Query 009518
Match_columns 533
No_of_seqs 542 out of 3013
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 07:00:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009518.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009518hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 4.7E-34 1.6E-38 258.2 19.1 154 380-533 2-158 (159)
2 3rt3_B Ubiquitin-like protein 100.0 2.1E-34 7.1E-39 260.5 16.7 153 1-153 3-158 (159)
3 3u30_A Ubiquitin, linear DI-ub 100.0 1.1E-33 3.6E-38 259.0 15.8 152 1-152 21-172 (172)
4 3u30_A Ubiquitin, linear DI-ub 100.0 2.8E-33 9.5E-38 256.2 17.7 155 378-532 18-172 (172)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 9.1E-32 3.1E-36 241.4 17.3 152 1-152 1-152 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 1.8E-31 6.1E-36 239.5 19.1 152 381-532 1-152 (152)
7 3phx_B Ubiquitin-like protein 99.8 6.3E-19 2.1E-23 139.1 10.6 77 455-531 3-79 (79)
8 3plu_A Ubiquitin-like modifier 99.8 1.3E-18 4.5E-23 137.8 10.0 79 449-527 14-92 (93)
9 4fbj_B NEDD8; effector-HOST ta 99.8 1.2E-18 4E-23 140.3 9.3 77 457-533 1-77 (88)
10 2kdi_A Ubiquitin, vacuolar pro 99.8 1.3E-19 4.6E-24 152.8 3.3 104 74-177 7-113 (114)
11 3plu_A Ubiquitin-like modifier 99.8 1.9E-18 6.5E-23 136.9 8.3 76 299-374 16-91 (93)
12 1ndd_A NEDD8, protein (ubiquit 99.7 4E-18 1.4E-22 133.3 9.9 76 457-532 1-76 (76)
13 2uyz_B Small ubiquitin-related 99.7 2.1E-18 7.1E-23 136.1 8.2 77 456-532 3-79 (79)
14 3dbh_I NEDD8; cell cycle, acti 99.7 2.9E-18 9.9E-23 138.3 9.0 79 454-532 10-88 (88)
15 4hcn_B Polyubiquitin, ubiquiti 99.7 5.1E-18 1.8E-22 139.5 9.3 79 454-532 20-98 (98)
16 1wyw_B Ubiquitin-like protein 99.7 4.5E-18 1.5E-22 139.4 8.8 79 454-532 19-97 (97)
17 4eew_A Large proline-rich prot 99.7 6.1E-18 2.1E-22 136.3 9.5 87 441-528 2-88 (88)
18 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 7.9E-18 2.7E-22 135.4 9.8 80 454-533 5-84 (87)
19 3a9j_A Ubiquitin; protein comp 99.7 1.1E-17 3.8E-22 130.8 10.2 76 457-532 1-76 (76)
20 3n3k_B Ubiquitin; hydrolase, p 99.7 7.3E-18 2.5E-22 134.9 9.0 78 455-532 2-79 (85)
21 1sif_A Ubiquitin; hydrophobic 99.7 8.3E-18 2.8E-22 135.3 9.2 78 455-532 8-85 (88)
22 3mtn_B UBA80, ubcep1, ubiquiti 99.7 1.6E-17 5.6E-22 132.9 9.9 78 455-532 2-79 (85)
23 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 1.8E-17 6.2E-22 135.9 10.1 78 456-533 1-78 (96)
24 2l7r_A Ubiquitin-like protein 99.7 9.6E-18 3.3E-22 136.3 8.2 77 454-532 17-93 (93)
25 4eew_A Large proline-rich prot 99.7 9.3E-18 3.2E-22 135.2 7.9 87 61-148 2-88 (88)
26 2hj8_A Interferon-induced 17 k 99.7 1.1E-17 3.9E-22 134.6 8.2 78 455-532 3-80 (88)
27 2kan_A Uncharacterized protein 99.7 1.9E-17 6.6E-22 134.6 9.5 78 454-532 13-91 (94)
28 3phx_B Ubiquitin-like protein 99.7 1.6E-17 5.6E-22 130.9 8.8 75 1-75 5-79 (79)
29 1wy8_A NP95-like ring finger p 99.7 3.7E-17 1.3E-21 132.0 10.6 79 455-533 6-86 (89)
30 3vdz_A Ubiquitin-40S ribosomal 99.7 3.2E-17 1.1E-21 137.7 10.4 78 455-532 34-111 (111)
31 2ojr_A Ubiquitin; lanthide-bin 99.7 2.3E-17 7.8E-22 138.8 9.2 78 455-532 34-111 (111)
32 2kdi_A Ubiquitin, vacuolar pro 99.7 2.3E-18 7.7E-23 145.3 1.9 103 227-329 8-113 (114)
33 3v6c_B Ubiquitin; structural g 99.7 5.4E-17 1.8E-21 131.6 9.8 77 454-530 15-91 (91)
34 4dwf_A HLA-B-associated transc 99.7 6.2E-17 2.1E-21 131.0 9.8 78 454-532 3-80 (90)
35 4fbj_B NEDD8; effector-HOST ta 99.7 4.1E-17 1.4E-21 131.3 8.4 77 1-77 1-77 (88)
36 1uh6_A Ubiquitin-like 5; beta- 99.7 2.7E-17 9.1E-22 133.2 7.1 70 1-70 29-98 (100)
37 1yx5_B Ubiquitin; proteasome, 99.7 4.6E-17 1.6E-21 133.9 7.9 91 77-167 1-91 (98)
38 2lxa_A Ubiquitin-like protein 99.7 3.2E-17 1.1E-21 130.5 6.7 74 1-74 2-79 (87)
39 2lxa_A Ubiquitin-like protein 99.7 2.8E-17 9.6E-22 130.9 5.9 73 77-149 2-78 (87)
40 1yx5_B Ubiquitin; proteasome, 99.7 9.9E-17 3.4E-21 131.9 9.0 91 1-91 1-91 (98)
41 2kk8_A Uncharacterized protein 99.7 1E-16 3.6E-21 127.4 8.7 74 455-528 9-83 (84)
42 2kk8_A Uncharacterized protein 99.7 6.9E-17 2.4E-21 128.4 7.6 73 1-73 11-84 (84)
43 1uh6_A Ubiquitin-like 5; beta- 99.7 6.7E-17 2.3E-21 130.8 7.5 73 455-527 27-99 (100)
44 2fnj_B Transcription elongatio 99.7 7E-17 2.4E-21 134.5 7.8 75 457-532 1-83 (118)
45 2faz_A Ubiquitin-like containi 99.7 1.8E-16 6E-21 124.6 9.8 75 455-529 1-77 (78)
46 3l0w_B Monoubiquitinated proli 99.7 1.6E-16 5.3E-21 143.6 10.7 77 457-533 1-77 (169)
47 3dbh_I NEDD8; cell cycle, acti 99.7 9.6E-17 3.3E-21 129.3 7.6 79 74-152 10-88 (88)
48 2faz_A Ubiquitin-like containi 99.7 1.2E-16 4.1E-21 125.6 7.8 75 75-149 1-77 (78)
49 4ajy_B Transcription elongatio 99.7 1.2E-16 4.1E-21 132.4 7.9 75 1-75 1-83 (118)
50 1we6_A Splicing factor, putati 99.7 1.3E-16 4.4E-21 134.2 8.3 79 454-532 25-107 (111)
51 2fnj_B Transcription elongatio 99.7 1.1E-16 3.6E-21 133.4 7.4 72 1-72 1-80 (118)
52 2hj8_A Interferon-induced 17 k 99.7 1.1E-16 3.8E-21 128.7 7.2 79 75-153 3-81 (88)
53 1wgd_A Homocysteine-responsive 99.7 1.7E-16 5.8E-21 129.1 8.4 78 455-532 6-89 (93)
54 2uyz_B Small ubiquitin-related 99.7 1.1E-16 3.7E-21 126.2 7.0 76 1-76 4-79 (79)
55 3b1l_X E3 ubiquitin-protein li 99.5 6.8E-18 2.3E-22 132.1 0.0 75 457-531 1-75 (76)
56 4ajy_B Transcription elongatio 99.7 2.3E-16 7.8E-21 130.7 8.8 77 457-533 1-85 (118)
57 1sif_A Ubiquitin; hydrophobic 99.7 1.4E-16 4.7E-21 128.1 7.3 77 76-152 9-85 (88)
58 3v6c_B Ubiquitin; structural g 99.6 2.3E-16 7.8E-21 127.8 8.1 77 74-150 15-91 (91)
59 4hcn_B Polyubiquitin, ubiquiti 99.6 1.8E-16 6.3E-21 130.1 7.5 79 74-152 20-98 (98)
60 4dwf_A HLA-B-associated transc 99.6 2.5E-16 8.5E-21 127.4 8.1 77 75-152 4-80 (90)
61 1wh3_A 59 kDa 2'-5'-oligoadeny 99.6 2.5E-16 8.6E-21 126.5 8.1 80 74-153 5-84 (87)
62 2kan_A Uncharacterized protein 99.6 2.4E-16 8.1E-21 128.1 7.8 79 73-152 12-91 (94)
63 1wyw_B Ubiquitin-like protein 99.6 1.8E-16 6.3E-21 129.8 7.1 76 1-76 22-97 (97)
64 2dzi_A Ubiquitin-like protein 99.6 4.7E-16 1.6E-20 123.1 9.1 77 454-530 5-81 (81)
65 3k9o_B Ubiquitin, UBB+1; E2-25 99.6 2.9E-16 9.8E-21 128.7 7.8 81 76-156 1-81 (96)
66 3q3f_A Ribonuclease/ubiquitin 99.6 3.1E-16 1.1E-20 142.9 8.8 79 454-532 103-181 (189)
67 1ndd_A NEDD8, protein (ubiquit 99.6 5.6E-16 1.9E-20 121.0 9.0 75 1-75 1-75 (76)
68 1yqb_A Ubiquilin 3; structural 99.6 4.8E-16 1.6E-20 127.9 8.9 78 454-532 20-97 (100)
69 3n3k_B Ubiquitin; hydrolase, p 99.6 2.6E-16 8.8E-21 125.8 7.0 77 76-152 3-79 (85)
70 4a20_A Ubiquitin-like protein 99.6 4.1E-16 1.4E-20 126.9 8.2 76 74-149 17-96 (98)
71 3a9j_A Ubiquitin; protein comp 99.6 4E-16 1.4E-20 121.8 7.8 76 77-152 1-76 (76)
72 3mtn_B UBA80, ubcep1, ubiquiti 99.6 5.5E-16 1.9E-20 123.9 8.1 77 76-152 3-79 (85)
73 3l0w_B Monoubiquitinated proli 99.6 4.9E-16 1.7E-20 140.3 8.7 126 1-129 1-129 (169)
74 2wyq_A HHR23A, UV excision rep 99.6 1.4E-15 4.9E-20 121.5 10.5 76 454-529 3-81 (85)
75 1wx8_A Riken cDNA 4931431F19; 99.6 3.1E-16 1.1E-20 128.4 6.6 78 454-532 15-92 (96)
76 1wy8_A NP95-like ring finger p 99.6 6.5E-16 2.2E-20 124.6 8.3 79 75-153 6-86 (89)
77 1se9_A Ubiquitin family; ubiqu 99.6 5.3E-16 1.8E-20 130.8 8.0 76 1-76 17-106 (126)
78 3q3f_A Ribonuclease/ubiquitin 99.6 3.7E-16 1.3E-20 142.4 7.3 84 76-159 105-188 (189)
79 2wyq_A HHR23A, UV excision rep 99.6 8.9E-16 3E-20 122.7 8.6 77 74-150 3-82 (85)
80 1v2y_A 3300001G02RIK protein; 99.6 3.4E-16 1.2E-20 128.5 6.2 78 455-532 6-99 (105)
81 1uel_A HHR23B, UV excision rep 99.6 2.1E-15 7.3E-20 123.0 10.8 75 457-531 1-78 (95)
82 1se9_A Ubiquitin family; ubiqu 99.6 1.1E-15 3.9E-20 128.8 9.3 79 454-532 14-106 (126)
83 1wju_A NEDD8 ultimate buster-1 99.6 7.9E-16 2.7E-20 124.6 7.9 66 466-532 29-94 (100)
84 3vdz_A Ubiquitin-40S ribosomal 99.6 8.5E-16 2.9E-20 129.0 8.4 78 75-152 34-111 (111)
85 3m63_B Ubiquitin domain-contai 99.6 1.5E-16 5E-21 131.1 3.5 92 54-148 8-99 (101)
86 2dzi_A Ubiquitin-like protein 99.6 1.4E-15 4.9E-20 120.3 9.0 76 74-149 5-80 (81)
87 3u5e_m 60S ribosomal protein L 99.6 4.2E-17 1.4E-21 140.7 0.0 76 457-532 1-76 (128)
88 1wgh_A Ubiquitin-like 3, HCG-1 99.6 1.6E-15 5.5E-20 126.8 9.2 78 74-151 14-101 (116)
89 1we7_A SF3A1 protein; structur 99.6 1.7E-15 5.9E-20 128.1 9.5 78 455-532 24-111 (115)
90 1j8c_A Ubiquitin-like protein 99.6 2.2E-15 7.4E-20 128.9 10.0 77 455-532 31-107 (125)
91 4a20_A Ubiquitin-like protein 99.6 2.2E-15 7.4E-20 122.7 9.5 75 454-528 17-95 (98)
92 3m62_B UV excision repair prot 99.6 1.3E-15 4.4E-20 126.7 8.3 75 456-530 1-75 (106)
93 3u5c_f 40S ribosomal protein S 99.6 5.9E-17 2E-21 142.8 0.0 76 457-532 1-76 (152)
94 1wgh_A Ubiquitin-like 3, HCG-1 99.6 2.3E-15 7.8E-20 125.9 9.4 79 454-532 14-102 (116)
95 1v5o_A 1700011N24RIK protein; 99.6 1.5E-15 5.1E-20 125.6 7.8 78 455-532 6-88 (102)
96 1wx7_A Ubiquilin 3; ubiquitin- 99.6 2.2E-15 7.4E-20 125.6 8.9 78 454-532 15-92 (106)
97 2bwf_A Ubiquitin-like protein 99.6 4E-15 1.4E-19 116.5 9.7 71 457-528 5-75 (77)
98 2klc_A Ubiquilin-1; ubiquitin- 99.6 4.5E-15 1.5E-19 122.3 10.4 79 453-532 22-100 (101)
99 3m63_B Ubiquitin domain-contai 99.6 6.4E-16 2.2E-20 127.3 5.3 93 129-224 7-99 (101)
100 1uel_A HHR23B, UV excision rep 99.6 2.2E-15 7.6E-20 122.9 8.4 73 77-149 1-76 (95)
101 3b1l_X E3 ubiquitin-protein li 99.4 8.7E-17 3E-21 125.7 0.0 75 1-75 1-75 (76)
102 2l7r_A Ubiquitin-like protein 99.6 1.8E-15 6.3E-20 122.8 7.8 74 1-76 20-93 (93)
103 1ttn_A DC-UBP, dendritic cell- 99.6 3.1E-15 1.1E-19 124.5 9.2 79 454-532 21-99 (106)
104 1v2y_A 3300001G02RIK protein; 99.6 6.3E-16 2.2E-20 126.9 4.9 78 75-152 6-99 (105)
105 1wgd_A Homocysteine-responsive 99.6 1.2E-15 4.1E-20 124.1 6.5 78 75-152 6-89 (93)
106 3m62_B UV excision repair prot 99.6 1.9E-15 6.4E-20 125.8 7.6 74 1-74 2-75 (106)
107 1wju_A NEDD8 ultimate buster-1 99.6 2.9E-15 9.8E-20 121.3 8.1 65 314-379 29-93 (100)
108 2ojr_A Ubiquitin; lanthide-bin 99.6 3.2E-15 1.1E-19 125.6 8.5 79 74-152 33-111 (111)
109 2gow_A HCG-1 protein, ubiquiti 99.6 3.5E-15 1.2E-19 126.6 8.5 78 74-151 15-102 (125)
110 1we6_A Splicing factor, putati 99.6 2.6E-15 9E-20 126.1 7.6 80 73-152 24-107 (111)
111 2gow_A HCG-1 protein, ubiquiti 99.6 4.9E-15 1.7E-19 125.7 9.2 78 455-532 16-103 (125)
112 2bwf_A Ubiquitin-like protein 99.6 4.6E-15 1.6E-19 116.1 8.1 73 76-149 4-76 (77)
113 4dbg_A Ranbp-type and C3HC4-ty 99.6 5.5E-15 1.9E-19 120.6 8.2 72 1-72 25-99 (105)
114 1ttn_A DC-UBP, dendritic cell- 99.6 4.6E-15 1.6E-19 123.5 7.9 77 74-150 21-97 (106)
115 1yqb_A Ubiquilin 3; structural 99.6 3.7E-15 1.3E-19 122.5 6.8 78 74-152 20-97 (100)
116 1wx8_A Riken cDNA 4931431F19; 99.5 4.1E-15 1.4E-19 121.7 5.9 77 75-152 16-92 (96)
117 2klc_A Ubiquilin-1; ubiquitin- 99.5 1.3E-14 4.6E-19 119.5 8.3 78 73-151 22-99 (101)
118 2kdb_A Homocysteine-responsive 99.5 5.9E-15 2E-19 120.4 6.0 73 74-146 21-99 (99)
119 4dbg_A Ranbp-type and C3HC4-ty 99.5 2.6E-14 8.9E-19 116.6 9.7 73 456-528 24-99 (105)
120 3u5e_m 60S ribosomal protein L 99.5 6.5E-16 2.2E-20 133.2 0.0 76 77-152 1-76 (128)
121 1j8c_A Ubiquitin-like protein 99.5 1.8E-14 6.2E-19 123.2 8.5 77 75-152 31-107 (125)
122 2kdb_A Homocysteine-responsive 99.5 1E-14 3.5E-19 119.0 6.3 70 1-70 24-99 (99)
123 3u5c_f 40S ribosomal protein S 99.5 1E-15 3.5E-20 134.9 0.0 77 77-153 1-77 (152)
124 1v5o_A 1700011N24RIK protein; 99.5 1.4E-14 4.9E-19 119.6 6.9 78 75-152 6-88 (102)
125 2xzm_9 RPS31E; ribosome, trans 99.5 1.5E-15 5.1E-20 137.2 0.0 71 457-532 1-71 (189)
126 1wx7_A Ubiquilin 3; ubiquitin- 99.5 2.3E-14 8E-19 119.3 7.1 77 75-152 16-92 (106)
127 1we7_A SF3A1 protein; structur 99.5 3.1E-14 1.1E-18 120.3 7.6 79 74-152 23-111 (115)
128 2xzm_9 RPS31E; ribosome, trans 99.5 2.8E-15 9.5E-20 135.4 0.0 71 1-76 1-71 (189)
129 2kd0_A LRR repeats and ubiquit 99.5 5.7E-14 2E-18 111.8 7.6 71 79-149 14-84 (85)
130 1wgg_A Ubiquitin carboxyl-term 99.5 4.9E-14 1.7E-18 114.8 6.6 74 75-150 6-80 (96)
131 1wia_A Hypothetical ubiquitin- 99.5 1.2E-13 4E-18 112.7 8.9 74 455-531 6-80 (95)
132 2io1_B Small ubiquitin-related 99.5 1.2E-13 4.2E-18 111.5 8.8 79 454-532 5-83 (94)
133 1wia_A Hypothetical ubiquitin- 99.5 1.1E-13 3.8E-18 112.8 8.6 74 75-151 6-80 (95)
134 2kd0_A LRR repeats and ubiquit 99.5 1.3E-13 4.3E-18 109.9 8.5 70 459-528 14-83 (85)
135 1v5t_A 8430435I17RIK protein; 99.5 7.9E-14 2.7E-18 112.3 7.4 73 455-528 6-82 (90)
136 2dzm_A FAS-associated factor 1 99.5 5.9E-14 2E-18 114.3 6.4 73 76-149 8-82 (100)
137 1v5t_A 8430435I17RIK protein; 99.5 4.8E-14 1.6E-18 113.6 5.6 75 75-150 6-84 (90)
138 1x1m_A Ubiquitin-like protein 99.4 1.9E-13 6.5E-18 113.8 8.8 76 455-530 11-101 (107)
139 2dzj_A Synaptic glycoprotein S 99.4 8.7E-14 3E-18 111.2 6.3 70 76-145 10-85 (88)
140 2daf_A FLJ35834 protein; hypot 99.4 3.1E-13 1.1E-17 111.1 9.2 75 455-529 14-89 (118)
141 2dzm_A FAS-associated factor 1 99.4 1E-13 3.5E-18 112.9 6.1 75 455-530 7-83 (100)
142 1wgg_A Ubiquitin carboxyl-term 99.4 1.6E-13 5.4E-18 111.8 7.0 72 455-528 6-78 (96)
143 2daf_A FLJ35834 protein; hypot 99.4 2.1E-13 7.3E-18 112.0 7.2 78 76-153 15-93 (118)
144 1wxv_A BAG-family molecular ch 99.4 3.9E-13 1.3E-17 108.9 8.4 74 455-529 6-85 (92)
145 2dzj_A Synaptic glycoprotein S 99.4 1.1E-13 3.8E-18 110.6 5.1 69 1-69 11-85 (88)
146 2kjr_A CG11242; UBL, ubiquitin 99.4 5.8E-13 2E-17 107.8 9.4 72 455-526 14-93 (95)
147 3ai5_A Yeast enhanced green fl 99.4 3.6E-13 1.2E-17 131.5 9.7 77 454-530 231-307 (307)
148 2io0_B Small ubiquitin-related 99.4 9E-13 3.1E-17 105.6 9.9 78 455-532 4-81 (91)
149 4b6w_A Tubulin-specific chaper 99.4 3.8E-13 1.3E-17 106.8 7.4 65 84-148 12-83 (86)
150 1v86_A DNA segment, CHR 7, way 99.4 1.8E-13 6.2E-18 111.3 5.2 73 75-149 16-88 (95)
151 2kjr_A CG11242; UBL, ubiquitin 99.4 4.7E-13 1.6E-17 108.3 7.5 73 74-146 13-93 (95)
152 1wxv_A BAG-family molecular ch 99.4 4.8E-13 1.7E-17 108.3 7.5 75 75-150 6-86 (92)
153 4b6w_A Tubulin-specific chaper 99.4 6.5E-13 2.2E-17 105.5 7.5 67 310-376 10-83 (86)
154 1x1m_A Ubiquitin-like protein 99.4 5.6E-13 1.9E-17 111.0 6.9 73 1-73 13-100 (107)
155 1v86_A DNA segment, CHR 7, way 99.4 3.4E-13 1.2E-17 109.7 4.9 72 455-528 16-87 (95)
156 2d07_B Ubiquitin-like protein 99.4 2.2E-12 7.5E-17 104.1 9.3 79 454-532 15-93 (93)
157 3ai5_A Yeast enhanced green fl 99.4 8.9E-13 3E-17 128.8 8.0 77 73-149 230-306 (307)
158 2kj6_A Tubulin folding cofacto 99.4 1.8E-12 6.1E-17 105.2 8.3 72 456-527 14-94 (97)
159 2kj6_A Tubulin folding cofacto 99.3 1.4E-12 4.8E-17 105.8 7.2 73 75-147 13-94 (97)
160 1oqy_A HHR23A, UV excision rep 99.3 1.5E-12 5E-17 131.0 7.9 79 454-532 5-87 (368)
161 1wz0_A Ubiquitin-like protein 99.3 3.7E-12 1.3E-16 104.6 7.7 80 454-533 22-101 (104)
162 2eke_C Ubiquitin-like protein 99.3 6.4E-12 2.2E-16 103.1 8.7 78 454-532 29-106 (106)
163 1oqy_A HHR23A, UV excision rep 99.3 2.5E-12 8.6E-17 129.3 7.3 77 75-151 6-86 (368)
164 1v6e_A Cytoskeleton-associated 99.3 6.8E-12 2.3E-16 102.0 8.0 71 457-527 8-86 (95)
165 1wf9_A NPL4 family protein; be 99.3 2.5E-12 8.4E-17 107.0 5.4 72 456-528 7-94 (107)
166 2io1_B Small ubiquitin-related 99.3 7.9E-12 2.7E-16 100.9 8.2 77 304-380 7-83 (94)
167 2k8h_A Small ubiquitin protein 99.3 4.5E-12 1.6E-16 104.8 6.5 80 454-533 24-103 (110)
168 1wf9_A NPL4 family protein; be 99.3 5E-12 1.7E-16 105.1 6.2 73 76-149 7-95 (107)
169 1v6e_A Cytoskeleton-associated 99.2 1E-11 3.5E-16 101.0 7.1 72 76-147 7-86 (95)
170 1t0y_A Tubulin folding cofacto 99.2 1.6E-11 5.4E-16 104.6 7.3 74 305-378 7-88 (122)
171 1wm3_A Ubiquitin-like protein 99.2 4.4E-11 1.5E-15 91.7 8.7 70 457-526 2-71 (72)
172 2io0_B Small ubiquitin-related 99.2 6.4E-11 2.2E-15 94.8 9.2 79 227-305 4-82 (91)
173 1t0y_A Tubulin folding cofacto 99.2 5.6E-11 1.9E-15 101.2 9.0 72 456-527 6-85 (122)
174 2kzr_A Ubiquitin thioesterase 99.2 2.5E-11 8.6E-16 96.7 6.3 71 457-528 1-77 (86)
175 3a4r_A Nfatc2-interacting prot 99.1 1.6E-10 5.4E-15 90.2 9.3 73 454-526 5-78 (79)
176 1wm3_A Ubiquitin-like protein 99.1 1E-10 3.5E-15 89.7 7.9 70 305-374 2-71 (72)
177 2d07_B Ubiquitin-like protein 99.1 1.6E-10 5.3E-15 93.2 8.8 77 227-303 16-92 (93)
178 2kzr_A Ubiquitin thioesterase 99.1 3.8E-11 1.3E-15 95.7 4.9 71 77-148 1-77 (86)
179 3shq_A UBLCP1; phosphatase, hy 99.1 5.9E-11 2E-15 117.7 6.4 76 76-152 5-83 (320)
180 1wz0_A Ubiquitin-like protein 99.1 2.2E-10 7.7E-15 93.9 8.4 78 227-304 23-100 (104)
181 3shq_A UBLCP1; phosphatase, hy 99.1 1.4E-10 4.8E-15 115.0 7.1 72 380-452 5-79 (320)
182 3a4r_A Nfatc2-interacting prot 99.1 4.3E-10 1.5E-14 87.8 8.1 72 303-374 6-78 (79)
183 2k8h_A Small ubiquitin protein 99.1 3.1E-10 1.1E-14 93.8 7.7 79 227-305 25-103 (110)
184 2eke_C Ubiquitin-like protein 99.1 3.9E-10 1.3E-14 92.4 8.2 75 228-303 31-105 (106)
185 1wjn_A Tubulin-folding protein 98.9 3.3E-09 1.1E-13 86.4 9.2 71 457-527 10-91 (97)
186 3kyd_D Small ubiquitin-related 98.9 6.2E-09 2.1E-13 86.1 10.2 77 455-531 39-115 (115)
