Query 009515
Match_columns 533
No_of_seqs 422 out of 3192
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 06:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwp_A Malectin, MGC80075; sug 99.9 4.5E-24 1.5E-28 195.9 11.6 148 30-183 6-172 (174)
2 2jwp_A Malectin, MGC80075; sug 99.9 2.5E-22 8.7E-27 184.2 8.0 153 199-367 5-171 (174)
3 1ogq_A PGIP-2, polygalacturona 99.7 8.1E-18 2.8E-22 169.2 13.4 153 373-532 2-161 (313)
4 4ecn_A Leucine-rich repeat pro 99.7 2.9E-16 1E-20 177.6 12.9 149 374-532 266-528 (876)
5 3rgz_A Protein brassinosteroid 99.7 4.3E-17 1.5E-21 183.7 6.0 85 447-532 631-716 (768)
6 4eco_A Uncharacterized protein 99.6 4.2E-16 1.4E-20 171.9 12.5 147 374-532 27-286 (636)
7 4fcg_A Uncharacterized protein 99.6 1.2E-16 4E-21 161.8 4.8 105 424-530 206-311 (328)
8 3rgz_A Protein brassinosteroid 99.6 2.7E-16 9.3E-21 177.1 7.0 194 335-533 419-693 (768)
9 1w8a_A SLIT protein; signaling 99.6 1.6E-15 5.3E-20 141.3 10.3 131 402-533 2-139 (192)
10 1ogq_A PGIP-2, polygalacturona 99.6 3.4E-16 1.2E-20 157.3 2.7 103 426-531 199-302 (313)
11 3e6j_A Variable lymphocyte rec 99.6 1.3E-14 4.6E-19 138.9 11.7 123 408-533 19-148 (229)
12 4fcg_A Uncharacterized protein 99.6 9.5E-16 3.2E-20 155.1 3.3 185 334-532 104-289 (328)
13 2wfh_A SLIT homolog 2 protein 99.5 1.7E-14 5.9E-19 134.4 11.3 130 400-532 2-138 (193)
14 2v9t_B SLIT homolog 2 protein 99.5 2E-14 7E-19 136.7 10.6 131 401-532 4-140 (220)
15 2o6r_A Variable lymphocyte rec 99.5 3.2E-14 1.1E-18 130.3 11.0 124 407-532 6-136 (177)
16 1p9a_G Platelet glycoprotein I 99.5 1E-14 3.4E-19 145.0 7.3 175 335-532 32-207 (290)
17 1ozn_A Reticulon 4 receptor; N 99.5 1.7E-14 5.7E-19 142.6 8.2 179 334-532 56-237 (285)
18 2v70_A SLIT-2, SLIT homolog 2 99.5 3.6E-14 1.2E-18 135.0 9.9 107 425-532 58-165 (220)
19 2o6s_A Variable lymphocyte rec 99.5 6.3E-14 2.2E-18 131.8 11.3 124 407-532 6-136 (208)
20 3m19_A Variable lymphocyte rec 99.5 1.2E-13 4E-18 134.0 11.2 155 335-532 36-191 (251)
21 4eco_A Uncharacterized protein 99.5 5.2E-14 1.8E-18 155.1 8.9 114 417-532 199-342 (636)
22 2z66_A Variable lymphocyte rec 99.5 1.8E-14 6E-19 143.9 4.0 179 334-532 78-260 (306)
23 1ozn_A Reticulon 4 receptor; N 99.5 5.5E-14 1.9E-18 138.8 7.5 180 335-533 33-214 (285)
24 2z66_A Variable lymphocyte rec 99.5 3E-14 1E-18 142.2 5.1 157 335-510 102-263 (306)
25 3rfs_A Internalin B, repeat mo 99.4 1.2E-13 4.2E-18 135.6 8.4 108 424-532 109-217 (272)
26 2o6q_A Variable lymphocyte rec 99.4 8.2E-14 2.8E-18 136.7 6.8 176 335-532 38-217 (270)
27 2v70_A SLIT-2, SLIT homolog 2 99.4 1.8E-13 6.1E-18 130.2 8.6 88 424-511 81-169 (220)
28 4ecn_A Leucine-rich repeat pro 99.4 2.2E-14 7.4E-19 162.3 1.1 107 422-532 489-607 (876)
29 2xot_A Amphoterin-induced prot 99.4 5.8E-13 2E-17 136.4 10.3 134 397-531 7-147 (361)
30 3vq2_A TLR4, TOLL-like recepto 99.4 1.1E-13 3.7E-18 151.3 4.4 110 422-532 446-557 (606)
31 1p9a_G Platelet glycoprotein I 99.4 2.4E-13 8.2E-18 135.0 6.5 172 335-533 11-185 (290)
32 1wwl_A Monocyte differentiatio 99.4 2.9E-13 1E-17 135.7 7.1 177 333-533 120-309 (312)
33 2v9t_B SLIT homolog 2 protein 99.4 8.5E-13 2.9E-17 125.5 9.8 107 424-532 56-164 (220)
34 3vq2_A TLR4, TOLL-like recepto 99.4 1.9E-13 6.6E-18 149.3 5.9 181 334-533 350-534 (606)
35 3oja_A Leucine-rich immune mol 99.4 4.5E-13 1.5E-17 142.9 7.9 105 423-532 143-249 (487)
36 3zyi_A Leucine-rich repeat-con 99.4 4.2E-13 1.4E-17 141.6 7.4 107 422-532 194-302 (452)
37 3zyj_A Leucine-rich repeat-con 99.4 6.3E-13 2.1E-17 139.7 7.7 107 422-532 183-291 (440)
38 3m19_A Variable lymphocyte rec 99.4 2.1E-12 7.3E-17 125.1 10.9 108 423-532 58-167 (251)
39 2ft3_A Biglycan; proteoglycan, 99.3 6.1E-13 2.1E-17 134.3 6.8 106 425-532 194-306 (332)
40 1xku_A Decorin; proteoglycan, 99.3 5.3E-13 1.8E-17 134.6 6.1 192 334-532 100-305 (330)
41 2z80_A TOLL-like receptor 2, v 99.3 3.9E-13 1.3E-17 137.0 4.8 192 335-532 77-313 (353)
42 3v47_A TOLL-like receptor 5B a 99.3 1.2E-12 4E-17 137.9 8.6 110 422-533 297-408 (455)
43 3zyj_A Leucine-rich repeat-con 99.3 4.8E-13 1.6E-17 140.7 5.3 104 426-532 162-267 (440)
44 3v47_A TOLL-like receptor 5B a 99.3 1.2E-12 4.2E-17 137.7 8.3 132 400-532 2-141 (455)
45 3o6n_A APL1; leucine-rich repe 99.3 1.9E-12 6.4E-17 133.7 9.4 191 334-532 117-330 (390)
46 3e6j_A Variable lymphocyte rec 99.3 2.8E-12 9.4E-17 122.7 9.8 105 425-532 65-171 (229)
47 2z63_A TOLL-like receptor 4, v 99.3 3.4E-13 1.2E-17 146.1 2.9 180 335-533 348-531 (570)
48 3g39_A Variable lymphocyte rec 99.3 5.5E-12 1.9E-16 114.8 10.6 107 402-508 3-115 (170)
49 2z62_A TOLL-like receptor 4, v 99.3 4.7E-12 1.6E-16 124.3 10.8 177 335-532 29-212 (276)
50 2je0_A Acidic leucine-rich nuc 99.3 8.8E-13 3E-17 117.0 5.0 82 425-508 43-126 (149)
51 3oja_B Anopheles plasmodium-re 99.3 2.4E-12 8.3E-17 140.7 9.6 191 334-532 123-336 (597)
52 3t6q_A CD180 antigen; protein- 99.3 1.7E-12 5.7E-17 141.9 8.1 106 426-532 402-512 (606)
53 2o6s_A Variable lymphocyte rec 99.3 5.6E-12 1.9E-16 118.4 9.9 106 425-532 53-160 (208)
54 2o6q_A Variable lymphocyte rec 99.3 6.6E-12 2.3E-16 123.0 10.7 106 425-532 38-145 (270)
55 2r9u_A Variable lymphocyte rec 99.3 8.5E-12 2.9E-16 114.0 10.6 100 428-532 16-117 (174)
56 3oja_B Anopheles plasmodium-re 99.3 1.3E-12 4.6E-17 142.7 6.1 79 450-532 234-313 (597)
57 3g39_A Variable lymphocyte rec 99.3 6.7E-12 2.3E-16 114.2 9.6 102 426-532 11-114 (170)
58 2ell_A Acidic leucine-rich nuc 99.3 1.5E-12 5.2E-17 117.9 5.3 107 421-532 46-159 (168)
59 2z7x_B TOLL-like receptor 1, v 99.3 3.2E-12 1.1E-16 137.1 8.3 108 423-532 347-480 (520)
60 2id5_A Lingo-1, leucine rich r 99.3 2.5E-12 8.6E-17 136.4 7.2 108 423-532 151-260 (477)
61 3a79_B TLR6, VLRB.59, TOLL-lik 99.3 6.8E-13 2.3E-17 143.9 2.8 105 424-532 403-509 (562)
62 3o53_A Protein LRIM1, AGAP0063 99.3 2E-12 6.8E-17 129.8 5.7 106 423-532 143-249 (317)
63 2ifg_A High affinity nerve gro 99.3 7E-12 2.4E-16 127.3 9.8 94 435-532 20-115 (347)
64 4ezg_A Putative uncharacterize 99.3 1.3E-12 4.5E-17 121.8 4.1 105 424-532 88-193 (197)
65 4b8c_D Glucose-repressible alc 99.3 3.1E-12 1.1E-16 142.8 7.7 106 423-533 223-329 (727)
66 3t6q_A CD180 antigen; protein- 99.3 3E-12 1E-16 139.9 7.2 219 306-533 255-489 (606)
67 3rfs_A Internalin B, repeat mo 99.3 9.9E-12 3.4E-16 121.9 10.2 109 424-533 85-194 (272)
68 2z7x_B TOLL-like receptor 1, v 99.3 3E-12 1E-16 137.2 6.7 157 334-513 324-486 (520)
69 3zyi_A Leucine-rich repeat-con 99.3 3.9E-12 1.3E-16 134.2 7.1 178 334-533 99-279 (452)
70 4g8a_A TOLL-like receptor 4; l 99.3 5.7E-12 1.9E-16 137.7 8.3 106 425-532 53-160 (635)
71 2z62_A TOLL-like receptor 4, v 99.3 8.7E-12 3E-16 122.3 8.7 109 423-532 51-161 (276)
72 2xot_A Amphoterin-induced prot 99.2 9.9E-12 3.4E-16 127.2 9.2 83 425-508 89-176 (361)
73 1dce_A Protein (RAB geranylger 99.2 8.6E-12 2.9E-16 135.2 9.2 180 336-533 351-546 (567)
74 2id5_A Lingo-1, leucine rich r 99.2 1.5E-11 5E-16 130.5 10.6 122 410-532 13-140 (477)
75 2r9u_A Variable lymphocyte rec 99.2 2.5E-11 8.4E-16 110.9 10.5 113 401-515 5-124 (174)
76 1ziw_A TOLL-like receptor 3; i 99.2 9.3E-12 3.2E-16 137.9 8.9 108 423-532 503-621 (680)
77 1xku_A Decorin; proteoglycan, 99.2 3.9E-11 1.3E-15 120.8 11.8 129 400-532 23-157 (330)
78 2z80_A TOLL-like receptor 2, v 99.2 1.2E-12 4E-17 133.5 0.5 177 335-532 53-234 (353)
79 2z81_A CD282 antigen, TOLL-lik 99.2 8.6E-12 3E-16 134.5 7.0 106 425-531 27-134 (549)
80 1h6t_A Internalin B; cell adhe 99.2 4.8E-12 1.6E-16 125.6 4.5 99 425-532 113-212 (291)
81 1h6u_A Internalin H; cell adhe 99.2 9.1E-12 3.1E-16 124.6 6.5 167 333-532 62-229 (308)
82 1h6u_A Internalin H; cell adhe 99.2 3.5E-12 1.2E-16 127.6 3.5 150 334-514 85-235 (308)
83 2ell_A Acidic leucine-rich nuc 99.2 1.3E-11 4.5E-16 111.7 6.9 105 424-532 24-132 (168)
84 4glp_A Monocyte differentiatio 99.2 5.5E-12 1.9E-16 126.2 4.7 105 422-533 195-307 (310)
85 2ft3_A Biglycan; proteoglycan, 99.2 3.2E-11 1.1E-15 121.6 10.3 128 400-532 25-159 (332)
86 3o53_A Protein LRIM1, AGAP0063 99.2 6E-12 2E-16 126.3 4.8 99 425-528 170-270 (317)
87 1dce_A Protein (RAB geranylger 99.2 4.8E-12 1.6E-16 137.2 4.3 105 420-527 459-567 (567)
88 1w8a_A SLIT protein; signaling 99.2 3.9E-11 1.3E-15 111.4 9.8 103 427-533 11-115 (192)
89 2z81_A CD282 antigen, TOLL-lik 99.2 1.4E-11 4.8E-16 132.8 7.8 108 425-533 99-209 (549)
90 3cvr_A Invasion plasmid antige 99.2 9.2E-12 3.1E-16 134.7 6.1 94 426-532 142-242 (571)
91 4g8a_A TOLL-like receptor 4; l 99.2 2.9E-11 1E-15 132.1 10.0 107 425-532 77-185 (635)
92 3oja_A Leucine-rich immune mol 99.2 9E-12 3.1E-16 132.8 5.3 168 334-533 58-227 (487)
93 2je0_A Acidic leucine-rich nuc 99.2 1.4E-11 4.6E-16 109.2 5.1 106 424-532 17-125 (149)
94 2wfh_A SLIT homolog 2 protein 99.2 8.1E-11 2.8E-15 109.4 10.3 102 427-533 13-115 (193)
95 2xwt_C Thyrotropin receptor; s 99.2 1.4E-11 4.9E-16 118.2 5.4 105 424-533 105-218 (239)
96 4b8c_D Glucose-repressible alc 99.2 2.7E-12 9.2E-17 143.3 0.1 91 425-518 248-339 (727)
97 2z63_A TOLL-like receptor 4, v 99.2 6.2E-11 2.1E-15 128.2 10.7 153 335-531 29-188 (570)
98 4fmz_A Internalin; leucine ric 99.2 1.2E-11 4.2E-16 125.3 4.8 168 335-533 178-346 (347)
99 3j0a_A TOLL-like receptor 5; m 99.2 3.7E-11 1.3E-15 136.6 9.3 108 425-532 98-216 (844)
100 1m9s_A Internalin B; cell inva 99.2 1.3E-11 4.5E-16 134.7 5.3 100 424-532 109-209 (605)
101 4ezg_A Putative uncharacterize 99.2 3.4E-11 1.2E-15 112.1 7.3 107 423-533 65-172 (197)
102 1a9n_A U2A', U2A'; complex (nu 99.2 3.4E-11 1.2E-15 110.0 6.7 101 425-531 43-151 (176)
103 1ziw_A TOLL-like receptor 3; i 99.1 7.1E-11 2.4E-15 130.8 10.0 106 425-532 50-157 (680)
104 2xwt_C Thyrotropin receptor; s 99.1 5.6E-11 1.9E-15 114.0 7.3 103 425-530 32-140 (239)
105 1xeu_A Internalin C; cellular 99.1 7.9E-11 2.7E-15 115.0 8.1 99 424-532 85-184 (263)
106 1wwl_A Monocyte differentiatio 99.1 4.2E-11 1.4E-15 119.8 5.8 108 425-532 150-265 (312)
107 3o6n_A APL1; leucine-rich repe 99.1 1.6E-10 5.5E-15 119.1 9.9 153 359-532 44-198 (390)
108 3j0a_A TOLL-like receptor 5; m 99.1 9.5E-11 3.2E-15 133.3 8.6 111 421-532 45-160 (844)
109 3g06_A SSPH2 (leucine-rich rep 99.1 1.4E-10 4.9E-15 126.8 9.6 94 426-533 203-297 (622)
110 1a9n_A U2A', U2A'; complex (nu 99.1 4.6E-11 1.6E-15 109.1 4.7 102 425-532 20-125 (176)
111 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 1.6E-10 5.4E-15 125.2 9.5 102 426-531 54-157 (562)
112 4fmz_A Internalin; leucine ric 99.1 8.7E-11 3E-15 119.0 6.9 168 335-533 156-324 (347)
113 2o6r_A Variable lymphocyte rec 99.1 5.4E-10 1.8E-14 101.9 11.0 104 426-533 9-113 (177)
114 3cvr_A Invasion plasmid antige 99.1 7.5E-11 2.6E-15 127.5 5.3 92 425-533 121-220 (571)
115 1h6t_A Internalin B; cell adhe 99.0 1.6E-10 5.4E-15 114.5 6.5 101 424-533 90-191 (291)
116 1m9s_A Internalin B; cell inva 99.0 1.5E-10 5.2E-15 126.2 6.8 102 423-533 86-188 (605)
117 3bz5_A Internalin-J, INLJ; leu 99.0 2E-10 6.9E-15 121.3 7.0 161 334-533 64-225 (457)
118 1o6v_A Internalin A; bacterial 99.0 1E-10 3.5E-15 123.7 4.8 101 423-532 286-387 (466)
119 3bz5_A Internalin-J, INLJ; leu 99.0 1.9E-10 6.4E-15 121.5 6.2 96 423-531 169-265 (457)
120 1jl5_A Outer protein YOPM; leu 99.0 1.1E-10 3.7E-15 123.2 3.7 97 424-532 131-227 (454)
121 1o6v_A Internalin A; bacterial 99.0 2.2E-10 7.5E-15 121.2 5.7 166 335-533 200-366 (466)
122 4glp_A Monocyte differentiatio 99.0 2.7E-10 9.1E-15 113.8 5.1 110 422-533 115-237 (310)
123 2ca6_A RAN GTPase-activating p 99.0 7.4E-12 2.5E-16 129.1 -6.6 108 425-533 188-316 (386)
124 1jl5_A Outer protein YOPM; leu 98.9 5E-10 1.7E-14 118.1 5.4 81 426-518 299-382 (454)
125 1ds9_A Outer arm dynein; leuci 98.9 3.4E-11 1.2E-15 112.2 -3.6 103 423-532 47-152 (198)
126 1xeu_A Internalin C; cellular 98.9 2.4E-09 8.3E-14 104.4 9.1 103 422-533 61-163 (263)
127 4ay9_X Follicle-stimulating ho 98.9 1.4E-09 4.9E-14 110.5 7.7 108 402-509 2-118 (350)
128 1ds9_A Outer arm dynein; leuci 98.9 2.7E-11 9.2E-16 112.9 -5.6 103 422-531 68-183 (198)
129 2ca6_A RAN GTPase-activating p 98.9 5.8E-10 2E-14 114.8 3.4 109 424-533 159-287 (386)
130 2ifg_A High affinity nerve gro 98.8 3.2E-09 1.1E-13 107.5 7.7 101 407-508 7-116 (347)
131 3g06_A SSPH2 (leucine-rich rep 98.8 4.8E-09 1.6E-13 114.7 8.3 94 424-533 181-274 (622)
132 2ast_B S-phase kinase-associat 98.7 1.6E-09 5.4E-14 109.0 -0.2 108 423-531 117-233 (336)
133 4ay9_X Follicle-stimulating ho 98.7 1.9E-09 6.6E-14 109.5 -0.2 99 426-530 130-233 (350)
134 2ast_B S-phase kinase-associat 98.7 3.4E-09 1.2E-13 106.5 1.3 109 423-531 92-206 (336)
135 3goz_A Leucine-rich repeat-con 98.7 6.1E-09 2.1E-13 106.3 3.1 108 425-532 52-179 (362)
136 3goz_A Leucine-rich repeat-con 98.6 1.2E-08 4.1E-13 104.1 3.6 108 425-532 23-150 (362)
137 1z7x_W Ribonuclease inhibitor; 98.5 1.4E-08 4.7E-13 106.7 -1.2 107 425-532 285-410 (461)
138 1z7x_W Ribonuclease inhibitor; 98.4 4E-08 1.4E-12 103.1 -0.4 110 424-533 256-383 (461)
139 3rw6_A Nuclear RNA export fact 98.3 2.8E-07 9.5E-12 89.5 3.2 81 444-527 166-258 (267)
140 3un9_A NLR family member X1; l 98.3 2.1E-07 7.1E-12 95.4 1.9 107 425-532 127-251 (372)
141 3ogk_B Coronatine-insensitive 98.0 8.5E-07 2.9E-11 96.1 0.8 109 424-533 403-526 (592)
142 3un9_A NLR family member X1; l 98.0 5.2E-07 1.8E-11 92.4 -1.0 109 424-533 101-224 (372)
143 1io0_A Tropomodulin; LRR prote 98.0 9.2E-07 3.1E-11 81.2 0.8 107 425-532 37-163 (185)
144 3rw6_A Nuclear RNA export fact 97.9 4.1E-06 1.4E-10 81.3 3.6 76 424-501 170-257 (267)
145 3sb4_A Hypothetical leucine ri 97.7 3.2E-05 1.1E-09 77.4 6.4 99 425-527 227-328 (329)
146 3ogk_B Coronatine-insensitive 97.7 3.4E-05 1.2E-09 83.3 5.8 100 426-528 222-326 (592)
147 2p1m_B Transport inhibitor res 97.6 5.2E-06 1.8E-10 89.8 -1.3 107 424-532 397-518 (594)
148 2ra8_A Uncharacterized protein 97.4 4.2E-05 1.4E-09 77.7 1.5 109 424-533 193-320 (362)
149 2p1m_B Transport inhibitor res 97.3 3.3E-05 1.1E-09 83.4 0.3 105 425-530 131-245 (594)
150 1io0_A Tropomodulin; LRR prote 97.3 5E-05 1.7E-09 69.4 0.8 93 439-532 27-135 (185)
151 3sb4_A Hypothetical leucine ri 97.2 0.00032 1.1E-08 69.9 6.0 82 446-532 224-309 (329)
152 2ra8_A Uncharacterized protein 96.6 0.001 3.6E-08 67.4 4.0 106 424-532 172-291 (362)
153 3rfe_A Platelet glycoprotein I 96.4 0.0045 1.5E-07 52.8 5.7 57 451-508 11-68 (130)
154 3e4g_A ATP synthase subunit S, 96.2 0.0011 3.9E-08 59.7 0.9 82 425-506 62-150 (176)
155 3rfe_A Platelet glycoprotein I 96.2 0.0078 2.7E-07 51.3 6.2 54 428-484 12-68 (130)
156 1pgv_A TMD-1, tropomodulin TMD 96.1 0.0022 7.4E-08 58.9 2.6 105 426-531 43-168 (197)
157 4fdw_A Leucine rich hypothetic 96.0 0.012 4.2E-07 60.3 7.7 102 424-532 180-283 (401)
158 4fdw_A Leucine rich hypothetic 96.0 0.01 3.6E-07 60.9 7.1 80 425-508 272-358 (401)
159 3e4g_A ATP synthase subunit S, 95.8 0.0034 1.2E-07 56.5 2.2 83 448-531 61-150 (176)
160 1pgv_A TMD-1, tropomodulin TMD 92.8 0.027 9.1E-07 51.6 0.9 90 440-530 33-136 (197)
161 4gt6_A Cell surface protein; l 92.4 0.37 1.3E-05 48.8 9.0 97 426-531 290-389 (394)
162 2w47_A Lipolytic enzyme, G-D-S 90.5 6.1 0.00021 33.6 13.5 93 87-183 39-132 (144)
163 4h09_A Hypothetical leucine ri 90.1 0.4 1.4E-05 48.1 6.4 77 426-505 265-343 (379)
164 4gt6_A Cell surface protein; l 89.5 0.33 1.1E-05 49.1 5.3 98 426-530 267-367 (394)
165 4fs7_A Uncharacterized protein 89.2 0.44 1.5E-05 48.2 6.0 92 426-524 299-392 (394)
166 2vzp_A Aocbm35, EXO-beta-D-glu 86.6 11 0.00038 31.0 12.3 90 86-179 37-127 (127)
167 4fs7_A Uncharacterized protein 84.4 1 3.5E-05 45.4 5.5 83 442-530 291-376 (394)
168 2w3j_A Carbohydrate binding mo 83.3 16 0.00056 31.0 12.0 92 87-183 38-130 (145)
169 4h09_A Hypothetical leucine ri 82.8 2.9 0.0001 41.6 8.1 100 425-530 241-343 (379)
170 2w87_A Esterase D, XYL-CBM35; 75.6 20 0.00069 30.1 10.0 91 87-181 38-130 (139)
171 2wz8_A Cellulosome protein doc 73.4 19 0.00064 31.1 9.3 91 90-182 49-149 (156)
172 2vzp_A Aocbm35, EXO-beta-D-glu 64.9 25 0.00086 28.8 8.1 40 273-317 39-78 (127)
173 2w47_A Lipolytic enzyme, G-D-S 63.5 31 0.0011 29.0 8.6 39 273-316 40-78 (144)
174 2o14_A Hypothetical protein YX 61.8 65 0.0022 31.9 11.9 79 90-184 78-157 (375)
175 2w3j_A Carbohydrate binding mo 60.3 29 0.00099 29.4 7.7 44 273-321 39-82 (145)
176 2w87_A Esterase D, XYL-CBM35; 52.7 45 0.0015 27.9 7.6 40 273-317 39-78 (139)
177 2wz8_A Cellulosome protein doc 47.4 87 0.003 26.8 8.7 45 273-317 47-97 (156)
178 2y7l_A NT_ALS9-2, agglutinin-l 28.1 33 0.0011 33.0 3.0 62 153-230 237-299 (312)
No 1
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.90 E-value=4.5e-24 Score=195.92 Aligned_cols=148 Identities=17% Similarity=0.101 Sum_probs=112.4
Q ss_pred ccEEEccCCCCCCCCCCCceEeeCCCceecCCcccc------cCCCCCCCCcCceeeecCCCCCCCcceEeecCCCceEE
Q 009515 30 ASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIV------SEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYY 103 (533)
Q Consensus 30 ~~~~IdCG~~~~~~d~~~~~w~~Dd~~~~~g~~~~~------~~~~~~~~~~y~t~R~f~~~~~~~~cY~l~~~~~~~yl 103 (533)
..|+||||++.. +|..+|+|.+|+.+...|..... ......+..+|+|+|+||. ..+|.||+.++|+|+
T Consensus 6 ~~~~INcGg~~~-~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~----~~tY~f~v~~~G~Y~ 80 (174)
T 2jwp_A 6 VIWAVNAGGESH-VDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNED----SFGYDIPIKEEGEYV 80 (174)
T ss_dssp EEEEEEETSSSE-EETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCS----CEEEEEECCSCEEEE
T ss_pred EEEEEECCCCCc-cCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCC----CeEEEEEeCCCeEEE
Confidence 358999999753 56789999998654323322110 1111223568999999985 379999998889999
Q ss_pred EEEEeecCCCCCCCCCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEe-------------cCCeEEEEEeecCCC
Q 009515 104 IRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFV-------------KDGELDLCFYSFATD 170 (533)
Q Consensus 104 vRl~F~~~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~-------------~~~~l~v~~~~~~~~ 170 (533)
|||||..-.+... ..+.|||++++.+++++||++.+++...+.++|+.+.+ .++.|.|+|.|....
T Consensus 81 VrLhF~ei~~~~~-~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~~~~ 159 (174)
T 2jwp_A 81 LVLKFAEVYFAQS-QQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYD 159 (174)
T ss_dssp EEEEEECCSCCCS-SSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECSSSC
T ss_pred EEEEEeccccCCC-CCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEeccCCC
Confidence 9999986666554 47899999999999999998776655556778887653 567899999987677
Q ss_pred CceeeeEEEEEcC
Q 009515 171 PPVIASLEVQQID 183 (533)
Q Consensus 171 ~pfIs~iEl~~l~ 183 (533)
.||||||||++.+
T Consensus 160 ~a~inaIEI~~~~ 172 (174)
T 2jwp_A 160 NPKVCALFIMKGT 172 (174)
T ss_dssp SSSEEEEEEESSC
T ss_pred CcEEEEEEEEeCc
Confidence 8999999998753
No 2
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.86 E-value=2.5e-22 Score=184.22 Aligned_cols=153 Identities=21% Similarity=0.245 Sum_probs=110.8
Q ss_pred EEEeeeccCCCCCCCCCcCCCCCCCcccccCCCCCCCCCCCCceEeeecceecCCCCCCCCchHHHHHHhhccCcceEEE
Q 009515 199 VNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYN 278 (533)
Q Consensus 199 ~~~~R~n~G~~~~~~~~~~~dD~~dR~W~~d~~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~V~~TA~~~~~~l~~~ 278 (533)
++++|+||||+.. .|..+|.|.+|..|...+... . ....+... ..+.+|+.||||||.+..+++|.
T Consensus 5 ~~~~~INcGg~~~-------~d~~gr~w~~D~~~~~~g~~~---~--~~~~~~~~--~~~~~~~~lY~TaR~~~~~~tY~ 70 (174)
T 2jwp_A 5 KVIWAVNAGGESH-------VDVHGIHYRKDPLEGRVGRAS---D--YGMKLPIL--RSNPEDQVLYQTERYNEDSFGYD 70 (174)
T ss_dssp HEEEEEEETSSSE-------EETTTEEECSSCSSTTCCCCC---C--CCTTSCCS--SSCHHHHHTTTCCCCCCSCEEEE
T ss_pred cEEEEEECCCCCc-------cCCCCCEEcCCcCcccCCccc---c--cccceEec--ccCCCCchhhhhhccCCCCeEEE
Confidence 4689999998752 256899999998764211100 0 01111111 12336899999999887789999
Q ss_pred EecCCCCcEEEEEEeeccccCcCCCceeEEEEEECCe-ecccccccccCCCcceeeeeeeEee------------cCCce
Q 009515 279 LAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDIFNSVGSFAAYSWHYVAKN------------LSSTE 345 (533)
Q Consensus 279 ~~~~~~~~y~v~lhF~ei~~~~~~~~~R~F~I~ing~-~l~~~di~~~~~~~~~~~~~l~~l~------------l~~n~ 345 (533)
|+++++++|+|||||||+.. .+.++|+|||++||+ .++++||..+++...++.+.+.+.. ..++.
T Consensus 71 f~v~~~G~Y~VrLhF~ei~~--~~~~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~ 148 (174)
T 2jwp_A 71 IPIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGK 148 (174)
T ss_dssp EECCSCEEEEEEEEEECCSC--CCSSSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSE
T ss_pred EEeCCCeEEEEEEEEecccc--CCCCCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCe
Confidence 99998899999999999975 357899999999998 6789999887766555554443321 24568
Q ss_pred EEEEeccc-chhhhhhccccccc
Q 009515 346 LTVKLVPV-VGAALISGLENYAL 367 (533)
Q Consensus 346 L~~~l~~~-~~~~iLn~lEi~~l 367 (533)
|.++|.|. ...|++|||||++-
T Consensus 149 L~I~f~p~~~~~a~inaIEI~~~ 171 (174)
T 2jwp_A 149 LSVEFVKGYYDNPKVCALFIMKG 171 (174)
T ss_dssp EEEEEECSSSCSSSEEEEEEESS
T ss_pred EEEEEeccCCCCcEEEEEEEEeC
Confidence 99999875 34599999999863
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.74 E-value=8.1e-18 Score=169.18 Aligned_cols=153 Identities=23% Similarity=0.391 Sum_probs=125.4
Q ss_pred CCChhHHHHHHHHHHhcCCCC-CCCCCC--CCCCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCcc--ccchhhhcc
Q 009515 373 STVPEQVIAMRALKESLRVPD-RMGWNG--DPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG--YISDKISLL 447 (533)
Q Consensus 373 ~~~p~~~~~l~~lk~~~~~~~-~~~w~g--dpc~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g--~~p~~l~~L 447 (533)
.+.++|..||+++|+.+..+. ..+|.. ++|. +.|.||.|..... ..+++.|+|++|++.+ .+|+.+..+
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~----~~w~gv~C~~~~~--~~~l~~L~L~~~~l~~~~~~~~~l~~l 75 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN----RTWLGVLCDTDTQ--TYRVNNLDLSGLNLPKPYPIPSSLANL 75 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT----TCSTTEEECCSSS--CCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred CCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc----CCCcceEeCCCCC--CceEEEEECCCCCccCCcccChhHhCC
Confidence 367889999999999986442 247854 4442 3499999975321 1358899999999998 889999999
Q ss_pred CCCCEEEccC-CCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEE
Q 009515 448 SNLVNLNLST-NSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 525 (533)
Q Consensus 448 ~~L~~L~Ls~-N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L 525 (533)
++|++|++++ |.+.+.+|..+.. ++|++|+|++|++++.+|..+.++++|++|+|++|++++.+|..+..+.. |++|
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L 154 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN-LVGI 154 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT-CCEE
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC-CCeE
Confidence 9999999995 8998889988888 88999999999998888888888888899999888888888888888776 8888
Q ss_pred EccCCCC
Q 009515 526 EYVKTPN 532 (533)
Q Consensus 526 ~ls~N~l 532 (533)
++++|++
T Consensus 155 ~L~~N~l 161 (313)
T 1ogq_A 155 TFDGNRI 161 (313)
T ss_dssp ECCSSCC
T ss_pred ECcCCcc
Confidence 8888876
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.65 E-value=2.9e-16 Score=177.61 Aligned_cols=149 Identities=19% Similarity=0.227 Sum_probs=125.7
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCCCCCC----CCCCCCCCC------------cceeecCCCCCceeEEEEEEeCCCCCc
Q 009515 374 TVPEQVIAMRALKESLRVPDRMGWNGDP----CAPTNWDAW------------EGITCHPNKDETAVVISQIDLGSQGLK 437 (533)
Q Consensus 374 ~~p~~~~~l~~lk~~~~~~~~~~w~gdp----c~~~~~~~w------------~gv~c~~~~~~~~~~L~~L~Ls~n~l~ 437 (533)
+..+|..||.++|+.+..+ +|+... +.|. .|.| .||.|... .+++.|+|+++++.
