Query 009518
Match_columns 533
No_of_seqs 542 out of 3013
Neff 8.7
Searched_HMMs 46136
Date Thu Mar 28 14:05:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.8 3.4E-20 7.4E-25 153.4 9.0 100 53-152 4-103 (103)
2 cd01802 AN1_N ubiquitin-like d 99.8 9.5E-20 2.1E-24 150.8 11.0 95 438-532 9-103 (103)
3 cd01793 Fubi Fubi ubiquitin-li 99.8 8E-19 1.7E-23 137.3 8.9 74 457-532 1-74 (74)
4 KOG0003 Ubiquitin/60s ribosoma 99.8 5E-20 1.1E-24 145.0 0.8 76 1-76 1-76 (128)
5 PTZ00044 ubiquitin; Provisiona 99.7 6.6E-18 1.4E-22 133.2 9.1 76 457-532 1-76 (76)
6 cd01810 ISG15_repeat2 ISG15 ub 99.7 1.1E-17 2.3E-22 131.0 8.7 74 459-532 1-74 (74)
7 KOG0004 Ubiquitin/40S ribosoma 99.7 1.8E-18 3.9E-23 147.6 4.0 76 1-76 1-76 (156)
8 cd01807 GDX_N ubiquitin-like d 99.7 1.5E-17 3.3E-22 130.2 7.3 73 1-73 1-73 (74)
9 cd01793 Fubi Fubi ubiquitin-li 99.7 2.2E-17 4.8E-22 129.2 7.6 74 1-76 1-74 (74)
10 cd01803 Ubiquitin Ubiquitin. U 99.7 3.7E-17 8.1E-22 129.0 9.0 76 457-532 1-76 (76)
11 cd01807 GDX_N ubiquitin-like d 99.7 3.7E-17 8.1E-22 128.0 8.6 73 457-529 1-73 (74)
12 cd01806 Nedd8 Nebb8-like ubiq 99.7 7.8E-17 1.7E-21 127.1 9.4 76 457-532 1-76 (76)
13 KOG0003 Ubiquitin/60s ribosoma 99.7 2.2E-18 4.9E-23 135.8 0.3 76 305-380 1-76 (128)
14 PTZ00044 ubiquitin; Provisiona 99.7 6.2E-17 1.3E-21 127.6 7.8 75 1-75 1-75 (76)
15 cd01804 midnolin_N Ubiquitin-l 99.7 1.6E-16 3.4E-21 125.4 8.9 77 456-533 1-77 (78)
16 cd01797 NIRF_N amino-terminal 99.7 9.8E-17 2.1E-21 126.1 7.3 74 1-74 1-76 (78)
17 cd01797 NIRF_N amino-terminal 99.7 2.4E-16 5.3E-21 123.9 8.2 74 457-530 1-76 (78)
18 cd01810 ISG15_repeat2 ISG15 ub 99.6 3.8E-16 8.2E-21 122.2 7.2 73 3-75 1-73 (74)
19 KOG0005 Ubiquitin-like protein 99.6 1.1E-16 2.4E-21 112.1 3.6 70 77-146 1-70 (70)
20 KOG0004 Ubiquitin/40S ribosoma 99.6 1.4E-16 3.1E-21 136.0 4.5 77 457-533 1-77 (156)
21 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 7.8E-16 1.7E-20 119.1 8.0 72 456-527 1-72 (73)
22 cd01791 Ubl5 UBL5 ubiquitin-li 99.6 5E-16 1.1E-20 120.2 6.6 71 77-147 2-72 (73)
23 cd01798 parkin_N amino-termina 99.6 1.1E-15 2.4E-20 118.2 7.9 70 459-528 1-70 (70)
24 cd01804 midnolin_N Ubiquitin-l 99.6 8.9E-16 1.9E-20 121.0 7.3 77 76-153 1-77 (78)
25 cd01806 Nedd8 Nebb8-like ubiq 99.6 2E-15 4.3E-20 119.1 8.0 75 1-75 1-75 (76)
26 cd01794 DC_UbP_C dendritic cel 99.6 7.8E-16 1.7E-20 118.4 5.5 68 80-147 2-69 (70)
27 cd01803 Ubiquitin Ubiquitin. U 99.6 1.9E-15 4.1E-20 119.1 7.8 75 1-75 1-75 (76)
28 cd01763 Sumo Small ubiquitin-r 99.6 5E-15 1.1E-19 119.4 9.8 79 454-532 9-87 (87)
29 KOG0005 Ubiquitin-like protein 99.6 5.8E-16 1.3E-20 108.5 3.7 70 1-70 1-70 (70)
30 cd01794 DC_UbP_C dendritic cel 99.6 2.8E-15 6.1E-20 115.3 7.8 68 460-527 2-69 (70)
31 cd01798 parkin_N amino-termina 99.6 1.8E-15 3.9E-20 117.1 6.7 69 307-375 1-69 (70)
32 cd01805 RAD23_N Ubiquitin-like 99.6 5.6E-15 1.2E-19 116.7 9.1 73 457-529 1-75 (77)
33 cd01800 SF3a120_C Ubiquitin-li 99.6 4.3E-15 9.4E-20 116.7 7.7 69 464-532 5-73 (76)
34 cd01809 Scythe_N Ubiquitin-lik 99.6 8.4E-15 1.8E-19 114.2 8.5 72 457-528 1-72 (72)
35 cd01805 RAD23_N Ubiquitin-like 99.6 5.1E-15 1.1E-19 117.0 7.1 73 77-149 1-75 (77)
36 cd01792 ISG15_repeat1 ISG15 ub 99.6 1.1E-14 2.4E-19 115.6 7.7 73 456-528 2-76 (80)
37 cd01808 hPLIC_N Ubiquitin-like 99.6 1.4E-14 3E-19 112.4 8.0 71 457-528 1-71 (71)
38 PF00240 ubiquitin: Ubiquitin 99.6 1.4E-14 3E-19 111.9 7.8 69 462-530 1-69 (69)
39 cd01792 ISG15_repeat1 ISG15 ub 99.5 8.6E-15 1.9E-19 116.2 6.5 74 76-149 2-77 (80)
40 cd01809 Scythe_N Ubiquitin-lik 99.5 1.5E-14 3.2E-19 112.8 7.2 72 1-72 1-72 (72)
41 cd01796 DDI1_N DNA damage indu 99.5 3E-14 6.6E-19 110.2 7.6 68 459-526 1-70 (71)
42 PF00240 ubiquitin: Ubiquitin 99.5 3E-14 6.6E-19 110.0 6.5 69 82-150 1-69 (69)
43 cd01796 DDI1_N DNA damage indu 99.5 3.9E-14 8.5E-19 109.6 6.5 68 307-374 1-70 (71)
44 cd01808 hPLIC_N Ubiquitin-like 99.5 5.3E-14 1.1E-18 109.1 6.9 71 1-72 1-71 (71)
45 cd01800 SF3a120_C Ubiquitin-li 99.5 5.7E-14 1.2E-18 110.4 5.3 69 84-152 5-73 (76)
46 cd01790 Herp_N Homocysteine-re 99.5 7.3E-14 1.6E-18 108.5 5.7 72 76-147 1-78 (79)
47 cd01812 BAG1_N Ubiquitin-like 99.4 2.6E-13 5.6E-18 105.4 7.3 70 457-527 1-70 (71)
48 cd01813 UBP_N UBP ubiquitin pr 99.4 2.4E-13 5.2E-18 105.7 6.7 69 381-450 1-72 (74)
49 cd01790 Herp_N Homocysteine-re 99.4 3.6E-13 7.8E-18 104.6 7.4 72 456-527 1-78 (79)
50 cd01813 UBP_N UBP ubiquitin pr 99.4 2.9E-13 6.2E-18 105.3 6.1 70 77-147 1-73 (74)
51 cd01812 BAG1_N Ubiquitin-like 99.4 3.7E-13 8.1E-18 104.5 6.2 70 77-147 1-70 (71)
52 cd01763 Sumo Small ubiquitin-r 99.4 8.6E-13 1.9E-17 106.4 8.1 76 1-76 12-87 (87)
53 smart00213 UBQ Ubiquitin homol 99.3 3.7E-12 8.1E-17 96.6 7.0 64 457-521 1-64 (64)
54 cd01799 Hoil1_N Ubiquitin-like 99.3 9.2E-12 2E-16 96.9 7.3 64 463-527 9-74 (75)
55 smart00213 UBQ Ubiquitin homol 99.3 5.9E-12 1.3E-16 95.5 5.6 64 77-141 1-64 (64)
56 cd01799 Hoil1_N Ubiquitin-like 99.3 8.6E-12 1.9E-16 97.1 6.5 69 2-71 2-74 (75)
57 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 5.1E-12 1.1E-16 96.7 5.1 53 475-527 19-74 (75)
58 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 5E-12 1.1E-16 96.7 4.6 53 171-223 19-74 (75)
59 TIGR00601 rad23 UV excision re 99.2 1.6E-11 3.4E-16 124.6 6.6 73 77-149 1-76 (378)
60 TIGR00601 rad23 UV excision re 99.2 4.4E-11 9.4E-16 121.4 8.6 72 457-528 1-75 (378)
61 cd01814 NTGP5 Ubiquitin-like N 99.2 1.9E-11 4.1E-16 99.8 4.1 75 76-150 4-92 (113)
62 cd01814 NTGP5 Ubiquitin-like N 99.2 2.4E-11 5.3E-16 99.2 4.1 73 2-74 6-92 (113)
63 cd01769 UBL Ubiquitin-like dom 99.1 4.1E-10 9E-15 86.6 7.8 67 461-527 2-68 (69)
64 PF11976 Rad60-SLD: Ubiquitin- 99.1 4.2E-10 9E-15 87.5 7.4 71 457-527 1-72 (72)
65 cd01795 USP48_C USP ubiquitin- 99.1 1.9E-10 4.1E-15 90.8 5.3 62 392-453 16-78 (107)
66 cd01795 USP48_C USP ubiquitin- 99.0 3.4E-10 7.4E-15 89.4 6.0 62 164-225 16-78 (107)
67 cd01769 UBL Ubiquitin-like dom 99.0 4.7E-10 1E-14 86.3 5.8 67 81-147 2-68 (69)
68 KOG0010 Ubiquitin-like protein 99.0 3.7E-10 8.1E-15 114.4 5.3 74 75-149 14-87 (493)
69 KOG0010 Ubiquitin-like protein 99.0 7E-10 1.5E-14 112.4 6.6 74 456-530 15-88 (493)
70 KOG0011 Nucleotide excision re 99.0 7.9E-10 1.7E-14 106.4 5.8 74 77-150 1-76 (340)
71 KOG0001 Ubiquitin and ubiquiti 98.9 4.9E-09 1.1E-13 81.4 7.8 73 2-74 1-73 (75)
72 PF11976 Rad60-SLD: Ubiquitin- 98.9 4.1E-09 8.9E-14 81.9 6.3 70 305-374 1-71 (72)
73 KOG0011 Nucleotide excision re 98.9 3.1E-09 6.7E-14 102.4 6.4 73 1-73 1-75 (340)
74 KOG0001 Ubiquitin and ubiquiti 98.9 2E-08 4.4E-13 77.8 9.5 74 459-532 2-75 (75)
75 cd01788 ElonginB Ubiquitin-lik 98.8 1.2E-08 2.7E-13 82.8 7.2 74 457-530 1-82 (119)
76 cd01789 Alp11_N Ubiquitin-like 98.8 2.2E-08 4.8E-13 80.0 8.7 69 458-526 3-79 (84)
77 PF14560 Ubiquitin_2: Ubiquiti 98.6 1.4E-07 3E-12 76.1 8.3 69 458-526 3-81 (87)
78 cd01789 Alp11_N Ubiquitin-like 98.6 9.5E-08 2.1E-12 76.3 7.0 70 78-147 3-80 (84)
79 PLN02560 enoyl-CoA reductase 98.5 2.6E-07 5.6E-12 91.8 7.8 70 457-526 1-81 (308)
80 cd01788 ElonginB Ubiquitin-lik 98.5 2.5E-07 5.5E-12 75.3 6.0 72 1-72 1-80 (119)
81 cd01811 OASL_repeat1 2'-5' oli 98.5 5.1E-07 1.1E-11 67.3 7.0 72 153-225 1-77 (80)
82 PLN02560 enoyl-CoA reductase 98.5 2.3E-07 5E-12 92.2 6.5 70 77-146 1-81 (308)
83 PF13881 Rad60-SLD_2: Ubiquiti 98.5 7.6E-07 1.6E-11 74.5 8.2 75 76-150 2-90 (111)
84 KOG1769 Ubiquitin-like protein 98.4 1.6E-06 3.5E-11 69.1 9.2 78 456-533 20-97 (99)
85 PF14560 Ubiquitin_2: Ubiquiti 98.4 9.3E-07 2E-11 71.3 7.1 70 78-147 3-82 (87)
86 cd01811 OASL_repeat1 2'-5' oli 98.4 8E-07 1.7E-11 66.3 6.0 70 77-147 1-75 (80)
87 PF11543 UN_NPL4: Nuclear pore 98.4 7.3E-07 1.6E-11 70.2 5.6 71 455-526 3-78 (80)
88 PF13881 Rad60-SLD_2: Ubiquiti 98.3 3.3E-06 7.2E-11 70.7 9.5 74 457-530 3-90 (111)
89 KOG4248 Ubiquitin-like protein 98.3 5.1E-07 1.1E-11 98.7 4.9 72 78-150 4-75 (1143)
90 KOG4248 Ubiquitin-like protein 98.3 1E-06 2.2E-11 96.5 5.8 73 307-380 5-77 (1143)
91 cd01801 Tsc13_N Ubiquitin-like 98.2 2.8E-06 6E-11 66.8 6.3 52 474-525 20-74 (77)
92 KOG1872 Ubiquitin-specific pro 98.2 1.8E-06 3.8E-11 87.5 6.1 70 381-451 4-74 (473)
93 cd01801 Tsc13_N Ubiquitin-like 98.1 3.9E-06 8.4E-11 65.9 5.1 52 94-145 20-74 (77)
94 cd00196 UBQ Ubiquitin-like pro 98.0 1.4E-05 3.1E-10 59.1 6.3 64 312-375 5-68 (69)
95 cd00196 UBQ Ubiquitin-like pro 98.0 2.7E-05 5.8E-10 57.6 7.6 63 465-527 6-68 (69)
96 KOG4261 Talin [Cytoskeleton] 97.9 1.4E-06 3E-11 92.2 -1.4 172 314-525 12-192 (1003)
97 KOG3493 Ubiquitin-like protein 97.9 3.8E-06 8.2E-11 60.7 1.2 69 458-526 3-71 (73)
98 PF11543 UN_NPL4: Nuclear pore 97.9 2E-05 4.4E-10 62.0 4.7 71 75-146 3-78 (80)
99 KOG1769 Ubiquitin-like protein 97.8 0.00014 3E-09 58.3 8.8 76 229-304 21-96 (99)
100 KOG0006 E3 ubiquitin-protein l 97.8 2.8E-05 6E-10 74.4 5.7 63 87-149 14-77 (446)
101 PF11470 TUG-UBL1: GLUT4 regul 97.8 4.8E-05 1E-09 57.0 5.5 65 309-373 1-65 (65)
102 KOG4495 RNA polymerase II tran 97.7 3.4E-05 7.4E-10 60.5 3.8 51 468-518 13-65 (110)
103 KOG3493 Ubiquitin-like protein 97.7 1.6E-05 3.4E-10 57.5 1.7 69 382-450 3-71 (73)
104 COG5227 SMT3 Ubiquitin-like pr 97.5 0.00011 2.4E-09 57.0 4.1 78 456-533 24-101 (103)
105 PF13019 Telomere_Sde2: Telome 97.5 0.00047 1E-08 61.0 8.5 76 457-532 1-88 (162)
106 KOG0006 E3 ubiquitin-protein l 97.4 0.00023 4.9E-09 68.3 5.8 70 457-526 1-73 (446)
107 KOG1872 Ubiquitin-specific pro 97.2 0.00047 1E-08 70.3 5.7 71 78-149 5-76 (473)
108 KOG4495 RNA polymerase II tran 97.2 0.00041 8.9E-09 54.6 3.9 62 1-62 1-65 (110)
109 PF11470 TUG-UBL1: GLUT4 regul 97.0 0.0027 6E-08 47.6 6.3 63 463-525 3-65 (65)
110 PF08817 YukD: WXG100 protein 96.8 0.0031 6.6E-08 49.7 5.9 68 458-525 4-78 (79)
111 PF08817 YukD: WXG100 protein 96.4 0.0085 1.8E-07 47.2 6.0 68 230-297 4-78 (79)
112 PF00789 UBX: UBX domain; Int 96.3 0.029 6.3E-07 44.4 8.6 72 455-526 5-81 (82)
113 PF10302 DUF2407: DUF2407 ubiq 96.2 0.0094 2E-07 48.7 5.1 57 79-135 3-64 (97)
114 PF13019 Telomere_Sde2: Telome 96.1 0.021 4.5E-07 50.7 7.0 63 77-139 1-71 (162)
115 COG5227 SMT3 Ubiquitin-like pr 96.0 0.025 5.4E-07 44.2 6.1 69 229-297 25-93 (103)
116 PF00789 UBX: UBX domain; Int 95.6 0.084 1.8E-06 41.7 8.1 72 151-222 5-81 (82)
117 smart00166 UBX Domain present 95.6 0.081 1.8E-06 41.6 7.9 71 456-526 4-79 (80)
118 KOG0013 Uncharacterized conser 95.5 0.014 3E-07 53.3 3.8 63 84-146 154-216 (231)
119 smart00166 UBX Domain present 95.4 0.08 1.7E-06 41.7 7.2 70 76-145 4-78 (80)
120 cd01767 UBX UBX (ubiquitin reg 95.3 0.13 2.8E-06 40.1 8.3 68 456-525 2-74 (77)
121 PF10302 DUF2407: DUF2407 ubiq 95.2 0.041 8.9E-07 45.0 5.1 49 163-211 12-64 (97)
122 KOG1639 Steroid reductase requ 95.1 0.035 7.6E-07 52.0 5.2 69 457-525 1-76 (297)
123 cd01770 p47_UBX p47-like ubiqu 95.1 0.12 2.7E-06 40.5 7.6 67 455-521 3-73 (79)
124 KOG0013 Uncharacterized conser 95.1 0.034 7.4E-07 50.8 4.9 64 465-528 155-218 (231)
125 COG5417 Uncharacterized small 95.0 0.11 2.3E-06 39.3 6.3 68 306-373 8-80 (81)
126 PF09379 FERM_N: FERM N-termin 94.9 0.12 2.6E-06 40.5 7.0 65 309-373 1-72 (80)
127 PF11620 GABP-alpha: GA-bindin 94.7 0.2 4.3E-06 39.1 7.3 59 240-298 4-62 (88)
128 cd01767 UBX UBX (ubiquitin reg 94.6 0.22 4.8E-06 38.8 7.8 67 381-449 3-74 (77)
129 cd01772 SAKS1_UBX SAKS1-like U 94.5 0.26 5.6E-06 38.7 7.9 69 457-526 5-78 (79)
130 PF12436 USP7_ICP0_bdg: ICP0-b 94.4 0.26 5.5E-06 48.0 9.6 106 319-424 89-223 (249)
131 cd01774 Faf1_like2_UBX Faf1 ik 94.2 0.25 5.5E-06 39.3 7.4 69 305-374 5-83 (85)
132 cd01773 Faf1_like1_UBX Faf1 ik 94.2 0.42 9.2E-06 37.6 8.4 73 455-528 4-81 (82)
133 COG5417 Uncharacterized small 94.1 0.2 4.4E-06 37.9 6.0 69 381-449 7-80 (81)
134 cd01774 Faf1_like2_UBX Faf1 ik 93.9 0.49 1.1E-05 37.7 8.5 70 456-526 4-83 (85)
135 cd01770 p47_UBX p47-like ubiqu 93.7 0.42 9.1E-06 37.5 7.7 68 228-295 4-75 (79)
136 cd01772 SAKS1_UBX SAKS1-like U 93.7 0.34 7.3E-06 38.0 7.1 69 381-450 5-78 (79)
137 cd01771 Faf1_UBX Faf1 UBX doma 93.6 0.54 1.2E-05 37.0 8.2 72 455-527 3-79 (80)
138 PF14533 USP7_C2: Ubiquitin-sp 93.4 0.66 1.4E-05 44.0 10.1 124 391-516 34-194 (213)
139 PRK06437 hypothetical protein; 93.3 0.74 1.6E-05 34.8 8.2 59 465-532 9-67 (67)
140 PF14533 USP7_C2: Ubiquitin-sp 92.9 0.61 1.3E-05 44.2 8.9 102 87-190 34-160 (213)
141 cd01773 Faf1_like1_UBX Faf1 ik 92.5 0.9 2E-05 35.8 7.8 72 379-451 4-80 (82)
142 KOG3206 Alpha-tubulin folding 92.2 0.42 9E-06 43.8 6.3 58 469-526 15-79 (234)
143 PRK08364 sulfur carrier protei 92.0 1.4 3E-05 33.6 8.3 66 457-532 5-70 (70)
144 cd01771 Faf1_UBX Faf1 UBX doma 91.8 1.1 2.5E-05 35.1 7.7 71 379-450 3-78 (80)
145 KOG1639 Steroid reductase requ 91.7 0.25 5.3E-06 46.6 4.4 69 306-374 2-77 (297)
146 PF12436 USP7_ICP0_bdg: ICP0-b 91.6 0.71 1.5E-05 44.9 7.9 107 243-349 89-224 (249)
147 PF11620 GABP-alpha: GA-bindin 91.5 0.61 1.3E-05 36.4 5.7 60 469-528 5-64 (88)
148 cd00754 MoaD Ubiquitin domain 91.1 0.91 2E-05 35.4 6.7 59 469-532 18-80 (80)
149 cd01760 RBD Ubiquitin-like dom 90.6 0.52 1.1E-05 36.2 4.6 45 307-351 2-46 (72)
150 PLN02799 Molybdopterin synthas 90.1 1.1 2.4E-05 35.3 6.4 71 457-532 2-82 (82)
151 smart00455 RBD Raf-like Ras-bi 90.1 0.62 1.3E-05 35.6 4.6 44 308-351 3-46 (70)
152 PF14453 ThiS-like: ThiS-like 89.9 1.4 3.1E-05 32.0 6.0 56 457-528 1-56 (57)
153 PF15044 CLU_N: Mitochondrial 89.8 0.59 1.3E-05 36.3 4.4 56 473-528 1-58 (76)
154 KOG3206 Alpha-tubulin folding 89.0 1.3 2.8E-05 40.8 6.4 92 89-183 15-120 (234)
155 PF15044 CLU_N: Mitochondrial 87.9 0.93 2E-05 35.2 4.3 56 245-300 1-58 (76)
156 PF12754 Blt1: Cell-cycle cont 87.4 0.17 3.8E-06 49.6 0.0 57 476-532 103-181 (309)
157 PF09379 FERM_N: FERM N-termin 87.4 3.4 7.3E-05 32.1 7.5 68 461-528 1-77 (80)
158 PRK06488 sulfur carrier protei 87.3 3.7 7.9E-05 30.7 7.2 59 466-532 7-65 (65)
159 cd06409 PB1_MUG70 The MUG70 pr 85.7 2.1 4.6E-05 34.0 5.3 43 307-349 3-48 (86)
160 PRK06437 hypothetical protein; 84.9 7.2 0.00016 29.4 7.7 55 313-376 9-63 (67)
161 smart00295 B41 Band 4.1 homolo 84.8 4.4 9.6E-05 37.7 8.2 70 305-374 4-81 (207)
162 TIGR01682 moaD molybdopterin c 84.5 5.3 0.00012 31.2 7.2 59 469-532 18-80 (80)
163 cd06409 PB1_MUG70 The MUG70 pr 84.5 3.1 6.6E-05 33.1 5.7 43 459-501 3-48 (86)
164 PRK06944 sulfur carrier protei 84.2 7.9 0.00017 28.7 7.7 57 470-532 9-65 (65)
165 PRK05659 sulfur carrier protei 84.2 7.6 0.00016 29.0 7.7 58 470-532 9-66 (66)
166 cd00565 ThiS ThiaminS ubiquiti 84.0 4.9 0.00011 30.0 6.5 59 469-532 7-65 (65)
167 TIGR03028 EpsE polysaccharide 83.4 44 0.00096 32.1 19.9 216 286-528 1-237 (239)
168 PRK08053 sulfur carrier protei 83.3 9.2 0.0002 28.6 7.8 58 470-532 9-66 (66)
169 cd06406 PB1_P67 A PB1 domain i 82.9 4.8 0.0001 31.4 6.1 37 164-200 12-48 (80)
170 PF02597 ThiS: ThiS family; I 82.9 5.2 0.00011 30.7 6.5 63 468-532 13-77 (77)
171 PRK07440 hypothetical protein; 82.6 9.5 0.00021 29.0 7.6 67 456-532 4-70 (70)
172 TIGR01683 thiS thiamine biosyn 82.6 7 0.00015 29.0 6.8 58 470-532 7-64 (64)
173 cd06406 PB1_P67 A PB1 domain i 82.5 5.5 0.00012 31.1 6.2 37 468-504 12-48 (80)
174 cd00754 MoaD Ubiquitin domain 82.4 4.4 9.5E-05 31.4 6.0 58 240-302 17-78 (80)
175 PRK05863 sulfur carrier protei 82.4 7 0.00015 29.2 6.8 57 470-532 9-65 (65)
176 cd01818 TIAM1_RBD Ubiquitin do 82.3 3.6 7.9E-05 31.6 5.0 42 308-349 3-44 (77)
177 PF14836 Ubiquitin_3: Ubiquiti 82.2 7.1 0.00015 31.2 6.9 63 315-378 14-82 (88)
178 TIGR01687 moaD_arch MoaD famil 82.1 10 0.00022 30.1 8.1 61 468-532 17-88 (88)
179 smart00455 RBD Raf-like Ras-bi 81.2 11 0.00023 28.8 7.5 48 461-508 4-53 (70)
180 cd01760 RBD Ubiquitin-like dom 80.9 9.3 0.0002 29.3 7.0 44 460-503 3-46 (72)
181 PRK06083 sulfur carrier protei 80.2 7.5 0.00016 30.8 6.5 67 456-532 18-84 (84)
182 PF02196 RBD: Raf-like Ras-bin 79.9 5.3 0.00012 30.5 5.4 45 307-351 3-47 (71)
183 PF10790 DUF2604: Protein of U 78.7 9.1 0.0002 28.2 5.8 65 465-529 4-72 (76)
184 PF14836 Ubiquitin_3: Ubiquiti 78.2 14 0.0003 29.5 7.3 64 468-532 15-84 (88)
185 KOG0012 DNA damage inducible p 76.9 2.8 6.1E-05 42.0 3.8 63 465-527 11-75 (380)
186 PF10790 DUF2604: Protein of U 76.7 9.8 0.00021 28.0 5.5 65 236-300 3-71 (76)
187 PF02196 RBD: Raf-like Ras-bin 76.6 29 0.00064 26.4 8.7 53 460-512 4-58 (71)
188 smart00666 PB1 PB1 domain. Pho 74.4 12 0.00026 29.0 6.3 44 459-503 4-47 (81)
189 PRK07696 sulfur carrier protei 74.1 22 0.00048 26.7 7.4 57 471-532 10-67 (67)
190 cd06407 PB1_NLP A PB1 domain i 73.7 6.5 0.00014 31.0 4.5 41 311-351 6-47 (82)
191 smart00295 B41 Band 4.1 homolo 73.5 25 0.00054 32.5 9.3 75 455-529 2-84 (207)
192 PF14453 ThiS-like: ThiS-like 73.4 19 0.00041 26.2 6.3 48 318-376 9-56 (57)
193 cd06407 PB1_NLP A PB1 domain i 73.4 11 0.00023 29.8 5.6 65 464-528 7-81 (82)
194 COG2104 ThiS Sulfur transfer p 73.1 38 0.00082 25.6 8.3 59 469-532 10-68 (68)
195 PRK08364 sulfur carrier protei 71.4 30 0.00064 26.2 7.6 52 316-376 15-66 (70)
196 PF02597 ThiS: ThiS family; I 69.5 14 0.0003 28.2 5.6 62 240-303 13-76 (77)
197 TIGR02958 sec_mycoba_snm4 secr 69.3 16 0.00036 38.8 7.7 70 459-529 5-81 (452)
198 KOG4583 Membrane-associated ER 68.8 2.7 5.9E-05 41.6 1.6 63 76-138 9-75 (391)
199 PF08337 Plexin_cytopl: Plexin 67.3 15 0.00033 39.6 6.9 66 313-378 200-291 (539)
200 cd01817 RGS12_RBD Ubiquitin do 67.3 47 0.001 25.5 7.6 46 462-507 5-52 (73)
201 KOG2982 Uncharacterized conser 66.4 8.1 0.00018 38.2 4.2 56 319-374 352-415 (418)
202 cd01818 TIAM1_RBD Ubiquitin do 66.1 16 0.00035 28.1 4.9 49 232-280 3-51 (77)
203 smart00666 PB1 PB1 domain. Pho 65.8 13 0.00028 28.9 4.7 40 312-351 8-47 (81)
204 KOG0012 DNA damage inducible p 64.9 7.9 0.00017 38.9 3.9 67 161-227 11-79 (380)
205 TIGR01682 moaD molybdopterin c 64.9 30 0.00064 26.9 6.6 57 240-301 17-77 (80)
206 KOG4250 TANK binding protein k 64.8 13 0.00027 41.0 5.7 47 5-51 319-365 (732)
207 cd01817 RGS12_RBD Ubiquitin do 64.5 14 0.00031 28.2 4.4 43 310-352 5-47 (73)
208 KOG2086 Protein tyrosine phosp 64.2 14 0.00031 37.6 5.6 69 227-295 304-376 (380)
209 TIGR03028 EpsE polysaccharide 64.2 1.4E+02 0.003 28.7 18.8 174 210-412 1-194 (239)
210 PRK11130 moaD molybdopterin sy 63.2 41 0.00088 26.2 7.1 58 470-532 18-81 (81)
211 TIGR01687 moaD_arch MoaD famil 63.2 37 0.00081 26.8 7.0 61 239-303 16-87 (88)
212 PLN02799 Molybdopterin synthas 63.0 22 0.00047 27.8 5.5 57 239-300 19-78 (82)
213 PF00564 PB1: PB1 domain; Int 62.4 28 0.00062 27.0 6.2 37 466-502 10-47 (84)
214 PF00788 RA: Ras association ( 62.2 27 0.00058 27.6 6.1 45 316-360 18-70 (93)
215 KOG4261 Talin [Cytoskeleton] 62.0 12 0.00027 41.2 5.0 106 240-348 14-129 (1003)
216 KOG2086 Protein tyrosine phosp 61.7 18 0.00038 36.9 5.8 68 454-521 303-374 (380)
217 cd01776 Rin1_RA Ubiquitin doma 61.2 9 0.00019 29.9 2.8 33 317-349 16-49 (87)
218 KOG2982 Uncharacterized conser 61.0 12 0.00025 37.1 4.2 56 471-526 352-415 (418)
219 cd06408 PB1_NoxR The PB1 domai 60.6 26 0.00056 27.9 5.4 50 309-361 5-55 (86)
220 PF08337 Plexin_cytopl: Plexin 60.4 32 0.00069 37.2 7.8 64 390-453 201-290 (539)
221 KOG4583 Membrane-associated ER 59.7 4.3 9.3E-05 40.2 1.0 60 456-515 9-72 (391)
222 cd06411 PB1_p51 The PB1 domain 58.0 14 0.00031 28.7 3.4 35 316-350 8-42 (78)
223 PTZ00380 microtubule-associate 57.4 19 0.00041 30.6 4.4 48 467-514 41-88 (121)
224 cd06408 PB1_NoxR The PB1 domai 57.2 51 0.0011 26.2 6.5 47 464-513 9-55 (86)
225 smart00144 PI3K_rbd PI3-kinase 56.9 57 0.0012 27.1 7.3 63 11-73 29-105 (108)
226 cd01768 RA RA (Ras-associating 56.8 38 0.00082 26.6 6.0 37 313-349 11-49 (87)
227 cd01777 SNX27_RA Ubiquitin dom 56.0 18 0.00039 28.8 3.7 40 307-346 4-43 (87)
228 PF14732 UAE_UbL: Ubiquitin/SU 56.0 34 0.00073 27.3 5.5 54 471-526 2-67 (87)
229 PRK06488 sulfur carrier protei 55.8 52 0.0011 24.4 6.2 58 311-376 4-61 (65)
230 KOG4250 TANK binding protein k 55.8 23 0.00049 39.1 5.8 43 84-126 322-364 (732)
231 PF12754 Blt1: Cell-cycle cont 55.5 3.9 8.4E-05 40.4 0.0 63 75-137 77-159 (309)
232 PRK11840 bifunctional sulfur c 53.5 53 0.0011 33.1 7.5 58 470-532 9-66 (326)
233 cd06396 PB1_NBR1 The PB1 domai 53.4 42 0.0009 26.4 5.4 40 460-501 2-44 (81)
234 cd06396 PB1_NBR1 The PB1 domai 53.4 34 0.00074 26.9 4.9 37 311-349 6-44 (81)
235 cd05992 PB1 The PB1 domain is 53.2 39 0.00085 26.0 5.5 37 466-502 9-46 (81)
236 smart00314 RA Ras association 53.0 28 0.00062 27.6 4.7 38 312-349 13-52 (90)
237 cd06398 PB1_Joka2 The PB1 doma 52.6 44 0.00096 26.9 5.7 66 464-529 7-88 (91)
238 cd01777 SNX27_RA Ubiquitin dom 52.5 30 0.00066 27.5 4.5 39 2-40 3-41 (87)
239 PF14847 Ras_bdg_2: Ras-bindin 50.9 45 0.00097 27.7 5.6 36 3-38 3-38 (105)
240 cd05992 PB1 The PB1 domain is 50.5 32 0.0007 26.5 4.6 39 312-350 7-46 (81)
241 cd06410 PB1_UP2 Uncharacterize 50.2 53 0.0012 26.8 5.8 40 461-501 17-56 (97)
242 KOG3439 Protein conjugation fa 49.8 46 0.001 27.6 5.3 50 295-350 31-80 (116)
243 cd01768 RA RA (Ras-associating 49.2 1.3E+02 0.0027 23.5 8.3 35 466-500 12-48 (87)
244 cd01764 Urm1 Urm1-like ubuitin 49.0 20 0.00044 29.0 3.2 55 243-302 23-92 (94)
245 KOG4598 Putative ubiquitin-spe 47.4 42 0.00091 36.9 6.0 182 316-500 878-1105(1203)
246 cd06411 PB1_p51 The PB1 domain 47.2 38 0.00082 26.4 4.2 35 468-502 8-42 (78)
247 cd01775 CYR1_RA Ubiquitin doma 47.0 81 0.0018 25.6 6.2 42 458-499 4-46 (97)
248 PF10209 DUF2340: Uncharacteri 46.8 28 0.0006 29.6 3.7 59 89-147 17-107 (122)
249 smart00314 RA Ras association 46.7 51 0.0011 26.1 5.3 38 2-39 6-44 (90)
250 cd01787 GRB7_RA RA (RAS-associ 46.2 44 0.00095 26.5 4.5 38 383-420 5-42 (85)
251 cd01764 Urm1 Urm1-like ubuitin 45.7 45 0.00098 27.0 4.8 59 472-532 24-94 (94)
252 PF14847 Ras_bdg_2: Ras-bindin 44.7 27 0.00058 29.0 3.3 36 307-342 3-38 (105)
253 cd00565 ThiS ThiaminS ubiquiti 44.1 1E+02 0.0022 22.8 6.2 57 313-376 5-61 (65)
254 PF14451 Ub-Mut7C: Mut7-C ubiq 44.0 77 0.0017 24.9 5.7 57 312-377 20-77 (81)
255 smart00144 PI3K_rbd PI3-kinase 43.5 1.4E+02 0.0031 24.7 7.6 73 76-148 17-104 (108)
256 PF11069 DUF2870: Protein of u 43.4 20 0.00042 29.1 2.2 27 42-69 3-29 (98)
257 PRK15078 polysaccharide export 43.3 4E+02 0.0087 27.6 18.6 182 284-491 82-290 (379)
258 PF14451 Ub-Mut7C: Mut7-C ubiq 42.8 92 0.002 24.5 5.9 52 466-526 22-74 (81)
259 TIGR02958 sec_mycoba_snm4 secr 42.8 86 0.0019 33.4 7.6 70 230-300 4-80 (452)
260 COG5100 NPL4 Nuclear pore prot 42.0 88 0.0019 32.1 7.0 70 457-527 1-78 (571)
261 KOG2689 Predicted ubiquitin re 41.4 58 0.0013 31.7 5.4 73 379-451 209-286 (290)
262 PRK05659 sulfur carrier protei 40.1 1.4E+02 0.003 22.0 6.4 59 311-376 4-62 (66)
263 PF00564 PB1: PB1 domain; Int 39.9 97 0.0021 23.9 5.9 39 85-123 9-48 (84)
264 PF14732 UAE_UbL: Ubiquitin/SU 39.8 1.3E+02 0.0027 24.0 6.4 54 323-376 7-69 (87)
265 PF02824 TGS: TGS domain; Int 39.7 42 0.0009 24.5 3.4 59 307-374 1-59 (60)
266 PF02991 Atg8: Autophagy prote 39.5 55 0.0012 27.1 4.4 44 471-514 37-81 (104)
267 PF10209 DUF2340: Uncharacteri 39.4 53 0.0011 27.9 4.3 55 169-223 22-107 (122)
268 PRK01777 hypothetical protein; 39.0 1.9E+02 0.0041 23.5 7.4 65 456-529 3-77 (95)
269 PF00788 RA: Ras association ( 38.9 1.1E+02 0.0023 24.0 6.1 33 468-500 18-52 (93)
270 TIGR01683 thiS thiamine biosyn 38.8 1.3E+02 0.0028 22.1 6.0 58 237-301 4-61 (64)
271 KOG3439 Protein conjugation fa 38.3 80 0.0017 26.2 5.0 49 2-50 32-84 (116)
272 PF02017 CIDE-N: CIDE-N domain 38.1 61 0.0013 25.3 4.2 49 325-376 21-71 (78)
273 cd01766 Ufm1 Urm1-like ubiquit 37.2 1.7E+02 0.0036 22.5 6.1 63 469-531 18-81 (82)
274 KOG4572 Predicted DNA-binding 36.4 45 0.00097 37.2 4.3 52 465-516 3-56 (1424)
275 PRK07440 hypothetical protein; 35.7 1.7E+02 0.0038 22.1 6.4 63 380-452 4-66 (70)
276 cd01615 CIDE_N CIDE_N domain, 35.7 1.6E+02 0.0035 23.0 6.1 48 314-362 11-60 (78)
277 PF02505 MCR_D: Methyl-coenzym 35.3 2.4E+02 0.0052 25.0 7.8 111 12-136 5-121 (153)
278 PF11069 DUF2870: Protein of u 34.4 34 0.00073 27.8 2.3 24 118-142 3-26 (98)
279 smart00266 CAD Domains present 33.8 80 0.0017 24.3 4.1 46 316-362 11-58 (74)
280 cd06397 PB1_UP1 Uncharacterize 33.7 93 0.002 24.3 4.5 39 463-501 6-44 (82)
281 KOG4572 Predicted DNA-binding 32.9 74 0.0016 35.6 5.2 62 237-298 3-68 (1424)
282 cd01611 GABARAP Ubiquitin doma 31.9 77 0.0017 26.6 4.2 58 470-528 44-106 (112)
283 PF03671 Ufm1: Ubiquitin fold 31.7 1.7E+02 0.0037 22.3 5.4 59 468-526 17-76 (76)
284 PF00794 PI3K_rbd: PI3-kinase 31.7 1.8E+02 0.004 23.8 6.5 73 75-147 15-101 (106)
285 PF10787 YfmQ: Uncharacterised 31.5 1.3E+02 0.0028 26.2 5.4 87 19-105 23-123 (149)
286 PF08825 E2_bind: E2 binding d 31.5 63 0.0014 25.6 3.4 55 471-526 1-69 (84)
287 cd01787 GRB7_RA RA (RAS-associ 31.2 91 0.002 24.8 4.2 39 307-345 5-43 (85)
288 cd06410 PB1_UP2 Uncharacterize 31.2 1.3E+02 0.0028 24.5 5.3 40 81-121 17-56 (97)
289 PRK05863 sulfur carrier protei 30.7 1.9E+02 0.0042 21.3 5.9 56 237-300 6-61 (65)
290 KOG0007 Splicing factor 3a, su 29.2 28 0.00062 35.5 1.4 50 83-132 289-339 (341)
291 PRK08453 fliD flagellar cappin 29.1 1.4E+02 0.0031 33.4 6.7 86 311-397 134-236 (673)