187 3pge_A SUMO-modified prolifera 98.8 1.2E-08 4.3E-13 92.9 9.1 77 455-532 28-104 (200)
188 3tix_A Ubiquitin-like protein 98.8 9.7E-09 3.3E-13 91.2 7.2 77 455-532 56-132 (207)
189 2ylm_A Ubiquitin carboxyl-term 98.8 2.8E-06 9.6E-11 90.1 27.6 347 165-512 38-503 (530)
190 1wjn_A Tubulin-folding protein 98.8 1.8E-08 6E-13 82.1 7.9 72 77-148 10-92 (97)
191 3kyd_D Small ubiquitin-related 98.7 4.7E-08 1.6E-12 80.8 9.3 73 228-300 40-112 (115)
192 3v7o_A Minor nucleoprotein VP3 98.7 2.4E-09 8.3E-14 96.4 0.3 79 454-533 19-97 (227)
193 3pge_A SUMO-modified prolifera 98.6 3.7E-07 1.3E-11 83.2 11.3 99 227-327 28-130 (200)
194 2ylm_A Ubiquitin carboxyl-term 98.5 5.6E-05 1.9E-09 80.2 29.0 329 89-419 38-479 (530)
195 3tix_A Ubiquitin-like protein 98.5 1.6E-07 5.6E-12 83.4 7.2 77 228-305 57-133 (207)
196 3goe_A DNA repair protein RAD6 98.5 9E-07 3.1E-11 66.2 9.6 69 459-527 12-81 (82)
197 2pjh_A Protein NPL4, nuclear p 98.4 2.2E-07 7.6E-12 72.3 3.6 71 455-526 3-78 (80)
198 3v7o_A Minor nucleoprotein VP3 98.3 7.1E-08 2.4E-12 86.9 0.1 80 225-305 18-97 (227)
199 2jxx_A Nfatc2-interacting prot 98.2 5.8E-06 2E-10 66.3 8.7 73 454-526 23-96 (97)
200 3ivf_A Talin-1; FERM domain, c 98.2 1.4E-05 4.8E-10 81.4 13.8 135 314-452 12-167 (371)
201 3ix6_A TS, tsase, thymidylate 98.2 2.1E-07 7.2E-12 92.1 0.2 79 454-533 19-97 (360)
202 2al3_A TUG long isoform; TUG U 98.2 3.1E-06 1.1E-10 66.0 6.5 77 302-378 7-83 (90)
203 3uf8_A Ubiquitin-like protein 98.1 8.1E-06 2.8E-10 75.9 8.4 78 454-532 19-96 (209)
204 2kc2_A Talin-1, F1; FERM, adhe 98.1 4.6E-06 1.6E-10 70.1 5.8 71 306-376 13-122 (128)
205 2pjh_A Protein NPL4, nuclear p 98.0 2.2E-06 7.5E-11 66.6 3.4 71 75-146 3-78 (80)
206 4efo_A Serine/threonine-protei 98.0 1.6E-05 5.6E-10 62.9 7.8 56 6-61 19-76 (94)
207 2jxx_A Nfatc2-interacting prot 98.0 2.4E-05 8.1E-10 62.7 8.5 71 228-298 25-96 (97)
208 3ivf_A Talin-1; FERM domain, c 98.0 0.00018 6.2E-09 73.1 17.2 134 238-374 12-165 (371)
209 3uf8_A Ubiquitin-like protein 97.9 3.7E-05 1.3E-09 71.4 10.3 94 225-320 18-111 (209)
210 4efo_A Serine/threonine-protei 97.9 2.8E-05 9.5E-10 61.6 7.3 44 464-507 21-64 (94)
211 2l76_A Nfatc2-interacting prot 97.9 5.4E-05 1.9E-09 59.5 8.7 72 455-527 20-91 (95)
212 3goe_A DNA repair protein RAD6 97.9 7.4E-05 2.5E-09 55.9 8.8 70 154-223 11-81 (82)
213 3ix6_A TS, tsase, thymidylate 97.9 1.3E-06 4.4E-11 86.5 -1.0 84 225-309 18-101 (360)
214 2kc2_A Talin-1, F1; FERM, adhe 97.6 6.8E-05 2.3E-09 63.0 5.8 71 382-452 13-122 (128)
215 2l76_A Nfatc2-interacting prot 97.6 0.0002 6.7E-09 56.4 7.8 70 229-299 22-91 (95)
216 4da1_A Protein phosphatase 1K, 97.6 8.9E-06 3.1E-10 83.3 0.0 76 456-532 30-105 (389)
217 2al3_A TUG long isoform; TUG U 97.5 0.00025 8.6E-09 55.2 7.6 74 455-528 8-81 (90)
218 4da1_A Protein phosphatase 1K, 97.3 3.7E-05 1.3E-09 78.7 0.0 79 229-308 31-109 (389)
219 2bps_A YUKD protein; ubiquitin 97.0 0.0016 5.5E-08 50.0 6.8 62 464-525 14-80 (81)
220 2bps_A YUKD protein; ubiquitin 96.9 0.0025 8.7E-08 48.9 6.9 63 311-373 13-80 (81)
221 3qx1_A FAS-associated factor 1 96.8 0.0054 1.8E-07 47.8 8.4 72 455-527 6-82 (84)
222 3qx1_A FAS-associated factor 1 96.2 0.02 6.8E-07 44.5 8.2 70 77-147 8-82 (84)
223 2dzk_A UBX domain-containing p 95.5 0.052 1.8E-06 44.3 8.3 74 455-528 12-90 (109)
224 2dzk_A UBX domain-containing p 95.3 0.098 3.4E-06 42.7 9.2 73 228-300 13-90 (109)
225 1wj4_A KIAA0794 protein; UBX d 95.1 0.055 1.9E-06 45.3 7.2 72 455-527 42-118 (124)
226 1ryj_A Unknown; beta/alpha pro 95.1 0.18 6.3E-06 37.4 9.4 67 456-532 4-70 (70)
227 2daj_A KIAA0977 protein, COBL- 95.0 0.036 1.2E-06 42.0 5.1 65 455-519 9-76 (91)
228 1wj4_A KIAA0794 protein; UBX d 94.9 0.093 3.2E-06 43.9 8.0 72 75-147 42-118 (124)
229 4e71_A Plexin-B2, MM1; transme 94.8 0.093 3.2E-06 42.5 7.5 64 313-376 22-110 (111)
230 2r2o_A Plexin-B1; effector dom 94.1 0.15 5E-06 42.9 7.4 65 314-378 40-130 (138)
231 4e71_A Plexin-B2, MM1; transme 93.7 0.32 1.1E-05 39.4 8.5 63 466-528 23-110 (111)
232 2juo_A GA-binding protein alph 93.5 0.38 1.3E-05 36.4 7.9 59 240-298 4-62 (89)
233 2cr5_A Reproduction 8; UBX dom 93.4 0.27 9.2E-06 40.1 7.7 71 456-527 23-97 (109)
234 1s3s_G P47 protein; AAA ATPase 93.0 0.22 7.6E-06 41.8 6.8 68 455-522 51-122 (127)
235 4a3p_A Ubiquitin carboxyl-term 92.8 0.33 1.1E-05 44.8 8.4 65 468-532 141-212 (217)
236 2l32_A Small archaeal modifier 92.8 0.23 7.9E-06 37.3 5.9 66 457-532 1-66 (74)
237 2juo_A GA-binding protein alph 92.7 0.42 1.4E-05 36.1 7.0 60 470-529 6-65 (89)
238 2cr5_A Reproduction 8; UBX dom 92.5 0.55 1.9E-05 38.1 8.4 69 229-298 24-96 (109)
239 3jyu_A Ubiquitin carboxyl-term 92.4 0.29 9.8E-06 45.7 7.5 64 469-532 154-224 (231)
240 2daj_A KIAA0977 protein, COBL- 91.7 0.29 9.9E-06 37.2 5.2 67 306-375 12-81 (91)
241 4e74_A Plexin-A4; RBD, structu 91.7 0.56 1.9E-05 38.3 7.4 64 314-377 26-115 (117)
242 3h6n_A Plexin-D1; structural g 91.2 1.4 4.7E-05 36.4 9.2 64 465-528 15-104 (127)
243 1tyg_B YJBS; alpha beta barrel 91.1 0.6 2.1E-05 36.2 6.7 68 455-532 19-87 (87)
244 4a3p_A Ubiquitin carboxyl-term 90.5 0.48 1.6E-05 43.7 6.8 63 316-378 141-210 (217)
245 1s3s_G P47 protein; AAA ATPase 90.5 0.64 2.2E-05 38.9 6.9 67 229-295 53-123 (127)
246 3h6n_A Plexin-D1; structural g 90.5 1.1 3.9E-05 36.9 8.1 67 6-72 12-104 (127)
247 1vjk_A Molybdopterin convertin 90.3 1.9 6.4E-05 34.1 9.3 73 455-532 8-98 (98)
248 3jyu_A Ubiquitin carboxyl-term 90.1 0.61 2.1E-05 43.5 7.1 63 316-378 153-222 (231)
249 3rpf_C Molybdopterin convertin 89.6 1.3 4.5E-05 33.0 7.4 58 470-532 15-74 (74)
250 2l32_A Small archaeal modifier 88.9 1.1 3.7E-05 33.6 6.4 66 77-152 1-66 (74)
251 2r2o_A Plexin-B1; effector dom 88.8 1.7 5.9E-05 36.4 8.0 63 467-529 41-129 (138)
252 4e74_A Plexin-A4; RBD, structu 88.6 0.97 3.3E-05 36.9 6.3 64 390-453 26-115 (117)
253 3kuz_A Plexin-C1; structural g 88.0 1.9 6.6E-05 35.4 7.7 61 315-375 39-125 (126)
254 1f0z_A THis protein; ubiquitin 87.7 0.82 2.8E-05 33.3 5.0 57 471-532 10-66 (66)
255 1oey_A P67-PHOX, neutrophil cy 86.6 1.4 4.6E-05 33.7 5.7 47 455-503 4-50 (83)
256 2i1j_A Moesin; FERM, coiled-co 85.9 1.9 6.5E-05 45.8 8.5 71 305-376 5-81 (575)
257 1ef1_A Moesin; membrane, FERM 85.2 2.3 7.8E-05 40.9 8.2 70 305-375 2-77 (294)
258 1h4r_A Merlin; FERM, neurofibr 84.4 2.7 9.2E-05 40.9 8.3 71 304-375 22-97 (314)
259 1oey_A P67-PHOX, neutrophil cy 84.2 1.7 5.8E-05 33.2 5.2 46 306-351 5-50 (83)
260 1ryj_A Unknown; beta/alpha pro 84.0 7.4 0.00025 28.4 8.7 63 304-376 4-66 (70)
261 3kuz_A Plexin-C1; structural g 83.3 5.8 0.0002 32.6 8.3 61 391-451 39-125 (126)
262 3po0_A Small archaeal modifier 83.2 4.7 0.00016 30.9 7.7 61 467-532 18-89 (89)
263 3dwg_C 9.5 kDa culture filtrat 82.8 6.7 0.00023 30.3 8.6 65 466-532 16-93 (93)
264 1fm0_D Molybdopterin convertin 82.6 2.9 9.8E-05 31.5 6.1 59 468-532 18-81 (81)
265 2kl0_A Putative thiamin biosyn 81.4 2.3 7.9E-05 31.6 5.0 56 471-532 10-65 (73)
266 3hm6_X Plexin-B1; structural g 80.1 5.3 0.00018 42.0 8.7 65 314-378 273-363 (644)
267 2q5w_D Molybdopterin convertin 79.7 2.9 9.8E-05 31.2 5.1 59 468-532 17-77 (77)
268 2k5p_A THis protein, thiamine- 79.1 1.9 6.5E-05 32.6 3.9 58 470-532 9-69 (78)
269 1vjk_A Molybdopterin convertin 78.8 7.9 0.00027 30.4 7.7 72 74-150 7-96 (98)
270 2kvr_A Ubiquitin carboxyl-term 78.3 2 6.7E-05 36.0 4.1 35 468-502 57-91 (130)
271 2cu3_A Unknown function protei 77.7 5.4 0.00018 28.6 5.9 56 471-532 9-64 (64)
272 3u52_E Phenol hydroxylase comp 77.1 8.4 0.00029 31.2 7.2 66 467-532 38-113 (119)
273 2kmc_A Fermitin family homolog 76.8 12 0.00043 29.1 7.8 70 2-71 21-98 (102)
274 3qij_A Protein 4.1; cytoskelet 76.0 5.3 0.00018 38.4 7.2 71 304-374 17-93 (296)
275 2kvr_A Ubiquitin carboxyl-term 73.6 3.4 0.00012 34.5 4.4 37 11-47 56-92 (130)
276 2qjl_A URM1, ubiquitin-related 71.9 25 0.00087 27.4 9.0 65 467-532 20-99 (99)
277 3ig3_A Plxna3 protein; plexin 71.2 14 0.00047 38.9 9.0 65 314-378 246-336 (627)
278 1vd2_A Protein kinase C, IOTA 71.2 14 0.00049 28.4 7.1 45 459-503 7-53 (89)
279 1ef1_A Moesin; membrane, FERM 70.9 18 0.00061 34.4 9.5 73 456-529 1-79 (294)
280 1vd2_A Protein kinase C, IOTA 70.3 11 0.00036 29.2 6.1 67 307-374 7-85 (89)
281 1h4r_A Merlin; FERM, neurofibr 69.5 17 0.00059 35.0 9.2 75 454-529 20-99 (314)
282 2g1e_A Hypothetical protein TA 69.3 16 0.00055 27.8 7.2 62 470-532 18-90 (90)
283 1rws_A Hypothetical protein PF 68.5 1.6 5.5E-05 32.8 1.1 54 470-532 24-77 (77)
284 3rpf_C Molybdopterin convertin 66.8 15 0.00052 26.9 6.3 70 77-151 1-73 (74)
285 2kmc_A Fermitin family homolog 65.0 35 0.0012 26.6 8.0 71 382-452 21-99 (102)
286 3po0_A Small archaeal modifier 65.0 21 0.00072 27.1 7.1 58 239-301 18-86 (89)
287 1fm0_D Molybdopterin convertin 64.6 12 0.00041 27.9 5.4 56 240-301 18-78 (81)
288 1wgk_A Riken cDNA 2900073H19 p 64.4 31 0.0011 27.8 8.2 72 456-532 11-108 (114)
289 3ig3_A Plxna3 protein; plexin 63.8 28 0.00094 36.6 9.5 63 467-529 247-335 (627)
290 3hm6_X Plexin-B1; structural g 62.0 21 0.00072 37.6 8.2 63 467-529 274-362 (644)
291 2i1j_A Moesin; FERM, coiled-co 60.5 29 0.001 36.6 9.4 74 455-529 3-82 (575)
292 3qa8_A MGC80376 protein; kinas 60.1 7.1 0.00024 42.3 4.6 51 465-515 320-371 (676)
293 4eut_A Serine/threonine-protei 59.5 30 0.001 34.3 9.0 43 7-49 318-360 (396)
294 1y8x_B Ubiquitin-activating en 58.9 27 0.00092 27.4 6.6 59 468-526 6-82 (98)
295 3qij_A Protein 4.1; cytoskelet 55.2 35 0.0012 32.5 8.3 75 454-528 15-95 (296)
296 1wgk_A Riken cDNA 2900073H19 p 53.9 71 0.0024 25.7 8.6 63 239-304 30-108 (114)
297 3dwg_C 9.5 kDa culture filtrat 53.9 62 0.0021 24.6 8.1 60 242-303 20-92 (93)
298 1wgr_A Growth factor receptor- 53.1 29 0.00098 27.4 5.8 40 381-420 10-49 (100)
299 2l52_A Methanosarcina acetivor 51.5 56 0.0019 25.4 7.5 74 456-532 3-99 (99)
300 1tyg_B YJBS; alpha beta barrel 50.7 43 0.0015 25.6 6.4 58 237-301 26-84 (87)
301 2q5w_D Molybdopterin convertin 50.6 23 0.00078 26.0 4.8 56 239-300 16-73 (77)
302 4eut_A Serine/threonine-protei 50.0 24 0.00084 34.9 6.5 50 466-515 321-372 (396)
303 1wgr_A Growth factor receptor- 49.9 38 0.0013 26.7 6.1 40 75-114 8-47 (100)
304 2kl0_A Putative thiamin biosyn 47.6 21 0.00071 26.3 4.0 57 388-452 5-61 (73)
305 2lgx_A Fermitin family homolog 47.3 11 0.00037 30.0 2.4 69 2-71 28-101 (112)
306 1ip9_A BEM1 protein; ubiquitin 46.5 48 0.0016 25.1 5.8 43 455-500 11-53 (85)
307 2k9x_A Tburm1, uncharacterized 46.1 13 0.00044 30.0 2.9 75 456-532 4-102 (110)
308 2k9x_A Tburm1, uncharacterized 44.0 20 0.0007 28.8 3.8 75 228-304 4-102 (110)
309 3onh_A Ubiquitin-activating en 43.2 53 0.0018 26.9 6.1 50 476-526 19-77 (127)
310 2kmm_A Guanosine-3',5'-BIS(dip 43.1 32 0.0011 24.8 4.5 49 1-53 1-49 (73)
311 2inc_C TOUB protein; DIIRON, 4 41.9 1.1E+02 0.0037 23.0 8.9 60 469-528 15-82 (83)
312 2qjl_A URM1, ubiquitin-related 41.7 99 0.0034 23.9 7.5 34 77-110 2-45 (99)
313 2g1e_A Hypothetical protein TA 41.7 73 0.0025 23.9 6.7 57 244-301 20-87 (90)
314 2cu3_A Unknown function protei 41.4 38 0.0013 23.9 4.5 58 311-376 3-60 (64)
315 2kmm_A Guanosine-3',5'-BIS(dip 41.1 73 0.0025 22.7 6.3 62 457-527 1-62 (73)
316 3qa8_A MGC80376 protein; kinas 40.8 22 0.00076 38.4 4.6 54 311-364 318-372 (676)
317 2inc_C TOUB protein; DIIRON, 4 39.9 98 0.0034 23.3 6.6 59 89-147 15-81 (83)
318 1wgy_A RAP guanine nucleotide 37.9 75 0.0025 25.2 6.0 70 79-148 12-86 (104)
319 1lfd_A Ralgds; RAL, effector i 37.6 1.1E+02 0.0037 23.3 6.5 38 2-39 7-45 (87)
320 1ip9_A BEM1 protein; ubiquitin 37.2 78 0.0027 24.0 5.7 37 75-112 11-47 (85)
321 3au4_A Myosin-X; protein-prote 35.8 54 0.0019 34.3 6.6 57 305-361 217-279 (555)
322 1q1o_A Cell division control p 34.8 44 0.0015 26.2 4.2 39 75-113 4-49 (98)
323 1wgy_A RAP guanine nucleotide 34.6 1.3E+02 0.0044 23.8 6.9 65 389-453 18-87 (104)
324 1f0z_A THis protein; ubiquitin 34.3 53 0.0018 23.3 4.4 57 237-300 6-62 (66)
325 1j0g_A Hypothetical protein 18 34.0 1.2E+02 0.0041 22.6 6.1 65 468-532 25-90 (92)
326 2c7h_A RBBP6, retinoblastoma-b 33.1 1.2E+02 0.0042 23.0 6.3 52 318-374 21-78 (86)
327 1rax_A Protein (RA-domain of R 31.2 92 0.0032 24.9 5.5 71 2-74 32-112 (115)
328 1pqs_A Cell division control p 30.7 34 0.0012 25.5 2.8 27 315-341 2-28 (77)
329 1v8c_A MOAD related protein; r 29.9 79 0.0027 27.3 5.6 61 470-532 17-87 (168)
330 3hvz_A Uncharacterized protein 29.7 60 0.002 24.2 4.1 60 306-374 7-66 (78)
331 3ge3_C Toluene-4-monooxygenase 29.2 1.8E+02 0.0063 21.8 7.3 60 468-527 16-82 (84)
332 1rws_A Hypothetical protein PF 28.7 35 0.0012 25.2 2.7 52 90-150 24-75 (77)
333 3onh_A Ubiquitin-activating en 28.7 95 0.0033 25.5 5.4 51 173-224 20-79 (127)
334 2hj1_A Hypothetical protein; s 28.3 1.4E+02 0.0047 23.2 6.2 57 468-529 27-86 (97)
335 2k5p_A THis protein, thiamine- 28.3 66 0.0022 23.9 4.1 62 84-152 5-69 (78)
336 2v1y_A Phosphatidylinositol-4, 28.2 77 0.0026 25.3 4.7 32 382-413 21-52 (108)
337 3ge3_C Toluene-4-monooxygenase 27.6 1.3E+02 0.0043 22.7 5.4 60 88-147 16-82 (84)
338 2v1y_A Phosphatidylinositol-4, 27.2 63 0.0022 25.8 4.0 68 306-374 21-102 (108)
339 2l52_A Methanosarcina acetivor 27.1 2.1E+02 0.0073 21.9 7.2 52 248-300 27-95 (99)
340 1q1o_A Cell division control p 26.8 56 0.0019 25.5 3.6 40 150-189 3-49 (98)
341 4eku_A Protein-tyrosine kinase 26.0 56 0.0019 32.6 4.4 52 312-363 35-97 (392)
342 1y8x_B Ubiquitin-activating en 26.0 80 0.0027 24.7 4.4 58 240-297 6-81 (98)
343 3h9d_A ATG8, microtubule-assoc 25.3 93 0.0032 25.2 4.8 59 469-527 50-112 (119)
344 2eel_A Cell death activator CI 24.2 83 0.0029 24.2 4.0 62 313-378 17-80 (91)
345 1j0g_A Hypothetical protein 18 22.4 2.1E+02 0.0072 21.3 5.6 61 394-454 27-88 (92)
346 3pvl_A Myosin VIIA isoform 1; 22.2 1.1E+02 0.0039 32.7 6.2 45 305-349 264-309 (655)
347 3r8s_T 50S ribosomal protein L 22.1 1.1E+02 0.0037 23.7 4.3 39 466-504 27-66 (93)
348 4gmv_A RAS-associated and plec 21.7 1.5E+02 0.0053 27.9 6.3 56 459-514 34-96 (281)
349 3kh0_A Ralgds, ralgef, RAL gua 21.6 2.9E+02 0.0098 22.8 6.9 74 2-75 29-110 (140)
350 2lgx_A Fermitin family homolog 21.4 77 0.0026 25.1 3.4 71 227-298 25-100 (112)
351 2j58_A WZA, outer membrane lip 21.4 5.6E+02 0.019 24.8 11.3 102 400-525 118-229 (359)
352 2zjd_A Microtubule-associated 21.3 1.6E+02 0.0054 24.3 5.5 61 74-134 33-102 (130)
353 1ef5_A RGL; RAS-binding domain 21.3 1.2E+02 0.004 23.9 4.3 71 2-73 22-101 (103)
354 3m95_A Autophagy related prote 20.9 1E+02 0.0036 25.2 4.3 58 469-527 55-117 (125)
355 3hk0_A Growth factor receptor- 20.6 1.7E+02 0.0057 27.2 6.2 55 458-512 10-71 (256)
356 3au4_A Myosin-X; protein-prote 20.3 1.8E+02 0.0063 30.2 7.3 48 455-502 215-264 (555)
357 2al6_A Focal adhesion kinase 1 20.3 74 0.0025 31.4 4.0 54 310-363 13-77 (375)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=4.7e-34 Score=258.19 Aligned_cols=154 Identities=34% Similarity=0.504 Sum_probs=147.2
Q ss_pred CeeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEe-e-cCccccCCccccccccccCCeEEEEEE-ecCC
Q 009518 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGG 456 (533)
Q Consensus 380 ~~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~-~-~g~~l~d~~~L~~~~i~~~~~l~l~~~-~~~~ 456 (533)
+|.|+||+++|+++++++++++||.+||++|++++|+|+++|+|. | +|+.|+|+.+|++|++.+|++++|+.+ .+++
T Consensus 2 ~m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~ 81 (159)
T 3rt3_B 2 GWDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEP 81 (159)
T ss_dssp -CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCC
T ss_pred ceEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCc
Confidence 378999999999999999999999999999999999999999999 9 799999999999999999999999998 4899
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG~ 533 (533)
|+|+|++.+|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|+|.+|++||.
T Consensus 82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999993
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=2.1e-34 Score=260.52 Aligned_cols=153 Identities=34% Similarity=0.497 Sum_probs=147.4
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEE-E-ccEEcCCCCCccccccccccccceEEE-ecCCe
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 77 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~-~-~g~~L~~~~tl~~y~i~~~sti~l~~~-~~~~~ 77 (533)
|+|+|++++|++++++|.+++||.++|++|+++.|+|+++|+|+ | +|+.|+|+.+|++|+|.+++++|++++ ++++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 89999999999999999999999999999999999999999999 9 799999999999999999999999999 58999
Q ss_pred EEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccce
Q 009518 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (533)
Q Consensus 78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~~ 153 (533)
+|+||+++|++++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|||+++++||.