T Consensus 266 ~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~-~C~W~~~~~~~~w~~~~GV~C~~~-----~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK---NWRYYSGTINNTIH-SLNWNFNKELDMWGDQPGVDLDNN-----GRVTGLSLAGFGAK 336 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCC-CCSCCCSSCGGGTTCCTTEEECTT-----SCEEEEECTTTCCE
T ss_pred cchHHHHHHHHHHHHcCCC---CCCcCCCcccccCC-ccccccccccccccCcCceEecCC-----CCEEEEECccCCCC
Confidence 3467999999999998644 785432 1111 1789 99999862 25899999999999
Q ss_pred cccchhhhccCCCCEEEc-cCCCCCCC-----------------------------------------------------
Q 009515 438 GYISDKISLLSNLVNLNL-STNSLGGT----------------------------------------------------- 463 (533)
Q Consensus 438 g~~p~~l~~L~~L~~L~L-s~N~l~g~----------------------------------------------------- 463 (533)
|.+|++|++|++|+.|+| ++|.++|.
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999999999999999999 77765554
Q ss_pred -----------------------CCCccCC-CCccEEEccCCcccc-----------------CCCccCC--CCcCCCEE
Q 009515 464 -----------------------LPSGLGQ-QSLVRLDLSDNQFTG-----------------SIPDSLT--SSSKLQLV 500 (533)
Q Consensus 464 -----------------------iP~~l~~-~~L~~L~Ls~N~l~g-----------------~iP~~~~--~l~~L~~L 500 (533)
+|..++. ++|+.|+|++|+++| .+|+.++ +|++|+.|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 7888888 999999999999998 4999988 99999999
Q ss_pred EeecccCcccCchhHHhcccCCcEEEccCCC-C
Q 009515 501 LLNNNLLEGRVPEELYSIGVHGGAFEYVKTP-N 532 (533)
Q Consensus 501 ~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~-l 532 (533)
+|++|++.|.+|..++.+.. |+.|+|++|+ +
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~~-L~~L~Ls~N~~l 528 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLPE-LQSLNIACNRGI 528 (876)
T ss_dssp EEESCTTCCSCCGGGGGCSS-CCEEECTTCTTS
T ss_pred ECcCCCCCccChHHHhCCCC-CCEEECcCCCCc
Confidence 99999999999999999876 9999999997 5
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.65 E-value=4.3e-17 Score=183.66 Aligned_cols=85 Identities=27% Similarity=0.486 Sum_probs=49.9
Q ss_pred cCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEE
Q 009515 447 LSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAF 525 (533)
Q Consensus 447 L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L 525 (533)
+++|+.|+|++|+++|.+|..++. ++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|..+..+.. |+.|
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~-L~~L 709 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM-LTEI 709 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC-CSEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC-CCEE
Confidence 345555566666665556655555 55666666666666666666666666666666666666666655555554 5666
Q ss_pred EccCCCC
Q 009515 526 EYVKTPN 532 (533)
Q Consensus 526 ~ls~N~l 532 (533)
|+++|+|
T Consensus 710 ~ls~N~l 716 (768)
T 3rgz_A 710 DLSNNNL 716 (768)
T ss_dssp ECCSSEE
T ss_pred ECcCCcc
Confidence 6665543
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.65 E-value=4.2e-16 Score=171.87 Aligned_cols=147 Identities=17% Similarity=0.256 Sum_probs=120.7
Q ss_pred CChhHHHHHHHHHHhcCCCCC----------CCCCCC-CCCCCCCCCC---cceeecCCCCCceeEEEEEEeCCCCCccc
Q 009515 374 TVPEQVIAMRALKESLRVPDR----------MGWNGD-PCAPTNWDAW---EGITCHPNKDETAVVISQIDLGSQGLKGY 439 (533)
Q Consensus 374 ~~p~~~~~l~~lk~~~~~~~~----------~~w~gd-pc~~~~~~~w---~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~ 439 (533)
+...|..||.++++.+..++. .+|+.+ +| |.| .||.|+.. .+++.|+|+++++.|.
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~-----c~w~~~~GV~C~~~-----~~V~~L~L~~~~l~g~ 96 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL-----DMWGAQPGVSLNSN-----GRVTGLSLEGFGASGR 96 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG-----GGTTCCTTEEECTT-----CCEEEEECTTSCCEEE
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc-----ccccCCCCeEEcCC-----CCEEEEEecCcccCCc
Confidence 345688999999988754321 146432 22 688 99999754 2588999999999999
Q ss_pred cchhhhccCCCCEEEccCCC------------------------------------------------------------
Q 009515 440 ISDKISLLSNLVNLNLSTNS------------------------------------------------------------ 459 (533)
Q Consensus 440 ~p~~l~~L~~L~~L~Ls~N~------------------------------------------------------------ 459 (533)
+|+++++|++|+.|+|++|.
T Consensus 97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence 99999999999999998883
Q ss_pred ------------------CCCCCCCccCC-CCccEEEccCCccccC-----------------CCccCC--CCcCCCEEE
Q 009515 460 ------------------LGGTLPSGLGQ-QSLVRLDLSDNQFTGS-----------------IPDSLT--SSSKLQLVL 501 (533)
Q Consensus 460 ------------------l~g~iP~~l~~-~~L~~L~Ls~N~l~g~-----------------iP~~~~--~l~~L~~L~ 501 (533)
++| +|..++. ++|++|+|++|+++|. +|+.++ ++++|++|+
T Consensus 177 ~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 177 KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255 (636)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence 445 7888888 9999999999999986 899988 999999999
Q ss_pred eecccCcccCchhHHhcccCCcEEEccCCC-C
Q 009515 502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTP-N 532 (533)
Q Consensus 502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~-l 532 (533)
|++|++.|.+|..++++.. |+.|++++|+ +
T Consensus 256 L~~n~l~~~~p~~l~~l~~-L~~L~Ls~n~~l 286 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALPE-MQLINVACNRGI 286 (636)
T ss_dssp EECCTTCSSCCTTTTTCSS-CCEEECTTCTTS
T ss_pred ecCCcCCccChHHHhcCCC-CCEEECcCCCCC
Confidence 9999999999988888876 9999999997 5
No 7
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.62 E-value=1.2e-16 Score=161.83 Aligned_cols=105 Identities=17% Similarity=0.186 Sum_probs=63.3
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L 502 (533)
..|+.|+|++|.+++ +|+.+..+++|+.|++++|++.+.+|..+.. ++|+.|+|++|++.+.+|..++++++|+.|+|
T Consensus 206 ~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 345566666666663 4445666666666666666666666666555 66666666666666666666666666666666
Q ss_pred ecccCcccCchhHHhcccCCcEEEccCC
Q 009515 503 NNNLLEGRVPEELYSIGVHGGAFEYVKT 530 (533)
Q Consensus 503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N 530 (533)
++|++.|.+|..++++.. |+.+++..|
T Consensus 285 ~~n~~~~~iP~~l~~L~~-L~~l~l~~~ 311 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPA-NCIILVPPH 311 (328)
T ss_dssp TTCTTCCCCCGGGGGSCT-TCEEECCGG
T ss_pred CCCCchhhccHHHhhccC-ceEEeCCHH
Confidence 666666666666666554 566655544
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.61 E-value=2.7e-16 Score=177.14 Aligned_cols=194 Identities=22% Similarity=0.317 Sum_probs=136.7
Q ss_pred eeeEeecCCceEEEEecccchhhhhhccccccccCCCCC-CChhHHHHHHHHHHhcCCCCCCCCCC-CCCCCCCCCCCcc
Q 009515 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS-TVPEQVIAMRALKESLRVPDRMGWNG-DPCAPTNWDAWEG 412 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~-~~p~~~~~l~~lk~~~~~~~~~~w~g-dpc~~~~~~~w~g 412 (533)
.++.+++++|++++.+|..... +..++.+.+..+.+. .+|..+..+..|+......+. ..+ .|..-........
T Consensus 419 ~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGTIPSSLGS--LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND--LTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp TCCEEECCSSEEESCCCGGGGG--CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--CCSCCCGGGGGCTTCCE
T ss_pred CCCEEECcCCcccCcccHHHhc--CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc--ccCcCCHHHhcCCCCCE
Confidence 4667777777777666666655 666677777666643 566655555554432211110 000 0000000000111
Q ss_pred eeec--------CCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccC---------------
Q 009515 413 ITCH--------PNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG--------------- 469 (533)
Q Consensus 413 v~c~--------~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~--------------- 469 (533)
+... +.....++.|+.|+|++|.+.|.+|..++.+++|+.|++++|+++|.+|..+.
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~ 574 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence 1110 11123345689999999999999999999999999999999999988886442
Q ss_pred -------------------------------------------------------C-CCccEEEccCCccccCCCccCCC
Q 009515 470 -------------------------------------------------------Q-QSLVRLDLSDNQFTGSIPDSLTS 493 (533)
Q Consensus 470 -------------------------------------------------------~-~~L~~L~Ls~N~l~g~iP~~~~~ 493 (533)
. ++|+.|+|++|+++|.+|..+++
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence 2 46889999999999999999999
Q ss_pred CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
+++|+.|+|++|+++|.+|..++.+.. |+.|||++|+++
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~-L~~LdLs~N~l~ 693 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRG-LNILDLSSNKLD 693 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTT-CCEEECCSSCCE
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCC-CCEEECCCCccc
Confidence 999999999999999999999999887 999999999873
No 9
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=1.6e-15 Score=141.32 Aligned_cols=131 Identities=18% Similarity=0.246 Sum_probs=113.6
Q ss_pred CCCCCCCCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccch-hhhccCCCCEEEccCCCCCCCCCCccCC-CCcc
Q 009515 402 CAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISD-KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV 474 (533)
Q Consensus 402 c~~~~~~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~ 474 (533)
|...+.|.|..+.|....... ...++.|+|++|.+++..+. .+..+++|+.|+|++|++++..|..+.. ++|+
T Consensus 2 CP~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp CCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred cCCCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 444455899999998665432 22688999999999976665 4899999999999999999888999998 9999
Q ss_pred EEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 475 RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 475 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
.|+|++|++++..|..+.++++|+.|+|++|++++..|..+..+.. |+.|+|++|++.
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~ 139 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS-LTSLNLASNPFN 139 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT-CCEEECTTCCBC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC-CCEEEeCCCCcc
Confidence 9999999999988888999999999999999999888888888776 999999999863
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.58 E-value=3.4e-16 Score=157.26 Aligned_cols=103 Identities=26% Similarity=0.324 Sum_probs=83.0
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~ 504 (533)
|+.|+|++|.+++.+|..+..+++|+.|++++|++++.+|. +.. ++|+.|+|++|+++|.+|..+..+++|+.|+|++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 77788888888888888888888888888888888866665 555 8888888888888888888888888888888888
Q ss_pred ccCcccCchhHHhcccCCcEEEccCCC
Q 009515 505 NLLEGRVPEELYSIGVHGGAFEYVKTP 531 (533)
Q Consensus 505 N~l~g~lP~~l~~l~~~L~~L~ls~N~ 531 (533)
|+++|.+|.. ..+.. |+.|++++|+
T Consensus 278 N~l~~~ip~~-~~l~~-L~~l~l~~N~ 302 (313)
T 1ogq_A 278 NNLCGEIPQG-GNLQR-FDVSAYANNK 302 (313)
T ss_dssp SEEEEECCCS-TTGGG-SCGGGTCSSS
T ss_pred CcccccCCCC-ccccc-cChHHhcCCC
Confidence 8888888875 55555 8888888886
No 11
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=1.3e-14 Score=138.86 Aligned_cols=123 Identities=19% Similarity=0.212 Sum_probs=102.7
Q ss_pred CCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCC-ccCC-CCccEEEccC
Q 009515 408 DAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSD 480 (533)
Q Consensus 408 ~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~-~~L~~L~Ls~ 480 (533)
|.|.++.|....... ...|+.|+|++|.+++..|..+..+++|+.|+|++|+++ .+|. .+.. ++|+.|+|++
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred EeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence 799999998655332 345889999999999888889999999999999999997 5554 4566 9999999999
Q ss_pred CccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 481 NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 481 N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
|++++..+..+..+++|+.|+|++|+++ .+|..+..+.. |+.|+|++|+|.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~-L~~L~L~~N~l~ 148 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH-LTHLALDQNQLK 148 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTT-CSEEECCSSCCC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCC-CCEEECCCCcCC
Confidence 9999666666788999999999999998 88888887766 899999988763
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.55 E-value=9.5e-16 Score=155.12 Aligned_cols=185 Identities=17% Similarity=0.223 Sum_probs=142.4
Q ss_pred eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (533)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv 413 (533)
..++.+++++|.++ .+|..++. +..++.+++..+.+..+|..+..+.+|+......+. ..+ ..|.. +...
T Consensus 104 ~~L~~L~L~~n~l~-~lp~~~~~--l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~--~~~--~~p~~---~~~~ 173 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPDTMQQ--FAGLETLTLARNPLRALPASIASLNRLRELSIRACP--ELT--ELPEP---LAST 173 (328)
T ss_dssp TTCSEEEEESSCCC-CCCSCGGG--GTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEET--TCC--CCCSC---SEEE
T ss_pred CCCCEEECCCCCcc-chhHHHhc--cCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCC--Ccc--ccChh---Hhhc
Confidence 35777888888888 77777766 778888888888877888877666665443211100 000 01100 0000
Q ss_pred eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCC
Q 009515 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (533)
Q Consensus 414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~ 492 (533)
. .......+..|+.|+|++|+++ .+|..++.+++|+.|++++|+++ .+|..+.. ++|+.|+|++|++.+.+|..++
T Consensus 174 ~-~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~ 250 (328)
T 4fcg_A 174 D-ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250 (328)
T ss_dssp C--CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTT
T ss_pred c-chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhc
Confidence 0 0011122456899999999999 88999999999999999999999 57888888 9999999999999999999999
Q ss_pred CCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 493 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 493 ~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
++++|+.|+|++|++.+.+|..+..+.. |+.|++++|++
T Consensus 251 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~-L~~L~L~~n~~ 289 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTLPLDIHRLTQ-LEKLDLRGCVN 289 (328)
T ss_dssp CCCCCCEEECTTCTTCCBCCTTGGGCTT-CCEEECTTCTT
T ss_pred CCCCCCEEECCCCCchhhcchhhhcCCC-CCEEeCCCCCc
Confidence 9999999999999999999999999877 99999999975
No 13
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=134.42 Aligned_cols=130 Identities=17% Similarity=0.229 Sum_probs=109.3
Q ss_pred CCCCCCCCCCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCc
Q 009515 400 DPCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL 473 (533)
Q Consensus 400 dpc~~~~~~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L 473 (533)
..|...+.|.+..+.|....... ...++.|+|++|.++ .+|..+..+++|+.|+|++|.+++..+..+.. ++|
T Consensus 2 ~~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp --CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 35655555888889997655332 236899999999998 78899999999999999999999766677888 999
Q ss_pred cEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l 532 (533)
+.|+|++|++++..|..+..+++|+.|+|++|+++ .+|.. +..+.. |+.|++++|++
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~-L~~L~L~~N~~ 138 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSA-LSHLAIGANPL 138 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTT-CCEEECCSSCE
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCcc-ccEEEeCCCCe
Confidence 99999999999888888999999999999999999 67765 555555 99999999986
No 14
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=2e-14 Score=136.73 Aligned_cols=131 Identities=19% Similarity=0.179 Sum_probs=67.9
Q ss_pred CCCCCCCCCCcceeecCCCCCce-----eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCcc
Q 009515 401 PCAPTNWDAWEGITCHPNKDETA-----VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV 474 (533)
Q Consensus 401 pc~~~~~~~w~gv~c~~~~~~~~-----~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~ 474 (533)
+|...+.|.|..+.|........ ..++.|+|++|++++..+..|..+++|+.|+|++|++++..|..+.. ++|+
T Consensus 4 ~CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 4 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83 (220)
T ss_dssp CSCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred CCCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence 45555557888888865442211 23555666666665544445555555555555555555444555555 5555
Q ss_pred EEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 475 RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 475 ~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
.|+|++|++++..+..+.++++|+.|+|++|++++..|..+..+.. |+.|+|++|+|
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l 140 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN-LNLLSLYDNKL 140 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCC
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC-CCEEECCCCcC
Confidence 5555555555222223444555555555555555333333444333 55555555543
No 15
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.53 E-value=3.2e-14 Score=130.33 Aligned_cols=124 Identities=18% Similarity=0.206 Sum_probs=104.4
Q ss_pred CCCCcceeecCCCCC-----ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccC
Q 009515 407 WDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSD 480 (533)
Q Consensus 407 ~~~w~gv~c~~~~~~-----~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~ 480 (533)
.|.|.++.|...... ....|+.|++++|++++..+..+..+++|+.|++++|++++..+..+.. ++|+.|+|++
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 389999999865532 2346899999999999877777899999999999999999555555677 9999999999
Q ss_pred CccccCCCccCCCCcCCCEEEeecccCcccCchhH-HhcccCCcEEEccCCCC
Q 009515 481 NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL-YSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 481 N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l-~~l~~~L~~L~ls~N~l 532 (533)
|++++..+..+..+++|+.|+|++|+++ .+|... ..+.. |+.|++++|++
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~-L~~L~l~~N~~ 136 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTS-LQKIWLHTNPW 136 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTT-CCEEECCSSCB
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcc-cCEEEecCCCe
Confidence 9999777777899999999999999999 677665 45555 99999999986
No 16
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.52 E-value=1e-14 Score=144.98 Aligned_cols=175 Identities=19% Similarity=0.177 Sum_probs=129.6
Q ss_pred eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 009515 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~ 414 (533)
.++.+++++|+++...+..... +..++.+.+..+.+..++.. ..+..|+.. ... .+ ....
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L-~Ls----~N----------~l~~-- 91 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMP--YTRLTQLNLDRAELTKLQVD-GTLPVLGTL-DLS----HN----------QLQS-- 91 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTT--CTTCCEEECTTSCCCEEECC-SCCTTCCEE-ECC----SS----------CCSS--
T ss_pred CCCEEEcCCCcCCccCHHHhhc--CCCCCEEECCCCccCcccCC-CCCCcCCEE-ECC----CC----------cCCc--
Confidence 4667888888887555555555 77788888888877766653 222222221 111 10 0111
Q ss_pred ecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCC
Q 009515 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (533)
Q Consensus 415 c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~ 493 (533)
.+.....++.|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+.. ++|+.|+|++|++++..+..+..
T Consensus 92 -l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 170 (290)
T 1p9a_G 92 -LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170 (290)
T ss_dssp -CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTT
T ss_pred -CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcC
Confidence 1111223446889999999999888888999999999999999999555555666 99999999999999544455788
Q ss_pred CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+++|+.|+|++|+++ .+|..++.... |+.|+|++|++
T Consensus 171 l~~L~~L~L~~N~l~-~ip~~~~~~~~-L~~l~L~~Np~ 207 (290)
T 1p9a_G 171 LENLDTLLLQENSLY-TIPKGFFGSHL-LPFAFLHGNPW 207 (290)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCC-CSEEECCSCCB
T ss_pred cCCCCEEECCCCcCC-ccChhhccccc-CCeEEeCCCCc
Confidence 999999999999999 89999998876 99999999986
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.51 E-value=1.7e-14 Score=142.60 Aligned_cols=179 Identities=19% Similarity=0.164 Sum_probs=130.3
Q ss_pred eeeeEeecCCceEEEEecccchhhhhhccccccccCCC-CCCCh-hHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 009515 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPND-LSTVP-EQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (533)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~-~~~~p-~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~ 411 (533)
..++.+++++|+++...+..... +..++.+++..+. +..++ ..+..+.+|+... ... +...
T Consensus 56 ~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~-l~~--------------n~l~ 118 (285)
T 1ozn_A 56 RNLTILWLHSNVLARIDAAAFTG--LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH-LDR--------------CGLQ 118 (285)
T ss_dssp TTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE-CTT--------------SCCC
T ss_pred CCCCEEECCCCccceeCHhhcCC--ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE-CCC--------------CcCC
Confidence 35777888888887544555555 6778888888876 66663 3344344443321 111 0111
Q ss_pred ceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCcc
Q 009515 412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS 490 (533)
Q Consensus 412 gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~ 490 (533)
++. +.....+..|+.|+|++|.+++..+..+..+++|+.|++++|++++..+..+.. ++|+.|+|++|++++..|..
T Consensus 119 ~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 196 (285)
T 1ozn_A 119 ELG--PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196 (285)
T ss_dssp CCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred EEC--HhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhH
Confidence 110 011223456899999999999877777999999999999999999554555777 99999999999999988999
Q ss_pred CCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 491 LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 491 ~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+.++++|+.|+|++|++++..+..+..+.. |+.|++++|++
T Consensus 197 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~N~~ 237 (285)
T 1ozn_A 197 FRDLGRLMTLYLFANNLSALPTEALAPLRA-LQYLRLNDNPW 237 (285)
T ss_dssp TTTCTTCCEEECCSSCCSCCCHHHHTTCTT-CCEEECCSSCE
T ss_pred ccCcccccEeeCCCCcCCcCCHHHcccCcc-cCEEeccCCCc
Confidence 999999999999999999544445666665 99999999986
No 18
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=135.04 Aligned_cols=107 Identities=18% Similarity=0.207 Sum_probs=63.7
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
.|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..+..+++|+.|+|+
T Consensus 58 ~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 58 QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 3455555555555544445566666666666666665444444555 666666666666665556666666666666666
Q ss_pred cccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 504 NNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+|++++..|..+..+.. |+.|++++|++
T Consensus 138 ~N~l~~~~~~~~~~l~~-L~~L~L~~N~l 165 (220)
T 2v70_A 138 DNQITTVAPGAFDTLHS-LSTLNLLANPF 165 (220)
T ss_dssp TSCCCCBCTTTTTTCTT-CCEEECCSCCE
T ss_pred CCcCCEECHHHhcCCCC-CCEEEecCcCC
Confidence 66666444555555544 66666666654
No 19
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=6.3e-14 Score=131.79 Aligned_cols=124 Identities=19% Similarity=0.224 Sum_probs=82.6
Q ss_pred CCCCcceeecCCCCC-----ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccC
Q 009515 407 WDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSD 480 (533)
Q Consensus 407 ~~~w~gv~c~~~~~~-----~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~ 480 (533)
.|.|.++.|...... ....++.|+|++|++++..+..+..+++|+.|++++|++++..+..+.. ++|++|+|++
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 488999999765432 2234777888888887666666777777888888887777433334455 7777777777
Q ss_pred CccccCCCccCCCCcCCCEEEeecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515 481 NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 481 N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l 532 (533)
|++++..+..+..+++|+.|+|++|+++ .+|.. +..+.. |+.|++++|++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~-L~~L~l~~N~l 136 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQ-LKDLRLYQNQL 136 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTT-CCEEECCSSCC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCc-CCEEECCCCcc
Confidence 7777544455667777777777777777 34433 444444 77777777764
No 20
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=1.2e-13 Score=134.01 Aligned_cols=155 Identities=19% Similarity=0.177 Sum_probs=111.2
Q ss_pred eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 009515 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~ 414 (533)
.++.+++++|+++...+..... +..++.+.+..+.+..++.+. +
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~------------------------------~---- 79 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRG--LTKLTWLNLDYNQLQTLSAGV------------------------------F---- 79 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTT--CTTCCEEECTTSCCCCCCTTT------------------------------T----
T ss_pred CCCEEEccCCCcCccCHhHhcC--cccCCEEECCCCcCCccCHhH------------------------------h----
Confidence 4566777777776433334444 566777777666554332210 0
Q ss_pred ecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCC
Q 009515 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (533)
Q Consensus 415 c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~ 493 (533)
..+..|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+.. ++|+.|+|++|++++..|..++.
T Consensus 80 ------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 153 (251)
T 3m19_A 80 ------DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153 (251)
T ss_dssp ------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ------ccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCc
Confidence 11234788999999998777778888999999999999998544445666 88999999999999666667888
Q ss_pred CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+++|+.|+|++|++++..|..+..+.. |+.|++++|++
T Consensus 154 l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N~~ 191 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSVPHGAFDRLGK-LQTITLFGNQF 191 (251)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSCCB
T ss_pred CcCCCEEECCCCcCCccCHHHHhCCCC-CCEEEeeCCce
Confidence 999999999999998544445666655 89999999986
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.47 E-value=5.2e-14 Score=155.10 Aligned_cols=114 Identities=16% Similarity=0.237 Sum_probs=99.4
Q ss_pred CCCCCceeEEEEEEeCCCCCccc-----------------cchhhh--ccCCCCEEEccCCCCCCCCCCccCC-CCccEE
Q 009515 417 PNKDETAVVISQIDLGSQGLKGY-----------------ISDKIS--LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRL 476 (533)
Q Consensus 417 ~~~~~~~~~L~~L~Ls~n~l~g~-----------------~p~~l~--~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L 476 (533)
+...+.+..|+.|+|++|.++|. +|+.++ ++++|++|++++|++.|.+|..++. ++|+.|
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 33355567789999999999986 899988 9999999999999999999999998 999999
Q ss_pred EccCCc-ccc-CCCccCCCC------cCCCEEEeecccCcccCch--hHHhcccCCcEEEccCCCC
Q 009515 477 DLSDNQ-FTG-SIPDSLTSS------SKLQLVLLNNNLLEGRVPE--ELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 477 ~Ls~N~-l~g-~iP~~~~~l------~~L~~L~L~~N~l~g~lP~--~l~~l~~~L~~L~ls~N~l 532 (533)
+|++|+ ++| .+|..++.+ ++|+.|+|++|+++ .+|. .++.+.. |+.|++++|++
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~-L~~L~L~~N~l 342 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK-LGMLECLYNQL 342 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT-CCEEECCSCCC
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC-CCEEeCcCCcC
Confidence 999998 998 889888776 88999999999998 8888 7888776 89999998876
No 22
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.46 E-value=1.8e-14 Score=143.89 Aligned_cols=179 Identities=16% Similarity=0.137 Sum_probs=135.2
Q ss_pred eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChh--HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 009515 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE--QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (533)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~--~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~ 411 (533)
..++.+++++|.+. .+++.... +..++.+.+..+.+..++. .+..+.+|+... ... +...
T Consensus 78 ~~L~~L~Ls~n~i~-~l~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~-l~~--------------n~l~ 139 (306)
T 2z66_A 78 TSLKYLDLSFNGVI-TMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD-ISH--------------THTR 139 (306)
T ss_dssp SCCCEEECCSCSEE-EEEEEEET--CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEE-CTT--------------SCCE
T ss_pred cccCEEECCCCccc-cChhhcCC--CCCCCEEECCCCcccccccchhhhhccCCCEEE-CCC--------------CcCC
Confidence 46778888888887 56666655 7788888888887665553 233333332211 110 0111
Q ss_pred ceeecCCCCCceeEEEEEEeCCCCCcc-ccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCc
Q 009515 412 GITCHPNKDETAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD 489 (533)
Q Consensus 412 gv~c~~~~~~~~~~L~~L~Ls~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~ 489 (533)
++. +.....+..|+.|+|++|.+.+ .+|..+..+++|+.|++++|++++..|..+.. ++|+.|+|++|++++..+.
T Consensus 140 ~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 140 VAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp ECS--TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred ccc--hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 110 1112234568999999999987 68889999999999999999999777888888 9999999999999977777
Q ss_pred cCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 490 SLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 490 ~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
.+..+++|+.|+|++|++++..|..+..+..+|+.|++++|++
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 8999999999999999999888888888764599999999986
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.46 E-value=5.5e-14 Score=138.84 Aligned_cols=180 Identities=16% Similarity=0.133 Sum_probs=135.3
Q ss_pred eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCC-hhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTV-PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~-p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv 413 (533)
.++.+++++|+++...+..... +..++.+.+..+.+..+ |..+..+.+|+... +.. +. ....+
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~----n~---------~l~~~ 96 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRA--CRNLTILWLHSNVLARIDAAAFTGLALLEQLD-LSD----NA---------QLRSV 96 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE-CCS----CT---------TCCCC
T ss_pred CceEEEeeCCcCCccCHHHccc--CCCCCEEECCCCccceeCHhhcCCccCCCEEe-CCC----CC---------Ccccc
Confidence 5678889999998443344555 77889999988887766 44444444443321 111 00 00000
Q ss_pred eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCC
Q 009515 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (533)
Q Consensus 414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~ 492 (533)
. +.....+..|+.|+|++|.+.+..+..+..+++|++|++++|++++..+..+.. ++|+.|+|++|++++..+..+.
T Consensus 97 ~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 174 (285)
T 1ozn_A 97 D--PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174 (285)
T ss_dssp C--TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred C--HHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc
Confidence 0 111223346899999999999888899999999999999999999655566777 9999999999999966666799
Q ss_pred CCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 493 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 493 ~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
.+++|+.|+|++|++++..|..+..+.. |+.|++++|++.
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~ 214 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHPHAFRDLGR-LMTLYLFANNLS 214 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSCCS
T ss_pred CccccCEEECCCCcccccCHhHccCccc-ccEeeCCCCcCC
Confidence 9999999999999999877888888776 999999999873
No 24
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.45 E-value=3e-14 Score=142.21 Aligned_cols=157 Identities=17% Similarity=0.125 Sum_probs=100.3
Q ss_pred eeeEeecCCceEEEEecc--cchhhhhhccccccccCCCCCCChh-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 009515 335 HYVAKNLSSTELTVKLVP--VVGAALISGLENYALVPNDLSTVPE-QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~--~~~~~iLn~lEi~~l~~~~~~~~p~-~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~ 411 (533)
.++.+++++|+++ .+++ .... +..++.+.+..+.+...+. .+..+.+|+... ... +...
T Consensus 102 ~L~~L~l~~n~l~-~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-l~~--------------n~l~ 163 (306)
T 2z66_A 102 QLEHLDFQHSNLK-QMSEFSVFLS--LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK-MAG--------------NSFQ 163 (306)
T ss_dssp TCCEEECTTSEEE-SSTTTTTTTT--CTTCCEEECTTSCCEECSTTTTTTCTTCCEEE-CTT--------------CEEG
T ss_pred CCCEEECCCCccc-ccccchhhhh--ccCCCEEECCCCcCCccchhhcccCcCCCEEE-CCC--------------Cccc
Confidence 5677788888776 3332 2333 6677777777776543332 222222222211 100 1111
Q ss_pred ceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCcc
Q 009515 412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS 490 (533)
Q Consensus 412 gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~ 490 (533)
+. -.+.....+..|+.|+|++|.+++..|..+..+++|+.|++++|++++..+..+.. ++|+.|+|++|++++..|..
T Consensus 164 ~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 164 EN-FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GG-EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred cc-cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 10 01112233455788888888888777888888888888888888888555556666 88888888888888888888
Q ss_pred CCCCc-CCCEEEeecccCccc
Q 009515 491 LTSSS-KLQLVLLNNNLLEGR 510 (533)
Q Consensus 491 ~~~l~-~L~~L~L~~N~l~g~ 510 (533)
+..++ +|+.|+|++|++++.
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECS
T ss_pred HHhhhccCCEEEccCCCeecc
Confidence 88874 888888888888754
No 25
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.44 E-value=1.2e-13 Score=135.57 Aligned_cols=108 Identities=20% Similarity=0.165 Sum_probs=88.2
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L 502 (533)
..|+.|+|++|++++..+..+..+++|+.|++++|++++..|..+.. ++|+.|+|++|++++..|..++.+++|+.|+|
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 34788999999998777777888999999999999998555555667 88999999999999776667788899999999
Q ss_pred ecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
++|++++..|..+..+.. |+.|++++|++
T Consensus 189 ~~N~l~~~~~~~~~~l~~-L~~L~l~~N~~ 217 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTS-LQYIWLHDNPW 217 (272)
T ss_dssp CSSCCSCCCTTTTTTCTT-CCEEECCSSCB
T ss_pred CCCcCCccCHHHHhCCcC-CCEEEccCCCc
Confidence 999998655555666665 89999999876
No 26
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.44 E-value=8.2e-14 Score=136.66 Aligned_cols=176 Identities=23% Similarity=0.287 Sum_probs=124.0
Q ss_pred eeeEeecCCceEEEEecc-cchhhhhhccccccccCCCCCCChhHH-HHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcc
Q 009515 335 HYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPNDLSTVPEQV-IAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~-~~~~~iLn~lEi~~l~~~~~~~~p~~~-~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~g 412 (533)
.++.+++++|+++ .+++ .... +..++.+.+..+.+..++..+ ..+..|+... ... + ....
T Consensus 38 ~l~~L~l~~n~l~-~~~~~~~~~--l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~-l~~----n----------~l~~ 99 (270)
T 2o6q_A 38 DTKKLDLQSNKLS-SLPSKAFHR--LTKLRLLYLNDNKLQTLPAGIFKELKNLETLW-VTD----N----------KLQA 99 (270)
T ss_dssp TCSEEECCSSCCS-CCCTTSSSS--CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE-CCS----S----------CCCC
T ss_pred CCCEEECcCCCCC-eeCHHHhcC--CCCCCEEECCCCccCeeChhhhcCCCCCCEEE-CCC----C----------cCCc
Confidence 3556677777766 3333 3444 667777777777776666543 2233333221 111 0 0000
Q ss_pred eeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccC
Q 009515 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL 491 (533)
Q Consensus 413 v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~ 491 (533)
+. ......+..|+.|+|++|.+++..+..+..+++|+.|++++|.+++..+..+.. ++|+.|+|++|++++..+..+
T Consensus 100 ~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 177 (270)
T 2o6q_A 100 LP--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177 (270)
T ss_dssp CC--TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CC--HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHh
Confidence 00 001122346899999999999888888999999999999999999544445677 999999999999997666678
Q ss_pred CCCcCCCEEEeecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515 492 TSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 492 ~~l~~L~~L~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l 532 (533)
.++++|+.|+|++|+++ .+|.. +..+.. |+.|++++|++
T Consensus 178 ~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~-L~~L~l~~N~~ 217 (270)
T 2o6q_A 178 DKLTELKTLKLDNNQLK-RVPEGAFDSLEK-LKMLQLQENPW 217 (270)
T ss_dssp TTCTTCCEEECCSSCCS-CCCTTTTTTCTT-CCEEECCSSCB
T ss_pred ccCCCcCEEECCCCcCC-cCCHHHhccccC-CCEEEecCCCe
Confidence 99999999999999999 56655 555555 99999999986
No 27
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=1.8e-13 Score=130.21 Aligned_cols=88 Identities=23% Similarity=0.185 Sum_probs=51.4
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L 502 (533)
..|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..+..+++|+.|+|
T Consensus 81 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 81 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence 34555666666665555555556666666666666666555555555 56666666666666555555666666666666
Q ss_pred ecccCcccC
Q 009515 503 NNNLLEGRV 511 (533)
Q Consensus 503 ~~N~l~g~l 511 (533)
++|.+.+..