292 cd01612 APG12_C Ubiquitin-like 28.0 2.2E+02 0.0047 22.7 6.0 58 469-527 18-80 (87)
293 PF11834 DUF3354: Domain of un 27.8 81 0.0018 24.0 3.3 43 477-525 26-68 (69)
294 PTZ00380 microtubule-associate 27.6 53 0.0011 28.0 2.5 47 87-134 41-88 (121)
295 cd06398 PB1_Joka2 The PB1 doma 27.5 1.6E+02 0.0035 23.7 5.2 40 311-350 6-51 (91)
296 PF02017 CIDE-N: CIDE-N domain 27.4 1.6E+02 0.0035 22.9 4.9 34 477-510 21-56 (78)
297 KOG2689 Predicted ubiquitin re 26.6 1.5E+02 0.0033 28.9 5.6 71 151-221 209-284 (290)
298 TIGR03027 pepcterm_export puta 26.2 4.7E+02 0.01 23.3 12.0 140 363-526 1-161 (165)
299 TIGR03260 met_CoM_red_D methyl 24.8 3.6E+02 0.0079 23.8 7.1 111 12-136 4-119 (150)
300 PF02505 MCR_D: Methyl-coenzym 24.3 2.7E+02 0.0058 24.7 6.2 109 397-520 10-124 (153)
301 KOG0007 Splicing factor 3a, su 24.2 41 0.00089 34.3 1.5 51 311-361 289-340 (341)
302 cd01782 AF6_RA_repeat1 Ubiquit 23.2 2.8E+02 0.006 23.1 5.7 36 1-36 24-61 (112)
303 COG1163 DRG Predicted GTPase [ 23.1 3.5E+02 0.0075 27.5 7.5 56 319-375 308-364 (365)
304 cd06539 CIDE_N_A CIDE_N domain 23.0 1.3E+02 0.0029 23.4 3.7 38 325-362 21-60 (78)
305 PRK05738 rplW 50S ribosomal pr 22.6 1.5E+02 0.0032 23.9 4.2 39 466-504 20-59 (92)
306 PF00794 PI3K_rbd: PI3-kinase 22.3 3.7E+02 0.0079 22.0 6.7 71 457-527 17-101 (106)
307 smart00266 CAD Domains present 22.1 1.2E+02 0.0026 23.4 3.2 35 476-510 18-54 (74)
308 KOG2561 Adaptor protein NUB1, 21.6 53 0.0012 34.2 1.7 53 470-522 53-105 (568)
309 PF04017 DUF366: Domain of unk 21.5 2.6E+02 0.0057 25.5 5.8 30 268-297 7-36 (183)
310 PF00276 Ribosomal_L23: Riboso 21.3 1.1E+02 0.0023 24.6 3.1 39 467-505 21-60 (91)
311 PF02192 PI3K_p85B: PI3-kinase 21.0 83 0.0018 24.6 2.3 23 317-339 2-24 (78)
312 KOG3391 Transcriptional co-rep 20.9 75 0.0016 27.4 2.1 27 502-528 110-136 (151)
313 PF10787 YfmQ: Uncharacterised 20.4 4.5E+02 0.0098 23.0 6.7 92 166-257 18-123 (149)
314 TIGR03636 L23_arch archaeal ri 20.1 1.8E+02 0.0038 22.6 3.9 33 467-499 15-47 (77)
315 cd01775 CYR1_RA Ubiquitin doma 20.1 4.9E+02 0.011 21.2 6.5 38 312-349 10-48 (97)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.82 E-value=3.4e-20 Score=153.42 Aligned_cols=100 Identities=42% Similarity=0.613 Sum_probs=94.8
Q ss_pred CCCccccccccccccceEEEecCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCcc
Q 009518 53 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (533)
Q Consensus 53 ~~tl~~y~i~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l 132 (533)
.+....+++.+-+++|+++++++.|+|+||+++|+++.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (103)
T cd01802 4 KKEPPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCL 83 (103)
T ss_pred ccCCCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcH
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccceeeeeeccc
Q 009518 133 ADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 133 ~~y~i~~~s~i~l~~~~~~~ 152 (533)
++|+|.++++|++.++++||
T Consensus 84 ~dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 84 NDYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred HHcCCCCCCEEEEEEecCCC
Confidence 99999999999999987764
No 2
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.82 E-value=9.5e-20 Score=150.77 Aligned_cols=95 Identities=44% Similarity=0.647 Sum_probs=90.7
Q ss_pred ccccccCCeEEEEEEecCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCC
Q 009518 438 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 517 (533)
Q Consensus 438 ~~~i~~~~~l~l~~~~~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I 517 (533)
-+++.+-+++++..+.++.|+|+|++..|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I 88 (103)
T cd01802 9 FFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYNI 88 (103)
T ss_pred ccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcCC
Confidence 45666678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEEecCCC
Q 009518 518 QKESTLHLVLRLRGG 532 (533)
Q Consensus 518 ~~~~~l~l~~~l~GG 532 (533)
+++++|++++|++||
T Consensus 89 ~~~stL~l~~~l~GG 103 (103)
T cd01802 89 SEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCEEEEEEecCCC
Confidence 999999999999998
No 3
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.78 E-value=8e-19 Score=137.34 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=71.7
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
|+|+|++. ++++++|++++||++||++|++.+|+|+++|+|+|+|++|+|++||++|||++++|||+++|++||
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999984 689999999999999999999999999999999999999999999999999999999999999998
No 4
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=5e-20 Score=145.03 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=74.4
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecCC
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (533)
||+|+.++.|+|++++|+|||||+++|++|++++|||+++|+|+|+|++|+|++|+++|+|+..+|+|++++++++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988776
No 5
>PTZ00044 ubiquitin; Provisional
Probab=99.74 E-value=6.6e-18 Score=133.17 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=75.0
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
|+|+|++.+|+++.+++++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|++++|++|++.++++||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.73 E-value=1.1e-17 Score=130.96 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=72.7
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
|||++..|+++++++++++||++||++|++..|+|+++|+|+|+|+.|+|++||++|||+++++|++.+|++||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=1.8e-18 Score=147.59 Aligned_cols=76 Identities=96% Similarity=1.328 Sum_probs=74.4
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecCC
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (533)
|+|||+++.|++++++|+++|||+++|+|||+++|||+++|+|+|+|++|+|+++|+||+|+.++|+||+++++|+
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998765
No 8
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.71 E-value=1.5e-17 Score=130.18 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.5
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEe
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (533)
|+|+|++.+|++++++|++++||.++|++|+++.|+|+++|+|+|+|++|+|+++|++|+|.+++++|+++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999875
No 9
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.71 E-value=2.2e-17 Score=129.17 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=70.6
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecCC
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (533)
|||||++. ++++++|++++||.++|++|++++|+|+++|+|+|+|++|+|+++|++|+|.+++++|++++++++
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 89999984 799999999999999999999999999999999999999999999999999999999999987653
No 10
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.71 E-value=3.7e-17 Score=128.96 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=74.8
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
|+|+|++.+|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++|++.+|++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 11
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.71 E-value=3.7e-17 Score=127.95 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.4
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l 529 (533)
|+|+|++..|+.+.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||+++++|++++|.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999885
No 12
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.70 E-value=7.8e-17 Score=127.11 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=74.7
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
|+|+|++.+|+.+.++++++.||++||++|++.+|+|++.|+|+|+|+.|+|+.||++|++.+|++|++.++++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 13
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.2e-18 Score=135.75 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=73.0
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEEEEecCC
Q 009518 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~~ 380 (533)
|++|++++.|+|++++++|++||.++|++|+++.||||++|+|.|+|++|+|+.|+++|||+..||||+.++..++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999887665
No 14
>PTZ00044 ubiquitin; Provisional
Probab=99.69 E-value=6.2e-17 Score=127.61 Aligned_cols=75 Identities=49% Similarity=0.803 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecC
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (533)
|||||++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+.+++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988755
No 15
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.68 E-value=1.6e-16 Score=125.37 Aligned_cols=77 Identities=25% Similarity=0.480 Sum_probs=74.7
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG~ 533 (533)
+|+|+|+...|+.+.+++++++||++||++|++..|+|+++|+|+|.|+.|+|+ +|++|||++|++|+++..++||+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 589999999999999999999999999999999999999999999999999998 99999999999999999999994
No 16
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.67 E-value=9.8e-17 Score=126.15 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.8
Q ss_pred CeEEEEcCCCcE-EEEE-ecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEec
Q 009518 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (533)
Q Consensus 1 ~~i~~~~~~g~~-~~~~-v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (533)
|||||++++|++ ++++ +.+++||.++|++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 999999999997 7895 8999999999999999999999999999999999999999999999999999998864
No 17
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.66 E-value=2.4e-16 Score=123.91 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.7
Q ss_pred eeeEEEeCCCCE-EEEE-ecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 009518 457 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 530 (533)
Q Consensus 457 m~i~v~~~~g~~-~~~~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~ 530 (533)
|+|+|++..|+. +.++ +.+++||++||.+|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|++.+|+-
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 899999999997 6885 8999999999999999999999999999999999999999999999999999999874
No 18
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.64 E-value=3.8e-16 Score=122.17 Aligned_cols=73 Identities=32% Similarity=0.597 Sum_probs=70.5
Q ss_pred EEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecC
Q 009518 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (533)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (533)
|||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+++|++|+|.+++++++.+++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999988654
No 19
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-16 Score=112.08 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=67.7
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceee
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~ 146 (533)
|.|.||+++|+.+.++++|+|+|+.+|+++++++||||.+|+|+|+|+++.|+++-++|++.-||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999974
No 20
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.4e-16 Score=136.04 Aligned_cols=77 Identities=95% Similarity=1.301 Sum_probs=75.4
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG~ 533 (533)
|+|||+++.|++..++|.+++||..+|++|++.+|||+++|||+|.|++|+|+.||+||+|+..+||+|++|++||.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999993
No 21
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.63 E-value=7.8e-16 Score=119.09 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=69.1
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
.|.|+|++..|+.+.++|++++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||.+|++|||..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 488999999999999999999999999999999999999999999999999999999999999999999863
No 22
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.63 E-value=5e-16 Score=120.18 Aligned_cols=71 Identities=24% Similarity=0.378 Sum_probs=68.6
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeee
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~ 147 (533)
|.|+|++..|+.+.++|++++||++||++|+++.|+|+++|+|+|.|+.|+|+.+|++|||.+|++|||..
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999863
No 23
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.62 E-value=1.1e-15 Score=118.24 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=68.0
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009518 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
|+|++..|+.+.+++++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||++||+|||+.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6889999999999999999999999999999999999999999999999999999999999999999876
No 24
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.62 E-value=8.9e-16 Score=121.05 Aligned_cols=77 Identities=25% Similarity=0.483 Sum_probs=73.1
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccce
Q 009518 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (533)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~~ 153 (533)
.|+|+||+..|+.++++|++++||++||++|+++.++|+++|+|+|+|+.|+|+ +|++|||.+|++|+++....+|+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 489999999999999999999999999999999999999999999999999999 99999999999999998876663
No 25
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.61 E-value=2e-15 Score=119.08 Aligned_cols=75 Identities=55% Similarity=0.948 Sum_probs=72.8
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecC
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (533)
|+|+|++++|+++.++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988765
No 26
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.61 E-value=7.8e-16 Score=118.37 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.9
Q ss_pred EEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeee
Q 009518 80 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 80 ~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~ 147 (533)
.||.++|++++++|++++||+++|++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|||++
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57889999999999999999999999999999999999999999999999999999999999999976
No 27
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.61 E-value=1.9e-15 Score=119.14 Aligned_cols=75 Identities=96% Similarity=1.311 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecC
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (533)
|+|+|++++|+++.++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+.+++++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~g 75 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998765
No 28
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.60 E-value=5e-15 Score=119.39 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=77.0
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
+..|+|+|++.+|+...++|.+++|++.||.+++++.|+|+++|+|+|+|+.|+++.|+++||+++|++|++.++++||
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999998
No 29
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=5.8e-16 Score=108.53 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=68.1
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceE
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (533)
|.|-|++++|+.+.++++|.|+|+.||++|++++||||.+|+|+|.|+++.|++|-++|+...+|.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7789999999999999999999999999999999999999999999999999999999999999999984
No 30
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.60 E-value=2.8e-15 Score=115.28 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.8
Q ss_pred EEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009518 460 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 460 ~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
.|+...|+++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||.+|++|||.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57888999999999999999999999999999999999999999999999999999999999999986
No 31
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.60 E-value=1.8e-15 Score=117.07 Aligned_cols=69 Identities=38% Similarity=0.721 Sum_probs=67.2
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEEE
Q 009518 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~ 375 (533)
|||++..|+++++.+++++||+++|++|+++.|+|+++|+|+|+|++|+|+.+|++|+|+++|++|+..
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 689999999999999999999999999999999999999999999999999999999999999999974
No 32
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.59 E-value=5.6e-15 Score=116.73 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.6
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCC--CCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gi--p~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l 529 (533)
|+|+|++.+|+.+.+++++++||++||++|++.+|+ |+++|+|+|+|+.|+|+.+|++|||++|++|++.++-
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 789999999999999999999999999999999999 9999999999999999999999999999999998864
No 33
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.58 E-value=4.3e-15 Score=116.72 Aligned_cols=69 Identities=33% Similarity=0.677 Sum_probs=67.1
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 464 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 464 ~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
++|+++.+++++++||++||.+|+..+|+|+++|+|+|+|+.|+|+.||++|+|.+|++|++.++++||
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 468899999999999999999999999999999999999999999999999999999999999999998
No 34
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.57 E-value=8.4e-15 Score=114.17 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.8
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
|+|+|+...|+.+.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++|++..|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999875
No 35
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.57 E-value=5.1e-15 Score=116.98 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.3
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCC--CCCCeEEEecCcccccCCccccccccccccceeeeee
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi--p~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~ 149 (533)
|+|+|++.+|+.+.+++++++||++||++|++.+|+ |+++|+|+|+|+.|+|+.+|++|++.+|++++++++.
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 789999999999999999999999999999999999 9999999999999999999999999999999998754
No 36
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.55 E-value=1.1e-14 Score=115.63 Aligned_cols=73 Identities=33% Similarity=0.474 Sum_probs=70.5
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEE--EEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L--~~~g~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
+|+|+|+...|+.+.+++++++||++||++|++..|+|+++|+| .|+|+.|+|+.+|++|||.+|++|+++++
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 38999999999999999999999999999999999999999999 78999999999999999999999999988
No 37
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.55 E-value=1.4e-14 Score=112.39 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.4
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
+.|+|++..|+ ..+++++++||++||++|++.+|+|+++|+|.|+|+.|+|++||++|||++|++|++++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46899999997 589999999999999999999999999999999999999999999999999999999886
No 38
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.55 E-value=1.4e-14 Score=111.92 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=66.1
Q ss_pred EeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 009518 462 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 530 (533)
Q Consensus 462 ~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~ 530 (533)
++.+|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.||++|||.+|++|++.+|.|
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 467899999999999999999999999999999999999999999999999999999999999999864
No 39
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.55 E-value=8.6e-15 Score=116.23 Aligned_cols=74 Identities=32% Similarity=0.455 Sum_probs=70.9
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEE--EecCcccccCCccccccccccccceeeeee
Q 009518 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L--~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~ 149 (533)
+|+|+||+..|+.+.+++++++||++||++|++..|+|+++|+| +|.|+.|+|+.+|++||+.+|++++++++.
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 48999999999999999999999999999999999999999999 899999999999999999999999998863
No 40
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.54 E-value=1.5e-14 Score=112.77 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.7
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEE
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (533)
|+|+|++++|+++++++.+++||.++|++|++..|+|++.|+|+|+|+.|+|+++|++|++.+++++|++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999999998753
No 41
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.52 E-value=3e-14 Score=110.21 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.0
Q ss_pred eEEEeC-CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCC-CcccccCCCCCCEEEEE
Q 009518 459 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 526 (533)
Q Consensus 459 i~v~~~-~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~-~tL~~~~I~~~~~l~l~ 526 (533)
|+|++. .|+++.++|++++||++||.+|++.+|+|+++|+|+|+|++|+|+ .+|++|||++|++|+|.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 568888 899999999999999999999999999999999999999999987 68999999999999874
No 42
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.51 E-value=3e-14 Score=109.98 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=66.1
Q ss_pred EecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeec
Q 009518 82 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 82 k~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~ 150 (533)
|+++|+.+.++|++++||++||++|+...|+|++.|+|+|+|+.|+|+.+|++|+|.+|++|++..+++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 678999999999999999999999999999999999999999999999999999999999999998753
No 43
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.50 E-value=3.9e-14 Score=109.57 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.7
Q ss_pred eEEEcc-CCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCC-CcccccccccCCeEEEE
Q 009518 307 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 374 (533)
Q Consensus 307 i~v~~~-~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~-~tl~~y~i~~~~~l~l~ 374 (533)
++|++. +|+++++.+++++||+++|++|+++.|+|+++|+|+|+|+.|+|+ .+|++|+|+++++++|.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 468898 999999999999999999999999999999999999999999987 68999999999999985
No 44
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.49 E-value=5.3e-14 Score=109.11 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.6
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEE
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (533)
|.|+|++++|+ .++++++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|++.+++++|++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 57999999997 599999999999999999999999999999999999999999999999999999999864
No 45
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.47 E-value=5.7e-14 Score=110.36 Aligned_cols=69 Identities=33% Similarity=0.677 Sum_probs=66.0
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
++|++++++|++++||++||++|+...|+|+++|+|+|+|+.|+|+.+|++|++.++++|+++++++++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999987664
No 46
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.47 E-value=7.3e-14 Score=108.47 Aligned_cols=72 Identities=25% Similarity=0.271 Sum_probs=64.0
Q ss_pred CeEEEEEecCCcE--EEEEEcCCCcHHHHHHHHccccC--CCCCCeEEEecCcccccCCcccccc--ccccccceeee
Q 009518 76 GMQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 147 (533)
Q Consensus 76 ~~~i~vk~~~g~~--~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~~l~~y~--i~~~s~i~l~~ 147 (533)
++.++||+++|+. +.+++++++||++||++|++..+ .|+++|+|+|+||.|+|+.+|++|. +.++.+|||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 3789999999998 55556899999999999998764 5579999999999999999999996 99999999974
No 47
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.44 E-value=2.6e-13 Score=105.40 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.1
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
++|.|++. |+.+.+++++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||.+|++|++..