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998873
No 3
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=259.02 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=145.7
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecCCeEEE
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (533)
|+|||++++|++++++|.+++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++.+++|+++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~ 100 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 100 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
|++.+|++++++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|||+++++||
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998775
No 4
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=256.25 Aligned_cols=155 Identities=94% Similarity=1.292 Sum_probs=146.8
Q ss_pred cCCeeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEeecCccccCCccccccccccCCeEEEEEEecCCe
Q 009518 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 457 (533)
Q Consensus 378 ~~~~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~~L~~~~i~~~~~l~l~~~~~~~m 457 (533)
...|.|+||+++|+++++++++++||.+||++|++++|+|+++|+|.|+|+.|+|+.+|++|+|..+++++|+.+.++.|
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~ 97 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 97 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence 46699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 458 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 458 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
+++|++.+|+.+.++|++++||++||.+|+..+|+|+++|+|+|+|+.|+|+.||++|||++|++|+|.+|+|||
T Consensus 98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.98 E-value=9.1e-32 Score=241.42 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.6
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecCCeEEE
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (533)
|+|+|++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++.+.+++|+|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
|++++|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++.++++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998775
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.98 E-value=1.8e-31 Score=239.54 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.3
Q ss_pred eeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEeecCccccCCccccccccccCCeEEEEEEecCCeeeE
Q 009518 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 460 (533)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~~L~~~~i~~~~~l~l~~~~~~~m~i~ 460 (533)
|.|+|++++|+.+++++++++||.+||++|++++|+|+++|+|.|+|+.|+|+.+|++|++..++++++..+.++.|+|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 461 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 461 v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
|++.+|+.+.+++++++||++||.+|++.+|+|+++|+|+|+|+.|+|++||++|||.+|++|+|.+|++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.78 E-value=6.3e-19 Score=139.09 Aligned_cols=77 Identities=35% Similarity=0.569 Sum_probs=75.5
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 531 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~G 531 (533)
++|+|+|++.+|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|+|++|++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999998
No 8
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.77 E-value=1.3e-18 Score=137.79 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=71.3
Q ss_pred EEEEecCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009518 449 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 449 l~~~~~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
|++..++.|+|+|++..|+++.++|.|++||.+||++|++++|+||++|+|+|+|++|+|+.||++|+|++|++|+|..
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 4556678999999999999999999999999999999999999999999999999999999999999999999999863
No 9
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.76 E-value=1.2e-18 Score=140.32 Aligned_cols=77 Identities=56% Similarity=0.917 Sum_probs=73.1
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG~ 533 (533)
|+|+|++.+|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|+|.+|++||.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999993
No 10
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.3e-19 Score=152.84 Aligned_cols=104 Identities=73% Similarity=0.983 Sum_probs=98.8
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccce
Q 009518 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (533)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~~ 153 (533)
.+..+|+|++++|+++.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+.++++|+
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeee---eccCceEEeeecCCchHHH
Q 009518 154 QIFVK---TLTGKTITLEVESSDTIDN 177 (533)
Q Consensus 154 ~i~v~---~~~g~~~~i~v~~~dtV~~ 177 (533)
+++++ ...|++++++|.+++||..
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeeccccccccCceEEEEeccccccCC
Confidence 99998 5679999999999999864
No 11
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.75 E-value=1.9e-18 Score=136.86 Aligned_cols=76 Identities=22% Similarity=0.368 Sum_probs=70.0
Q ss_pred EeecCCceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEE
Q 009518 299 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 299 ~~~~~~~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
...++-|+|||++..|+++++.++|++||++||++|+++.|+||++|+|+|+|++|+|..||++|+|+++++|+|.
T Consensus 16 ~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 16 PRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp ----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred CCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 3444558999999999999999999999999999999999999999999999999999999999999999999985
No 12
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.75 E-value=4e-18 Score=133.32 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.9
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
|+|+|++.+|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||.+|++|++.+|++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 13
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.75 E-value=2.1e-18 Score=136.09 Aligned_cols=77 Identities=18% Similarity=0.425 Sum_probs=74.8
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.|+|+|++.+|+.+.++|.+++||++||++|++..|+|+++|+|+|+|++|+|++||++|+|++|++|++.+|++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998
No 14
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.75 E-value=2.9e-18 Score=138.26 Aligned_cols=79 Identities=57% Similarity=0.963 Sum_probs=77.1
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..+|+|+|++.+|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.||++|||.+|++|+|.+|++||
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999998
No 15
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.1e-18 Score=139.47 Aligned_cols=79 Identities=94% Similarity=1.267 Sum_probs=76.1
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
...|+|+|++.+|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.+|++||
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999999998
No 16
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.74 E-value=4.5e-18 Score=139.43 Aligned_cols=79 Identities=18% Similarity=0.407 Sum_probs=77.0
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
+..|+|+|++.+|+.+.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|.+|++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999998
No 17
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.74 E-value=6.1e-18 Score=136.33 Aligned_cols=87 Identities=29% Similarity=0.523 Sum_probs=72.3
Q ss_pred cccCCeEEEEEEecCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCC
Q 009518 441 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 520 (533)
Q Consensus 441 i~~~~~l~l~~~~~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~ 520 (533)
..+++.+++..+.+.+|+|+|++.+|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++||| +|
T Consensus 2 ~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g 80 (88)
T 4eew_A 2 MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GG 80 (88)
T ss_dssp -------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TT
T ss_pred CCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CC
Confidence 45677888888888899999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CEEEEEEe
Q 009518 521 STLHLVLR 528 (533)
Q Consensus 521 ~~l~l~~~ 528 (533)
++|||++|
T Consensus 81 ~~i~lv~R 88 (88)
T 4eew_A 81 KVIHLVER 88 (88)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEC
Confidence 99999986
No 18
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=7.9e-18 Score=135.37 Aligned_cols=80 Identities=34% Similarity=0.518 Sum_probs=77.5
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG~ 533 (533)
+.+|+|+|++.+|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|++||++|+|.+|++|++.+|++||.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999993
No 19
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.73 E-value=1.1e-17 Score=130.79 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=74.7
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
|+|+|++.+|+.+.+++++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||.+|++|++.+|++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 20
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=7.3e-18 Score=134.93 Aligned_cols=78 Identities=78% Similarity=1.132 Sum_probs=73.2
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.+|+|+|++.+|+.+.++|++++||++||++|++.+++|+++|+|+|+|+.|+|+.||++|+|+++++|++.+|++||
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999999998
No 21
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=8.3e-18 Score=135.33 Aligned_cols=78 Identities=86% Similarity=1.263 Sum_probs=70.4
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..|+|++++.+|+.+.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.||++|||.+|++|+|.+|++||
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999999
No 22
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.6e-17 Score=132.87 Aligned_cols=78 Identities=90% Similarity=1.218 Sum_probs=75.8
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.+|+|+|++.+|+.+.+++++++||++||.+|++.+++|+++|+|+|+|+.|+|+.+|++|+|.++++|+|.+|++||
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999998
No 23
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.72 E-value=1.8e-17 Score=135.88 Aligned_cols=78 Identities=94% Similarity=1.262 Sum_probs=74.2
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG~ 533 (533)
.|+|+|++.+|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.||++|||.+|++|+|.+|++||+
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999999999994
No 24
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=9.6e-18 Score=136.33 Aligned_cols=77 Identities=38% Similarity=0.647 Sum_probs=72.9
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
+..|+|+|++ |+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|||.+|++|+|++|++||
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4679999998 8999999999999999999999999999999999999999999999999999999999999999998
No 25
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.72 E-value=9.3e-18 Score=135.23 Aligned_cols=87 Identities=29% Similarity=0.523 Sum_probs=71.9
Q ss_pred cccccccceEEEecCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCcccccccccc
Q 009518 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 140 (533)
Q Consensus 61 i~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~ 140 (533)
...++++++..+.+..|+|+||+++|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+| +|
T Consensus 2 ~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g 80 (88)
T 4eew_A 2 MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GG 80 (88)
T ss_dssp -------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TT
T ss_pred CCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CC
Confidence 34678889988888899999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred ccceeeee
Q 009518 141 STLHLVLR 148 (533)
Q Consensus 141 s~i~l~~~ 148 (533)
++|||+.|
T Consensus 81 ~~i~lv~R 88 (88)
T 4eew_A 81 KVIHLVER 88 (88)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEC
Confidence 99999864
No 26
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=134.55 Aligned_cols=78 Identities=36% Similarity=0.590 Sum_probs=72.2
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.+|+|+|++.+|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|++||++|||++|++|+|.++++||
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999999998
No 27
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.72 E-value=1.9e-17 Score=134.60 Aligned_cols=78 Identities=27% Similarity=0.426 Sum_probs=75.5
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCC-CcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~-~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
...|+|+|++..| .+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+ .||++|||.+|++|+|++|++||
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 5679999999888 899999999999999999999999999999999999999999 99999999999999999999998
No 28
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.71 E-value=1.6e-17 Score=130.89 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=72.8
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecC
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (533)
|+|||++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++|
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999998764
No 29
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.7e-17 Score=132.01 Aligned_cols=79 Identities=37% Similarity=0.617 Sum_probs=76.0
Q ss_pred CCeeeEEEeCCC-CEEEE-EecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 455 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g-~~~~~-~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.+|+|+|++.+| +.+.+ +|++++||++||.+|++.+|+|+++|+|+|+|+.|+|++||++|||.+|++|+|.+|++||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 579999999999 79999 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 009518 533 F 533 (533)
Q Consensus 533 ~ 533 (533)
.
T Consensus 86 ~ 86 (89)
T 1wy8_A 86 P 86 (89)
T ss_dssp S
T ss_pred C
Confidence 3
No 30
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.71 E-value=3.2e-17 Score=137.74 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=75.5
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..|+|+|++.+|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|.+|++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999998
No 31
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.71 E-value=2.3e-17 Score=138.76 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=75.4
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..|+|+|++.+|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|++||++|||.+|++|+|.+|++||
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 579999999999999999999999999999999999999999999999999999999999999999999999999998
No 32
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.3e-18 Score=145.33 Aligned_cols=103 Identities=74% Similarity=0.991 Sum_probs=98.4
Q ss_pred CCeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCCce
Q 009518 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 306 (533)
Q Consensus 227 ~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~~ 306 (533)
+..+|+|++.+|+++.++|++++||.+||++|++..|+|++.|+|+|+|+.|+|++||++|+|++|++|++..+++++++
T Consensus 8 ~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~ 87 (114)
T 2kdi_A 8 GEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSM 87 (114)
T ss_dssp CCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCC
T ss_pred CcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCce
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEE---ccCCceEEEEeccCccHHH
Q 009518 307 IFVK---TLTGKTITLEVESSDTIDN 329 (533)
Q Consensus 307 i~v~---~~~g~~~~~~v~~~~ti~~ 329 (533)
+|++ +..|+++++.+++++||.+
T Consensus 88 ~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 88 GGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeccccccccCceEEEEeccccccCC
Confidence 9998 6789999999999999864
No 33
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.70 E-value=5.4e-17 Score=131.55 Aligned_cols=77 Identities=91% Similarity=1.263 Sum_probs=74.7
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 530 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~ 530 (533)
...|+|+|++.+|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.+|+|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999986
No 34
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.69 E-value=6.2e-17 Score=130.96 Aligned_cols=78 Identities=32% Similarity=0.549 Sum_probs=74.5
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
+.+|+|+|++.+|+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++||| +|++|+|++|++++
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999999 89999999999876
No 35
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.69 E-value=4.1e-17 Score=131.26 Aligned_cols=77 Identities=56% Similarity=0.924 Sum_probs=73.0
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecCCe
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~ 77 (533)
|+|+|++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++++++++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988765
No 36
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.69 E-value=2.7e-17 Score=133.18 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=68.6
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceE
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (533)
|+|||++++|++++++|.++|||.+||++|++++|+|+++|+|+|+|++|+|++||++|+|.+++++||+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999986
No 37
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.68 E-value=4.6e-17 Score=133.88 Aligned_cols=91 Identities=81% Similarity=1.094 Sum_probs=74.7
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccceeee
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 156 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~~~i~ 156 (533)
|+|+||+.+|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++..++++|.+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCceEEe
Q 009518 157 VKTLTGKTITL 167 (533)
Q Consensus 157 v~~~~g~~~~i 167 (533)
.++.+|+.-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 99888765443
No 38
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.2e-17 Score=130.50 Aligned_cols=74 Identities=22% Similarity=0.425 Sum_probs=70.2
Q ss_pred CeEEEEcCCCcEEEEEec--CcccHHHHHHHH-HhhhCCCCccceEEEccEEcCCCCCcccccc-ccccccceEEEec
Q 009518 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR 74 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~--~~dtv~~ik~ki-~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i-~~~sti~l~~~~~ 74 (533)
|+|||++++|++++++|+ ++|||.++|++| +++.|+|+++|+|+|+|++|+|+.+|++|+| .+++++++..++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 899999999999999866 999999999999 9999999999999999999999999999999 7999999988653
No 39
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=2.8e-17 Score=130.85 Aligned_cols=73 Identities=22% Similarity=0.429 Sum_probs=69.8
Q ss_pred eEEEEEecCCcEEEEEEc--CCCcHHHHHHHH-ccccCCCCCCeEEEecCcccccCCccccccc-cccccceeeeee
Q 009518 77 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 149 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~--~~~tV~~lK~~i-~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i-~~~s~i~l~~~~ 149 (533)
|+|+||+++|++++++|+ +++||.++|++| +++.|+|+++|+|+|+|+.|+|+.+|++|+| ++|++|+|..++
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 899999999999988866 999999999999 9999999999999999999999999999999 799999999876
No 40
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.68 E-value=9.9e-17 Score=131.87 Aligned_cols=91 Identities=81% Similarity=1.094 Sum_probs=75.0
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecCCeEEE
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (533)
|+|+|++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+.+++.+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcEEEE
Q 009518 81 VKTLTGKTITL 91 (533)
Q Consensus 81 vk~~~g~~~~l 91 (533)
.++.+|+.-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 99988765443
No 41
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=1e-16 Score=127.37 Aligned_cols=74 Identities=32% Similarity=0.472 Sum_probs=71.7
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCee-cCCCCcccccCCCCCCEEEEEEe
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~-L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
.-|+|+|++..|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+. |+|++||++|||++|++|+|.+|
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 359999999999999999999999999999999999999999999999999 99999999999999999999886
No 42
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=6.9e-17 Score=128.41 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEE-cCCCCCccccccccccccceEEEe
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~-L~~~~tl~~y~i~~~sti~l~~~~ 73 (533)
|+|||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+. |+|+++|++|+|.+++++++++++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999 999999999999999999998753
No 43
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=6.7e-17 Score=130.85 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=70.4
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
++|+|+|++..|+.+.++|.+++||.+||++|++.+|+|+++|+|+|+|++|+|+.||++|||.+|++|+|..
T Consensus 27 ~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 4599999999999999999999999999999999999999999999999999999999999999999999874
No 44
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.67 E-value=7e-17 Score=134.50 Aligned_cols=75 Identities=28% Similarity=0.431 Sum_probs=68.7
Q ss_pred eeeEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCC-------CCCEEEEEEe
Q 009518 457 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~-~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~-------~~~~l~l~~~ 528 (533)
|++|++...++ ++.++|.+++||++||.+|++++|||+++|||+|+|+.|+|++||++|||+ .++||+|++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 56777766665 588999999999999999999999999999999999999999999999999 7999999999
Q ss_pred cCCC
Q 009518 529 LRGG 532 (533)
Q Consensus 529 l~GG 532 (533)
.||
T Consensus 81 -~~g 83 (118)
T 2fnj_B 81 -ADD 83 (118)
T ss_dssp -SSS
T ss_pred -CCC
Confidence 665
No 45
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.8e-16 Score=124.62 Aligned_cols=75 Identities=36% Similarity=0.657 Sum_probs=71.4
Q ss_pred CCeeeEEEeCCCCEE-EEE-ecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009518 455 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~-~~~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l 529 (533)
+.|+|+|++.+|+.+ .++ |++++||++||++|++.+|+|+++|+|+|+|+.|+|++||++|||.+|++|++.+|+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 369999999999885 999 999999999999999999999999999999999999999999999999999999986
No 46
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.67 E-value=1.6e-16 Score=143.57 Aligned_cols=77 Identities=96% Similarity=1.293 Sum_probs=74.2
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG~ 533 (533)
|+|+|++.+|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.||++|||++|++|+|.+|++||.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999994
No 47
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.67 E-value=9.6e-17 Score=129.28 Aligned_cols=79 Identities=57% Similarity=0.963 Sum_probs=75.8
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
...|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999998775
No 48
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.2e-16 Score=125.56 Aligned_cols=75 Identities=36% Similarity=0.657 Sum_probs=71.3
Q ss_pred CCeEEEEEecCCcEE-EEE-EcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeee
Q 009518 75 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~-~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~ 149 (533)
+.|+|+||+.+|+.+ .++ |++++||++||++|+++.|+|+++|+|+|+|+.|+|+++|++|+|.+|++|++++++
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 579999999999985 999 999999999999999999999999999999999999999999999999999999875
No 49
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.66 E-value=1.2e-16 Score=132.37 Aligned_cols=75 Identities=29% Similarity=0.437 Sum_probs=71.6
Q ss_pred CeEEEEcCCCc-EEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCcccccccc-------ccccceEEE
Q 009518 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (533)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~-------~sti~l~~~ 72 (533)
|++|++...++ +++++|+++|||.+||++|++++|+|+++|+|+|+|++|+|++||++|+|.+ ++++||+++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 89999999997 8889999999999999999999999999999999999999999999999999 999999988
Q ss_pred ecC
Q 009518 73 LRG 75 (533)
Q Consensus 73 ~~~ 75 (533)
..+
T Consensus 81 ~~~ 83 (118)
T 4ajy_B 81 ADD 83 (118)
T ss_dssp CSS
T ss_pred cCC
Confidence 643
No 50
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.66 E-value=1.3e-16 Score=134.20 Aligned_cols=79 Identities=33% Similarity=0.468 Sum_probs=76.4
Q ss_pred cCCeeeEEEeC---CCCEEEEEecC-CCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009518 454 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 454 ~~~m~i~v~~~---~g~~~~~~v~~-~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l 529 (533)
+.+|+|+|++. .|+.+.++|++ ++||++||.+|++.+|+|+++|+|+|+|+.|+|+.||++|||.+|++|+|.+|+
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 57899999998 88999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 009518 530 RGG 532 (533)
Q Consensus 530 ~GG 532 (533)
+||
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 999
No 51
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.66 E-value=1.1e-16 Score=133.40 Aligned_cols=72 Identities=29% Similarity=0.451 Sum_probs=69.5
Q ss_pred CeEEEEcCCCc-EEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccc-------cccccceEEE
Q 009518 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (533)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~-------~~sti~l~~~ 72 (533)
|++|++...|+ +++++|.++|||.+||++|++++|||+++|+|+|+|+.|+|++||++|+|. +++++||+++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 89999999996 699999999999999999999999999999999999999999999999999 7999999988
No 52
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=128.73 Aligned_cols=79 Identities=35% Similarity=0.595 Sum_probs=72.0
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccce
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~~ 153 (533)
+.|+|+||+++|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+++|++|+|.+|++|+|+.++++|-
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 4699999999999999999999999999999999999999999999999999999999999999999999999887653
No 53
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.7e-16 Score=129.11 Aligned_cols=78 Identities=29% Similarity=0.500 Sum_probs=73.9
Q ss_pred CCeeeEEEeCCCC--EEEEEecCCCcHHHHHHHHhhhc--CCCCCcEEEEEcCeecCCCCccccc--CCCCCCEEEEEEe
Q 009518 455 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~--~~~~~v~~~~tV~~lK~~I~~~~--gip~~~q~L~~~g~~L~d~~tL~~~--~I~~~~~l~l~~~ 528 (533)
.+|+|+|++.+|+ .+.++|++++||++||++|++.+ ++|+++|+|+|+|+.|+|+.+|++| +|.++++|||++|
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 5699999999888 67777889999999999999999 9999999999999999999999999 9999999999999
Q ss_pred cCCC
Q 009518 529 LRGG 532 (533)
Q Consensus 529 l~GG 532 (533)
++||
T Consensus 86 ~~gg 89 (93)
T 1wgd_A 86 VKSG 89 (93)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9998
No 54
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.66 E-value=1.1e-16 Score=126.16 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=72.8
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecCC
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (533)
|+|+|++++|++++++|.+++||.++|++|+++.|+|+++|+|+|+|+.|+|++||++|+|.+++++|++++.+|+
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999887653
No 55
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.47 E-value=6.8e-18 Score=132.08 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=73.5
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 531 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~G 531 (533)
|+|+|++.+|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.||++|||.+|++|++.+|+||
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999998
No 56
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.65 E-value=2.3e-16 Score=130.68 Aligned_cols=77 Identities=30% Similarity=0.452 Sum_probs=70.5
Q ss_pred eeeEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCC-------CCEEEEEEe
Q 009518 457 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~-~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~-------~~~l~l~~~ 528 (533)
|.+|++...++ ++.++|.+++||.+||.+|+.++|+|+++|||+|+|+.|+|++||++|||++ +++|+|++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 67788766666 6788999999999999999999999999999999999999999999999999 999999999
Q ss_pred cCCCC
Q 009518 529 LRGGF 533 (533)
Q Consensus 529 l~GG~ 533 (533)
..|+|
T Consensus 81 ~~~~f 85 (118)
T 4ajy_B 81 ADDTF 85 (118)
T ss_dssp CSSCC
T ss_pred cCCCc
Confidence 85543
No 57
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=1.4e-16 Score=128.13 Aligned_cols=77 Identities=87% Similarity=1.283 Sum_probs=70.3
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
+|+|+|++++|+++.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++||
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999998776
No 58
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.65 E-value=2.3e-16 Score=127.80 Aligned_cols=77 Identities=91% Similarity=1.263 Sum_probs=73.7
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeec
Q 009518 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~ 150 (533)
...|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++++
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999998753
No 59
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.8e-16 Score=130.13 Aligned_cols=79 Identities=94% Similarity=1.267 Sum_probs=74.9
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
...|+|+||+++|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++++||
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999998775
No 60
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.65 E-value=2.5e-16 Score=127.39 Aligned_cols=77 Identities=32% Similarity=0.560 Sum_probs=72.9
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
..|+|+||+++|+++.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+| +|++|||+++++++
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999 89999999987554
No 61
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=2.5e-16 Score=126.51 Aligned_cols=80 Identities=34% Similarity=0.524 Sum_probs=76.5
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccce
Q 009518 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (533)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~~ 153 (533)
+..|+|+||+.+|+++.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++++|.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999988763
No 62
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.64 E-value=2.4e-16 Score=128.14 Aligned_cols=79 Identities=27% Similarity=0.416 Sum_probs=75.2
Q ss_pred ecCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccC-Cccccccccccccceeeeeecc
Q 009518 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 151 (533)
Q Consensus 73 ~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~-~~l~~y~i~~~s~i~l~~~~~~ 151 (533)
....|+|+||+++| ++.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+ .+|++|+|.++++|+|++++++
T Consensus 12 ~~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~g 90 (94)
T 2kan_A 12 AVRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSIN 90 (94)
T ss_dssp SSCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCS
T ss_pred CCCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCC
Confidence 45789999999988 899999999999999999999999999999999999999999 9999999999999999999877
Q ss_pred c
Q 009518 152 G 152 (533)
Q Consensus 152 ~ 152 (533)
|
T Consensus 91 g 91 (94)
T 2kan_A 91 R 91 (94)
T ss_dssp S
T ss_pred C
Confidence 6
No 63
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.64 E-value=1.8e-16 Score=129.77 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.4
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecCC
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (533)
|+|||++++|++++++|.+++||..||++|+++.|+|+++|+|+|+|++|+|++||++|+|.+++++|++++++|+
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999887653
No 64
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=4.7e-16 Score=123.10 Aligned_cols=77 Identities=39% Similarity=0.674 Sum_probs=73.8
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 530 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~ 530 (533)
+.+|+|+|+..+|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||.+|++|++.+|++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999874
No 65
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.64 E-value=2.9e-16 Score=128.66 Aligned_cols=81 Identities=90% Similarity=1.223 Sum_probs=73.9
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccceee
Q 009518 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 155 (533)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~~~i 155 (533)
+|+|+||+++|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++++|...
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999988764
Q ss_pred e
Q 009518 156 F 156 (533)
Q Consensus 156 ~ 156 (533)
.
T Consensus 81 ~ 81 (96)
T 3k9o_B 81 R 81 (96)
T ss_dssp -
T ss_pred c
Confidence 3
No 66
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.64 E-value=3.1e-16 Score=142.89 Aligned_cols=79 Identities=92% Similarity=1.253 Sum_probs=76.9
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.-.|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|++|++||
T Consensus 103 ~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 103 HYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred ccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999999
No 67
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.64 E-value=5.6e-16 Score=121.01 Aligned_cols=75 Identities=56% Similarity=0.935 Sum_probs=72.3
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecC
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (533)
|+|+|++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++.+|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~G 75 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRG 75 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC-
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999988765
No 68
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=4.8e-16 Score=127.85 Aligned_cols=78 Identities=33% Similarity=0.432 Sum_probs=74.8
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
+..|+|+|++..|+ +.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.||++|||.+|++|+|.+|++||
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 46799999999886 7999999999999999999999999999999999999999999999999999999999999997
No 69
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=2.6e-16 Score=125.84 Aligned_cols=77 Identities=79% Similarity=1.145 Sum_probs=72.6
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
.|+|+||+++|+++.++|++++||.+||++|+++.++|+++|+|+|+|+.|+|+.+|++|+|.++++|++++++++|
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999998765
No 70
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.64 E-value=4.1e-16 Score=126.93 Aligned_cols=76 Identities=20% Similarity=0.413 Sum_probs=69.9
Q ss_pred cCCeEEEEEecCCcEEEE--EEcCCCcHHHHHHHH-ccccCCCCCCeEEEecCcccccCCccccccc-cccccceeeeee
Q 009518 74 RGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 149 (533)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l--~v~~~~tV~~lK~~i-~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i-~~~s~i~l~~~~ 149 (533)
...|+|+||+++|+.+++ +|++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .+|++|+|+++.
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 467999999999998777 556999999999999 8889999999999999999999999999999 999999999864
No 71
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.63 E-value=4e-16 Score=121.81 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=73.4
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
|+|+|++.+|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++.++++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999988765
No 72
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=5.5e-16 Score=123.92 Aligned_cols=77 Identities=91% Similarity=1.232 Sum_probs=74.5
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
.|+|+|++.+|+++.++|++++||.+||++|+++.++|+++|+|+|+|+.|+|+.+|++|+|.++++|+++++++++
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999988765
No 73
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.63 E-value=4.9e-16 Score=140.30 Aligned_cols=126 Identities=65% Similarity=0.861 Sum_probs=98.1
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecCCeEEE
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (533)
|||+|++++|++++++|.+++||.++|++|+++.|+|+++|+|+|+|+.|+|+++|++|+|.+++++|++++++++..-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred EEecC-Cc--EEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccC
Q 009518 81 VKTLT-GK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 129 (533)
Q Consensus 81 vk~~~-g~--~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~ 129 (533)
|+... |. .-.+.+.++.++..-.+.+.-... +..+..|+-+-|.+-
T Consensus 81 vkfs~~Gd~g~~~i~l~~~~~~~~~~~~~~i~~~---~~~~~~fsl~yl~~~ 129 (169)
T 3l0w_B 81 IKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMD---QPVDLTFGAKYLLDI 129 (169)
T ss_dssp EEEEEECSSCEEEEEECCBCCSSCGGGCBEEEES---SCEEEEEEHHHHHHH
T ss_pred ccccccCcccceeEEEecCCCCCCcccceEEecC---CcceEEEhHHHHHHH
Confidence 77542 32 456677776665432222211111 234666776666553
No 74
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.63 E-value=1.4e-15 Score=121.48 Aligned_cols=76 Identities=29% Similarity=0.501 Sum_probs=71.6
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhh---cCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~---~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l 529 (533)
+.+|+|+|++.+|+.+.++|++++||++||.+|++. +|+|+++|+|+|+|+.|+|+++|++|||.+|++|+|..+.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 467999999999999999999999999999999998 8999999999999999999999999999999999998864
No 75
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=3.1e-16 Score=128.43 Aligned_cols=78 Identities=27% Similarity=0.335 Sum_probs=75.2
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
...|+|+|+.. |+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|++||++|||.+|++|+|.+|++||
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 35699999998 9999999999999999999999999999999999999999999999999999999999999999998
No 76
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=6.5e-16 Score=124.64 Aligned_cols=79 Identities=37% Similarity=0.622 Sum_probs=74.9
Q ss_pred CCeEEEEEecCC-cEEEE-EEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 75 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 75 ~~~~i~vk~~~g-~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
..|+|+||+++| +++.+ +|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|++++++|
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 569999999999 79999 5999999999999999999999999999999999999999999999999999999998776
Q ss_pred e
Q 009518 153 M 153 (533)
Q Consensus 153 ~ 153 (533)
.
