q Consensus 89 ~~cY~l~~~~~~~ylvRl~ 107 (533)
.|.||+.-.++|+|.||..
T Consensus 73 lnkyti~f~kpg~yvirvn 91 (105)
T PRK06764 73 LNKYTIRFSKPGKYVIRVN 91 (105)
T ss_pred eeeeEEEecCCccEEEEEc
Confidence 4689999999999999973
No 95
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.61 E-value=34 Score=32.16 Aligned_cols=11 Identities=27% Similarity=0.138 Sum_probs=6.6
Q ss_pred cCCCEEEeecc
Q 009515 495 SKLQLVLLNNN 505 (533)
Q Consensus 495 ~~L~~L~L~~N 505 (533)
++|+.|+|++|
T Consensus 151 ~~L~~L~lsgC 161 (221)
T KOG3864|consen 151 PSLQDLDLSGC 161 (221)
T ss_pred cchheeeccCC
Confidence 45666666654
No 96
>CHL00108 psbJ photosystem II protein J
Probab=20.74 E-value=57 Score=21.76 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=10.8
Q ss_pred EEEEeecCCCCCCCC
Q 009515 104 IRTFTVYDNYDGKSH 118 (533)
Q Consensus 104 vRl~F~~~nyd~~~~ 118 (533)
+=.-|+||.|.|..+
T Consensus 24 ~vgiFfyGsY~GlGS 38 (40)
T CHL00108 24 LLGIFFYGSYSGLGS 38 (40)
T ss_pred eeeeEEeecccccCC
Confidence 335588999998764
No 97
>PRK02565 photosystem II reaction center protein J; Provisional
Probab=20.74 E-value=58 Score=21.61 Aligned_cols=14 Identities=21% Similarity=0.425 Sum_probs=10.4
Q ss_pred EEEeecCCCCCCCC
Q 009515 105 RTFTVYDNYDGKSH 118 (533)
Q Consensus 105 Rl~F~~~nyd~~~~ 118 (533)
=.-|+||.|.|..+
T Consensus 24 vgiFfyGsY~GlGS 37 (39)
T PRK02565 24 VGLFFYGSYAGLGS 37 (39)
T ss_pred eeeEEeecccccCC
Confidence 34588999998764
No 98
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=20.57 E-value=2.5 Score=45.33 Aligned_cols=35 Identities=37% Similarity=0.395 Sum_probs=16.7
Q ss_pred CCCEEEccCCCCCCC----CCCccCC-CCccEEEccCCcc
Q 009515 449 NLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQF 483 (533)
Q Consensus 449 ~L~~L~Ls~N~l~g~----iP~~l~~-~~L~~L~Ls~N~l 483 (533)
.|++|++..|.+++. +...+.+ ..|+.++++.|.+
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence 344455555554432 2233333 5555566666655
Done!