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 46888887 88999999999999999999999999999999999999999999999999999999999864
No 48
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.43 E-value=2.4e-13 Score=105.75 Aligned_cols=69 Identities=23% Similarity=0.440 Sum_probs=65.5
Q ss_pred eeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEee---cCccccCCccccccccccCCeEEEE
Q 009518 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 450 (533)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~---~g~~l~d~~~L~~~~i~~~~~l~l~ 450 (533)
|+|.|| |+|+.+++++++++||++||++|++.+|||+++|+|+| .|+.++|+.+|++|++.+|+.++|+
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 468888 99999999999999999999999999999999999996 8899999999999999999999986
No 49
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.43 E-value=3.6e-13 Score=104.60 Aligned_cols=72 Identities=24% Similarity=0.240 Sum_probs=64.2
Q ss_pred CeeeEEEeCCCCEEEE--EecCCCcHHHHHHHHhhhcC--CCCCcEEEEEcCeecCCCCcccccC--CCCCCEEEEEE
Q 009518 456 GMQIFVKTLTGKTITL--EVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 527 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~--~v~~~~tV~~lK~~I~~~~g--ip~~~q~L~~~g~~L~d~~tL~~~~--I~~~~~l~l~~ 527 (533)
++.++|++.+++.+.+ ++.+++||++||++|++..+ .|+++|+|+|.|+.|+|+.||++|+ +.+|.++||++
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 4679999999998555 55899999999999999874 4579999999999999999999996 99999999985
No 50
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.42 E-value=2.9e-13 Score=105.31 Aligned_cols=70 Identities=23% Similarity=0.413 Sum_probs=65.3
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEe---cCcccccCCccccccccccccceeee
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~G~~L~d~~~l~~y~i~~~s~i~l~~ 147 (533)
|.|.|| ++|+.+.++|++++||++||++|++..|+|+++|+|+| .|+.|.|+.+|++|+|.+|+.|+|+.
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 467787 78899999999999999999999999999999999996 89999999999999999999999863
No 51
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.41 E-value=3.7e-13 Score=104.49 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.3
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeee
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~ 147 (533)
|+|+||+. |+.+.+++++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|++.+|++|+++.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 57899986 99999999999999999999999999999999999999999999999999999999998863
No 52
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.40 E-value=8.6e-13 Score=106.37 Aligned_cols=76 Identities=18% Similarity=0.467 Sum_probs=73.1
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecCC
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (533)
|+|+|++++|+...++|++++++..||++++++.|+|++.|+|+|+|+.|+++.|+++|++.++++|+++++++++
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999887653
No 53
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.32 E-value=3.7e-12 Score=96.58 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.0
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 521 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~ 521 (533)
|+|+|++.. +.+.++|++++||++||.+|+..+|+|++.|+|+|+|+.|.|+.||++|||.+|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999988 6899999999999999999999999999999999999999999999999999885
No 54
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.28 E-value=9.2e-12 Score=96.90 Aligned_cols=64 Identities=30% Similarity=0.372 Sum_probs=58.5
Q ss_pred eCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecC-CCCcccccCCC-CCCEEEEEE
Q 009518 463 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 527 (533)
Q Consensus 463 ~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~-d~~tL~~~~I~-~~~~l~l~~ 527 (533)
...|.+..++|++++||++||.+|++.+|+|+++|+| |+|+.|. |+.||++||+. +|++++|.+
T Consensus 9 ~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 9 QSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred ccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 3457789999999999999999999999999999999 9999995 67899999999 889999864
No 55
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.27 E-value=5.9e-12 Score=95.45 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.1
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccc
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 141 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s 141 (533)
|+|+||+.+ +.+.++|++++||++||++|+...|+|+++|+|+|+|+.|+|+.+|++|++.+|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999998 7999999999999999999999999999999999999999999999999999875
No 56
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.27 E-value=8.6e-12 Score=97.07 Aligned_cols=69 Identities=29% Similarity=0.372 Sum_probs=61.8
Q ss_pred eEEEEc--CCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcC-CCCCccccccc-cccccceEE
Q 009518 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (533)
Q Consensus 2 ~i~~~~--~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~-~~~tl~~y~i~-~~sti~l~~ 71 (533)
.++|++ ..|.+++++|.+++||.++|+||+++.|+|++.|+| |+|+.|. |+++|++|++. +++++||.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 466765 568999999999999999999999999999999999 9999985 67999999998 778999864
No 57
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.27 E-value=5.1e-12 Score=96.66 Aligned_cols=53 Identities=32% Similarity=0.547 Sum_probs=49.3
Q ss_pred CCCcHHHHHHHHhhhc--CCC-CCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009518 475 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 475 ~~~tV~~lK~~I~~~~--gip-~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
.++||.+||++|+++. |++ +++|+|+|.|+.|+|++||++|||++|++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 5789999999999995 575 9999999999999999999999999999999975
No 58
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.26 E-value=5e-12 Score=96.70 Aligned_cols=53 Identities=32% Similarity=0.547 Sum_probs=48.9
Q ss_pred CCchHHHHHHHhhhhc--CCC-CCCeEEEeCCeecCCCCCcccccCCCCCEEEEEE
Q 009518 171 SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (533)
Q Consensus 171 ~~dtV~~lK~~i~~~~--gip-~~~q~L~~~g~~L~d~~tl~~y~I~~~s~i~l~~ 223 (533)
.++||.+||++|+++. |+| +++|+|+|+|+.|+|+++|++|+|++|++|||+.
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 4679999999999995 575 9999999999999999999999999999999874
No 59
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.21 E-value=1.6e-11 Score=124.61 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.1
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccC---CCCCCeEEEecCcccccCCccccccccccccceeeeee
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g---ip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~ 149 (533)
|+|+||++.|+++.++|++++||.+||++|+...| +|+++|+|+|+|+.|+|+++|++|+|+++++|++++..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 78999999999999999999999999999999998 99999999999999999999999999999999998754
No 60
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=4.4e-11 Score=121.44 Aligned_cols=72 Identities=31% Similarity=0.618 Sum_probs=69.6
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcC---CCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~g---ip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
|+|+||+..|+.+.++|++++||.+||.+|+...| +|+++|+|+|+|+.|+|+++|++|||+++++|++.+.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence 88999999999999999999999999999999998 9999999999999999999999999999999998865
No 61
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.17 E-value=1.9e-11 Score=99.83 Aligned_cols=75 Identities=27% Similarity=0.369 Sum_probs=64.3
Q ss_pred CeEEEEEecCCc-EEEEEEcCCCcHHHHHHHHc-----cccCCC--CCCeEEEecCcccccCCcccccc------ccccc
Q 009518 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKES 141 (533)
Q Consensus 76 ~~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~-----~~~gip--~~~q~L~~~G~~L~d~~~l~~y~------i~~~s 141 (533)
.+.|.++..+|. .=+..+++++||+++|++|+ +++++| +++|+|+|+||+|+|++||++|+ +...+
T Consensus 4 ~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~ 83 (113)
T cd01814 4 QIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVI 83 (113)
T ss_pred cEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCce
Confidence 456777778885 45677899999999999999 556677 99999999999999999999999 67779
Q ss_pred cceeeeeec
Q 009518 142 TLHLVLRLR 150 (533)
Q Consensus 142 ~i~l~~~~~ 150 (533)
|+||++++.
T Consensus 84 TmHvvlr~~ 92 (113)
T cd01814 84 TMHVVVQPP 92 (113)
T ss_pred EEEEEecCC
Confidence 999999874
No 62
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.16 E-value=2.4e-11 Score=99.22 Aligned_cols=73 Identities=27% Similarity=0.373 Sum_probs=64.4
Q ss_pred eEEEEcCCCc-EEEEEecCcccHHHHHHHHH-----hhhCCC--CccceEEEccEEcCCCCCccccc------ccccccc
Q 009518 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL 67 (533)
Q Consensus 2 ~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~-----~~~~i~--~~~q~l~~~g~~L~~~~tl~~y~------i~~~sti 67 (533)
.|-||..+|. .=++.+.++|||.++|+||+ +++++| +++|+|+|+|++|+|++||++|+ +...+|+
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 4678888884 44588889999999999999 666777 99999999999999999999999 8889999
Q ss_pred ceEEEec
Q 009518 68 HLVLRLR 74 (533)
Q Consensus 68 ~l~~~~~ 74 (533)
|+++++.
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 9999764
No 63
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.08 E-value=4.1e-10 Score=86.59 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.1
Q ss_pred EEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009518 461 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 461 v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
|+..+|+.+.+.+++++||.+||.+|+..+|+|++.|+|.|+|+.|+|+.+|++|++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5666789999999999999999999999999999999999999999999999999999999999864
No 64
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.07 E-value=4.2e-10 Score=87.51 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.8
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCC-CcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~-~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
|+|+|++.+|+.+.+.|.+++++..|+..+++..|+|+ +.++|.|+|+.|+++.|++++|+++|++|++.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 67899999999999999999999999999999999999 999999999999999999999999999999863
No 65
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.07 E-value=1.9e-10 Score=90.84 Aligned_cols=62 Identities=27% Similarity=0.328 Sum_probs=56.7
Q ss_pred EEEEEecCCCcHHHHHHHhhcccCCCCcceeEeecCccc-cCCccccccccccCCeEEEEEEe
Q 009518 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL 453 (533)
Q Consensus 392 ~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l-~d~~~L~~~~i~~~~~l~l~~~~ 453 (533)
..+++|++++||++||.+|.+.++|||++|+|.++|..| +|++||++||+.++++|+|....
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 357889999999999999999999999999999999887 56789999999999999998754
No 66
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.05 E-value=3.4e-10 Score=89.43 Aligned_cols=62 Identities=27% Similarity=0.314 Sum_probs=56.9
Q ss_pred eEEeeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCC-CCCcccccCCCCCEEEEEEEe
Q 009518 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 225 (533)
Q Consensus 164 ~~~i~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~L~d-~~tl~~y~I~~~s~i~l~~~~ 225 (533)
..+++|++++||.+||.+|++++++|+++|+|+|.|+.|.| .+||++|||..+|+|+|.++.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 35788999999999999999999999999999999999965 589999999999999998753
No 67
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.02 E-value=4.7e-10 Score=86.27 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.3
Q ss_pred EEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeee
Q 009518 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~ 147 (533)
|+..+|+.+.+++++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|.+|++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 6677899999999999999999999999999999999999999999999999999999999998864
No 68
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.99 E-value=3.7e-10 Score=114.42 Aligned_cols=74 Identities=36% Similarity=0.560 Sum_probs=70.2
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeee
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~ 149 (533)
..+.|+||+.++ .+.+.|..+.||.+||+.|...+++|+++++|||+||+|.|+.||..|||.+|.||||+.+.
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~ 87 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKS 87 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEecc
Confidence 348899999988 88999999999999999999999999999999999999999999999999999999999864
No 69
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.98 E-value=7e-10 Score=112.44 Aligned_cols=74 Identities=36% Similarity=0.565 Sum_probs=69.8
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 530 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~ 530 (533)
.++|.||+.++ .+.+.|..+.||.+||+.|....++|+++++|+|.||.|+|+.||..|||++|.||||+.+..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 47789999887 799999999999999999999999999999999999999999999999999999999998753
No 70
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.96 E-value=7.9e-10 Score=106.42 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.4
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccC--CCCCCeEEEecCcccccCCccccccccccccceeeeeec
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~ 150 (533)
|.|+||++.|.+|++++.|++||.++|.+|+...| .|+.+|+|+|+|+.|.|+.++.+|++.+++.|.+++...
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 68999999999999999999999999999999988 999999999999999999999999999999998887644
No 71
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.91 E-value=4.9e-09 Score=81.38 Aligned_cols=73 Identities=84% Similarity=1.127 Sum_probs=69.2
Q ss_pred eEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEec
Q 009518 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (533)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (533)
++++.+..|+++++++.++++|..+|.+|..+.|+|++.|++.+.|+.|+|+.++.+|+|..++++++..+++
T Consensus 1 ~~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 1 QIFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred CEEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 4788999999999999999999999999999999999999999999999999999999999999999987654
No 72
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.88 E-value=4.1e-09 Score=81.89 Aligned_cols=70 Identities=34% Similarity=0.629 Sum_probs=65.3
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCC-CceeEEeccEEcCCCCcccccccccCCeEEEE
Q 009518 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~-~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
|+|+|+..+|+.+.+.+.+++++..|++.++++.|+|+ ...+|+|.|..|+++.|+++|+|+++++|++.
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 46889999999999999999999999999999999999 99999999999999999999999999999875
No 73
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.87 E-value=3.1e-09 Score=102.37 Aligned_cols=73 Identities=38% Similarity=0.667 Sum_probs=69.1
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhC--CCCccceEEEccEEcCCCCCccccccccccccceEEEe
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~--i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (533)
|.|+|+++.|++|++++.|+|||.++|+||+...| .|+.+|.|+|+|+.|.|+.++.+|++..++-+-+.+.-
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK 75 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSK 75 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEec
Confidence 89999999999999999999999999999999999 99999999999999999999999999999887776643
No 74
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.85 E-value=2e-08 Score=77.85 Aligned_cols=74 Identities=84% Similarity=1.159 Sum_probs=70.1
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
+++.+..|+...+.+.+..+|+.+|.+|+...|+|++.|++.+.|+.|+|+.+|++|+|..++++++..+++++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~~ 75 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRGG 75 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 56777899999999999999999999999999999999999999999999999999999999999999998764
No 75
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.82 E-value=1.2e-08 Score=82.84 Aligned_cols=74 Identities=31% Similarity=0.451 Sum_probs=61.9
Q ss_pred eeeEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCC-------CCCCEEEEEEe
Q 009518 457 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~-~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I-------~~~~~l~l~~~ 528 (533)
|.+|++-...+ ++.+++.++.||.+||.+|+.....||++|+|+.++..|+|++||+|||+ +..+++-|.+|
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 34455433333 45668999999999999999999999999999988888999999999999 77899999888
Q ss_pred cC
Q 009518 529 LR 530 (533)
Q Consensus 529 l~ 530 (533)
..
T Consensus 81 ~~ 82 (119)
T cd01788 81 SS 82 (119)
T ss_pred cC
Confidence 53
No 76
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.82 E-value=2.2e-08 Score=79.99 Aligned_cols=69 Identities=22% Similarity=0.428 Sum_probs=56.5
Q ss_pred eeEEEe-CCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEE-EEcCe-----ec-CCCCcccccCCCCCCEEEEE
Q 009518 458 QIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK-----QL-EDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 458 ~i~v~~-~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L-~~~g~-----~L-~d~~tL~~~~I~~~~~l~l~ 526 (533)
.++|.. .+....+-.++++.||++||.+++..+|+||+.|+| +|.|+ .| +|+++|++||+++|++||+.
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 355553 233344556999999999999999999999999999 47877 56 57789999999999999986
No 77
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.64 E-value=1.4e-07 Score=76.10 Aligned_cols=69 Identities=28% Similarity=0.565 Sum_probs=55.4
Q ss_pred eeEEEeCCC--CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc----Ce---ec-CCCCcccccCCCCCCEEEEE
Q 009518 458 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GK---QL-EDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 458 ~i~v~~~~g--~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~----g~---~L-~d~~tL~~~~I~~~~~l~l~ 526 (533)
.|+|..... ......++++.||++||.+|+..+|+|++.|+|.+. +. .+ +|+++|.+||+.+|++|++.
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 456665443 578889999999999999999999999999999876 22 24 46789999999999999975
No 78
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.63 E-value=9.5e-08 Score=76.31 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=57.9
Q ss_pred EEEEEecC-CcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEE-ecCc-----cc-ccCCccccccccccccceeee
Q 009518 78 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 78 ~i~vk~~~-g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G~-----~L-~d~~~l~~y~i~~~s~i~l~~ 147 (533)
.|+|+... .......++++.||.+||++++...|+||..|+|. |.|+ .| +|+.+|.+|++.+|++||+.-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 45555432 34455669999999999999999999999999995 8887 46 678999999999999999874
No 79
>PLN02560 enoyl-CoA reductase
Probab=98.50 E-value=2.6e-07 Score=91.83 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=62.0
Q ss_pred eeeEEEeCCCCEE---EEEecCCCcHHHHHHHHhhhcCC-CCCcEEEEEc---C----eecCCCCcccccCCCCCCEEEE
Q 009518 457 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 457 m~i~v~~~~g~~~---~~~v~~~~tV~~lK~~I~~~~gi-p~~~q~L~~~---g----~~L~d~~tL~~~~I~~~~~l~l 525 (533)
|+|.|+..+|+.. ++++++++||+|||.+|++..++ ++++|||.+. | +.|+|+++|+++|+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6788998888887 79999999999999999999987 8999999973 3 3789999999999999998876
Q ss_pred E
Q 009518 526 V 526 (533)
Q Consensus 526 ~ 526 (533)
.
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 3
No 80
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.49 E-value=2.5e-07 Score=75.30 Aligned_cols=72 Identities=32% Similarity=0.474 Sum_probs=62.4
Q ss_pred CeEEEEcCCCc-EEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCcccccc-------ccccccceEEE
Q 009518 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 72 (533)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i-------~~~sti~l~~~ 72 (533)
|++|++...-+ ++.+.+++++||.++|++|+.-...|++.|+|+-.+..|+|++||++|++ +...++-|.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 78999987765 66799999999999999999999999999999977888999999999999 44555555554
No 81
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.49 E-value=5.1e-07 Score=67.33 Aligned_cols=72 Identities=28% Similarity=0.404 Sum_probs=64.5
Q ss_pred eeeeeeeccCceEEeeecCCchHHHHHHHhhhhcCCCCCCeEEEeC---C--eecCCCCCcccccCCCCCEEEEEEEe
Q 009518 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRL 225 (533)
Q Consensus 153 ~~i~v~~~~g~~~~i~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~---g--~~L~d~~tl~~y~I~~~s~i~l~~~~ 225 (533)
++|+|+..++..+++.|+|..+|..+|++|...+|++- +|+|.|. | +.|.+..+|++|||..+..|.|+-+.
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~ 77 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETF 77 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecC
Confidence 47899999999999999999999999999999999998 9999996 2 56789999999999999888877553
No 82
>PLN02560 enoyl-CoA reductase
Probab=98.47 E-value=2.3e-07 Score=92.19 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=62.1
Q ss_pred eEEEEEecCCcEE---EEEEcCCCcHHHHHHHHccccCC-CCCCeEEEec---C----cccccCCcccccccccccccee
Q 009518 77 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 145 (533)
Q Consensus 77 ~~i~vk~~~g~~~---~l~v~~~~tV~~lK~~i~~~~gi-p~~~q~L~~~---G----~~L~d~~~l~~y~i~~~s~i~l 145 (533)
|+|+|+..+|+.+ ++++++++||++||++|+++.++ ++++|+|.+. | +.|+|+++|++||+.+++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6789998889887 79999999999999999999986 8999999973 4 3789999999999999998776
Q ss_pred e
Q 009518 146 V 146 (533)
Q Consensus 146 ~ 146 (533)
-
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 3
No 83
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.45 E-value=7.6e-07 Score=74.54 Aligned_cols=75 Identities=29% Similarity=0.492 Sum_probs=56.1
Q ss_pred CeEEEEEecCCc-EEEEEEcCCCcHHHHHHHHccccC-------CCCCCeEEEecCcccccCCccccccccccc------
Q 009518 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------ 141 (533)
Q Consensus 76 ~~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~g-------ip~~~q~L~~~G~~L~d~~~l~~y~i~~~s------ 141 (533)
.+.|.++..+|+ ..++.+++++||++||+.|...+. ..++..+|+|.||.|+|+.+|++|.+..++
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 355666777898 899999999999999999986541 135679999999999999999999987665
Q ss_pred cceeeeeec
Q 009518 142 TLHLVLRLR 150 (533)
Q Consensus 142 ~i~l~~~~~ 150 (533)
++||++++.
T Consensus 82 vmHlvvrp~ 90 (111)
T PF13881_consen 82 VMHLVVRPN 90 (111)
T ss_dssp EEEEEE-SS
T ss_pred EEEEEecCC
Confidence 678877653
No 84
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.6e-06 Score=69.10 Aligned_cols=78 Identities=18% Similarity=0.460 Sum_probs=73.0
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG~ 533 (533)
-+++.|+..+|....+.|..+++...|+..-+++.|++++..|++|+|+.+.+.+|-++.++++|+.|.+.....||+
T Consensus 20 hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 20 HINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred eEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 345667778888899999999999999999999999999999999999999999999999999999999999999995
No 85
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.39 E-value=9.3e-07 Score=71.28 Aligned_cols=70 Identities=27% Similarity=0.544 Sum_probs=56.2
Q ss_pred EEEEEecCC--cEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEec-C------ccc-ccCCccccccccccccceeee
Q 009518 78 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------KQL-EDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 78 ~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-G------~~L-~d~~~l~~y~i~~~s~i~l~~ 147 (533)
.|+|..... ......++++.||.+||.+++...|+|++.|+|.+. . ..+ +|.++|.+|++.+|.+||+.-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 456654443 488899999999999999999999999999999976 1 223 578999999999999999864
No 86
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.39 E-value=8e-07 Score=66.30 Aligned_cols=70 Identities=27% Similarity=0.372 Sum_probs=62.1
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecC-----cccccCCccccccccccccceeee
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G-----~~L~d~~~l~~y~i~~~s~i~l~~ 147 (533)
++|+|+..++..+.+.|+|..+|..+|++|....|++- .|+|.|+- ..|.+..+|++|||..+..|.|+-
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 47999999999999999999999999999999999987 99999972 457899999999998777777654
No 87
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.36 E-value=7.3e-07 Score=70.16 Aligned_cols=71 Identities=28% Similarity=0.426 Sum_probs=45.3
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcC---eec--CCCCcccccCCCCCCEEEEE
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g---~~L--~d~~tL~~~~I~~~~~l~l~ 526 (533)
..|-|.|++.+| .+.+++++++|+.+|+++|++..++|.+.|.|+.+. ..+ .+++||+++|++.||.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 467888999998 578899999999999999999999999999987542 245 46789999999999999874
No 88
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.35 E-value=3.3e-06 Score=70.71 Aligned_cols=74 Identities=30% Similarity=0.504 Sum_probs=55.8
Q ss_pred eeeEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhcC-------CCCCcEEEEEcCeecCCCCcccccCCCCCC------E
Q 009518 457 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------T 522 (533)
Q Consensus 457 m~i~v~~~~g~-~~~~~v~~~~tV~~lK~~I~~~~g-------ip~~~q~L~~~g~~L~d~~tL~~~~I~~~~------~ 522 (533)
+.|..+..+|. ...+.+++++||++||+.|.+.+. ..+...||+|.|+.|+|+.||++|++..|+ +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 34555667898 889999999999999999997762 245678999999999999999999999877 5
Q ss_pred EEEEEecC
Q 009518 523 LHLVLRLR 530 (533)
Q Consensus 523 l~l~~~l~ 530 (533)
+||++|..
T Consensus 83 mHlvvrp~ 90 (111)
T PF13881_consen 83 MHLVVRPN 90 (111)
T ss_dssp EEEEE-SS
T ss_pred EEEEecCC
Confidence 77877643
No 89
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=5.1e-07 Score=98.72 Aligned_cols=72 Identities=35% Similarity=0.607 Sum_probs=69.3
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeec
Q 009518 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~ 150 (533)
.|+|||++.++.++.+...+||.+||+.|.++..|+.+.|+|+|.|+.|.|++++.+|+| +|-+|||+-|+.
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverpp 75 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPP 75 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCC
Confidence 488999999999999999999999999999999999999999999999999999999999 999999998864
No 90
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1e-06 Score=96.51 Aligned_cols=73 Identities=34% Similarity=0.584 Sum_probs=69.7
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEEEEecCC
Q 009518 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~~ 380 (533)
+.|||++.++.++.+...+||.++|..|+.+.+|+.+.|||+|.|++|.|.+++++|+| +|-+|||+.|.+++
T Consensus 5 v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 5 VLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred eeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 77999999999999999999999999999999999999999999999999999999999 99999999886433
No 91
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.24 E-value=2.8e-06 Score=66.76 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=47.2
Q ss_pred cCCCcHHHHHHHHhhhcC-CCCCcEEEE--EcCeecCCCCcccccCCCCCCEEEE
Q 009518 474 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 474 ~~~~tV~~lK~~I~~~~g-ip~~~q~L~--~~g~~L~d~~tL~~~~I~~~~~l~l 525 (533)
+++.||++||..|+...+ .+++.|+|. +.|+.|.|+.+|.+||+.+|++|++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 588999999999999876 589999996 7899999999999999999999886
No 92
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.8e-06 Score=87.53 Aligned_cols=70 Identities=24% Similarity=0.424 Sum_probs=66.1
Q ss_pred eeEEEEecCCcEEEEE-ecCCCcHHHHHHHhhcccCCCCcceeEeecCccccCCccccccccccCCeEEEEE
Q 009518 381 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (533)
Q Consensus 381 ~~i~vk~~~g~~~~~~-v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~~L~~~~i~~~~~l~l~~ 451 (533)
.+|.|| |.|+.|.++ ++.++|+..||+++...|||||++|+++..|+.+.|+..+.+.+|++|.+++|+-
T Consensus 4 ~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG 74 (473)
T KOG1872|consen 4 DTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG 74 (473)
T ss_pred ceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence 457787 999999988 9999999999999999999999999999999999999999999999999999974
No 93
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.13 E-value=3.9e-06 Score=65.95 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=46.5
Q ss_pred cCCCcHHHHHHHHccccC-CCCCCeEEE--ecCcccccCCcccccccccccccee
Q 009518 94 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 145 (533)
Q Consensus 94 ~~~~tV~~lK~~i~~~~g-ip~~~q~L~--~~G~~L~d~~~l~~y~i~~~s~i~l 145 (533)
+++.||++||..|+...+ +++++|+|. +.|+.|.|+.+|++||+.+|+++++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 588999999999998865 589999996 8899999999999999999998775
No 94
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.02 E-value=1.4e-05 Score=59.13 Aligned_cols=64 Identities=45% Similarity=0.670 Sum_probs=59.9
Q ss_pred cCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEEE
Q 009518 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (533)
Q Consensus 312 ~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~ 375 (533)
.+|...++.+.+..|++++|++|+.+.|++++.|.|+++|..+.+...+.+|++.+++.+++..
T Consensus 5 ~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 5 NDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 3788889999999999999999999999999999999999999999999999999999999874
No 95
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.01 E-value=2.7e-05 Score=57.63 Aligned_cols=63 Identities=46% Similarity=0.697 Sum_probs=58.9
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009518 465 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
.|....+.+.++.|++++|.+|..+.|++++.+.|+++|..+.+...+.++++.+++++++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 677888999999999999999999999999999999999999999888999999999998864
No 96
>KOG4261 consensus Talin [Cytoskeleton]
Probab=97.92 E-value=1.4e-06 Score=92.19 Aligned_cols=172 Identities=24% Similarity=0.351 Sum_probs=126.5
Q ss_pred CceEEEEeccCccHHHHHHHhccccC---CCCCceeEEe------ccEEcCCCCcccccccccCCeEEEEEEecCCeeEE
Q 009518 314 GKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 384 (533)
Q Consensus 314 g~~~~~~v~~~~ti~~lK~~i~~~~~---ip~~~q~L~~------~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~~~~i~ 384 (533)
+-+-|+.++|+++|.|-.+.|++++. .-+..+.|+. .|-||++++||.+|-+.+++++.+..+.+ ...
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~r---~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQR---PLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhcc---cce
Confidence 56678999999999999999998775 2366677766 58999999999999999999999986554 578
Q ss_pred EEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEeecCccccCCccccccccccCCeEEEEEEecCCeeeEEEeC
Q 009518 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTL 464 (533)
Q Consensus 385 vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~~L~~~~i~~~~~l~l~~~~~~~m~i~v~~~ 464 (533)
|+|++|...++.+.++.+|.+|.-.|+.+.||..+. +|.+..+....=-....++..+..++.