T Consensus 86 ~ 86 (89)
T 1wy8_A 86 P 86 (89)
T ss_dssp S
T ss_pred C
Confidence 3
No 77
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.62 E-value=5.3e-16 Score=130.75 Aligned_cols=76 Identities=26% Similarity=0.458 Sum_probs=70.3
Q ss_pred CeEEEEcCCCcEE-EEEecCcccHHHHHHHH-----HhhhCCCC--ccceEEEccEEcCCCCCccccccccc------cc
Q 009518 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (533)
Q Consensus 1 ~~i~~~~~~g~~~-~~~v~~~dtv~~ik~ki-----~~~~~i~~--~~q~l~~~g~~L~~~~tl~~y~i~~~------st 66 (533)
|+|+|++++|+.+ +++++++|||.+||++| ++++|+|+ ++|+|+|+|++|+|++||++|+|..+ ++
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 6899999999988 89999999999999999 67889997 79999999999999999999999988 68
Q ss_pred cceEEEecCC
Q 009518 67 LHLVLRLRGG 76 (533)
Q Consensus 67 i~l~~~~~~~ 76 (533)
+||+++++++
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 9999987754
No 78
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.62 E-value=3.7e-16 Score=142.37 Aligned_cols=84 Identities=90% Similarity=1.224 Sum_probs=81.3
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccceee
Q 009518 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 155 (533)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~~~i 155 (533)
.|+|+||+++|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|++++++|..+
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~ 184 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQT 184 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeee
Q 009518 156 FVKT 159 (533)
Q Consensus 156 ~v~~ 159 (533)
+|+.
T Consensus 185 fvk~ 188 (189)
T 3q3f_A 185 FTKI 188 (189)
T ss_dssp CCCC
T ss_pred eEec
Confidence 8863
No 79
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.62 E-value=8.9e-16 Score=122.71 Aligned_cols=77 Identities=29% Similarity=0.494 Sum_probs=71.6
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccc---cCCCCCCeEEEecCcccccCCccccccccccccceeeeeec
Q 009518 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~ 150 (533)
++.|+|+||+.+|+.+.++|++++||++||++|++. .|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++.+..
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 468999999999999999999999999999999997 89999999999999999999999999999999999988653
No 80
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=3.4e-16 Score=128.46 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=73.5
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCC---------------CcEEEEEcCeecC-CCCcccccCCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQ 518 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~---------------~~q~L~~~g~~L~-d~~tL~~~~I~ 518 (533)
..|+|+|++.+|+.+.++|.+++||++||++|++.+++|+ ++|+|+|+|+.|. |++||++|||+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence 4699999999999999999999999999999999999987 5689999999996 67999999999
Q ss_pred CCCEEEEEEecCCC
Q 009518 519 KESTLHLVLRLRGG 532 (533)
Q Consensus 519 ~~~~l~l~~~l~GG 532 (533)
+|++|+++.|++|.
T Consensus 86 ~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 86 NRDEVSFIKKLGQK 99 (105)
T ss_dssp SSEEEEEEECSCSC
T ss_pred CCCEEEEEehhccC
Confidence 99999999999985
No 81
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=2.1e-15 Score=122.99 Aligned_cols=75 Identities=29% Similarity=0.573 Sum_probs=71.6
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhh---cCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 531 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~---~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~G 531 (533)
|+|+|++.+|+.+.++|++++||++||.+|++. +|+|+++|+|+|+|+.|+|+.||++|||.+|++|+|.++...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 899999999999999999999999999999999 899999999999999999999999999999999999987643
No 82
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.62 E-value=1.1e-15 Score=128.75 Aligned_cols=79 Identities=25% Similarity=0.440 Sum_probs=73.6
Q ss_pred cCCeeeEEEeCCCCEE-EEEecCCCcHHHHHHHH-----hhhcCCCC--CcEEEEEcCeecCCCCcccccCCCCC-----
Q 009518 454 RGGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE----- 520 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~-~~~v~~~~tV~~lK~~I-----~~~~gip~--~~q~L~~~g~~L~d~~tL~~~~I~~~----- 520 (533)
...|+|++++.+|+.+ .+++++++||++||++| ++.+|+|+ ++|+|+|+|+.|+|+.||++|+|+.|
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 4679999999999888 79999999999999999 56778997 89999999999999999999999998
Q ss_pred -CEEEEEEecCCC
Q 009518 521 -STLHLVLRLRGG 532 (533)
Q Consensus 521 -~~l~l~~~l~GG 532 (533)
++++|++|++||
T Consensus 94 v~tmhlVlrl~g~ 106 (126)
T 1se9_A 94 VTTMHVIIQAPVT 106 (126)
T ss_dssp CEEEEEEECCCSS
T ss_pred cEEEEEEeccCCc
Confidence 789999999997
No 83
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.62 E-value=7.9e-16 Score=124.56 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=63.8
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 466 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 466 g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
++.+.++|++++||++||++|++++|+|+++|+|+|+|+.|+|++||++|||++|++| ++++++|.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 6789999999999999999999999999999999999999999999999999999999 89999985
No 84
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.62 E-value=8.5e-16 Score=128.99 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=74.7
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
..|+|+||+++|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999998775
No 85
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.5e-16 Score=131.14 Aligned_cols=92 Identities=32% Similarity=0.529 Sum_probs=68.2
Q ss_pred CCccccccccccccceEEEecCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccc
Q 009518 54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133 (533)
Q Consensus 54 ~tl~~y~i~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~ 133 (533)
.-+++|.|. +|.++.++....|.|+||+ +|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|+
T Consensus 8 ~~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~ 84 (101)
T 3m63_B 8 HPMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVE 84 (101)
T ss_dssp -----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTT
T ss_pred CCccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHH
Confidence 456788774 5666766666677889987 8999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceeeee
Q 009518 134 DYNIQKESTLHLVLR 148 (533)
Q Consensus 134 ~y~i~~~s~i~l~~~ 148 (533)
+|+|.+|++|+|+.+
T Consensus 85 ~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 85 SYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTCCTTEEEEECCC
T ss_pred HCCCCCCCEEEEEeC
Confidence 999999999999865
No 86
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.4e-15 Score=120.26 Aligned_cols=76 Identities=39% Similarity=0.693 Sum_probs=72.7
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeee
Q 009518 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~ 149 (533)
...|+|+|++.+|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++++++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999875
No 87
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.61 E-value=4.2e-17 Score=140.71 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.||++|||.+|++|+|.+|++||
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999
No 88
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=1.6e-15 Score=126.81 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=70.6
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHcc------ccCC--CCCCeEEEecCcccccCCcccccccccc--ccc
Q 009518 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STL 143 (533)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~------~~gi--p~~~q~L~~~G~~L~d~~~l~~y~i~~~--s~i 143 (533)
...|+|+||+++|++++++|++++||++||++|++ ++|+ |+++|+|+|+|++|+|+.+|++|+|..+ +++
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 46799999999999999999999999999999998 6675 6999999999999999999999999766 688
Q ss_pred eeeeeecc
Q 009518 144 HLVLRLRG 151 (533)
Q Consensus 144 ~l~~~~~~ 151 (533)
||++++..
T Consensus 94 hLvlr~~~ 101 (116)
T 1wgh_A 94 HLVARETL 101 (116)
T ss_dssp EEEECSSC
T ss_pred EEEccCCC
Confidence 99887643
No 89
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.61 E-value=1.7e-15 Score=128.07 Aligned_cols=78 Identities=29% Similarity=0.584 Sum_probs=72.0
Q ss_pred CCeeeEEEeC----------CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEE
Q 009518 455 GGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 524 (533)
Q Consensus 455 ~~m~i~v~~~----------~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~ 524 (533)
.+++|.|+.. +|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.||++|||.+|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4556666643 578999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCC
Q 009518 525 LVLRLRGG 532 (533)
Q Consensus 525 l~~~l~GG 532 (533)
|++|++||
T Consensus 104 lv~rl~GG 111 (115)
T 1we7_A 104 LALKERSG 111 (115)
T ss_dssp EEECCCSC
T ss_pred EEEEcCCC
Confidence 99999999
No 90
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.61 E-value=2.2e-15 Score=128.92 Aligned_cols=77 Identities=30% Similarity=0.367 Sum_probs=71.2
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..|+|+|++. |+.+.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|++||++|||.+|++|+|..+++||
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 5799999998 9999999999999999999999999999999999999999999999999999999999999999998
No 91
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.60 E-value=2.2e-15 Score=122.66 Aligned_cols=75 Identities=20% Similarity=0.428 Sum_probs=69.6
Q ss_pred cCCeeeEEEeCCCCEEEE--EecCCCcHHHHHHHH-hhhcCCCCCcEEEEEcCeecCCCCcccccCC-CCCCEEEEEEe
Q 009518 454 RGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 528 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~--~v~~~~tV~~lK~~I-~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I-~~~~~l~l~~~ 528 (533)
..+|+|+|++..|+.+.+ +|++++||++||++| ++..|+|+++|+|+|+|+.|+|+.||++||| ++|++|+|.++
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 578999999999998777 566999999999999 8899999999999999999999999999999 99999999875
No 92
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.60 E-value=1.3e-15 Score=126.74 Aligned_cols=75 Identities=21% Similarity=0.416 Sum_probs=70.3
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 530 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~ 530 (533)
.|+|+|++.+|+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.++..
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 389999999999999999999999999999999999999999999999999999999999999999999998743
No 93
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.60 E-value=5.9e-17 Score=142.83 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
|+|+|++.+|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.||++|||.+|++|+|++|++||
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 94
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=2.3e-15 Score=125.90 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=71.8
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhh------hcCC--CCCcEEEEEcCeecCCCCcccccCCCCC--CEE
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STL 523 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~------~~gi--p~~~q~L~~~g~~L~d~~tL~~~~I~~~--~~l 523 (533)
...|+|+|++.+|++++++|.+++||++||++|++ .+++ |+++|||+|.|+.|+|+.||++|+|..+ ++|
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 45799999999999999999999999999999999 5675 6999999999999999999999999866 678
Q ss_pred EEEEecCCC
Q 009518 524 HLVLRLRGG 532 (533)
Q Consensus 524 ~l~~~l~GG 532 (533)
||++|+.+.
T Consensus 94 hLvlr~~~~ 102 (116)
T 1wgh_A 94 HLVARETLP 102 (116)
T ss_dssp EEEECSSCS
T ss_pred EEEccCCCC
Confidence 999988754
No 95
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.60 E-value=1.5e-15 Score=125.57 Aligned_cols=78 Identities=21% Similarity=0.397 Sum_probs=73.3
Q ss_pred CCeeeEEEeCCC----CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCC-CcccccCCCCCCEEEEEEec
Q 009518 455 GGMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 455 ~~m~i~v~~~~g----~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~-~tL~~~~I~~~~~l~l~~~l 529 (533)
..|+|+|++..+ +.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+ +||++|||.+|++|+|..+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 459999998654 7999999999999999999999999999999999999999987 69999999999999999999
Q ss_pred CCC
Q 009518 530 RGG 532 (533)
Q Consensus 530 ~GG 532 (533)
+||
T Consensus 86 ~gg 88 (102)
T 1v5o_A 86 NVG 88 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 998
No 96
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=2.2e-15 Score=125.60 Aligned_cols=78 Identities=33% Similarity=0.432 Sum_probs=74.3
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
...|+|+|+...|+ +.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+++|++|||.+|++|+|.+|++||
T Consensus 15 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 15 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred CceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 35699999998886 7999999999999999999999999999999999999999999999999999999999999998
No 97
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.59 E-value=4e-15 Score=116.47 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=68.7
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
|+|+|++ .|+.+.+++++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|++..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 8899999 8999999999999999999999999999999999999999999999999999999999999875
No 98
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.59 E-value=4.5e-15 Score=122.31 Aligned_cols=79 Identities=30% Similarity=0.378 Sum_probs=74.4
Q ss_pred ecCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 453 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 453 ~~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
....|+|+|+.. |+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.||++|||.+|++|+|..++++.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~~ 100 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNR 100 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSSC
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 457899999998 8899999999999999999999999999999999999999999999999999999999999998763
No 99
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=6.4e-16 Score=127.28 Aligned_cols=93 Identities=31% Similarity=0.518 Sum_probs=67.4
Q ss_pred CCccccccccccccceeeeeeccceeeeeeeccCceEEeeecCCchHHHHHHHhhhhcCCCCCCeEEEeCCeecCCCCCc
Q 009518 129 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (533)
Q Consensus 129 ~~~l~~y~i~~~s~i~l~~~~~~~~~i~v~~~~g~~~~i~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl 208 (533)
..++++|.| ++|.++..+....+.|+|+. +|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|
T Consensus 7 ~~~~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (101)
T 3m63_B 7 HHPMSDYDI--PTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV 83 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred cCCccccCC--CcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence 467899998 57777777666667788886 899999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCEEEEEEE
Q 009518 209 ADYNIQKESTLHLVLR 224 (533)
Q Consensus 209 ~~y~I~~~s~i~l~~~ 224 (533)
++|+|++|++|+|+.+
T Consensus 84 ~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 84 ESYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTTCCTTEEEEECCC
T ss_pred HHCCCCCCCEEEEEeC
Confidence 9999999999998764
No 100
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=2.2e-15 Score=122.89 Aligned_cols=73 Identities=30% Similarity=0.597 Sum_probs=70.3
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccc---cCCCCCCeEEEecCcccccCCccccccccccccceeeeee
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~ 149 (533)
|+|+||+.+|+.+.++|++++||++||++|++. .|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+++++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 789999999999999999999999999999998 8999999999999999999999999999999999998864
No 101
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.38 E-value=8.7e-17 Score=125.71 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecC
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (533)
|+|||++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998765
No 102
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=122.77 Aligned_cols=74 Identities=36% Similarity=0.620 Sum_probs=71.2
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecCC
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (533)
|+|||++ |++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+++|++|+|.++++++++++++|+
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999 8999999999999999999999999999999999999999999999999999999999999987763
No 103
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=3.1e-15 Score=124.53 Aligned_cols=79 Identities=27% Similarity=0.449 Sum_probs=74.8
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
...|+|+|++..|+.+.++|.+++||++||.+|+..+|+|+++|+|+|+|+.|+|++||++|||.+|++|+|.++...+
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999987653
No 104
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=6.3e-16 Score=126.87 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=71.8
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCC---------------CCeEEEecCcccc-cCCcccccccc
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQ 138 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~---------------~~q~L~~~G~~L~-d~~~l~~y~i~ 138 (533)
..|+|+|++++|+.++++|++++||++||++|++++++|+ ++|+|+|+|+.|. |+.+|++|+|.
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence 3599999999999999999999999999999999999988 4679999999996 67999999999
Q ss_pred ccccceeeeeeccc
Q 009518 139 KESTLHLVLRLRGG 152 (533)
Q Consensus 139 ~~s~i~l~~~~~~~ 152 (533)
+|++||++.++++.
T Consensus 86 ~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 86 NRDEVSFIKKLGQK 99 (105)
T ss_dssp SSEEEEEEECSCSC
T ss_pred CCCEEEEEehhccC
Confidence 99999999987654
No 105
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=1.2e-15 Score=124.08 Aligned_cols=78 Identities=29% Similarity=0.500 Sum_probs=72.8
Q ss_pred CCeEEEEEecCCc--EEEEEEcCCCcHHHHHHHHcccc--CCCCCCeEEEecCcccccCCccccc--cccccccceeeee
Q 009518 75 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 148 (533)
Q Consensus 75 ~~~~i~vk~~~g~--~~~l~v~~~~tV~~lK~~i~~~~--gip~~~q~L~~~G~~L~d~~~l~~y--~i~~~s~i~l~~~ 148 (533)
..|+|+||+.+|+ ++.++|++++||.+||++|++.. ++|+++|+|+|+|+.|+|+.+|++| +|.++++|||+++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 4699999999988 67788889999999999999998 9999999999999999999999999 9999999999998
Q ss_pred eccc
Q 009518 149 LRGG 152 (533)
Q Consensus 149 ~~~~ 152 (533)
++++
T Consensus 86 ~~gg 89 (93)
T 1wgd_A 86 VKSG 89 (93)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8765
No 106
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.9e-15 Score=125.76 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=70.3
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEec
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (533)
|+|+|++++|++++++|.+++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++.+
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998643
No 107
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.58 E-value=2.9e-15 Score=121.26 Aligned_cols=65 Identities=23% Similarity=0.359 Sum_probs=60.6
Q ss_pred CceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEEEEecC
Q 009518 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 379 (533)
Q Consensus 314 g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~ 379 (533)
|++++++|++++||++||++|++++|+||++|+|+|+|++|+|+.||++|+|+++++| ++.++++
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence 7899999999999999999999999999999999999999999999999999999999 5445443
No 108
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.58 E-value=3.2e-15 Score=125.58 Aligned_cols=79 Identities=92% Similarity=1.246 Sum_probs=74.9
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
...|+|+||+.+|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+++++||
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999998765
No 109
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.58 E-value=3.5e-15 Score=126.62 Aligned_cols=78 Identities=23% Similarity=0.346 Sum_probs=70.9
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHcc------ccCCC--CCCeEEEecCcccccCCccccccccccc--cc
Q 009518 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TL 143 (533)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~------~~gip--~~~q~L~~~G~~L~d~~~l~~y~i~~~s--~i 143 (533)
...|.|+||+++|++++++|++++||++||++|++ ++|+| +++|+|+|+|+.|+|+.||++|+|..++ ++
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tl 94 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 94 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 45699999999999999999999999999999998 78884 8999999999999999999999999665 78
Q ss_pred eeeeeecc
Q 009518 144 HLVLRLRG 151 (533)
Q Consensus 144 ~l~~~~~~ 151 (533)
||++++.+
T Consensus 95 hlv~r~~~ 102 (125)
T 2gow_A 95 HLVARETL 102 (125)
T ss_dssp EEEECSCC
T ss_pred EEEecCCC
Confidence 88888754
No 110
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.57 E-value=2.6e-15 Score=126.15 Aligned_cols=80 Identities=33% Similarity=0.454 Sum_probs=75.9
Q ss_pred ecCCeEEEEEec---CCcEEEEEEcC-CCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeee
Q 009518 73 LRGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (533)
Q Consensus 73 ~~~~~~i~vk~~---~g~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~ 148 (533)
.++.|+|+|+++ +|+.+.++|++ ++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r 103 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLR 103 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECS
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEE
Confidence 356799999998 89999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 009518 149 LRGG 152 (533)
Q Consensus 149 ~~~~ 152 (533)
+++|
T Consensus 104 ~~GG 107 (111)
T 1we6_A 104 ERSG 107 (111)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 8776
No 111
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.57 E-value=4.9e-15 Score=125.70 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=72.4
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhh------hcCCC--CCcEEEEEcCeecCCCCcccccCCCCCC--EEE
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLH 524 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~------~~gip--~~~q~L~~~g~~L~d~~tL~~~~I~~~~--~l~ 524 (533)
..|+|++++.+|++++++|.+++||++||++|++ ++|+| +++|+|+|+|+.|+|+.||++|+|..++ +++
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 4588999999999999999999999999999999 77884 9999999999999999999999999776 789
Q ss_pred EEEecCCC
Q 009518 525 LVLRLRGG 532 (533)
Q Consensus 525 l~~~l~GG 532 (533)
|++|++||
T Consensus 96 lv~r~~~~ 103 (125)
T 2gow_A 96 LVARETLP 103 (125)
T ss_dssp EEECSCCS
T ss_pred EEecCCCC
Confidence 99999875
No 112
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.57 E-value=4.6e-15 Score=116.09 Aligned_cols=73 Identities=33% Similarity=0.553 Sum_probs=69.7
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeee
Q 009518 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~ 149 (533)
.|+|+|++ +|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|++..++
T Consensus 4 ~m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 4 SLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 48999999 99999999999999999999999999999999999999999999999999999999999998654
No 113
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.56 E-value=5.5e-15 Score=120.59 Aligned_cols=72 Identities=24% Similarity=0.253 Sum_probs=68.3
Q ss_pred CeEEEEcCCC--cEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCcccccc-ccccccceEEE
Q 009518 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (533)
Q Consensus 1 ~~i~~~~~~g--~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i-~~~sti~l~~~ 72 (533)
|+|||++..| .+++++|.|++||..+|++|++++|+|+++|+|+|+|+.++|++||++|+| ++++++||++-
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 6899999986 799999999999999999999999999999999999999999999999999 69999999874
No 114
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=4.6e-15 Score=123.52 Aligned_cols=77 Identities=27% Similarity=0.479 Sum_probs=73.3
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeec
Q 009518 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~ 150 (533)
...|+|+||+++|+.+.++|++++||.+||++|+.+.|+|+++|+|+|+|+.|+|+++|++|+|.+|++|||+.+..
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999998654
No 115
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=3.7e-15 Score=122.52 Aligned_cols=78 Identities=33% Similarity=0.432 Sum_probs=73.3
Q ss_pred cCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
...|+|+|++.+|+ +.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++++++
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 45799999999886 7999999999999999999999999999999999999999999999999999999999987654
No 116
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.54 E-value=4.1e-15 Score=121.69 Aligned_cols=77 Identities=27% Similarity=0.340 Sum_probs=73.3
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
..|+|+|++. |+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|.++++|||+++++++
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 4699999998 9999999999999999999999999999999999999999999999999999999999999987665
No 117
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=119.46 Aligned_cols=78 Identities=31% Similarity=0.387 Sum_probs=72.6
Q ss_pred ecCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeecc
Q 009518 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (533)
Q Consensus 73 ~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~ 151 (533)
....|+|+|++. |+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+.+++.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 346799999998 899999999999999999999999999999999999999999999999999999999999987643
No 118
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.53 E-value=5.9e-15 Score=120.43 Aligned_cols=73 Identities=23% Similarity=0.359 Sum_probs=65.8
Q ss_pred cCCeEEEEEecCCc--EEEEEEcCCCcHHHHHHHHccc-cCCC-CCCeEEEecCcccccCCccccc--cccccccceee
Q 009518 74 RGGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 146 (533)
Q Consensus 74 ~~~~~i~vk~~~g~--~~~l~v~~~~tV~~lK~~i~~~-~gip-~~~q~L~~~G~~L~d~~~l~~y--~i~~~s~i~l~ 146 (533)
.+.|+|+||+++|+ .++++|++++||.+||++|+++ .|+| +++|+|+|+|+.|+|+.+|++| +|.++++|||+
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 45799999999998 6899999999999999999985 5666 5999999999999999999999 99999999984
No 119
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.53 E-value=2.6e-14 Score=116.58 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=67.8
Q ss_pred CeeeEEEeCCC--CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCC-CCCCEEEEEEe
Q 009518 456 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 528 (533)
Q Consensus 456 ~m~i~v~~~~g--~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I-~~~~~l~l~~~ 528 (533)
.|+++|++..+ ..++++|.|++||++||++|++++|+||++|||+|+|+.++|+.||++||| ++|++++|.+.