T Consensus 161 ~~N~l~c~c 169 (220)
T 2v70_A 161 LANPFNCNC 169 (220)
T ss_dssp CSCCEECSG
T ss_pred cCcCCcCCC
Confidence 666655433
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.41 E-value=2.2e-14 Score=162.33 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=63.1
Q ss_pred ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCC-CCC-CCCCccCC-C-------CccEEEccCCccccCCCc--
Q 009515 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGG-TLPSGLGQ-Q-------SLVRLDLSDNQFTGSIPD-- 489 (533)
Q Consensus 422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g-~iP~~l~~-~-------~L~~L~Ls~N~l~g~iP~-- 489 (533)
.+..|+.|+|++|.+.+.+|..+++|++|+.|+|++|+ ++| .+|..++. . +|+.|+|++|+++ .+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChh
Confidence 34456666666666666666666666666666666665 665 55554433 3 5666666666666 5555
Q ss_pred cCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 490 SLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 490 ~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
.++++++|+.|+|++|+++ .+| .+..+.. |+.|+|++|++
T Consensus 568 ~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~-L~~L~Ls~N~l 607 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK-LTDLKLDYNQI 607 (876)
T ss_dssp HHTTCTTCCEEECTTSCCC-BCC-CCCTTSE-ESEEECCSSCC
T ss_pred hhhcCCCCCEEECCCCCcc-cch-hhcCCCc-ceEEECcCCcc
Confidence 5555556666666655555 555 4444443 55555555544
No 29
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=5.8e-13 Score=136.37 Aligned_cols=134 Identities=19% Similarity=0.143 Sum_probs=64.7
Q ss_pred CCCCCCCCCCCCCCcceeecCCCCCce-----eEEEEEEeCCCCCccccchhhh-ccCCCCEEEccCCCCCCCCCCccCC
Q 009515 397 WNGDPCAPTNWDAWEGITCHPNKDETA-----VVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ 470 (533)
Q Consensus 397 w~gdpc~~~~~~~w~gv~c~~~~~~~~-----~~L~~L~Ls~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~iP~~l~~ 470 (533)
.....|...+.|.+..+.|........ ..++.|+|++|++++..+..+. .+++|+.|+|++|++++..|..+..
T Consensus 7 ~~~~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~ 86 (361)
T 2xot_A 7 RSVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86 (361)
T ss_dssp CCCTTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CcCCCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC
Confidence 344567666667777788865443211 1245556666655544444444 5555555555555555333333444
Q ss_pred -CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCC
Q 009515 471 -QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTP 531 (533)
Q Consensus 471 -~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~ 531 (533)
++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|..+..+.. |+.|+|++|+
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L~L~~N~ 147 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ-LQKLYLSQNQ 147 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT-CCEEECCSSC
T ss_pred CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCccc-CCEEECCCCc
Confidence 45555555555554333334444444444444444444322333333332 4444444443
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.39 E-value=1.1e-13 Score=151.31 Aligned_cols=110 Identities=15% Similarity=0.096 Sum_probs=94.5
Q ss_pred ceeEEEEEEeCCCCCcc-ccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCE
Q 009515 422 TAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQL 499 (533)
Q Consensus 422 ~~~~L~~L~Ls~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~ 499 (533)
.+..|+.|++++|.+.+ .+|..+..+++|+.|++++|++++..|..+.. ++|+.|+|++|++++.+|..+.++++|+.
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 44568889999999887 47888889999999999999998877888888 89999999999999888888999999999
Q ss_pred EEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 500 VLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 500 L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
|+|++|+++ .+|..+..+.++|+.|++++|++
T Consensus 526 L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 526 LDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EECTTSCCC-CEESCGGGSCTTCCEEECCSCCC
T ss_pred EECCCCcCc-ccCHhHhhhcccCcEEEccCCCc
Confidence 999999998 78888877765589999999986
No 31
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.39 E-value=2.4e-13 Score=134.96 Aligned_cols=172 Identities=22% Similarity=0.192 Sum_probs=127.5
Q ss_pred eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChh-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE-QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~-~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv 413 (533)
.+..+++++++++ .+|+... ..++.+.+..+.+..++. .+..+..|+... +.. +...++
T Consensus 11 ~l~~l~~~~~~l~-~ip~~~~----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~-L~~--------------n~l~~~ 70 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLN-LDR--------------AELTKL 70 (290)
T ss_dssp TCCEEECTTSCCS-SCCSCCC----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEE-CTT--------------SCCCEE
T ss_pred CccEEECCCCCCC-cCCCCCC----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEE-CCC--------------CccCcc
Confidence 3556777777776 5555443 467888888888776654 344444443321 111 112222
Q ss_pred eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCC
Q 009515 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (533)
Q Consensus 414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~ 492 (533)
... ..+..|+.|+|++|+++ .+|..+..+++|+.|++++|++++..|..+.. ++|+.|+|++|++++..+..+.
T Consensus 71 ~~~----~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 145 (290)
T 1p9a_G 71 QVD----GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145 (290)
T ss_dssp ECC----SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred cCC----CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc
Confidence 211 23456899999999998 78888999999999999999999665667888 9999999999999976666788
Q ss_pred CCcCCCEEEeecccCcccCchhHH-hcccCCcEEEccCCCCC
Q 009515 493 SSSKLQLVLLNNNLLEGRVPEELY-SIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 493 ~l~~L~~L~L~~N~l~g~lP~~l~-~l~~~L~~L~ls~N~l~ 533 (533)
.+++|+.|+|++|+++ .+|...+ .+.. |+.|+|++|+|.
T Consensus 146 ~l~~L~~L~L~~N~l~-~l~~~~~~~l~~-L~~L~L~~N~l~ 185 (290)
T 1p9a_G 146 PTPKLEKLSLANNNLT-ELPAGLLNGLEN-LDTLLLQENSLY 185 (290)
T ss_dssp TCTTCCEEECTTSCCS-CCCTTTTTTCTT-CCEEECCSSCCC
T ss_pred cccCCCEEECCCCcCC-ccCHHHhcCcCC-CCEEECCCCcCC
Confidence 9999999999999999 7777664 4554 999999999873
No 32
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.39 E-value=2.9e-13 Score=135.66 Aligned_cols=177 Identities=20% Similarity=0.187 Sum_probs=124.7
Q ss_pred eeeeeEeecCCceEEEEecccchhhhh-----hccccccccCCCCCCCh-hHHHHHHHHHHhcCCCCCCCCCCCCCCCCC
Q 009515 333 SWHYVAKNLSSTELTVKLVPVVGAALI-----SGLENYALVPNDLSTVP-EQVIAMRALKESLRVPDRMGWNGDPCAPTN 406 (533)
Q Consensus 333 ~~~l~~l~l~~n~L~~~l~~~~~~~iL-----n~lEi~~l~~~~~~~~p-~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~ 406 (533)
...++.+++++|+++.. |+..+. + ..++.+.+..+.+..++ ..+..+.+|+... ...
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~--l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~-Ls~------------- 182 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAE--LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD-LSD------------- 182 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHH--HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE-CCS-------------
T ss_pred CCCccEEEccCCCCcch-hHHHHH--HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE-CCC-------------
Confidence 34678888899988744 555544 3 78888899888877666 3333333333211 111
Q ss_pred CCCCcceeec--CCCCCceeEEEEEEeCCCCCcc--ccc-hhhhccCCCCEEEccCCCCCCCCCC-ccCC-CCccEEEcc
Q 009515 407 WDAWEGITCH--PNKDETAVVISQIDLGSQGLKG--YIS-DKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLS 479 (533)
Q Consensus 407 ~~~w~gv~c~--~~~~~~~~~L~~L~Ls~n~l~g--~~p-~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~-~~L~~L~Ls 479 (533)
+...+.... ......+..|+.|+|++|++++ .++ ..+..+++|+.|++++|++++.+|. .+.. ++|+.|+|+
T Consensus 183 -N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls 261 (312)
T 1wwl_A 183 -NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS 261 (312)
T ss_dssp -CTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred -CCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence 111111000 0001234568999999999983 233 3456889999999999999987764 4445 999999999
Q ss_pred CCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 480 DNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 480 ~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
+|+++ .+|..+. ++|+.|+|++|+++ .+|. +..+.. |+.|++++|++.
T Consensus 262 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~-~~p~-~~~l~~-L~~L~L~~N~l~ 309 (312)
T 1wwl_A 262 FTGLK-QVPKGLP--AKLSVLDLSYNRLD-RNPS-PDELPQ-VGNLSLKGNPFL 309 (312)
T ss_dssp TSCCS-SCCSSCC--SEEEEEECCSSCCC-SCCC-TTTSCE-EEEEECTTCTTT
T ss_pred CCccC-hhhhhcc--CCceEEECCCCCCC-CChh-HhhCCC-CCEEeccCCCCC
Confidence 99999 8998887 89999999999999 4577 777776 999999999974
No 33
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=8.5e-13 Score=125.46 Aligned_cols=107 Identities=21% Similarity=0.241 Sum_probs=94.6
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
..|+.|+|++|.+++..|..|.++++|+.|+|++|+++ .+|.. +.. ++|+.|+|++|++++..|..+..+++|+.|+
T Consensus 56 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 134 (220)
T 2v9t_B 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence 35889999999999988999999999999999999999 66665 456 9999999999999988899999999999999
Q ss_pred eecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
|++|++++..+..+..+.. |+.|+|++|++
T Consensus 135 L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~~ 164 (220)
T 2v9t_B 135 LYDNKLQTIAKGTFSPLRA-IQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCSCCCTTTTTTCTT-CCEEECCSSCE
T ss_pred CCCCcCCEECHHHHhCCCC-CCEEEeCCCCc
Confidence 9999999544445666665 99999999986
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.38 E-value=1.9e-13 Score=149.32 Aligned_cols=181 Identities=15% Similarity=0.048 Sum_probs=138.9
Q ss_pred eeeeEeecCCceEEEEe--cccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCc
Q 009515 334 WHYVAKNLSSTELTVKL--VPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (533)
Q Consensus 334 ~~l~~l~l~~n~L~~~l--~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~ 411 (533)
..++.+++++|++++.- +..... +..++.+.+..+.+..+|..+..+.+|+... ... +...
T Consensus 350 ~~L~~L~ls~n~l~~~~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~-l~~--------------n~l~ 412 (606)
T 3vq2_A 350 PSLSYLDLSRNALSFSGCCSYSDLG--TNSLRHLDLSFNGAIIMSANFMGLEELQHLD-FQH--------------STLK 412 (606)
T ss_dssp TTCCEEECCSSCEEEEEECCHHHHC--CSCCCEEECCSCSEEEECCCCTTCTTCCEEE-CTT--------------SEEE
T ss_pred CCCCEEECcCCccCCCcchhhhhcc--CCcccEeECCCCccccchhhccCCCCCCeeE-CCC--------------CccC
Confidence 35778889999888542 444444 6778888888887766765554444443322 111 0001
Q ss_pred ceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCC-CCCccCC-CCccEEEccCCccccCCCc
Q 009515 412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT-LPSGLGQ-QSLVRLDLSDNQFTGSIPD 489 (533)
Q Consensus 412 gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~-iP~~l~~-~~L~~L~Ls~N~l~g~iP~ 489 (533)
++.. ......+..|+.|++++|.+.+.+|..+..+++|+.|++++|.+++. +|..+.. ++|+.|+|++|++++..|.
T Consensus 413 ~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 491 (606)
T 3vq2_A 413 RVTE-FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491 (606)
T ss_dssp STTT-TTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred CccC-hhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence 1000 01122344689999999999999999999999999999999999984 7888888 9999999999999999999
Q ss_pred cCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 490 SLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 490 ~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
.+.++++|+.|+|++|++++..|..+..+.. |+.|++++|+|.
T Consensus 492 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~l~~N~l~ 534 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS-LSTLDCSFNRIE 534 (606)
T ss_dssp TTTTCTTCCEEECCSSCCSCEEGGGTTTCTT-CCEEECTTSCCC
T ss_pred hhcccccCCEEECCCCcCCCcCHHHccCCCc-CCEEECCCCcCc
Confidence 9999999999999999999888988988876 999999999874
No 35
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.37 E-value=4.5e-13 Score=142.86 Aligned_cols=105 Identities=19% Similarity=0.136 Sum_probs=81.1
Q ss_pred eeEEEEEEeCCCCCccccchhhh-ccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEE
Q 009515 423 AVVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L 500 (533)
++.|+.|+|++|.+++.+|..+. .+++|+.|+|++|.+++. |. ... ++|+.|+|++|++++ +|..+..+++|+.|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L 219 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWI 219 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEE
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEE
Confidence 45688888888888887777776 788888888888888744 33 234 888888888888885 44457888888888
Q ss_pred EeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 501 LLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 501 ~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+|++|+++ .+|..+..+.. |+.|++++|++
T Consensus 220 ~Ls~N~l~-~lp~~l~~l~~-L~~L~l~~N~l 249 (487)
T 3oja_A 220 SLRNNKLV-LIEKALRFSQN-LEHFDLRGNGF 249 (487)
T ss_dssp ECTTSCCC-EECTTCCCCTT-CCEEECTTCCB
T ss_pred EecCCcCc-ccchhhccCCC-CCEEEcCCCCC
Confidence 88888888 57877776665 88888888876
No 36
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.37 E-value=4.2e-13 Score=141.58 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=92.8
Q ss_pred ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEE
Q 009515 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (533)
Q Consensus 422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L 500 (533)
.+..|+.|+|++|++++. | .+..+++|+.|+|++|.+++..|..+.. ++|+.|+|++|++++..|..+.++++|+.|
T Consensus 194 ~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 194 GLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp TCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 345689999999999854 3 5889999999999999999888888888 999999999999998889999999999999
Q ss_pred EeecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515 501 LLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 501 ~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l 532 (533)
+|++|+++ .+|.. +..+.. |+.|+|++|++
T Consensus 272 ~L~~N~l~-~~~~~~~~~l~~-L~~L~L~~Np~ 302 (452)
T 3zyi_A 272 NLAHNNLS-SLPHDLFTPLRY-LVELHLHHNPW 302 (452)
T ss_dssp ECCSSCCS-CCCTTSSTTCTT-CCEEECCSSCE
T ss_pred ECCCCcCC-ccChHHhccccC-CCEEEccCCCc
Confidence 99999999 56655 455554 99999999985
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.36 E-value=6.3e-13 Score=139.74 Aligned_cols=107 Identities=21% Similarity=0.240 Sum_probs=93.2
Q ss_pred ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEE
Q 009515 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (533)
Q Consensus 422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L 500 (533)
.+..|+.|+|++|+++ .+| .+..+++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..+.++++|+.|
T Consensus 183 ~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 183 GLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp TCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred cccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence 4556899999999998 455 4889999999999999999877888888 999999999999998889999999999999
Q ss_pred EeecccCcccCchhH-HhcccCCcEEEccCCCC
Q 009515 501 LLNNNLLEGRVPEEL-YSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 501 ~L~~N~l~g~lP~~l-~~l~~~L~~L~ls~N~l 532 (533)
+|++|+++ .+|... ..+. +|+.|+|++|++
T Consensus 261 ~L~~N~l~-~~~~~~~~~l~-~L~~L~L~~Np~ 291 (440)
T 3zyj_A 261 NLAHNNLT-LLPHDLFTPLH-HLERIHLHHNPW 291 (440)
T ss_dssp ECTTSCCC-CCCTTTTSSCT-TCCEEECCSSCE
T ss_pred ECCCCCCC-ccChhHhcccc-CCCEEEcCCCCc
Confidence 99999999 566554 4555 499999999985
No 38
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.36 E-value=2.1e-12 Score=125.07 Aligned_cols=108 Identities=19% Similarity=0.205 Sum_probs=69.3
Q ss_pred eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
+..|+.|+|++|.+++..+..+..+++|+.|+|++|++++..+..+.. ++|+.|+|++|++++..+..+..+++|+.|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 345666666666666666666666667777777777776444444555 6777777777777744444566677777777
Q ss_pred eecccCcccCch-hHHhcccCCcEEEccCCCC
Q 009515 502 LNNNLLEGRVPE-ELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 502 L~~N~l~g~lP~-~l~~l~~~L~~L~ls~N~l 532 (533)
|++|+++ .+|. .+..+.. |+.|+|++|+|
T Consensus 138 Ls~N~l~-~~~~~~~~~l~~-L~~L~L~~N~l 167 (251)
T 3m19_A 138 LNTNQLQ-SIPAGAFDKLTN-LQTLSLSTNQL 167 (251)
T ss_dssp CCSSCCC-CCCTTTTTTCTT-CCEEECCSSCC
T ss_pred CcCCcCC-ccCHHHcCcCcC-CCEEECCCCcC
Confidence 7777777 3443 4555554 77777777765
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.35 E-value=6.1e-13 Score=134.35 Aligned_cols=106 Identities=19% Similarity=0.304 Sum_probs=82.0
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
.|+.|+|++|.+++..+..+..+++|+.|++++|++++..|..+.. ++|+.|+|++|+++ .+|..+..+++|+.|+++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~ 272 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLH 272 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECC
Confidence 5777888888888777778888888888888888888666667777 88888888888888 788888888888888888
Q ss_pred cccCcccCch-hHHhc-----ccCCcEEEccCCCC
Q 009515 504 NNLLEGRVPE-ELYSI-----GVHGGAFEYVKTPN 532 (533)
Q Consensus 504 ~N~l~g~lP~-~l~~l-----~~~L~~L~ls~N~l 532 (533)
+|+++ .+|. .+... ...|+.|++++|++
T Consensus 273 ~N~l~-~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 273 TNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp SSCCC-BCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CCCCC-ccChhHccccccccccccccceEeecCcc
Confidence 88888 4443 33332 22377888888875
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.35 E-value=5.3e-13 Score=134.63 Aligned_cols=192 Identities=16% Similarity=0.180 Sum_probs=123.8
Q ss_pred eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhH-HHHHHHHHHhcCCCCCCCCC-CCCCCCCCCCCCc
Q 009515 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWN-GDPCAPTNWDAWE 411 (533)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~-~~~l~~lk~~~~~~~~~~w~-gdpc~~~~~~~w~ 411 (533)
..++.+++++|+++ .++.... ..++.+.+..+.+..++.+ +..+.+++......+..... ..+..-.......
T Consensus 100 ~~L~~L~Ls~n~l~-~l~~~~~----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~ 174 (330)
T 1xku_A 100 VKLERLYLSKNQLK-ELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS 174 (330)
T ss_dssp TTCCEEECCSSCCS-BCCSSCC----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred CCCCEEECCCCcCC-ccChhhc----ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence 35778888888776 5554432 4677777877777766654 23333333221111100000 0000000000111
Q ss_pred ceeecCCCC-----CceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCcccc
Q 009515 412 GITCHPNKD-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG 485 (533)
Q Consensus 412 gv~c~~~~~-----~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g 485 (533)
.+....... .....|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..+.. ++|+.|+|++|+++
T Consensus 175 ~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~- 253 (330)
T 1xku_A 175 YIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV- 253 (330)
T ss_dssp EEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred EEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-
Confidence 111111111 11135888999999999888889999999999999999999766667777 99999999999999
Q ss_pred CCCccCCCCcCCCEEEeecccCcccCchhHH-hc-----ccCCcEEEccCCCC
Q 009515 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEELY-SI-----GVHGGAFEYVKTPN 532 (533)
Q Consensus 486 ~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~-~l-----~~~L~~L~ls~N~l 532 (533)
.+|..+..+++|+.|+|++|+++ .+|...+ .. ...|+.|++++|++
T Consensus 254 ~lp~~l~~l~~L~~L~l~~N~i~-~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 254 KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp SCCTTTTTCSSCCEEECCSSCCC-CCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred cCChhhccCCCcCEEECCCCcCC-ccChhhcCCcccccccccccceEeecCcc
Confidence 88989999999999999999998 5554433 21 13478999999986
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.34 E-value=3.9e-13 Score=137.03 Aligned_cols=192 Identities=15% Similarity=0.134 Sum_probs=122.7
Q ss_pred eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhH-HHHHHHHHHhcCCCCCCCCCCC-CCCCCCCCCCcc
Q 009515 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGD-PCAPTNWDAWEG 412 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~-~~~l~~lk~~~~~~~~~~w~gd-pc~~~~~~~w~g 412 (533)
.++.+++++|+++...+..... +..++.+++..+.+..+|.+ +..+.+|+......+...-... ... ........
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~-~~l~~L~~ 153 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSS--LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF-SHLTKLQI 153 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSC-TTCTTCCE
T ss_pred CCCEEECCCCccCccCHhhcCC--CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhh-ccCCCCcE
Confidence 4566666666666433334444 56666666666666666654 3334444332211111000000 000 00001111
Q ss_pred eeec---------CCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCC
Q 009515 413 ITCH---------PNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDN 481 (533)
Q Consensus 413 v~c~---------~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N 481 (533)
+... +.....+..|+.|++++|.+.+..|..+..+++|+.|++++|.++ .+|..+.. ++|+.|+|++|
T Consensus 154 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESC
T ss_pred EECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCC
Confidence 1111 112344567999999999999888899999999999999999986 66655443 88999999999
Q ss_pred ccccC-------------------------------CCccCCCCcCCCEEEeecccCcccCchhH-HhcccCCcEEEccC
Q 009515 482 QFTGS-------------------------------IPDSLTSSSKLQLVLLNNNLLEGRVPEEL-YSIGVHGGAFEYVK 529 (533)
Q Consensus 482 ~l~g~-------------------------------iP~~~~~l~~L~~L~L~~N~l~g~lP~~l-~~l~~~L~~L~ls~ 529 (533)
++++. +|+.+.++++|+.|+|++|+++ .+|..+ ..+.. |+.|++++
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~-L~~L~L~~ 310 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTS-LQKIWLHT 310 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTT-CCEEECCS
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCC-CCEEEeeC
Confidence 98864 3445677889999999999999 899886 56555 99999999
Q ss_pred CCC
Q 009515 530 TPN 532 (533)
Q Consensus 530 N~l 532 (533)
|++
T Consensus 311 N~~ 313 (353)
T 2z80_A 311 NPW 313 (353)
T ss_dssp SCB
T ss_pred CCc
Confidence 986
No 42
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.34 E-value=1.2e-12 Score=137.90 Aligned_cols=110 Identities=23% Similarity=0.214 Sum_probs=91.8
Q ss_pred ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEE
Q 009515 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (533)
Q Consensus 422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L 500 (533)
.+..|+.|+|++|.+.+..|..+..+++|+.|++++|.+++..|..+.. ++|+.|+|++|++++..|..+.++++|+.|
T Consensus 297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 4456888999999998888888889999999999999998766777777 899999999999998888889999999999
Q ss_pred EeecccCcccCchh-HHhcccCCcEEEccCCCCC
Q 009515 501 LLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 501 ~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l~ 533 (533)
+|++|+++ .+|.. +..+.. |+.|++++|++.
T Consensus 377 ~L~~N~l~-~~~~~~~~~l~~-L~~L~l~~N~l~ 408 (455)
T 3v47_A 377 ALDTNQLK-SVPDGIFDRLTS-LQKIWLHTNPWD 408 (455)
T ss_dssp ECCSSCCS-CCCTTTTTTCTT-CCEEECCSSCBC
T ss_pred ECCCCccc-cCCHhHhccCCc-ccEEEccCCCcc
Confidence 99999998 46654 455554 899999999863
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.34 E-value=4.8e-13 Score=140.66 Aligned_cols=104 Identities=24% Similarity=0.281 Sum_probs=47.9
Q ss_pred EEEEEeCCCCCcccc-chhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 426 ISQIDLGSQGLKGYI-SDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~-p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
|+.|+|++|...+.+ +..|.++++|+.|++++|+++ .+|. +.. ++|+.|+|++|++++..|..+.++++|+.|+|+
T Consensus 162 L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 239 (440)
T 3zyj_A 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239 (440)
T ss_dssp CCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred cCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECC
Confidence 444555542222222 223445555555555555554 3332 333 455555555555554444455555555555555
Q ss_pred cccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 504 NNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+|++++..|..+..+.. |+.|+|++|+|
T Consensus 240 ~n~l~~~~~~~~~~l~~-L~~L~L~~N~l 267 (440)
T 3zyj_A 240 QSQIQVIERNAFDNLQS-LVEINLAHNNL 267 (440)
T ss_dssp TCCCCEECTTSSTTCTT-CCEEECTTSCC
T ss_pred CCceeEEChhhhcCCCC-CCEEECCCCCC
Confidence 55555333333444333 55555555543
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.33 E-value=1.2e-12 Score=137.74 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=88.8
Q ss_pred CCCCCCCCCCCcceeecCCCCCce----eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCC-ccCC-CCc
Q 009515 400 DPCAPTNWDAWEGITCHPNKDETA----VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSL 473 (533)
Q Consensus 400 dpc~~~~~~~w~gv~c~~~~~~~~----~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~-~~L 473 (533)
+||...+.|....+.|........ ..|+.|+|++|.+++..|..+..+++|++|++++|.+.+.++. .+.. ++|
T Consensus 2 ~p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 2 DPGTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp -----CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred CCccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence 466554334444477875543222 3578888888888877788888888888888888888766644 4555 778
Q ss_pred cEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchh--HHhcccCCcEEEccCCCC
Q 009515 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE--LYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~--l~~l~~~L~~L~ls~N~l 532 (533)
++|+|++|++++..|..++++++|++|+|++|++++.+|.. +..+.. |+.|++++|++
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~-L~~L~L~~n~l 141 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTS-LEMLVLRDNNI 141 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTT-CCEEECCSSBC
T ss_pred CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCccc-CCEEECCCCcc
Confidence 88888888887777777777777777777777777655554 555554 77777777654
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.33 E-value=1.9e-12 Score=133.73 Aligned_cols=191 Identities=17% Similarity=0.140 Sum_probs=121.0
Q ss_pred eeeeEeecCCceEEEEecccc-hhhhhhccccccccCCCCCCChhH-HHHHHHHHHhcCCCCCCC-CCCCCCCCCC----
Q 009515 334 WHYVAKNLSSTELTVKLVPVV-GAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMG-WNGDPCAPTN---- 406 (533)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~-~~~iLn~lEi~~l~~~~~~~~p~~-~~~l~~lk~~~~~~~~~~-w~gdpc~~~~---- 406 (533)
..++.+++++|+++ .+++.. .. +..++.+.+..+.+..++++ +..+.+|+......+... .....+....
T Consensus 117 ~~L~~L~L~~n~l~-~l~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l 193 (390)
T 3o6n_A 117 PLLTVLVLERNDLS-SLPRGIFHN--TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 193 (390)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTT--CTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEEC
T ss_pred CCCCEEECCCCccC-cCCHHHhcC--CCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeec
Confidence 35778888888887 566543 44 67788888888877666543 444445543221111100 0000000000
Q ss_pred -CC---------CCcceeecCCCC-----CceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-
Q 009515 407 -WD---------AWEGITCHPNKD-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ- 470 (533)
Q Consensus 407 -~~---------~w~gv~c~~~~~-----~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~- 470 (533)
.+ ....+....... .....|+.|++++|.+++. +.+..+++|+.|++++|.+++..|..+..
T Consensus 194 ~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l 271 (390)
T 3o6n_A 194 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271 (390)
T ss_dssp CSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence 00 001111110000 0112467778888887753 56888888888888888888777888877
Q ss_pred CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 471 QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 471 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
++|+.|+|++|+++ .+|..+..+++|+.|+|++|+++ .+|..+..+.. |+.|++++|++
T Consensus 272 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~-L~~L~L~~N~i 330 (390)
T 3o6n_A 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR-LENLYLDHNSI 330 (390)
T ss_dssp SSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT-CSEEECCSSCC
T ss_pred ccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCc-CCEEECCCCcc
Confidence 88888888888888 46777778888888888888888 78887877765 88888888876
No 46
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.33 E-value=2.8e-12 Score=122.67 Aligned_cols=105 Identities=21% Similarity=0.255 Sum_probs=90.5
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
.|+.|+|++|++....+..+..+++|+.|+|++|++++..+..+.. ++|+.|+|++|+++ .+|..+..+++|+.|+|+
T Consensus 65 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 65 NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence 4888999999998666677899999999999999999555555677 99999999999999 899999999999999999
Q ss_pred cccCcccCch-hHHhcccCCcEEEccCCCC
Q 009515 504 NNLLEGRVPE-ELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 504 ~N~l~g~lP~-~l~~l~~~L~~L~ls~N~l 532 (533)
+|+++ .+|. .+..+.. |+.|++++|++
T Consensus 144 ~N~l~-~~~~~~~~~l~~-L~~L~l~~N~~ 171 (229)
T 3e6j_A 144 QNQLK-SIPHGAFDRLSS-LTHAYLFGNPW 171 (229)
T ss_dssp SSCCC-CCCTTTTTTCTT-CCEEECTTSCB
T ss_pred CCcCC-ccCHHHHhCCCC-CCEEEeeCCCc
Confidence 99999 5554 4566655 99999999986
No 47
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.32 E-value=3.4e-13 Score=146.06 Aligned_cols=180 Identities=18% Similarity=0.119 Sum_probs=127.7
Q ss_pred eeeEeecCCceEEEEe--cccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcc
Q 009515 335 HYVAKNLSSTELTVKL--VPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l--~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~g 412 (533)
.++.+++++|+++... +..... +..++.+.+..+.+..++..+..+.+|+... ... +...+
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~-l~~--------------n~l~~ 410 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFG--TTSLKYLDLSFNGVITMSSNFLGLEQLEHLD-FQH--------------SNLKQ 410 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHT--CSCCCEEECCSCSEEEEEEEEETCTTCCEEE-CTT--------------SEEES
T ss_pred CCCEEeCcCCccCccccccccccc--cCccCEEECCCCccccccccccccCCCCEEE-ccC--------------Ccccc
Confidence 4556666666665322 223333 5566666666666555554433333332211 110 00000
Q ss_pred eeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCC-CCCCCccCC-CCccEEEccCCccccCCCcc
Q 009515 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG-GTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS 490 (533)
Q Consensus 413 v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~-g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~ 490 (533)
+.- ......++.|+.|++++|.+.+.+|..+..+++|+.|++++|.++ +.+|..+.. ++|+.|+|++|++++..|..
T Consensus 411 ~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~ 489 (570)
T 2z63_A 411 MSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489 (570)
T ss_dssp CTT-SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred ccc-hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhh
Confidence 000 001223456899999999999999999999999999999999998 679998988 99999999999999888999
Q ss_pred CCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 491 LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 491 ~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
+..+++|+.|+|++|++++..|..+..+.. |+.|++++|++.
T Consensus 490 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~N~~~ 531 (570)
T 2z63_A 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTS-LQKIWLHTNPWD 531 (570)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSSCBC
T ss_pred hhcccCCCEEeCCCCcCCCCCHHHhhcccC-CcEEEecCCccc
Confidence 999999999999999999666666777766 999999999863
No 48
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.32 E-value=5.5e-12 Score=114.79 Aligned_cols=107 Identities=18% Similarity=0.214 Sum_probs=60.7
Q ss_pred CCCCCCCCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccE
Q 009515 402 CAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVR 475 (533)
Q Consensus 402 c~~~~~~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~ 475 (533)
|...+.|.|..+.|....... ...++.|+|++|++++..|..|..+++|+.|+|++|++++..|..+.. ++|+.
T Consensus 3 CP~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 3 CPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp CC-CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 433333666666665443221 123556666666666655666666666666666666666333333344 66666
Q ss_pred EEccCCccccCCCccCCCCcCCCEEEeecccCc
Q 009515 476 LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508 (533)
Q Consensus 476 L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~ 508 (533)
|+|++|++++..|..+..+++|+.|+|++|.++
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 666666666444444666666666666666665
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.32 E-value=4.7e-12 Score=124.28 Aligned_cols=177 Identities=14% Similarity=0.095 Sum_probs=109.5
Q ss_pred eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~-~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv 413 (533)
.++.+++++|+++...+..... +..++.+++..+.+..++.+ +..+.+|+... ... +...++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-L~~--------------n~l~~~ 91 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLI-LTG--------------NPIQSL 91 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTT--CTTCSEEECTTCCCCEECTTTTTTCTTCCEEE-CTT--------------CCCCEE
T ss_pred CccEEECCCCcccccCHhHhcc--ccCCcEEECCCCcCCccCHHHccCCcCCCEEE-CCC--------------CccCcc
Confidence 3556667777766332224444 55666667666665554432 22222222111 100 001111
Q ss_pred eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCC-CCCCccCC-CCccEEEccCCccccCCCccC
Q 009515 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG-TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL 491 (533)
Q Consensus 414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g-~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~ 491 (533)
. ......+..|+.|++++|.+.+..+..+..+++|+.|++++|.+++ .+|..+.. ++|+.|+|++|++++..+..+
T Consensus 92 ~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 92 A--LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp C--TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred C--hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 0 0111223457788888888887666678888888888888888875 36777777 888888888888887666667
Q ss_pred CCCcCCC----EEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 492 TSSSKLQ----LVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 492 ~~l~~L~----~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
..+.+|+ .|++++|+++ .+|...+.... |+.|++++|++
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~-~~~~~~~~~~~-L~~L~L~~n~l 212 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR-LKELALDTNQL 212 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCC-EECTTSSCSCC-EEEEECCSSCC
T ss_pred hhhhhccccceeeecCCCccc-ccCccccCCCc-ccEEECCCCce
Confidence 6666666 7888888888 55555555554 88888888876
No 50
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.32 E-value=8.8e-13 Score=116.99 Aligned_cols=82 Identities=23% Similarity=0.263 Sum_probs=40.7
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccC-CCccCCCCcCCCEEEe
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS-IPDSLTSSSKLQLVLL 502 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~L~L 502 (533)
.|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+.. ++|+.|++++|++++. .|..++.+++|+.|++
T Consensus 43 ~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l 120 (149)
T 2je0_A 43 ELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120 (149)
T ss_dssp TCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEEC
T ss_pred CCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeC
Confidence 345555555555533 44455555555555555555444444443 5555555555555531 2244555555555555
Q ss_pred ecccCc
Q 009515 503 NNNLLE 508 (533)
Q Consensus 503 ~~N~l~ 508 (533)
++|+++
T Consensus 121 ~~N~l~ 126 (149)
T 2je0_A 121 FNCEVT 126 (149)
T ss_dssp TTCGGG
T ss_pred cCCccc
Confidence 555555
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.32 E-value=2.4e-12 Score=140.66 Aligned_cols=191 Identities=17% Similarity=0.150 Sum_probs=123.2
Q ss_pred eeeeEeecCCceEEEEecccc-hhhhhhccccccccCCCCCCChh-HHHHHHHHHHhcCCCCCCC-CCCCCCCCC-----
Q 009515 334 WHYVAKNLSSTELTVKLVPVV-GAALISGLENYALVPNDLSTVPE-QVIAMRALKESLRVPDRMG-WNGDPCAPT----- 405 (533)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~-~~~iLn~lEi~~l~~~~~~~~p~-~~~~l~~lk~~~~~~~~~~-w~gdpc~~~----- 405 (533)
..+..+++++|.++ .+++.. .. +..++.+.+..+.+..+++ .+..+..|+......+... .....+...