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igItnye-----------------eyslvre~~~~~~~~~tgtl~~~~~~m 151 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYE-----------------EYSLVREDIEEQNEEGTGTLNLKRKLM 151 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCccchh-----------------hhhhhHHHHHHhcCCCCceEEeehhHH
Confidence 999999999999999999999999999999987765 333221111000000001111111111
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEE
Q 009518 465 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l 525 (533)
......+.||+++......+| |+..+||.+-||....|+++
T Consensus 152 ---------~~~~kme~Lkkkl~td~el~w-----------ld~~rtlreqgide~et~ll 192 (1003)
T KOG4261|consen 152 ---------RKERKMEKLRKKLHTDDELNW-----------LDHSRTLREQGIDEEETLLL 192 (1003)
T ss_pred ---------HhhhhhHHHHhhcccchhhhh-----------HHHhHHHHhcCccHHHHHHH
Confidence 222378889999888877777 78888888888887766554
No 97
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=3.8e-06 Score=60.65 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=62.7
Q ss_pred eeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 009518 458 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 458 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~ 526 (533)
++.+...-|+...+++.+++||.|+|+.|++.+|..++...|--|+..+.|.-+|++|.|.+|..+.|-
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 445566778999999999999999999999999999999999999999999999999999999888764
No 98
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.86 E-value=2e-05 Score=61.98 Aligned_cols=71 Identities=28% Similarity=0.426 Sum_probs=42.9
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecC---ccc--ccCCccccccccccccceee
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 146 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G---~~L--~d~~~l~~y~i~~~s~i~l~ 146 (533)
+.|-|.|++.+| .+.+++++++|+.+|+++|++..++|++.|.|+.+. ..+ .++++|+++|++.|+.++|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 357777877765 457789999999999999999999999999886432 345 46899999999999998874
No 99
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=0.00014 Score=58.25 Aligned_cols=76 Identities=17% Similarity=0.448 Sum_probs=68.7
Q ss_pred eeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCC
Q 009518 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (533)
Q Consensus 229 ~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~ 304 (533)
+++.|+..++.++.|.|+.+.....|....+++.|++.+..||.|+|+.+.+..|.++.++.+||.|.++....+|
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 4556777788899999999999999999999999999999999999999999999999999999999887655443
No 100
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=2.8e-05 Score=74.39 Aligned_cols=63 Identities=33% Similarity=0.651 Sum_probs=58.7
Q ss_pred cEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceee-eee
Q 009518 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 149 (533)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~-~~~ 149 (533)
..++++|+.+..|.+||+-++...|+|+++.+++|+||+|.|+.++..+.+..-|.+|++ +||
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 468999999999999999999999999999999999999999999999999999999887 455
No 101
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.80 E-value=4.8e-05 Score=56.99 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=49.2
Q ss_pred EEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEE
Q 009518 309 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 373 (533)
Q Consensus 309 v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l 373 (533)
|..+++++.++.+.|++|+.++=+..|.++|++++++.|.|+++.|+-+.+++--|+++|+.|.|
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 34688999999999999999999999999999999999999999999999999999999999876
No 102
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.73 E-value=3.4e-05 Score=60.51 Aligned_cols=51 Identities=31% Similarity=0.423 Sum_probs=44.6
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEE-cC-eecCCCCcccccCCC
Q 009518 468 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQ 518 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~-~g-~~L~d~~tL~~~~I~ 518 (533)
++.++..++.||.+||.+++....-|+++|+|+. .. ..|+|++||+|||..
T Consensus 13 tif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 13 TIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 4566899999999999999999999999999987 43 567899999999654
No 103
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.6e-05 Score=57.50 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=61.0
Q ss_pred eEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEeecCccccCCccccccccccCCeEEEE
Q 009518 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (533)
Q Consensus 382 ~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~~L~~~~i~~~~~l~l~ 450 (533)
.+.+++.-|+...++.++++||+|+|+.|..++|-.+++-.|...+..++|.-+|++|.+..|..+.|-
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 445667789999999999999999999999999999998888877788999999999999998887663
No 104
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00011 Score=56.98 Aligned_cols=78 Identities=17% Similarity=0.359 Sum_probs=72.6
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG~ 533 (533)
-+.+.|..++|....+++..+.+...|....+.+.|-..+..|++|+|+.++.++|.+|+++++++.|.++....||+
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 456667778899999999999999999999999999999999999999999999999999999999999999999984
No 105
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.52 E-value=0.00047 Score=60.97 Aligned_cols=76 Identities=30% Similarity=0.517 Sum_probs=60.4
Q ss_pred eeeEEEeCCC----CEEEEEecCCCcHHHHHHHHhhhcCCCCCcE-EEEEc-Ceec--CCCCcccccCCCCC----CEEE
Q 009518 457 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQKE----STLH 524 (533)
Q Consensus 457 m~i~v~~~~g----~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q-~L~~~-g~~L--~d~~tL~~~~I~~~----~~l~ 524 (533)
|+|+|.+.+| .+..+.++++.||.+|+..|.+..++|...| .|++. ++.| .++..+..+.-.+. -+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 6799999999 5888999999999999999999999999885 56553 5555 34555666544333 4789
Q ss_pred EEEecCCC
Q 009518 525 LVLRLRGG 532 (533)
Q Consensus 525 l~~~l~GG 532 (533)
|.+|++||
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 99999999
No 106
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00023 Score=68.30 Aligned_cols=70 Identities=30% Similarity=0.599 Sum_probs=59.2
Q ss_pred eeeEEEeC---CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 009518 457 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 457 m~i~v~~~---~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~ 526 (533)
|.++|+.. ....+.++|+.+..|.+||+.++.+.|+|+++-+++|.||+|.|+.|+..|.+..-+.+|++
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 34555532 22346778999999999999999999999999999999999999999999888888888765
No 107
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00047 Score=70.29 Aligned_cols=71 Identities=24% Similarity=0.425 Sum_probs=65.1
Q ss_pred EEEEEecCCcEEEEE-EcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeee
Q 009518 78 QIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 78 ~i~vk~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~ 149 (533)
.|.|| +.|+.++++ ++.++|+..+|+++....|+||++|++.+.|+.+.|+-......|++|.+++++...
T Consensus 5 ~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~ 76 (473)
T KOG1872|consen 5 TVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTA 76 (473)
T ss_pred eEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeeccc
Confidence 35666 889999999 999999999999999999999999999999999999988888999999999998754
No 108
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.21 E-value=0.00041 Score=54.56 Aligned_cols=62 Identities=29% Similarity=0.435 Sum_probs=53.7
Q ss_pred CeEEEEcCCC-cEEEEEecCcccHHHHHHHHHhhhCCCCccceEEE-cc-EEcCCCCCccccccc
Q 009518 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQ 62 (533)
Q Consensus 1 ~~i~~~~~~g-~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~-~g-~~L~~~~tl~~y~i~ 62 (533)
|++|++.-.- .++.+..++|.||.++|.++..-..=|++.|+|+. .- +.|+|++||++++..
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 6788887665 46679999999999999999999999999999988 33 578999999999764
No 109
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=96.97 E-value=0.0027 Score=47.56 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.2
Q ss_pred eCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEE
Q 009518 463 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 463 ~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l 525 (533)
..+++...+.|.|+.++.++-+....++|+++++-.|.|+++.|+-+.+..-.|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 456788999999999999999999999999999999999999999999999999999999875
No 110
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.82 E-value=0.0031 Score=49.69 Aligned_cols=68 Identities=22% Similarity=0.396 Sum_probs=47.4
Q ss_pred eeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCc------EEEE-EcCeecCCCCcccccCCCCCCEEEE
Q 009518 458 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ------QRLI-FAGKQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 458 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~------q~L~-~~g~~L~d~~tL~~~~I~~~~~l~l 525 (533)
.|.|....|+.+.+.++.+.+|++|...|-+..+.+... -.|. -+|.+|+++.||+++||.+|+.|.|
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 355555456889999999999999999999988874433 2333 4688999999999999999999886
No 111
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.43 E-value=0.0085 Score=47.16 Aligned_cols=68 Identities=24% Similarity=0.405 Sum_probs=48.8
Q ss_pred eEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCC------CeeEE-ecCccccCCccccccccCCCceEEE
Q 009518 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 297 (533)
Q Consensus 230 ~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~------~q~L~-~~g~~L~d~~tl~~~~i~~~~ti~l 297 (533)
.|.|...+|+.+-+.+..+-+|.+|...|.+.++.+.. ...|. -+|..|++++||+++||.+|+.+.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 45555555789999999999999999999998886332 25566 6889999999999999999999976
No 112
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.33 E-value=0.029 Score=44.39 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=60.4
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCc-EEEE--EcCeecCCC--CcccccCCCCCCEEEEE
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 526 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~-q~L~--~~g~~L~d~--~tL~~~~I~~~~~l~l~ 526 (533)
....|.|+..+|+...-...+++||++|...|......+... ..|. |-.+.+.++ .||++.|+.+.++|.|.
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 346788899999999999999999999999999998777765 7775 456777643 69999999999998874
No 113
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.18 E-value=0.0094 Score=48.68 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=44.0
Q ss_pred EEEEecCC-cEEEEEEc--CCCcHHHHHHHHccccC--CCCCCeEEEecCcccccCCccccc
Q 009518 79 IFVKTLTG-KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 135 (533)
Q Consensus 79 i~vk~~~g-~~~~l~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~G~~L~d~~~l~~y 135 (533)
|+|+..++ ..+.+++. .+.||..||..|.+..+ ..-.+++|+|+|+.|.|+..|+..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 45555543 34777777 78999999999998873 344678999999999998777754
No 114
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.07 E-value=0.021 Score=50.69 Aligned_cols=63 Identities=22% Similarity=0.409 Sum_probs=49.4
Q ss_pred eEEEEEecCC----cEEEEEEcCCCcHHHHHHHHccccCCCCCCe-EEEec-Cccc--ccCCccccccccc
Q 009518 77 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQK 139 (533)
Q Consensus 77 ~~i~vk~~~g----~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~L~~~-G~~L--~d~~~l~~y~i~~ 139 (533)
|+|+|+++.| .++.+.++++.||.+|+.+|....++|+..| .|.+. |+.| .++..++.+.-.+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~ 71 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSS 71 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCc
Confidence 5899999999 6899999999999999999999999998885 45553 5565 4555666655433
No 115
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.025 Score=44.21 Aligned_cols=69 Identities=14% Similarity=0.366 Sum_probs=62.6
Q ss_pred eeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEE
Q 009518 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (533)
Q Consensus 229 ~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l 297 (533)
++..|...+|.++.+.++...+...|-.....+.|=..+..|+.|+|+.++-++|..+.++.+++.|..
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa 93 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA 93 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence 455567788999999999999999999999999998889999999999999999999999999988743
No 116
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=95.56 E-value=0.084 Score=41.69 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=59.4
Q ss_pred cceeeeeeeccCceEEeeecCCchHHHHHHHhhhhcCCCCCC-eEEE--eCCeecCCC--CCcccccCCCCCEEEEE
Q 009518 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 222 (533)
Q Consensus 151 ~~~~i~v~~~~g~~~~i~v~~~dtV~~lK~~i~~~~gip~~~-q~L~--~~g~~L~d~--~tl~~y~I~~~s~i~l~ 222 (533)
....|.|+..+|+.+.-...+++||.+|...|......+... ..|+ |-.+.+.++ .+|.+.|+.++++|+|.
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 346788889999999999999999999999999887766654 7776 446777543 69999999999999874
No 117
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.56 E-value=0.081 Score=41.64 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=58.1
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeecCC---CCcccccCCCCCCEEEEE
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 526 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~d---~~tL~~~~I~~~~~l~l~ 526 (533)
...|.|+..+|+...-....++||++|.+.|....+.+.....|. |-.+.+.+ +.||.+.|+...++|.|.
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence 456888999999999999999999999999977677777778885 45566753 479999999988887663
No 118
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.014 Score=53.27 Aligned_cols=63 Identities=29% Similarity=0.431 Sum_probs=57.4
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceee
Q 009518 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (533)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~ 146 (533)
.+++.+.+.+...+||.++|.++++..|+.+..|+++|+|+.|-|...|..|+|..|+...+.
T Consensus 154 tT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlq 216 (231)
T KOG0013|consen 154 TTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQ 216 (231)
T ss_pred hhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEE
Confidence 357789999999999999999999999999999999999999999999999999999755543
No 119
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=95.35 E-value=0.08 Score=41.69 Aligned_cols=70 Identities=21% Similarity=0.243 Sum_probs=56.3
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEE--ecCccccc---CCcccccccccccccee
Q 009518 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 145 (533)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L~d---~~~l~~y~i~~~s~i~l 145 (533)
...|-||.++|+.+.-...+++|+.++.+-+....+.+.....|+ |-.+.+.+ +.+|.+.++.+++++.+
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 456888999999999999999999999999966666665566676 55677753 47999999988887765
No 120
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.30 E-value=0.13 Score=40.10 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=53.1
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeecCC---CCcccccCCCCCCEEEE
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 525 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~d---~~tL~~~~I~~~~~l~l 525 (533)
...|.|+..+|+...-....++||++|...|.....- .....|. |-.+.+.+ +.||.+.|+.+ +.+.+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~ 74 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQ 74 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEE
Confidence 4568889999999999999999999999999877543 5567775 34566754 77999999994 55544
No 121
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=95.17 E-value=0.041 Score=44.96 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=38.5
Q ss_pred ceEEeeec--CCchHHHHHHHhhhhcC--CCCCCeEEEeCCeecCCCCCcccc
Q 009518 163 KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 211 (533)
Q Consensus 163 ~~~~i~v~--~~dtV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tl~~y 211 (533)
..+++++. ...||..||+.|.+..+ ..-..++|||+|+.|.|...|+.-
T Consensus 12 pDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 12 PDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred CCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 34666666 77899999999999873 334568999999999998776653
No 122
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=95.14 E-value=0.035 Score=52.04 Aligned_cols=69 Identities=28% Similarity=0.373 Sum_probs=50.5
Q ss_pred eeeEEEeCCC--CEEEEEecCCCcHHHHHHHHhhh-cCCCCCcEEEE----EcCeecCCCCcccccCCCCCCEEEE
Q 009518 457 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDK-EGIPPDQQRLI----FAGKQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 457 m~i~v~~~~g--~~~~~~v~~~~tV~~lK~~I~~~-~gip~~~q~L~----~~g~~L~d~~tL~~~~I~~~~~l~l 525 (533)
|.|++...++ .......+..+|++|+++++..+ ..+.+..+|+. -+|++|-|+++|++|+..+|+++++
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 5566665544 22335667889999999666555 57777666554 3799999999999999999987765
No 123
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.14 E-value=0.12 Score=40.50 Aligned_cols=67 Identities=22% Similarity=0.296 Sum_probs=54.0
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCC-CCCcEEEE--EcCeecCC-CCcccccCCCCCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKES 521 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gi-p~~~q~L~--~~g~~L~d-~~tL~~~~I~~~~ 521 (533)
+...|.|+..+|+.....+..++||++|...|....+- ....+.|. |-.+.|.| +.||.|.|+.+.+
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~ 73 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAV 73 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcE
Confidence 45678899999999999999999999999999987543 23567775 56777864 7799999998643
No 124
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.034 Score=50.83 Aligned_cols=64 Identities=28% Similarity=0.428 Sum_probs=56.6
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009518 465 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
+++.+-+.+..-+|+.++|.++.+..|+.+..|+|+|.|..|-|...|.+|+|+.|..-.+-++
T Consensus 155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqvi 218 (231)
T KOG0013|consen 155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQVI 218 (231)
T ss_pred hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEEE
Confidence 4556788889999999999999999999999999999999999999999999999965554443
No 125
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.97 E-value=0.11 Score=39.31 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=55.5
Q ss_pred eeEEEccCCceEEEEeccCccHHHHHHHhccccCC--CCC---ceeEEeccEEcCCCCcccccccccCCeEEE
Q 009518 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPD---QQRLIFAGKQLEDGRTLADYNIQKESTLHL 373 (533)
Q Consensus 306 ~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~i--p~~---~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l 373 (533)
.+-.+.++|.++.+.+....+|..+-....+.+.| ++. +-+.+-+++.|++++.|.+|+|.+|+.|.+
T Consensus 8 TvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 8 TVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 34457799999999999999999999888765443 332 345666899999999999999999999875
No 126
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=94.89 E-value=0.12 Score=40.53 Aligned_cols=65 Identities=23% Similarity=0.322 Sum_probs=51.5
Q ss_pred EEccCCceEEEEeccCccHHHHHHHhccccCCCCCce-eEEe------ccEEcCCCCcccccccccCCeEEE
Q 009518 309 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIF------AGKQLEDGRTLADYNIQKESTLHL 373 (533)
Q Consensus 309 v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q-~L~~------~g~~L~~~~tl~~y~i~~~~~l~l 373 (533)
|..++|...++.+++++|+.++-++|++++|+.-..+ .|.| ...+|+.+++|.++...+.....+
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l 72 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTL 72 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEE
Confidence 5578899999999999999999999999999964443 4777 258999999999998773444333
No 127
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=94.67 E-value=0.2 Score=39.12 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=43.7
Q ss_pred eEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEE
Q 009518 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (533)
Q Consensus 240 ~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~ 298 (533)
.+...++-...+..||..++.+.++..+.+.+...+..|+++++|.+.|++-+.++.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence 45667788889999999999999999999999999988999999999999999998764
No 128
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=94.60 E-value=0.22 Score=38.80 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=51.2
Q ss_pred eeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEe--ecCcccc---CCccccccccccCCeEEE
Q 009518 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 449 (533)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~--~~g~~l~---d~~~L~~~~i~~~~~l~l 449 (533)
..|.|+..+|+.+.-..+.++|+++|.+-|.....- ...-.|. |+.+.+. .+.||.+.|+. .+.+.+
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~ 74 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQ 74 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEE
Confidence 468899999999999999999999999999876543 2223344 6777764 48999999998 455444
No 129
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.49 E-value=0.26 Score=38.71 Aligned_cols=69 Identities=16% Similarity=0.312 Sum_probs=55.3
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeecCC---CCcccccCCCCCCEEEEE
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 526 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~d---~~tL~~~~I~~~~~l~l~ 526 (533)
..|.|+..+|+...-....++|++++.+.|+...+-+ ....|. |-.+.+.+ +.||.+.|+.+.++|.|.
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 4678899999999999999999999999999765443 456665 45667753 479999999999888764
No 130
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=94.45 E-value=0.26 Score=47.99 Aligned_cols=106 Identities=17% Similarity=0.345 Sum_probs=74.3
Q ss_pred EEeccCccHHHHHHHhccccCCCCCceeEEec------cEEcCCCCcccccccccCCeEEEEEEec--------------
Q 009518 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLR-------------- 378 (533)
Q Consensus 319 ~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~------g~~L~~~~tl~~y~i~~~~~l~l~~~~~-------------- 378 (533)
+.|+..++|+++-..|+++.|.|++..-++|- =..++...|+....+.+||+|.......
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 56789999999999999999999999888883 2557899999999999999999886442
Q ss_pred ------CCeeEEEEec---CCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEe
Q 009518 379 ------GGMQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424 (533)
Q Consensus 379 ------~~~~i~vk~~---~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~ 424 (533)
..+.|.++.. .+..+++.++..+|-.+|-+.|.+.+++.|..-++.
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 1134555442 335789999999999999999999999999887766
No 131
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.20 E-value=0.25 Score=39.32 Aligned_cols=69 Identities=12% Similarity=0.162 Sum_probs=57.1
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecc--EEcC--------CCCcccccccccCCeEEEE
Q 009518 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE--------DGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g--~~L~--------~~~tl~~y~i~~~~~l~l~ 374 (533)
..|-++.++|..+.-.++.++|+++|.+-|.. .+-.++.+.|+.+= +.+. .+.||.+-|+.+..+|.+.
T Consensus 5 ~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~ 83 (85)
T cd01774 5 VKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ 83 (85)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence 45778899999999999999999999999964 45566789998854 5664 4789999999988888764
No 132
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.18 E-value=0.42 Score=37.62 Aligned_cols=73 Identities=15% Similarity=0.263 Sum_probs=60.6
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEE--cCeecC---CCCcccccCCCCCCEEEEEEe
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~---d~~tL~~~~I~~~~~l~l~~~ 528 (533)
+.-+|.|+..+|+...-....++++++|-..+.+ .|.+++.+.|+- =-+.+. .+.||.+.|+.+.++|.|.-|
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence 4567899999999999999999999999999999 578888888863 344553 357999999999999988654
No 133
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.08 E-value=0.2 Score=37.85 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=56.2
Q ss_pred eeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCC-----cceeEeecCccccCCccccccccccCCeEEE
Q 009518 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (533)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~-----~~q~l~~~g~~l~d~~~L~~~~i~~~~~l~l 449 (533)
+++-.+.|+|.+|.+.++...++..|-....+-+.+.. +.-+.+-+++.|.++..|++|++-+|+.+.+
T Consensus 7 VTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 7 VTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 46677899999999999999999999888887665443 2333446778899999999999999998765
No 134
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.93 E-value=0.49 Score=37.69 Aligned_cols=70 Identities=11% Similarity=0.178 Sum_probs=56.5
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc--CeecC--------CCCcccccCCCCCCEEEE
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE--------DGRTLADYNIQKESTLHL 525 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~--g~~L~--------d~~tL~~~~I~~~~~l~l 525 (533)
..+|.++..+|+...-....++||++|..-|.+. +-.++...|..+ -+.+. .+.||.+.|+.+..+|.+
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V 82 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFV 82 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEE
Confidence 4678889999998888999999999999999765 456678888754 35665 356999999999888776
Q ss_pred E
Q 009518 526 V 526 (533)
Q Consensus 526 ~ 526 (533)
.
T Consensus 83 ~ 83 (85)
T cd01774 83 Q 83 (85)
T ss_pred e
Confidence 4
No 135
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.72 E-value=0.42 Score=37.50 Aligned_cols=68 Identities=21% Similarity=0.287 Sum_probs=52.5
Q ss_pred CeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCC-CCCeeEE--ecCccc-cCCccccccccCCCceE
Q 009518 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI--FAGKQL-EDGRTLADYNIQKESTL 295 (533)
Q Consensus 228 ~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip-~~~q~L~--~~g~~L-~d~~tl~~~~i~~~~ti 295 (533)
...|.|+.++|+++......++||++|.+.|....+-+ ...+.|. |=.+.+ +++.||.+.|+.+...+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 45678999999999999999999999999999876432 2446665 445555 45889999999975443
No 136
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.68 E-value=0.34 Score=38.03 Aligned_cols=69 Identities=16% Similarity=0.312 Sum_probs=54.5
Q ss_pred eeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEe--ecCccccC---CccccccccccCCeEEEE
Q 009518 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 450 (533)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~--~~g~~l~d---~~~L~~~~i~~~~~l~l~ 450 (533)
..|.|+..+|+.+.-..+.++|+.+|.+-+....+-+ ..-.|. |+.+.+.+ +.||.+.|+.+..+|.+.
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 4678899999999999999999999999998765433 223344 77777743 589999999988887763
No 137
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.64 E-value=0.54 Score=36.96 Aligned_cols=72 Identities=19% Similarity=0.263 Sum_probs=59.0
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeecC---CCCcccccCCCCCCEEEEEE
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~~~I~~~~~l~l~~ 527 (533)
+..+|.++..+|+...-....++++++|..-|... |.+++..+|. |=-+.+. .+.||.+.|+....+|.+.-
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Vee 79 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEE 79 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEc
Confidence 34678889999998889999999999999999885 7788888886 3344563 35699999999999888754
No 138
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=93.44 E-value=0.66 Score=43.95 Aligned_cols=124 Identities=20% Similarity=0.276 Sum_probs=63.9
Q ss_pred cEEEEEecCCCcHHHHHHHhhcccCCCCc-ceeEe----ecCc---cccCCccccccccccCCeEEEEEEe------c--
Q 009518 391 KTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI----FAGK---QLEDGRTLADYNIQKESTLHLVLRL------R-- 454 (533)
Q Consensus 391 ~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~-~q~l~----~~g~---~l~d~~~L~~~~i~~~~~l~l~~~~------~-- 454 (533)
+.+.+.++.+.||.||...++.+.+++.+ .+++. ++++ .+..+.++... .....+++-.-+ .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 35788999999999999999999998776 33443 3443 36777777776 222233332111 1
Q ss_pred --CCeeeEEEeC-------CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcE-----EEEEcC-----eecCCCC--ccc
Q 009518 455 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-----RLIFAG-----KQLEDGR--TLA 513 (533)
Q Consensus 455 --~~m~i~v~~~-------~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q-----~L~~~g-----~~L~d~~--tL~ 513 (533)
..+-|.|... -|-++.+.|.+++|..++|.+|++++|++-..+ -+.-++ ..++|+. .|.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF~K~Kfaiv~~~~~~~~~yl~d~~~~il~ 191 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEFEKWKFAIVQNSRYSKPRYLEDDDDLILF 191 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHHTT-EEEEEETTEE---EE--TT-T----
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhheeEEEEEEecCCcccceeccccchhhhh
Confidence 1244555432 156789999999999999999999999986544 233333 4566654 555
Q ss_pred ccC
Q 009518 514 DYN 516 (533)
Q Consensus 514 ~~~ 516 (533)
+--
T Consensus 192 ~~~ 194 (213)
T PF14533_consen 192 DEI 194 (213)
T ss_dssp GGG
T ss_pred hhh
Confidence 543
No 139
>PRK06437 hypothetical protein; Provisional
Probab=93.29 E-value=0.74 Score=34.83 Aligned_cols=59 Identities=20% Similarity=0.404 Sum_probs=47.3
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 465 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.++...++++...||++|-+.+ |+++....+..+|..+. .++-+++|+.|.+.-...||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 3455778888889999988664 88888888889999997 45556679999988877776
No 140
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=92.91 E-value=0.61 Score=44.23 Aligned_cols=102 Identities=21% Similarity=0.295 Sum_probs=56.5
Q ss_pred cEEEEEEcCCCcHHHHHHHHccccCCCCC---CeEEE--ecCc---ccccCCccccccccccccceeeeee------c--
Q 009518 87 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRL------R-- 150 (533)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~---~q~L~--~~G~---~L~d~~~l~~y~i~~~s~i~l~~~~------~-- 150 (533)
+.+.+.|+.+.||.+|.++++.+.+++.. ..+++ ++++ .+..+.++.+. .+...+.+-.-+ .
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 35889999999999999999999998765 33333 4554 35666666655 222223322111 1
Q ss_pred --cceeeeeeec-------cCceEEeeecCCchHHHHHHHhhhhcCCCC
Q 009518 151 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPP 190 (533)
Q Consensus 151 --~~~~i~v~~~-------~g~~~~i~v~~~dtV~~lK~~i~~~~gip~ 190 (533)
+...|.|-.. -|-+|.+.|.++.|..++|++|+++.|+|.
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~ 160 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSD 160 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---H
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCCh
Confidence 2233443322 266788999999999999999999999985
No 141
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=92.52 E-value=0.9 Score=35.79 Aligned_cols=72 Identities=15% Similarity=0.299 Sum_probs=59.8
Q ss_pred CCeeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEe--ecCccc---cCCccccccccccCCeEEEEE
Q 009518 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 451 (533)
Q Consensus 379 ~~~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~--~~g~~l---~d~~~L~~~~i~~~~~l~l~~ 451 (533)
+...|.|+..+|+...-..+.++|+.+|-.-+.. .|.+++.-.|+ |+.+.+ +.+.||.+.|+.+..+|.+..
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 3457889999999999999999999999999998 47788877887 777766 345899999999988887643
No 142
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=0.42 Score=43.80 Aligned_cols=58 Identities=19% Similarity=0.381 Sum_probs=48.5
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEEE-EEcC-----eecC-CCCcccccCCCCCCEEEEE
Q 009518 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAG-----KQLE-DGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 469 ~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L-~~~g-----~~L~-d~~tL~~~~I~~~~~l~l~ 526 (533)
...+.+++.||++||.+++-.+|.+++...| +|+| ..|. ++..|..|+..+|..||++
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 4456788999999999999999999999988 4555 2565 5678999999999988875
No 143
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=91.99 E-value=1.4 Score=33.60 Aligned_cols=66 Identities=12% Similarity=0.195 Sum_probs=49.4
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
|+|.+.... ....++++...||++|-+.+ ++++..-.+..+|..+.. +.-+++|+.|.+.-...||
T Consensus 5 m~v~vng~~-~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 5 IRVKVIGRG-IEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred EEEEEeccc-cceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 555554332 24678888899999998776 677777777889999864 4446679999998888887
No 144
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=91.79 E-value=1.1 Score=35.13 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=57.6
Q ss_pred CCeeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEe--ecCcccc---CCccccccccccCCeEEEE
Q 009518 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 450 (533)
Q Consensus 379 ~~~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~--~~g~~l~---d~~~L~~~~i~~~~~l~l~ 450 (533)
+...|.|++.+|+...-..+.++|+++|-.-+... |.++..-+|+ |+.+.+. .+.||.+.|+.+..+|.+-
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 34578899999999999999999999999999875 6666666676 7777763 3679999999888877663
No 145
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=91.66 E-value=0.25 Score=46.58 Aligned_cols=69 Identities=28% Similarity=0.386 Sum_probs=52.8
Q ss_pred eeEEEccC-CceEE-EEeccCccHHHHH-HHhccccCCCCCceeEEe----ccEEcCCCCcccccccccCCeEEEE
Q 009518 306 QIFVKTLT-GKTIT-LEVESSDTIDNVK-AKIQDKEGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 306 ~i~v~~~~-g~~~~-~~v~~~~ti~~lK-~~i~~~~~ip~~~q~L~~----~g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
.|++..-+ |..++ ...+.+.|+.|++ +.+++...+-+..+|+.+ +|+.|-++.+|++|+..+++++.+.
T Consensus 2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 34444433 34455 5567899999999 555678888887787776 6999999999999999999888876
No 146
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=91.63 E-value=0.71 Score=44.90 Aligned_cols=107 Identities=16% Similarity=0.332 Sum_probs=71.5
Q ss_pred EEeecCccHHHHHHHhhhhcCCCCCCeeEEecC------ccccCCccccccccCCCceEEEEEeecC-------------
Q 009518 243 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLRG------------- 303 (533)
Q Consensus 243 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g------~~L~d~~tl~~~~i~~~~ti~l~~~~~~------------- 303 (533)
+.|...++|.++-..|.++.|+|++...+.|.. +.++...|+....+.+||.|.+......