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 58889998764 689999999999999999999999999999999999999999999999999 59999999874
No 120
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.53 E-value=6.5e-16 Score=133.24 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
|+|+|++++|+++.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++++||
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999998776
No 121
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.53 E-value=1.8e-14 Score=123.18 Aligned_cols=77 Identities=30% Similarity=0.367 Sum_probs=70.8
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
..|+|+||+. |+.+.++|++++||.+||++|+.+.|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+.++.++
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 4699999998 9999999999999999999999999999999999999999999999999999999999999987665
No 122
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.52 E-value=1e-14 Score=119.03 Aligned_cols=70 Identities=24% Similarity=0.394 Sum_probs=65.1
Q ss_pred CeEEEEcCCCc--EEEEEecCcccHHHHHHHHHhh-hCCC-CccceEEEccEEcCCCCCcccc--ccccccccceE
Q 009518 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (533)
Q Consensus 1 ~~i~~~~~~g~--~~~~~v~~~dtv~~ik~ki~~~-~~i~-~~~q~l~~~g~~L~~~~tl~~y--~i~~~sti~l~ 70 (533)
|+|+|++++|+ +++++|.+++||.++|++|+++ .|+| +++|+|+|+|+.|+|+++|++| +|.+++++||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 7899999999999999999986 5666 5999999999999999999999 99999999984
No 123
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.52 E-value=1e-15 Score=134.92 Aligned_cols=77 Identities=96% Similarity=1.301 Sum_probs=0.0
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccce
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~~ 153 (533)
|+|+|++++|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+++++||-
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GGg 77 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (152)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999987763
No 124
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=1.4e-14 Score=119.61 Aligned_cols=78 Identities=21% Similarity=0.397 Sum_probs=71.9
Q ss_pred CCeEEEEEecCC----cEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccC-Cccccccccccccceeeeee
Q 009518 75 GGMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 75 ~~~~i~vk~~~g----~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~-~~l~~y~i~~~s~i~l~~~~ 149 (533)
..|+|+|++.++ +.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+ ++|++|+|.+|++|+|..+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 359999998754 7999999999999999999999999999999999999999887 79999999999999999887
Q ss_pred ccc
Q 009518 150 RGG 152 (533)
Q Consensus 150 ~~~ 152 (533)
+++
T Consensus 86 ~gg 88 (102)
T 1v5o_A 86 NVG 88 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 665
No 125
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.50 E-value=1.5e-15 Score=137.19 Aligned_cols=71 Identities=30% Similarity=0.415 Sum_probs=0.0
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
|+|+|++++|++++++|++++||.+||.+|++.+|||+++|+|+|+|++|+|+.||+ ++|||+|++|++||
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 899999999999999999999999999999999999999999999999999999999 89999999999999
No 126
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.50 E-value=2.3e-14 Score=119.31 Aligned_cols=77 Identities=34% Similarity=0.442 Sum_probs=72.4
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
..|+|+||+.+|+ +.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+++|++|+|.++++|||+.+++++
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 4599999999886 7999999999999999999999999999999999999999999999999999999999987654
No 127
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.50 E-value=3.1e-14 Score=120.34 Aligned_cols=79 Identities=29% Similarity=0.588 Sum_probs=72.7
Q ss_pred cCCeEEEEEec----------CCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccc
Q 009518 74 RGGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 143 (533)
Q Consensus 74 ~~~~~i~vk~~----------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i 143 (533)
++.++|.|+.+ +|+.+.++|++++||.+||++|+...|+|+++|+|+|+|+.|+|+.+|++|+|.++++|
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 45677777764 47899999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeccc
Q 009518 144 HLVLRLRGG 152 (533)
Q Consensus 144 ~l~~~~~~~ 152 (533)
||+++++||
T Consensus 103 ~lv~rl~GG 111 (115)
T 1we7_A 103 HLALKERSG 111 (115)
T ss_dssp EEEECCCSC
T ss_pred EEEEEcCCC
Confidence 999998876
No 128
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.48 E-value=2.8e-15 Score=135.40 Aligned_cols=71 Identities=30% Similarity=0.415 Sum_probs=0.0
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCCCCccccccccccccceEEEecCC
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (533)
|||||++++|++++++|+++|||.+||++|++++|||+++|+|+|+|++|+|+++|+ ++|+|||+++++++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 899999999999999999999999999999999999999999999999999999998 89999999988765
No 129
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.48 E-value=5.7e-14 Score=111.83 Aligned_cols=71 Identities=28% Similarity=0.438 Sum_probs=66.4
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeee
Q 009518 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~ 149 (533)
.++++++|+.+.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+|++|+|+.++
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s~ 84 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMASQ 84 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECCC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEeC
Confidence 45667899999999999999999999999999999999999999999999999999999999999997653
No 130
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=4.9e-14 Score=114.81 Aligned_cols=74 Identities=18% Similarity=0.323 Sum_probs=68.9
Q ss_pred CCeEEEEEecCCcEE-EEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeec
Q 009518 75 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~-~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~ 150 (533)
..|+|+|| +.|+.+ .++|++++||.+||++|+++.|+|+++|+|+|.|+.|+|+ +|++|+|.++++|+|+....
T Consensus 6 ~~m~i~Vk-~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 6 SGYSVTVK-WGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp CEEEEEEE-ETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred cEEEEEEE-ECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 35899999 578999 6999999999999999999999999999999999999999 99999999999999987654
No 131
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=1.2e-13 Score=112.68 Aligned_cols=74 Identities=27% Similarity=0.410 Sum_probs=70.2
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCC-CcccccCCCCCCEEEEEEecCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 531 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~-~tL~~~~I~~~~~l~l~~~l~G 531 (533)
..|+|+|++..|+.+.++|++++||++||.+|++.+ +++|+|+|+|+.|+|+ .+|++|||.+|++|+|+++..+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 579999999999999999999999999999999998 8999999999999999 9999999999999999998655
No 132
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=1.2e-13 Score=111.54 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=76.1
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
+..|+|+|++.+|+.+.++|.+++++..|+.+++++.|+|+++++|+|+|++|.++.|+++|++++|++|++.++++||
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999999
No 133
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=1.1e-13 Score=112.83 Aligned_cols=74 Identities=27% Similarity=0.410 Sum_probs=69.6
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccC-Cccccccccccccceeeeeecc
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 151 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~-~~l~~y~i~~~s~i~l~~~~~~ 151 (533)
..|+|+||+++|+.+.++|++++||.+||++|++.. +++|+|+|+|+.|+|+ .+|++|+|.+|++|||+.+.+.
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 569999999999999999999999999999999987 8999999999999999 9999999999999999987643
No 134
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.46 E-value=1.3e-13 Score=109.85 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=65.1
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009518 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
.+++...|+.+.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|...
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 4556678899999999999999999999999999999999999999999999999999999999998753
No 135
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.46 E-value=7.9e-14 Score=112.33 Aligned_cols=73 Identities=22% Similarity=0.448 Sum_probs=68.7
Q ss_pred CCeeeEEEeCCCCEEEE-EecCCCcHHHHHHHHhhhcCCCCCcEEEE---EcCeecCCCCcccccCCCCCCEEEEEEe
Q 009518 455 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~-~v~~~~tV~~lK~~I~~~~gip~~~q~L~---~~g~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
..|+|+|+. .|+.+.+ ++++++||++||++|++.+|+|+++|+|+ |+|++|+|+.+|++|||.+|++|+|...
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 569999996 7889999 99999999999999999999999999999 9999999999999999999999998753
No 136
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=5.9e-14 Score=114.29 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=68.1
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEe--cCcccccCCccccccccccccceeeeee
Q 009518 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~--~G~~L~d~~~l~~y~i~~~s~i~l~~~~ 149 (533)
.|.++++.++|++++++|++++||++||++|++++||||++|+|+| .|+ |+|+.+|++|+|++|+++||++..
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 5888888999999999999999999999999999999999999996 556 999999999999999999998765
No 137
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.46 E-value=4.8e-14 Score=113.65 Aligned_cols=75 Identities=21% Similarity=0.428 Sum_probs=70.1
Q ss_pred CCeEEEEEecCCcEEEE-EEcCCCcHHHHHHHHccccCCCCCCeEEE---ecCcccccCCccccccccccccceeeeeec
Q 009518 75 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~ 150 (533)
..|+|+||. .|+.+.+ +|++++||.+||++|+++.|+|+++|+|+ |+|+.|+|+.+|++|+|.+|++|+|+..+.
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~~ 84 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTRE 84 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCCS
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecCc
Confidence 468999995 8899999 99999999999999999999999999999 999999999999999999999999987643
No 138
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=1.9e-13 Score=113.84 Aligned_cols=76 Identities=28% Similarity=0.383 Sum_probs=70.0
Q ss_pred CCeeeEEEeCCC---CEEEEEec--------C-CCcHHHHHHHHhhhc--CCCCCc-EEEEEcCeecCCCCcccccCCCC
Q 009518 455 GGMQIFVKTLTG---KTITLEVE--------S-SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK 519 (533)
Q Consensus 455 ~~m~i~v~~~~g---~~~~~~v~--------~-~~tV~~lK~~I~~~~--gip~~~-q~L~~~g~~L~d~~tL~~~~I~~ 519 (533)
..|+|+|+...+ +.+.++++ + ++||.+||++|++.+ |+|+++ |+|+|+|+.|+|++||++|||++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 469999999888 78999955 4 499999999999999 999999 99999999999999999999999
Q ss_pred CCEEEEEEecC
Q 009518 520 ESTLHLVLRLR 530 (533)
Q Consensus 520 ~~~l~l~~~l~ 530 (533)
|++|+|+.+..
T Consensus 91 g~~i~lv~~~~ 101 (107)
T 1x1m_A 91 GSTVHVLRKSW 101 (107)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEeCCC
Confidence 99999998764
No 139
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=8.7e-14 Score=111.21 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=64.5
Q ss_pred CeEEEEEecCCcEE--EE-EEcCCCcHHHHHHHHcc-ccCCCCCCeEEEec--CcccccCCcccccccccccccee
Q 009518 76 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 145 (533)
Q Consensus 76 ~~~i~vk~~~g~~~--~l-~v~~~~tV~~lK~~i~~-~~gip~~~q~L~~~--G~~L~d~~~l~~y~i~~~s~i~l 145 (533)
.|+|+|+++.|+.+ .+ +|++++||++||++|++ +.|+||++|+|+|. |+.|+|+.+|++|+|.++++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 49999999998764 68 99999999999999999 58999999999976 99999999999999999999876
No 140
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.1e-13 Score=111.09 Aligned_cols=75 Identities=16% Similarity=0.279 Sum_probs=69.1
Q ss_pred CCeeeEEE-eCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009518 455 GGMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 455 ~~m~i~v~-~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l 529 (533)
..+.+.|+ ...|+.++++++++.||.+||+.++...++|++.|+|+|+|+.|.|+.||++|||++|.||||+.+-
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s 89 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFS 89 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEE
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEec
Confidence 44667776 6678899999999999999999999999999999999999999999999999999999999999873
No 141
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1e-13 Score=112.86 Aligned_cols=75 Identities=20% Similarity=0.301 Sum_probs=68.9
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEE--cCeecCCCCcccccCCCCCCEEEEEEecC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLR 530 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~d~~tL~~~~I~~~~~l~l~~~l~ 530 (533)
..|.+++....|+.+.++|++++||++||++|++++||||++|+|+| .|+ |+|+.+|++|+|+.|++|+|+++-.
T Consensus 7 ~~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 7 GRMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred cceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 36888888899999999999999999999999999999999999986 566 9999999999999999999987643
No 142
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.43 E-value=1.6e-13 Score=111.78 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=66.7
Q ss_pred CCeeeEEEeCCCCEE-EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009518 455 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~-~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
..|+|+|+. .|+.+ .++|++++||.+||.+|++.+|+|+++|+|+|.|+.|+|+ +|++|||.+|++|+|...
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 468999995 68899 6999999999999999999999999999999999999999 999999999999998653
No 143
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.1e-13 Score=112.02 Aligned_cols=78 Identities=15% Similarity=0.248 Sum_probs=70.6
Q ss_pred CeEEEEE-ecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccce
Q 009518 76 GMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (533)
Q Consensus 76 ~~~i~vk-~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~~ 153 (533)
.+.|.|+ ...|..++++++++.||.+||++++...++|+++|+|+|+||.|.|+.||.+|||++|.+|||+.+...+-
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~ 93 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPD 93 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTT
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCc
Confidence 4566666 56788999999999999999999999999999999999999999999999999999999999998765443
No 144
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.42 E-value=3.9e-13 Score=108.91 Aligned_cols=74 Identities=24% Similarity=0.453 Sum_probs=68.0
Q ss_pred CCeeeEEEeCCCCEEEEEecCC-----CcHHHHHHHHhhhcCCCCCcEEEEEcCeecCC-CCcccccCCCCCCEEEEEEe
Q 009518 455 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~-----~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d-~~tL~~~~I~~~~~l~l~~~ 528 (533)
..|+|+|+. .|+.+.++++++ .||++||.+|++.+|+|+++|+|+|+|+.|+| +.+|++|||.+|++|+|..+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 568999998 488999999995 99999999999999999999999999999998 66899999999999999875
Q ss_pred c
Q 009518 529 L 529 (533)
Q Consensus 529 l 529 (533)
.
T Consensus 85 ~ 85 (92)
T 1wxv_A 85 K 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 145
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=1.1e-13 Score=110.59 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=64.2
Q ss_pred CeEEEEcCCCcEE--EE-EecCcccHHHHHHHHHh-hhCCCCccceEEEc--cEEcCCCCCccccccccccccce
Q 009518 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (533)
Q Consensus 1 ~~i~~~~~~g~~~--~~-~v~~~dtv~~ik~ki~~-~~~i~~~~q~l~~~--g~~L~~~~tl~~y~i~~~sti~l 69 (533)
|+|+|+++.|+.+ ++ +|.|++||.+||++|++ +.|+|+++|+|.|. |+.|+|++||++|+|.+++++++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 8999999999775 58 99999999999999999 58999999999987 99999999999999999999775
No 146
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.42 E-value=5.8e-13 Score=107.78 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=63.2
Q ss_pred CCeeeEEEeCCC--CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc--Ce---ec-CCCCcccccCCCCCCEEEEE
Q 009518 455 GGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 455 ~~m~i~v~~~~g--~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~--g~---~L-~d~~tL~~~~I~~~~~l~l~ 526 (533)
..+.|+|+...+ +.+++++++++||++||++|+..+||||++|+|+|. |+ .| +|++||++|||++|++|+|+
T Consensus 14 ~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 14 DFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp CEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred CeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 446677876555 478999999999999999999999999999999997 45 55 89999999999999999985
No 147
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.42 E-value=3.6e-13 Score=131.54 Aligned_cols=77 Identities=94% Similarity=1.277 Sum_probs=72.5
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 530 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~ 530 (533)
+..|+|+|++.+|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+++|++|||++|++|+|++|+|
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999986
No 148
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=9e-13 Score=105.60 Aligned_cols=78 Identities=17% Similarity=0.387 Sum_probs=75.9
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..|+|.|++.+|+...++|.+++++..|+...+++.|+|+++++|+|+|+.|.++.|+++|++++|++|++..+++||
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999999999
No 149
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.40 E-value=3.8e-13 Score=106.81 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=60.0
Q ss_pred cCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEe-------cCcccccCCccccccccccccceeeee
Q 009518 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 148 (533)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~-------~G~~L~d~~~l~~y~i~~~s~i~l~~~ 148 (533)
.+.+.+.+.+++++||++||++|+.++|+||++|+|+| .|+.|+|+++|++|+|.+|++|||+-+
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 44567899999999999999999999999999999996 589999999999999999999999864
No 150
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.40 E-value=1.8e-13 Score=111.33 Aligned_cols=73 Identities=21% Similarity=0.333 Sum_probs=67.2
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeee
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~ 149 (533)
..|+|+|+ +.|+++.++|++++||.+||++|+++.|+|+++|+|+|.|+.|+| .+|++|+|.++++|+|+.+.
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCSS
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEecc
Confidence 46889998 678999999999999999999999999999999999999999954 59999999999999998654
No 151
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.39 E-value=4.7e-13 Score=108.31 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=65.1
Q ss_pred cCCeEEEEEecCC--cEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEec--Cc---cc-ccCCcccccccccccccee
Q 009518 74 RGGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHL 145 (533)
Q Consensus 74 ~~~~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~--G~---~L-~d~~~l~~y~i~~~s~i~l 145 (533)
.+.+.|+|+...+ ..++++|++++||++||++|+.++|+|+++|+|+|. |+ .| +|+++|++|+|.+|++|+|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 4567888887665 489999999999999999999999999999999998 44 44 8999999999999999998
Q ss_pred e
Q 009518 146 V 146 (533)
Q Consensus 146 ~ 146 (533)
+
T Consensus 93 v 93 (95)
T 2kjr_A 93 V 93 (95)
T ss_dssp E
T ss_pred E
Confidence 6
No 152
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=4.8e-13 Score=108.33 Aligned_cols=75 Identities=24% Similarity=0.449 Sum_probs=68.6
Q ss_pred CCeEEEEEecCCcEEEEEEcCC-----CcHHHHHHHHccccCCCCCCeEEEecCccccc-CCccccccccccccceeeee
Q 009518 75 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 148 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~-----~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d-~~~l~~y~i~~~s~i~l~~~ 148 (533)
..|+|+|++ .|+.+.++|+++ +||.+||++|++..|+|+++|+|+|+|+.|+| +.+|++|+|.++++|+|+.+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 468999997 588999999996 99999999999999999999999999999988 66999999999999999876
Q ss_pred ec
Q 009518 149 LR 150 (533)
Q Consensus 149 ~~ 150 (533)
..
T Consensus 85 ~~ 86 (92)
T 1wxv_A 85 KN 86 (92)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 153
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.38 E-value=6.5e-13 Score=105.47 Aligned_cols=67 Identities=18% Similarity=0.281 Sum_probs=61.1
Q ss_pred EccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEe-------ccEEcCCCCcccccccccCCeEEEEEE
Q 009518 310 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 310 ~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~-------~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
....++.....+++++||++||++|++++|+||++|||+| .|+.|+|++||.+|+|++|++|||+.+
T Consensus 10 s~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 10 SASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp TTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred cCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 3456677789999999999999999999999999999997 488999999999999999999999854
No 154
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.37 E-value=5.6e-13 Score=110.99 Aligned_cols=73 Identities=29% Similarity=0.407 Sum_probs=68.2
Q ss_pred CeEEEEcCCC---cEEEEEe--------cCc-ccHHHHHHHHHhhh--CCCCcc-ceEEEccEEcCCCCCcccccccccc
Q 009518 1 MQIFVKTLTG---KTITLEV--------ESS-DTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (533)
Q Consensus 1 ~~i~~~~~~g---~~~~~~v--------~~~-dtv~~ik~ki~~~~--~i~~~~-q~l~~~g~~L~~~~tl~~y~i~~~s 65 (533)
|+|+|++.+| ++++++| .++ +||.++|++|+++. |+|++. |+|+|+|+.|+|+++|++|+|.+++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999999 8999994 454 99999999999999 999999 9999999999999999999999999
Q ss_pred ccceEEEe
Q 009518 66 TLHLVLRL 73 (533)
Q Consensus 66 ti~l~~~~ 73 (533)
++|++.+.
T Consensus 93 ~i~lv~~~ 100 (107)
T 1x1m_A 93 TVHVLRKS 100 (107)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 99998854
No 155
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.36 E-value=3.4e-13 Score=109.66 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=65.3
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
..|+|+|+ ..|+.+.+++++++||++||.+|++.+|+|+++|+|+|.|+.|+ +.+|++|+|.+|++|+|+..
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCS
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEec
Confidence 45788888 46889999999999999999999999999999999999999994 45999999999999998753
No 156
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.36 E-value=2.2e-12 Score=104.08 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=73.2
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
+..|+|.|++.+|+.+.++|.+++++..|+..++++.|+|+++++|+|+|+.|.++.|+++|++++|++|++.++++||
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 3568899999999999999999999999999999999999999999999999999999999999999999999999998
No 157
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.35 E-value=8.9e-13 Score=128.75 Aligned_cols=77 Identities=92% Similarity=1.269 Sum_probs=72.5
Q ss_pred ecCCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeee
Q 009518 73 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 149 (533)
Q Consensus 73 ~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~ 149 (533)
..+.|+|+||+++|+.+.++|++++||++||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|++++
T Consensus 230 ~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 230 ITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp SCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999875
No 158
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.35 E-value=1.8e-12 Score=105.18 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=61.8
Q ss_pred CeeeEEEeCCC--CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCe---e----cCCCCcccccCCCCCCEEEEE
Q 009518 456 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 456 ~m~i~v~~~~g--~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~---~----L~d~~tL~~~~I~~~~~l~l~ 526 (533)
.+.++|..... ..+++++++++||++||++|+..+||||++|+|+|.|+ . ++|+++|++|||++|++|+|+
T Consensus 14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 45666665333 47899999999999999999999999999999999883 3 489999999999999999986
Q ss_pred E
Q 009518 527 L 527 (533)
Q Consensus 527 ~ 527 (533)
-
T Consensus 94 d 94 (97)
T 2kj6_A 94 D 94 (97)
T ss_dssp E
T ss_pred e
Confidence 3
No 159
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.34 E-value=1.4e-12 Score=105.79 Aligned_cols=73 Identities=15% Similarity=0.205 Sum_probs=63.9
Q ss_pred CCeEEEEEecCC--cEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCc---c----cccCCcccccccccccccee
Q 009518 75 GGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHL 145 (533)
Q Consensus 75 ~~~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~---~----L~d~~~l~~y~i~~~s~i~l 145 (533)
+.+.++|+.... ..++++|++++||++||++|+.++|+||++|+|+|.|+ . ++|+++|++|+|.+|++|+|
T Consensus 13 ~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihl 92 (97)
T 2kj6_A 13 DSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHI 92 (97)
T ss_dssp CCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEE
T ss_pred ceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEE
Confidence 456777776444 47999999999999999999999999999999999984 3 48999999999999999998
Q ss_pred ee
Q 009518 146 VL 147 (533)
Q Consensus 146 ~~ 147 (533)
+-
T Consensus 93 vd 94 (97)
T 2kj6_A 93 ID 94 (97)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 160
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.33 E-value=1.5e-12 Score=131.04 Aligned_cols=79 Identities=30% Similarity=0.564 Sum_probs=74.3
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhh---hcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEE-EEEEec
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRL 529 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~---~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l-~l~~~l 529 (533)
...|+|+|++..|+.+.++|.+++||.+||.+|+. ++|+|+++|+|+|+|+.|+|++||++|||++|++| +++.|.
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~ 84 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 84 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECC
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecC
Confidence 35799999999999999999999999999999999 67899999999999999999999999999999999 888998
Q ss_pred CCC
Q 009518 530 RGG 532 (533)
Q Consensus 530 ~GG 532 (533)
+||
T Consensus 85 ~~~ 87 (368)
T 1oqy_A 85 KAG 87 (368)
T ss_dssp CSS
T ss_pred CCC
Confidence 876
No 161
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=3.7e-12 Score=104.56 Aligned_cols=80 Identities=15% Similarity=0.337 Sum_probs=76.6
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG~ 533 (533)
+..|+|.|++.+|+.+.++|.+++++..|+..++++.|+|+++++|+|+|+.|.++.|+++|++++|++|++.++++||.
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999993
No 162
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.30 E-value=6.4e-12 Score=103.08 Aligned_cols=78 Identities=13% Similarity=0.317 Sum_probs=72.2
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
+..|+|.|++ +|+...++|.+++++..|+..++++.|+++++++|+|+|+.|.++.|+++|++++|++|++.++++||
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 3558899999 99999999999999999999999999999999999999999999999999999999999999999998
No 163
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.29 E-value=2.5e-12 Score=129.34 Aligned_cols=77 Identities=30% Similarity=0.550 Sum_probs=71.3
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHcc---ccCCCCCCeEEEecCcccccCCccccccccccccc-eeeeeec
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 150 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~---~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i-~l~~~~~ 150 (533)
..|+|+||+++|+++.++|++++||.+||++|+. +.|+|+++|+|+|+||.|+|+++|++|+|.++++| +++.+++
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 4699999999999999999999999999999999 67899999999999999999999999999999999 6666654
Q ss_pred c
Q 009518 151 G 151 (533)
Q Consensus 151 ~ 151 (533)
+
T Consensus 86 ~ 86 (368)
T 1oqy_A 86 A 86 (368)
T ss_dssp S
T ss_pred C
Confidence 4
No 164
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.28 E-value=6.8e-12 Score=102.03 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=61.3
Q ss_pred eeeEEEeCCC-CEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcC---ee----cCCCCcccccCCCCCCEEEEEE
Q 009518 457 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 457 m~i~v~~~~g-~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g---~~----L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
+.|+|+.... ..+.+++++++||++||.+|+..+|+|+++|+|+|.| +. ++|+++|++|||++|++|||.-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 5566666443 2688999999999999999999999999999999986 44 4899999999999999999864
No 165
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.28 E-value=2.5e-12 Score=106.97 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=65.8
Q ss_pred CeeeEEEeCCCCEEEEEec-CCCcHHHHHHHHhhhcCCCCCcEEEEEcCe-----------e----cCCCCcccccCCCC
Q 009518 456 GMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQK 519 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~-~~~tV~~lK~~I~~~~gip~~~q~L~~~g~-----------~----L~d~~tL~~~~I~~ 519 (533)
.|.|+|++.+|+. .++|. +++||++||.+|++.+|+|+++|+|++.|+ . ++|++||++|||++
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 4899999999965 78999 999999999999999999999999999888 4 57899999999999
Q ss_pred CCEEEEEEe
Q 009518 520 ESTLHLVLR 528 (533)
Q Consensus 520 ~~~l~l~~~ 528 (533)
|++|||...
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999998754
No 166
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=7.9e-12 Score=100.88 Aligned_cols=77 Identities=17% Similarity=0.392 Sum_probs=73.4
Q ss_pred CceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEEEEecCC
Q 009518 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 380 (533)
Q Consensus 304 ~~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~~ 380 (533)
.|+|.|++.+|+.+.+.|.++++++.|+++++++.|+|++++||+|.|+.|+++.|+++|+++++++|+++.+..++
T Consensus 7 ~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred eEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999887655
No 167
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.27 E-value=4.5e-12 Score=104.82 Aligned_cols=80 Identities=15% Similarity=0.391 Sum_probs=76.5
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG~ 533 (533)
+..|+|.|++.+|+.+.++|.+++++..|+..++++.|+|+++++|+|+|+.|.++.|+++|++++|++|++.+.++||+
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999994
No 168
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.26 E-value=5e-12 Score=105.10 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=67.1
Q ss_pred CeEEEEEecCCcEEEEEEc-CCCcHHHHHHHHccccCCCCCCeEEEecCc-----------c----cccCCccccccccc
Q 009518 76 GMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQK 139 (533)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~G~-----------~----L~d~~~l~~y~i~~ 139 (533)
.|.|+||+.+|+. .++|+ +++||.+||++|+.++|+|+++|+|+|.|+ . ++|+.+|++|+|.+
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 4999999999976 78999 999999999999999999999999999988 4 58999999999999
Q ss_pred cccceeeeee
Q 009518 140 ESTLHLVLRL 149 (533)
Q Consensus 140 ~s~i~l~~~~ 149 (533)
|++|||....
T Consensus 86 G~~L~l~~~~ 95 (107)
T 1wf9_A 86 GSMVYLAYEG 95 (107)
T ss_dssp TCEEECCCSS
T ss_pred CCEEEEEeCC
Confidence 9999998653
No 169
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.24 E-value=1e-11 Score=100.97 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=63.0
Q ss_pred CeEEEEEecCCc-EEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecC---cc----cccCCccccccccccccceeee
Q 009518 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 76 ~~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G---~~----L~d~~~l~~y~i~~~s~i~l~~ 147 (533)
.+.|+|+..... .+.++|++++||++||++|+.++|+|+++|+|+|.| +. ++|+++|++|+|.+|++||+..
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 366777765443 689999999999999999999999999999999987 43 5899999999999999999975
No 170
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.22 E-value=1.6e-11 Score=104.57 Aligned_cols=74 Identities=14% Similarity=0.231 Sum_probs=63.3
Q ss_pred ceeEEEccCCc-eEEEEeccCccHHHHHHHhccccCCCCCceeEEecc---E---E-cCCCCcccccccccCCeEEEEEE
Q 009518 305 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 305 ~~i~v~~~~g~-~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g---~---~-L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
+.++|+...+. .+++.+.+++||++||++|+.+.||||++|||+|.| + . ++|+++|.+|+|+++++||+...