T Consensus 123 ~~L~~L~L~~n~l~-~l~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l 199 (597)
T 3oja_B 123 PLLTVLVLERNDLS-SLPRGIFHN--TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV 199 (597)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTT--CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEEC
T ss_pred CCCCEEEeeCCCCC-CCCHHHhcc--CCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhc
Confidence 35777888888887 555543 44 6778888888887766554 3444555543221111100 000000000
Q ss_pred CCC---------CCcceeecCCCC-----CceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-
Q 009515 406 NWD---------AWEGITCHPNKD-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ- 470 (533)
Q Consensus 406 ~~~---------~w~gv~c~~~~~-----~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~- 470 (533)
..+ ....+.+..... .....|+.|+|++|.+++ +..+..+++|+.|+|++|.+++.+|..+..
T Consensus 200 ~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 277 (597)
T 3oja_B 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277 (597)
T ss_dssp CSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred ccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc
Confidence 000 001111111100 011247778888888876 367888889999999999998888888888
Q ss_pred CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 471 QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 471 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+.. |+.|+|++|+|
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~-L~~L~L~~N~l 336 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR-LENLYLDHNSI 336 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT-CSEEECCSSCC
T ss_pred cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCC-CCEEECCCCCC
Confidence 889999999999884 6777778888999999999888 78888877766 88888888876
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.31 E-value=1.7e-12 Score=141.89 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=53.9
Q ss_pred EEEEEeCCCCCccccchh-hhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccC---CCccCCCCcCCCEE
Q 009515 426 ISQIDLGSQGLKGYISDK-ISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS---IPDSLTSSSKLQLV 500 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~-l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~---iP~~~~~l~~L~~L 500 (533)
|+.|++++|.+.+..+.. +..+++|+.|++++|.+++..|..+.. ++|+.|+|++|++.+. .+..+..+++|+.|
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L 481 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEIL 481 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEE
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEE
Confidence 444445544444433322 444555555555555555444444444 5555555555555441 22344555555555
Q ss_pred EeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 501 LLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 501 ~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+|++|++++..|..+..+.. |+.|++++|++
T Consensus 482 ~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l 512 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAFTSLKM-MNHVDLSHNRL 512 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTT-CCEEECCSSCC
T ss_pred ECCCCccCccChhhhccccC-CCEEECCCCcc
Confidence 55555555444555555544 66666666654
No 53
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=5.6e-12 Score=118.38 Aligned_cols=106 Identities=24% Similarity=0.258 Sum_probs=87.4
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
.|+.|+|++|++++..+..+..+++|++|++++|++++..+..+.. ++|+.|+|++|++++..+..+..+++|+.|+|+
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (208)
T 2o6s_A 53 SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY 132 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence 4788999999999766667889999999999999999554455667 999999999999996666668899999999999
Q ss_pred cccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515 504 NNLLEGRVPEE-LYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 504 ~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l 532 (533)
+|+++ .+|.. +..+.. |+.|++++|++
T Consensus 133 ~N~l~-~~~~~~~~~l~~-L~~L~l~~N~~ 160 (208)
T 2o6s_A 133 QNQLK-SVPDGVFDRLTS-LQYIWLHDNPW 160 (208)
T ss_dssp SSCCS-CCCTTTTTTCTT-CCEEECCSCCB
T ss_pred CCccc-eeCHHHhccCCC-ccEEEecCCCe
Confidence 99999 45554 566655 99999999975
No 54
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.30 E-value=6.6e-12 Score=122.97 Aligned_cols=106 Identities=24% Similarity=0.229 Sum_probs=64.8
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L 502 (533)
.++.|+|++|++++..+..|..+++|++|++++|.++ .+|.. +.. ++|+.|+|++|++++..+..+.++++|+.|+|
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 3677777777777665566777777777777777776 44443 344 66777777777666444445566666666666
Q ss_pred ecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
++|++++..|..+..+.. |+.|++++|++
T Consensus 117 ~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l 145 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTK-LTYLSLGYNEL 145 (270)
T ss_dssp CSSCCCCCCTTTTTTCTT-CCEEECCSSCC
T ss_pred CCCccCeeCHHHhCcCcC-CCEEECCCCcC
Confidence 666666333333344433 55666655543
No 55
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=8.5e-12 Score=114.05 Aligned_cols=100 Identities=17% Similarity=0.211 Sum_probs=54.3
Q ss_pred EEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeeccc
Q 009515 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506 (533)
Q Consensus 428 ~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~ 506 (533)
.+++++|++. .+|..+. ++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..+..+.++++|+.|+|++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 3555555554 4444442 55666666666666554555555 566666666666664333334556666666666666
Q ss_pred CcccCchh-HHhcccCCcEEEccCCCC
Q 009515 507 LEGRVPEE-LYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 507 l~g~lP~~-l~~l~~~L~~L~ls~N~l 532 (533)
++ .+|.. +..+.. |+.|+|++|++
T Consensus 93 l~-~l~~~~~~~l~~-L~~L~L~~N~~ 117 (174)
T 2r9u_A 93 LK-SIPRGAFDNLKS-LTHIYLYNNPW 117 (174)
T ss_dssp CC-CCCTTTTTTCTT-CSEEECCSSCB
T ss_pred cc-eeCHHHhccccC-CCEEEeCCCCc
Confidence 65 34443 444433 66666666654
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.30 E-value=1.3e-12 Score=142.70 Aligned_cols=79 Identities=22% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEcc
Q 009515 450 LVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYV 528 (533)
Q Consensus 450 L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls 528 (533)
|+.|+|++|.+++ +..+.. ++|+.|+|++|++++.+|..++.+++|+.|+|++|+++ .+|..+..+.. |+.|+|+
T Consensus 234 L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~-L~~L~Ls 309 (597)
T 3oja_B 234 LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPT-LKVLDLS 309 (597)
T ss_dssp CCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCC-EEECSSSCCTT-CCEEECC
T ss_pred CCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCC-CCCcccccCCC-CcEEECC
Confidence 4444444444443 234555 77888888888888777778888888888888888887 46666655555 8888888
Q ss_pred CCCC
Q 009515 529 KTPN 532 (533)
Q Consensus 529 ~N~l 532 (533)
+|++
T Consensus 310 ~N~l 313 (597)
T 3oja_B 310 HNHL 313 (597)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8876
No 57
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=6.7e-12 Score=114.25 Aligned_cols=102 Identities=22% Similarity=0.263 Sum_probs=88.5
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~ 504 (533)
.+.|++++|+++ .+|..+ .++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..+.++++|+.|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 457999999999 477666 389999999999999877888888 9999999999999976666789999999999999
Q ss_pred ccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515 505 NLLEGRVPEE-LYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 505 N~l~g~lP~~-l~~l~~~L~~L~ls~N~l 532 (533)
|+++ .+|.. +..+.. |+.|+|++|++
T Consensus 88 N~l~-~~~~~~~~~l~~-L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLK-SIPRGAFDNLKS-LTHIWLLNNPW 114 (170)
T ss_dssp SCCC-CCCTTTTTTCTT-CCEEECCSSCB
T ss_pred CccC-EeCHHHhcCCCC-CCEEEeCCCCC
Confidence 9999 56654 666665 99999999986
No 58
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.29 E-value=1.5e-12 Score=117.93 Aligned_cols=107 Identities=21% Similarity=0.199 Sum_probs=88.5
Q ss_pred CceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCC--ccCCCCcCC
Q 009515 421 ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP--DSLTSSSKL 497 (533)
Q Consensus 421 ~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP--~~~~~l~~L 497 (533)
..++.|+.|+|++|.+++. ..+..+++|+.|++++|.+++.+|..+.. ++|+.|+|++|++++ +| ..+..+++|
T Consensus 46 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L 122 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD-ISTLEPLKKLECL 122 (168)
T ss_dssp GGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS-SGGGGGGSSCSCC
T ss_pred HhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc-chhHHHHhcCCCC
Confidence 3456788999999999865 77889999999999999999777777776 899999999999984 44 678899999
Q ss_pred CEEEeecccCcccCch----hHHhcccCCcEEEccCCCC
Q 009515 498 QLVLLNNNLLEGRVPE----ELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 498 ~~L~L~~N~l~g~lP~----~l~~l~~~L~~L~ls~N~l 532 (533)
+.|++++|+++ .+|. .+..+.. |+.|++++|.+
T Consensus 123 ~~L~l~~N~l~-~~~~~~~~~~~~l~~-L~~L~l~~n~~ 159 (168)
T 2ell_A 123 KSLDLFNCEVT-NLNDYRESVFKLLPQ-LTYLDGYDRED 159 (168)
T ss_dssp CEEECCSSGGG-TSTTHHHHHHTTCSS-CCEETTEETTS
T ss_pred CEEEeeCCcCc-chHHHHHHHHHhCcc-CcEecCCCCCh
Confidence 99999999998 5555 5666665 99999998875
No 59
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.29 E-value=3.2e-12 Score=137.05 Aligned_cols=108 Identities=23% Similarity=0.284 Sum_probs=58.5
Q ss_pred eeEEEEEEeCCCCCcc--ccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccC------------
Q 009515 423 AVVISQIDLGSQGLKG--YISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGS------------ 486 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g--~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~------------ 486 (533)
++.|+.|+|++|++++ .+|..+..+++|+.|++++|.+++.+|.. +.. ++|+.|+|++|++++.
T Consensus 347 l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L 426 (520)
T 2z7x_B 347 LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVL 426 (520)
T ss_dssp CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEE
T ss_pred CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEE
Confidence 3456666666666665 44556666666666666666666545544 333 4555555555555444
Q ss_pred ---------CCccCCCCcCCCEEEeecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515 487 ---------IPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 487 ---------iP~~~~~l~~L~~L~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l 532 (533)
+|..+..+++|+.|+|++|+++ .+|.. +..+.. |+.|++++|++
T Consensus 427 ~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~-L~~L~l~~N~~ 480 (520)
T 2z7x_B 427 DLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTS-LQKIWLHTNPW 480 (520)
T ss_dssp ECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTT-CCEEECCSSCB
T ss_pred ECCCCcccccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCc-ccEEECcCCCC
Confidence 4444445555555555555555 44444 333333 55555555543
No 60
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.28 E-value=2.5e-12 Score=136.36 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=78.7
Q ss_pred eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
+..|+.|+|++|.+++..+..+..+++|+.|++++|.+.+..+..+.. ++|+.|++++|.+.+.+|..+....+|+.|+
T Consensus 151 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 230 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230 (477)
T ss_dssp CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEE
Confidence 345677777777777666666777777777777777777655556666 7777788877777777777666666888888
Q ss_pred eecccCcccCch-hHHhcccCCcEEEccCCCC
Q 009515 502 LNNNLLEGRVPE-ELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 502 L~~N~l~g~lP~-~l~~l~~~L~~L~ls~N~l 532 (533)
|++|+++ .+|. .+..+.. |+.|+|++|++
T Consensus 231 l~~n~l~-~~~~~~~~~l~~-L~~L~Ls~n~l 260 (477)
T 2id5_A 231 ITHCNLT-AVPYLAVRHLVY-LRFLNLSYNPI 260 (477)
T ss_dssp EESSCCC-SCCHHHHTTCTT-CCEEECCSSCC
T ss_pred CcCCccc-ccCHHHhcCccc-cCeeECCCCcC
Confidence 8888888 6664 4555554 89999999876
No 61
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.28 E-value=6.8e-13 Score=143.91 Aligned_cols=105 Identities=25% Similarity=0.305 Sum_probs=77.6
Q ss_pred eEEEEEEeCCCCCccccch-hhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515 424 VVISQIDLGSQGLKGYISD-KISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~-~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L 502 (533)
+.|+.|+|++|.+++.+|. .+..+++|+.|++++|++++.+|..+. ++|+.|+|++|+++ .+|..+.++++|+.|+|
T Consensus 403 ~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480 (562)
T ss_dssp TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-TTCSEEECCSSCCC-CCCTTTTSSCCCSEEEC
T ss_pred CCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-CcCCEEECCCCcCc-ccChhhcCCCCCCEEEC
Confidence 4566777777777764444 366677777777777777766665543 57888888888888 78877778888888888
Q ss_pred ecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515 503 NNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 503 ~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l 532 (533)
++|+++ .+|.. +..+.. |+.|++++|++
T Consensus 481 ~~N~l~-~l~~~~~~~l~~-L~~L~l~~N~~ 509 (562)
T 3a79_B 481 ASNQLK-SVPDGVFDRLTS-LQYIWLHDNPW 509 (562)
T ss_dssp CSSCCC-CCCTTSTTTCTT-CCCEECCSCCB
T ss_pred CCCCCC-CCCHHHHhcCCC-CCEEEecCCCc
Confidence 888888 78877 666555 88888888876
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.28 E-value=2e-12 Score=129.84 Aligned_cols=106 Identities=19% Similarity=0.152 Sum_probs=90.3
Q ss_pred eeEEEEEEeCCCCCccccchhhh-ccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 423 AVVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p~~l~-~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
++.|+.|+|++|.+++..+..+. .+++|+.|++++|.++ .+|.....++|+.|+|++|+++ .+|..+..+++|+.|+
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 220 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWIS 220 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-EEECCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEE
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc-ccccccccccCCEEECCCCcCC-cchhhhcccCcccEEE
Confidence 45699999999999988777774 7899999999999998 4443332289999999999999 4666699999999999
Q ss_pred eecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
|++|+++ .+|..+..+.. |+.|++++|++
T Consensus 221 L~~N~l~-~l~~~~~~l~~-L~~L~l~~N~~ 249 (317)
T 3o53_A 221 LRNNKLV-LIEKALRFSQN-LEHFDLRGNGF 249 (317)
T ss_dssp CTTSCCC-EECTTCCCCTT-CCEEECTTCCC
T ss_pred CcCCccc-chhhHhhcCCC-CCEEEccCCCc
Confidence 9999999 78988877766 99999999987
No 63
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=7e-12 Score=127.29 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=73.2
Q ss_pred CCccccchhhhccCCCCEEEccC-CCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCc
Q 009515 435 GLKGYISDKISLLSNLVNLNLST-NSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVP 512 (533)
Q Consensus 435 ~l~g~~p~~l~~L~~L~~L~Ls~-N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP 512 (533)
+|+ .+|. |..+++|+.|+|++ |+|++..|..+.. ++|+.|+|++|+|++..|..|.+|++|+.|+|++|+|+ .+|
T Consensus 20 ~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~ 96 (347)
T 2ifg_A 20 ALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLS 96 (347)
T ss_dssp CCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCC
T ss_pred CCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeC
Confidence 555 4666 88888888888885 8888555566777 88888888888888877778888888888888888888 667
Q ss_pred hhHHhcccCCcEEEccCCCC
Q 009515 513 EELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 513 ~~l~~l~~~L~~L~ls~N~l 532 (533)
..++.... |+.|+|++|+|
T Consensus 97 ~~~~~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 97 WKTVQGLS-LQELVLSGNPL 115 (347)
T ss_dssp STTTCSCC-CCEEECCSSCC
T ss_pred HHHcccCC-ceEEEeeCCCc
Confidence 66666555 88888888875
No 64
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=1.3e-12 Score=121.78 Aligned_cols=105 Identities=11% Similarity=0.099 Sum_probs=92.6
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L 502 (533)
+.|+.|++++|.+++..+..+..+++|+.|++++|.+++..|..+.. ++|+.|+|++|++.+.+| .+..+++|+.|++
T Consensus 88 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l 166 (197)
T 4ezg_A 88 SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNI 166 (197)
T ss_dssp TTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEEC
T ss_pred CCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEEC
Confidence 45889999999999888999999999999999999999888888888 999999999998444777 6899999999999
Q ss_pred ecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
++|+++ .++ .+..+.. |+.|++++|++
T Consensus 167 ~~n~i~-~~~-~l~~l~~-L~~L~l~~N~i 193 (197)
T 4ezg_A 167 QFDGVH-DYR-GIEDFPK-LNQLYAFSQTI 193 (197)
T ss_dssp TTBCCC-CCT-TGGGCSS-CCEEEECBC--
T ss_pred CCCCCc-ChH-HhccCCC-CCEEEeeCccc
Confidence 999999 566 6777776 99999999987
No 65
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.28 E-value=3.1e-12 Score=142.78 Aligned_cols=106 Identities=27% Similarity=0.310 Sum_probs=88.1
Q ss_pred eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
+..|+.|+|++|.+. .+|..+..+++|+.|+|++|.|+ .+|..+.. ++|+.|+|++|+|+ .+|..+++|++|+.|+
T Consensus 223 l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 223 DQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEE
T ss_pred CCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEE
Confidence 345778888888887 67777888888888888888888 88888877 88888888888888 7888888888888888
Q ss_pred eecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
|++|.|+ .+|..++.+.. |+.|+|++|+|+
T Consensus 300 L~~N~l~-~lp~~~~~l~~-L~~L~L~~N~l~ 329 (727)
T 4b8c_D 300 FFDNMVT-TLPWEFGNLCN-LQFLGVEGNPLE 329 (727)
T ss_dssp CCSSCCC-CCCSSTTSCTT-CCCEECTTSCCC
T ss_pred CCCCCCC-ccChhhhcCCC-ccEEeCCCCccC
Confidence 8888887 88888877765 888888888764
No 66
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.27 E-value=3e-12 Score=139.85 Aligned_cols=219 Identities=14% Similarity=0.063 Sum_probs=145.1
Q ss_pred eEEEEEECCeecccccccccCCCcceeeeeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCCh-hHHHHHHH
Q 009515 306 RVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVP-EQVIAMRA 384 (533)
Q Consensus 306 R~F~I~ing~~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p-~~~~~l~~ 384 (533)
..-.+.+.++.+.+... ........++.+++++|+++ .+|+.... +..++.+.+..+.+..++ ..+..+..
T Consensus 255 ~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~-~lp~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 255 SVESINLQKHYFFNISS-----NTFHCFSGLQELDLTATHLS-ELPSGLVG--LSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp EEEEEECTTCCCSSCCT-----TTTTTCTTCSEEECTTSCCS-CCCSSCCS--CTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred ceeEEEeecCccCccCH-----HHhccccCCCEEeccCCccC-CCChhhcc--cccCCEEECccCCcCcCchhhhhccCc
Confidence 44556666655443321 11111235667777777776 66666555 666777777777665543 34444444
Q ss_pred HHHhcCCCCCCC-CCCC----CCCC-----CCCCCCcceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEE
Q 009515 385 LKESLRVPDRMG-WNGD----PCAP-----TNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLN 454 (533)
Q Consensus 385 lk~~~~~~~~~~-w~gd----pc~~-----~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~ 454 (533)
|+......+... .... .|.. ...+...++.|.+.....++.|+.|++++|.+.+..|..+..+++|+.|+
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 433221111000 0000 0000 00123344444344445566799999999999998899999999999999
Q ss_pred ccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCccc---CchhHHhcccCCcEEEccC
Q 009515 455 LSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGR---VPEELYSIGVHGGAFEYVK 529 (533)
Q Consensus 455 Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~---lP~~l~~l~~~L~~L~ls~ 529 (533)
+++|.+++..|.. +.. ++|+.|++++|++++..|..++++++|+.|+|++|++++. .+..+..+.. |+.|++++
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~-L~~L~Ls~ 485 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR-LEILVLSF 485 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT-CCEEECTT
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC-ccEEECCC
Confidence 9999999877765 666 9999999999999988999999999999999999999862 2355777766 99999999
Q ss_pred CCCC
Q 009515 530 TPNC 533 (533)
Q Consensus 530 N~l~ 533 (533)
|++.
T Consensus 486 n~l~ 489 (606)
T 3t6q_A 486 CDLS 489 (606)
T ss_dssp SCCC
T ss_pred CccC
Confidence 9863
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.27 E-value=9.9e-12 Score=121.90 Aligned_cols=109 Identities=17% Similarity=0.124 Sum_probs=94.8
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L 502 (533)
..|+.|+|++|.+++..+..+..+++|+.|++++|++++..|..+.. ++|+.|+|++|++++..|..++.+++|+.|+|
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 45889999999999888888999999999999999999666666777 99999999999999777777899999999999
Q ss_pred ecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
++|++++..|..+..+.. |+.|++++|++.
T Consensus 165 ~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~ 194 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKLTQ-LKDLRLYQNQLK 194 (272)
T ss_dssp CSSCCCCCCTTTTTTCTT-CCEEECCSSCCS
T ss_pred CCCCcCccCHHHhcCCcc-CCEEECCCCcCC
Confidence 999999554444566665 999999999873
No 68
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.27 E-value=3e-12 Score=137.20 Aligned_cols=157 Identities=19% Similarity=0.298 Sum_probs=115.4
Q ss_pred eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChh---HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCC
Q 009515 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE---QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAW 410 (533)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~---~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w 410 (533)
..++.+++++|+++..++..... +..++.+.+..+.+..++. .+..+.+|+.. .... +..
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L-~Ls~--------------N~l 386 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGH--LTELETLILQMNQLKELSKIAEMTTQMKSLQQL-DISQ--------------NSV 386 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCC--CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE-ECCS--------------SCC
T ss_pred CcccEEEeECCccChhhhhhhcc--CCCCCEEEccCCccCccccchHHHhhCCCCCEE-ECCC--------------CcC
Confidence 46778899999888656666665 7788999999988876543 23333333221 1111 111
Q ss_pred cc-eeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCC
Q 009515 411 EG-ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488 (533)
Q Consensus 411 ~g-v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP 488 (533)
.+ +.. .....+..|+.|++++|.+++.+|..+. ++|+.|++++|+++ .+|..+.. ++|+.|+|++|+++ .+|
T Consensus 387 ~~~l~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~ 460 (520)
T 2z7x_B 387 SYDEKK--GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP 460 (520)
T ss_dssp BCCGGG--CSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCC
T ss_pred Cccccc--chhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccC
Confidence 11 110 0011234588999999999988887765 79999999999999 99998888 99999999999999 688
Q ss_pred cc-CCCCcCCCEEEeecccCcccCch
Q 009515 489 DS-LTSSSKLQLVLLNNNLLEGRVPE 513 (533)
Q Consensus 489 ~~-~~~l~~L~~L~L~~N~l~g~lP~ 513 (533)
.. +..+++|+.|+|++|++++..+.
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred HHHhccCCcccEEECcCCCCcccCCc
Confidence 76 89999999999999999976653
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.26 E-value=3.9e-12 Score=134.16 Aligned_cols=178 Identities=20% Similarity=0.236 Sum_probs=130.0
Q ss_pred eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcc
Q 009515 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (533)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~-~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~g 412 (533)
..++.+++++|+++...+..+.. +..++.+++..|.+..+|.+ +..+.+|+... +.. +....
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-L~~--------------N~l~~ 161 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVGAFNG--LASLNTLELFDNWLTVIPSGAFEYLSKLRELW-LRN--------------NPIES 161 (452)
T ss_dssp TTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE-CCS--------------CCCCE
T ss_pred CCCCEEECCCCccCCcChhhccC--cccCCEEECCCCcCCccChhhhcccCCCCEEE-CCC--------------CCcce
Confidence 35778888888888544455555 77888888888887777765 22233333321 111 11111
Q ss_pred eeecCCCCCceeEEEEEEeCCCCCccccc-hhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCcc
Q 009515 413 ITCHPNKDETAVVISQIDLGSQGLKGYIS-DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS 490 (533)
Q Consensus 413 v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p-~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~ 490 (533)
+. ......++.|+.|+|++|...+.++ ..+.++++|+.|+|++|+++ .+| .+.. ++|+.|+|++|++++..|..
T Consensus 162 ~~--~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~ 237 (452)
T 3zyi_A 162 IP--SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGS 237 (452)
T ss_dssp EC--TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGG
T ss_pred eC--HhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCccc
Confidence 11 1112334568899999854444444 46899999999999999998 556 4666 99999999999999988999
Q ss_pred CCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 491 LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 491 ~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
+.++++|+.|+|++|++++..|..+..+.. |+.|+|++|+|.
T Consensus 238 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~ 279 (452)
T 3zyi_A 238 FHGLSSLKKLWVMNSQVSLIERNAFDGLAS-LVELNLAHNNLS 279 (452)
T ss_dssp GTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEECCSSCCS
T ss_pred ccCccCCCEEEeCCCcCceECHHHhcCCCC-CCEEECCCCcCC
Confidence 999999999999999999777777877776 999999999873
No 70
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.26 E-value=5.7e-12 Score=137.75 Aligned_cols=106 Identities=15% Similarity=0.096 Sum_probs=78.1
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
.++.|+|++|+|++..+..|.++++|++|+|++|++++..|..+.. ++|++|+|++|++++..|..|.+|++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 5788888888888776777888888888888888888544555666 888888888888875555567777778888887
Q ss_pred cccCcccCch-hHHhcccCCcEEEccCCCC
Q 009515 504 NNLLEGRVPE-ELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 504 ~N~l~g~lP~-~l~~l~~~L~~L~ls~N~l 532 (533)
+|+++ .+|. .++.+.. |+.|++++|++
T Consensus 133 ~N~l~-~l~~~~~~~L~~-L~~L~Ls~N~l 160 (635)
T 4g8a_A 133 ETNLA-SLENFPIGHLKT-LKELNVAHNLI 160 (635)
T ss_dssp TSCCC-CSTTCCCTTCTT-CCEEECCSSCC
T ss_pred CCcCC-CCChhhhhcCcc-cCeeccccCcc
Confidence 77777 3443 3555554 77777777765
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.25 E-value=8.7e-12 Score=122.35 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=85.1
Q ss_pred eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
++.|+.|+|++|.+++..+..+..+++|+.|++++|.+++..|..+.. ++|+.|++++|++.+..+..++.+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 130 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEE
Confidence 445777888888877666667778888888888888887666666777 8888888888888866665788888888888
Q ss_pred eecccCcc-cCchhHHhcccCCcEEEccCCCC
Q 009515 502 LNNNLLEG-RVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 502 L~~N~l~g-~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
|++|++++ .+|..+..+.. |+.|++++|++
T Consensus 131 l~~n~l~~~~l~~~~~~l~~-L~~L~Ls~N~l 161 (276)
T 2z62_A 131 VAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKI 161 (276)
T ss_dssp CCSSCCCCCCCCGGGGGCTT-CCEEECCSSCC
T ss_pred CcCCccceecCchhhccCCC-CCEEECCCCCC
Confidence 88888874 36888888766 89999998876
No 72
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.25 E-value=9.9e-12 Score=127.16 Aligned_cols=83 Identities=29% Similarity=0.251 Sum_probs=40.2
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccC----CCCcCCCE
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL----TSSSKLQL 499 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~----~~l~~L~~ 499 (533)
.|+.|+|++|.|++..+..|..+++|+.|+|++|++++..|..+.. ++|+.|+|++|+++ .+|..+ ..+++|+.
T Consensus 89 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~ 167 (361)
T 2xot_A 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLML 167 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCE
T ss_pred CCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCE
Confidence 3455555555555444444555555555555555555444444444 55555555555555 233322 33455555
Q ss_pred EEeecccCc
Q 009515 500 VLLNNNLLE 508 (533)
Q Consensus 500 L~L~~N~l~ 508 (533)
|+|++|+++
T Consensus 168 L~L~~N~l~ 176 (361)
T 2xot_A 168 LDLSSNKLK 176 (361)
T ss_dssp EECCSSCCC
T ss_pred EECCCCCCC
Confidence 555555555
No 73
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=8.6e-12 Score=135.21 Aligned_cols=180 Identities=20% Similarity=0.184 Sum_probs=119.4
Q ss_pred eeEeecCCceEEEEecccchhhhhhccccccccCC--------------CCCCChhHHHHHHHHHHhcCCCCCCCCCCCC
Q 009515 336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPN--------------DLSTVPEQVIAMRALKESLRVPDRMGWNGDP 401 (533)
Q Consensus 336 l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~--------------~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdp 401 (533)
+..+++++|+|. .+|..++. +..++.+.+..+ ..+..|..+..+.+|+..-..... .+. +
T Consensus 351 L~~L~Ls~n~L~-~Lp~~i~~--l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~-~- 424 (567)
T 1dce_A 351 LFRCELSVEKST-VLQSELES--CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD-D- 424 (567)
T ss_dssp SSSCCCCHHHHH-HHHHHHHH--HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH-H-
T ss_pred ceeccCChhhHH-hhHHHHHH--HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc-h-
Confidence 445667777776 67777666 666666555333 123455566667676654211000 000 0
Q ss_pred CCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccC
Q 009515 402 CAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSD 480 (533)
Q Consensus 402 c~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~ 480 (533)
.+..+..-..+...+ ...|+.|+|++|.|++ +|. ++.+++|+.|+|++|.++ .+|..++. ++|+.|+|++
T Consensus 425 -L~~l~l~~n~i~~l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 425 -LRSKFLLENSVLKME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495 (567)
T ss_dssp -HHHHHHHHHHHHHHH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred -hhhhhhhcccccccC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence 000000000011000 0126778999999986 565 889999999999999998 88888888 9999999999
Q ss_pred CccccCCCccCCCCcCCCEEEeecccCcccC-chhHHhcccCCcEEEccCCCCC
Q 009515 481 NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRV-PEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 481 N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~l-P~~l~~l~~~L~~L~ls~N~l~ 533 (533)
|++++ +| .+++|++|+.|+|++|++++.. |..++.+.. |+.|+|++|+|+
T Consensus 496 N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~-L~~L~L~~N~l~ 546 (567)
T 1dce_A 496 NALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR-LVLLNLQGNSLC 546 (567)
T ss_dssp SCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT-CCEEECTTSGGG
T ss_pred CCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC-CCEEEecCCcCC
Confidence 99995 77 7888999999999999998655 888888776 899999999763
No 74
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.25 E-value=1.5e-11 Score=130.47 Aligned_cols=122 Identities=17% Similarity=0.167 Sum_probs=76.8
Q ss_pred CcceeecCCCCC-----ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCcc
Q 009515 410 WEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF 483 (533)
Q Consensus 410 w~gv~c~~~~~~-----~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l 483 (533)
|..+.|...... ....++.|+|++|.+++..+..|.++++|+.|+|++|.+++..|..+.. ++|+.|+|++|++
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 456777654322 1234667777777777666667777777777777777777555666666 6777777777776
Q ss_pred ccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 484 TGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 484 ~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
++..+..+.++++|+.|+|++|++++..|..+..+.. |+.|++++|++
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~n~l 140 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN-LKSLEVGDNDL 140 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT-CCEEEECCTTC
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHcccccc-CCEEECCCCcc
Confidence 6433344566666666666666666555555555544 66666666654
No 75
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=2.5e-11 Score=110.95 Aligned_cols=113 Identities=19% Similarity=0.277 Sum_probs=91.2
Q ss_pred CCCCCCCCCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCc
Q 009515 401 PCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSL 473 (533)
Q Consensus 401 pc~~~~~~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L 473 (533)
.|...+.|....+.|....... ...|+.|+|++|++++..|..|..+++|+.|+|++|++++ +|.. +.. ++|
T Consensus 5 ~CP~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L 83 (174)
T 2r9u_A 5 GCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQL 83 (174)
T ss_dssp SSCTTSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred CCCCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchh
Confidence 4554445666777887654322 2458899999999999889999999999999999999995 5554 567 999
Q ss_pred cEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhH
Q 009515 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL 515 (533)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l 515 (533)
+.|+|++|++++..+..+..+++|+.|+|++|.+. ..+..+
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~-c~~~~~ 124 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD-CECRDI 124 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC-TTBGGG
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCcc-cccccH
Confidence 99999999999655556999999999999999998 555433
No 76
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.24 E-value=9.3e-12 Score=137.92 Aligned_cols=108 Identities=19% Similarity=0.174 Sum_probs=67.3
Q ss_pred eeEEEEEEeCCCCCccccc--------hhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCC
Q 009515 423 AVVISQIDLGSQGLKGYIS--------DKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p--------~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~ 492 (533)
+..|+.|+|++|.+++..+ ..+..+++|+.|+|++|+++ .+|.. +.. ++|+.|+|++|++++..+..+.