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 667899999999999999999999988887732 3478899999999999999977653321
Q ss_pred -------CceeEE-E--ccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEe
Q 009518 304 -------GMQIFV-K--TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349 (533)
Q Consensus 304 -------~~~i~v-~--~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~ 349 (533)
.+.+.+ . ...+..+++.++...|-.++.++|.+.++++|..-||+-
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~ 224 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT 224 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 122222 2 345568999999999999999999999999998666654
No 147
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=91.55 E-value=0.61 Score=36.44 Aligned_cols=60 Identities=20% Similarity=0.333 Sum_probs=44.3
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009518 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 469 ~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
+...++-.+++..||..++.+.++..+.-.++.....|+++++|-|.+|+-.-++.+.+-
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred EEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 445677889999999999999999999999999998899999999999998888888764
No 148
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=91.07 E-value=0.91 Score=35.36 Aligned_cols=59 Identities=14% Similarity=0.232 Sum_probs=46.5
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCC----CCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 469 ITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 469 ~~~~v~~~~tV~~lK~~I~~~~gi----p~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..++++...||.+|...+....+- ......+..+|+.... +.-+.+|+.|.+.-+..||
T Consensus 18 ~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~-----~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 18 EELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRL-----DTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred EEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCC-----CcccCCCCEEEEeCCCCCC
Confidence 566777789999999999987542 3445667789998873 4457789999999999998
No 149
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=90.60 E-value=0.52 Score=36.20 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=40.7
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecc
Q 009518 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 351 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g 351 (533)
+.|-.++|..-++.+.|+.|+.|+=++++++.|++|....++..|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 346678999999999999999999999999999999999988864
No 150
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=90.13 E-value=1.1 Score=35.25 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=48.3
Q ss_pred eeeEEEeC------CC-CEEEEEecCCCcHHHHHHHHhhhcC-CCC--CcEEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 009518 457 MQIFVKTL------TG-KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 457 m~i~v~~~------~g-~~~~~~v~~~~tV~~lK~~I~~~~g-ip~--~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~ 526 (533)
|.|.|+.. .| ....++++...||++|...+..... +.. ..-.+..||+...++ .-+++|++|.+.
T Consensus 2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~-----~~l~dgDeVai~ 76 (82)
T PLN02799 2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTES-----AALKDGDELAII 76 (82)
T ss_pred eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCC-----cCcCCCCEEEEe
Confidence 55556542 24 4567788889999999999977651 111 112456688876544 346679999999
Q ss_pred EecCCC
Q 009518 527 LRLRGG 532 (533)
Q Consensus 527 ~~l~GG 532 (533)
-+..||
T Consensus 77 PpvsGG 82 (82)
T PLN02799 77 PPISGG 82 (82)
T ss_pred CCCCCC
Confidence 999888
No 151
>smart00455 RBD Raf-like Ras-binding domain.
Probab=90.10 E-value=0.62 Score=35.60 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=39.9
Q ss_pred EEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecc
Q 009518 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 351 (533)
Q Consensus 308 ~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g 351 (533)
.|-.++|+..++.+.|+.|+.|+=+.++++.|+.|+...++..|
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 35578999999999999999999999999999999988888754
No 152
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=89.91 E-value=1.4 Score=31.99 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=42.5
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
|+|++.. ..+++..+.|+.+||.++... .=.|+++|-+..++..|.+ ||.|.+.-|
T Consensus 1 M~I~vN~-----k~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d~~L~e-----~D~v~~Ikk 56 (57)
T PF14453_consen 1 MKIKVNE-----KEIETEENTTLFELRKESKPD------ADIVILNGFPTKEDIELKE-----GDEVFLIKK 56 (57)
T ss_pred CEEEECC-----EEEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCccccCC-----CCEEEEEeC
Confidence 5566653 457888999999999997753 3378999999988877765 888877643
No 153
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=89.83 E-value=0.59 Score=36.35 Aligned_cols=56 Identities=23% Similarity=0.334 Sum_probs=46.3
Q ss_pred ecCCCcHHHHHHHHhhhcC-CCCCcEEEEEcCeecCCCCcccccC-CCCCCEEEEEEe
Q 009518 473 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADYN-IQKESTLHLVLR 528 (533)
Q Consensus 473 v~~~~tV~~lK~~I~~~~g-ip~~~q~L~~~g~~L~d~~tL~~~~-I~~~~~l~l~~~ 528 (533)
|+++++|.|+++.+..... -.-.+..|.++|+.|+|...|++.. +++|++|.++..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 5789999999999998754 4566778999999999888887764 888999988754
No 154
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=88.96 E-value=1.3 Score=40.75 Aligned_cols=92 Identities=16% Similarity=0.265 Sum_probs=64.3
Q ss_pred EEEEEcCCCcHHHHHHHHccccCCCCCCeEEE-ecC-----cccc-cCCccccccccccccceeeeeeccceeeeeeecc
Q 009518 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLT 161 (533)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G-----~~L~-d~~~l~~y~i~~~s~i~l~~~~~~~~~i~v~~~~ 161 (533)
...+.+++.||++||.|++-..|.+++...|. |.| ..|+ ++..|..|...+|-.||++-.....+.= +.+
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~~~~~~~~---~~d 91 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDSNAQSISN---TED 91 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEecCcccccc---ccc
Confidence 45567899999999999999999999999886 655 3464 5789999999999999987644333211 111
Q ss_pred -C--ceEEee----ecCCchHHHHHHHhh
Q 009518 162 -G--KTITLE----VESSDTIDNVKAKIQ 183 (533)
Q Consensus 162 -g--~~~~i~----v~~~dtV~~lK~~i~ 183 (533)
+ ..+.+. ...+|||...|++-.
T Consensus 92 ~s~veky~iSee~Y~qRtdSvr~~kk~~~ 120 (234)
T KOG3206|consen 92 ESIVEKYEISEEDYLQRTDSVRRFKKKHG 120 (234)
T ss_pred cccceeeecCHHHHhhhhHHHHHHHHHhc
Confidence 1 112221 235678998887654
No 155
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=87.91 E-value=0.93 Score=35.24 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=44.6
Q ss_pred eecCccHHHHHHHhhhhcC-CCCCCeeEEecCccccCCcccccc-ccCCCceEEEEEe
Q 009518 245 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLR 300 (533)
Q Consensus 245 v~~~~tV~~lK~~I~~~~g-ip~~~q~L~~~g~~L~d~~tl~~~-~i~~~~ti~l~~~ 300 (533)
|.+.++|.++++.+..... -....+.|.++|+.|++...+.+. |+++|.++.+..+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 4578899999999988755 355678999999999999888886 5777777766543
No 156
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=87.43 E-value=0.17 Score=49.56 Aligned_cols=57 Identities=21% Similarity=0.454 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHhh----------hcCCCCCcEE-----EEEcCeecCCCCcccccCCC-------CCCEEEEEEecCCC
Q 009518 476 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLRGG 532 (533)
Q Consensus 476 ~~tV~~lK~~I~~----------~~gip~~~q~-----L~~~g~~L~d~~tL~~~~I~-------~~~~l~l~~~l~GG 532 (533)
+.+|.++|..++. .+++|.+..+ |.|+-+++.|++||+|..-. .+.++.+.+-..||
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGG 181 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGG 181 (309)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECC
Confidence 6899999999999 8999999999 99999999999999887654 47778887777777
No 157
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=87.42 E-value=3.4 Score=32.11 Aligned_cols=68 Identities=25% Similarity=0.321 Sum_probs=50.7
Q ss_pred EEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCC-CcEEEEE----cC--eecCCCCcccccCCC--CCCEEEEEEe
Q 009518 461 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF----AG--KQLEDGRTLADYNIQ--KESTLHLVLR 528 (533)
Q Consensus 461 v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~-~~q~L~~----~g--~~L~d~~tL~~~~I~--~~~~l~l~~~ 528 (533)
|..++|...+++++++.|+++|-..|++..|+.. +-+-|.+ +| .-|+.+++|.++... ...++++.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvk 77 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVK 77 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence 4567888999999999999999999999999864 3456777 22 246788899999887 4444544443
No 158
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=87.26 E-value=3.7 Score=30.69 Aligned_cols=59 Identities=15% Similarity=0.328 Sum_probs=42.2
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 466 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 466 g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
|+.+.+ + ..|+++|...+ ++++....+-.++..+.. ..-++.-+.+||.|.+.-...||
T Consensus 7 g~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 7 GETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEEeccCC
Confidence 444444 3 46899998775 666666667788888763 23455667789999999988887
No 159
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=85.69 E-value=2.1 Score=33.99 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=38.0
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccCCCC---CceeEEe
Q 009518 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF 349 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~---~~q~L~~ 349 (533)
+-.+++.|+++-+.+.|+..+.+|++.|..++|+.. ....|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 345788999999999999999999999999999987 4677877
No 160
>PRK06437 hypothetical protein; Provisional
Probab=84.92 E-value=7.2 Score=29.42 Aligned_cols=55 Identities=18% Similarity=0.309 Sum_probs=44.2
Q ss_pred CCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEEEE
Q 009518 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 313 ~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
.++.-.+++..+.|+.++=+. +|+++..-.+..+|..++ .++-++++|.+.+...
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~ 63 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEV 63 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEec
Confidence 566677888899999998654 478888777888899886 7778889999998754
No 161
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=84.80 E-value=4.4 Score=37.66 Aligned_cols=70 Identities=29% Similarity=0.354 Sum_probs=52.2
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCcee-EEec---c---EEcCCCCcccccccc-cCCeEEEE
Q 009518 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFA---G---KQLEDGRTLADYNIQ-KESTLHLV 374 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~-L~~~---g---~~L~~~~tl~~y~i~-~~~~l~l~ 374 (533)
+.+-|-.++|.+.++.+++++|++++...++++.|++..... |.+. + .+|+...++.+...+ ....++++
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 456678899999999999999999999999999999543222 4441 1 578888888877655 23455554
No 162
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=84.48 E-value=5.3 Score=31.15 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=44.8
Q ss_pred EEEEecCC-CcHHHHHHHHhhhcC-C-C-CCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 469 ITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 469 ~~~~v~~~-~tV~~lK~~I~~~~g-i-p-~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..++++.+ .||.+|+..+.+..+ + . .....+..+++...+ +.-+++|+.|.+.-+..||
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 46788876 899999999998864 1 1 123456778888775 4567779999999999998
No 163
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=84.48 E-value=3.1 Score=33.12 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=37.6
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCC---CcEEEEE
Q 009518 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF 501 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~---~~q~L~~ 501 (533)
..++...|+.+.+.+.++..+.+|+..|.++.|+.. ....|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 345688999999999999999999999999999987 4667766
No 164
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=84.18 E-value=7.9 Score=28.73 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=39.7
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.+++++..|+++|...+. ++ ....+..+|..+..+. -.+.-+++||.|.+.-...||
T Consensus 9 ~~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 9 TLSLPDGATVADALAAYG----AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred EEECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeeccCC
Confidence 466777889999988764 33 2356677888775321 223336779999999998888
No 165
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=84.18 E-value=7.6 Score=28.95 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=42.8
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.+++....||++|-.. .++++..--+..+|..+.-.. -.+.-+++|+.|.+.--.-||
T Consensus 9 ~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 9 PRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHALGGG 66 (66)
T ss_pred EEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEEecCC
Confidence 4566778899888765 588888888889997776322 233336779999998888777
No 166
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=84.01 E-value=4.9 Score=29.97 Aligned_cols=59 Identities=20% Similarity=0.368 Sum_probs=45.1
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 469 ~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..++++...||++|...+ ++++....+..+|+.+..+ .-.+.-+++||.|.+.-...||
T Consensus 7 ~~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 7 EPREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred eEEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 346667788999998876 4778888888999988654 1233447789999999998888
No 167
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=83.38 E-value=44 Score=32.14 Aligned_cols=216 Identities=13% Similarity=0.100 Sum_probs=115.2
Q ss_pred ccccCCCceEEEEEeecCCcee-EEEccCCceEEEE---ec-cCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcc
Q 009518 286 DYNIQKESTLHLVLRLRGGMQI-FVKTLTGKTITLE---VE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360 (533)
Q Consensus 286 ~~~i~~~~ti~l~~~~~~~~~i-~v~~~~g~~~~~~---v~-~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl 360 (533)
+|-+..||+|.+.....+.... +....+|...--. +. .+-|++++.+.|..++.-.
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~~------------------- 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSKG------------------- 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhhc-------------------
Confidence 4778899999887654443332 2334555433222 22 6889999999999754210
Q ss_pred cccccccCCeEEEEEEecCCeeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEe--ecCcc---------
Q 009518 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQ--------- 429 (533)
Q Consensus 361 ~~y~i~~~~~l~l~~~~~~~~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~--~~g~~--------- 429 (533)
.|- .+..+.+......+..|+|-..-.+.-.+.+....|+.++-...-..+.-......+. .+|+.
T Consensus 62 -~~~--~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~~AGG~~~~~~~~~~i~~~~~g~~~~~~idl~~ 138 (239)
T TIGR03028 62 -GFV--KQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLALAGGVTPDGADVITLVREREGKIFRKQIDFPA 138 (239)
T ss_pred -Ccc--cCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHHHcCCCCccCCCeEEEEEecCCeEEEEEEEHHH
Confidence 000 1122233333334456666544444456777888999887665432221111111111 12322
Q ss_pred -ccCCccccccccccCCeEEEEEEecCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCC-CcEEEEE---cCe
Q 009518 430 -LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF---AGK 504 (533)
Q Consensus 430 -l~d~~~L~~~~i~~~~~l~l~~~~~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~-~~q~L~~---~g~ 504 (533)
+.....-.++-+++|++|++-.. -.++|...-++.-.+.+.+++|+.++-.+..-...-.. ..-.++. +|+
T Consensus 139 l~~~g~~~~ni~L~~GD~I~V~~~----~~v~v~G~V~~pg~~~~~~~~tl~~al~~aGG~~~~a~~~~v~i~R~~~~g~ 214 (239)
T TIGR03028 139 LFNPGGDNENILVAGGDIIYVDRA----PVFYIYGEVQRPGAYRLERNMTVMQALAQGGGLTPRGTERGIRVMRRDDKGA 214 (239)
T ss_pred HHhcCCCcCCcEEcCCCEEEEcCC----ccEEEEeEccCCeEEEeCCCCCHHHHHHhcCCCCcccCcceEEEEEECCCCc
Confidence 22233334677888888887532 24566655556667788889999887766655543222 2223332 343
Q ss_pred ecCCCCcccccCCCCCCEEEEEEe
Q 009518 505 QLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 505 ~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
.-.-...+.+ .+++||.|++--+
T Consensus 215 ~~~~~~~~~~-~l~~gDii~V~~s 237 (239)
T TIGR03028 215 VEEVSGELGD-LVQPDDVIYVRES 237 (239)
T ss_pred EEEEecCCCc-ccCCCCEEEEeCc
Confidence 2111112222 3889999987543
No 168
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=83.29 E-value=9.2 Score=28.63 Aligned_cols=58 Identities=12% Similarity=0.206 Sum_probs=42.0
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.+++....|+++|...+ +.+.....+-.++..+..+ .-++.-+++||.|.+.-...||
T Consensus 9 ~~~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 9 PMQCAAGQTVHELLEQL----NQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEEEccCC
Confidence 45667788999998764 5555667778888887522 2344457789999999988887
No 169
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=82.95 E-value=4.8 Score=31.44 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=34.5
Q ss_pred eEEeeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCe
Q 009518 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 200 (533)
Q Consensus 164 ~~~i~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~ 200 (533)
++.+.|.++.+..+|+++|.++.++|++.-.|.|...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 8999999999999999999999999999999998743
No 170
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=82.87 E-value=5.2 Score=30.70 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=50.4
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCC--CCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 468 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~~gi--p~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
...+.+....||.+|...+.....- ......+..+|+.+.+ .-.+.-+++|+.|.+.-...||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5677888999999999999888531 2366788889999988 2445556779999999999888
No 171
>PRK07440 hypothetical protein; Provisional
Probab=82.62 E-value=9.5 Score=29.04 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=49.1
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.|+|.+.. + ..++....||++|-.. .++++...-+-.+|..+.-+ .-++.-+++||.|.+.--..||
T Consensus 4 ~m~i~vNG---~--~~~~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 4 PITLQVNG---E--TRTCSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred ceEEEECC---E--EEEcCCCCCHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 46666553 2 3667788899988764 47788888888999988632 2445557789999998888887
No 172
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=82.59 E-value=7 Score=29.03 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=43.9
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.++++...|+++|...+ +++++...+..+|+.+..+ .-.++-+++||.|.+.-...||
T Consensus 7 ~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 7 PVEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 45567788999998875 5777777888899888532 2344557889999999988887
No 173
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=82.50 E-value=5.5 Score=31.14 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=34.3
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCe
Q 009518 468 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 504 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~ 504 (533)
++.+.|++..+.++|..+|.++.++|++...|.|...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 7889999999999999999999999999999999644
No 174
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=82.41 E-value=4.4 Score=31.42 Aligned_cols=58 Identities=10% Similarity=0.176 Sum_probs=42.7
Q ss_pred eEEEEeecCccHHHHHHHhhhhcCC----CCCCeeEEecCccccCCccccccccCCCceEEEEEeec
Q 009518 240 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 302 (533)
Q Consensus 240 ~i~~~v~~~~tV~~lK~~I~~~~gi----p~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~ 302 (533)
...+++....||++|.+.+..+++- .........||+... .++-+++||.|.++...+
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~ 78 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVS 78 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCC
Confidence 4667777788999999999887642 233455666888776 456789999998875443
No 175
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=82.39 E-value=7 Score=29.22 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=42.8
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..++.+..|+.+|-.. .++++...-+..++..+..+. .+.+ +++||.|.+.-...||
T Consensus 9 ~~~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 9 QVEVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred EEEcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeeccCC
Confidence 3455677888887765 488999999999999776432 2234 7899999998888777
No 176
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=82.29 E-value=3.6 Score=31.56 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=38.1
Q ss_pred EEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEe
Q 009518 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 349 (533)
Q Consensus 308 ~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~ 349 (533)
.|-.++|+..++.+.|++|++|+=+.+|.+.++.|..+.|-.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrl 44 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRL 44 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEE
Confidence 567899999999999999999999999999999999877654
No 177
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=82.16 E-value=7.1 Score=31.16 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=43.9
Q ss_pred ceEEEEeccCccHHHHHHHhccccCCCCCceeEEec----c-EEc-CCCCcccccccccCCeEEEEEEec
Q 009518 315 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G-KQL-EDGRTLADYNIQKESTLHLVLRLR 378 (533)
Q Consensus 315 ~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~----g-~~L-~~~~tl~~y~i~~~~~l~l~~~~~ 378 (533)
..++-.++..|||+.|...+++.+.| +..-||--. + ..| +...|+.+-+|..|..|.+-.+..
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~ 82 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNE 82 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--T
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeecc
Confidence 45778899999999999999999999 666887541 2 234 356799999999999888876643
No 178
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=82.14 E-value=10 Score=30.10 Aligned_cols=61 Identities=11% Similarity=0.264 Sum_probs=45.2
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCC-----------CCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 468 TITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~~gi-----------p~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
...++++ ..||.+|.+.+.+.+.- .-....+..+|+...++.. .-+++|+.|.+.-+..||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 3566776 89999999999888631 0123566778888765432 457889999999999998
No 179
>smart00455 RBD Raf-like Ras-binding domain.
Probab=81.23 E-value=11 Score=28.75 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=41.5
Q ss_pred EEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcC--eecCC
Q 009518 461 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLED 508 (533)
Q Consensus 461 v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g--~~L~d 508 (533)
+-..+|+...+.+.|+.|+.|+-..+.++.|+.++.-.++..| ++|+-
T Consensus 4 v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl 53 (70)
T smart00455 4 VHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDL 53 (70)
T ss_pred EECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceec
Confidence 4467889999999999999999999999999999999998844 56653
No 180
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=80.91 E-value=9.3 Score=29.32 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=39.2
Q ss_pred EEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcC
Q 009518 460 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 503 (533)
Q Consensus 460 ~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g 503 (533)
.|-..+|+...+.|.|++|+.|+-.++.++-|++++.-.++..|
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 45567899999999999999999999999999999999887653
No 181
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=80.21 E-value=7.5 Score=30.81 Aligned_cols=67 Identities=12% Similarity=0.237 Sum_probs=48.9
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.|+|.|. |+ ..+++...||++|-.. .++++...-+-.+|..+.- ..-+..-+++||.|.+.--..||
T Consensus 18 ~m~I~VN---G~--~~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 18 LITISIN---DQ--SIQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred eEEEEEC---Ce--EEEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEEEecCC
Confidence 4555554 33 4566778899988776 4788877788899998853 34566668889999998888887
No 182
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=79.94 E-value=5.3 Score=30.54 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=35.9
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecc
Q 009518 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 351 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g 351 (533)
+.|--++|+...+.+.|+.|+.|.=++++++.|+.+....++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 345668899999999999999999999999999999977776543
No 183
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=78.66 E-value=9.1 Score=28.19 Aligned_cols=65 Identities=23% Similarity=0.470 Sum_probs=49.6
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhc---CCCCCcEEEEE-cCeecCCCCcccccCCCCCCEEEEEEec
Q 009518 465 TGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~lK~~I~~~~---gip~~~q~L~~-~g~~L~d~~tL~~~~I~~~~~l~l~~~l 529 (533)
+|+...++..++....-..++--+.. |-|+++-.|-- .|..|+-++..+|||+..|-++.|.++-
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLKA 72 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLKA 72 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEeec
Confidence 46677788888877666665554443 56887766653 6888998999999999999999998864
No 184
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=78.22 E-value=14 Score=29.55 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=42.9
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEE-EEc---Ce-ecCC-CCcccccCCCCCCEEEEEEecCCC
Q 009518 468 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFA---GK-QLED-GRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L-~~~---g~-~L~d-~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.++..++..+||..++..+.+.+.| ..+-|| .+. +- .|.+ +.|+.|.|+.+|-+|.+-.|--=|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred HhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 5677889999999999999999999 555665 332 22 4544 569999999999999888775433
No 185
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=76.86 E-value=2.8 Score=41.97 Aligned_cols=63 Identities=21% Similarity=0.312 Sum_probs=55.1
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCC--CcccccCCCCCCEEEEEE
Q 009518 465 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVL 527 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~--~tL~~~~I~~~~~l~l~~ 527 (533)
..+.+.+.|..+.....|+..+....|++.+..-++|++.++.++ .+|.+||+.+++++.+-.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ 75 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRC 75 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccC
Confidence 445678889999999999999999999999999999999999754 589999999999876644
No 186
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=76.75 E-value=9.8 Score=28.03 Aligned_cols=65 Identities=23% Similarity=0.489 Sum_probs=48.5
Q ss_pred CCCCeEEEEeecCccHHHHHHHhhhhc---CCCCCCeeEE-ecCccccCCccccccccCCCceEEEEEe
Q 009518 236 LTGKTITLEVESSDTIDNVKAKIQDKE---GIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 236 ~~g~~i~~~v~~~~tV~~lK~~I~~~~---gip~~~q~L~-~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
.+|+.+.++.+.+...--+.+.-.+.. |-|++.-.|. -+|..++-++...|||+.++-++++..+
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 367778888877776665555544443 3577766665 4788999999999999999999987765
No 187
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=76.63 E-value=29 Score=26.43 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=39.0
Q ss_pred EEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEE--cCeecCCCCcc
Q 009518 460 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTL 512 (533)
Q Consensus 460 ~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~d~~tL 512 (533)
.|--++|+...+.+.+..||.|.-..+.++.|+.++.-.++. ..++|+.+...
T Consensus 4 ~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d~ 58 (71)
T PF02196_consen 4 RVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQDS 58 (71)
T ss_dssp EEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSBG
T ss_pred EEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCce
Confidence 455678888999999999999999999999999999887764 34466644433
No 188
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=74.43 E-value=12 Score=29.03 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=37.0
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcC
Q 009518 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 503 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g 503 (533)
+.+.. .|..+.+.++++.|..+|+.+|..+.+++.....|.|..
T Consensus 4 vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 4 VKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred EEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 33444 567899999999999999999999999988888888854
No 189
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=74.15 E-value=22 Score=26.69 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=41.8
Q ss_pred EEecCC-CcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 471 LEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 471 ~~v~~~-~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.++... .||++|-.. .++++...-+-.+|..+.-+ .-++.-+++||.|.+.--..||
T Consensus 10 ~~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 10 IEVPESVKTVAELLTH----LELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred EEcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 455555 678887764 57788877888999988643 2445557889999998887777
No 190
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=73.70 E-value=6.5 Score=31.02 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=35.4
Q ss_pred ccCCceEEEEeccCccHHHHHHHhccccCCCC-CceeEEecc
Q 009518 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAG 351 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~-~~q~L~~~g 351 (533)
+++|.++.+.+.++.+..+|++.|.+++++.. ....|.|..
T Consensus 6 ~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~D 47 (82)
T cd06407 6 TYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLD 47 (82)
T ss_pred EeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEEC
Confidence 47889999999999999999999999999975 567787743
No 191
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=73.46 E-value=25 Score=32.53 Aligned_cols=75 Identities=27% Similarity=0.355 Sum_probs=53.4
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCc-EEEEE--c-C---eecCCCCcccccCCC-CCCEEEEE
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--A-G---KQLEDGRTLADYNIQ-KESTLHLV 526 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~-q~L~~--~-g---~~L~d~~tL~~~~I~-~~~~l~l~ 526 (533)
.++.+.|...+|....+.++++.|++++...++.+.|++... +-|.+ . + ..++...+|.+.... ....+++.
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr 81 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFR 81 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEE
Confidence 356677888999999999999999999999999999995422 23333 1 1 346667788887665 34455555
Q ss_pred Eec
Q 009518 527 LRL 529 (533)
Q Consensus 527 ~~l 529 (533)
.|.
T Consensus 82 ~r~ 84 (207)
T smart00295 82 VKF 84 (207)
T ss_pred EEE
Confidence 543
No 192
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=73.35 E-value=19 Score=26.24 Aligned_cols=48 Identities=17% Similarity=0.348 Sum_probs=35.8
Q ss_pred EEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEEEE
Q 009518 318 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 318 ~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
.+.+..+.|..++|+++.. +.-.++++|.... .++-++++|.|.+..+
T Consensus 9 ~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~-----~d~~L~e~D~v~~Ikk 56 (57)
T PF14453_consen 9 EIETEENTTLFELRKESKP------DADIVILNGFPTK-----EDIELKEGDEVFLIKK 56 (57)
T ss_pred EEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccC-----CccccCCCCEEEEEeC
Confidence 4667888999999999885 3336788888655 4566677889888754
No 193
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=73.35 E-value=11 Score=29.77 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=45.9
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHhhhcCCCC-CcEEEEEcCee-----cCCCCcccc----cCCCCCCEEEEEEe
Q 009518 464 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ-----LEDGRTLAD----YNIQKESTLHLVLR 528 (533)
Q Consensus 464 ~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~-~~q~L~~~g~~-----L~d~~tL~~----~~I~~~~~l~l~~~ 528 (533)
..|..+.+.++++.+..+|+..|.++.++.. ..+.|.|-.-. |..+.-|.+ |.....+++.|.++
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~v~ 81 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLLVH 81 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEEee
Confidence 4567899999999999999999999999976 67788773322 222223444 55555667766654
No 194
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=73.06 E-value=38 Score=25.64 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=45.9
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 469 ~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..++++...|+++|-+. .|++++.--...+|..+..+ --++.-+++|+.|.+.--..||
T Consensus 10 ~~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 10 KEVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred EEEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence 45677777999998876 57888888889999988743 2455567778999988877777
No 195
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=71.36 E-value=30 Score=26.22 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=39.7
Q ss_pred eEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEEEE
Q 009518 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 316 ~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
...+++.++.|+.++-+.+ ++++..-.+..+|..+. .++-++++|.+.+.+.
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPV 66 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEcc
Confidence 5667788889999998766 66776666677888774 4777889999988753
No 196
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=69.50 E-value=14 Score=28.21 Aligned_cols=62 Identities=13% Similarity=0.218 Sum_probs=47.4
Q ss_pred eEEEEeecCccHHHHHHHhhhhcCC--CCCCeeEEecCccccCCccccccccCCCceEEEEEeecC
Q 009518 240 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 303 (533)
Q Consensus 240 ~i~~~v~~~~tV~~lK~~I~~~~gi--p~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~ 303 (533)
.....+....||++|.+.+..+++- .........||+...+ .-.+..+++||+|.++...++
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsG 76 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSG 76 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTST
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCC
Confidence 5567788899999999999888641 2355777789998888 466778899999988765443
No 197
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=69.29 E-value=16 Score=38.75 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=52.5
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCC----CCCcEEEE---EcCeecCCCCcccccCCCCCCEEEEEEec
Q 009518 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gi----p~~~q~L~---~~g~~L~d~~tL~~~~I~~~~~l~l~~~l 529 (533)
+.|...+ +...+-++.+..|+||-..|-...+= +.....|. -+|.+|+.+.||++.||.||++++|.-+-
T Consensus 5 VtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 5 VTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 4455443 34667778899999999888887653 22234443 37999999999999999999999998653
No 198
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=68.84 E-value=2.7 Score=41.55 Aligned_cols=63 Identities=24% Similarity=0.402 Sum_probs=48.2
Q ss_pred CeEEEEEecCC--cEEEEEEcCCCcHHHHHHHHccccC-CC-CCCeEEEecCcccccCCcccccccc
Q 009518 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADYNIQ 138 (533)
Q Consensus 76 ~~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~g-ip-~~~q~L~~~G~~L~d~~~l~~y~i~ 138 (533)
+..++||..+. +..+|..+..-||++||..++...- -| +..|||+|.||.|.|...++|.-++
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrk 75 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRK 75 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHH
Confidence 45677777664 4567777778899999998876542 22 3569999999999999999988654
No 199
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=67.35 E-value=15 Score=39.56 Aligned_cols=66 Identities=33% Similarity=0.490 Sum_probs=43.3
Q ss_pred CCceEEEEeccCccHHHHHHHhccc--cCCCCC------ceeEEe----ccE-EcCCC-------------Ccccccccc
Q 009518 313 TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIF----AGK-QLEDG-------------RTLADYNIQ 366 (533)
Q Consensus 313 ~g~~~~~~v~~~~ti~~lK~~i~~~--~~ip~~------~q~L~~----~g~-~L~~~-------------~tl~~y~i~ 366 (533)
++..+.+.|-..|||.++|+||-+. -+.|.. ...|-+ .|+ .|.|. -||++|+|+
T Consensus 200 ~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~ 279 (539)
T PF08337_consen 200 GSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVP 279 (539)
T ss_dssp SSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--
T ss_pred CCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCC
Confidence 3456889999999999999999862 233333 333433 133 55553 478999999
Q ss_pred cCCeEEEEEEec
Q 009518 367 KESTLHLVLRLR 378 (533)
Q Consensus 367 ~~~~l~l~~~~~ 378 (533)
+|+++-|+++..