T Consensus 7 v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 7 YDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 45667665443 789999999999999999999999999999999987 3 2 48999999999999999999864
Q ss_pred ec
Q 009518 377 LR 378 (533)
Q Consensus 377 ~~ 378 (533)
.+
T Consensus 87 ~p 88 (122)
T 1t0y_A 87 TG 88 (122)
T ss_dssp TT
T ss_pred CC
Confidence 33
No 171
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.21 E-value=4.4e-11 Score=91.74 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.8
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~ 526 (533)
|+|.|++.+|+...++|.+++++..|+.+.+++.|+|+++++++|+|+.|.++.|+++|++++|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6789999999999999999999999999999999999999999999999999999999999999999985
No 172
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.19 E-value=6.4e-11 Score=94.78 Aligned_cols=79 Identities=16% Similarity=0.389 Sum_probs=74.0
Q ss_pred CCeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCCc
Q 009518 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 305 (533)
Q Consensus 227 ~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~ 305 (533)
..+.|.|++.+|+.+.+.|++++++..|+..++++.|+|++.++|+|+|+.|.++.|+++|++.+||+|+++..+.+|.
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 3467889999999999999999999999999999999999999999999999999999999999999999998877653
No 173
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.18 E-value=5.6e-11 Score=101.16 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=62.4
Q ss_pred CeeeEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcC---e---ec-CCCCcccccCCCCCCEEEEEE
Q 009518 456 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---QL-EDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 456 ~m~i~v~~~~g~-~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g---~---~L-~d~~tL~~~~I~~~~~l~l~~ 527 (533)
.+.|+|+...+. .+.+++++++||++||.+|+..+|||+++|+|+|.| + .| +|++||++|||++|++|||..
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 356777765442 688999999999999999999999999999999977 4 34 789999999999999999875
No 174
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.18 E-value=2.5e-11 Score=96.71 Aligned_cols=71 Identities=24% Similarity=0.343 Sum_probs=63.4
Q ss_pred eeeEEEeCCCCEEEEE-ecCCCcHHHHHHHHhhhcCCCCCcEEEEEc--CeecC---CCCcccccCCCCCCEEEEEEe
Q 009518 457 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~-v~~~~tV~~lK~~I~~~~gip~~~q~L~~~--g~~L~---d~~tL~~~~I~~~~~l~l~~~ 528 (533)
|+|+|++.+|+ +.++ +++++||++||.+|++.+|+|++.|+|+|+ +++|+ |+.+|++|||.+|++|+|.-.
T Consensus 1 m~i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 78999999996 4577 999999999999999999999999999987 47874 678999999999999998643
No 175
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.15 E-value=1.6e-10 Score=90.21 Aligned_cols=73 Identities=10% Similarity=0.254 Sum_probs=69.3
Q ss_pred cCCeeeEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 009518 454 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 454 ~~~m~i~v~~~~g~-~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~ 526 (533)
+..|+|.|++.+|+ .+.++|.+++++..|+...+++.|+|+++++|+|+|+.|.++.|+++|++++|++|++.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 45689999999996 89999999999999999999999999999999999999999999999999999999985
No 176
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.14 E-value=1e-10 Score=89.67 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.6
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEE
Q 009518 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
++|.|++.+|+.+.+.+.++++++.|+++++++.|+|+++++|+|.|..|+++.|+++|+++++++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 5688999999999999999999999999999999999999999999999999999999999999999985
No 177
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.13 E-value=1.6e-10 Score=93.19 Aligned_cols=77 Identities=16% Similarity=0.364 Sum_probs=71.1
Q ss_pred CCeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecC
Q 009518 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 303 (533)
Q Consensus 227 ~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~ 303 (533)
..+.|.|++.+|+.+.+.|++++++..|+..++++.|+|++.++|+|+|+.|.++.|+++|++.+||+|+++.++.+
T Consensus 16 ~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 16 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred CeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999887654
No 178
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.12 E-value=3.8e-11 Score=95.67 Aligned_cols=71 Identities=24% Similarity=0.371 Sum_probs=63.7
Q ss_pred eEEEEEecCCcEEEEE-EcCCCcHHHHHHHHccccCCCCCCeEEEec--Ccccc---cCCccccccccccccceeeee
Q 009518 77 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 148 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~L~~~--G~~L~---d~~~l~~y~i~~~s~i~l~~~ 148 (533)
|+|.||+.+|+.. ++ +++++||++||++|+++.|+|+++|+|+|. ++.|+ |+.+|++|||.+|++|++...
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 7899999999654 77 999999999999999999999999999987 48874 689999999999999998754
No 179
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.10 E-value=5.9e-11 Score=117.69 Aligned_cols=76 Identities=21% Similarity=0.434 Sum_probs=68.0
Q ss_pred CeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEE---ecCcccccCCccccccccccccceeeeeeccc
Q 009518 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
.|.|+|| ++|+.++++|++++||++||++|++++|+||++|+|+ |.|+.|+|+.+|++|+|++|++|+|+..+...
T Consensus 5 ~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~~ 83 (320)
T 3shq_A 5 EVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEAD 83 (320)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC--
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchhh
Confidence 4788998 6899999999999999999999999999999999999 89999999999999999999999998766543
No 180
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.09 E-value=2.2e-10 Score=93.88 Aligned_cols=78 Identities=15% Similarity=0.361 Sum_probs=73.0
Q ss_pred CCeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCC
Q 009518 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (533)
Q Consensus 227 ~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~ 304 (533)
..+.|.|++.+|+.+.+.|++++++..|+..++++.|+|++.++|+|+|+.|.++.|+++|++.+||+|+++.++.+|
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 356788999999999999999999999999999999999999999999999999999999999999999998877654
No 181
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.06 E-value=1.4e-10 Score=115.03 Aligned_cols=72 Identities=22% Similarity=0.460 Sum_probs=65.9
Q ss_pred CeeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEe---ecCccccCCccccccccccCCeEEEEEE
Q 009518 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 452 (533)
Q Consensus 380 ~~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~---~~g~~l~d~~~L~~~~i~~~~~l~l~~~ 452 (533)
.++|+|| |+|+++++++++++||.+||++|++++|||+++|+|+ ++|+.|+|+.+|++|+|++|++++|+-.
T Consensus 5 ~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 5 EVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp EEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred eEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 3678898 8999999999999999999999999999999999999 7899999999999999999999999843
No 182
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.06 E-value=4.3e-10 Score=87.76 Aligned_cols=72 Identities=10% Similarity=0.258 Sum_probs=68.2
Q ss_pred CCceeEEEccCCc-eEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEE
Q 009518 303 GGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 303 ~~~~i~v~~~~g~-~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
..+.|.|++.+|+ .+.+.+.++++++.|+..++++.|+|+++++|+|.|..|+++.|+++|+++++++|++.
T Consensus 6 ~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 6 QELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 3467999999996 89999999999999999999999999999999999999999999999999999999875
No 183
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.05 E-value=3.1e-10 Score=93.80 Aligned_cols=79 Identities=15% Similarity=0.400 Sum_probs=73.5
Q ss_pred CCeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCCc
Q 009518 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 305 (533)
Q Consensus 227 ~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~ 305 (533)
..+.|.|++.+|+.+.+.|++.+++..|+..++++.|+|+..++|+|+|+.|.++.|+++|++.+||+|+++..+.+|.
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 4578889999999999999999999999999999999999999999999999999999999999999999998876653
No 184
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.05 E-value=3.9e-10 Score=92.44 Aligned_cols=75 Identities=12% Similarity=0.304 Sum_probs=69.7
Q ss_pred CeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecC
Q 009518 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 303 (533)
Q Consensus 228 ~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~ 303 (533)
.+.|.|++ +|+.+.+.|++++++..|+..++++.|+++..++|+|+|+.|.++.|.++|++.+||+|+++.++.+
T Consensus 31 ~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~G 105 (106)
T 2eke_C 31 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 105 (106)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred eEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeeccc
Confidence 46788999 9999999999999999999999999999999999999999999999999999999999999877654
No 185
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.93 E-value=3.3e-09 Score=86.43 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=60.8
Q ss_pred eeeEEEe---CCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcC-------eec-CCCCcccccCCCCCCEEEE
Q 009518 457 MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 457 m~i~v~~---~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g-------~~L-~d~~tL~~~~I~~~~~l~l 525 (533)
+.|+|++ .+|+.....+++++||++||.+|+..+|+|+..|+|+|.+ ..| +|.++|++|||.+|++|++
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 4556654 4677889999999999999999999999999999999863 235 5778999999999999998
Q ss_pred EE
Q 009518 526 VL 527 (533)
Q Consensus 526 ~~ 527 (533)
..
T Consensus 90 ~d 91 (97)
T 1wjn_A 90 RW 91 (97)
T ss_dssp EC
T ss_pred Ee
Confidence 76
No 186
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.91 E-value=6.2e-09 Score=86.07 Aligned_cols=77 Identities=17% Similarity=0.385 Sum_probs=73.3
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 531 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~G 531 (533)
..++|.|+..+|+...+.|.+++++..|+...+++.|+++++++++|+|..|.++.|.+++++++|++|++..+..|
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 46788889999999999999999999999999999999999999999999999999999999999999999998876
No 187
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.2e-08 Score=92.93 Aligned_cols=77 Identities=13% Similarity=0.302 Sum_probs=72.8
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.-++|.|+ .+|+...++|.+++++..|+...+++.|+|++++|++|+|++|.++.|.+++++++|++|++..+++||
T Consensus 28 ~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 28 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred CeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 34677776 589999999999999999999999999999999999999999999999999999999999999999998
No 188
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.78 E-value=9.7e-09 Score=91.18 Aligned_cols=77 Identities=12% Similarity=0.282 Sum_probs=72.7
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..++|.|+ .+|+...++|.+++++..|+...+++.|+|+.+++++|+|+.|.++.|.+++++++|++|++...++||
T Consensus 56 e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 56 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp CEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred CcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 34677776 589999999999999999999999999999999999999999999999999999999999999999999
No 189
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.77 E-value=2.8e-06 Score=90.12 Aligned_cols=347 Identities=12% Similarity=0.164 Sum_probs=223.2
Q ss_pred EEeeecCCchHHHHHHHhhhhcCCCCCCeEEEeC----Cee----c-----CCCCCcccccCCCCCEEEEEEEec-----
Q 009518 165 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GKQ----L-----EDGRTLADYNIQKESTLHLVLRLR----- 226 (533)
Q Consensus 165 ~~i~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~----g~~----L-----~d~~tl~~y~I~~~s~i~l~~~~~----- 226 (533)
.++.|....|+.+|++.+.+..|+|+++|||-.- ++- + ....++.++.- .++.+.+.+...
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~~-~~~~~~lflE~~~~~~~ 116 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELSD-NENPWTIFLETVDPELA 116 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHHT-SCSSEEEEEEECCHHHH
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHhc-cCCceEEEEEecccccC
Confidence 3578999999999999999999999999998321 111 1 11223333321 233344444311
Q ss_pred ------------CCeeEEEEcCC--CCeEE----EEeecCccHHHHHHHhhhhcCCCCCCeeEEec------Ccccc-CC
Q 009518 227 ------------GGMQIFVKTLT--GKTIT----LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DG 281 (533)
Q Consensus 227 ------------~~~~i~V~~~~--g~~i~----~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~------g~~L~-d~ 281 (533)
..+-+|+|-.+ .+++. +.|...++|.++-..|.++.|+|++.-...|. -+.|+ ..
T Consensus 117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~ 196 (530)
T 2ylm_A 117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD 196 (530)
T ss_dssp TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence 02556777543 45554 67889999999999999999999997666663 34466 68
Q ss_pred cccccc--ccCCCceEEEEEeec-C-----------------CceeEEE---ccCCceEEEEeccCccHHHHHHHhcccc
Q 009518 282 RTLADY--NIQKESTLHLVLRLR-G-----------------GMQIFVK---TLTGKTITLEVESSDTIDNVKAKIQDKE 338 (533)
Q Consensus 282 ~tl~~~--~i~~~~ti~l~~~~~-~-----------------~~~i~v~---~~~g~~~~~~v~~~~ti~~lK~~i~~~~ 338 (533)
.|+... .+.+||.|-+..... + .+.+.+. ..+...+++.++...|-.++.++|.+..
T Consensus 197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l 276 (530)
T 2ylm_A 197 VSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRL 276 (530)
T ss_dssp SBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHH
T ss_pred ccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHh
Confidence 899999 999999996655432 1 0222222 2457789999999999999999999999
Q ss_pred CCCCCceeEEec----cE---E--cCCCCccccccc----ccCCeEEEEEEe--------cCCeeEEEEecCC--cEEEE
Q 009518 339 GIPPDQQRLIFA----GK---Q--LEDGRTLADYNI----QKESTLHLVLRL--------RGGMQIFVKTLTG--KTITL 395 (533)
Q Consensus 339 ~ip~~~q~L~~~----g~---~--L~~~~tl~~y~i----~~~~~l~l~~~~--------~~~~~i~vk~~~g--~~~~~ 395 (533)
+++|..-|+.-. |. . ...+.+|.+.=- ...+.+++-.-. ...+.|+.-..+. ..+.+
T Consensus 277 ~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~YevL~ipl~ElE~~r~~kv~w~~~~~~~~~~~l 356 (530)
T 2ylm_A 277 NTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQLKMKITDFENRRSFKCIWLNSQFREEEITL 356 (530)
T ss_dssp TSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEECSSCHHHHHSBCCEEEEEECTTSCEEEEEE
T ss_pred CCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEECCCCHHHHhhCceEEEEEECCCCceEEEEE
Confidence 999988776521 21 1 223455543221 122445554221 2234443332222 25778
Q ss_pred EecCCCcHHHHHHHhhcccCCCC---cceeEe--ecCc---cccCCccccccccccCCeEEEEEEec--------CCeee
Q 009518 396 EVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRLR--------GGMQI 459 (533)
Q Consensus 396 ~v~~~~Tv~~lK~~I~~~~~vp~---~~q~l~--~~g~---~l~d~~~L~~~~i~~~~~l~l~~~~~--------~~m~i 459 (533)
-++.+.||.||-..++.+.+++. .+-++. ++++ .++++.+++...=....+++.-.-+. ..+-|
T Consensus 357 ~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~li 436 (530)
T 2ylm_A 357 YPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEMLV 436 (530)
T ss_dssp CCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEEE
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEEE
Confidence 88999999999999999999873 444444 4554 36777777654322233433322111 12334
Q ss_pred EEEe-------CCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcE---E--EEEcCe--ecCCCCcc
Q 009518 460 FVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ---R--LIFAGK--QLEDGRTL 512 (533)
Q Consensus 460 ~v~~-------~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q---~--L~~~g~--~L~d~~tL 512 (533)
.|.. .-|..+.+.|.+.+|+.++|++|.++.|++..++ + ++-.++ .++|+..+
T Consensus 437 ~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d~~ 503 (530)
T 2ylm_A 437 TVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEYE 503 (530)
T ss_dssp EEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTTTCC
T ss_pred EEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCccce
Confidence 4422 1267899999999999999999999999986533 3 343444 57765433
No 190
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.76 E-value=1.8e-08 Score=82.05 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=61.8
Q ss_pred eEEEEEe---cCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecC-------ccc-ccCCcccccccccccccee
Q 009518 77 MQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLHL 145 (533)
Q Consensus 77 ~~i~vk~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G-------~~L-~d~~~l~~y~i~~~s~i~l 145 (533)
+.|+|+. .+|..+...++++.||++||.+|+...|+|+..|+|.|.+ ..| +|..+|.+|++.+|++||+
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 4566664 4678899999999999999999999999999999999873 125 6789999999999999999
Q ss_pred eee
Q 009518 146 VLR 148 (533)
Q Consensus 146 ~~~ 148 (533)
...
T Consensus 90 ~d~ 92 (97)
T 1wjn_A 90 RWS 92 (97)
T ss_dssp ECC
T ss_pred Eec
Confidence 764
No 191
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.72 E-value=4.7e-08 Score=80.77 Aligned_cols=73 Identities=16% Similarity=0.397 Sum_probs=68.9
Q ss_pred CeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEe
Q 009518 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 228 ~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
.+.|.|+..+|+.+.+.|++.+++..|+..++++.|+++..++|.|+|+.|.++.|.+++++.+||+|+++..
T Consensus 40 ~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 40 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred eEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 4677788889999999999999999999999999999999999999999999999999999999999998764
No 192
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.68 E-value=2.4e-09 Score=96.37 Aligned_cols=79 Identities=13% Similarity=0.311 Sum_probs=1.4
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG~ 533 (533)
+..|+|.| ..+|+...++|.+++++..|+...+++.|+|++++|++|+|+++.++.|.+++++++|++|++...++||+
T Consensus 19 ~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~ 97 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGL 97 (227)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCc
Confidence 45688888 78999999999999999999999999999999999999999999999999999999999999999999994
No 193
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.7e-07 Score=83.23 Aligned_cols=99 Identities=10% Similarity=0.198 Sum_probs=80.4
Q ss_pred CCeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCCc-
Q 009518 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM- 305 (533)
Q Consensus 227 ~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~- 305 (533)
..+.+.|+ .+|+.+.+.|++.+++..|+..++++.|+|++++||.|+|+.+.++.|.+++++.+||+|+++..+.++.
T Consensus 28 ~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~k 106 (200)
T 3pge_A 28 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGGG 106 (200)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC-
T ss_pred CeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCcC
Confidence 44677786 4899999999999999999999999999999999999999999999999999999999999999876553
Q ss_pred ---eeEEEccCCceEEEEeccCccH
Q 009518 306 ---QIFVKTLTGKTITLEVESSDTI 327 (533)
Q Consensus 306 ---~i~v~~~~g~~~~~~v~~~~ti 327 (533)
.+.++ -+-..-.+.+.+++.+
T Consensus 107 d~v~Fs~~-GD~G~~~i~l~~~~~~ 130 (200)
T 3pge_A 107 ETIKFVAD-GDIGSGSVIIKPFVDM 130 (200)
T ss_dssp CCEEEEEE-CSSCEEEEEECCBCCS
T ss_pred ceEEEEee-ccCCeEEEEEecCCCC
Confidence 33332 3333444455555444
No 194
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.54 E-value=5.6e-05 Score=80.16 Aligned_cols=329 Identities=12% Similarity=0.175 Sum_probs=211.7
Q ss_pred EEEEEcCCCcHHHHHHHHccccCCCCCCeEEEec-Ccc-------c-c----cCCccccccccccccceeeeee------
Q 009518 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQ-------L-E----DGRTLADYNIQKESTLHLVLRL------ 149 (533)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-G~~-------L-~----d~~~l~~y~i~~~s~i~l~~~~------ 149 (533)
.++.|..++|+.+||+++++..|+|+++|||..- .++ + + ...++.++. ..++.+.+.+..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~-~~~~~~~lflE~~~~~~~ 116 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELS-DNENPWTIFLETVDPELA 116 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHH-TSCSSEEEEEEECCHHHH
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHh-ccCCceEEEEEecccccC
Confidence 3578999999999999999999999999998732 111 1 1 112233321 123223333211
Q ss_pred -----------ccceeeeeeecc--CceEE----eeecCCchHHHHHHHhhhhcCCCCCCeEEEeC------CeecC-CC
Q 009518 150 -----------RGGMQIFVKTLT--GKTIT----LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DG 205 (533)
Q Consensus 150 -----------~~~~~i~v~~~~--g~~~~----i~v~~~dtV~~lK~~i~~~~gip~~~q~L~~~------g~~L~-d~ 205 (533)
...+.|++|..+ .+++. +.|+..++|.+|-..|.+..|+|++.-..+|. -..|+ .+
T Consensus 117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~ 196 (530)
T 2ylm_A 117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD 196 (530)
T ss_dssp TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence 113677888664 33433 56889999999999999999999987666665 24466 57
Q ss_pred CCcccc--cCCCCCEEEEEEEec-C-----------------CeeEEEEc---CCCCeEEEEeecCccHHHHHHHhhhhc
Q 009518 206 RTLADY--NIQKESTLHLVLRLR-G-----------------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKE 262 (533)
Q Consensus 206 ~tl~~y--~I~~~s~i~l~~~~~-~-----------------~~~i~V~~---~~g~~i~~~v~~~~tV~~lK~~I~~~~ 262 (533)
.|+.+. .+.+|+.|.+-.... . .+.|.... .+...+.+++....|-.+|.+.|.++.
T Consensus 197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l 276 (530)
T 2ylm_A 197 VSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRL 276 (530)
T ss_dssp SBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHH
T ss_pred ccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHh
Confidence 899999 999999997665433 1 12333332 346789999999999999999999999
Q ss_pred CCCCCCeeEEec----Cc---c--ccCCcccccccc---C-CCceEEEEEeec---------CCceeEEEccCCc--eEE
Q 009518 263 GIPPDQQRLIFA----GK---Q--LEDGRTLADYNI---Q-KESTLHLVLRLR---------GGMQIFVKTLTGK--TIT 318 (533)
Q Consensus 263 gip~~~q~L~~~----g~---~--L~d~~tl~~~~i---~-~~~ti~l~~~~~---------~~~~i~v~~~~g~--~~~ 318 (533)
+.+|+.-||.-. +. . ...+.+|.+.=- . ..+.++.. .+. ..+.++......+ .+.
T Consensus 277 ~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~Ye-vL~ipl~ElE~~r~~kv~w~~~~~~~~~~~ 355 (530)
T 2ylm_A 277 NTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQ-QLKMKITDFENRRSFKCIWLNSQFREEEIT 355 (530)
T ss_dssp TSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEE-ECSSCHHHHHSBCCEEEEEECTTSCEEEEE
T ss_pred CCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEE-ECCCCHHHHhhCceEEEEEECCCCceEEEE
Confidence 998888777521 22 1 122344443210 1 11344332 222 2244433333322 456
Q ss_pred EEeccCccHHHHHHHhccccCCC---CCceeEE--ecc---EEcCCCCcccccccccCCeEEEEEEec--------CCee
Q 009518 319 LEVESSDTIDNVKAKIQDKEGIP---PDQQRLI--FAG---KQLEDGRTLADYNIQKESTLHLVLRLR--------GGMQ 382 (533)
Q Consensus 319 ~~v~~~~ti~~lK~~i~~~~~ip---~~~q~L~--~~g---~~L~~~~tl~~y~i~~~~~l~l~~~~~--------~~~~ 382 (533)
+.+..+.||.||.+.++.+.+++ ....||+ +++ +.++++.++...+=....++++-.-+. +.+-
T Consensus 356 l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~l 435 (530)
T 2ylm_A 356 LYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEML 435 (530)
T ss_dssp ECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEE
T ss_pred EEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEE
Confidence 67789999999999999999997 4556654 333 456677777654322234444432211 1122
Q ss_pred EEEEec-------CCcEEEEEecCCCcHHHHHHHhhcccCCCCc
Q 009518 383 IFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPPD 419 (533)
Q Consensus 383 i~vk~~-------~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~ 419 (533)
|.|-.. =|..+.+.+.++.|+.++|++|+.++|||-.
T Consensus 436 i~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~k 479 (530)
T 2ylm_A 436 VTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEK 479 (530)
T ss_dssp EEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHH
T ss_pred EEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHh
Confidence 333111 2567788999999999999999999999864
No 195
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.51 E-value=1.6e-07 Score=83.40 Aligned_cols=77 Identities=12% Similarity=0.299 Sum_probs=71.2
Q ss_pred CeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCCc
Q 009518 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 305 (533)
Q Consensus 228 ~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~ 305 (533)
.+.|.|. .+|+.+.+.|++.+++..|+...+++.|+++..++|.|+|+.+.++.|.+++++.+||+|+++..+.+|.
T Consensus 57 ~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 57 HINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp EEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred cEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 4566676 4899999999999999999999999999999999999999999999999999999999999998887764
No 196
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.49 E-value=9e-07 Score=66.18 Aligned_cols=69 Identities=16% Similarity=0.320 Sum_probs=61.7
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCC-cEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009518 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
+.++......+.+.|.++++|.+|.+.-+.+.|||++ ..+|.|+|..|+++++++||++.+|+.|.+.+
T Consensus 12 ~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 12 LLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 4445544445889999999999999999999999999 99999999999999999999999999999875
No 197
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.35 E-value=2.2e-07 Score=72.27 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=61.0
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCee---c--CCCCcccccCCCCCCEEEEE
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~---L--~d~~tL~~~~I~~~~~l~l~ 526 (533)
.+|.|.+++.+| .+.+++++++|+.+|+.+|++.+++|++.|.++++..+ | .++.+|+++||.+|++|++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 358899999998 57788999999999999999999999999888765544 3 37789999999999999875
No 198
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.32 E-value=7.1e-08 Score=86.91 Aligned_cols=80 Identities=13% Similarity=0.301 Sum_probs=1.1
Q ss_pred ecCCeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCC
Q 009518 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (533)
Q Consensus 225 ~~~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~ 304 (533)
+...|.+.| ..+|+.+.|.|++++.+..|+..++++.|++++.++|.|+|+.+.++.|.+++++.+||+|+++....+|
T Consensus 18 p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG 96 (227)
T 3v7o_A 18 PETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (227)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCC
Confidence 334567778 7789999999999999999999999999999999999999999999999999999999999998887776
Q ss_pred c
Q 009518 305 M 305 (533)
Q Consensus 305 ~ 305 (533)
.