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 581 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFN 581 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhC
Confidence 3446666666666664311 12566667777777777776 55543 455 7777777777777744444456
Q ss_pred CCcCCCEEEeecccCcccCchhHH-hcccCCcEEEccCCCC
Q 009515 493 SSSKLQLVLLNNNLLEGRVPEELY-SIGVHGGAFEYVKTPN 532 (533)
Q Consensus 493 ~l~~L~~L~L~~N~l~g~lP~~l~-~l~~~L~~L~ls~N~l 532 (533)
++++|+.|+|++|++++..|..+. .+.. |+.|++++|++
T Consensus 582 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~-L~~l~l~~N~~ 621 (680)
T 1ziw_A 582 NQVSLKSLNLQKNLITSVEKKVFGPAFRN-LTELDMRFNPF 621 (680)
T ss_dssp TCTTCCEEECTTSCCCBCCHHHHHHHHTT-CSEEECTTCCC
T ss_pred CCCCCCEEECCCCcCCccChhHhcccccc-cCEEEccCCCc
Confidence 777777777777777744444344 3443 77777777765
No 77
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.22 E-value=3.9e-11 Score=120.84 Aligned_cols=129 Identities=19% Similarity=0.202 Sum_probs=95.6
Q ss_pred CCCCCCCCCCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCc
Q 009515 400 DPCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL 473 (533)
Q Consensus 400 dpc~~~~~~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L 473 (533)
..|...+.|.|..+.|....... .+.++.|+|++|.+++..+..+.++++|++|++++|++++..|..+.. ++|
T Consensus 23 ~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp CCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 34554445789999997544321 235788999999999877778999999999999999999777888888 999
Q ss_pred cEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+.|+|++|+++ .+|..+. ++|+.|++++|++++..+..+..+.. |+.|++++|++
T Consensus 103 ~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l 157 (330)
T 1xku_A 103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQ-MIVVELGTNPL 157 (330)
T ss_dssp CEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTT-CCEEECCSSCC
T ss_pred CEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCcc-ccEEECCCCcC
Confidence 99999999988 6776554 56777777777777433334444443 66666666654
No 78
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.22 E-value=1.2e-12 Score=133.48 Aligned_cols=177 Identities=14% Similarity=0.131 Sum_probs=121.9
Q ss_pred eeeEeecCCceEEEEecc-cchhhhhhccccccccCCCCCCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcc
Q 009515 335 HYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~-~~~~~iLn~lEi~~l~~~~~~~~p~~-~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~g 412 (533)
.++.+++++|+++. +++ .... +..++.+.+..+.+..++.+ +..+.+|+... ... +...+
T Consensus 53 ~L~~L~l~~n~i~~-~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-Ls~--------------n~l~~ 114 (353)
T 2z80_A 53 AVKSLDLSNNRITY-ISNSDLQR--CVNLQALVLTSNGINTIEEDSFSSLGSLEHLD-LSY--------------NYLSN 114 (353)
T ss_dssp TCCEEECTTSCCCE-ECTTTTTT--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEE-CCS--------------SCCSS
T ss_pred cCcEEECCCCcCcc-cCHHHhcc--CCCCCEEECCCCccCccCHhhcCCCCCCCEEE-CCC--------------CcCCc
Confidence 57788999999884 444 5555 77888899988887766543 33333333221 111 11111
Q ss_pred eeecCCCCCceeEEEEEEeCCCCCccccc-hhhhccCCCCEEEccCCC-CCCCCCCccCC-CCccEEEccCCccccCCCc
Q 009515 413 ITCHPNKDETAVVISQIDLGSQGLKGYIS-DKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD 489 (533)
Q Consensus 413 v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p-~~l~~L~~L~~L~Ls~N~-l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~ 489 (533)
+... ....+..|+.|+|++|.+++..+ ..+..+++|+.|++++|+ +++..|..+.. ++|+.|++++|++++..|.
T Consensus 115 ~~~~--~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 115 LSSS--WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp CCHH--HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CCHh--HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHH
Confidence 1110 01123458889999998885433 378888999999999884 65444566777 8899999999999888888
Q ss_pred cCCCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 490 SLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 490 ~~~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
.+..+++|++|++++|+++ .+|..+.....+|+.|++++|++
T Consensus 193 ~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l 234 (353)
T 2z80_A 193 SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDL 234 (353)
T ss_dssp TTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBC
T ss_pred HHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcc
Confidence 8889999999999999887 77776655444588999998876
No 79
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.22 E-value=8.6e-12 Score=134.46 Aligned_cols=106 Identities=18% Similarity=0.140 Sum_probs=74.6
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
.|+.|+|++|.+++..|..+..+++|++|++++|++++..|..+.. ++|++|+|++|++++..|..++++++|++|+|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 106 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLM 106 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECT
T ss_pred CccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECC
Confidence 5777777777777776777777777777777777777666666666 777777777777776555557777777777777
Q ss_pred cccCcc-cCchhHHhcccCCcEEEccCCC
Q 009515 504 NNLLEG-RVPEELYSIGVHGGAFEYVKTP 531 (533)
Q Consensus 504 ~N~l~g-~lP~~l~~l~~~L~~L~ls~N~ 531 (533)
+|++++ .+|..+..+.. |+.|++++|+
T Consensus 107 ~n~l~~~~~~~~~~~l~~-L~~L~L~~n~ 134 (549)
T 2z81_A 107 GNPYQTLGVTSLFPNLTN-LQTLRIGNVE 134 (549)
T ss_dssp TCCCSSSCSSCSCTTCTT-CCEEEEEESS
T ss_pred CCcccccchhhhhhccCC-ccEEECCCCc
Confidence 777764 34555655554 6777777665
No 80
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.21 E-value=4.8e-12 Score=125.60 Aligned_cols=99 Identities=23% Similarity=0.341 Sum_probs=65.9
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
.|+.|+|++|++++. +.+..+++|+.|++++|++++. +.+.. ++|+.|+|++|++++..| +..+++|+.|+|+
T Consensus 113 ~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186 (291)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECC
Confidence 366677777777653 4567777777777777777643 44555 777777777777774333 6777777777777
Q ss_pred cccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 504 NNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+|+++ .+|. +..+.. |+.|++++|++
T Consensus 187 ~N~i~-~l~~-l~~l~~-L~~L~l~~n~i 212 (291)
T 1h6t_A 187 KNHIS-DLRA-LAGLKN-LDVLELFSQEC 212 (291)
T ss_dssp SSCCC-BCGG-GTTCTT-CSEEEEEEEEE
T ss_pred CCcCC-CChh-hccCCC-CCEEECcCCcc
Confidence 77777 4553 555554 77777777653
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.21 E-value=9.1e-12 Score=124.58 Aligned_cols=167 Identities=19% Similarity=0.229 Sum_probs=119.9
Q ss_pred eeeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcc
Q 009515 333 SWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (533)
Q Consensus 333 ~~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~g 412 (533)
...++.+++++|+++ .+++ ... +..++.+.+..+.+..++ .+..+..|+... ... +...+
T Consensus 62 l~~L~~L~L~~n~i~-~~~~-~~~--l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~-l~~--------------n~l~~ 121 (308)
T 1h6u_A 62 LNNLIGLELKDNQIT-DLAP-LKN--LTKITELELSGNPLKNVS-AIAGLQSIKTLD-LTS--------------TQITD 121 (308)
T ss_dssp CTTCCEEECCSSCCC-CCGG-GTT--CCSCCEEECCSCCCSCCG-GGTTCTTCCEEE-CTT--------------SCCCC
T ss_pred cCCCCEEEccCCcCC-CChh-Hcc--CCCCCEEEccCCcCCCch-hhcCCCCCCEEE-CCC--------------CCCCC
Confidence 346788899999887 4555 544 778888999988887765 233333332211 110 11222
Q ss_pred eeecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccC
Q 009515 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL 491 (533)
Q Consensus 413 v~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~ 491 (533)
+.. ...++.|+.|++++|.+++..+ +..+++|+.|++++|.+++ ++. +.. ++|+.|+|++|++++ +|. +
T Consensus 122 ~~~----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l 191 (308)
T 1h6u_A 122 VTP----LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISD-ISP-L 191 (308)
T ss_dssp CGG----GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CGG-G
T ss_pred chh----hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCc-Chh-h
Confidence 211 2234568899999999986543 8899999999999999984 554 777 999999999999995 443 7
Q ss_pred CCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 492 ~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
..+++|+.|+|++|+++ .+++ +..+.. |+.|++++|++
T Consensus 192 ~~l~~L~~L~L~~N~l~-~~~~-l~~l~~-L~~L~l~~N~i 229 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQIS-DVSP-LANTSN-LFIVTLTNQTI 229 (308)
T ss_dssp GGCTTCCEEECTTSCCC-BCGG-GTTCTT-CCEEEEEEEEE
T ss_pred cCCCCCCEEEccCCccC-cccc-ccCCCC-CCEEEccCCee
Confidence 88999999999999999 4553 677665 99999999875
No 82
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.21 E-value=3.5e-12 Score=127.57 Aligned_cols=150 Identities=17% Similarity=0.299 Sum_probs=97.9
Q ss_pred eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (533)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv 413 (533)
..++.+++++|+++ .++ .... +..++.+.+..+.+..++. +..+.+|+... .. . +...++
T Consensus 85 ~~L~~L~L~~n~l~-~~~-~~~~--l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~-l~----~----------n~l~~~ 144 (308)
T 1h6u_A 85 TKITELELSGNPLK-NVS-AIAG--LQSIKTLDLTSTQITDVTP-LAGLSNLQVLY-LD----L----------NQITNI 144 (308)
T ss_dssp CSCCEEECCSCCCS-CCG-GGTT--CTTCCEEECTTSCCCCCGG-GTTCTTCCEEE-CC----S----------SCCCCC
T ss_pred CCCCEEEccCCcCC-Cch-hhcC--CCCCCEEECCCCCCCCchh-hcCCCCCCEEE-CC----C----------CccCcC
Confidence 35777888888776 232 3333 6778888888888777654 33333332211 11 0 111111
Q ss_pred eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCC
Q 009515 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (533)
Q Consensus 414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~ 492 (533)
.. ...+..|+.|+|++|.+++. +. +..+++|+.|++++|++++ ++. +.. ++|+.|+|++|++++. + .+.
T Consensus 145 ~~----l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~~-~-~l~ 214 (308)
T 1h6u_A 145 SP----LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISDV-S-PLA 214 (308)
T ss_dssp GG----GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCBC-G-GGT
T ss_pred cc----ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCcc-c-ccc
Confidence 11 22334588888999888854 33 8888889999999998884 443 566 8899999999988854 4 378
Q ss_pred CCcCCCEEEeecccCcccCchh
Q 009515 493 SSSKLQLVLLNNNLLEGRVPEE 514 (533)
Q Consensus 493 ~l~~L~~L~L~~N~l~g~lP~~ 514 (533)
.+++|+.|+|++|+++ ..|..
T Consensus 215 ~l~~L~~L~l~~N~i~-~~~~~ 235 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTIT-NQPVF 235 (308)
T ss_dssp TCTTCCEEEEEEEEEE-CCCEE
T ss_pred CCCCCCEEEccCCeee-cCCee
Confidence 8888999999999887 44543
No 83
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.21 E-value=1.3e-11 Score=111.67 Aligned_cols=105 Identities=21% Similarity=0.234 Sum_probs=92.9
Q ss_pred eEEEEEEeCCCCCc-cccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 424 VVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
..|+.|+|++|.++ +.+|..+..+++|+.|++++|.+++. ..+.. ++|+.|+|++|++++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34888999999998 88899899999999999999999854 67777 9999999999999987888888899999999
Q ss_pred eecccCcccCc--hhHHhcccCCcEEEccCCCC
Q 009515 502 LNNNLLEGRVP--EELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 502 L~~N~l~g~lP--~~l~~l~~~L~~L~ls~N~l 532 (533)
|++|+++ .+| ..+..+.. |+.|++++|++
T Consensus 102 Ls~N~l~-~~~~~~~l~~l~~-L~~L~l~~N~l 132 (168)
T 2ell_A 102 LSGNKLK-DISTLEPLKKLEC-LKSLDLFNCEV 132 (168)
T ss_dssp CBSSSCC-SSGGGGGGSSCSC-CCEEECCSSGG
T ss_pred ccCCccC-cchhHHHHhcCCC-CCEEEeeCCcC
Confidence 9999999 555 67777766 99999999986
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.21 E-value=5.5e-12 Score=126.16 Aligned_cols=105 Identities=23% Similarity=0.270 Sum_probs=85.4
Q ss_pred ceeEEEEEEeCCCCCccccch----hhhccCCCCEEEccCCCCCCCCCCccCC----CCccEEEccCCccccCCCccCCC
Q 009515 422 TAVVISQIDLGSQGLKGYISD----KISLLSNLVNLNLSTNSLGGTLPSGLGQ----QSLVRLDLSDNQFTGSIPDSLTS 493 (533)
Q Consensus 422 ~~~~L~~L~Ls~n~l~g~~p~----~l~~L~~L~~L~Ls~N~l~g~iP~~l~~----~~L~~L~Ls~N~l~g~iP~~~~~ 493 (533)
.++.|+.|+|++|+++. ++. .+..+++|++|+|++|++++.+|..+.. ++|+.|+|++|+++ .+|..+.
T Consensus 195 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~- 271 (310)
T 4glp_A 195 KFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP- 271 (310)
T ss_dssp SSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-
T ss_pred cCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-
Confidence 34568889999999972 333 2578899999999999999887877766 48999999999999 8888775
Q ss_pred CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
++|+.|+|++|+++ .+|. +..+.. |+.|++++|+|.
T Consensus 272 -~~L~~L~Ls~N~l~-~~~~-~~~l~~-L~~L~L~~N~l~ 307 (310)
T 4glp_A 272 -AKLRVLDLSSNRLN-RAPQ-PDELPE-VDNLTLDGNPFL 307 (310)
T ss_dssp -SCCSCEECCSCCCC-SCCC-TTSCCC-CSCEECSSTTTS
T ss_pred -CCCCEEECCCCcCC-CCch-hhhCCC-ccEEECcCCCCC
Confidence 79999999999999 4454 455555 999999999874
No 85
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.21 E-value=3.2e-11 Score=121.62 Aligned_cols=128 Identities=19% Similarity=0.252 Sum_probs=102.4
Q ss_pred CCCCCCCCCCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCc
Q 009515 400 DPCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL 473 (533)
Q Consensus 400 dpc~~~~~~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L 473 (533)
..|...+.|.|..+.|....... ...++.|+|++|.+.+..+..+.++++|+.|++++|++++..|..+.. ++|
T Consensus 25 ~~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 25 AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp CCCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred CCCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 34544444789999997554322 235889999999999887889999999999999999999777888888 999
Q ss_pred cEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchh-HHhcccCCcEEEccCCCC
Q 009515 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~-l~~l~~~L~~L~ls~N~l 532 (533)
+.|+|++|+++ .+|..+. ++|++|++++|+++ .+|.. +..+.. |+.|++++|++
T Consensus 105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~-L~~L~l~~n~l 159 (332)
T 2ft3_A 105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRN-MNCIEMGGNPL 159 (332)
T ss_dssp CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSS-CCEEECCSCCC
T ss_pred CEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCcc-CCEEECCCCcc
Confidence 99999999998 7887665 78999999999998 55544 556555 89999998876
No 86
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.21 E-value=6e-12 Score=126.33 Aligned_cols=99 Identities=16% Similarity=0.191 Sum_probs=56.0
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
.|+.|+|++|.+++. + ....+++|+.|++++|+++ .+|..+.. ++|+.|+|++|+++ .+|..+..+++|+.|+|+
T Consensus 170 ~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 170 TLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp TCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred cCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence 355666666666543 2 2223566666666666665 34444555 66666666666666 455556666666666666
Q ss_pred cccCc-ccCchhHHhcccCCcEEEcc
Q 009515 504 NNLLE-GRVPEELYSIGVHGGAFEYV 528 (533)
Q Consensus 504 ~N~l~-g~lP~~l~~l~~~L~~L~ls 528 (533)
+|++. +.+|..+..+.. |+.|+++
T Consensus 246 ~N~~~~~~~~~~~~~~~~-L~~l~l~ 270 (317)
T 3o53_A 246 GNGFHCGTLRDFFSKNQR-VQTVAKQ 270 (317)
T ss_dssp TCCCBHHHHHHHHHTCHH-HHHHHHH
T ss_pred CCCccCcCHHHHHhcccc-ceEEECC
Confidence 66665 555555555443 5555444
No 87
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=4.8e-12 Score=137.23 Aligned_cols=105 Identities=23% Similarity=0.257 Sum_probs=89.1
Q ss_pred CCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCC-CccCCCCcCC
Q 009515 420 DETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSI-PDSLTSSSKL 497 (533)
Q Consensus 420 ~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~i-P~~~~~l~~L 497 (533)
...+..|+.|+|++|.|+ .+|..++.|++|+.|+|++|++++ +| .++. ++|+.|+|++|++++.. |..++.|++|
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence 344556999999999999 889999999999999999999995 77 7888 99999999999999876 9999999999
Q ss_pred CEEEeecccCcccCchh--HHhcccCCcEEEc
Q 009515 498 QLVLLNNNLLEGRVPEE--LYSIGVHGGAFEY 527 (533)
Q Consensus 498 ~~L~L~~N~l~g~lP~~--l~~l~~~L~~L~l 527 (533)
+.|+|++|++++..|.. +.....+|+.|++
T Consensus 536 ~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999654422 2232334898875
No 88
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=3.9e-11 Score=111.38 Aligned_cols=103 Identities=26% Similarity=0.401 Sum_probs=89.2
Q ss_pred EEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (533)
Q Consensus 427 ~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~ 504 (533)
+.+++++|+++ .+|..+.. +|+.|++++|++++..+.. +.. ++|+.|+|++|++++..|..+.++++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56899999996 67776654 8999999999999655543 667 9999999999999998899999999999999999
Q ss_pred ccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 505 NLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 505 N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
|++++..|..+..+.. |+.|+|++|+|.
T Consensus 88 N~l~~~~~~~~~~l~~-L~~L~L~~N~l~ 115 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQ-LKTLNLYDNQIS 115 (192)
T ss_dssp CCCCEECSSSSTTCTT-CCEEECCSSCCC
T ss_pred CcCCccCHHHhcCCCC-CCEEECCCCcCC
Confidence 9999766666777766 999999999874
No 89
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.20 E-value=1.4e-11 Score=132.79 Aligned_cols=108 Identities=15% Similarity=0.093 Sum_probs=86.7
Q ss_pred EEEEEEeCCCCCcc-ccchhhhccCCCCEEEccCCCCCCCCCC-ccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 425 VISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g-~~p~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
.|+.|+|++|.+++ .+|..++++++|+.|++++|.+.+.+|. .+.. ++|+.|++++|++++.+|..++.+++|+.|+
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 47788888888886 3567788888899999998886567764 5666 8889999999998888888888888899999
Q ss_pred eecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
++.|.+. .+|..+.....+|+.|++++|++.
T Consensus 179 l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 179 LHLSESA-FLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp EECSBST-THHHHHHHSTTTBSEEEEESCBCT
T ss_pred cccCccc-ccchhhHhhcccccEEEccCCccc
Confidence 9888887 677776554445999999999763
No 90
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.20 E-value=9.2e-12 Score=134.68 Aligned_cols=94 Identities=24% Similarity=0.352 Sum_probs=47.5
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCC-------C
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKL-------Q 498 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L-------~ 498 (533)
|+.|+|++|.+++ +|. .+++|+.|+|++|++++ +|. +. ++|+.|+|++|+++ .+|. +.. +| +
T Consensus 142 L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~ 210 (571)
T 3cvr_A 142 LEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEI 210 (571)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSSCCS-SCCC-CC----------CCE
T ss_pred ccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh-CCCCEEECcCCCCC-chhh-HHH--hhhcccccce
Confidence 4555555555554 333 34555555555555553 444 33 55555555555555 4554 332 44 5
Q ss_pred EEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 499 LVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 499 ~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
.|+|++|+++ .+|..++.+.. |+.|+|++|+|
T Consensus 211 ~L~Ls~N~l~-~lp~~l~~l~~-L~~L~L~~N~l 242 (571)
T 3cvr_A 211 FFRCRENRIT-HIPENILSLDP-TCTIILEDNPL 242 (571)
T ss_dssp EEECCSSCCC-CCCGGGGGSCT-TEEEECCSSSC
T ss_pred EEecCCCcce-ecCHHHhcCCC-CCEEEeeCCcC
Confidence 5555555555 45555555433 55555555554
No 91
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.19 E-value=2.9e-11 Score=132.07 Aligned_cols=107 Identities=15% Similarity=0.171 Sum_probs=62.5
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
.|+.|+|++|+|++..+..|.+|++|++|+|++|++++..+..+.. ++|++|+|++|++++..+..+++|++|++|+|+
T Consensus 77 ~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls 156 (635)
T 4g8a_A 77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 156 (635)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccc
Confidence 3556666666666555555666666666666666666333333455 666666666666664444456666666666666
Q ss_pred cccCcc-cCchhHHhcccCCcEEEccCCCC
Q 009515 504 NNLLEG-RVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 504 ~N~l~g-~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+|++++ .+|..+..+.. |++|++++|+|
T Consensus 157 ~N~l~~~~~~~~~~~l~~-L~~L~L~~N~l 185 (635)
T 4g8a_A 157 HNLIQSFKLPEYFSNLTN-LEHLDLSSNKI 185 (635)
T ss_dssp SSCCCCCCCCGGGGGCTT-CCEEECCSSCC
T ss_pred cCccccCCCchhhccchh-hhhhcccCccc
Confidence 666643 34555555544 66666666654
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.19 E-value=9e-12 Score=132.76 Aligned_cols=168 Identities=18% Similarity=0.112 Sum_probs=128.3
Q ss_pred eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (533)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv 413 (533)
..+..+++++|.+++..+ ... +..++.++++.|.+..+|.. ..|+. +.... +.+.++
T Consensus 58 ~~L~~L~Ls~N~l~~~~~--l~~--l~~L~~L~Ls~N~l~~l~~~----~~L~~-L~L~~--------------N~l~~~ 114 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLD--LES--LSTLRTLDLNNNYVQELLVG----PSIET-LHAAN--------------NNISRV 114 (487)
T ss_dssp TTCCEEECTTSCCEEEEE--CTT--CTTCCEEECCSSEEEEEEEC----TTCCE-EECCS--------------SCCCCE
T ss_pred CCCCEEEeeCCCCCCCcc--ccc--CCCCCEEEecCCcCCCCCCC----CCcCE-EECcC--------------CcCCCC
Confidence 357788888888886554 444 67788888888877666543 11211 11110 345556
Q ss_pred eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccC-C-CCccEEEccCCccccCCCccC
Q 009515 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSL 491 (533)
Q Consensus 414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~-~-~~L~~L~Ls~N~l~g~iP~~~ 491 (533)
.|.. ++.|+.|+|++|.+++..|..++.+++|+.|+|++|.+++.+|..+. . ++|+.|+|++|.+++. |. +
T Consensus 115 ~~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~ 187 (487)
T 3oja_A 115 SCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-Q 187 (487)
T ss_dssp EECC-----CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-C
T ss_pred Cccc-----cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-c
Confidence 5542 24589999999999998898999999999999999999988888887 4 9999999999999965 33 4
Q ss_pred CCCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 492 ~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
..+++|+.|+|++|+++ .+|+.+..+.. |+.|+|++|+|+
T Consensus 188 ~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~-L~~L~Ls~N~l~ 227 (487)
T 3oja_A 188 VVFAKLKTLDLSSNKLA-FMGPEFQSAAG-VTWISLRNNKLV 227 (487)
T ss_dssp CCCTTCCEEECCSSCCC-EECGGGGGGTT-CSEEECTTSCCC
T ss_pred ccCCCCCEEECCCCCCC-CCCHhHcCCCC-ccEEEecCCcCc
Confidence 46899999999999999 46667888766 999999999874
No 93
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.18 E-value=1.4e-11 Score=109.25 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=94.3
Q ss_pred eEEEEEEeCCCCCc-cccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 424 VVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
..++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+.. ++|+.|+|++|++++.+|..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34888999999998 88999999999999999999999955 67777 9999999999999988998888899999999
Q ss_pred eecccCccc-CchhHHhcccCCcEEEccCCCC
Q 009515 502 LNNNLLEGR-VPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 502 L~~N~l~g~-lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+++|++++. .|..+..+.. |+.|++++|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~-L~~L~l~~N~l 125 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLEN-LKSLDLFNCEV 125 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTT-CCEEECTTCGG
T ss_pred CCCCcCCChHHHHHHhhCCC-CCEEeCcCCcc
Confidence 999999952 3477888776 99999999986
No 94
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.17 E-value=8.1e-11 Score=109.38 Aligned_cols=102 Identities=20% Similarity=0.291 Sum_probs=89.2
Q ss_pred EEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecc
Q 009515 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505 (533)
Q Consensus 427 ~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N 505 (533)
+.+++++|+++ .+|..+. ++|+.|++++|+++ .+|..+.. ++|+.|+|++|++++..|..|.++++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46899999998 6776553 68999999999998 89988888 99999999999999877788999999999999999
Q ss_pred cCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 506 LLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 506 ~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
++++..|..+..+.. |+.|+|++|+|.
T Consensus 89 ~l~~i~~~~f~~l~~-L~~L~L~~N~l~ 115 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKS-LRLLSLHGNDIS 115 (193)
T ss_dssp CCCBCCTTTTTTCTT-CCEEECCSSCCC
T ss_pred ccCEeCHHHhCCCCC-CCEEECCCCCCC
Confidence 999655556777766 999999999873
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.17 E-value=1.4e-11 Score=118.15 Aligned_cols=105 Identities=19% Similarity=0.232 Sum_probs=83.6
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCC---EEEccCC-CCCCCCCCccCC-CCcc-EEEccCCccccCCCccCCCCcCC
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLV---NLNLSTN-SLGGTLPSGLGQ-QSLV-RLDLSDNQFTGSIPDSLTSSSKL 497 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~---~L~Ls~N-~l~g~iP~~l~~-~~L~-~L~Ls~N~l~g~iP~~~~~l~~L 497 (533)
+.|+.|++++|.+++ +|. +..+++|+ .|++++| ++++..+..+.. ++|+ .|++++|+++ .+|......++|
T Consensus 105 ~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L 181 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL 181 (239)
T ss_dssp TTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEE
T ss_pred CCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCC
Confidence 348889999999986 665 88888888 9999999 888444445777 9999 9999999999 777765555899
Q ss_pred CEEEeeccc-CcccCchh-HHhc-ccCCcEEEccCCCCC
Q 009515 498 QLVLLNNNL-LEGRVPEE-LYSI-GVHGGAFEYVKTPNC 533 (533)
Q Consensus 498 ~~L~L~~N~-l~g~lP~~-l~~l-~~~L~~L~ls~N~l~ 533 (533)
+.|+|++|+ ++ .+|.. +..+ .. |+.|++++|++.
T Consensus 182 ~~L~L~~n~~l~-~i~~~~~~~l~~~-L~~L~l~~N~l~ 218 (239)
T 2xwt_C 182 DAVYLNKNKYLT-VIDKDAFGGVYSG-PSLLDVSQTSVT 218 (239)
T ss_dssp EEEECTTCTTCC-EECTTTTTTCSBC-CSEEECTTCCCC
T ss_pred CEEEcCCCCCcc-cCCHHHhhccccC-CcEEECCCCccc
Confidence 999999995 88 56554 5555 44 999999999863
No 96
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=2.7e-12 Score=143.34 Aligned_cols=91 Identities=30% Similarity=0.369 Sum_probs=78.0
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
.|+.|+|++|.|+ .+|..|++|++|+.|+|++|.|+ .+|..++. ++|+.|+|++|+|+ .+|..|+.|++|+.|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 3677888899888 78888899999999999999998 88888888 88999999999887 888888889999999999
Q ss_pred cccCcccCchhHHhc
Q 009515 504 NNLLEGRVPEELYSI 518 (533)
Q Consensus 504 ~N~l~g~lP~~l~~l 518 (533)
+|+|+|.+|..++.+
T Consensus 325 ~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 325 GNPLEKQFLKILTEK 339 (727)
T ss_dssp TSCCCSHHHHHHHHH
T ss_pred CCccCCCChHHHhhc
Confidence 999988888777553
No 97
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.17 E-value=6.2e-11 Score=128.20 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=73.8
Q ss_pred eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQ-VIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~-~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv 413 (533)
.++.+++++|+++...+..... +..++.+++..+.+..++++ +..+
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~i~~i~~~~~~~l------------------------------- 75 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFS--FPELQVLDLSRCEIQTIEDGAYQSL------------------------------- 75 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTT--CSSCCEEECTTCCCCEECTTTTTTC-------------------------------
T ss_pred cccEEEccCCccCccChhHhhC--CCCceEEECCCCcCCccCcccccCc-------------------------------
Confidence 3566777777776433334444 66677777776665444322 1111
Q ss_pred eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCcccc-CCCccC
Q 009515 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG-SIPDSL 491 (533)
Q Consensus 414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g-~iP~~~ 491 (533)
..|+.|+|++|.+++..|..|.++++|++|++++|++++..+..++. ++|++|+|++|++++ .+|..+
T Consensus 76 ----------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~ 145 (570)
T 2z63_A 76 ----------SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145 (570)
T ss_dssp ----------TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG
T ss_pred ----------hhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh
Confidence 12444555555554444444555555555555555554222223444 455555555555443 244445
Q ss_pred CCCcCCCEEEeecccCcccCchhHHhcccCC----cEEEccCCC
Q 009515 492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHG----GAFEYVKTP 531 (533)
Q Consensus 492 ~~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L----~~L~ls~N~ 531 (533)
+++++|++|++++|++++..|..+..+.. | +.|++++|+
T Consensus 146 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQ-MPLLNLSLDLSLNP 188 (570)
T ss_dssp GGCTTCCEEECTTSCCCEECGGGGHHHHT-CTTCCCEEECTTCC
T ss_pred cccCCCCEEeCcCCccceecHHHccchhc-cchhhhhcccCCCC
Confidence 55555555555555554333333433332 3 444444443
No 98
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.16 E-value=1.2e-11 Score=125.29 Aligned_cols=168 Identities=15% Similarity=0.255 Sum_probs=113.7
Q ss_pred eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 009515 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~ 414 (533)
.++.+++++|.+. .+++ ... +..++.+.+..+.+...+. +..+.+++... .. . |....+.
T Consensus 178 ~L~~L~l~~n~l~-~~~~-~~~--l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~-l~----~----------n~l~~~~ 237 (347)
T 4fmz_A 178 DLYSLSLNYNQIE-DISP-LAS--LTSLHYFTAYVNQITDITP-VANMTRLNSLK-IG----N----------NKITDLS 237 (347)
T ss_dssp TCSEEECTTSCCC-CCGG-GGG--CTTCCEEECCSSCCCCCGG-GGGCTTCCEEE-CC----S----------SCCCCCG
T ss_pred CCCEEEccCCccc-cccc-ccC--CCccceeecccCCCCCCch-hhcCCcCCEEE-cc----C----------CccCCCc
Confidence 4556667777665 3333 222 5666666766666655544 22222222211 10 0 1111111
Q ss_pred ecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCC
Q 009515 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (533)
Q Consensus 415 c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~ 493 (533)
. ...++.|+.|++++|.+++. +.+..+++|+.|++++|.+++ +| .+.. ++|+.|++++|++++..|..+++
T Consensus 238 ~----~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 309 (347)
T 4fmz_A 238 P----LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-IS-VLNNLSQLNSLFLNNNQLGNEDMEVIGG 309 (347)
T ss_dssp G----GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEEECCSSCCCGGGHHHHHT
T ss_pred c----hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-Ch-hhcCCCCCCEEECcCCcCCCcChhHhhc
Confidence 1 12334588999999999863 568899999999999999984 43 4666 99999999999999888888999
Q ss_pred CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
+++|+.|++++|++++..| +..+.+ |+.|++++|+|.
T Consensus 310 l~~L~~L~L~~n~l~~~~~--~~~l~~-L~~L~l~~N~i~ 346 (347)
T 4fmz_A 310 LTNLTTLFLSQNHITDIRP--LASLSK-MDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSSCCCCGG--GGGCTT-CSEESSSCC---
T ss_pred cccCCEEEccCCccccccC--hhhhhc-cceeehhhhccc
Confidence 9999999999999995444 777766 999999999874
No 99
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.16 E-value=3.7e-11 Score=136.63 Aligned_cols=108 Identities=21% Similarity=0.174 Sum_probs=57.9
Q ss_pred EEEEEEeCCCCCccccchh--hhccCCCCEEEccCCCCCCCCC-CccCC-CCccEEEccCCccccCCCccCCCC--cCCC
Q 009515 425 VISQIDLGSQGLKGYISDK--ISLLSNLVNLNLSTNSLGGTLP-SGLGQ-QSLVRLDLSDNQFTGSIPDSLTSS--SKLQ 498 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~--l~~L~~L~~L~Ls~N~l~g~iP-~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l--~~L~ 498 (533)
.|+.|+|++|.+.+.++.. +.++++|+.|+|++|.+++..| ..++. ++|+.|+|++|++++..|..+..+ ++|+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 3555555555555544443 5555555555555555554433 23444 555555555555555555555544 5555
Q ss_pred EEEeecccCcccCchhHHhccc-----CCcEEEccCCCC
Q 009515 499 LVLLNNNLLEGRVPEELYSIGV-----HGGAFEYVKTPN 532 (533)
Q Consensus 499 ~L~L~~N~l~g~lP~~l~~l~~-----~L~~L~ls~N~l 532 (533)
.|+|+.|.+.+.+|..+..+.. .|+.|++++|.+
T Consensus 178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 216 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216 (844)
T ss_dssp CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS
T ss_pred eEECCCCccccccccchhhcCCccccCceeEEecCCCcC
Confidence 5555555555555544332211 266667766654
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.16 E-value=1.3e-11 Score=134.68 Aligned_cols=100 Identities=24% Similarity=0.347 Sum_probs=75.6
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L 502 (533)
+.|+.|+|++|.+.+ + +.+..|++|+.|+|++|.+++. ..+.. ++|+.|+|++|++++..| +..|++|+.|+|
T Consensus 109 ~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 109 KKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp TTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred CCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence 457788888888875 2 4578888888888888888743 45666 888888888888886555 778888888888
Q ss_pred ecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
++|+++ .+| .+..+.. |+.|+|++|++
T Consensus 183 s~N~i~-~l~-~l~~l~~-L~~L~L~~N~l 209 (605)
T 1m9s_A 183 SKNHIS-DLR-ALAGLKN-LDVLELFSQEC 209 (605)
T ss_dssp CSSCCC-BCG-GGTTCTT-CSEEECCSEEE
T ss_pred cCCCCC-CCh-HHccCCC-CCEEEccCCcC
Confidence 888888 454 4666665 88888888764
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.16 E-value=3.4e-11 Score=112.11 Aligned_cols=107 Identities=20% Similarity=0.128 Sum_probs=91.8
Q ss_pred eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
++.|+.|++++|.+. .++.+..+++|+.|++++|.+++..|..+.. ++|+.|+|++|++++..|..++.+++|+.|+
T Consensus 65 l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 65 AHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp CTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 345888999999765 3457899999999999999999878888888 9999999999999988888999999999999
Q ss_pred eecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
|++|++.+.+| .+..+.. |+.|++++|++.