T Consensus 280 dga~vaLv~k~~ 291 (539)
T PF08337_consen 280 DGATVALVPKQH 291 (539)
T ss_dssp TTEEEEEEES--
T ss_pred CCceEEEeeccc
Confidence 999999998753
No 200
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=67.30 E-value=47 Score=25.52 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=39.5
Q ss_pred EeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcC--eecC
Q 009518 462 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE 507 (533)
Q Consensus 462 ~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g--~~L~ 507 (533)
--++|+...+.+.|.+||.|+-.++.++-|++++.--++.-| ++|.
T Consensus 5 ~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~ 52 (73)
T cd01817 5 ILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLV 52 (73)
T ss_pred ECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccc
Confidence 356788899999999999999999999999999998887655 4665
No 201
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.42 E-value=8.1 Score=38.20 Aligned_cols=56 Identities=13% Similarity=0.182 Sum_probs=41.1
Q ss_pred EEeccCccHHHHHHHhccccCCCCCceeEEe---ccEEc-----CCCCcccccccccCCeEEEE
Q 009518 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQL-----EDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 319 ~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~---~g~~L-----~~~~tl~~y~i~~~~~l~l~ 374 (533)
-.+.-.-||-|+|.++..+-|+.+..++|+| .|+.- ..+..|-.|+|++|+.+.+.
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 4456667999999999999999999999999 24321 22445566667777766554
No 202
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=66.15 E-value=16 Score=28.13 Aligned_cols=49 Identities=8% Similarity=0.152 Sum_probs=39.7
Q ss_pred EEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccC
Q 009518 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED 280 (533)
Q Consensus 232 ~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d 280 (533)
.|-.++|+..++.+++++|+.++=+..+.+.++.+....|..+-..++|
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~ 51 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMEN 51 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCC
Confidence 3556789999999999999999999999999998887766654433443
No 203
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=65.78 E-value=13 Score=28.89 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=35.0
Q ss_pred cCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecc
Q 009518 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 351 (533)
Q Consensus 312 ~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g 351 (533)
.+|.+..+.+.++.|-++++.+|+++++++.....|.|..
T Consensus 8 ~~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 8 YGGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred ECCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 3678899999999999999999999999987777888853
No 204
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=64.92 E-value=7.9 Score=38.91 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=58.3
Q ss_pred cCceEEeeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCCC--CCcccccCCCCCEEEEEEEecC
Q 009518 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLRG 227 (533)
Q Consensus 161 ~g~~~~i~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~--~tl~~y~I~~~s~i~l~~~~~~ 227 (533)
..+.+++.|...-....++...+...|++.+.--|+|+++.+.++ .++..||+..++++.+--+.+.
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d 79 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSD 79 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCC
Confidence 567788999999999999999999999999999999999999765 7899999999999987655443
No 205
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=64.86 E-value=30 Score=26.86 Aligned_cols=57 Identities=14% Similarity=0.233 Sum_probs=40.5
Q ss_pred eEEEEeecC-ccHHHHHHHhhhhcC-C-C-CCCeeEEecCccccCCccccccccCCCceEEEEEee
Q 009518 240 TITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 301 (533)
Q Consensus 240 ~i~~~v~~~-~tV~~lK~~I~~~~g-i-p-~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~ 301 (533)
...+++... .||++|.+.+.++++ + . ........|++...+ +.-+++||+|.+++.-
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~Ppv 77 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPV 77 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCC
Confidence 456777766 899999999999875 2 1 122455567777664 5678899999887543
No 206
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=64.79 E-value=13 Score=40.99 Aligned_cols=47 Identities=21% Similarity=0.424 Sum_probs=41.6
Q ss_pred EEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcC
Q 009518 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51 (533)
Q Consensus 5 ~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~ 51 (533)
|...++..+.+-+.++.|+..++++|.+..|+|...|.|+|.|....
T Consensus 319 Fs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 319 FSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSH 365 (732)
T ss_pred EeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccc
Confidence 34566789999999999999999999999999999999999877643
No 207
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=64.52 E-value=14 Score=28.24 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=37.8
Q ss_pred EccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccE
Q 009518 310 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 352 (533)
Q Consensus 310 ~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~ 352 (533)
--+||.+-.+.+.|+.||.|+=.+++++-|++++...++..|.
T Consensus 5 ~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 5 ILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred ECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 3578888899999999999999999999999999888877653
No 208
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=64.23 E-value=14 Score=37.58 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=53.5
Q ss_pred CCeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCC-CCCCeeEE--ecCccc-cCCccccccccCCCceE
Q 009518 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQL-EDGRTLADYNIQKESTL 295 (533)
Q Consensus 227 ~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gi-p~~~q~L~--~~g~~L-~d~~tl~~~~i~~~~ti 295 (533)
+...|.|+..+|.++...++-++||.+++..|...-+- +...+.|+ |=.+.| +|+.||++-|+.+...+
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvlv 376 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVLV 376 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhhh
Confidence 34568899999999999999999999999999987654 33345555 445555 77999999999875443
No 209
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=64.15 E-value=1.4e+02 Score=28.68 Aligned_cols=174 Identities=15% Similarity=0.187 Sum_probs=99.2
Q ss_pred cccCCCCCEEEEEEEecCCeeEEEEcCCCCeEEEE----ee-cCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccc
Q 009518 210 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLE----VE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284 (533)
Q Consensus 210 ~y~I~~~s~i~l~~~~~~~~~i~V~~~~g~~i~~~----v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl 284 (533)
+|-|.+|++|.+.+-........+......++.+. ++ ...|+.++.+.|..+..- +
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~----------~--------- 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSK----------G--------- 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhh----------c---------
Confidence 58899999999877554444333443333344433 33 566999999999876421 0
Q ss_pred cccccCCCceEEEEEeecCCceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCC--ceeEEe---ccEE------
Q 009518 285 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIF---AGKQ------ 353 (533)
Q Consensus 285 ~~~~i~~~~ti~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~--~q~L~~---~g~~------ 353 (533)
+.-....+.+......+..++|.-.=++.-.+.+.+..|+.++-++.- |+.+. ....+. .|+.
T Consensus 62 ---~~~~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~~AG---G~~~~~~~~~~i~~~~~g~~~~~~id 135 (239)
T TIGR03028 62 ---GFVKQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLALAG---GVTPDGADVITLVREREGKIFRKQID 135 (239)
T ss_pred ---CcccCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHHHcC---CCCccCCCeEEEEEecCCeEEEEEEE
Confidence 000112222322223345676755445555567777788888766543 33222 111111 2332
Q ss_pred ----cCCCCcccccccccCCeEEEEEEecCCeeEEEEecCCcEEEEEecCCCcHHHHHHHhhc
Q 009518 354 ----LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD 412 (533)
Q Consensus 354 ----L~~~~tl~~y~i~~~~~l~l~~~~~~~~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~ 412 (533)
+.++..-.++-++++|+|++-.. -.++|--.-++.-.+++.++.|+.+.-.+.--
T Consensus 136 l~~l~~~g~~~~ni~L~~GD~I~V~~~----~~v~v~G~V~~pg~~~~~~~~tl~~al~~aGG 194 (239)
T TIGR03028 136 FPALFNPGGDNENILVAGGDIIYVDRA----PVFYIYGEVQRPGAYRLERNMTVMQALAQGGG 194 (239)
T ss_pred HHHHHhcCCCcCCcEEcCCCEEEEcCC----ccEEEEeEccCCeEEEeCCCCCHHHHHHhcCC
Confidence 22344556888999999998632 13555433345556788899999887666433
No 210
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=63.22 E-value=41 Score=26.23 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=38.0
Q ss_pred EEEecC-CCcHHHHHHHHhhhcC-----CCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 470 TLEVES-SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~-~~tV~~lK~~I~~~~g-----ip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.+++.+ ..||.+|+..+.++.. ......+..-++....+ +.-+.+||.|-+.-+..||
T Consensus 18 ~~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 18 ALELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred eEEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 345543 4799999999988862 11222344445544333 3347789999999999988
No 211
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=63.20 E-value=37 Score=26.76 Aligned_cols=61 Identities=11% Similarity=0.255 Sum_probs=40.9
Q ss_pred CeEEEEeecCccHHHHHHHhhhhcCC------C-----CCCeeEEecCccccCCccccccccCCCceEEEEEeecC
Q 009518 239 KTITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 303 (533)
Q Consensus 239 ~~i~~~v~~~~tV~~lK~~I~~~~gi------p-----~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~ 303 (533)
....+++. ..||++|.+.+.++++- . ........||+..+.+.. ..+++||+|.+++..++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsG 87 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSG 87 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcC
Confidence 35667775 78999999999988641 1 112445567776654422 67899999988765433
No 212
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=63.04 E-value=22 Score=27.77 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=38.8
Q ss_pred CeEEEEeecCccHHHHHHHhhhhcC-CCC--CCeeEEecCccccCCccccccccCCCceEEEEEe
Q 009518 239 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 239 ~~i~~~v~~~~tV~~lK~~I~~~~g-ip~--~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
....+++....||++|.+.+..+++ +.. ..-.+..||+... .++-+++||+|.+++.
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPP 78 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCC
Confidence 4566778788899999999987762 211 1123456777653 4557888999987753
No 213
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=62.38 E-value=28 Score=27.01 Aligned_cols=37 Identities=22% Similarity=0.444 Sum_probs=32.0
Q ss_pred CCEEE-EEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc
Q 009518 466 GKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 502 (533)
Q Consensus 466 g~~~~-~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 502 (533)
|..+. +.+..+.+..+|+.+|+...+.+.....+.|.
T Consensus 10 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 10 GDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp TEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 34455 89999999999999999999999888898884
No 214
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=62.23 E-value=27 Score=27.61 Aligned_cols=45 Identities=27% Similarity=0.328 Sum_probs=35.3
Q ss_pred eEEEEeccCccHHHHHHHhccccCC--CCCceeEE-e-----ccEEcCCCCcc
Q 009518 316 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI-F-----AGKQLEDGRTL 360 (533)
Q Consensus 316 ~~~~~v~~~~ti~~lK~~i~~~~~i--p~~~q~L~-~-----~g~~L~~~~tl 360 (533)
..++.+.+++|+.+|-+++.+++++ .|..+.|+ + ..+.|+++..+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~~~~~~er~L~~~E~p 70 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVEESGGEERPLDDDECP 70 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEECTTTEEEEETTTSBH
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEEcCCCEEEEcCCCCch
Confidence 8899999999999999999999999 66667785 3 24666554433
No 215
>KOG4261 consensus Talin [Cytoskeleton]
Probab=61.98 E-value=12 Score=41.23 Aligned_cols=106 Identities=25% Similarity=0.339 Sum_probs=79.1
Q ss_pred eEEEEeecCccHHHHHHHhhhhcCCC---CCCeeEEe------cCccccCCccccccccCCCceEEEEEeecCCceeEEE
Q 009518 240 TITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 310 (533)
Q Consensus 240 ~i~~~v~~~~tV~~lK~~I~~~~gip---~~~q~L~~------~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~~i~v~ 310 (533)
.-++..+|+..|-+--+.|.+++.-. +.++-|.. +|--|+.++||.+|...+++++-.--+ +-..-|.
T Consensus 14 ~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k---~r~lkvr 90 (1003)
T KOG4261|consen 14 VKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRK---QRPLKVR 90 (1003)
T ss_pred eeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhh---cccceee
Confidence 33466779999988888888876421 33333322 455689999999999999999855332 2346788
Q ss_pred ccCCceEEEEeccCccHHHHHHHhccccCC-CCCceeEE
Q 009518 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI 348 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~i~~~~~i-p~~~q~L~ 348 (533)
+++|..-++.|..+.+|.++.--||.+.|| .-+.+.|.
T Consensus 91 mldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslv 129 (1003)
T KOG4261|consen 91 MLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLV 129 (1003)
T ss_pred ecccccceeeecccccHHHHHHHHHhccCccchhhhhhh
Confidence 999999999999999999999999999987 44444443
No 216
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=61.66 E-value=18 Score=36.92 Aligned_cols=68 Identities=21% Similarity=0.333 Sum_probs=54.9
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhc-CCCCCcEEEE--EcCeecCC-CCcccccCCCCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKES 521 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~-gip~~~q~L~--~~g~~L~d-~~tL~~~~I~~~~ 521 (533)
.++..|-|+..+|+.....+..+.||.|++..|...- +-+...|.|. |-.++|.| +.||++.|+.+-.
T Consensus 303 ~PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsv 374 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSV 374 (380)
T ss_pred CCcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhh
Confidence 3667899999999999999999999999999998764 3444467775 56889975 5699999987653
No 217
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=61.16 E-value=9 Score=29.90 Aligned_cols=33 Identities=24% Similarity=0.252 Sum_probs=29.9
Q ss_pred EEEEeccCccHHHHHHHhccccCC-CCCceeEEe
Q 009518 317 ITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF 349 (533)
Q Consensus 317 ~~~~v~~~~ti~~lK~~i~~~~~i-p~~~q~L~~ 349 (533)
-|+-|.|..|++++..++.+|+.+ .|+.+.|+.
T Consensus 16 KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl 49 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFL 49 (87)
T ss_pred eeeecCCCCcHHHHHHHHHHHhccCChhheeEEE
Confidence 478999999999999999999998 788888876
No 218
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.05 E-value=12 Score=37.14 Aligned_cols=56 Identities=13% Similarity=0.194 Sum_probs=46.2
Q ss_pred EEecCCCcHHHHHHHHhhhcCCCCCcEEEEE---cCee-----cCCCCcccccCCCCCCEEEEE
Q 009518 471 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQ-----LEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 471 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~---~g~~-----L~d~~tL~~~~I~~~~~l~l~ 526 (533)
.-+.-.-||.|+|..+..+.|+.+...+|++ +|+. .+.+..|-.|+|++|+.+-+.
T Consensus 352 ~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 352 GLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred eEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 3456678999999999999999999999987 4553 334678999999999988654
No 219
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=60.62 E-value=26 Score=27.87 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=37.5
Q ss_pred EEc-cCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCccc
Q 009518 309 VKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361 (533)
Q Consensus 309 v~~-~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~ 361 (533)
||. ++|.++.+.+.++-+-+++.++|++++++. +.-.+.|... .|..|+.
T Consensus 5 VKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~ 55 (86)
T cd06408 5 VKVHAQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMG 55 (86)
T ss_pred EEEEecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCcccc
Confidence 444 578999999999999999999999999995 3445555443 4444443
No 220
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=60.36 E-value=32 Score=37.16 Aligned_cols=64 Identities=36% Similarity=0.495 Sum_probs=42.2
Q ss_pred CcEEEEEecCCCcHHHHHHHhhccc--CCCCcc------eeEeec-C---c-cccCC-------------cccccccccc
Q 009518 390 GKTITLEVESSDTIDNVKAKIQDKE--GIPPDQ------QRLIFA-G---K-QLEDG-------------RTLADYNIQK 443 (533)
Q Consensus 390 g~~~~~~v~~~~Tv~~lK~~I~~~~--~vp~~~------q~l~~~-g---~-~l~d~-------------~~L~~~~i~~ 443 (533)
+..+.++|-.+|||.++|++|-+-. +.|..+ --|-|. | . .|+|. .||++|+++.
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 3557889999999999999988742 333332 224452 1 2 35443 4899999999
Q ss_pred CCeEEEEEEe
Q 009518 444 ESTLHLVLRL 453 (533)
Q Consensus 444 ~~~l~l~~~~ 453 (533)
|+++.|+++.
T Consensus 281 ga~vaLv~k~ 290 (539)
T PF08337_consen 281 GATVALVPKQ 290 (539)
T ss_dssp TEEEEEEES-
T ss_pred CceEEEeecc
Confidence 9999999865
No 221
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=59.70 E-value=4.3 Score=40.21 Aligned_cols=60 Identities=23% Similarity=0.416 Sum_probs=44.1
Q ss_pred CeeeEEEeCCCCE--EEEEecCCCcHHHHHHHHhhhcC-CC-CCcEEEEEcCeecCCCCccccc
Q 009518 456 GMQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADY 515 (533)
Q Consensus 456 ~m~i~v~~~~g~~--~~~~v~~~~tV~~lK~~I~~~~g-ip-~~~q~L~~~g~~L~d~~tL~~~ 515 (533)
+..++|+..+.+. ..+..+...||.+||..++..+- -| +.+|||+|.|+.|.|...|.|.
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~ 72 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDW 72 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHH
Confidence 3456666655444 44555678899999999998763 22 3579999999999998888775
No 222
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=58.02 E-value=14 Score=28.69 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=32.3
Q ss_pred eEEEEeccCccHHHHHHHhccccCCCCCceeEEec
Q 009518 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350 (533)
Q Consensus 316 ~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~ 350 (533)
|+.+.+.++.+..++..+|.++++.|++.-.|.|+
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 46688899999999999999999999999999995
No 223
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=57.39 E-value=19 Score=30.64 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=37.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccc
Q 009518 467 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 514 (533)
Q Consensus 467 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~ 514 (533)
+..-+-|+.+.||+++...|..+.++++++.-|+.++..+..+.++++
T Consensus 41 K~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 444446999999999999999999999999555557765566666554
No 224
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=57.23 E-value=51 Score=26.23 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=36.0
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCccc
Q 009518 464 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 513 (533)
Q Consensus 464 ~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~ 513 (533)
..|....+.|+++.+..+|..+|.++.++. ....+.|... .|..|+.
T Consensus 9 ~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE--GD~iti~ 55 (86)
T cd06408 9 AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD--GDMITMG 55 (86)
T ss_pred ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC--CCCcccc
Confidence 356789999999999999999999999995 5566666443 3444443
No 225
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=56.86 E-value=57 Score=27.12 Aligned_cols=63 Identities=29% Similarity=0.333 Sum_probs=45.0
Q ss_pred cEEEEEecCcccHHHHHHHHHhh----hC--CCCc-cceEEEccEE--cCCCCCcccccc-----ccccccceEEEe
Q 009518 11 KTITLEVESSDTIDNVKAKIQDK----EG--IPPD-QQRLIFAGKQ--LEDGRTLADYNI-----QKESTLHLVLRL 73 (533)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~----~~--i~~~-~q~l~~~g~~--L~~~~tl~~y~i-----~~~sti~l~~~~ 73 (533)
.++++.+.+++|++++.+.+-.+ .+ -+++ .-.|...|+. |..+..|.+|.. ..+..+||++..
T Consensus 29 ~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~ 105 (108)
T smart00144 29 QTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMT 105 (108)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEe
Confidence 67999999999999998877655 22 2233 4567778876 777778887763 456677877643
No 226
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=56.82 E-value=38 Score=26.62 Aligned_cols=37 Identities=27% Similarity=0.379 Sum_probs=31.7
Q ss_pred CCceEEEEeccCccHHHHHHHhccccCCC--CCceeEEe
Q 009518 313 TGKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIF 349 (533)
Q Consensus 313 ~g~~~~~~v~~~~ti~~lK~~i~~~~~ip--~~~q~L~~ 349 (533)
.+...++.|.+.+|..+|-+.+.+|+++. ++.+.|+-
T Consensus 11 ~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~e 49 (87)
T cd01768 11 GGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVE 49 (87)
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEE
Confidence 46778999999999999999999999997 66666664
No 227
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=56.03 E-value=18 Score=28.76 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=35.9
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCcee
Q 009518 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 346 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~ 346 (533)
+=|--++|.++++.+..+++.+++=+..+.+.|+|.+..+
T Consensus 4 L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~ 43 (87)
T cd01777 4 LRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQN 43 (87)
T ss_pred EEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHh
Confidence 4456688999999999999999999999999999998665
No 228
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=56.00 E-value=34 Score=27.30 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=28.9
Q ss_pred EEec-CCCcHHHHHHHHhh-hcCCCCCcEEEEEcCeec----------CCCCcccccCCCCCCEEEEE
Q 009518 471 LEVE-SSDTIDNVKAKIQD-KEGIPPDQQRLIFAGKQL----------EDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 471 ~~v~-~~~tV~~lK~~I~~-~~gip~~~q~L~~~g~~L----------~d~~tL~~~~I~~~~~l~l~ 526 (533)
+.++ ..+|+.+|-.+|-. ..|...-...+ +|..| ..+++|+++||.+|+.|.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~--~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSV--GGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEE--S-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEe--CCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 3444 36799999998644 56655422222 33333 13478999999999988753
No 229
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=55.85 E-value=52 Score=24.35 Aligned_cols=58 Identities=12% Similarity=0.225 Sum_probs=40.0
Q ss_pred ccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEEEE
Q 009518 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
..||+.+.+ + ..|+.++.+.+ ++++..-....++..++ .....+..++++|.+.+.+.
T Consensus 4 ~~Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 4 FVNGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred EECCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEe
Confidence 457777776 3 46899988765 56664445666777665 34445777999999998854
No 230
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=55.84 E-value=23 Score=39.11 Aligned_cols=43 Identities=23% Similarity=0.463 Sum_probs=38.4
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCccc
Q 009518 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 126 (533)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L 126 (533)
.++..+.+-++++.|...++++|..-.|+|...|.|+|.|...
T Consensus 322 ~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 322 VQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred ccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 4566788889999999999999999999999999999997554
No 231
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=55.48 E-value=3.9 Score=40.36 Aligned_cols=63 Identities=19% Similarity=0.462 Sum_probs=0.0
Q ss_pred CCeEEEEEecCCcEEEEEEc---C--CCcHHHHHHHHcc----------ccCCCCCCeE-----EEecCcccccCCcccc
Q 009518 75 GGMQIFVKTLTGKTITLEVE---S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLAD 134 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~---~--~~tV~~lK~~i~~----------~~gip~~~q~-----L~~~G~~L~d~~~l~~ 134 (533)
..+.|.+|.+....+.+.+. + +.+|.++|+.+++ ..++|.+..+ |+|+-+.+.|.++|.+
T Consensus 77 ~sItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e 156 (309)
T PF12754_consen 77 KSITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAE 156 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHH
Confidence 35667777665555444432 2 5899999999999 8899998888 9999999999999998
Q ss_pred ccc
Q 009518 135 YNI 137 (533)
Q Consensus 135 y~i 137 (533)
..-
T Consensus 157 ~l~ 159 (309)
T PF12754_consen 157 VLA 159 (309)
T ss_dssp ---
T ss_pred HHh
Confidence 753
No 232
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=53.45 E-value=53 Score=33.06 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=45.9
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.+++..+.||.+|-.. .+++++..-+..||+.+.-+ .-.++-+++||.|.+.--..||
T Consensus 9 ~~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~-~w~~t~LkeGD~IEII~~VgGG 66 (326)
T PRK11840 9 PRQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPRS-EYGQVALEEGDELEIVHFVGGG 66 (326)
T ss_pred EEecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCHH-HcCccccCCCCEEEEEEEecCC
Confidence 4666778899888765 48899888899999998633 3455668889999999988888
No 233
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=53.39 E-value=42 Score=26.40 Aligned_cols=40 Identities=20% Similarity=0.315 Sum_probs=31.7
Q ss_pred EEE-eCCCCEEEEEecC--CCcHHHHHHHHhhhcCCCCCcEEEEE
Q 009518 460 FVK-TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 501 (533)
Q Consensus 460 ~v~-~~~g~~~~~~v~~--~~tV~~lK~~I~~~~gip~~~q~L~~ 501 (533)
.|+ +..|.+..+.+++ +.+.++|++.|..+.+++ .+.|.|
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 344 4567788899998 669999999999999999 454444
No 234
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=53.36 E-value=34 Score=26.87 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=32.1
Q ss_pred ccCCceEEEEecc--CccHHHHHHHhccccCCCCCceeEEe
Q 009518 311 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 349 (533)
Q Consensus 311 ~~~g~~~~~~v~~--~~ti~~lK~~i~~~~~ip~~~q~L~~ 349 (533)
+++|.++.+.+++ +.|-+++++.+...++++ ...|.|
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 5889999999999 669999999999999999 455555
No 235
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=53.24 E-value=39 Score=25.98 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=31.8
Q ss_pred CCEEEEEec-CCCcHHHHHHHHhhhcCCCCCcEEEEEc
Q 009518 466 GKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA 502 (533)
Q Consensus 466 g~~~~~~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~ 502 (533)
|..+.+.+. .+.+.++|+.+|.++.+.+.....+.|.
T Consensus 9 ~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 9 GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 567888888 8999999999999999998767777774
No 236
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=53.02 E-value=28 Score=27.57 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=31.8
Q ss_pred cCCceEEEEeccCccHHHHHHHhccccCCCC--CceeEEe
Q 009518 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIF 349 (533)
Q Consensus 312 ~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~--~~q~L~~ 349 (533)
.++...++.+.+++|+.++-..+.++++++. +.+.|+-
T Consensus 13 ~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e 52 (90)
T smart00314 13 PGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVE 52 (90)
T ss_pred CCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEE
Confidence 4577889999999999999999999999964 4566653
No 237
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=52.55 E-value=44 Score=26.89 Aligned_cols=66 Identities=17% Similarity=0.323 Sum_probs=44.3
Q ss_pred CCCCEEEEEecC-----CCcHHHHHHHHhhhcCCCC-CcEEEEEc---Ce--ecCCCCcccc-----cCCCCCCEEEEEE
Q 009518 464 LTGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFA---GK--QLEDGRTLAD-----YNIQKESTLHLVL 527 (533)
Q Consensus 464 ~~g~~~~~~v~~-----~~tV~~lK~~I~~~~gip~-~~q~L~~~---g~--~L~d~~tL~~-----~~I~~~~~l~l~~ 527 (533)
..|..+.+.++. +.+..+|+.+|.+..++++ ....|.|. |. .|.++.-|.+ +.-....++.+.+
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v 86 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNPLRIDV 86 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCceEEEEE
Confidence 355567777774 7899999999999999998 66677773 33 3344333333 2333577888777
Q ss_pred ec
Q 009518 528 RL 529 (533)
Q Consensus 528 ~l 529 (533)
.+
T Consensus 87 ~~ 88 (91)
T cd06398 87 TV 88 (91)
T ss_pred EE
Confidence 54
No 238
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=52.55 E-value=30 Score=27.49 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=34.5
Q ss_pred eEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCcc
Q 009518 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (533)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~ 40 (533)
++=|--++|.++++++..+|+.+.+=+.+.++.|+|.+-
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 344556889999999999999999999999999999875
No 239
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=50.93 E-value=45 Score=27.66 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=29.3
Q ss_pred EEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCC
Q 009518 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (533)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~ 38 (533)
|+|-..+|++-++.|.-.-+..+||+|+-+|.|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 678889999999999999999999999999999987
No 240
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=50.53 E-value=32 Score=26.45 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=31.8
Q ss_pred cCCceEEEEec-cCccHHHHHHHhccccCCCCCceeEEec
Q 009518 312 LTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFA 350 (533)
Q Consensus 312 ~~g~~~~~~v~-~~~ti~~lK~~i~~~~~ip~~~q~L~~~ 350 (533)
.+|....+.+. ++.|.++++++|+++++.+.....+.|.