T Consensus 97 ~ 97 (227)
T 3v7o_A 97 L 97 (227)
T ss_dssp C
T ss_pred c
Confidence 4
No 199
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.20 E-value=5.8e-06 Score=66.33 Aligned_cols=73 Identities=12% Similarity=0.273 Sum_probs=67.0
Q ss_pred cCCeeeEEEeCCCC-EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 009518 454 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 526 (533)
Q Consensus 454 ~~~m~i~v~~~~g~-~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~ 526 (533)
+..+.|.|+..+|+ ...+.|.+++++..|....+++.|+++...+++|+|..|.++.|.+++++++|++|.+.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 34567777888885 78999999999999999999999999999999999999999999999999999999874
No 200
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=98.19 E-value=1.4e-05 Score=81.36 Aligned_cols=135 Identities=23% Similarity=0.329 Sum_probs=108.9
Q ss_pred CceEEEEeccCccHHHHHHHhccccC----CCCCceeEEe------ccEEcCCCCcccccccccCCeEEEEEEecCCeeE
Q 009518 314 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 383 (533)
Q Consensus 314 g~~~~~~v~~~~ti~~lK~~i~~~~~----ip~~~q~L~~------~g~~L~~~~tl~~y~i~~~~~l~l~~~~~~~~~i 383 (533)
+-+-++.++|++||.|+..+|+++.+ .+++++.|.- .|+||.+.+||..|++++++.+.... ..+.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~---~~~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK---KQRPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE---CEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC---ceeEE
Confidence 77889999999999999999998885 4788899887 68999999999999999999999985 45588
Q ss_pred EEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEe--ecC---------ccccCCccccccccccCCeEEEEEE
Q 009518 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAG---------KQLEDGRTLADYNIQKESTLHLVLR 452 (533)
Q Consensus 384 ~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~--~~g---------~~l~d~~~L~~~~i~~~~~l~l~~~ 452 (533)
.|..++|....+.+++++|+.++-..|+++.|+.. ...+. +.. .-|+.++++.+.+.....++++..+
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e-~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvK 167 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITN-HDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRK 167 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSC-GGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCC-ccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEEE
Confidence 99999999999999999999999999999999875 33322 211 1245566676666555556665443
No 201
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.19 E-value=2.1e-07 Score=92.13 Aligned_cols=79 Identities=13% Similarity=0.320 Sum_probs=0.7
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 533 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG~ 533 (533)
...++|.|+. +|+...++|.+++++..|+...+++.|++++++++.|+|+.+.++.|.+++++++|++|++..+++|||
T Consensus 19 ~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence 3456777776 678889999999999999999999999999999999999999999999999999999999999999996
No 202
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=98.18 E-value=3.1e-06 Score=65.99 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=71.0
Q ss_pred cCCceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEEEEec
Q 009518 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 378 (533)
Q Consensus 302 ~~~~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~~~ 378 (533)
.++|.+.|...+|+..++.|.|++|+.|+=+.-|.++|++++++.|.|+++.|+-+..++--||++++.|.|....+
T Consensus 7 ~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 7 GGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp ---CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred CCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999997654
No 203
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.08 E-value=8.1e-06 Score=75.87 Aligned_cols=78 Identities=13% Similarity=0.317 Sum_probs=72.7
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
+..+.|.|+. +|+...+++.+++++..|+...+++.|+|+++++++|+|+.+.++.|..++.++++++|++.....||
T Consensus 19 ~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred CCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccc
Confidence 3456677776 77888999999999999999999999999999999999999999999999999999999999999998
No 204
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=98.06 E-value=4.6e-06 Score=70.11 Aligned_cols=71 Identities=27% Similarity=0.393 Sum_probs=61.7
Q ss_pred eeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCC-------------------------------------ceeEE
Q 009518 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 348 (533)
Q Consensus 306 ~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~-------------------------------------~q~L~ 348 (533)
.+-|++++|...++.|+.+.||.+++..||.+.||+.. .|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58899999999999999999999999999999999744 33342
Q ss_pred e--ccEEcCCCCcccccccccCCeEEEEEE
Q 009518 349 F--AGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 349 ~--~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
. .+.||++++||.++||.++++|.|+.+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 2 248999999999999999999999864
No 205
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.05 E-value=2.2e-06 Score=66.61 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=58.8
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcc---c--ccCCccccccccccccceee
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 146 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~---L--~d~~~l~~y~i~~~s~i~l~ 146 (533)
+.|.|.|++.+| ++.+++++++|+.+|+++|++..+++++.|.+.+.... | .++.+|+++|+++|+.+++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 347788888776 66788999999999999999999999999888755433 3 47889999999999999874
No 206
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.01 E-value=1.6e-05 Score=62.88 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=46.7
Q ss_pred EcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcC--CCCCcccccc
Q 009518 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNI 61 (533)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~--~~~tl~~y~i 61 (533)
.-..+..+.+.+.+++||..+|++|++++|||+.+|+|+|.|+.|. .++.-..|.-
T Consensus 19 ~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~ 76 (94)
T 4efo_A 19 SLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 76 (94)
T ss_dssp ETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCC
T ss_pred EcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCC
Confidence 3456789999999999999999999999999999999999998764 4444445543
No 207
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.99 E-value=2.4e-05 Score=62.74 Aligned_cols=71 Identities=13% Similarity=0.287 Sum_probs=64.7
Q ss_pred CeeEEEEcCCCC-eEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEE
Q 009518 228 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (533)
Q Consensus 228 ~~~i~V~~~~g~-~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~ 298 (533)
.+.+.|+..+|. .+.+.|++.++.+.|....+++.|+++...+|.|+|+.+.++.|.++.++.+||+|.+.
T Consensus 25 ~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 25 QLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred eEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 355667777884 89999999999999999999999999999999999999999999999999999999764
No 208
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.98 E-value=0.00018 Score=73.09 Aligned_cols=134 Identities=24% Similarity=0.354 Sum_probs=106.2
Q ss_pred CCeEEEEeecCccHHHHHHHhhhhcC----CCCCCeeEEe------cCccccCCccccccccCCCceEEEEEeecCCcee
Q 009518 238 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 307 (533)
Q Consensus 238 g~~i~~~v~~~~tV~~lK~~I~~~~g----ip~~~q~L~~------~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~~i 307 (533)
+-+-++..+++.||.++-..|.++.+ .+.+++-|-. +|.=|+.++||..|++++++.++.-.+ .+.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~---~~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKK---QRPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEEC---EEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCc---eeEE
Confidence 55667889999999999999988875 2566777776 333488999999999999999876543 3578
Q ss_pred EEEccCCceEEEEeccCccHHHHHHHhccccCCCCCc-eeEEec---------cEEcCCCCcccccccccCCeEEEE
Q 009518 308 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---------GKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 308 ~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~-q~L~~~---------g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
-|..++|...++.+++++|+.|+-..|+++.|+.... ..|.+. -.+|+.++++.+.+.....+++++
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~fr 165 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLR 165 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEE
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEE
Confidence 8899999999999999999999999999999996543 346553 267888889988877666666665
No 209
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.95 E-value=3.7e-05 Score=71.41 Aligned_cols=94 Identities=14% Similarity=0.255 Sum_probs=79.7
Q ss_pred ecCCeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCC
Q 009518 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (533)
Q Consensus 225 ~~~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~ 304 (533)
+...+.|.|.. +|+.+.+.+++++....|+...+++.|+|+++++|.|+|+.+.++.|..+..+.++|+|.+..+..++
T Consensus 18 ~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg 96 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (209)
T ss_dssp CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTC
T ss_pred CCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhcccccc
Confidence 33445666776 77899999999999999999999999999999999999999999999999999999999998887765
Q ss_pred ceeEEEccCCceEEEE
Q 009518 305 MQIFVKTLTGKTITLE 320 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~ 320 (533)
. .++.+.+|=.+...
T Consensus 97 ~-t~~~~~sGl~~~vl 111 (209)
T 3uf8_A 97 S-TVVTTESGLKYEDL 111 (209)
T ss_dssp C-CCEECTTSCEEEEE
T ss_pred c-cccCCCCceEEEEE
Confidence 4 45666777555433
No 210
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.90 E-value=2.8e-05 Score=61.55 Aligned_cols=44 Identities=18% Similarity=0.240 Sum_probs=40.7
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecC
Q 009518 464 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 507 (533)
Q Consensus 464 ~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~ 507 (533)
..+..+.+.+.+++||..+|++|++.+|||+++|+|+|+|+.|.
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 45678999999999999999999999999999999999998765
No 211
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.90 E-value=5.4e-05 Score=59.52 Aligned_cols=72 Identities=14% Similarity=0.271 Sum_probs=66.2
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
..+.|.|+ ..|....+.+..++....|+...+++.|++++..++.|+|..+.++.|.+++++++|++|.+.+
T Consensus 20 ~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 20 RLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 34667777 4688999999999999999999999999999999999999999999999999999999998765
No 212
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.89 E-value=7.4e-05 Score=55.93 Aligned_cols=70 Identities=16% Similarity=0.316 Sum_probs=62.7
Q ss_pred eeeeeeccCceEEeeecCCchHHHHHHHhhhhcCCCCC-CeEEEeCCeecCCCCCcccccCCCCCEEEEEE
Q 009518 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (533)
Q Consensus 154 ~i~v~~~~g~~~~i~v~~~dtV~~lK~~i~~~~gip~~-~q~L~~~g~~L~d~~tl~~y~I~~~s~i~l~~ 223 (533)
.+.++......+.+.|.++.+|.+|-+.-+.+.|||++ ..+|.|.|..|+.+.++++|++.+|+.|.+++
T Consensus 11 ~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 11 TLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 34455555677899999999999999999999999999 89999999999999999999999999998864
No 213
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.88 E-value=1.3e-06 Score=86.53 Aligned_cols=84 Identities=13% Similarity=0.334 Sum_probs=2.6
Q ss_pred ecCCeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCC
Q 009518 225 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (533)
Q Consensus 225 ~~~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~ 304 (533)
+...+.+.|+. +|+.+.+.|+++++++.|+...+++.|++++.++|.|+|+.+.++.|.+++++.+||+|+++.++.++
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~ 96 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 96 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCch
Confidence 44456677776 68899999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ceeEE
Q 009518 305 MQIFV 309 (533)
Q Consensus 305 ~~i~v 309 (533)
|..|.
T Consensus 97 ~~~Yl 101 (360)
T 3ix6_A 97 MRTYL 101 (360)
T ss_dssp CHHHH
T ss_pred HHHHH
Confidence 75443
No 214
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.63 E-value=6.8e-05 Score=62.98 Aligned_cols=71 Identities=27% Similarity=0.393 Sum_probs=60.1
Q ss_pred eEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCc-------------------------------------ceeEe
Q 009518 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 424 (533)
Q Consensus 382 ~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~-------------------------------------~q~l~ 424 (533)
.+.|++++|...++.|+++.||.+++..|+.+.||+.. +|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 68999999999999999999999999999999999966 33333
Q ss_pred e--cCccccCCccccccccccCCeEEEEEE
Q 009518 425 F--AGKQLEDGRTLADYNIQKESTLHLVLR 452 (533)
Q Consensus 425 ~--~g~~l~d~~~L~~~~i~~~~~l~l~~~ 452 (533)
- ..+-|+++.+|.++||..++++.|..+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 124578899999999999999888754
No 215
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.61 E-value=0.0002 Score=56.36 Aligned_cols=70 Identities=14% Similarity=0.304 Sum_probs=64.3
Q ss_pred eeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEE
Q 009518 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (533)
Q Consensus 229 ~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~ 299 (533)
+.+.|+ .+|..+.|.++.++..+.|....+++.|++++.-+|.|+|..+.++.|.++.++.+||+|..+.
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 555666 4689999999999999999999999999999999999999999999999999999999997653
No 216
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.60 E-value=8.9e-06 Score=83.32 Aligned_cols=76 Identities=12% Similarity=0.320 Sum_probs=0.0
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.+.|.|+. +|....++|.++++...|+...+++.|+++.+++++|+|+.|.++.|.+++++++|++|++....+||
T Consensus 30 ~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg 105 (389)
T 4da1_A 30 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGG 105 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred cEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccc
Confidence 34566666 67778899999999999999999999999999999999999999999999999999999999999999
No 217
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.55 E-value=0.00025 Score=55.24 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=68.5
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
..|.+.|-..+|+...++|.|+.++.++-+..+.++|+++++-.|.|+++.|+-+-++.-.|+.+|+.|.|+..
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999998754
No 218
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.29 E-value=3.7e-05 Score=78.68 Aligned_cols=79 Identities=11% Similarity=0.342 Sum_probs=0.0
Q ss_pred eeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEeecCCceeE
Q 009518 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 308 (533)
Q Consensus 229 ~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~~~~i~ 308 (533)
+.+.|+. +|..+.+.|++.++...|+...+++.|+++.+++|.|+|+.+.++.|.++.++.+||+|.++....++...+
T Consensus 31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n~~ 109 (389)
T 4da1_A 31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGENLY 109 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccccc
Confidence 4555665 678899999999999999999999999999999999999999999999999999999999988876654433
No 219
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.03 E-value=0.0016 Score=50.02 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=52.8
Q ss_pred CCCCEEEEEecCCCcHHHHHHHHhhhcCCCCC-----cEEEEEcCeecCCCCcccccCCCCCCEEEE
Q 009518 464 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 464 ~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~-----~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l 525 (533)
..|+.+.+.++...||..|+..+.+..+++.. +.++.-.|..|.++++|+||+|.+||.|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 47899999999999999999999999988652 234445677889999999999999999875
No 220
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.89 E-value=0.0025 Score=48.89 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=54.6
Q ss_pred ccCCceEEEEeccCccHHHHHHHhccccCCCC-----CceeEEeccEEcCCCCcccccccccCCeEEE
Q 009518 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 373 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~-----~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l 373 (533)
-+.|+++.+.+...-|+..+++.+.+-++++. ..-+..-.+..|.++++|+||+|.+||.|.+
T Consensus 13 ~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 13 HYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred ccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 37999999999999999999999999888754 2334555799999999999999999999875
No 221
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.81 E-value=0.0054 Score=47.77 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=61.2
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeecC---CCCcccccCCCCCCEEEEEE
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~---d~~tL~~~~I~~~~~l~l~~ 527 (533)
+...|.|+..+|+...-....++||.+|...|.. .+.++..+.|. |-.+.+. .+.||.++|+.+.++|.|.-
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 4467888999999888899999999999999998 67888999998 4467783 46799999999999988764
No 222
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.21 E-value=0.02 Score=44.48 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=58.8
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEE--ecCccc---ccCCccccccccccccceeee
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L---~d~~~l~~y~i~~~s~i~l~~ 147 (533)
..|-|+..+|+.+.-....++||.+|.+-|.. .+.++....|+ |-.+.+ +.+++|.+.|+.+++++.+-.
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 46778889999999999999999999999987 56777788888 446777 357899999999999888753
No 223
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.52 E-value=0.052 Score=44.34 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=62.1
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeecC--C-CCcccccCCCCCCEEEEEEe
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--d-~~tL~~~~I~~~~~l~l~~~ 528 (533)
+...|.|+..+|....-....++||.+|...|....+.+...+.|. |-.+.+. | ++||.|+|+.+.++|.+...
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 3567889999999999999999999999999999988887888886 4566675 3 67999999999888877653
No 224
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.30 E-value=0.098 Score=42.69 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=60.3
Q ss_pred CeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEe--cCcccc---CCccccccccCCCceEEEEEe
Q 009518 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE---DGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 228 ~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~---d~~tl~~~~i~~~~ti~l~~~ 300 (533)
...|.|+.++|.++.-....++||++|.+.|....+.+...+.|+. -.+.+. .++||.+.|+.+..++++.+.
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 3567889999999999999999999999999998777666777774 455564 489999999999988877654
No 225
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.09 E-value=0.055 Score=45.32 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=60.9
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeec--CC-CCcccccCCCCCCEEEEEE
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L--~d-~~tL~~~~I~~~~~l~l~~ 527 (533)
+...|.||..+|....-....++||.+|...|... +.++..+.|+ |-.+.| +| +.||.++|+.+..+|.+.-
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 45678899999998999999999999999999987 8888889887 457778 33 6899999999988777653
No 226
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=95.07 E-value=0.18 Score=37.38 Aligned_cols=67 Identities=24% Similarity=0.337 Sum_probs=53.4
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.|+|.|....+ ...++++...||++|...+ ++++....+..+|..+..+. -+++||.|.+.-...||
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 48888887653 3567888889999999886 56777777888999987665 46779999999888887
No 227
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.97 E-value=0.036 Score=42.03 Aligned_cols=65 Identities=12% Similarity=0.218 Sum_probs=56.9
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc---CeecCCCCcccccCCCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQK 519 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~---g~~L~d~~tL~~~~I~~ 519 (533)
.++++.|.....+...+.|+|..+.++|-..|+++..+.|++-.|... +.+|+=+++|.||||.+
T Consensus 9 ~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 9 KTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp SCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred cEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 456677777777789999999999999999999999999999999865 44788899999999987
No 228
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=94.86 E-value=0.093 Score=43.89 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=60.1
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEE--ecCccc--c-cCCccccccccccccceeee
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--E-DGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~G~~L--~-d~~~l~~y~i~~~s~i~l~~ 147 (533)
....|-||..+|+.+.-.+..++||.+|..-|... +.++....|+ |-.+.| + .+.+|.+.++.+.+++.+..
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 34678889999999999999999999999999876 7777777887 557888 3 37999999999888887753
No 229
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.82 E-value=0.093 Score=42.52 Aligned_cols=64 Identities=34% Similarity=0.397 Sum_probs=45.4
Q ss_pred CCceEEEEeccCccHHHHHHHhcc--ccCCCCC------ceeEEe----ccEEcCCC-------------Cccccccccc
Q 009518 313 TGKTITLEVESSDTIDNVKAKIQD--KEGIPPD------QQRLIF----AGKQLEDG-------------RTLADYNIQK 367 (533)
Q Consensus 313 ~g~~~~~~v~~~~ti~~lK~~i~~--~~~ip~~------~q~L~~----~g~~L~~~-------------~tl~~y~i~~ 367 (533)
++..+.+.|-..|||.++|+||-+ -.|.|.+ ...|-+ .|+.|.|. -||++|+|++
T Consensus 22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 356688889999999999999985 2355554 334555 35677762 3789999999
Q ss_pred CCeEEEEEE
Q 009518 368 ESTLHLVLR 376 (533)
Q Consensus 368 ~~~l~l~~~ 376 (533)
|+++.|.++
T Consensus 102 gatl~l~~~ 110 (111)
T 4e71_A 102 GATLILSKV 110 (111)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999999864
No 230
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.14 E-value=0.15 Score=42.87 Aligned_cols=65 Identities=31% Similarity=0.496 Sum_probs=47.0
Q ss_pred CceEEEEeccCccHHHHHHHhccc--cCCCCC------ceeEEe----ccE-EcCCC-------------Cccccccccc
Q 009518 314 GKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIF----AGK-QLEDG-------------RTLADYNIQK 367 (533)
Q Consensus 314 g~~~~~~v~~~~ti~~lK~~i~~~--~~ip~~------~q~L~~----~g~-~L~~~-------------~tl~~y~i~~ 367 (533)
...+.+.|-..|||.++|+||.+. -|+|.+ ...|-+ .|+ .|.|. -||+.|+|++
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 467889999999999999999863 345554 223433 244 36653 3899999999
Q ss_pred CCeEEEEEEec
Q 009518 368 ESTLHLVLRLR 378 (533)
Q Consensus 368 ~~~l~l~~~~~ 378 (533)
|+++.|.++..
T Consensus 120 ga~l~l~~~~~ 130 (138)
T 2r2o_A 120 GATVALVPCLT 130 (138)
T ss_dssp TCEEEEEEC--
T ss_pred CCEEEEEECCC
Confidence 99999997754
No 231
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=93.73 E-value=0.32 Score=39.38 Aligned_cols=63 Identities=37% Similarity=0.438 Sum_probs=44.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhc--CCCC------CcEEEEE----cCeecCCC-------------CcccccCCCCC
Q 009518 466 GKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGKQLEDG-------------RTLADYNIQKE 520 (533)
Q Consensus 466 g~~~~~~v~~~~tV~~lK~~I~~~~--gip~------~~q~L~~----~g~~L~d~-------------~tL~~~~I~~~ 520 (533)
+..+.++|-..+||.++|++|-+.. |.|. +...|-+ .|+.|.|. .||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4457788889999999999998763 5554 4455655 24566552 48999999999
Q ss_pred CEEEEEEe
Q 009518 521 STLHLVLR 528 (533)
Q Consensus 521 ~~l~l~~~ 528 (533)
+++-|.-|
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988764
No 232
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=93.54 E-value=0.38 Score=36.36 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=52.7
Q ss_pred eEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEE
Q 009518 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (533)
Q Consensus 240 ~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~ 298 (533)
.+.-.++-..++..||..++.+.|++.+.+.|...+..|+++++|.+.+++-+..+.+.
T Consensus 4 vi~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 4 CVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 34566777889999999999999999999999999888999999999999998888764
No 233
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.37 E-value=0.27 Score=40.05 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=58.7
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE--EcCeecC--CCCcccccCCCCCCEEEEEE
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~--~~g~~L~--d~~tL~~~~I~~~~~l~l~~ 527 (533)
..+|.|+..+|+...-....++||.+|...|... +..+..+.|. |-.+.|. .+.||+++|+.+.++|.|.-
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 4678889999998888999999999999999975 5567778886 4466775 46899999999998887754
No 234
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=92.99 E-value=0.22 Score=41.77 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=56.0
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhc-CCCCCcEEEE--EcCeecCC-CCcccccCCCCCCE
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKEST 522 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~-gip~~~q~L~--~~g~~L~d-~~tL~~~~I~~~~~ 522 (533)
+...|.|+..+|....-....++||.+|...|.... +.+...+.|. |-.+.++| +.||.|+|+.+...
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav 122 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI 122 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence 457889999999999999999999999999999863 4566778886 45778875 68999999998543
No 235
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=92.83 E-value=0.33 Score=44.81 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=53.2
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCC-cEEEE--E-cCe--ecCC-CCcccccCCCCCCEEEEEEecCCC
Q 009518 468 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-AGK--QLED-GRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~--~-~g~--~L~d-~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..+..++..+||.+|+..+....+||++ +.||- + .++ .|+| ++||.++++.++..|.+-+|...|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3567889999999999999999999997 67774 2 232 5665 579999999999999999997666
No 236
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=92.76 E-value=0.23 Score=37.31 Aligned_cols=66 Identities=14% Similarity=0.350 Sum_probs=50.5
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
|+|.|+........+++++..||++|-.. .|+|++.-...-||+.+..+. +.+|+.|.+.--..||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 67777766445567899999999998765 689998887788999887655 2348889887666666
No 237
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=92.67 E-value=0.42 Score=36.13 Aligned_cols=60 Identities=18% Similarity=0.372 Sum_probs=53.6
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009518 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 470 ~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l 529 (533)
.-.++-++++..||..++.+.|++.+.-.+...+..|+++++|.|.+|+-.-++.+.+-.
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 345677889999999999999999999999999999999999999999988888887754
No 238
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=92.47 E-value=0.55 Score=38.13 Aligned_cols=69 Identities=17% Similarity=0.220 Sum_probs=55.1
Q ss_pred eeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEe--cCcccc--CCccccccccCCCceEEEE
Q 009518 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE--DGRTLADYNIQKESTLHLV 298 (533)
Q Consensus 229 ~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~--d~~tl~~~~i~~~~ti~l~ 298 (533)
..|.|+.++|+++.-....++||++|...|... +.....+.|+. =.+.+. .+.||.+.|+.+..++++.
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 467788899999999999999999999999865 44455677763 355664 5899999999998888654
No 239
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.40 E-value=0.29 Score=45.71 Aligned_cols=64 Identities=20% Similarity=0.310 Sum_probs=53.1
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCC-cEEEEE-c----CeecCC-CCcccccCCCCCCEEEEEEecCCC
Q 009518 469 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 469 ~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~-~----g~~L~d-~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
++..++..+||.+|+..+....+||++ +.||.. . ...|.| +.||.++++.++..|.+-+|..-|
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 556789999999999999999999997 578754 3 235665 589999999999999999986555
No 240
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.74 E-value=0.29 Score=37.15 Aligned_cols=67 Identities=13% Similarity=0.213 Sum_probs=56.7
Q ss_pred eeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEe---ccEEcCCCCcccccccccCCeEEEEE
Q 009518 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLVL 375 (533)
Q Consensus 306 ~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~---~g~~L~~~~tl~~y~i~~~~~l~l~~ 375 (533)
.+.|.....+...+.|+|..+..++--.||+|-+..|+...|.. .+..|+-+++|.||+|+. |+...
T Consensus 12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE---Lya~d 81 (91)
T 2daj_A 12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE---LYAMD 81 (91)
T ss_dssp EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE---EEEEE
T ss_pred EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh---hheec
Confidence 45566677777889999999999999999999999999888876 478899999999999985 55543
No 241
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.73 E-value=0.56 Score=38.33 Aligned_cols=64 Identities=30% Similarity=0.444 Sum_probs=46.6
Q ss_pred CceEEEEeccCccHHHHHHHhcc--ccCCCCC------ceeEEe----ccE-EcCC-------------CCccccccccc
Q 009518 314 GKTITLEVESSDTIDNVKAKIQD--KEGIPPD------QQRLIF----AGK-QLED-------------GRTLADYNIQK 367 (533)
Q Consensus 314 g~~~~~~v~~~~ti~~lK~~i~~--~~~ip~~------~q~L~~----~g~-~L~~-------------~~tl~~y~i~~ 367 (533)
...+.+.|-..|||.++|+||-+ -.|.|.+ ...|-+ .|+ .|.| =-||++|+|++
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 45688889999999999999985 2355554 334555 133 3554 24789999999
Q ss_pred CCeEEEEEEe
Q 009518 368 ESTLHLVLRL 377 (533)
Q Consensus 368 ~~~l~l~~~~ 377 (533)
|+++.|.++.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998763
No 242
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=91.17 E-value=1.4 Score=36.44 Aligned_cols=64 Identities=28% Similarity=0.397 Sum_probs=47.4
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhc--CCCC------CcEEEEE-c---Ce-ecCCC-------------CcccccCCC
Q 009518 465 TGKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF-A---GK-QLEDG-------------RTLADYNIQ 518 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~lK~~I~~~~--gip~------~~q~L~~-~---g~-~L~d~-------------~tL~~~~I~ 518 (533)
.+....++|-..+||.++|++|-+.. ++|. ++..|-+ . |+ .|.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 34457788889999999999998763 5553 5666765 2 33 36542 589999999
Q ss_pred CCCEEEEEEe
Q 009518 519 KESTLHLVLR 528 (533)
Q Consensus 519 ~~~~l~l~~~ 528 (533)
+|+++-|..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999998765
No 243
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=91.08 E-value=0.6 Score=36.20 Aligned_cols=68 Identities=10% Similarity=0.142 Sum_probs=47.5
Q ss_pred CCeeeEEEeCCCCEEEEEecCC-CcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 455 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~-~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..|+|.|+. ..++++.. .||++|...+ ++++....+..||..+..+ ...+.-+++||.|.+.-...||
T Consensus 19 ~~M~I~vNG-----e~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 19 GRHMLQLNG-----KDVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ---CEEETT-----EEECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred cceEEEECC-----EEEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 467776653 24566776 8999999886 5677777778889887643 3445567889999999888887
No 244
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=90.48 E-value=0.48 Score=43.70 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=52.1
Q ss_pred eEEEEeccCccHHHHHHHhccccCCCCC-ceeEEe-----ccEEcCC-CCcccccccccCCeEEEEEEec
Q 009518 316 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-----AGKQLED-GRTLADYNIQKESTLHLVLRLR 378 (533)
Q Consensus 316 ~~~~~v~~~~ti~~lK~~i~~~~~ip~~-~q~L~~-----~g~~L~~-~~tl~~y~i~~~~~l~l~~~~~ 378 (533)
.++..++..+||.+++++++..++||++ ..||-. ....|++ +.||.+++|.++..|.+-.+..