T Consensus 143 L~~n~~i~~~~-~l~~l~~-L~~L~l~~n~i~ 172 (197)
T 4ezg_A 143 LSYNGAITDIM-PLKTLPE-LKSLNIQFDGVH 172 (197)
T ss_dssp CCSCTBCCCCG-GGGGCSS-CCEEECTTBCCC
T ss_pred ccCCCCccccH-hhcCCCC-CCEEECCCCCCc
Confidence 99998444787 5777776 999999999863
No 102
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=3.4e-11 Score=109.96 Aligned_cols=101 Identities=21% Similarity=0.336 Sum_probs=78.5
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCcc-CC-CCccEEEccCCccccCCCc--cCCCCcCCCEE
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFTGSIPD--SLTSSSKLQLV 500 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l-~~-~~L~~L~Ls~N~l~g~iP~--~~~~l~~L~~L 500 (533)
.|+.|+|++|.+++. +.+..+++|+.|++++|.++ .+|+.+ .. ++|+.|+|++|+++ .+|. .+..+++|+.|
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEE
Confidence 578888888888864 67788888888888888888 455554 55 88888888888886 6776 67788888888
Q ss_pred EeecccCcccCchh----HHhcccCCcEEEccCCC
Q 009515 501 LLNNNLLEGRVPEE----LYSIGVHGGAFEYVKTP 531 (533)
Q Consensus 501 ~L~~N~l~g~lP~~----l~~l~~~L~~L~ls~N~ 531 (533)
++++|.++ .+|.. +..+.. |+.||+++|.
T Consensus 119 ~l~~N~i~-~~~~~~~~~~~~l~~-L~~Ld~~~n~ 151 (176)
T 1a9n_A 119 CILRNPVT-NKKHYRLYVIYKVPQ-VRVLDFQKVK 151 (176)
T ss_dssp ECCSSGGG-GSTTHHHHHHHHCTT-CSEETTEECC
T ss_pred EecCCCCC-CcHhHHHHHHHHCCc-cceeCCCcCC
Confidence 88888887 67764 666665 8888888875
No 103
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.14 E-value=7.1e-11 Score=130.78 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=57.8
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCC-ccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~-~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L 502 (533)
.|+.|+|++|.+++..|..+.++++|+.|++++|+++ .+|. .+.. ++|++|+|++|++++..|..++++++|++|+|
T Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 3455555555555555555555555555555555555 3333 3444 55666666666555444455555666666666
Q ss_pred ecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
++|++++..|..+..+.. |+.|++++|++
T Consensus 129 s~n~l~~~~~~~~~~l~~-L~~L~L~~n~l 157 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLEN-LQELLLSNNKI 157 (680)
T ss_dssp CSSCCSCCCCCSSSCCTT-CCEEECCSSCC
T ss_pred CCCcccccCchhhccccc-CCEEEccCCcc
Confidence 666665544544544443 66666666554
No 104
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.13 E-value=5.6e-11 Score=114.01 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=73.9
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCC-CCCCCCCccCC-CCccEEEccC-CccccCCCccCCCCcCCCEEE
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-QSLVRLDLSD-NQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~iP~~l~~-~~L~~L~Ls~-N~l~g~iP~~~~~l~~L~~L~ 501 (533)
.++.|+|++|++++..+..+..+++|+.|++++|+ +++..+..+.. ++|+.|+|++ |++++..+..+.++++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 47788888888887666678888888888888886 76333345666 7888888887 888855556677778888888
Q ss_pred eecccCcccCchhHHhcccCCc---EEEccCC
Q 009515 502 LNNNLLEGRVPEELYSIGVHGG---AFEYVKT 530 (533)
Q Consensus 502 L~~N~l~g~lP~~l~~l~~~L~---~L~ls~N 530 (533)
+++|+++ .+|. +..+.. |+ .|++++|
T Consensus 112 l~~n~l~-~lp~-~~~l~~-L~~L~~L~l~~N 140 (239)
T 2xwt_C 112 IFNTGLK-MFPD-LTKVYS-TDIFFILEITDN 140 (239)
T ss_dssp EEEECCC-SCCC-CTTCCB-CCSEEEEEEESC
T ss_pred CCCCCCc-cccc-cccccc-cccccEEECCCC
Confidence 8888777 3665 444443 55 6666666
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=7.9e-11 Score=115.01 Aligned_cols=99 Identities=20% Similarity=0.233 Sum_probs=54.1
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L 502 (533)
+.|+.|+|++|++++ +|. +.. ++|+.|++++|++++ ++ .+.. ++|+.|+|++|++++ +| .+..+++|+.|+|
T Consensus 85 ~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 85 TKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDL 157 (263)
T ss_dssp SSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEEC
T ss_pred CCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEEC
Confidence 345566666666654 222 122 566666666666653 32 3444 666666666666663 33 4556666666666
Q ss_pred ecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
++|++++. ..+..+.. |+.|++++|++
T Consensus 158 ~~N~i~~~--~~l~~l~~-L~~L~l~~N~~ 184 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLKK-VNWIDLTGQKC 184 (263)
T ss_dssp TTSCCCBC--TTSTTCCC-CCEEEEEEEEE
T ss_pred CCCcCcch--HHhccCCC-CCEEeCCCCcc
Confidence 66666632 34444444 66666666543
No 106
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.11 E-value=4.2e-11 Score=119.81 Aligned_cols=108 Identities=17% Similarity=0.144 Sum_probs=55.4
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCC--CCCcc--CC-CCccEEEccCCcccc--CCC-ccCCCCcC
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT--LPSGL--GQ-QSLVRLDLSDNQFTG--SIP-DSLTSSSK 496 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~--iP~~l--~~-~~L~~L~Ls~N~l~g--~iP-~~~~~l~~ 496 (533)
.|+.|+|++|++.+..+..++.+++|+.|++++|++.|. +|..+ .. ++|+.|+|++|++++ .++ ..+..+++
T Consensus 150 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~ 229 (312)
T 1wwl_A 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229 (312)
T ss_dssp TCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC
T ss_pred CCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCC
Confidence 355566666666555555555666666666666655543 22233 33 556666666666552 122 12234556
Q ss_pred CCEEEeecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 497 LQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 497 L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
|+.|+|++|++++..|...+....+|+.|++++|+|
T Consensus 230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence 666666666666444322222122366666666654
No 107
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.10 E-value=1.6e-10 Score=119.13 Aligned_cols=153 Identities=18% Similarity=0.195 Sum_probs=109.5
Q ss_pred hhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCceeEEEEEEeCCCCCcc
Q 009515 359 ISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG 438 (533)
Q Consensus 359 Ln~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~c~~~~~~~~~~L~~L~Ls~n~l~g 438 (533)
+..++.+.+..+.+..+|.++ +..++..-.+ +-.+ +...++. +.....+..|+.|+|++|.+.+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~--~~~l~~L~~L----~L~~--------n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~ 107 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAAL--LDSFRQVELL----NLND--------LQIEEID--TYAFAYAHTIQKLYMGFNAIRY 107 (390)
T ss_dssp GCCCSEEEEESCEESEECTHH--HHHCCCCSEE----ECTT--------SCCCEEC--TTTTTTCTTCCEEECCSSCCCC
T ss_pred cCCceEEEecCCchhhCChhH--hcccccCcEE----ECCC--------CcccccC--hhhccCCCCcCEEECCCCCCCc
Confidence 567777777777777787753 2223221110 1111 1122221 1123345668999999999998
Q ss_pred ccchhhhccCCCCEEEccCCCCCCCCCCcc-CC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhHH
Q 009515 439 YISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELY 516 (533)
Q Consensus 439 ~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l-~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l~ 516 (533)
..|..+..+++|++|++++|.++ .+|..+ .. ++|+.|+|++|++++..|..+.++++|+.|++++|++++ ++ +.
T Consensus 108 ~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~--~~ 183 (390)
T 3o6n_A 108 LPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD--LS 183 (390)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC--GG
T ss_pred CCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc--cc
Confidence 88888999999999999999999 677664 66 999999999999998888889999999999999999984 44 34
Q ss_pred hcccCCcEEEccCCCC
Q 009515 517 SIGVHGGAFEYVKTPN 532 (533)
Q Consensus 517 ~l~~~L~~L~ls~N~l 532 (533)
.+.. |+.|++++|.+
T Consensus 184 ~l~~-L~~L~l~~n~l 198 (390)
T 3o6n_A 184 LIPS-LFHANVSYNLL 198 (390)
T ss_dssp GCTT-CSEEECCSSCC
T ss_pred cccc-cceeecccccc
Confidence 4444 77777777654
No 108
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.10 E-value=9.5e-11 Score=133.26 Aligned_cols=111 Identities=15% Similarity=0.123 Sum_probs=88.7
Q ss_pred CceeEEEEEEeCCCCCcccc-chhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCcc--CCCCcC
Q 009515 421 ETAVVISQIDLGSQGLKGYI-SDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS--LTSSSK 496 (533)
Q Consensus 421 ~~~~~L~~L~Ls~n~l~g~~-p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~--~~~l~~ 496 (533)
..+..|+.|+|++|.+.+.+ |..|.++++|+.|+|++|.+++..|..+.. ++|+.|+|++|++++.+|.. ++++++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 34556788888888666666 677888888888888888888777888888 88888899888888877765 888888
Q ss_pred CCEEEeecccCcccCc-hhHHhcccCCcEEEccCCCC
Q 009515 497 LQLVLLNNNLLEGRVP-EELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 497 L~~L~L~~N~l~g~lP-~~l~~l~~~L~~L~ls~N~l 532 (533)
|++|+|++|.+++..| ..+..+.+ |+.|+|++|++
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~-L~~L~Ls~N~i 160 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNS-LKSIDFSSNQI 160 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSS-CCEEEEESSCC
T ss_pred CCEEECCCCcccccccchhHhhCCC-CCEEECCCCcC
Confidence 9999999988886544 45677665 88999988876
No 109
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.10 E-value=1.4e-10 Score=126.75 Aligned_cols=94 Identities=28% Similarity=0.305 Sum_probs=73.5
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~ 504 (533)
|+.|++++|.++ .+|. .+++|+.|++++|+++ .+| .. ++|+.|+|++|+++ .+|. .+++|+.|+|++
T Consensus 203 L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~ 270 (622)
T 3g06_A 203 LYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR 270 (622)
T ss_dssp CCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred hhEEECcCCccc-ccCC---CCCCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence 444555555544 2332 2377889999999998 466 33 88999999999999 6776 668899999999
Q ss_pred ccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 505 NLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 505 N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
|+++ .+|..+..+.. |+.|+|++|+++
T Consensus 271 N~L~-~lp~~l~~l~~-L~~L~L~~N~l~ 297 (622)
T 3g06_A 271 NQLT-RLPESLIHLSS-ETTVNLEGNPLS 297 (622)
T ss_dssp SCCC-SCCGGGGGSCT-TCEEECCSCCCC
T ss_pred CCCC-cCCHHHhhccc-cCEEEecCCCCC
Confidence 9999 89999988876 999999999874
No 110
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.09 E-value=4.6e-11 Score=109.11 Aligned_cols=102 Identities=18% Similarity=0.190 Sum_probs=75.6
Q ss_pred EEEEEEeCCCCCccccchhhhccC-CCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515 425 VISQIDLGSQGLKGYISDKISLLS-NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L 502 (533)
.|+.|++++|+++. ++. +..+. +|+.|++++|.+++ + ..+.. ++|+.|+|++|++++..|..+..+++|+.|+|
T Consensus 20 ~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 20 RDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp SCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred CceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 47788888888884 443 55554 88888888888884 3 56666 88888888888888543344478888888888
Q ss_pred ecccCcccCch--hHHhcccCCcEEEccCCCC
Q 009515 503 NNNLLEGRVPE--ELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 503 ~~N~l~g~lP~--~l~~l~~~L~~L~ls~N~l 532 (533)
++|+++ .+|. .+..+.. |+.|++++|++
T Consensus 96 ~~N~i~-~~~~~~~l~~l~~-L~~L~l~~N~i 125 (176)
T 1a9n_A 96 TNNSLV-ELGDLDPLASLKS-LTYLCILRNPV 125 (176)
T ss_dssp CSCCCC-CGGGGGGGGGCTT-CCEEECCSSGG
T ss_pred CCCcCC-cchhhHhhhcCCC-CCEEEecCCCC
Confidence 888886 6776 6666665 88888888876
No 111
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.09 E-value=1.6e-10 Score=125.19 Aligned_cols=102 Identities=22% Similarity=0.151 Sum_probs=47.9
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~ 504 (533)
++.|+|++|.+++..+..|.++++|+.|++++|++++..|..+.. ++|++|+|++|+++ .+|.. .+++|++|+|++
T Consensus 54 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~ 130 (562)
T 3a79_B 54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSF 130 (562)
T ss_dssp CCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCS
T ss_pred cCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCC
Confidence 444555555554444444455555555555555554444444444 44555555555544 34433 444455555555
Q ss_pred ccCcc-cCchhHHhcccCCcEEEccCCC
Q 009515 505 NLLEG-RVPEELYSIGVHGGAFEYVKTP 531 (533)
Q Consensus 505 N~l~g-~lP~~l~~l~~~L~~L~ls~N~ 531 (533)
|++++ .+|..+..+.+ |+.|++++|+
T Consensus 131 N~l~~l~~p~~~~~l~~-L~~L~L~~n~ 157 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTK-LTFLGLSAAK 157 (562)
T ss_dssp SCCSBCCCCGGGGGCTT-CCEEEEECSB
T ss_pred CCccccCchHhhcccCc-ccEEecCCCc
Confidence 54442 22344444433 4445544444
No 112
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.09 E-value=8.7e-11 Score=118.96 Aligned_cols=168 Identities=17% Similarity=0.233 Sum_probs=117.1
Q ss_pred eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 009515 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~ 414 (533)
.++.++++++.+. .+++ ... +..++.+.+..+.+..++. +..+..++... .. . +...++.
T Consensus 156 ~L~~L~l~~~~~~-~~~~-~~~--l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~-l~----~----------n~l~~~~ 215 (347)
T 4fmz_A 156 GLNYLTVTESKVK-DVTP-IAN--LTDLYSLSLNYNQIEDISP-LASLTSLHYFT-AY----V----------NQITDIT 215 (347)
T ss_dssp TCCEEECCSSCCC-CCGG-GGG--CTTCSEEECTTSCCCCCGG-GGGCTTCCEEE-CC----S----------SCCCCCG
T ss_pred CCcEEEecCCCcC-Cchh-hcc--CCCCCEEEccCCccccccc-ccCCCccceee-cc----c----------CCCCCCc
Confidence 4556666666654 2222 333 5667777777777666654 22222221110 00 0 0111111
Q ss_pred ecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCC
Q 009515 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (533)
Q Consensus 415 c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~ 493 (533)
. ...++.|+.|++++|.+++..+ +..+++|+.|++++|.+++ + +.+.. ++|+.|++++|++++ +| .+..
T Consensus 216 ~----~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~ 285 (347)
T 4fmz_A 216 P----VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNN 285 (347)
T ss_dssp G----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGG
T ss_pred h----hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcC
Confidence 1 1233468999999999996544 8999999999999999984 4 45667 999999999999995 44 5889
Q ss_pred CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
+++|+.|++++|++++..|..+..+.. |+.|++++|++.
T Consensus 286 l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~l~ 324 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDMEVIGGLTN-LTTLFLSQNHIT 324 (347)
T ss_dssp CTTCSEEECCSSCCCGGGHHHHHTCTT-CSEEECCSSSCC
T ss_pred CCCCCEEECcCCcCCCcChhHhhcccc-CCEEEccCCccc
Confidence 999999999999999888888888876 999999999873
No 113
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.07 E-value=5.4e-10 Score=101.91 Aligned_cols=104 Identities=20% Similarity=0.199 Sum_probs=84.7
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~ 504 (533)
.+.++++++++. .+|..+ .++|+.|++++|++++..+..+.. ++|+.|+|++|++++..+..+..+++|+.|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456899999998 456544 479999999999999655555677 9999999999999966666789999999999999
Q ss_pred ccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 505 NLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 505 N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
|++++..+..+..+.. |+.|++++|++.
T Consensus 86 N~l~~~~~~~~~~l~~-L~~L~l~~N~l~ 113 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQ-LKELALDTNQLK 113 (177)
T ss_dssp SCCCCCCTTTTTTCTT-CCEEECCSSCCS
T ss_pred CCccccCHHHhhCCcc-cCEEECcCCcce
Confidence 9999444444566665 999999999873
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.06 E-value=7.5e-11 Score=127.52 Aligned_cols=92 Identities=26% Similarity=0.358 Sum_probs=79.1
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
.|+.|+|++|.+++ +|. .+++|+.|+|++|++++ +|. . ++|+.|+|++|++++ +|. +. ++|+.|+|+
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 37889999999997 666 68999999999999995 776 5 899999999999996 888 66 899999999
Q ss_pred cccCcccCchhHHhcccCC-------cEEEccCCCCC
Q 009515 504 NNLLEGRVPEELYSIGVHG-------GAFEYVKTPNC 533 (533)
Q Consensus 504 ~N~l~g~lP~~l~~l~~~L-------~~L~ls~N~l~ 533 (533)
+|+++ .+|. +.. +| +.|+|++|+|.
T Consensus 189 ~N~L~-~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~ 220 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV---RNHHSEETEIFFRCRENRIT 220 (571)
T ss_dssp SSCCS-SCCC-CC-----------CCEEEECCSSCCC
T ss_pred CCCCC-chhh-HHH---hhhcccccceEEecCCCcce
Confidence 99999 8888 543 37 99999999874
No 115
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.04 E-value=1.6e-10 Score=114.55 Aligned_cols=101 Identities=21% Similarity=0.258 Sum_probs=86.1
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L 502 (533)
..|+.|+|++|.+++ + +.+..+++|+.|++++|++++ + +.+.. ++|+.|+|++|++++. ..+..+++|+.|+|
T Consensus 90 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 90 KNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSL 163 (291)
T ss_dssp TTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEEC
T ss_pred CCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEc
Confidence 458899999999986 3 349999999999999999985 4 45667 9999999999999954 57899999999999
Q ss_pred ecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 503 NNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
++|++++ ++. +..+.. |+.|++++|++.
T Consensus 164 ~~N~l~~-~~~-l~~l~~-L~~L~L~~N~i~ 191 (291)
T 1h6t_A 164 EDNQISD-IVP-LAGLTK-LQNLYLSKNHIS 191 (291)
T ss_dssp CSSCCCC-CGG-GTTCTT-CCEEECCSSCCC
T ss_pred cCCcccc-chh-hcCCCc-cCEEECCCCcCC
Confidence 9999994 554 777766 999999999874
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.04 E-value=1.5e-10 Score=126.24 Aligned_cols=102 Identities=23% Similarity=0.280 Sum_probs=87.3
Q ss_pred eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
++.|+.|+|++|.+.+ + +.+..|++|+.|+|++|.+++ + +.+.. ++|+.|+|++|++++. ..+..|++|+.|+
T Consensus 86 l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 86 LKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS 159 (605)
T ss_dssp CTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEE
T ss_pred CCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEE
Confidence 4458899999999986 3 379999999999999999984 4 45677 9999999999999964 5789999999999
Q ss_pred eecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
|++|++++..| +..+.. |+.|+|++|+|+
T Consensus 160 Ls~N~l~~~~~--l~~l~~-L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 160 LEDNQISDIVP--LAGLTK-LQNLYLSKNHIS 188 (605)
T ss_dssp CCSSCCCCCGG--GTTCTT-CCEEECCSSCCC
T ss_pred CcCCcCCCchh--hccCCC-CCEEECcCCCCC
Confidence 99999996545 777766 999999999874
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.03 E-value=2e-10 Score=121.26 Aligned_cols=161 Identities=15% Similarity=0.094 Sum_probs=116.8
Q ss_pred eeeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCcce
Q 009515 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (533)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv 413 (533)
..++.+++++|++++ ++ .+. +..++.+++..+.+..++ +..+.+|+... .. . +...++
T Consensus 64 ~~L~~L~Ls~n~l~~-~~--~~~--l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~-L~----~----------N~l~~l 121 (457)
T 3bz5_A 64 TGLTKLICTSNNITT-LD--LSQ--NTNLTYLACDSNKLTNLD--VTPLTKLTYLN-CD----T----------NKLTKL 121 (457)
T ss_dssp TTCSEEECCSSCCSC-CC--CTT--CTTCSEEECCSSCCSCCC--CTTCTTCCEEE-CC----S----------SCCSCC
T ss_pred CCCCEEEccCCcCCe-Ec--ccc--CCCCCEEECcCCCCceee--cCCCCcCCEEE-CC----C----------CcCCee
Confidence 467788888888874 32 444 677888888888877664 33333332211 11 1 122222
Q ss_pred eecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCC
Q 009515 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (533)
Q Consensus 414 ~c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~ 492 (533)
. ...+..|+.|++++|++++. .++.+++|+.|++++|+..+.+ .+.. ++|+.|++++|++++ +| ++
T Consensus 122 ~-----~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~ 188 (457)
T 3bz5_A 122 D-----VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VS 188 (457)
T ss_dssp C-----CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CT
T ss_pred c-----CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cc
Confidence 1 23345688999999999974 3888999999999999777677 3666 999999999999996 66 88
Q ss_pred CCcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 493 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 493 ~l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
.+++|+.|++++|++++ ++ +..+.. |+.|++++|++.
T Consensus 189 ~l~~L~~L~l~~N~l~~-~~--l~~l~~-L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 189 QNKLLNRLNCDTNNITK-LD--LNQNIQ-LTFLDCSSNKLT 225 (457)
T ss_dssp TCTTCCEEECCSSCCSC-CC--CTTCTT-CSEEECCSSCCS
T ss_pred cCCCCCEEECcCCcCCe-ec--cccCCC-CCEEECcCCccc
Confidence 99999999999999995 43 667665 999999999873
No 118
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.03 E-value=1e-10 Score=123.72 Aligned_cols=101 Identities=20% Similarity=0.266 Sum_probs=79.3
Q ss_pred eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
++.|+.|+|++|.+.+..+ +..+++|+.|++++|++++..| +.. ++|+.|++++|++++. ..+..+++|+.|+
T Consensus 286 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 3457888888888886544 7888888888888888886655 556 8888888888888854 4678888899999
Q ss_pred eecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+++|++++..| +..+.. |+.|++++|++
T Consensus 360 l~~n~l~~~~~--~~~l~~-L~~L~l~~n~~ 387 (466)
T 1o6v_A 360 AGHNQISDLTP--LANLTR-ITQLGLNDQAW 387 (466)
T ss_dssp CCSSCCCBCGG--GTTCTT-CCEEECCCEEE
T ss_pred CCCCccCccch--hhcCCC-CCEEeccCCcc
Confidence 99998886665 667665 88888888864
No 119
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.02 E-value=1.9e-10 Score=121.51 Aligned_cols=96 Identities=22% Similarity=0.223 Sum_probs=69.8
Q ss_pred eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
+..|+.|++++|++++ +| +..+++|+.|++++|++++. .+.. ++|+.|++++|++++ +| ++.+++|+.|+
T Consensus 169 l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~ 239 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFD 239 (457)
T ss_dssp CTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEE
T ss_pred CCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEE
Confidence 4457888888888886 44 77888888888888888854 3666 888888888888886 66 78888888888
Q ss_pred eecccCcccCchhHHhcccCCcEEEccCCC
Q 009515 502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTP 531 (533)
Q Consensus 502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~ 531 (533)
+++|++++. | +..+.. |+.|++++|+
T Consensus 240 l~~N~l~~~-~--~~~l~~-L~~L~l~~n~ 265 (457)
T 3bz5_A 240 CSVNPLTEL-D--VSTLSK-LTTLHCIQTD 265 (457)
T ss_dssp CCSSCCSCC-C--CTTCTT-CCEEECTTCC
T ss_pred eeCCcCCCc-C--HHHCCC-CCEEeccCCC
Confidence 888888854 4 223332 4444444443
No 120
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.00 E-value=1.1e-10 Score=123.24 Aligned_cols=97 Identities=20% Similarity=0.242 Sum_probs=76.0
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
..|+.|++++|.+++ +| +++.+++|++|++++|++++ +|..+ .+|+.|++++|++++ +| .++++++|+.|+++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCCCEEECC
Confidence 357888888888886 66 58888888888888888884 66433 588888888888885 67 58888899999999
Q ss_pred cccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 504 NNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+|+++ .+|... .+|+.|++++|++
T Consensus 204 ~N~l~-~l~~~~----~~L~~L~l~~n~l 227 (454)
T 1jl5_A 204 NNSLK-KLPDLP----LSLESIVAGNNIL 227 (454)
T ss_dssp SSCCS-SCCCCC----TTCCEEECCSSCC
T ss_pred CCcCC-cCCCCc----CcccEEECcCCcC
Confidence 99888 466532 2488899998876
No 121
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.99 E-value=2.2e-10 Score=121.17 Aligned_cols=166 Identities=18% Similarity=0.283 Sum_probs=112.1
Q ss_pred eeeEeecCCceEEEEecccchhhhhhccccccccCCCCCCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCCccee
Q 009515 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (533)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~~~iLn~lEi~~l~~~~~~~~p~~~~~l~~lk~~~~~~~~~~w~gdpc~~~~~~~w~gv~ 414 (533)
.++.+++++|++.. +++ .+. +..++.+.+..+.+..++. +..+.+|+... ... +...++.
T Consensus 200 ~L~~L~l~~n~l~~-~~~-~~~--l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~-l~~--------------n~l~~~~ 259 (466)
T 1o6v_A 200 NLESLIATNNQISD-ITP-LGI--LTNLDELSLNGNQLKDIGT-LASLTNLTDLD-LAN--------------NQISNLA 259 (466)
T ss_dssp TCSEEECCSSCCCC-CGG-GGG--CTTCCEEECCSSCCCCCGG-GGGCTTCSEEE-CCS--------------SCCCCCG
T ss_pred CCCEEEecCCcccc-ccc-ccc--cCCCCEEECCCCCcccchh-hhcCCCCCEEE-CCC--------------Cccccch
Confidence 46667777776653 222 222 5667777777776665532 22222222111 100 1111111
Q ss_pred ecCCCCCceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCC
Q 009515 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (533)
Q Consensus 415 c~~~~~~~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~ 493 (533)
. ...++.|+.|++++|.+++..+ +..+++|+.|++++|++++..| +.. ++|+.|+|++|++++..| +..
T Consensus 260 ~----~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~ 329 (466)
T 1o6v_A 260 P----LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSS 329 (466)
T ss_dssp G----GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGG
T ss_pred h----hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hcc
Confidence 1 1223458889999999986544 8899999999999999985443 666 999999999999997665 788
Q ss_pred CcCCCEEEeecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 494 l~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
+++|+.|++++|++++ + ..+..+.. |+.|++++|++.
T Consensus 330 l~~L~~L~l~~n~l~~-~-~~l~~l~~-L~~L~l~~n~l~ 366 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSD-V-SSLANLTN-INWLSAGHNQIS 366 (466)
T ss_dssp CTTCCEEECCSSCCCC-C-GGGTTCTT-CCEEECCSSCCC
T ss_pred CccCCEeECCCCccCC-c-hhhccCCC-CCEEeCCCCccC
Confidence 9999999999999995 4 45777766 999999999873
No 122
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.98 E-value=2.7e-10 Score=113.81 Aligned_cols=110 Identities=18% Similarity=0.076 Sum_probs=89.6
Q ss_pred ceeEEEEEEeCCCCCccccc----hhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccC--C--CccCC
Q 009515 422 TAVVISQIDLGSQGLKGYIS----DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS--I--PDSLT 492 (533)
Q Consensus 422 ~~~~L~~L~Ls~n~l~g~~p----~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~--i--P~~~~ 492 (533)
.+..|+.|+|++|.+.+..+ ..+..+++|+.|++++|++++..|..+.. ++|+.|+|++|++.+. + +..++
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 34678999999999998655 45567999999999999999777788888 9999999999998763 3 23347
Q ss_pred CCcCCCEEEeecccCcccCchh---H-HhcccCCcEEEccCCCCC
Q 009515 493 SSSKLQLVLLNNNLLEGRVPEE---L-YSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 493 ~l~~L~~L~L~~N~l~g~lP~~---l-~~l~~~L~~L~ls~N~l~ 533 (533)
.+++|++|+|++|+++ .+|.. + ..+.. |+.|+|++|++.
T Consensus 195 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~-L~~L~Ls~N~l~ 237 (310)
T 4glp_A 195 KFPAIQNLALRNTGME-TPTGVCAALAAAGVQ-PHSLDLSHNSLR 237 (310)
T ss_dssp SSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCC-CSSEECTTSCCC
T ss_pred cCCCCCEEECCCCCCC-chHHHHHHHHhcCCC-CCEEECCCCCCC
Confidence 8999999999999998 55543 3 45455 999999999873
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.97 E-value=7.4e-12 Score=129.10 Aligned_cols=108 Identities=18% Similarity=0.237 Sum_probs=90.8
Q ss_pred EEEEEEeCCCCCc--c---ccchhhhccCCCCEEEccCCCCC----CCCCCccCC-CCccEEEccCCccccC----CCcc
Q 009515 425 VISQIDLGSQGLK--G---YISDKISLLSNLVNLNLSTNSLG----GTLPSGLGQ-QSLVRLDLSDNQFTGS----IPDS 490 (533)
Q Consensus 425 ~L~~L~Ls~n~l~--g---~~p~~l~~L~~L~~L~Ls~N~l~----g~iP~~l~~-~~L~~L~Ls~N~l~g~----iP~~ 490 (533)
.|+.|+|++|++. | .++..+..+++|+.|+|++|.++ +.+|..+.. ++|+.|+|++|++++. +|..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 267 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHH
Confidence 5889999999998 3 34448889999999999999996 678888888 9999999999999876 5666
Q ss_pred C--CCCcCCCEEEeecccCcc----cCchhHHh-cccCCcEEEccCCCCC
Q 009515 491 L--TSSSKLQLVLLNNNLLEG----RVPEELYS-IGVHGGAFEYVKTPNC 533 (533)
Q Consensus 491 ~--~~l~~L~~L~L~~N~l~g----~lP~~l~~-l~~~L~~L~ls~N~l~ 533 (533)
+ +.+++|+.|+|++|++++ .+|..+.. +.. |+.|++++|++.
T Consensus 268 l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~-L~~L~l~~N~l~ 316 (386)
T 2ca6_A 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD-LLFLELNGNRFS 316 (386)
T ss_dssp HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT-CCEEECTTSBSC
T ss_pred HhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC-ceEEEccCCcCC
Confidence 6 448999999999999996 48988844 555 999999999874
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.93 E-value=5e-10 Score=118.13 Aligned_cols=81 Identities=26% Similarity=0.371 Sum_probs=42.0
Q ss_pred EEEEEeCCCCCccccchhhhcc-CCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEeec
Q 009515 426 ISQIDLGSQGLKGYISDKISLL-SNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L-~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~ 504 (533)
|+.|++++|.+++ ++ .+ ++|+.|++++|++++ +|..+ ++|+.|++++|+++ .+|. .+++|+.|++++
T Consensus 299 L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~ 366 (454)
T 1jl5_A 299 LYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPALP--PRLERLIASFNHLA-EVPE---LPQNLKQLHVEY 366 (454)
T ss_dssp CCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred CCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-ccccC--CcCCEEECCCCccc-cccc---hhhhccEEECCC
Confidence 4455555555543 11 12 355566666666553 44322 45556666666655 4554 345566666666
Q ss_pred ccCcc--cCchhHHhc
Q 009515 505 NLLEG--RVPEELYSI 518 (533)
Q Consensus 505 N~l~g--~lP~~l~~l 518 (533)
|++++ .+|..+..+
T Consensus 367 N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 367 NPLREFPDIPESVEDL 382 (454)
T ss_dssp SCCSSCCCCCTTCCEE
T ss_pred CCCCcCCCChHHHHhh
Confidence 66655 455555444
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.92 E-value=3.4e-11 Score=112.16 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=88.8
Q ss_pred eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
+..|+.|+|++|.+++ +| .+..+++|+.|++++|.++ .+|..+.. ++|+.|+|++|++++ +| .++.+++|+.|+
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLY 121 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEE
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEE
Confidence 3468899999999996 66 8999999999999999998 78887777 899999999999995 66 688899999999
Q ss_pred eecccCcccCch--hHHhcccCCcEEEccCCCC
Q 009515 502 LNNNLLEGRVPE--ELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 502 L~~N~l~g~lP~--~l~~l~~~L~~L~ls~N~l 532 (533)
|++|+++ .+|. .+..+.. |+.|++++|++
T Consensus 122 l~~N~i~-~~~~~~~l~~l~~-L~~L~l~~N~l 152 (198)
T 1ds9_A 122 MSNNKIT-NWGEIDKLAALDK-LEDLLLAGNPL 152 (198)
T ss_dssp ESEEECC-CHHHHHHHTTTTT-CSEEEECSCHH
T ss_pred CCCCcCC-chhHHHHHhcCCC-CCEEEecCCcc
Confidence 9999998 5554 6777666 99999999975
No 126
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.91 E-value=2.4e-09 Score=104.36 Aligned_cols=103 Identities=18% Similarity=0.207 Sum_probs=87.5
Q ss_pred ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
.+..|+.|+|++|.+++..+ +..+++|+.|++++|+++ .+|.... ++|+.|+|++|++++ +| .+..+++|+.|+
T Consensus 61 ~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGIPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILS 134 (263)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS-CCTTCCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC-CcCcccc-CcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence 34568999999999996544 999999999999999998 4665433 899999999999995 54 589999999999
Q ss_pred eecccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
|++|+++ .+| .+..+.. |+.|++++|++.