T Consensus 7 ~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~ 46 (81)
T cd05992 7 YGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYP 46 (81)
T ss_pred ecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEee
Confidence 44677888888 9999999999999999998655566664
No 241
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=50.17 E-value=53 Score=26.79 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=34.3
Q ss_pred EEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEE
Q 009518 461 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 501 (533)
Q Consensus 461 v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~ 501 (533)
++..-|.+..+.|+.+.+..+|+.++.+..+++.. ..+.|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 45667889999999999999999999999999886 55554
No 242
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=49.80 E-value=46 Score=27.59 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=38.4
Q ss_pred EEEEEeecCCceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEec
Q 009518 295 LHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 350 (533)
Q Consensus 295 i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~ 350 (533)
+.+..+.-++.+| =+.-.+.+++++|++-+-..|...+++++..|..+|-
T Consensus 31 V~i~l~aiG~~Pi------lK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYV 80 (116)
T KOG3439|consen 31 VQIRLRAIGDAPI------LKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYV 80 (116)
T ss_pred EEEEEeccCCCcc------eecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEE
Confidence 4444444444444 2345688999999999999999999999999998883
No 243
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=49.19 E-value=1.3e+02 Score=23.54 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=30.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhcCCC--CCcEEEE
Q 009518 466 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLI 500 (533)
Q Consensus 466 g~~~~~~v~~~~tV~~lK~~I~~~~gip--~~~q~L~ 500 (533)
+...++.|+.++|..++-..+..+.+++ +.+..|+
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 6678999999999999999999999997 5666665
No 244
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=49.00 E-value=20 Score=29.04 Aligned_cols=55 Identities=15% Similarity=0.242 Sum_probs=34.0
Q ss_pred EEeecCccHHHHHHHhhhhcCCCCCCe------------eEE-ecCccccCCccc--cccccCCCceEEEEEeec
Q 009518 243 LEVESSDTIDNVKAKIQDKEGIPPDQQ------------RLI-FAGKQLEDGRTL--ADYNIQKESTLHLVLRLR 302 (533)
Q Consensus 243 ~~v~~~~tV~~lK~~I~~~~gip~~~q------------~L~-~~g~~L~d~~tl--~~~~i~~~~ti~l~~~~~ 302 (533)
++++...||++|-+.+.+++. .... .++ .|| .|.+.+ .++.+++||+|.+++..+
T Consensus 23 ~~~~~~~tV~dll~~L~~~~~--~~~~~lf~~~g~lr~~i~VlvN~---~di~~l~g~~t~L~dgD~v~i~P~v~ 92 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNLL--EERPDLFIEGGSVRPGIIVLIND---TDWELLGEEDYILEDGDHVVFISTLH 92 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhCc--hhhhhhEecCCcccCCEEEEECC---ccccccCCcccCCCCcCEEEEECCCC
Confidence 444456799999999988763 1111 111 233 234445 467899999998876443
No 245
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=47.39 E-value=42 Score=36.87 Aligned_cols=182 Identities=19% Similarity=0.267 Sum_probs=95.7
Q ss_pred eEEEEeccCccHHHHHHHhccccCCCCCceeEEe----ccEEcC--CCCcccccccccCCeEEEEE--EecC-C--eeEE
Q 009518 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQLE--DGRTLADYNIQKESTLHLVL--RLRG-G--MQIF 384 (533)
Q Consensus 316 ~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~----~g~~L~--~~~tl~~y~i~~~~~l~l~~--~~~~-~--~~i~ 384 (533)
++.+.|....++.-.|+-|++..++|.+..++.- +|..++ ++.||... -++.+|.+.. .+.. . |.|+
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEEE
Confidence 6788999999999999999999999999988875 233332 34555443 2444444442 2221 1 2332
Q ss_pred E-EecCCc------EEEEEecCCCcHHHHHHHhhcccC------CCCcceeEe-------ecCcc-ccCCccccccc--c
Q 009518 385 V-KTLTGK------TITLEVESSDTIDNVKAKIQDKEG------IPPDQQRLI-------FAGKQ-LEDGRTLADYN--I 441 (533)
Q Consensus 385 v-k~~~g~------~~~~~v~~~~Tv~~lK~~I~~~~~------vp~~~q~l~-------~~g~~-l~d~~~L~~~~--i 441 (533)
. ..+..+ .+..-++.++|+++.|..+-.++. ..-.-|++. -+|.. ++++.++.+-. +
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~~ 1035 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYNW 1035 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhhh
Confidence 2 112111 234567899999988876544322 222222222 12333 34444333322 1
Q ss_pred ccC-------CeEEEEEEecCCeeeEEEe--CCC---CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE
Q 009518 442 QKE-------STLHLVLRLRGGMQIFVKT--LTG---KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 500 (533)
Q Consensus 442 ~~~-------~~l~l~~~~~~~m~i~v~~--~~g---~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~ 500 (533)
... ..++.. +......|+++. ... ..+.--+-....+.+++..+.+.-|||.+...+.
T Consensus 1036 ~~~~~~qE~~deV~~~-k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1036 CSHLYLQEITDEVMIG-KPGESLPIMVRRWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAIT 1105 (1203)
T ss_pred HHHHHHHHHHhhcccC-CCCccchhhheeccccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhhh
Confidence 100 000000 001122333332 110 0111112245678999999999999999877543
No 246
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=47.21 E-value=38 Score=26.39 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=32.0
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc
Q 009518 468 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 502 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 502 (533)
++.+.+++..+..+|..+|.++...+++.-.|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 46678899999999999999999999999999985
No 247
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=46.96 E-value=81 Score=25.63 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=33.9
Q ss_pred eeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCC-CcEEE
Q 009518 458 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRL 499 (533)
Q Consensus 458 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~-~~q~L 499 (533)
-|.|-..++...++.++.+.||+|+-..++.+..++. .+.+|
T Consensus 4 ~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l 46 (97)
T cd01775 4 CIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQL 46 (97)
T ss_pred EEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEE
Confidence 3555566777789999999999999999999998887 44444
No 248
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=46.78 E-value=28 Score=29.57 Aligned_cols=59 Identities=20% Similarity=0.491 Sum_probs=40.6
Q ss_pred EEEE-EcC-CCcHHHHHHHHcc----ccCCCCCC------eEEEec-----------------Cccc---ccCCcccccc
Q 009518 89 ITLE-VES-SDTIDNVKAKIQD----KEGIPPDQ------QRLIFA-----------------GKQL---EDGRTLADYN 136 (533)
Q Consensus 89 ~~l~-v~~-~~tV~~lK~~i~~----~~gip~~~------q~L~~~-----------------G~~L---~d~~~l~~y~ 136 (533)
+.+. |+. +.||.+|++.+.+ ..|+||-+ .++++. ...| +++.+|.++|
T Consensus 17 ~Vl~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~g 96 (122)
T PF10209_consen 17 LVLHNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELG 96 (122)
T ss_pred eeeecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcC
Confidence 3344 776 8899998887764 45676633 334322 1567 7789999999
Q ss_pred ccccccceeee
Q 009518 137 IQKESTLHLVL 147 (533)
Q Consensus 137 i~~~s~i~l~~ 147 (533)
|.++..|.+.-
T Consensus 97 v~nETEiSfF~ 107 (122)
T PF10209_consen 97 VENETEISFFN 107 (122)
T ss_pred CCccceeeeeC
Confidence 99998887754
No 249
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=46.66 E-value=51 Score=26.08 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=31.4
Q ss_pred eEEEEc-CCCcEEEEEecCcccHHHHHHHHHhhhCCCCc
Q 009518 2 QIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (533)
Q Consensus 2 ~i~~~~-~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~ 39 (533)
.||..+ .++..-++.|.+++|+.+|-..+.++.++..+
T Consensus 6 rV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 6 RVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred EEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 455554 45678889999999999999999999998763
No 250
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=46.22 E-value=44 Score=26.52 Aligned_cols=38 Identities=26% Similarity=0.274 Sum_probs=32.9
Q ss_pred EEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcc
Q 009518 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420 (533)
Q Consensus 383 i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~ 420 (533)
|.|.+.+|...++.|.+.+|+.++-+.+.++.++....
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~ 42 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDS 42 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCC
Confidence 45667899999999999999999999999998876654
No 251
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=45.73 E-value=45 Score=26.99 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=38.7
Q ss_pred EecCCCcHHHHHHHHhhhcCCCCCcEEEEEc-Ce------ecCCCC---cc--cccCCCCCCEEEEEEecCCC
Q 009518 472 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GK------QLEDGR---TL--ADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 472 ~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~-g~------~L~d~~---tL--~~~~I~~~~~l~l~~~l~GG 532 (533)
++....||.+|-..+.+.. |...-+++.. |+ .|-|+. .| .++-+++|+.|.+.-.+.||
T Consensus 24 ~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 24 DGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred cCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 3335679999999999876 3333344432 21 222222 23 46778999999999988887
No 252
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=44.69 E-value=27 Score=28.98 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=29.5
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccCCCC
Q 009518 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 342 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~ 342 (533)
++|...+|.+.+++|..-.+-.+||+++-.|+|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 678889999999999999999999999999999987
No 253
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=44.09 E-value=1e+02 Score=22.78 Aligned_cols=57 Identities=16% Similarity=0.293 Sum_probs=39.5
Q ss_pred CCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEEEE
Q 009518 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 313 ~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
||+.+. +..+.|+.++.+.+. ++++.-....+|+.++. ..-.++.++++|.+.+.+.
T Consensus 5 Ng~~~~--~~~~~tv~~ll~~l~----~~~~~i~V~vNg~~v~~-~~~~~~~L~~gD~V~ii~~ 61 (65)
T cd00565 5 NGEPRE--VEEGATLAELLEELG----LDPRGVAVALNGEIVPR-SEWASTPLQDGDRIEIVTA 61 (65)
T ss_pred CCeEEE--cCCCCCHHHHHHHcC----CCCCcEEEEECCEEcCH-HHcCceecCCCCEEEEEEe
Confidence 455544 456789999987764 66766677778886543 3334466899999998864
No 254
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=44.03 E-value=77 Score=24.91 Aligned_cols=57 Identities=19% Similarity=0.383 Sum_probs=44.1
Q ss_pred cCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEe-ccEEcCCCCcccccccccCCeEEEEEEe
Q 009518 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 377 (533)
Q Consensus 312 ~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~-~g~~L~~~~tl~~y~i~~~~~l~l~~~~ 377 (533)
..+..+++...+..||+++-+ .+|+|..+=.++. +|+..+- +|-+++|+.+.+.+..
T Consensus 20 ~r~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P~~ 77 (81)
T PF14451_consen 20 RRGGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYPVF 77 (81)
T ss_pred hcCCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEecc
Confidence 346778899999999988754 6899998888776 6776543 4888899999988653
No 255
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=43.46 E-value=1.4e+02 Score=24.72 Aligned_cols=73 Identities=27% Similarity=0.322 Sum_probs=47.0
Q ss_pred CeEEEEEecC-CcEEEEEEcCCCcHHHHHHHHccc----cC--CCCC-CeEEEecCcc--cccCCcccccc-----cccc
Q 009518 76 GMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDK----EG--IPPD-QQRLIFAGKQ--LEDGRTLADYN-----IQKE 140 (533)
Q Consensus 76 ~~~i~vk~~~-g~~~~l~v~~~~tV~~lK~~i~~~----~g--ip~~-~q~L~~~G~~--L~d~~~l~~y~-----i~~~ 140 (533)
.+.|.|...+ ...+++.+++++|+.++.+.+-.+ .+ -+++ +-.|--.|+. |..+.+|.+|. ++.+
T Consensus 17 ~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~ 96 (108)
T smart00144 17 KILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNG 96 (108)
T ss_pred eEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcC
Confidence 3445554433 356999999999999998877654 11 2222 3445566753 56677777774 5667
Q ss_pred ccceeeee
Q 009518 141 STLHLVLR 148 (533)
Q Consensus 141 s~i~l~~~ 148 (533)
..++|++.
T Consensus 97 ~~~~L~L~ 104 (108)
T smart00144 97 REPHLVLM 104 (108)
T ss_pred CCceEEEE
Confidence 77777664
No 256
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=43.42 E-value=20 Score=29.12 Aligned_cols=27 Identities=41% Similarity=0.779 Sum_probs=21.0
Q ss_pred eEEEccEEcCCCCCccccccccccccce
Q 009518 42 RLIFAGKQLEDGRTLADYNIQKESTLHL 69 (533)
Q Consensus 42 ~l~~~g~~L~~~~tl~~y~i~~~sti~l 69 (533)
.|+|+|++|.++.+|++| +-.|.--.+
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKi 29 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKI 29 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeE
Confidence 488999999999999999 554444333
No 257
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=43.27 E-value=4e+02 Score=27.64 Aligned_cols=182 Identities=12% Similarity=0.133 Sum_probs=103.4
Q ss_pred ccccccCCCceEEEEEeecCCcee------------EEEccCCceEEEEe----ccCccHHHHHHHhccccCCCCCceeE
Q 009518 284 LADYNIQKESTLHLVLRLRGGMQI------------FVKTLTGKTITLEV----ESSDTIDNVKAKIQDKEGIPPDQQRL 347 (533)
Q Consensus 284 l~~~~i~~~~ti~l~~~~~~~~~i------------~v~~~~g~~~~~~v----~~~~ti~~lK~~i~~~~~ip~~~q~L 347 (533)
-.+|-|..||.+.+..--.+.... +....+|...--.+ -.+-|++++.+.|..++.
T Consensus 82 ~~~Y~igpGDvL~I~V~~~peL~~~~~~~~~~~~~g~~V~~dG~I~~P~vG~V~vaG~T~~e~~~~I~~~L~-------- 153 (379)
T PRK15078 82 NYEYRVGPGDVLNVTVWDHPELTTPAGQYRSASDTGNWVHADGTIFYPYIGKVHVAGKTVTEIRSDITGRLA-------- 153 (379)
T ss_pred CCCcEECCCCEEEEEEecCcccccccccccccccCCCEECCCCeEeeccCceEEECCCCHHHHHHHHHHHHH--------
Confidence 356899999999987654333221 23445554332111 267899999999997542
Q ss_pred EeccEEcCCCCcccccccccCCeEEEEEEecCCeeEEEEecCCcEEEEEecC-CCcHHHHHHHhhcccCCC-CcceeEee
Q 009518 348 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKEGIP-PDQQRLIF 425 (533)
Q Consensus 348 ~~~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~~~~i~vk~~~g~~~~~~v~~-~~Tv~~lK~~I~~~~~vp-~~~q~l~~ 425 (533)
.|- .+..+.+......+..|+|...-.+.-.+.+.+ ..|+.+.-..---...-. ..+-.+.-
T Consensus 154 --------------~~~--~~PqV~V~v~~~~s~~V~V~GeV~~PG~~~l~~~~~tlldaIa~AGG~~~~a~~~~V~l~R 217 (379)
T PRK15078 154 --------------KYI--ESPQVDVNIAAFRSQKAYVTGEVNKSGQQAITNVPLTILDAINAAGGLTDDADWRNVVLTH 217 (379)
T ss_pred --------------Hhc--cCCeEEEEEccCCceEEEEEceecCCeEEEecCCCccHHHHHHHccCCCcccccceEEEEE
Confidence 111 122334443344555677764444455667765 578887765533222111 11112223
Q ss_pred cCcc--------ccCCccccccccccCCeEEEEEEecCCeeeEEEeCCCCEEEEEec-CCCcHHHHHHHHhhhcC
Q 009518 426 AGKQ--------LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEG 491 (533)
Q Consensus 426 ~g~~--------l~d~~~L~~~~i~~~~~l~l~~~~~~~m~i~v~~~~g~~~~~~v~-~~~tV~~lK~~I~~~~g 491 (533)
+|.. +..+..-.+.-+++|+.|++-.. ....++|...-++.-.+.+. +..|+.|.-.+......
T Consensus 218 ~g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp~~--~~~~v~V~GeV~~Pg~~~~~~~~~TL~~Al~~AGGl~~ 290 (379)
T PRK15078 218 NGKEERISLQALMQNGDLSQNRLLYPGDILYVPRN--DDLKVFVMGEVKKQSTLKMDRSGMTLTEALGNAEGIDQ 290 (379)
T ss_pred CCeEEEEEHHHHHhcCCcccCceeCCCCEEEECCC--CCcEEEEeeecccceEEecCCCCCCHHHHHHhcCCCCc
Confidence 3332 12232234555788888877542 34578888777777788884 68899998887655543
No 258
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=42.82 E-value=92 Score=24.48 Aligned_cols=52 Identities=19% Similarity=0.420 Sum_probs=39.5
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEE-cCeecCCCCcccccCCCCCCEEEEE
Q 009518 466 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 466 g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~-~g~~L~d~~tL~~~~I~~~~~l~l~ 526 (533)
+..+.+.+.+..||+++-+. .|||..+--+++ ||+...-+ |-+++|+.|.+.
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVY 74 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEE
Confidence 45677888999999876554 699999997765 89887765 445568888765
No 259
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=42.76 E-value=86 Score=33.41 Aligned_cols=70 Identities=14% Similarity=0.167 Sum_probs=53.6
Q ss_pred eEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCC------CCCCeeEE-ecCccccCCccccccccCCCceEEEEEe
Q 009518 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI------PPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 230 ~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gi------p~~~q~L~-~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
.|.|... .+.+.+-+..+-.|.++--.|.+..+- +.....|. .+|..++.++||.+.+|.||+.+++...
T Consensus 4 RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~ 80 (452)
T TIGR02958 4 RVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPA 80 (452)
T ss_pred EEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeC
Confidence 3445543 345778888899999999988887753 22334554 4888999999999999999999999864
No 260
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=42.01 E-value=88 Score=32.09 Aligned_cols=70 Identities=23% Similarity=0.272 Sum_probs=52.7
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhc--CCCCCcEEEEEc----Cee--cCCCCcccccCCCCCCEEEEEE
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~--gip~~~q~L~~~----g~~--L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
|-+.++...| .+.+++.++++.+.|-.++-+.. +-.|++..+.-+ |.. +..++|+.+.|+..|..|+|..
T Consensus 1 Mi~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 4456677777 48899999999999888887765 455667766542 222 3456899999999999999876
No 261
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=41.44 E-value=58 Score=31.66 Aligned_cols=73 Identities=15% Similarity=0.229 Sum_probs=56.3
Q ss_pred CCeeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEe--ecCcccc---CCccccccccccCCeEEEEE
Q 009518 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 451 (533)
Q Consensus 379 ~~~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~--~~g~~l~---d~~~L~~~~i~~~~~l~l~~ 451 (533)
..+.+.|+..+|++++.+++...|...+...+.-+.+.-.+--.|. |+-..+. -.++|..+++-+.+++.|..
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil~~ 286 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLILEP 286 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheeccc
Confidence 3467889999999999999999999999999999988766443444 5555553 34788888888877776643
No 262
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=40.09 E-value=1.4e+02 Score=21.98 Aligned_cols=59 Identities=15% Similarity=0.316 Sum_probs=40.9
Q ss_pred ccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEEEE
Q 009518 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
+.||+.+ ++..+.|+.++-+. +++++..-.+..+|..++-.. -.+.-++++|.+.+...
T Consensus 4 ~vNG~~~--~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 4 QLNGEPR--ELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHA 62 (66)
T ss_pred EECCeEE--EcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEE
Confidence 3567754 55677898888654 577877777777887666443 34555899999998854
No 263
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=39.90 E-value=97 Score=23.89 Aligned_cols=39 Identities=21% Similarity=0.413 Sum_probs=31.8
Q ss_pred CCcEEE-EEEcCCCcHHHHHHHHccccCCCCCCeEEEecC
Q 009518 85 TGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (533)
Q Consensus 85 ~g~~~~-l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G 123 (533)
.|.... +.+.++.|..+|+.+|+.+.+.+.....+.|..
T Consensus 9 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 9 GGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp TTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 344444 889999999999999999999987777777764
No 264
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=39.79 E-value=1.3e+02 Score=24.01 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=32.0
Q ss_pred cCccHHHHHHHhc-cccCCCC-C---ceeEEec-cE---EcCCCCcccccccccCCeEEEEEE
Q 009518 323 SSDTIDNVKAKIQ-DKEGIPP-D---QQRLIFA-GK---QLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 323 ~~~ti~~lK~~i~-~~~~ip~-~---~q~L~~~-g~---~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
...|+.++-.+|. .++|... + ..+++|. +. .-..+++|++++|.+|+.|.+.-.
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D~ 69 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDDF 69 (87)
T ss_dssp TT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEET
T ss_pred hhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEEc
Confidence 3469999999875 5777644 2 2234442 22 334578999999999999988754
No 265
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=39.68 E-value=42 Score=24.55 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=36.4
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEE
Q 009518 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
|.|.+++|+... +..+.|+.|+-..|...++=..- .=..+|+. .-.+|.+++++++.+.
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~~~--~A~Vng~~-----vdl~~~L~~~d~v~ii 59 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKRAV--AAKVNGQL-----VDLDHPLEDGDVVEII 59 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHCEE--EEEETTEE-----EETTSBB-SSEEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhhee--EEEEcCEE-----CCCCCCcCCCCEEEEE
Confidence 456678888776 77889999999999965431111 01123433 3345666777777664
No 266
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=39.47 E-value=55 Score=27.11 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=32.4
Q ss_pred EEecCCCcHHHHHHHHhhhcCCCCCc-EEEEEcCeecCCCCcccc
Q 009518 471 LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLAD 514 (533)
Q Consensus 471 ~~v~~~~tV~~lK~~I~~~~gip~~~-q~L~~~g~~L~d~~tL~~ 514 (533)
+=|+.+.||+++...|..+..+++++ .-|+.++..+..+.|+++
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHH
T ss_pred EEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHH
Confidence 34789999999999999999998875 344557755567777765
No 267
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=39.37 E-value=53 Score=27.91 Aligned_cols=55 Identities=20% Similarity=0.461 Sum_probs=38.1
Q ss_pred ecC-CchHHHHHHHhhhh----cCCCCC------CeEEEeC-----------------Ceec---CCCCCcccccCCCCC
Q 009518 169 VES-SDTIDNVKAKIQDK----EGIPPD------QQRLIFA-----------------GKQL---EDGRTLADYNIQKES 217 (533)
Q Consensus 169 v~~-~dtV~~lK~~i~~~----~gip~~------~q~L~~~-----------------g~~L---~d~~tl~~y~I~~~s 217 (533)
|+. +.||.+|++.+.+. -|+||- ..++.+. +..| +++.+|.++||.++.
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 665 78999988877653 456542 2333322 1456 778999999999999
Q ss_pred EEEEEE
Q 009518 218 TLHLVL 223 (533)
Q Consensus 218 ~i~l~~ 223 (533)
.|.++-
T Consensus 102 EiSfF~ 107 (122)
T PF10209_consen 102 EISFFN 107 (122)
T ss_pred eeeeeC
Confidence 998764
No 268
>PRK01777 hypothetical protein; Validated
Probab=38.97 E-value=1.9e+02 Score=23.45 Aligned_cols=65 Identities=11% Similarity=0.118 Sum_probs=41.3
Q ss_pred CeeeEEEe-CCC--CEEEEEecCCCcHHHHHHHHhhhcCCCCC--c-----EEEEEcCeecCCCCcccccCCCCCCEEEE
Q 009518 456 GMQIFVKT-LTG--KTITLEVESSDTIDNVKAKIQDKEGIPPD--Q-----QRLIFAGKQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 456 ~m~i~v~~-~~g--~~~~~~v~~~~tV~~lK~~I~~~~gip~~--~-----q~L~~~g~~L~d~~tL~~~~I~~~~~l~l 525 (533)
.|+|.|-. ... ....++++...||.++-... ||+.. + -.+.-+|+....++.| ++|+.|.+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~d~~L-----~dGDRVeI 73 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKLTDVL-----RDGDRVEI 73 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCCCCcC-----CCCCEEEE
Confidence 35555543 222 23677889999999987775 55554 2 3455577777655544 55999987
Q ss_pred EEec
Q 009518 526 VLRL 529 (533)
Q Consensus 526 ~~~l 529 (533)
.-+|
T Consensus 74 yrPL 77 (95)
T PRK01777 74 YRPL 77 (95)
T ss_pred ecCC
Confidence 6554
No 269
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=38.87 E-value=1.1e+02 Score=24.04 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=29.2
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCC--CCCcEEEE
Q 009518 468 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI 500 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~~gi--p~~~q~L~ 500 (533)
..++.|++++|+.++-..+..++++ ++.+..|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 8899999999999999999999999 56666773
No 270
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=38.77 E-value=1.3e+02 Score=22.12 Aligned_cols=58 Identities=16% Similarity=0.330 Sum_probs=38.0
Q ss_pred CCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEee
Q 009518 237 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 301 (533)
Q Consensus 237 ~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~ 301 (533)
+|+.+. +....|+.+|.+.+ ++++..-....||+....++ ..++-+++||.+.++..-
T Consensus 4 Ng~~~~--~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~~-~~~~~L~~gD~veii~~V 61 (64)
T TIGR01683 4 NGEPVE--VEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRSE-WDDTILKEGDRIEIVTFV 61 (64)
T ss_pred CCeEEE--cCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHHH-cCceecCCCCEEEEEEec
Confidence 444444 45667888887654 56666677778888764332 334568999999887543
No 271
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=38.34 E-value=80 Score=26.24 Aligned_cols=49 Identities=10% Similarity=0.247 Sum_probs=37.4
Q ss_pred eEEEEcCCC----cEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEc
Q 009518 2 QIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (533)
Q Consensus 2 ~i~~~~~~g----~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L 50 (533)
+|-++..++ +.-.+-|.+++|+..+-..+++..+++.+.|-+.|=....
T Consensus 32 ~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 32 QIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred EEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 344554443 4456789999999999999999999999998777754444
No 272
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=38.11 E-value=61 Score=25.29 Aligned_cols=49 Identities=20% Similarity=0.464 Sum_probs=33.0
Q ss_pred ccHHHHHHHhccccCCCCCceeEEe--ccEEcCCCCcccccccccCCeEEEEEE
Q 009518 325 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 325 ~ti~~lK~~i~~~~~ip~~~q~L~~--~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
.+.+||+.+.+++++++.+.-+|+. .|.+++|+..+... +..|..+...
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL---p~nT~lm~L~ 71 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL---PDNTVLMLLE 71 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS---SSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC---CCCCEEEEEC
Confidence 5899999999999999977676665 57776666544433 3344444443
No 273
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=37.23 E-value=1.7e+02 Score=22.46 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=52.0
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEEE-EEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 009518 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 531 (533)
Q Consensus 469 ~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L-~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~G 531 (533)
..+.|+.+.....+-+-.++++++|+..--+ .-+|.-++..+|-..+=++.|+.+.|.-|=|=
T Consensus 18 kvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDrv 81 (82)
T cd01766 18 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRV 81 (82)
T ss_pred eEEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccccC
Confidence 4568888887888778888889998876654 56799999999999999999999999887663
No 274
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=36.38 E-value=45 Score=37.24 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=42.9
Q ss_pred CCCEEEEEecC-CCcHHHHHHHHhhhcCCCCCcEEEEE-cCeecCCCCcccccC
Q 009518 465 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN 516 (533)
Q Consensus 465 ~g~~~~~~v~~-~~tV~~lK~~I~~~~gip~~~q~L~~-~g~~L~d~~tL~~~~ 516 (533)
.|+..+++... ..|+++||..|+.+.|+...+|.+.- +|..+..++.|+.|.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~S 56 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEIS 56 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhc
Confidence 46677777764 66999999999999999999998765 677888888888875
No 275
>PRK07440 hypothetical protein; Provisional
Probab=35.75 E-value=1.7e+02 Score=22.06 Aligned_cols=63 Identities=16% Similarity=0.260 Sum_probs=40.4
Q ss_pred CeeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEeecCccccCCccccccccccCCeEEEEEE
Q 009518 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (533)
Q Consensus 380 ~~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~~L~~~~i~~~~~l~l~~~ 452 (533)
.|.|. .+|+. .++.++.|+.+|-+. .++++..--.-.++..+.-+. ..+.-++.|+.+.++.-
T Consensus 4 ~m~i~---vNG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~~N~~iv~r~~-w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 4 PITLQ---VNGET--RTCSSGTSLPDLLQQ----LGFNPRLVAVEYNGEILHRQF-WEQTQVQPGDRLEIVTI 66 (70)
T ss_pred ceEEE---ECCEE--EEcCCCCCHHHHHHH----cCCCCCeEEEEECCEEeCHHH-cCceecCCCCEEEEEEE
Confidence 45554 45764 566788999988765 566665545557776664322 45666778888887653
No 276
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=35.74 E-value=1.6e+02 Score=22.98 Aligned_cols=48 Identities=15% Similarity=0.344 Sum_probs=33.0
Q ss_pred CceEEEEeccCccHHHHHHHhccccCCCCCceeEEe--ccEEcCCCCcccc
Q 009518 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLAD 362 (533)
Q Consensus 314 g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~--~g~~L~~~~tl~~ 362 (533)
.++...-|-. .+.++|+.+.++++++|...-+|+. .|.+++++..+..
T Consensus 11 ~r~~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~t 60 (78)
T cd01615 11 DRSRKKGVAA-SSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQT 60 (78)
T ss_pred CCCeeEEEEc-CCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhc
Confidence 3344444433 4899999999999999765555554 6888777665544
No 277
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=35.34 E-value=2.4e+02 Score=24.99 Aligned_cols=111 Identities=22% Similarity=0.349 Sum_probs=71.3
Q ss_pred EEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccc----cceEEEec-CCeEEEEEecCC
Q 009518 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST----LHLVLRLR-GGMQIFVKTLTG 86 (533)
Q Consensus 12 ~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~st----i~l~~~~~-~~~~i~vk~~~g 86 (533)
-||-+.-.-+|.+.+=.++.+-.|| .+.+.+|..|+..- -|+...+.. -+-.+... ..+.+.|+.
T Consensus 5 IfP~R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v--- 74 (153)
T PF02505_consen 5 IFPHRLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKTV---PYGPARGTPVNHPDRKVINVGGEEVELTVKV--- 74 (153)
T ss_pred EechhcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCCC---CCCCCCCCcCCCCcceEEEECCEEEEEEEEE---
Confidence 3566677778999998888886665 56889999987421 344433332 22222222 245555542
Q ss_pred cEEEEEEcC-CCcHHHHHHHHccccCCCCCCeEEEecCcccccCCcccccc
Q 009518 87 KTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136 (533)
Q Consensus 87 ~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~ 136 (533)
-.+.++++. .+.+..+++-.++...++-+ +..|+-+....|++||-
T Consensus 75 Gri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY~ 121 (153)
T PF02505_consen 75 GRIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDYA 121 (153)
T ss_pred eEEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhhh
Confidence 246778887 77788888777765533221 23589999999999993
No 278
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=34.38 E-value=34 Score=27.79 Aligned_cols=24 Identities=46% Similarity=0.847 Sum_probs=19.4
Q ss_pred EEEecCcccccCCcccccccccccc
Q 009518 118 RLIFAGKQLEDGRTLADYNIQKEST 142 (533)
Q Consensus 118 ~L~~~G~~L~d~~~l~~y~i~~~s~ 142 (533)
.|.|+|++|..+.+|++| +..+..
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEK 26 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEK 26 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcc
Confidence 478999999999999999 444443
No 279
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=33.84 E-value=80 Score=24.34 Aligned_cols=46 Identities=17% Similarity=0.395 Sum_probs=32.6
Q ss_pred eEEEEeccCccHHHHHHHhccccCCCCCceeEEe--ccEEcCCCCcccc
Q 009518 316 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLAD 362 (533)
Q Consensus 316 ~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~--~g~~L~~~~tl~~ 362 (533)
+...-|-. .+.++|+.+.++++++|...-+|+. .|..++++..+..
T Consensus 11 ~~k~GV~A-~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~t 58 (74)
T smart00266 11 NVRKGVAA-SSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQT 58 (74)
T ss_pred CeeEEEEc-CCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhc
Confidence 33333433 4899999999999999976566654 6888877665544
No 280
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=33.69 E-value=93 Score=24.34 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=34.0
Q ss_pred eCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEE
Q 009518 463 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 501 (533)
Q Consensus 463 ~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~ 501 (533)
...|.+..+.++..-|-+.|+++|+..+.+|++..-+.|
T Consensus 6 ~~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 6 SFLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred EeCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 345667888888899999999999999999998888877
No 281
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=32.89 E-value=74 Score=35.62 Aligned_cols=62 Identities=18% Similarity=0.378 Sum_probs=48.9
Q ss_pred CCCeEEEEeec-CccHHHHHHHhhhhcCCCCCCeeEEe-cCccccCCccccccccCCC--ceEEEE
Q 009518 237 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKE--STLHLV 298 (533)
Q Consensus 237 ~g~~i~~~v~~-~~tV~~lK~~I~~~~gip~~~q~L~~-~g~~L~d~~tl~~~~i~~~--~ti~l~ 298 (533)
.|.+.+|..+. ..|+.+||.+|+...|+...++.|.- .|..|.-++.+..|.-... +.|+++
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 57788888874 56999999999999999888887775 6778899999999975544 445444
No 282
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=31.89 E-value=77 Score=26.61 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=39.7
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEE-EEcCeecCCCCcccc----cCCCCCCEEEEEEe
Q 009518 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQLEDGRTLAD----YNIQKESTLHLVLR 528 (533)
Q Consensus 470 ~~~v~~~~tV~~lK~~I~~~~gip~~~q~L-~~~g~~L~d~~tL~~----~~I~~~~~l~l~~~ 528 (533)
.+-|+.+.||+++...|..+.++++++-.. +.++.....+.++++ |+-.+| -|++...
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DG-fLyl~Ys 106 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDG-FLYMTYS 106 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCC-EEEEEEe
Confidence 345999999999999999999999887544 446644445555443 333344 6777654
No 283
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=31.67 E-value=1.7e+02 Score=22.32 Aligned_cols=59 Identities=17% Similarity=0.253 Sum_probs=45.1
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE-EcCeecCCCCcccccCCCCCCEEEEE
Q 009518 468 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~g~~L~d~~tL~~~~I~~~~~l~l~ 526 (533)
-..+.|+.+.....+-+..++.+.+|+..--++ -+|.-+...+|-.+.-++.|+.|.|.
T Consensus 17 ~kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrli 76 (76)
T PF03671_consen 17 YKVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRLI 76 (76)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEEE
T ss_pred ceEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeeeC
Confidence 356789988888888888888899999887765 47999999999998888899988763
No 284
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=31.67 E-value=1.8e+02 Score=23.77 Aligned_cols=73 Identities=22% Similarity=0.399 Sum_probs=43.4
Q ss_pred CCeEEEEEec-CCcEEEEEEcCCCcHHHHHHHHccc--cCCCCC----CeEEEecCcc--cccCCcccccc-----cccc
Q 009518 75 GGMQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD----QQRLIFAGKQ--LEDGRTLADYN-----IQKE 140 (533)
Q Consensus 75 ~~~~i~vk~~-~g~~~~l~v~~~~tV~~lK~~i~~~--~gip~~----~q~L~~~G~~--L~d~~~l~~y~-----i~~~ 140 (533)
+.+.|.|... .+..+++.++.+.|+.++-+++-.+ .+..+. .-.|--.|+. |..+.+|.+|. +..+
T Consensus 15 ~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~ 94 (106)
T PF00794_consen 15 NKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRG 94 (106)
T ss_dssp SEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT
T ss_pred CeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcC
Confidence 3456666666 4567999999999999998888766 222221 3344456643 56777788774 3445
Q ss_pred ccceeee
Q 009518 141 STLHLVL 147 (533)
Q Consensus 141 s~i~l~~ 147 (533)
..++|.+
T Consensus 95 ~~~~L~L 101 (106)
T PF00794_consen 95 KDPHLVL 101 (106)
T ss_dssp --EEEEE
T ss_pred CCcEEEE
Confidence 5555544
No 285
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=31.54 E-value=1.3e+02 Score=26.23 Aligned_cols=87 Identities=22% Similarity=0.323 Sum_probs=58.1
Q ss_pred CcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCC------------ccccccccccccceEEEecCCeEEEEEecCC
Q 009518 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT------------LADYNIQKESTLHLVLRLRGGMQIFVKTLTG 86 (533)
Q Consensus 19 ~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~t------------l~~y~i~~~sti~l~~~~~~~~~i~vk~~~g 86 (533)
|+-.|+.+-.|.+-......+.=...++|+.|++... |+.|.+..+..-...-.-.++..+.|++-.|
T Consensus 23 Pt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~tKkG 102 (149)
T PF10787_consen 23 PTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVIDTKKG 102 (149)
T ss_pred cHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEEeccC
Confidence 6677888877776655566666678999999987532 4456676665533333335677889998888
Q ss_pred cE-EEEEEcC-CCcHHHHHHH
Q 009518 87 KT-ITLEVES-SDTIDNVKAK 105 (533)
Q Consensus 87 ~~-~~l~v~~-~~tV~~lK~~ 105 (533)
+. +.+.+-+ +|-|.-+|+.
T Consensus 103 K~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 103 KKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred cceeEEEEEecccHHHHHHHh
Confidence 64 7777644 5566666655
No 286
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=31.47 E-value=63 Score=25.59 Aligned_cols=55 Identities=16% Similarity=0.282 Sum_probs=38.0
Q ss_pred EEecCCCcHHHHHHHHhhhcCCCCC-------cEEEEEcCe-ecC------CCCcccccCCCCCCEEEEE
Q 009518 471 LEVESSDTIDNVKAKIQDKEGIPPD-------QQRLIFAGK-QLE------DGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 471 ~~v~~~~tV~~lK~~I~~~~gip~~-------~q~L~~~g~-~L~------d~~tL~~~~I~~~~~l~l~ 526 (533)
++|+++.|+.+|-..+++...+... .-.|++.+- .|+ =+++|.+. +.+|+.|.++
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 5789999999999999998534333 334444332 232 14789999 9999888775
No 287
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=31.23 E-value=91 Score=24.76 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=32.7
Q ss_pred eEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCce
Q 009518 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 345 (533)
Q Consensus 307 i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q 345 (533)
|-|-..+|.+.++.|....|+.++..++.+|.+..++.-
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~ 43 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSS 43 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCC
Confidence 344558899999999999999999999999998766543
No 288
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=31.17 E-value=1.3e+02 Score=24.54 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=33.4
Q ss_pred EEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEe
Q 009518 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 121 (533)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~ 121 (533)
++..+|.+--+.|+.+.|..+|+.++.+..+++.. ..|-|
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 45678999999999999999999999999888765 45444
No 289
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=30.71 E-value=1.9e+02 Score=21.30 Aligned_cols=56 Identities=11% Similarity=0.161 Sum_probs=38.8
Q ss_pred CCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEe
Q 009518 237 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 237 ~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
+|+.+.+ .+..|+.+|-. ..++++..-...++++.+.-+..= .+ +++||.|.++..
T Consensus 6 NG~~~~~--~~~~tl~~ll~----~l~~~~~~vav~~N~~iv~r~~~~-~~-L~~gD~ieIv~~ 61 (65)
T PRK05863 6 NEEQVEV--DEQTTVAALLD----SLGFPEKGIAVAVDWSVLPRSDWA-TK-LRDGARLEVVTA 61 (65)
T ss_pred CCEEEEc--CCCCcHHHHHH----HcCCCCCcEEEEECCcCcChhHhh-hh-cCCCCEEEEEee
Confidence 4555544 45678877644 357888888888999877544443 35 899999988754
No 290
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=29.19 E-value=28 Score=35.50 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=43.5
Q ss_pred ecCCcEEEEEEc-CCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCcc
Q 009518 83 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (533)
Q Consensus 83 ~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l 132 (533)
..+|....+.+. .++.+..+|+++.+..++++..|.+.+.|..|.|+..+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 467788787777 78899999999999999999999999999999887443
No 291
>PRK08453 fliD flagellar capping protein; Validated
Probab=29.06 E-value=1.4e+02 Score=33.38 Aligned_cols=86 Identities=22% Similarity=0.324 Sum_probs=53.2
Q ss_pred ccCCceEEEEeccCccHHHHHHHhcc-----------ccCCCCCceeEEeccEEcCC------CCcccccccccCCeEEE
Q 009518 311 TLTGKTITLEVESSDTIDNVKAKIQD-----------KEGIPPDQQRLIFAGKQLED------GRTLADYNIQKESTLHL 373 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~i~~-----------~~~ip~~~q~L~~~g~~L~~------~~tl~~y~i~~~~~l~l 373 (533)
+..|+++++.|..++|+++|+.+|=+ +.| ....++|+..+...-. +.+|+.-.+..+.--.+
T Consensus 134 ~~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG-~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~ 212 (673)
T PRK08453 134 YTQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTG-GNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLV 212 (673)
T ss_pred EECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecC-CCccEEEEEeccCcCCCceEEEeccccccccCCcccccc
Confidence 45699999999999999999999984 222 1124677765443332 33444444444331112
Q ss_pred EEEecCCeeEEEEecCCcEEEEEe
Q 009518 374 VLRLRGGMQIFVKTLTGKTITLEV 397 (533)
Q Consensus 374 ~~~~~~~~~i~vk~~~g~~~~~~v 397 (533)
-+...+...|.+|..+|+.+++.+
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 213 DGSGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccccceeeeeccCCccccccc
Confidence 222245567888989997775544
No 292
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=27.97 E-value=2.2e+02 Score=22.68 Aligned_cols=58 Identities=7% Similarity=0.103 Sum_probs=40.2
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEE-EEEcCe-ecCCCCc---ccccCCCCCCEEEEEE
Q 009518 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK-QLEDGRT---LADYNIQKESTLHLVL 527 (533)
Q Consensus 469 ~~~~v~~~~tV~~lK~~I~~~~gip~~~q~-L~~~g~-~L~d~~t---L~~~~I~~~~~l~l~~ 527 (533)
..+.|+.+.|++++...|..+.++++++-. |+.+.. ....+.+ |.++- .++.-|++..
T Consensus 18 ~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Y 80 (87)
T cd01612 18 KVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSY 80 (87)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEE
Confidence 456699999999999999999999887644 444554 2233344 55555 5566677665
No 293
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=27.77 E-value=81 Score=23.97 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=32.6
Q ss_pred CcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEE
Q 009518 477 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 477 ~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l 525 (533)
.|+++|....++++|++ ..-.+.-+|-+++|=..+ .+|+.|++
T Consensus 26 ~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~I-----RDgD~L~~ 68 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS-ATKVLNEDGAEIDDIDVI-----RDGDHLYL 68 (69)
T ss_pred ccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEEE-----EcCCEEEE
Confidence 69999999999999997 455566677777764444 44777765
No 294
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=27.60 E-value=53 Score=27.98 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=34.2
Q ss_pred cEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEe-cCcccccCCcccc
Q 009518 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD 134 (533)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-~G~~L~d~~~l~~ 134 (533)
+.--+-|+.+.||+++..-|..+.++++++ ..+| ++..+..+.++.+
T Consensus 41 K~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAIEGSTPAVTATVGD 88 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEECCccCCccchHHH
Confidence 344446899999999999999999999988 4444 4444455556655
No 295
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=27.51 E-value=1.6e+02 Score=23.69 Aligned_cols=40 Identities=13% Similarity=0.286 Sum_probs=31.4
Q ss_pred ccCCceEEEEec-----cCccHHHHHHHhccccCCCC-CceeEEec
Q 009518 311 TLTGKTITLEVE-----SSDTIDNVKAKIQDKEGIPP-DQQRLIFA 350 (533)
Q Consensus 311 ~~~g~~~~~~v~-----~~~ti~~lK~~i~~~~~ip~-~~q~L~~~ 350 (533)
+++|.++.+.+. ++-+.++|+++|++.+++++ ....|.|.
T Consensus 6 ~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~ 51 (91)
T cd06398 6 KYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYT 51 (91)
T ss_pred EeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEE
Confidence 466777777776 46899999999999999988 55556663
No 296
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=27.37 E-value=1.6e+02 Score=22.93 Aligned_cols=34 Identities=24% Similarity=0.528 Sum_probs=27.8
Q ss_pred CcHHHHHHHHhhhcCCCCCcEEEEE--cCeecCCCC
Q 009518 477 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGR 510 (533)
Q Consensus 477 ~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~d~~ 510 (533)
.+..+|+.+..+..+++.+.-+|.. +|..++|+.
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEe 56 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEE 56 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCH
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHH
Confidence 6899999999999999977776655 799988764
No 297
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.63 E-value=1.5e+02 Score=28.91 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=56.2
Q ss_pred cceeeeeeeccCceEEeeecCCchHHHHHHHhhhhcCCCCCCeEEEeC--CeecC-C--CCCcccccCCCCCEEEE
Q 009518 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE-D--GRTLADYNIQKESTLHL 221 (533)
Q Consensus 151 ~~~~i~v~~~~g~~~~i~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~--g~~L~-d--~~tl~~y~I~~~s~i~l 221 (533)
....+.|+..+|+++....++..+...++.-|.-+.+...+.+.|.-+ .+... | .++|...++.+.+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 456788888999999999999999999999999998877766666532 33442 2 37888899988888765
No 298
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=26.16 E-value=4.7e+02 Score=23.29 Aligned_cols=140 Identities=18% Similarity=0.188 Sum_probs=69.2
Q ss_pred cccccCCeEEEEEEecCCee--EEEEecCCcEE-----EEEecCCCcHHHHHHHhhcccCCCCcceeEeecCccccCCcc
Q 009518 363 YNIQKESTLHLVLRLRGGMQ--IFVKTLTGKTI-----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 435 (533)
Q Consensus 363 y~i~~~~~l~l~~~~~~~~~--i~vk~~~g~~~-----~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~~ 435 (533)
|-|.+||.|.+.....+..+ +.| ..+|... .+.+ .+.|+.++.+.|++++.
T Consensus 1 Y~l~pGD~l~i~v~~~~~~~~~~~V-~~dG~I~lP~iG~v~v-~G~T~~e~~~~I~~~l~-------------------- 58 (165)
T TIGR03027 1 YVIGPGDSLNINVWRNPELSGSVPV-RPDGKITTPLVGDLVA-SGKTPTQLARDIEEKLA-------------------- 58 (165)
T ss_pred CCcCCCCEEEEEEcCCcccccceEE-CCCCeEeecccCeEEE-CCCCHHHHHHHHHHHHH--------------------
Confidence 45667777776654333322 222 2333221 1222 68999999999999852
Q ss_pred ccccccccCCeEEEEEEe-cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCC-CCcEEEEE--cCe--ec---
Q 009518 436 LADYNIQKESTLHLVLRL-RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIF--AGK--QL--- 506 (533)
Q Consensus 436 L~~~~i~~~~~l~l~~~~-~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip-~~~q~L~~--~g~--~L--- 506 (533)
.|=..+.-++.+..-. +....++|...-.+.-.+.+.+..|+.++-....-...-. ...-.+.- +|+ ..
T Consensus 59 --~~~~~p~v~V~v~~~~~~~~~~V~V~GeV~~PG~y~~~~~~tl~~ai~~AGG~~~~a~~~~v~i~R~~~~~~~~~~id 136 (165)
T TIGR03027 59 --KYVRNPVVTVIVTGFIGPFSEQIRVVGAAANPQALPYREGMTLLDVMIAVGGLTDFADGNRAVIVRTVDGEQKQISVR 136 (165)
T ss_pred --HhccCCeEEEEEeecccCCCcEEEEEEEeCCCceeeeCCCCcHHHHHHHcCCCCcccCCCeEEEEECCCCceEEEEEE
Confidence 1100111122222111 1234566654333344456678888887766644332211 22334443 232 11
Q ss_pred -----CCCCcccccCCCCCCEEEEE
Q 009518 507 -----EDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 507 -----~d~~tL~~~~I~~~~~l~l~ 526 (533)
.++..=.+.-+++||+|++-
T Consensus 137 l~~l~~~g~~~~n~~L~~gD~I~Vp 161 (165)
T TIGR03027 137 LKDLIKDGDVTANVELKPGDVLIIP 161 (165)
T ss_pred HHHHhhcCCccCCceeCCCCEEEEe
Confidence 11222245568899998874
No 299
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=24.84 E-value=3.6e+02 Score=23.79 Aligned_cols=111 Identities=21% Similarity=0.381 Sum_probs=69.0
Q ss_pred EEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCcccccccccccc----ceEEEec-CCeEEEEEecCC
Q 009518 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL----HLVLRLR-GGMQIFVKTLTG 86 (533)
Q Consensus 12 ~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti----~l~~~~~-~~~~i~vk~~~g 86 (533)
-||-++-.-+|.+.+=.++.+-.|| .+++.+|..|+..- -|+...+... +=.+... ..+.+.|+. |
T Consensus 4 IfP~R~L~~eTtEklLN~l~~i~gI----~R~vIhGp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~V--G 74 (150)
T TIGR03260 4 IFPHRLLKAETTEKLLNKLYDLDGI----LRVVIHGQRLPKKV---PYGPARGLPVNHPDRKTIRVKGEDVELRVQV--G 74 (150)
T ss_pred EechhhCCHHHHHHHHHHhhccCCE----EEEEEECCCCCCCC---CCCcccCCCCCCCcceEEEECCEEEEEEEEE--e
Confidence 3555666778888888888776665 46889999987532 2444333221 2222222 235555542 2
Q ss_pred cEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCcccccc
Q 009518 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136 (533)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~ 136 (533)
.+-+++...+.+.++++-..+..-++-+ +..|+-+....|++||-
T Consensus 75 -rI~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY~ 119 (150)
T TIGR03260 75 -RIILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDYI 119 (150)
T ss_pred -EEEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhhh
Confidence 4667777778888888777765543321 24478889999999984
No 300
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=24.26 E-value=2.7e+02 Score=24.68 Aligned_cols=109 Identities=23% Similarity=0.393 Sum_probs=69.1
Q ss_pred ecCCCcHHHHHHHhhcccCCCCcceeEeecCccccCCccccccccccCCeE----EEEEEe-cCCeeeEEEeCCCCEEEE
Q 009518 397 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL----HLVLRL-RGGMQIFVKTLTGKTITL 471 (533)
Q Consensus 397 v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~~L~~~~i~~~~~l----~l~~~~-~~~m~i~v~~~~g~~~~~ 471 (533)
+-.-+|.+.|-..|.+..|| .+.+..|..|.... .||...|..+ .-.... ...+.+.|+. | .+.+
T Consensus 10 ~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v--G-ri~l 79 (153)
T PF02505_consen 10 LLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKTV---PYGPARGTPVNHPDRKVINVGGEEVELTVKV--G-RIIL 79 (153)
T ss_pred cCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCCC---CCCCCCCCcCCCCcceEEEECCEEEEEEEEE--e-EEEE
Confidence 34457888899998887665 46677777775544 4555444321 111111 2345555554 3 3778
Q ss_pred EecC-CCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCC
Q 009518 472 EVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 520 (533)
Q Consensus 472 ~v~~-~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~ 520 (533)
++.. .+.+..+++..++....+.+ +..|+-+....|+.|| ++.|
T Consensus 80 ele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY-~KyG 124 (153)
T PF02505_consen 80 ELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY-AKYG 124 (153)
T ss_pred EecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh-hhcC
Confidence 8888 78888888887776533322 2358999999999998 4444
No 301
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=24.16 E-value=41 Score=34.34 Aligned_cols=51 Identities=35% Similarity=0.569 Sum_probs=45.7
Q ss_pred ccCCceEEEEec-cCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCccc
Q 009518 311 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361 (533)
Q Consensus 311 ~~~g~~~~~~v~-~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~ 361 (533)
..+|.++.+.+. .+..+..+|.+|.+..+|++..|.+.+.|..|.|+..++
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~~ 340 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSLA 340 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCcccccc
Confidence 688999988887 888999999999999999999999999999999885543
No 302
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=23.18 E-value=2.8e+02 Score=23.14 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=31.2
Q ss_pred CeEEEEcCCCc--EEEEEecCcccHHHHHHHHHhhhCC
Q 009518 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKEGI 36 (533)
Q Consensus 1 ~~i~~~~~~g~--~~~~~v~~~dtv~~ik~ki~~~~~i 36 (533)
|..|+.+.+++ +-.++|..++|+.+|.+-+-+|..+
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~ 61 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRP 61 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcc
Confidence 77899999886 5559999999999999999998874
No 303
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=23.06 E-value=3.5e+02 Score=27.49 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=32.5
Q ss_pred EEeccCccHHHHHHHhccccCCCCCceeEEec-cEEcCCCCcccccccccCCeEEEEE
Q 009518 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVL 375 (533)
Q Consensus 319 ~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~-g~~L~~~~tl~~y~i~~~~~l~l~~ 375 (533)
+.+..+.||.|++++|..-+-=... +-++.+ ...-+..+.=.+|-+.++|.+.++.
T Consensus 308 lIlr~GsTV~Dvc~~IH~~l~~~Fr-yA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~~ 364 (365)
T COG1163 308 LILRRGSTVGDVCRKIHRDLVENFR-YARVWGKSVKHPGQRVGLDHVLEDEDIVEIHA 364 (365)
T ss_pred eEEeCCCcHHHHHHHHHHHHHHhcc-eEEEeccCCCCCccccCcCcCccCCCeEEEee
Confidence 6678899999999999863322221 222221 1222233333566677777777653
No 304
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=23.03 E-value=1.3e+02 Score=23.37 Aligned_cols=38 Identities=13% Similarity=0.226 Sum_probs=28.5
Q ss_pred ccHHHHHHHhccccCCCCCceeEEe--ccEEcCCCCcccc
Q 009518 325 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLAD 362 (533)
Q Consensus 325 ~ti~~lK~~i~~~~~ip~~~q~L~~--~g~~L~~~~tl~~ 362 (533)
.+.+||+.+.+++++++...-+|+. .|..++++..+..
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~EeyF~~ 60 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEEFFQT 60 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHHHHhh
Confidence 4899999999999999876555543 6777776655543
No 305
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=22.58 E-value=1.5e+02 Score=23.88 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=32.6
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEE-EEcCe
Q 009518 466 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK 504 (533)
Q Consensus 466 g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L-~~~g~ 504 (533)
.+.+++.|++.+|=.++|..++..+|+++..-+- ...|+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk 59 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGK 59 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCc
Confidence 4689999999999999999999999999977653 34443
No 306
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=22.30 E-value=3.7e+02 Score=21.96 Aligned_cols=71 Identities=23% Similarity=0.398 Sum_probs=42.5
Q ss_pred eeeEEEeC-CCCEEEEEecCCCcHHHHHHHHhhh--cCCCCC----cEEEEEcCe--ecCCCCcccccC-----CCCCCE
Q 009518 457 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD----QQRLIFAGK--QLEDGRTLADYN-----IQKEST 522 (533)
Q Consensus 457 m~i~v~~~-~g~~~~~~v~~~~tV~~lK~~I~~~--~gip~~----~q~L~~~g~--~L~d~~tL~~~~-----I~~~~~ 522 (533)
+.|.|... .+..+++.++.+.|+.+|...+-.. .+..+. +..|--.|. -|..+.+|.+|. +..+..
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 34444443 5667999999999999999888777 223222 566666666 366777888775 234445
Q ss_pred EEEEE
Q 009518 523 LHLVL 527 (533)
Q Consensus 523 l~l~~ 527 (533)
++|.+
T Consensus 97 ~~L~L 101 (106)
T PF00794_consen 97 PHLVL 101 (106)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 55544
No 307
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=22.07 E-value=1.2e+02 Score=23.42 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=27.9
Q ss_pred CCcHHHHHHHHhhhcCCCCCcEE--EEEcCeecCCCC
Q 009518 476 SDTIDNVKAKIQDKEGIPPDQQR--LIFAGKQLEDGR 510 (533)
Q Consensus 476 ~~tV~~lK~~I~~~~gip~~~q~--L~~~g~~L~d~~ 510 (533)
-.+.++|+.+..+..++|...-+ |.-+|..++|+.
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEe 54 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEE 54 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHH
Confidence 45899999999999999955444 455899998765
No 308
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.57 E-value=53 Score=34.20 Aligned_cols=53 Identities=25% Similarity=0.260 Sum_probs=46.2
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCE
Q 009518 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKEST 522 (533)
Q Consensus 470 ~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~ 522 (533)
.++.+...|=.+|...|++..||+-.+.+.+-+||.|.-.+||++.|+.....
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~ 105 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQE 105 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhhH
Confidence 34566777888999999999999999999999999999999999999876543
No 309
>PF04017 DUF366: Domain of unknown function (DUF366); InterPro: IPR007162 This is an archaeal family of unknown function.; PDB: 2DDZ_E.
Probab=21.50 E-value=2.6e+02 Score=25.53 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=20.5
Q ss_pred CeeEEecCccccCCccccccccCCCceEEE
Q 009518 268 QQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (533)
Q Consensus 268 ~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l 297 (533)
+.++.|+|.++..--.+..+||+..+.+-+
T Consensus 7 ~~~i~YDGsqi~slWAy~~fgi~gdSIV~F 36 (183)
T PF04017_consen 7 DERIDYDGSQISSLWAYRNFGIQGDSIVVF 36 (183)
T ss_dssp SSE--BSSGGGSTTHHHHHH---SSEEEEE
T ss_pred CCCcCcChhhhhHHHHHHhcCCCCCeEEEE
Confidence 356789999999999999999998777644
No 310
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=21.33 E-value=1.1e+02 Score=24.59 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=33.1
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEE-EEcCee
Q 009518 467 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGKQ 505 (533)
Q Consensus 467 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L-~~~g~~ 505 (533)
..+++.|++++|=.++|..|+..+|+++..-+- ...|+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 579999999999999999999999999977654 455554
No 311
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=20.99 E-value=83 Score=24.55 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=18.4
Q ss_pred EEEEeccCccHHHHHHHhccccC
Q 009518 317 ITLEVESSDTIDNVKAKIQDKEG 339 (533)
Q Consensus 317 ~~~~v~~~~ti~~lK~~i~~~~~ 339 (533)
+++.++.+.|+.++|+.+.+...
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~ 24 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAK 24 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGG
T ss_pred eEEEccCcCcHHHHHHHHHHHHH
Confidence 67899999999999998886433
No 312
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=20.93 E-value=75 Score=27.40 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=22.8
Q ss_pred cCeecCCCCcccccCCCCCCEEEEEEe
Q 009518 502 AGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 502 ~g~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
+-|..+|++||.+++++-|+-|++.+.
T Consensus 110 g~Kg~ddnktL~~~kf~iGD~lDVaI~ 136 (151)
T KOG3391|consen 110 GRKGIDDNKTLQQTKFEIGDYLDVAIT 136 (151)
T ss_pred CcccCCccchhhhCCccccceEEEEec
Confidence 344568899999999999999998864
No 313
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=20.45 E-value=4.5e+02 Score=22.95 Aligned_cols=92 Identities=21% Similarity=0.276 Sum_probs=64.1
Q ss_pred EeeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCCCC------------CcccccCCCCCEEEEEEEecCCeeEEE
Q 009518 166 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR------------TLADYNIQKESTLHLVLRLRGGMQIFV 233 (533)
Q Consensus 166 ~i~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~------------tl~~y~I~~~s~i~l~~~~~~~~~i~V 233 (533)
-+..-|+..|+.|-.+.+-+-.+..+.-.+.++|+.|++.. -|..|.+.+|+.=...-...++.++.+
T Consensus 18 lvt~lPt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI 97 (149)
T PF10787_consen 18 LVTSLPTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVI 97 (149)
T ss_pred heecCcHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEE
Confidence 34445677788888877776667777788899999998754 355788888776333333446778888
Q ss_pred EcCCCC-eEEEEeecCc-cHHHHHHH
Q 009518 234 KTLTGK-TITLEVESSD-TIDNVKAK 257 (533)
Q Consensus 234 ~~~~g~-~i~~~v~~~~-tV~~lK~~ 257 (533)
.+-.|+ .+++.+-+.+ -|..+|+.
T Consensus 98 ~tKkGK~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 98 DTKKGKKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred EeccCcceeEEEEEecccHHHHHHHh
Confidence 887775 6778777544 66666654
No 314
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.15 E-value=1.8e+02 Score=22.65 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=29.9
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEE
Q 009518 467 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 499 (533)
Q Consensus 467 ~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L 499 (533)
+.+++.|++..+=.++|..|+..+++.+..-+-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 579999999999999999999999999877654
No 315
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=20.07 E-value=4.9e+02 Score=21.24 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=30.9
Q ss_pred cCCceEEEEeccCccHHHHHHHhccccCCCC-CceeEEe
Q 009518 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 349 (533)
Q Consensus 312 ~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~-~~q~L~~ 349 (533)
.+|-..|+....++||+|+-.++..|+.+++ ..++|+-
T Consensus 10 ~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l 48 (97)
T cd01775 10 SDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSL 48 (97)
T ss_pred cCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEE
Confidence 4566678999999999999999999999877 5555544
Done!