T Consensus 135 Ls~N~i~-~~~-~l~~l~~-L~~L~L~~N~i~ 163 (263)
T 1xeu_A 135 IRNNKLK-SIV-MLGFLSK-LEVLDLHGNEIT 163 (263)
T ss_dssp CTTSCCC-BCG-GGGGCTT-CCEEECTTSCCC
T ss_pred CCCCcCC-CCh-HHccCCC-CCEEECCCCcCc
Confidence 9999999 566 5777766 999999999874
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.91 E-value=1.4e-09 Score=110.49 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=86.2
Q ss_pred CCCC-CCCCCcceeecCCCCCc-----eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCcc-CC-CCc
Q 009515 402 CAPT-NWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSL 473 (533)
Q Consensus 402 c~~~-~~~~w~gv~c~~~~~~~-----~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l-~~-~~L 473 (533)
|.+. +.|.+..|.|...+... +..++.|+|++|+|+...+..|.+|++|+.|+|++|++.+.+|... .. ++|
T Consensus 2 Cp~~~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 2 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp CCCSSSEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred CCCCccEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 5433 44888999998654322 2458999999999996556679999999999999999987888654 45 665
Q ss_pred c-EEEccCCccccCCCccCCCCcCCCEEEeecccCcc
Q 009515 474 V-RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG 509 (533)
Q Consensus 474 ~-~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g 509 (533)
. .+.++.|++++..|..+..+++|+.|++++|++++
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred hhhhcccCCcccccCchhhhhcccccccccccccccc
Confidence 5 56778899997778889999999999999999883
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.89 E-value=2.7e-11 Score=112.89 Aligned_cols=103 Identities=24% Similarity=0.283 Sum_probs=82.0
Q ss_pred ceeEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCccccCCC--ccCCCCcCCC
Q 009515 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP--DSLTSSSKLQ 498 (533)
Q Consensus 422 ~~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~l~g~iP--~~~~~l~~L~ 498 (533)
.+..|+.|+|++|.++ .+|..+..+++|+.|++++|++++ +| .+.. ++|+.|+|++|++++ +| ..+..+++|+
T Consensus 68 ~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 68 GMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLE 143 (198)
T ss_dssp HHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCS
T ss_pred cCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCC
Confidence 3456888999999988 678888888999999999999985 55 5666 899999999999984 34 3688899999
Q ss_pred EEEeecccCcccCchh----------HHhcccCCcEEEccCCC
Q 009515 499 LVLLNNNLLEGRVPEE----------LYSIGVHGGAFEYVKTP 531 (533)
Q Consensus 499 ~L~L~~N~l~g~lP~~----------l~~l~~~L~~L~ls~N~ 531 (533)
.|++++|++++.+|.. +..+.. |+.|| +|+
T Consensus 144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~-L~~Ld--~~~ 183 (198)
T 1ds9_A 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPN-LKKLD--GMP 183 (198)
T ss_dssp EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSS-CSEEC--CGG
T ss_pred EEEecCCccccccccccchHHHHHHHHHhCCC-cEEEC--Ccc
Confidence 9999999998766642 666665 88887 444
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.88 E-value=5.8e-10 Score=114.82 Aligned_cols=109 Identities=26% Similarity=0.260 Sum_probs=83.9
Q ss_pred eEEEEEEeCCCCCc-cccc---hhhhccCCCCEEEccCCCCC--C---CCCCccCC-CCccEEEccCCccc----cCCCc
Q 009515 424 VVISQIDLGSQGLK-GYIS---DKISLLSNLVNLNLSTNSLG--G---TLPSGLGQ-QSLVRLDLSDNQFT----GSIPD 489 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~-g~~p---~~l~~L~~L~~L~Ls~N~l~--g---~iP~~l~~-~~L~~L~Ls~N~l~----g~iP~ 489 (533)
+.|+.|+|++|++. +.++ ..+..+++|+.|++++|.++ | .+|..+.. ++|+.|+|++|+++ +.+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 46888888888887 4445 46778888899999988887 3 34446666 88999999999886 67888
Q ss_pred cCCCCcCCCEEEeecccCccc----CchhHHh--cccCCcEEEccCCCCC
Q 009515 490 SLTSSSKLQLVLLNNNLLEGR----VPEELYS--IGVHGGAFEYVKTPNC 533 (533)
Q Consensus 490 ~~~~l~~L~~L~L~~N~l~g~----lP~~l~~--l~~~L~~L~ls~N~l~ 533 (533)
.+..+++|+.|+|++|++++. +|..+.. +.. |+.|+|++|++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~-L~~L~L~~n~i~ 287 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIE 287 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCC-CCEEECCSSCCB
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCC-eEEEECcCCcCC
Confidence 888888999999999988865 4565533 554 889999998863
No 130
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=3.2e-09 Score=107.54 Aligned_cols=101 Identities=23% Similarity=0.239 Sum_probs=85.7
Q ss_pred CCCCcceeecCC-CC------CceeEEEEEEeCC-CCCccccchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEE
Q 009515 407 WDAWEGITCHPN-KD------ETAVVISQIDLGS-QGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLD 477 (533)
Q Consensus 407 ~~~w~gv~c~~~-~~------~~~~~L~~L~Ls~-n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~ 477 (533)
.|.|..+.|... .. ..+..|+.|+|++ |.|++..+..|.+|++|+.|+|++|+|++..|..+.. ++|+.|+
T Consensus 7 ~C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred cccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence 478889999765 32 3345689999996 9999888899999999999999999999888888888 9999999
Q ss_pred ccCCccccCCCccCCCCcCCCEEEeecccCc
Q 009515 478 LSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508 (533)
Q Consensus 478 Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~ 508 (533)
|++|+|++..|..+..++ |+.|+|.+|.+.
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 999999955444555555 999999999998
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.82 E-value=4.8e-09 Score=114.65 Aligned_cols=94 Identities=20% Similarity=0.238 Sum_probs=68.7
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
..|+.|+|++|.+++ +|.. +++|+.|++++|.++ .+|..+ ++|+.|+|++|++++ +| ..+++|+.|+|+
T Consensus 181 ~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~~--~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls 249 (622)
T 3g06_A 181 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP--SGLKELIVSGNRLTS-LP---VLPSELKELMVS 249 (622)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCCC--TTCCEEECCSSCCSC-CC---CCCTTCCEEECC
T ss_pred CCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCCC--CCCCEEEccCCccCc-CC---CCCCcCcEEECC
Confidence 346677777777764 3332 466777777777776 555322 778999999999984 77 456789999999
Q ss_pred cccCcccCchhHHhcccCCcEEEccCCCCC
Q 009515 504 NNLLEGRVPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 504 ~N~l~g~lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
+|+++ .+|. .+. +|+.|+|++|+|.
T Consensus 250 ~N~L~-~lp~---~~~-~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 250 GNRLT-SLPM---LPS-GLLSLSVYRNQLT 274 (622)
T ss_dssp SSCCS-CCCC---CCT-TCCEEECCSSCCC
T ss_pred CCCCC-cCCc---ccc-cCcEEeCCCCCCC
Confidence 99998 7887 333 4899999999874
No 132
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.70 E-value=1.6e-09 Score=109.04 Aligned_cols=108 Identities=20% Similarity=0.183 Sum_probs=77.7
Q ss_pred eeEEEEEEeCCCCCccccchhhhccCCCCEEEccCC-CCCCC-CCCccCC-CCccEEEccCC-ccccC-CCccCCCCc-C
Q 009515 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTN-SLGGT-LPSGLGQ-QSLVRLDLSDN-QFTGS-IPDSLTSSS-K 496 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N-~l~g~-iP~~l~~-~~L~~L~Ls~N-~l~g~-iP~~~~~l~-~ 496 (533)
++.|+.|+|++|.+++..+..+..+++|+.|++++| .+++. ++..+.. ++|+.|+|++| ++++. +|..+..++ +
T Consensus 117 ~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 117 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred CCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 446777888888777777777777888888888887 56642 5555555 77888888888 77754 566677777 8
Q ss_pred CCEEEeecc--cCc-ccCchhHHhcccCCcEEEccCCC
Q 009515 497 LQLVLLNNN--LLE-GRVPEELYSIGVHGGAFEYVKTP 531 (533)
Q Consensus 497 L~~L~L~~N--~l~-g~lP~~l~~l~~~L~~L~ls~N~ 531 (533)
|+.|+|++| .++ +.+|..+..+.. |+.|++++|.
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~-L~~L~l~~~~ 233 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPN-LVHLDLSDSV 233 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTT-CSEEECTTCT
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCC-CCEEeCCCCC
Confidence 888888887 454 466776666665 8888888876
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.68 E-value=1.9e-09 Score=109.53 Aligned_cols=99 Identities=17% Similarity=0.192 Sum_probs=61.1
Q ss_pred EEEEEeCC-CCCccccchhhhccC-CCCEEEccCCCCCCCCCCccCC-CCccEEEccC-CccccCCCc-cCCCCcCCCEE
Q 009515 426 ISQIDLGS-QGLKGYISDKISLLS-NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSD-NQFTGSIPD-SLTSSSKLQLV 500 (533)
Q Consensus 426 L~~L~Ls~-n~l~g~~p~~l~~L~-~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~-N~l~g~iP~-~~~~l~~L~~L 500 (533)
+..|++.+ +.+....+..+..+. .|+.|++++|+++ .+|..... .+|+.|++++ |+++ .+|. .|.++++|+.|
T Consensus 130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVIL 207 (350)
T ss_dssp CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEE
T ss_pred hhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchh
Confidence 45566644 455544444555553 5777788888877 66666656 7777777765 4444 6664 46777788888
Q ss_pred EeecccCcccCchhHHhcccCCcEEEccCC
Q 009515 501 LLNNNLLEGRVPEELYSIGVHGGAFEYVKT 530 (533)
Q Consensus 501 ~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N 530 (533)
+|++|+++ .+|..... +|+.|.+.++
T Consensus 208 dLs~N~l~-~lp~~~~~---~L~~L~~l~~ 233 (350)
T 4ay9_X 208 DISRTRIH-SLPSYGLE---NLKKLRARST 233 (350)
T ss_dssp ECTTSCCC-CCCSSSCT---TCCEEECTTC
T ss_pred hcCCCCcC-ccChhhhc---cchHhhhccC
Confidence 88888877 67764322 2555554433
No 134
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.67 E-value=3.4e-09 Score=106.52 Aligned_cols=109 Identities=21% Similarity=0.230 Sum_probs=90.9
Q ss_pred eeEEEEEEeCCCCCccc-cchhhhccCCCCEEEccCCCCCCCCCCccCC-CCccEEEccCC-ccccC-CCccCCCCcCCC
Q 009515 423 AVVISQIDLGSQGLKGY-ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN-QFTGS-IPDSLTSSSKLQ 498 (533)
Q Consensus 423 ~~~L~~L~Ls~n~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N-~l~g~-iP~~~~~l~~L~ 498 (533)
+..|+.|+|++|.+.+. ++..+..+++|+.|++++|.+++..|..+.. ++|+.|+|++| .+++. +|..+.++++|+
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~ 171 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence 45688999999998866 8888889999999999999998888888888 99999999999 67763 677788889999
Q ss_pred EEEeecc-cCccc-CchhHHhcccCCcEEEccCCC
Q 009515 499 LVLLNNN-LLEGR-VPEELYSIGVHGGAFEYVKTP 531 (533)
Q Consensus 499 ~L~L~~N-~l~g~-lP~~l~~l~~~L~~L~ls~N~ 531 (533)
+|++++| .+++. +|..+..+..+|+.|++++|.
T Consensus 172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~ 206 (336)
T 2ast_B 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 206 (336)
T ss_dssp EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence 9999999 88854 677777777239999999983
No 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.67 E-value=6.1e-09 Score=106.29 Aligned_cols=108 Identities=20% Similarity=0.212 Sum_probs=83.7
Q ss_pred EEEEEEeCCCCCccccchhhhcc-----CCCCEEEccCCCCCCCCCCccCC------CCccEEEccCCccccCCCccCC-
Q 009515 425 VISQIDLGSQGLKGYISDKISLL-----SNLVNLNLSTNSLGGTLPSGLGQ------QSLVRLDLSDNQFTGSIPDSLT- 492 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~iP~~l~~------~~L~~L~Ls~N~l~g~iP~~~~- 492 (533)
.|+.|+|++|.+.+..+..+..+ ++|+.|+|++|.+++..+..+.. ++|+.|+|++|++++..+..+.
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 58899999999998878777776 89999999999998666654332 5899999999999876665443
Q ss_pred ---C-CcCCCEEEeecccCcccC----chhHHhcccCCcEEEccCCCC
Q 009515 493 ---S-SSKLQLVLLNNNLLEGRV----PEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 493 ---~-l~~L~~L~L~~N~l~g~l----P~~l~~l~~~L~~L~ls~N~l 532 (533)
. .++|++|+|++|+++..- +..+.....+|+.|+|++|++
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 3 368999999999998533 444455543599999999986
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.62 E-value=1.2e-08 Score=104.07 Aligned_cols=108 Identities=20% Similarity=0.190 Sum_probs=88.7
Q ss_pred EEEEEEeCCCCCccccc----hhhhccC-CCCEEEccCCCCCCCCCCccCC------CCccEEEccCCccccCCCccCCC
Q 009515 425 VISQIDLGSQGLKGYIS----DKISLLS-NLVNLNLSTNSLGGTLPSGLGQ------QSLVRLDLSDNQFTGSIPDSLTS 493 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p----~~l~~L~-~L~~L~Ls~N~l~g~iP~~l~~------~~L~~L~Ls~N~l~g~iP~~~~~ 493 (533)
.|+.|+|++|.+++..+ ..+..++ +|+.|+|++|.+++..+..+.. ++|+.|+|++|++++..+..+..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 48899999999997776 7788888 8999999999999776665554 68999999999999877765444
Q ss_pred ----C-cCCCEEEeecccCcccCchhHHhc----ccCCcEEEccCCCC
Q 009515 494 ----S-SKLQLVLLNNNLLEGRVPEELYSI----GVHGGAFEYVKTPN 532 (533)
Q Consensus 494 ----l-~~L~~L~L~~N~l~g~lP~~l~~l----~~~L~~L~ls~N~l 532 (533)
+ ++|+.|+|++|++++..+..+... ..+|+.|+|++|++
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 4 899999999999996666565543 33599999999986
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.46 E-value=1.4e-08 Score=106.72 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=62.2
Q ss_pred EEEEEEeCCCCCccccchhhhcc-----CCCCEEEccCCCCCCC----CCCccCC-CCccEEEccCCccccCCCccCCC-
Q 009515 425 VISQIDLGSQGLKGYISDKISLL-----SNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS- 493 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L-----~~L~~L~Ls~N~l~g~----iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~- 493 (533)
.|+.|+|++|.+....+..+... ++|+.|++++|.+++. ++..+.. ++|+.|+|++|++++..+..+..
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~ 364 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 364 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHH
T ss_pred CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHH
Confidence 35566666666654433333322 4666666666666543 3444444 66777777777666543333322
Q ss_pred ----CcCCCEEEeecccCcc----cCchhHHhcccCCcEEEccCCCC
Q 009515 494 ----SSKLQLVLLNNNLLEG----RVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 494 ----l~~L~~L~L~~N~l~g----~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+++|+.|+|++|++++ .+|..+..+.. |+.|++++|++
T Consensus 365 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~-L~~L~l~~N~i 410 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS-LRELDLSNNCL 410 (461)
T ss_dssp HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC-CCEEECCSSSC
T ss_pred HcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC-ccEEECCCCCC
Confidence 4567777777777664 56666666554 77777777765
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.37 E-value=4e-08 Score=103.10 Aligned_cols=110 Identities=19% Similarity=0.133 Sum_probs=88.0
Q ss_pred eEEEEEEeCCCCCccc----cchhhhccCCCCEEEccCCCCCCCCCCcc----CC--CCccEEEccCCccccC----CCc
Q 009515 424 VVISQIDLGSQGLKGY----ISDKISLLSNLVNLNLSTNSLGGTLPSGL----GQ--QSLVRLDLSDNQFTGS----IPD 489 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~----~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l----~~--~~L~~L~Ls~N~l~g~----iP~ 489 (533)
..|+.|+|++|.++.. ++..+..+++|+.|++++|.+++..+..+ .. ++|+.|+|++|++++. +|.
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 335 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 335 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH
Confidence 4588999999999864 67888889999999999999875433333 22 5899999999999875 566
Q ss_pred cCCCCcCCCEEEeecccCcccCchhHHhc----ccCCcEEEccCCCCC
Q 009515 490 SLTSSSKLQLVLLNNNLLEGRVPEELYSI----GVHGGAFEYVKTPNC 533 (533)
Q Consensus 490 ~~~~l~~L~~L~L~~N~l~g~lP~~l~~l----~~~L~~L~ls~N~l~ 533 (533)
.+..+++|+.|+|++|++++..+..+... ...|+.|++++|++.
T Consensus 336 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 336 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383 (461)
T ss_dssp HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence 77788999999999999986666666542 224999999999874
No 139
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=2.8e-07 Score=89.54 Aligned_cols=81 Identities=23% Similarity=0.202 Sum_probs=62.0
Q ss_pred hhccCCCCEEEccCCCCCC--CCCCccCC-CCccEEEccCCccccCCCccCCCCc--CCCEEEeecccCcccCch-----
Q 009515 444 ISLLSNLVNLNLSTNSLGG--TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS--KLQLVLLNNNLLEGRVPE----- 513 (533)
Q Consensus 444 l~~L~~L~~L~Ls~N~l~g--~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~--~L~~L~L~~N~l~g~lP~----- 513 (533)
..++++|+.|+|++|++++ .+|..+.. ++|+.|+|++|++++. +.+..+. +|+.|+|++|.+++.+|.
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 3578899999999999997 55666666 9999999999999964 3344444 899999999999987773
Q ss_pred --hHHhcccCCcEEEc
Q 009515 514 --ELYSIGVHGGAFEY 527 (533)
Q Consensus 514 --~l~~l~~~L~~L~l 527 (533)
.+..+++ |+.||-
T Consensus 244 ~~il~~~P~-L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPK-LLRLDG 258 (267)
T ss_dssp HHHHHHCTT-CCEESS
T ss_pred HHHHHHCcc-cCeECC
Confidence 2455555 888863
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.26 E-value=2.1e-07 Score=95.38 Aligned_cols=107 Identities=16% Similarity=0.124 Sum_probs=66.4
Q ss_pred EEEEEEeCCCCCccccchhhh-----ccCCCCEEEccCCCCCCC----CCCccCC-CCccEEEccCCccccC----CCcc
Q 009515 425 VISQIDLGSQGLKGYISDKIS-----LLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDS 490 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~-----~L~~L~~L~Ls~N~l~g~----iP~~l~~-~~L~~L~Ls~N~l~g~----iP~~ 490 (533)
.|+.|+|++|.++......+. ..++|+.|+|++|.++.. ++..+.. ++|+.|+|++|++... ++..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 367777777777644333332 346677778877777531 3333344 6777788877777642 2445
Q ss_pred CCCCcCCCEEEeecccCccc----CchhHHhcccCCcEEEccCCCC
Q 009515 491 LTSSSKLQLVLLNNNLLEGR----VPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 491 ~~~l~~L~~L~L~~N~l~g~----lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+..+++|+.|+|++|.++.. ++..+..... |+.|+|++|+|
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~-L~~L~Ls~N~i 251 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPS-LELLHLYFNEL 251 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSS-CCEEECTTSSC
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCC-CCEEeccCCCC
Confidence 55666777788887777632 3333444444 77788877775
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.02 E-value=8.5e-07 Score=96.06 Aligned_cols=109 Identities=9% Similarity=-0.000 Sum_probs=78.5
Q ss_pred eEEEEEEeC----CCCCccc-----cchhhhccCCCCEEEccCC--CCCCCCCCccCC--CCccEEEccCCcccc-CCCc
Q 009515 424 VVISQIDLG----SQGLKGY-----ISDKISLLSNLVNLNLSTN--SLGGTLPSGLGQ--QSLVRLDLSDNQFTG-SIPD 489 (533)
Q Consensus 424 ~~L~~L~Ls----~n~l~g~-----~p~~l~~L~~L~~L~Ls~N--~l~g~iP~~l~~--~~L~~L~Ls~N~l~g-~iP~ 489 (533)
+.|+.|+++ .|.+++. ++..+..+++|+.|+++.+ .+++..+..+.. ++|+.|+|++|++++ .++.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence 347777774 6677653 4445677888888888743 366555555544 789999999999886 3555
Q ss_pred cCCCCcCCCEEEeecccCcccC-chhHHhcccCCcEEEccCCCCC
Q 009515 490 SLTSSSKLQLVLLNNNLLEGRV-PEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 490 ~~~~l~~L~~L~L~~N~l~g~l-P~~l~~l~~~L~~L~ls~N~l~ 533 (533)
.+..+++|+.|+|++|.+++.. +..+..+.. |+.|++++|++.
T Consensus 483 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~ls~n~it 526 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS-LRYLWVQGYRAS 526 (592)
T ss_dssp HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS-CCEEEEESCBCC
T ss_pred HHhcCcccCeeeccCCCCcHHHHHHHHHhcCc-cCeeECcCCcCC
Confidence 6678899999999999987553 444455554 999999999863
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.02 E-value=5.2e-07 Score=92.39 Aligned_cols=109 Identities=17% Similarity=0.165 Sum_probs=82.2
Q ss_pred eEEEEEEeCCCCCccccchhh-hccCCCCEEEccCCCCCCCCCCcc-----CC-CCccEEEccCCcccc----CCCccCC
Q 009515 424 VVISQIDLGSQGLKGYISDKI-SLLSNLVNLNLSTNSLGGTLPSGL-----GQ-QSLVRLDLSDNQFTG----SIPDSLT 492 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l-~~L~~L~~L~Ls~N~l~g~iP~~l-----~~-~~L~~L~Ls~N~l~g----~iP~~~~ 492 (533)
..|+.|+|++|.+...-...+ ..+.+|+.|+|++|.++..-...+ .. .+|+.|+|++|+++. .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 359999999999975433333 356789999999999974433333 23 789999999999974 2445557
Q ss_pred CCcCCCEEEeecccCccc----CchhHHhcccCCcEEEccCCCCC
Q 009515 493 SSSKLQLVLLNNNLLEGR----VPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 493 ~l~~L~~L~L~~N~l~g~----lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
.+++|++|+|++|.+... ++..+..... |+.|+|++|.|.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~-L~~L~Ls~N~i~ 224 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ-LQELNVAYNGAG 224 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC-CCEEECCSSCCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC-cCeEECCCCCCC
Confidence 789999999999999742 3455556554 999999999873
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=9.2e-07 Score=81.17 Aligned_cols=107 Identities=15% Similarity=0.193 Sum_probs=80.4
Q ss_pred EEEEEEeCCC-CCcc----ccchhhhccCCCCEEEccCCCCCCC----CCCccCC-CCccEEEccCCccccC----CCcc
Q 009515 425 VISQIDLGSQ-GLKG----YISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDS 490 (533)
Q Consensus 425 ~L~~L~Ls~n-~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~----iP~~l~~-~~L~~L~Ls~N~l~g~----iP~~ 490 (533)
.|+.|+|++| .+.. .+...+...++|++|+|++|.+... +...+.. ++|+.|+|++|++... +.+.
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 3788999999 8864 2455667778999999999998732 2333444 7899999999998853 4556
Q ss_pred CCCCcCCCEEEe--ecccCccc----CchhHHhcccCCcEEEccCCCC
Q 009515 491 LTSSSKLQLVLL--NNNLLEGR----VPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 491 ~~~l~~L~~L~L--~~N~l~g~----lP~~l~~l~~~L~~L~ls~N~l 532 (533)
+...+.|++|+| ++|.+... +...+..... |+.|+|++|.+
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~-L~~L~L~~n~i 163 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTT-LLKFGYHFTQQ 163 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSS-CCEEECCCSSH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCC-cCEEeccCCCC
Confidence 777789999999 88999743 3344444454 99999999975
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.93 E-value=4.1e-06 Score=81.32 Aligned_cols=76 Identities=25% Similarity=0.224 Sum_probs=63.7
Q ss_pred eEEEEEEeCCCCCcc--ccchhhhccCCCCEEEccCCCCCCCCCCccCC-C--CccEEEccCCccccCCCc-------cC
Q 009515 424 VVISQIDLGSQGLKG--YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q--SLVRLDLSDNQFTGSIPD-------SL 491 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g--~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~-~--~L~~L~Ls~N~l~g~iP~-------~~ 491 (533)
+.|+.|+|++|.|++ .+|..+..+++|+.|+|++|++++. ..+.. . +|+.|+|++|.+.+.+|. .+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 458999999999998 5678888999999999999999954 44555 4 899999999999988873 25
Q ss_pred CCCcCCCEEE
Q 009515 492 TSSSKLQLVL 501 (533)
Q Consensus 492 ~~l~~L~~L~ 501 (533)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 6788888875
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.73 E-value=3.2e-05 Score=77.40 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=79.2
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCcc-CC-CCcc-EEEccCCccccCCCccCCCCcCCCEEE
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLV-RLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l-~~-~~L~-~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
.|+.|+|++|+++......|.++++|+.|+|++| ++ .|++.. .. .+|+ .+++++ +++..-+..|.+|++|+.|+
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 4889999999999766778999999999999998 76 666654 44 8899 999998 77745567899999999999
Q ss_pred eecccCcccCchhHHhcccCCcEEEc
Q 009515 502 LNNNLLEGRVPEELYSIGVHGGAFEY 527 (533)
Q Consensus 502 L~~N~l~g~lP~~l~~l~~~L~~L~l 527 (533)
+.+|+++ .|+...+....+|+.|..
T Consensus 304 l~~n~i~-~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKIT-TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCC-EECTTTTCTTCCCCEEEC
T ss_pred eCCCccC-ccchhhhcCCcchhhhcc
Confidence 9999999 777654443334888764
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.66 E-value=3.4e-05 Score=83.33 Aligned_cols=100 Identities=15% Similarity=0.049 Sum_probs=51.8
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCC---CCCCCccCC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG---GTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~---g~iP~~l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
|+.|+|++|.+.+ ++..+..+++|+.|+++..... +..+..+.. ++|+.|+++++.. +.+|..+..+++|+.|+
T Consensus 222 L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 222 LVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLD 299 (592)
T ss_dssp CCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEE
T ss_pred CcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEe
Confidence 4445555544443 3444445555555555432221 122233344 5566666655432 35666666677777777
Q ss_pred eecccCcccCchh-HHhcccCCcEEEcc
Q 009515 502 LNNNLLEGRVPEE-LYSIGVHGGAFEYV 528 (533)
Q Consensus 502 L~~N~l~g~lP~~-l~~l~~~L~~L~ls 528 (533)
|++|.+++..... +..+.+ |+.|+++
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~-L~~L~L~ 326 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPN-LEVLETR 326 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTT-CCEEEEE
T ss_pred cCCCcCCHHHHHHHHHhCcC-CCEEecc
Confidence 7777765443323 344443 7777776
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.63 E-value=5.2e-06 Score=89.79 Aligned_cols=107 Identities=10% Similarity=0.011 Sum_probs=68.8
Q ss_pred eEEEEEEeC--C----CCCcc-----ccchhhhccCCCCEEEccCCCCCCCCCCccCC--CCccEEEccCCccccCCCcc
Q 009515 424 VVISQIDLG--S----QGLKG-----YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDS 490 (533)
Q Consensus 424 ~~L~~L~Ls--~----n~l~g-----~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~--~~L~~L~Ls~N~l~g~iP~~ 490 (533)
+.|+.|+|+ + +.++. .++..+..+++|+.|++++ .+++..+..+.. ++|+.|+|++|++++..+..
T Consensus 397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~ 475 (594)
T 2p1m_B 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH 475 (594)
T ss_dssp TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHH
T ss_pred CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHH
Confidence 346677777 3 44442 2223356677888888866 555444444444 77888888888877654444
Q ss_pred C-CCCcCCCEEEeecccCcccCchhHHh-cccCCcEEEccCCCC
Q 009515 491 L-TSSSKLQLVLLNNNLLEGRVPEELYS-IGVHGGAFEYVKTPN 532 (533)
Q Consensus 491 ~-~~l~~L~~L~L~~N~l~g~lP~~l~~-l~~~L~~L~ls~N~l 532 (533)
+ ..+++|+.|+|++|.+++..+..+.. +.. |+.|++++|++
T Consensus 476 l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~-L~~L~l~~~~~ 518 (594)
T 2p1m_B 476 VLSGCDSLRKLEIRDCPFGDKALLANASKLET-MRSLWMSSCSV 518 (594)
T ss_dssp HHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG-SSEEEEESSCC
T ss_pred HHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC-CCEEeeeCCCC
Confidence 4 55788888888888886444443333 444 88888888875
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.36 E-value=4.2e-05 Score=77.71 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=73.8
Q ss_pred eEEEEEEeCCCCCccccchhhh--ccCCCCEEEccC--CCCCCC-----CCCccC--C-CCccEEEccCCccccCCCccC
Q 009515 424 VVISQIDLGSQGLKGYISDKIS--LLSNLVNLNLST--NSLGGT-----LPSGLG--Q-QSLVRLDLSDNQFTGSIPDSL 491 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~--~L~~L~~L~Ls~--N~l~g~-----iP~~l~--~-~~L~~L~Ls~N~l~g~iP~~~ 491 (533)
++|+.|+|..+++.......+. .+++|+.|+|+. |...|. +...+. . ++|+.|+|.+|++....+..+
T Consensus 193 ~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~l 272 (362)
T 2ra8_A 193 PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMF 272 (362)
T ss_dssp TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHH
T ss_pred CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHH
Confidence 3478888888887655445555 789999999864 222221 111222 3 899999999998875443333
Q ss_pred ---CCCcCCCEEEeecccCccc----CchhHHhcccCCcEEEccCCCCC
Q 009515 492 ---TSSSKLQLVLLNNNLLEGR----VPEELYSIGVHGGAFEYVKTPNC 533 (533)
Q Consensus 492 ---~~l~~L~~L~L~~N~l~g~----lP~~l~~l~~~L~~L~ls~N~l~ 533 (533)
..+++|++|+|+.|.+.+. ++..+..+.. |+.|+|++|.+.
T Consensus 273 a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~-L~~L~L~~n~i~ 320 (362)
T 2ra8_A 273 LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH-LKFINMKYNYLS 320 (362)
T ss_dssp HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTT-CSEEECCSBBCC
T ss_pred HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCc-ceEEECCCCcCC
Confidence 3578999999999998753 3444444554 999999999763
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.34 E-value=3.3e-05 Score=83.39 Aligned_cols=105 Identities=17% Similarity=0.109 Sum_probs=57.6
Q ss_pred EEEEEEeCCC-CCccc-cchhhhccCCCCEEEccCCCCCCCCCCccC----C-CCccEEEccCCc--ccc-CCCccCCCC
Q 009515 425 VISQIDLGSQ-GLKGY-ISDKISLLSNLVNLNLSTNSLGGTLPSGLG----Q-QSLVRLDLSDNQ--FTG-SIPDSLTSS 494 (533)
Q Consensus 425 ~L~~L~Ls~n-~l~g~-~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~----~-~~L~~L~Ls~N~--l~g-~iP~~~~~l 494 (533)
.|+.|+|++| .++.. ++..+..+++|++|++++|.+++..+..+. . ++|+.|+|++|. +.. .++..+..+
T Consensus 131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~ 210 (594)
T 2p1m_B 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC 210 (594)
T ss_dssp TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence 4666777666 33322 334444667777777777776644333332 2 567777777665 111 011112345
Q ss_pred cCCCEEEeecccCcccCchhHHhcccCCcEEEccCC
Q 009515 495 SKLQLVLLNNNLLEGRVPEELYSIGVHGGAFEYVKT 530 (533)
Q Consensus 495 ~~L~~L~L~~N~l~g~lP~~l~~l~~~L~~L~ls~N 530 (533)
++|+.|+|++|...+.+|..+..+.. |+.|+++.+
T Consensus 211 ~~L~~L~L~~~~~~~~l~~~~~~~~~-L~~L~l~~~ 245 (594)
T 2p1m_B 211 PNLKSLKLNRAVPLEKLATLLQRAPQ-LEELGTGGY 245 (594)
T ss_dssp TTCCEEECCTTSCHHHHHHHHHHCTT-CSEEECSBC
T ss_pred CCCcEEecCCCCcHHHHHHHHhcCCc-ceEcccccc
Confidence 67777777766332246666666554 777776544
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.28 E-value=5e-05 Score=69.44 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=70.0
Q ss_pred ccchhhhccCCCCEEEccCC-CCCCC----CCCccCC-CCccEEEccCCccccC----CCccCCCCcCCCEEEeecccCc
Q 009515 439 YISDKISLLSNLVNLNLSTN-SLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLE 508 (533)
Q Consensus 439 ~~p~~l~~L~~L~~L~Ls~N-~l~g~----iP~~l~~-~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~L~~N~l~ 508 (533)
.+...+...++|+.|+|++| .+... +...+.. ++|++|+|++|++... +.+.+...+.|++|+|++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 45566778899999999999 88632 3344555 8899999999998742 3344556688999999999998
Q ss_pred cc----CchhHHhcccCCcEEEc--cCCCC
Q 009515 509 GR----VPEELYSIGVHGGAFEY--VKTPN 532 (533)
Q Consensus 509 g~----lP~~l~~l~~~L~~L~l--s~N~l 532 (533)
.. +...+..... |+.|+| ++|++
T Consensus 107 ~~g~~~l~~~L~~n~~-L~~L~L~~~~N~i 135 (185)
T 1io0_A 107 GSGILALVEALQSNTS-LIELRIDNQSQPL 135 (185)
T ss_dssp HHHHHHHHHGGGGCSS-CCEEECCCCSSCC
T ss_pred HHHHHHHHHHHHhCCC-ceEEEecCCCCCC
Confidence 43 3445555554 999999 88986
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.21 E-value=0.00032 Score=69.94 Aligned_cols=82 Identities=16% Similarity=0.141 Sum_probs=66.7
Q ss_pred ccCCCCEEEccCCCCCCCCCCccC-C-CCccEEEccCCccccCCCccCCCCcCCC-EEEeecccCcccCchh-HHhcccC
Q 009515 446 LLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ-LVLLNNNLLEGRVPEE-LYSIGVH 521 (533)
Q Consensus 446 ~L~~L~~L~Ls~N~l~g~iP~~l~-~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~-~L~L~~N~l~g~lP~~-l~~l~~~ 521 (533)
.+++|+.|+|++|+++ .||.... . .+|+.++|++| ++..-+..|.+|.+|+ .+++.+ .++ .|++. +..+..
T Consensus 224 ~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~- 298 (329)
T 3sb4_A 224 YMPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDN- 298 (329)
T ss_dssp HCTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTT-
T ss_pred hcCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCcc-
Confidence 4889999999999998 7777644 4 89999999998 7744456799999999 999998 777 67655 555555
Q ss_pred CcEEEccCCCC
Q 009515 522 GGAFEYVKTPN 532 (533)
Q Consensus 522 L~~L~ls~N~l 532 (533)
|+.|++++|++
T Consensus 299 L~~l~l~~n~i 309 (329)
T 3sb4_A 299 LRYVLATGDKI 309 (329)
T ss_dssp EEEEEECSSCC
T ss_pred CCEEEeCCCcc
Confidence 99999988875
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.64 E-value=0.001 Score=67.39 Aligned_cols=106 Identities=11% Similarity=0.066 Sum_probs=71.6
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccC--C-CCccEEEccC--CccccC-----CCccC--
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG--Q-QSLVRLDLSD--NQFTGS-----IPDSL-- 491 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~--~-~~L~~L~Ls~--N~l~g~-----iP~~~-- 491 (533)
+.|+.|.|+++.-. .++. + .+++|+.|+|..+.++...-..+. . ++|+.|+|+. |...|. +-..+
T Consensus 172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 45888999887311 2333 3 388999999999887643333333 4 8999999863 332222 11122
Q ss_pred CCCcCCCEEEeecccCcccCchhHHh--cccCCcEEEccCCCC
Q 009515 492 TSSSKLQLVLLNNNLLEGRVPEELYS--IGVHGGAFEYVKTPN 532 (533)
Q Consensus 492 ~~l~~L~~L~L~~N~l~g~lP~~l~~--l~~~L~~L~ls~N~l 532 (533)
..+++|+.|+|.+|.+....+..+.. ...+|+.|+|+.|.|
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 35789999999999998666666654 223499999999986
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.37 E-value=0.0045 Score=52.83 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=44.6
Q ss_pred CEEEccCCCCC-CCCCCccCCCCccEEEccCCccccCCCccCCCCcCCCEEEeecccCc
Q 009515 451 VNLNLSTNSLG-GTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508 (533)
Q Consensus 451 ~~L~Ls~N~l~-g~iP~~l~~~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~ 508 (533)
..++.+++.|+ ..+|..+. .+|+.|+|++|+|+..-+..|..+++|+.|+|.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC-cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47899999986 46775433 67899999999999443445778899999999999774
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.18 E-value=0.0011 Score=59.68 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=60.2
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCC-CCCCCCCccCC-----CCccEEEccCCc-cccCCCccCCCCcCC
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-----QSLVRLDLSDNQ-FTGSIPDSLTSSSKL 497 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~-l~g~iP~~l~~-----~~L~~L~Ls~N~-l~g~iP~~~~~l~~L 497 (533)
.|+.|||+++.++..--..+..+++|+.|+|++|. ++..--..+.. ++|+.|+|+++. ++..-=..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 59999999999876555667899999999999985 55221111221 269999999975 653322356788999
Q ss_pred CEEEeeccc
Q 009515 498 QLVLLNNNL 506 (533)
Q Consensus 498 ~~L~L~~N~ 506 (533)
+.|+|+++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 999999875
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.18 E-value=0.0078 Score=51.33 Aligned_cols=54 Identities=28% Similarity=0.458 Sum_probs=41.6
Q ss_pred EEEeCCCCCc-cccchhhhccCCCCEEEccCCCCCCCCCCcc-CC-CCccEEEccCCccc
Q 009515 428 QIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFT 484 (533)
Q Consensus 428 ~L~Ls~n~l~-g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l-~~-~~L~~L~Ls~N~l~ 484 (533)
.++.++++|+ ..+|..+ -.+|+.|+|++|+|+ .+|... .. ++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 4777888886 3556543 247999999999999 677665 44 89999999999875
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.13 E-value=0.0022 Score=58.93 Aligned_cols=105 Identities=10% Similarity=0.109 Sum_probs=70.0
Q ss_pred EEEEEeCCC-CCcc----ccchhhhccCCCCEEEccCCCCCCCCCCc----cCC-CCccEEEccCCccccC----CCccC
Q 009515 426 ISQIDLGSQ-GLKG----YISDKISLLSNLVNLNLSTNSLGGTLPSG----LGQ-QSLVRLDLSDNQFTGS----IPDSL 491 (533)
Q Consensus 426 L~~L~Ls~n-~l~g----~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~----l~~-~~L~~L~Ls~N~l~g~----iP~~~ 491 (533)
|+.|+|++| ++.. .+.+.+..-+.|+.|+|++|.+...--.. +.. +.|+.|+|+.|++... +-+.+
T Consensus 43 L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL 122 (197)
T 1pgv_A 43 LKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRST 122 (197)
T ss_dssp CCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHT
T ss_pred ccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHH
Confidence 777888885 6652 24556666788999999999987332222 333 7899999999998743 22345
Q ss_pred CCCcCCCEEEeecc---cCcc----cCchhHHhcccCCcEEEccCCC
Q 009515 492 TSSSKLQLVLLNNN---LLEG----RVPEELYSIGVHGGAFEYVKTP 531 (533)
Q Consensus 492 ~~l~~L~~L~L~~N---~l~g----~lP~~l~~l~~~L~~L~ls~N~ 531 (533)
..-+.|+.|+|++| .+.. .+-..+..... |+.|+++.|.
T Consensus 123 ~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~t-L~~L~l~~~~ 168 (197)
T 1pgv_A 123 LVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENES-LLRVGISFAS 168 (197)
T ss_dssp TTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSS-CCEEECCCCC
T ss_pred hhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCC-cCeEeccCCC
Confidence 55667999999865 3332 23344544444 8889988774
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.97 E-value=0.012 Score=60.33 Aligned_cols=102 Identities=11% Similarity=0.119 Sum_probs=57.4
Q ss_pred eEEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCcc-CC-CCccEEEccCCccccCCCccCCCCcCCCEEE
Q 009515 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (533)
Q Consensus 424 ~~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l-~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~ 501 (533)
..|+.++|.+|+++......|. ..+|+.+.|..+ ++ .|+... .. .+|+.++|..| ++..-...|.+ .+|+.+.
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~ 254 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVK 254 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEE
T ss_pred ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEE
Confidence 3466667766666633333333 466777777643 54 444433 33 67777777664 34122234444 5677777
Q ss_pred eecccCcccCchhHHhcccCCcEEEccCCCC
Q 009515 502 LNNNLLEGRVPEELYSIGVHGGAFEYVKTPN 532 (533)
Q Consensus 502 L~~N~l~g~lP~~l~~l~~~L~~L~ls~N~l 532 (533)
| .|.++ .|+...+....+|+.+++.+|.+
T Consensus 255 l-p~~i~-~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 255 L-PNGVT-NIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp E-ETTCC-EECTTTTTTCTTCCEEEEESSCC
T ss_pred e-CCCcc-EEChhHhhCCCCCCEEEeCCccc
Confidence 7 34455 56554443333488888887754
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.96 E-value=0.01 Score=60.85 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=37.1
Q ss_pred EEEEEEeCCCCCc-----cccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCC
Q 009515 425 VISQIDLGSQGLK-----GYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKL 497 (533)
Q Consensus 425 ~L~~L~Ls~n~l~-----g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L 497 (533)
.|+.+.+.+|.+. ..-+..|.++++|+.++|. +.++ .|+.. +.. .+|+.+.|..| ++..-+..|.++ +|
T Consensus 272 ~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L 347 (401)
T 4fdw_A 272 ELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GI 347 (401)
T ss_dssp TCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CC
T ss_pred CCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CC
Confidence 3445555544433 2233445555555555555 2344 33333 222 55555555433 332223345555 55
Q ss_pred CEEEeecccCc
Q 009515 498 QLVLLNNNLLE 508 (533)
Q Consensus 498 ~~L~L~~N~l~ 508 (533)
+.+++.+|.+.
T Consensus 348 ~~l~l~~n~~~ 358 (401)
T 4fdw_A 348 KEVKVEGTTPP 358 (401)
T ss_dssp CEEEECCSSCC
T ss_pred CEEEEcCCCCc
Confidence 55555555554
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.79 E-value=0.0034 Score=56.51 Aligned_cols=83 Identities=6% Similarity=-0.018 Sum_probs=59.3
Q ss_pred CCCCEEEccCCCCCCCCCCccCC-CCccEEEccCCc-cccCCCccCCCC----cCCCEEEeeccc-CcccCchhHHhccc
Q 009515 448 SNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQ-FTGSIPDSLTSS----SKLQLVLLNNNL-LEGRVPEELYSIGV 520 (533)
Q Consensus 448 ~~L~~L~Ls~N~l~g~iP~~l~~-~~L~~L~Ls~N~-l~g~iP~~~~~l----~~L~~L~L~~N~-l~g~lP~~l~~l~~ 520 (533)
-.|+.||++++.++..--..+.. ++|+.|+|+++. ++..-=..+..+ ++|++|+|+++. ++-.-=..+.++.+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 47999999999987443344556 999999999985 553222234554 479999999975 76322344666655
Q ss_pred CCcEEEccCCC
Q 009515 521 HGGAFEYVKTP 531 (533)
Q Consensus 521 ~L~~L~ls~N~ 531 (533)
|+.|++++.+
T Consensus 141 -L~~L~L~~c~ 150 (176)
T 3e4g_A 141 -LKYLFLSDLP 150 (176)
T ss_dssp -CCEEEEESCT
T ss_pred -CCEEECCCCC
Confidence 9999999875
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.79 E-value=0.027 Score=51.59 Aligned_cols=90 Identities=13% Similarity=0.187 Sum_probs=61.5
Q ss_pred cchhhhccCCCCEEEccCC-CCCCC----CCCccCC-CCccEEEccCCccccC----CCccCCCCcCCCEEEeecccCcc
Q 009515 440 ISDKISLLSNLVNLNLSTN-SLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLEG 509 (533)
Q Consensus 440 ~p~~l~~L~~L~~L~Ls~N-~l~g~----iP~~l~~-~~L~~L~Ls~N~l~g~----iP~~~~~l~~L~~L~L~~N~l~g 509 (533)
+...+.+-+.|+.|+|++| .+... +-..+.. ..|+.|+|++|++... +-+.+..-+.|+.|+|+.|.+..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3344556678999999986 76521 2334555 8999999999999743 22233355789999999999974
Q ss_pred cCchhH----HhcccCCcEEEccCC
Q 009515 510 RVPEEL----YSIGVHGGAFEYVKT 530 (533)
Q Consensus 510 ~lP~~l----~~l~~~L~~L~ls~N 530 (533)
.--..+ .... .|+.|+|++|
T Consensus 113 ~Ga~ala~aL~~N~-tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQ-SIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTC-CCSEEECCCC
T ss_pred HHHHHHHHHHhhCC-ceeEEECCCC
Confidence 332333 2333 4999999865
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.40 E-value=0.37 Score=48.78 Aligned_cols=97 Identities=8% Similarity=0.163 Sum_probs=48.2
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCC-ccCCCCcCCCEEEe
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLL 502 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP-~~~~~l~~L~~L~L 502 (533)
|+.+.+. +.+...-...|.++.+|+.++|..+ ++ .|.+. +.. .+|+.+.|..+ ++ .|. ..|.+|.+|+.+++
T Consensus 290 L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 290 LQDIEFS-SRITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEY 364 (394)
T ss_dssp CCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEE
T ss_pred cccccCC-CcccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEE
Confidence 5555553 3344333455666777777777654 44 44433 334 67777777544 44 333 45667777777777
Q ss_pred ecccCcccCchhHHhcccCCcEEEccCCC
Q 009515 503 NNNLLEGRVPEELYSIGVHGGAFEYVKTP 531 (533)
Q Consensus 503 ~~N~l~g~lP~~l~~l~~~L~~L~ls~N~ 531 (533)
.+|.... ..+..+.. |+.|.+..|.
T Consensus 365 ~~~~~~~---~~~~~~~~-L~~i~i~~~~ 389 (394)
T 4gt6_A 365 SGSRSQW---NAISTDSG-LQNLPVAPGS 389 (394)
T ss_dssp SSCHHHH---HTCBCCCC-C---------
T ss_pred CCceeeh---hhhhccCC-CCEEEeCCCC
Confidence 7665431 22333333 6666666554
No 162
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=90.48 E-value=6.1 Score=33.59 Aligned_cols=93 Identities=13% Similarity=0.097 Sum_probs=55.3
Q ss_pred CCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEecCCeEEEEEee
Q 009515 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS 166 (533)
Q Consensus 87 ~~~~cY~l~~~~~~~ylvRl~F~~~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~~ 166 (533)
|..-.|++.+.+.|.|.|++.+.-+.. ..+.++|++||.........-.+..-........-+....+.=.|.|..
T Consensus 39 g~~v~~~V~v~~aG~Y~l~~ryan~~~----~~~~~~l~VNG~~~~~~v~~p~Tg~w~~w~~~~~~v~L~aG~ntI~l~~ 114 (144)
T 2w47_A 39 GGYIEWNVNAPSSGSYALIFRYANGTT----ANRPMRITVNGNIVKPSMDFVSTGAWTTWNEAGIVANLNQGNNVIRATA 114 (144)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCSS----SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCCC----CCeEEEEEECCeEeeeEEEecCCCCCCeeEEEEEEEEECCCccEEEEEE
Confidence 445588888878899999998875532 2578999999976422221111111111111222233455555555553
Q ss_pred c-CCCCceeeeEEEEEcC
Q 009515 167 F-ATDPPVIASLEVQQID 183 (533)
Q Consensus 167 ~-~~~~pfIs~iEl~~l~ 183 (533)
. +.+.|-|.-|+|.+.+
T Consensus 115 ~~~~g~~niD~i~v~~~~ 132 (144)
T 2w47_A 115 IASDGGPNVDYLKVFSAN 132 (144)
T ss_dssp CSTTCCCEEEEEEEEECT
T ss_pred eCCCCCEEEeEEEEEeCC
Confidence 2 3456999999998754
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.07 E-value=0.4 Score=48.07 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=44.6
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
|+.+.+.. .+...-...|.++++|+.+.+.++.++ .|++. +.. .+|+.+.|..+ ++-.-...|.+|.+|+.+.+.
T Consensus 265 l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 265 LKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred hccccccc-cceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 44555543 243333445667777777777777776 55443 334 77777777654 441223456677777777665
Q ss_pred cc
Q 009515 504 NN 505 (533)
Q Consensus 504 ~N 505 (533)
.+
T Consensus 342 ~~ 343 (379)
T 4h09_A 342 KS 343 (379)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.49 E-value=0.33 Score=49.12 Aligned_cols=98 Identities=14% Similarity=0.307 Sum_probs=65.5
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccC-C-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~-~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
|+.+.+..+-.. .-...+.++..|+.+.+. +.++ .|+.... . .+|+.+.|..+ ++-.-...|.+|.+|+.+.|.
T Consensus 267 L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 267 LASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIP 342 (394)
T ss_dssp CCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred ccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEEC
Confidence 555666544332 334567788889999886 4455 5665544 4 88999998765 442334568888999999986
Q ss_pred cccCcccCchhHH-hcccCCcEEEccCC
Q 009515 504 NNLLEGRVPEELY-SIGVHGGAFEYVKT 530 (533)
Q Consensus 504 ~N~l~g~lP~~l~-~l~~~L~~L~ls~N 530 (533)
.+ ++ .|....+ ++.. |+.+++.+|
T Consensus 343 ~s-v~-~I~~~aF~~C~~-L~~i~~~~~ 367 (394)
T 4gt6_A 343 SS-VT-KIPESAFSNCTA-LNNIEYSGS 367 (394)
T ss_dssp TT-CC-BCCGGGGTTCTT-CCEEEESSC
T ss_pred cc-cC-EEhHhHhhCCCC-CCEEEECCc
Confidence 54 66 6765544 4444 899988876
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=89.20 E-value=0.44 Score=48.17 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=55.0
Q ss_pred EEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCCCEEEee
Q 009515 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (533)
Q Consensus 426 L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~ 503 (533)
|+.+.+..+ ++..-...|.++++|+.++|..+ ++ .|... +.. .+|+.+.+..| ++-.-...|.+|.+|+.+++.
T Consensus 299 L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 299 LTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred ccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 555666443 44344456777888888888644 55 55443 444 78888888766 552334467788888888886
Q ss_pred cccCcccCchhHHhcccCCcE
Q 009515 504 NNLLEGRVPEELYSIGVHGGA 524 (533)
Q Consensus 504 ~N~l~g~lP~~l~~l~~~L~~ 524 (533)
.+ ++ .+...+.++.+ |+.
T Consensus 375 ~~-~~-~~~~~F~~c~~-L~~ 392 (394)
T 4fs7_A 375 KR-LE-QYRYDFEDTTK-FKW 392 (394)
T ss_dssp GG-GG-GGGGGBCTTCE-EEE
T ss_pred CC-CE-EhhheecCCCC-CcE
Confidence 54 33 33444444443 443
No 166
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=86.61 E-value=11 Score=31.01 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=51.0
Q ss_pred CCCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEecCCeEEEEEe
Q 009515 86 SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFY 165 (533)
Q Consensus 86 ~~~~~cY~l~~~~~~~ylvRl~F~~~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~ 165 (533)
.|..-.|++.+.+.|.|.|++++.-+. + ..+.++|++||.........-.+..-....-....+....+.=.|.|.
T Consensus 37 ~g~~v~~~V~v~~aG~Y~l~~rya~~~--~--~~~~~~l~VnG~~~~~~v~~p~tg~W~~w~~~~~~v~L~aG~ntI~l~ 112 (127)
T 2vzp_A 37 AGSSVEWTVTVPSAGTYDVVVRYANGT--T--TSRPLDFSVNGSISASGVAFGSTGTWPAWTTKTVRVTLAAGVNKIKAV 112 (127)
T ss_dssp TTCEEEEEEEESSSEEEEEEEEEECCS--S--SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred CCCEEEEEEEcCCCCEEEEEEEEEcCC--C--CCeEEEEEECCEEeeeEEEecCCCCCCceEEEEEEEEECCCceEEEEE
Confidence 344568998887889999999987653 1 357899999997643312211111101111112223345555455555
Q ss_pred ec-CCCCceeeeEEE
Q 009515 166 SF-ATDPPVIASLEV 179 (533)
Q Consensus 166 ~~-~~~~pfIs~iEl 179 (533)
.. +.+.|-|.-|+|
T Consensus 113 ~~~~~~~~niD~i~v 127 (127)
T 2vzp_A 113 ATTANGGPNVDKITL 127 (127)
T ss_dssp ECSTTCCCEEEEEEC
T ss_pred EeCCCCCeEEEEEEC
Confidence 43 345677777764
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=84.39 E-value=1 Score=45.44 Aligned_cols=83 Identities=16% Similarity=0.082 Sum_probs=60.2
Q ss_pred hhhhccCCCCEEEccCCCCCCCCCCc-cCC-CCccEEEccCCccccCCCccCCCCcCCCEEEeecccCcccCchhH-Hhc
Q 009515 442 DKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL-YSI 518 (533)
Q Consensus 442 ~~l~~L~~L~~L~Ls~N~l~g~iP~~-l~~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L~~N~l~g~lP~~l-~~l 518 (533)
..+..+.+|+.+.+..+ ++ .|++. +.. .+|+.++|..+ ++-.-...|.+|.+|+.+.+..| ++ .|+... ..+
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C 365 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGC 365 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTC
T ss_pred ccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCC
Confidence 45778889999999765 55 55554 445 89999999755 55233457889999999999877 66 666554 444
Q ss_pred ccCCcEEEccCC
Q 009515 519 GVHGGAFEYVKT 530 (533)
Q Consensus 519 ~~~L~~L~ls~N 530 (533)
.. |+.+++..|
T Consensus 366 ~~-L~~i~lp~~ 376 (394)
T 4fs7_A 366 IN-LKKVELPKR 376 (394)
T ss_dssp TT-CCEEEEEGG
T ss_pred CC-CCEEEECCC
Confidence 54 999988654
No 168
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=83.28 E-value=16 Score=30.96 Aligned_cols=92 Identities=11% Similarity=-0.021 Sum_probs=53.5
Q ss_pred CCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEecCCeEEEEEee
Q 009515 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS 166 (533)
Q Consensus 87 ~~~~cY~l~~~~~~~ylvRl~F~~~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~~ 166 (533)
|..-.|++.+.+.|.|.|++.+.-+.. ..+.++|++||...-. ...-.+..-....-..+-+....+.=.|.|..
T Consensus 38 G~~v~~~V~v~~aG~Y~l~~ryang~~----~~r~~~l~VNG~~~~~-v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~~ 112 (145)
T 2w3j_A 38 GASIVWSLSAASAKTYTAQIRFGNGGT----SARRATVVVNDSQIKT-LDFPTNSNWTQWQTVNVDIPLKAGTNSIKLVA 112 (145)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCSS----SCCCEEEEETTEEEEE-ECCCCCSCTTSCEEEEEEEEECSEEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEEEEEEECCCC----CCeEEEEEECCeEeeE-EEecCCCCCCeeEEEEEEEEECCCceEEEEEE
Confidence 444588888878899999998874432 2578999999976422 11111110011111122333455555555554
Q ss_pred c-CCCCceeeeEEEEEcC
Q 009515 167 F-ATDPPVIASLEVQQID 183 (533)
Q Consensus 167 ~-~~~~pfIs~iEl~~l~ 183 (533)
. +.+.|-|.-|+|.+.+
T Consensus 113 ~~~~g~~niD~i~v~~~~ 130 (145)
T 2w3j_A 113 ETADGLANIDSIRVTGNG 130 (145)
T ss_dssp CSTTCCCEEEEEEECSTT
T ss_pred ecCcCCEEEEEEEEEcCC
Confidence 3 3467999999986544
No 169
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=82.82 E-value=2.9 Score=41.58 Aligned_cols=100 Identities=17% Similarity=0.188 Sum_probs=70.8
Q ss_pred EEEEEEeCCCCCccccchhhhccCCCCEEEccCCCCCCCCCCccC-C-CCccEEEccCCccccCCCccCCCCcCCCEEEe
Q 009515 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (533)
Q Consensus 425 ~L~~L~Ls~n~l~g~~p~~l~~L~~L~~L~Ls~N~l~g~iP~~l~-~-~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~L~L 502 (533)
.|+.+.+..+ ++..-...+.++.+|+.+.+..+ +. .++.... . .+|+.+.+.++.++-.-...|.+|.+|+.+.|
T Consensus 241 ~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 241 ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred cceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 4666777654 55444566788899999999764 54 5665544 4 89999999998888334457889999999999
Q ss_pred ecccCcccCchhH-HhcccCCcEEEccCC
Q 009515 503 NNNLLEGRVPEEL-YSIGVHGGAFEYVKT 530 (533)
Q Consensus 503 ~~N~l~g~lP~~l-~~l~~~L~~L~ls~N 530 (533)
..+ ++ .|+... .++.. |+.+.+..+
T Consensus 318 p~~-l~-~I~~~aF~~C~~-L~~i~ip~~ 343 (379)
T 4h09_A 318 PTA-LK-TIQVYAFKNCKA-LSTISYPKS 343 (379)
T ss_dssp CTT-CC-EECTTTTTTCTT-CCCCCCCTT
T ss_pred Ccc-cc-EEHHHHhhCCCC-CCEEEECCc
Confidence 755 66 666554 44444 888877544
No 170
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=75.64 E-value=20 Score=30.13 Aligned_cols=91 Identities=14% Similarity=0.011 Sum_probs=50.7
Q ss_pred CCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEE-EeccCCCcccccCCceEEEEEEEecCCeEEEEEe
Q 009515 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLV-FSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFY 165 (533)
Q Consensus 87 ~~~~cY~l~~~~~~~ylvRl~F~~~nyd~~~~~~~Fdv~~~~~~~-l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~ 165 (533)
|..-.|++.+.+.|.|.|++++.-+.- ..+..+|++||... ......-.+..-........-+....+.=.|.|.
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~ryang~~----~~r~~~l~VNG~~~g~~~v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~ 113 (139)
T 2w87_A 38 GAAVVWAIDATSSGRRTLTIRYANGGT----ANRNGSLVINGGSNGNYTVSLPTTGAWTTWQTATIDVDLVQGNNIVQLS 113 (139)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCSS----SCCCEEEEETTTTTCEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCCC----CCceEEEEECCEEcceeEEEecCCCCCCccEEEEEEEEECCCceEEEEE
Confidence 334478888877899999998875431 24679999987532 0111111111001111122223335555455555
Q ss_pred ecC-CCCceeeeEEEEE
Q 009515 166 SFA-TDPPVIASLEVQQ 181 (533)
Q Consensus 166 ~~~-~~~pfIs~iEl~~ 181 (533)
... .+.|-|.-|+|.+
T Consensus 114 ~~~~~g~~niD~i~v~~ 130 (139)
T 2w87_A 114 ATTAEGLPNIDSLSVVG 130 (139)
T ss_dssp ESSTTCCCEEEEEEEES
T ss_pred EcCCCCCEEEEEEEEec
Confidence 443 4679999999864
No 171
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=73.40 E-value=19 Score=31.10 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=51.2
Q ss_pred cceE-eecCCCceEEEEEEeecCCC------CCCCCCCceEEEECCEEEEe-ccCCCcccccCCceEEEEEEEecCCeEE
Q 009515 90 NCYI-IPNLPPGRYYIRTFTVYDNY------DGKSHSPSFDVSVEGTLVFS-WRSPWPEGLARDGAYSDLFAFVKDGELD 161 (533)
Q Consensus 90 ~cY~-l~~~~~~~ylvRl~F~~~ny------d~~~~~~~Fdv~~~~~~~l~-~~~~~~~~~~~~~~~~e~i~~~~~~~l~ 161 (533)
-.|+ +.+.+.|.|.|++.|.-|.. ......+..+|.|||...-. .|. .+..-.......+.+....+.=.
T Consensus 49 vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~fp--~Tg~W~~~~~~tv~V~L~aG~Nt 126 (156)
T 2wz8_A 49 LQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHYFF--NTRGWNTYRTDIIDVYLNAGNNT 126 (156)
T ss_dssp EEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEEEC--CCSSTTCCEEEEEEEEECSEEEE
T ss_pred EEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEEeC--CCCCCCcceEEEEEEEECCCceE
Confidence 3666 77767899999999975532 11112578999998754111 121 11100111112223344666777
Q ss_pred EEEeec--CCCCceeeeEEEEEc
Q 009515 162 LCFYSF--ATDPPVIASLEVQQI 182 (533)
Q Consensus 162 v~~~~~--~~~~pfIs~iEl~~l 182 (533)
|.|.+. ....|-|-.|+|.+.
T Consensus 127 I~~~~~~~~~~~pdiD~i~v~~~ 149 (156)
T 2wz8_A 127 IRFYNGTSGSYAPNIDKIAIAAL 149 (156)
T ss_dssp EEEECCSTTCBCCEEEEEEEEC-
T ss_pred EEEEecCCCCCCcEEEEEEEecc
Confidence 888776 344688888888654
No 172
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=64.88 E-value=25 Score=28.78 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=31.5
Q ss_pred cceEEEEecCCCCcEEEEEEeeccccCcCCCceeEEEEEECCeec
Q 009515 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV 317 (533)
Q Consensus 273 ~~l~~~~~~~~~~~y~v~lhF~ei~~~~~~~~~R~F~I~ing~~l 317 (533)
..++|.+.+...+.|.+.++++.-. ...|.++|++||...
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~rya~~~-----~~~~~~~l~VnG~~~ 78 (127)
T 2vzp_A 39 SSVEWTVTVPSAGTYDVVVRYANGT-----TTSRPLDFSVNGSIS 78 (127)
T ss_dssp CEEEEEEEESSSEEEEEEEEEECCS-----SSCCCEEEEETTEEE
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCC-----CCCeEEEEEECCEEe
Confidence 4588888887789999999988632 236889999999854
No 173
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=63.48 E-value=31 Score=29.01 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=30.7
Q ss_pred cceEEEEecCCCCcEEEEEEeeccccCcCCCceeEEEEEECCee
Q 009515 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKN 316 (533)
Q Consensus 273 ~~l~~~~~~~~~~~y~v~lhF~ei~~~~~~~~~R~F~I~ing~~ 316 (533)
..++|.+.+...+.|.+.+.++.- ....|.++|+|||..
T Consensus 40 ~~v~~~V~v~~aG~Y~l~~ryan~-----~~~~~~~~l~VNG~~ 78 (144)
T 2w47_A 40 GYIEWNVNAPSSGSYALIFRYANG-----TTANRPMRITVNGNI 78 (144)
T ss_dssp CEEEEEEEESSSEEEEEEEEEECC-----SSSCCCEEEEETTEE
T ss_pred CEEEEEEECCCCcEEEEEEEEECC-----CCCCeEEEEEECCeE
Confidence 458888888778999999998852 124688999999985
No 174
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=61.79 E-value=65 Score=31.92 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=51.2
Q ss_pred cceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEeccCCCcccccCCceEEEEEEEecCCeEEEEEeecCC
Q 009515 90 NCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFAT 169 (533)
Q Consensus 90 ~cY~l~~~~~~~ylvRl~F~~~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~v~~~~~~~ 169 (533)
+.+.+.+ +.|.|.|.+.+--+ ..=.|...+...+. .. .......++.+.+.++.+.+.+.....
T Consensus 78 ~~f~v~~-~~g~Y~v~v~~g~~--------~~~~v~~e~~~~~~-----~~--~g~~~~~~~~v~~~~g~~~l~~~~~~~ 141 (375)
T 2o14_A 78 NTFNVDL-PNGLYEVKVTLGNT--------ARASVAAEGVFQVI-----NM--TGDGAEDTFQIPVTDGQLNLLVTEGKA 141 (375)
T ss_dssp CCEEEEC-CSEEEEEEEEESSC--------SEEEEEETTEEEEE-----EE--ESTTCEEEEEEEECSSEEEEEEEESST
T ss_pred eEEEEEc-CCCceEEEEEecCC--------cceEEEEcceEEEE-----ec--CCCcEEEEEEEEeeCCeEEEeeeeccC
Confidence 3445555 78999999988643 23345555543332 11 223345677788899999998775433
Q ss_pred C-CceeeeEEEEEcCC
Q 009515 170 D-PPVIASLEVQQIDP 184 (533)
Q Consensus 170 ~-~pfIs~iEl~~l~~ 184 (533)
+ .+++++||+.+.+.
T Consensus 142 g~~~~l~~i~v~~~~~ 157 (375)
T 2o14_A 142 GTAFTLSALKIKKLSD 157 (375)
T ss_dssp TSCCEEEEEEEEEEES
T ss_pred CCCcccceEEEeccCC
Confidence 3 57999999998764
No 175
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=60.35 E-value=29 Score=29.39 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=32.9
Q ss_pred cceEEEEecCCCCcEEEEEEeeccccCcCCCceeEEEEEECCeeccccc
Q 009515 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVD 321 (533)
Q Consensus 273 ~~l~~~~~~~~~~~y~v~lhF~ei~~~~~~~~~R~F~I~ing~~l~~~d 321 (533)
..++|.+.+...+.|.+.+.++.- ..+.|.++|++||.....+.
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~~~v~ 82 (145)
T 2w3j_A 39 ASIVWSLSAASAKTYTAQIRFGNG-----GTSARRATVVVNDSQIKTLD 82 (145)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTEEEEEEC
T ss_pred CEEEEEEECCCCeEEEEEEEEECC-----CCCCeEEEEEECCeEeeEEE
Confidence 458888888778999999998832 12468899999998654433
No 176
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=52.69 E-value=45 Score=27.92 Aligned_cols=40 Identities=10% Similarity=0.152 Sum_probs=30.9
Q ss_pred cceEEEEecCCCCcEEEEEEeeccccCcCCCceeEEEEEECCeec
Q 009515 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV 317 (533)
Q Consensus 273 ~~l~~~~~~~~~~~y~v~lhF~ei~~~~~~~~~R~F~I~ing~~l 317 (533)
..++|...+...+.|.+.++++.-. ...|..+|++||...
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~ryang~-----~~~r~~~l~VNG~~~ 78 (139)
T 2w87_A 39 AAVVWAIDATSSGRRTLTIRYANGG-----TANRNGSLVINGGSN 78 (139)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECCS-----SSCCCEEEEETTTTT
T ss_pred CEEEEEEECCCCcEEEEEEEEECCC-----CCCceEEEEECCEEc
Confidence 4588888887789999999987522 235889999999754
No 177
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=47.42 E-value=87 Score=26.75 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=32.6
Q ss_pred cceEEE-EecCCCCcEEEEEEeeccccCc-----CCCceeEEEEEECCeec
Q 009515 273 GAIQYN-LAVDAKLDYLIWFHFAEIDSSV-----TKAGQRVFDILVNDKNV 317 (533)
Q Consensus 273 ~~l~~~-~~~~~~~~y~v~lhF~ei~~~~-----~~~~~R~F~I~ing~~l 317 (533)
+.++|. ..++..+.|.+.++|+.-.... .....|...|+|||...
T Consensus 47 ~~vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~ 97 (156)
T 2wz8_A 47 NYLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPE 97 (156)
T ss_dssp SCEEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCC
T ss_pred CEEEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCcee
Confidence 468888 8887789999999998643100 01137999999999753
No 178
>2y7l_A NT_ALS9-2, agglutinin-like ALS9 protein; cell adhesion, adhesin, peptide binding protein; 1.49A {Candida albicans} PDB: 2y7m_A 2y7n_A 2y7o_A 2ylh_A
Probab=28.07 E-value=33 Score=33.02 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=42.1
Q ss_pred EEecCCeEEEEEeecCCCC-ceeeeEEEEEcCCCCccccCcCccceEEEEeeeccCCCCCCCCCcCCCCCCCcccccCC
Q 009515 153 AFVKDGELDLCFYSFATDP-PVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDA 230 (533)
Q Consensus 153 ~~~~~~~l~v~~~~~~~~~-pfIs~iEl~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~dD~~dR~W~~d~ 230 (533)
+.-.+..+.|+|.+.+.|. |||+++...+... ...+....++-|.+... .++++.+.|.+.+
T Consensus 237 ~tCss~~i~It~~niPaGYRpfvdal~~~~~~~----------~~~~~y~~~YtC~~~~~------~~~~~~~~w~~y~ 299 (312)
T 2y7l_A 237 KTCTSTSITVEFQNVPAGYRPFVDAYISAENID----------KYTLTYANEYTCENGNT------VVDPFTLTWWGYK 299 (312)
T ss_dssp EEECSSEEEEEECCBCTTEEEEEEEEEEESSTT----------EEEEEECCEEEETTSCE------EECCEEEEEECCC
T ss_pred cEEcCCEEEEEEccCCCCceEEEEEEEecCCCc----------eEEEEEEEEEEECCCce------eecceeEEecccc
Confidence 3467889999999998885 9999998654321 11233444556665431 2688899998765
Done!