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~ 210 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNE 210 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecC
Confidence 4678889999999999999999999997 688653 2355666 5799999999999999886643
No 245
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=90.47 E-value=0.64 Score=38.90 Aligned_cols=67 Identities=19% Similarity=0.352 Sum_probs=52.7
Q ss_pred eeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhc-CCCCCCeeEE--ecCcccc-CCccccccccCCCceE
Q 009518 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLE-DGRTLADYNIQKESTL 295 (533)
Q Consensus 229 ~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~-gip~~~q~L~--~~g~~L~-d~~tl~~~~i~~~~ti 295 (533)
..|.|+..+|.++.-....++||++|...|.... +.+...+.|+ |-.+.++ ++.||.+.|+.+...+
T Consensus 53 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 53 TNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 4677888999999999999999999999999864 3444556776 3466675 4799999999985544
No 246
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=90.46 E-value=1.1 Score=36.94 Aligned_cols=67 Identities=25% Similarity=0.413 Sum_probs=48.8
Q ss_pred EcCCCcEEEEEecCcccHHHHHHHHHhh--hCCCC------ccceEEE----ccEE-cCC--------C-----CCcccc
Q 009518 6 KTLTGKTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIF----AGKQ-LED--------G-----RTLADY 59 (533)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~ik~ki~~~--~~i~~------~~q~l~~----~g~~-L~~--------~-----~tl~~y 59 (533)
...++..+++.|-..|||..+|+||-+. .+.|. +...|-| .|+. |.| + .||++|
T Consensus 12 ~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY 91 (127)
T 3h6n_A 12 QGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHY 91 (127)
T ss_dssp ETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTT
T ss_pred cCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEecccccc
Confidence 4445678999999999999999999664 45554 3455555 3333 654 1 589999
Q ss_pred ccccccccceEEE
Q 009518 60 NIQKESTLHLVLR 72 (533)
Q Consensus 60 ~i~~~sti~l~~~ 72 (533)
+|.+++++-|+.+
T Consensus 92 ~V~dgatv~l~~~ 104 (127)
T 3h6n_A 92 KIPEGASLAMSLI 104 (127)
T ss_dssp TCCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 9999999988754
No 247
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=90.28 E-value=1.9 Score=34.11 Aligned_cols=73 Identities=14% Similarity=0.322 Sum_probs=50.1
Q ss_pred CCeeeEEEeCC------C-CEEEEEecCCCcHHHHHHHHhhhcC-C----------CCCcEEEEEcCeecCCCCcccccC
Q 009518 455 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN 516 (533)
Q Consensus 455 ~~m~i~v~~~~------g-~~~~~~v~~~~tV~~lK~~I~~~~g-i----------p~~~q~L~~~g~~L~d~~tL~~~~ 516 (533)
..|+|.|+... | ....+++....||.+|...+..... + ......+.-||+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 56788887632 4 4677888888999999999987641 1 1234566778887764 456
Q ss_pred CCCCCEEEEEEecCCC
Q 009518 517 IQKESTLHLVLRLRGG 532 (533)
Q Consensus 517 I~~~~~l~l~~~l~GG 532 (533)
+++|+.|.+.-...||
T Consensus 83 L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 83 LKDGDVVGVFPPVSGG 98 (98)
T ss_dssp CCTTCEEEEESCC---
T ss_pred CCCCCEEEEECCCCCC
Confidence 7789999998888887
No 248
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=90.06 E-value=0.61 Score=43.46 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=52.3
Q ss_pred eEEEEeccCccHHHHHHHhccccCCCCC-ceeEEe-----ccEEcCC-CCcccccccccCCeEEEEEEec
Q 009518 316 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-----AGKQLED-GRTLADYNIQKESTLHLVLRLR 378 (533)
Q Consensus 316 ~~~~~v~~~~ti~~lK~~i~~~~~ip~~-~q~L~~-----~g~~L~~-~~tl~~y~i~~~~~l~l~~~~~ 378 (533)
.++..++..+||.+++++++..++||++ .-||-. ....|++ +.||.++++.++..|.+-.+..
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 4567789999999999999999999997 688765 2356665 5999999999999998876644
No 249
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=89.56 E-value=1.3 Score=32.98 Aligned_cols=58 Identities=14% Similarity=0.370 Sum_probs=41.8
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCC--CcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 470 TLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~lK~~I~~~~gip~--~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.+++ ...||++|...+....++.. ..-.+.-||+.+.+ .+.-+++|+.|.+.-+..||
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 3566 67899999999987543322 34566678877543 24457789999999999998
No 250
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=88.91 E-value=1.1 Score=33.56 Aligned_cols=66 Identities=14% Similarity=0.350 Sum_probs=48.7
Q ss_pred eEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
|+|+|+..+.....++++...||+++-++ .|+|++.-.+..||+....+. +.+|+.+.+.---.||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 67888877555667899999999997654 799998887888998886554 2347777776544444
No 251
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=88.77 E-value=1.7 Score=36.41 Aligned_cols=63 Identities=32% Similarity=0.488 Sum_probs=46.3
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhc--CCCC------CcEEEEE----cCe-ecCCC-------------CcccccCCCCC
Q 009518 467 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 520 (533)
Q Consensus 467 ~~~~~~v~~~~tV~~lK~~I~~~~--gip~------~~q~L~~----~g~-~L~d~-------------~tL~~~~I~~~ 520 (533)
..+.++|-..+||.++|++|-+.. |+|. ++.-|-+ .|+ .|.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 457788889999999999998774 5544 3344544 243 36553 38999999999
Q ss_pred CEEEEEEec
Q 009518 521 STLHLVLRL 529 (533)
Q Consensus 521 ~~l~l~~~l 529 (533)
+++-|.-|.
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999988764
No 252
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=88.58 E-value=0.97 Score=36.92 Aligned_cols=64 Identities=31% Similarity=0.471 Sum_probs=45.8
Q ss_pred CcEEEEEecCCCcHHHHHHHhhccc--CCCCcc------eeEeec-Cc----cccCC-------------cccccccccc
Q 009518 390 GKTITLEVESSDTIDNVKAKIQDKE--GIPPDQ------QRLIFA-GK----QLEDG-------------RTLADYNIQK 443 (533)
Q Consensus 390 g~~~~~~v~~~~Tv~~lK~~I~~~~--~vp~~~------q~l~~~-g~----~l~d~-------------~~L~~~~i~~ 443 (533)
...+.++|-.+|||.++|++|-+.. +.|..+ ..|-|. |. .|.|. .||++|+++.
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 3457888999999999999987742 455442 335563 21 24442 4899999999
Q ss_pred CCeEEEEEEe
Q 009518 444 ESTLHLVLRL 453 (533)
Q Consensus 444 ~~~l~l~~~~ 453 (533)
|+++.|+++.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998753
No 253
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=87.98 E-value=1.9 Score=35.44 Aligned_cols=61 Identities=31% Similarity=0.425 Sum_probs=43.9
Q ss_pred ceEEEEeccCccHHHHHHHhccc----cCCCCC----ceeEEe----ccEEcCC--------------CCcccccccccC
Q 009518 315 KTITLEVESSDTIDNVKAKIQDK----EGIPPD----QQRLIF----AGKQLED--------------GRTLADYNIQKE 368 (533)
Q Consensus 315 ~~~~~~v~~~~ti~~lK~~i~~~----~~ip~~----~q~L~~----~g~~L~~--------------~~tl~~y~i~~~ 368 (533)
..+.+.|-..|||.++|++|-+. .|.|.+ ...|-+ .+..|.| =-||+.|+|++|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46888899999999999998852 477664 333444 1334443 136789999999
Q ss_pred CeEEEEE
Q 009518 369 STLHLVL 375 (533)
Q Consensus 369 ~~l~l~~ 375 (533)
+++-+..
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9998864
No 254
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=87.66 E-value=0.82 Score=33.26 Aligned_cols=57 Identities=12% Similarity=0.212 Sum_probs=42.6
Q ss_pred EEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 471 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 471 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
+++....||++|...+ ++++....+..+|..+..+ ...+.-+++|+.|.+.-...||
T Consensus 10 ~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 10 MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 4567788999999887 5677777778888887642 2234456779999998888887
No 255
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=86.64 E-value=1.4 Score=33.74 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=41.0
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcC
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 503 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g 503 (533)
..|.|.|... -++.+.|+++.+..+|..+|.++.++|++...|.|..
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 3466777765 4899999999999999999999999999999999965
No 256
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=85.87 E-value=1.9 Score=45.84 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=56.1
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCc-eeEEec-----cEEcCCCCcccccccccCCeEEEEEE
Q 009518 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA-----GKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~-q~L~~~-----g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
+.+-|..++| ++.+.+++++|+.++-..|+..+|+.... ..|.|. -.||+.++++.+.+++.+..+.|.++
T Consensus 5 i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 5 MNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 4566777888 78899999999999999999999996543 447763 26899999999987777666555543
No 257
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=85.16 E-value=2.3 Score=40.93 Aligned_cols=70 Identities=14% Similarity=0.238 Sum_probs=54.3
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCce-eEEec-----cEEcCCCCcccccccccCCeEEEEE
Q 009518 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-----GKQLEDGRTLADYNIQKESTLHLVL 375 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q-~L~~~-----g~~L~~~~tl~~y~i~~~~~l~l~~ 375 (533)
+.+-|..++| ++.+.+++++|+.|+-..|+++.|+..... .|.+. ..+|+.++++.+.+++.+....+.+
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 3456777888 788999999999999999999999966543 36652 3689999999998776666555544
No 258
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=84.39 E-value=2.7 Score=40.89 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=55.7
Q ss_pred CceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCce-eEEec----cEEcCCCCcccccccccCCeEEEEE
Q 009518 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA----GKQLEDGRTLADYNIQKESTLHLVL 375 (533)
Q Consensus 304 ~~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q-~L~~~----g~~L~~~~tl~~y~i~~~~~l~l~~ 375 (533)
.+.+-|..++| ++.+.+++++|+.|+-..|+++.|+..... .|.|. ..+|+.++++.+...+.+....+.+
T Consensus 22 ~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~f 97 (314)
T 1h4r_A 22 TFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHF 97 (314)
T ss_dssp EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEE
T ss_pred eeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEE
Confidence 35566778899 899999999999999999999999975443 36662 4689999999998776666554443
No 259
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=84.23 E-value=1.7 Score=33.19 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=39.7
Q ss_pred eeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEecc
Q 009518 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 351 (533)
Q Consensus 306 ~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g 351 (533)
.+.||..-.-|+.+.|.++.+..++.++|.+++++|++.-.|.|+.
T Consensus 5 ~~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 5 AYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp CEEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred cEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 3456654457999999999999999999999999999999999964
No 260
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=84.04 E-value=7.4 Score=28.42 Aligned_cols=63 Identities=24% Similarity=0.299 Sum_probs=44.3
Q ss_pred CceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEEEE
Q 009518 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 304 ~~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
.|.|.|....++ ..+++....|+.++.+.+ ++++..-....+|..++.+. -++++|.+.+.+.
T Consensus 4 ~m~i~vNg~~~~-~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 4 GMKFTVITDDGK-KILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRV 66 (70)
T ss_dssp CEEEEEEETTEE-EEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEEC
T ss_pred eEEEEEeCccCc-eeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEec
Confidence 355655543322 355677789999999876 45666666777888877654 6889999998854
No 261
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=83.25 E-value=5.8 Score=32.60 Aligned_cols=61 Identities=33% Similarity=0.493 Sum_probs=42.9
Q ss_pred cEEEEEecCCCcHHHHHHHhhcc----cCCCCcc----eeEeec-Cc---cccC----------C----ccccccccccC
Q 009518 391 KTITLEVESSDTIDNVKAKIQDK----EGIPPDQ----QRLIFA-GK---QLED----------G----RTLADYNIQKE 444 (533)
Q Consensus 391 ~~~~~~v~~~~Tv~~lK~~I~~~----~~vp~~~----q~l~~~-g~---~l~d----------~----~~L~~~~i~~~ 444 (533)
..+.++|-.+|||.++|++|-+. .+.|..+ ..|-|. |. .|.| + .||+.|+++.|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46888999999999999998763 3666643 234452 21 2222 1 47899999999
Q ss_pred CeEEEEE
Q 009518 445 STLHLVL 451 (533)
Q Consensus 445 ~~l~l~~ 451 (533)
+++.|+.
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9998864
No 262
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=83.17 E-value=4.7 Score=30.95 Aligned_cols=61 Identities=16% Similarity=0.287 Sum_probs=45.8
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhcC-CC----------CCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 467 KTITLEVESSDTIDNVKAKIQDKEG-IP----------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 467 ~~~~~~v~~~~tV~~lK~~I~~~~g-ip----------~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
....++++...||.+|...+..... +. .....+.-||+....+ .-+++|+.|.+.-+..||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~-----~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG-----EATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT-----SBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC-----cccCCCCEEEEECCCCCC
Confidence 4567888888999999999988752 10 0124677788887753 446779999999999988
No 263
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=82.79 E-value=6.7 Score=30.34 Aligned_cols=65 Identities=14% Similarity=0.203 Sum_probs=44.0
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhcCC------C-------CCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 466 GKTITLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 466 g~~~~~~v~~~~tV~~lK~~I~~~~gi------p-------~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
|....+++ ...||.+|...+..++.- . .....+.-||+...+..-+ +.-+++|+.|.+.-+..||
T Consensus 16 g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 16 GGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp TTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEECCTTC
T ss_pred CCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEECCCCCC
Confidence 43334664 567999999999987520 0 1135667788877642222 3457889999999999998
No 264
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=82.59 E-value=2.9 Score=31.48 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=42.5
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcC-----CCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 468 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~~g-----ip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
...++ ....||.+|...+..... ++.....+..||+.... +.-+++|+.|.+.-+..||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 34455 567899999999986632 23334567788887754 3457789999999888887
No 265
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=81.44 E-value=2.3 Score=31.62 Aligned_cols=56 Identities=11% Similarity=0.184 Sum_probs=43.2
Q ss_pred EEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 471 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 471 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.++ ...||++|... .++++...-+..+|..+..+ ..++.-+++||.|.+.-...||
T Consensus 10 ~e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 10 REV-QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp ECC-CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCC
T ss_pred EEc-CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCC
Confidence 445 67899999875 47888888888899887643 3455567789999999988888
No 266
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=80.07 E-value=5.3 Score=41.97 Aligned_cols=65 Identities=31% Similarity=0.478 Sum_probs=46.6
Q ss_pred CceEEEEeccCccHHHHHHHhcc--ccCCCCC------ceeEEe----ccE-EcCCC-------------Cccccccccc
Q 009518 314 GKTITLEVESSDTIDNVKAKIQD--KEGIPPD------QQRLIF----AGK-QLEDG-------------RTLADYNIQK 367 (533)
Q Consensus 314 g~~~~~~v~~~~ti~~lK~~i~~--~~~ip~~------~q~L~~----~g~-~L~~~-------------~tl~~y~i~~ 367 (533)
...+.+.|-..|||.++|++|-+ -.|.|.+ ...|-+ .|+ .|.|. -||++|+|++
T Consensus 273 ~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 352 (644)
T 3hm6_X 273 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 352 (644)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCC
Confidence 35688899999999999999985 2355544 334554 233 35653 3899999999
Q ss_pred CCeEEEEEEec
Q 009518 368 ESTLHLVLRLR 378 (533)
Q Consensus 368 ~~~l~l~~~~~ 378 (533)
|+++.|.++..
T Consensus 353 ga~v~L~p~~~ 363 (644)
T 3hm6_X 353 GATVALVPCLT 363 (644)
T ss_dssp TCEEEEEEC--
T ss_pred CcEEEEEeccc
Confidence 99999987653
No 267
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=79.66 E-value=2.9 Score=31.16 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=42.9
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCCcE--EEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 468 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~~gip~~~q--~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
...+++....||++|...+..... .+... .+..||+....+ .-+++|+.|.+.-...||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 455667778899999999987642 01223 677788888754 456779999998888887
No 268
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=79.10 E-value=1.9 Score=32.57 Aligned_cols=58 Identities=12% Similarity=0.285 Sum_probs=44.2
Q ss_pred EEEec--CCCcHHHHHHHHhhhcCCC-CCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 470 TLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~--~~~tV~~lK~~I~~~~gip-~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..+++ ...||++|...+ +++ +...-+..+|..+..+ ..++.-+++||.|.+.-...||
T Consensus 9 ~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 9 PSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp EEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred EEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 34556 678999998764 677 7767788899888654 4556667789999999888888
No 269
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=78.78 E-value=7.9 Score=30.35 Aligned_cols=72 Identities=11% Similarity=0.268 Sum_probs=47.0
Q ss_pred cCCeEEEEEecC------C-cEEEEEEcCCCcHHHHHHHHccccC-C----------CCCCeEEEecCcccccCCccccc
Q 009518 74 RGGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADY 135 (533)
Q Consensus 74 ~~~~~i~vk~~~------g-~~~~l~v~~~~tV~~lK~~i~~~~g-i----------p~~~q~L~~~G~~L~d~~~l~~y 135 (533)
.++|.|.|+... | ....++++...||.+|.+.+..... + ....-.+..||+.... ++
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~ 81 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DE 81 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TC
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CC
Confidence 468999998642 3 4678888888999999999876531 1 1123445677776643 56
Q ss_pred cccccccceeeeeec
Q 009518 136 NIQKESTLHLVLRLR 150 (533)
Q Consensus 136 ~i~~~s~i~l~~~~~ 150 (533)
-+++|+.|.++....
T Consensus 82 ~L~dGDeV~i~ppv~ 96 (98)
T 1vjk_A 82 ELKDGDVVGVFPPVS 96 (98)
T ss_dssp BCCTTCEEEEESCC-
T ss_pred CCCCCCEEEEECCCC
Confidence 678888887765433
No 270
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=78.33 E-value=2 Score=36.02 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=31.4
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc
Q 009518 468 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 502 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~ 502 (533)
...+.|..++|+.+|+..|++..|+|++.|||-..
T Consensus 57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 35688999999999999999999999999998754
No 271
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=77.70 E-value=5.4 Score=28.57 Aligned_cols=56 Identities=13% Similarity=0.285 Sum_probs=41.1
Q ss_pred EEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 471 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 471 ~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
+++ ...||++|...+ ++++....+..+|..+..+ .-.+.-+++|+.|.+.-...||
T Consensus 9 ~~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 9 RPL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp ECC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred EEc-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 345 678999999887 4667777778889887643 2334457789999999888887
No 272
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=77.11 E-value=8.4 Score=31.18 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=53.8
Q ss_pred CEEEEEecCCCcHHHHHHHHhhh--------cCCCCCcEEEEEcCeecC--CCCcccccCCCCCCEEEEEEecCCC
Q 009518 467 KTITLEVESSDTIDNVKAKIQDK--------EGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 467 ~~~~~~v~~~~tV~~lK~~I~~~--------~gip~~~q~L~~~g~~L~--d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
..+.+-++|+++.++|-..+-.- ..|+++.=.|..+|++.. .+++|++.|+..-|.|++..+-+-|
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TPgL~G 113 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTPGLKG 113 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECTTCCC
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCCCcCc
Confidence 35889999999999998776543 467888888999999986 4689999999999999887665444
No 273
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=76.77 E-value=12 Score=29.14 Aligned_cols=70 Identities=24% Similarity=0.265 Sum_probs=55.4
Q ss_pred eEEEEcCCC---cEEEEEecCcccHHHHHHHHHhhhCCCCcc--ceEEEcc---EEcCCCCCccccccccccccceEE
Q 009518 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFAG---KQLEDGRTLADYNIQKESTLHLVL 71 (533)
Q Consensus 2 ~i~~~~~~g---~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~--q~l~~~g---~~L~~~~tl~~y~i~~~sti~l~~ 71 (533)
.|+|.+++. ...+++|...--|..+..|+-++.+++.+. --|.+.- -.|.-.-||..|+|+..+.+++..
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 589999775 678899999999999999999999887654 2344422 246677899999999999988764
No 274
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=76.02 E-value=5.3 Score=38.44 Aligned_cols=71 Identities=8% Similarity=0.015 Sum_probs=53.9
Q ss_pred CceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCc-eeEEec-----cEEcCCCCcccccccccCCeEEEE
Q 009518 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA-----GKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 304 ~~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~-q~L~~~-----g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
.+.+-|..++|...++.+++++|+.|+-..++++.|+.... ..|.|. -.+|+..+++.+.......+++++
T Consensus 17 ~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~fr 93 (296)
T 3qij_A 17 QGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFN 93 (296)
T ss_dssp CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEE
T ss_pred eEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEE
Confidence 35677888999999999999999999999999999996544 447663 368999999988753323344443
No 275
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=73.63 E-value=3.4 Score=34.54 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=33.0
Q ss_pred cEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEcc
Q 009518 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (533)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g 47 (533)
...++.|..+.|+.++++.|.+..|+|++.|+|+.--
T Consensus 56 ~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~ 92 (130)
T 2kvr_A 56 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQ 92 (130)
T ss_dssp SCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECC
T ss_pred CcceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEee
Confidence 3457899999999999999999999999999998743
No 276
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=71.87 E-value=25 Score=27.41 Aligned_cols=65 Identities=14% Similarity=0.221 Sum_probs=40.2
Q ss_pred CEEEEEec--CCCcHHHHHHHHhhhcCCCCC-c------------EEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 009518 467 KTITLEVE--SSDTIDNVKAKIQDKEGIPPD-Q------------QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 531 (533)
Q Consensus 467 ~~~~~~v~--~~~tV~~lK~~I~~~~gip~~-~------------q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~G 531 (533)
+...++++ ...||++|...+.++..-... - ..+.-|+...+-.. =.++-+++|+.|.+.-+..|
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~-~~d~~L~dgDeVa~~Ppv~G 98 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEG-EKDYILEDGDIISFTSTLHG 98 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGT-GGGCBCCTTCEEEEEECTTC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccC-CCCcCcCCCCEEEEECCCCC
Confidence 34566666 678999999999987631111 1 12333444321000 03456788999999988888
Q ss_pred C
Q 009518 532 G 532 (533)
Q Consensus 532 G 532 (533)
|
T Consensus 99 G 99 (99)
T 2qjl_A 99 G 99 (99)
T ss_dssp C
T ss_pred C
Confidence 7
No 277
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=71.20 E-value=14 Score=38.85 Aligned_cols=65 Identities=28% Similarity=0.453 Sum_probs=45.6
Q ss_pred CceEEEEeccCccHHHHHHHhccc--cCCCC------CceeEEe----ccE-EcCC-------------CCccccccccc
Q 009518 314 GKTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIF----AGK-QLED-------------GRTLADYNIQK 367 (533)
Q Consensus 314 g~~~~~~v~~~~ti~~lK~~i~~~--~~ip~------~~q~L~~----~g~-~L~~-------------~~tl~~y~i~~ 367 (533)
...+.+.|-..|||.++|+||-+. .|.|. +...|-+ .|+ .|.| =-||++|+|++
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 466888999999999999999862 24444 3344544 122 3444 24889999999
Q ss_pred CCeEEEEEEec
Q 009518 368 ESTLHLVLRLR 378 (533)
Q Consensus 368 ~~~l~l~~~~~ 378 (533)
|+++.|.++..
T Consensus 326 ga~v~L~p~~~ 336 (627)
T 3ig3_A 326 GSLVALVPKQV 336 (627)
T ss_dssp TCEEEEEEC--
T ss_pred CceEEEEeccc
Confidence 99999998753
No 278
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=71.19 E-value=14 Score=28.42 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=36.0
Q ss_pred eEEE-eCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCc-EEEEEcC
Q 009518 459 IFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG 503 (533)
Q Consensus 459 i~v~-~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~-q~L~~~g 503 (533)
+.|| ...|..+.+.++++.+..+|..++.+..+++..+ +.+.|-.
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 3444 3557899999999999999999999999998655 6677643
No 279
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=70.86 E-value=18 Score=34.45 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=54.7
Q ss_pred CeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCc-EEEEE---cCe--ecCCCCcccccCCCCCCEEEEEEec
Q 009518 456 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 456 ~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~-q~L~~---~g~--~L~d~~tL~~~~I~~~~~l~l~~~l 529 (533)
++.+.|..++| +..+.++++.|+.++-..|+...|+.... +-|.+ +|. -|+.++++.+.++..+....+.+|.
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 35677778888 67899999999999999999999987543 45555 233 3677888988877666666665553
No 280
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=70.31 E-value=11 Score=29.21 Aligned_cols=67 Identities=19% Similarity=0.296 Sum_probs=47.2
Q ss_pred eEEEc-cCCceEEEEeccCccHHHHHHHhccccCCCCCc-eeEEeccEEcCCCCcc----------cccccccCCeEEEE
Q 009518 307 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTL----------ADYNIQKESTLHLV 374 (533)
Q Consensus 307 i~v~~-~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~-q~L~~~g~~L~~~~tl----------~~y~i~~~~~l~l~ 374 (533)
+-||. ++|..+.+.+.++-+-++|.+++++..++++++ ..+.|.... .|..|+ +-|.+..++.|.++
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe-GD~itisSd~EL~eAl~l~~~n~~~~l~ih 85 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE-GDPCTVSSQLELEEAFRLYELNKDSELLIH 85 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS-SCCEECCSHHHHHHHHHHHHHTSCCCEEEE
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC-CCcccccCHHHHHHHHHHHHccCCCCEEEE
Confidence 44554 778999999999999999999999999998766 456664432 344444 33444466655554
No 281
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=69.47 E-value=17 Score=35.00 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=57.1
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCC-cEEEEE--cCe--ecCCCCcccccCCCCCCEEEEEEe
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~--~g~--~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
+.++.+.|..++| ...+.++++.|+.+|-..|+...|+... .+-|.+ +|. -|+.++++.+.++..+....+.+|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 4667788888898 7889999999999999999999998753 345555 333 377888999987766666655555
Q ss_pred c
Q 009518 529 L 529 (533)
Q Consensus 529 l 529 (533)
.
T Consensus 99 ~ 99 (314)
T 1h4r_A 99 A 99 (314)
T ss_dssp E
T ss_pred E
Confidence 3
No 282
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=69.28 E-value=16 Score=27.77 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=42.4
Q ss_pred EEEecCCCcHHHHHHHHhhhcC------C-----CCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 470 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~lK~~I~~~~g------i-----p~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.+++....||.+|...+..... + ......+..||+...... -.+.-+++|+.|.+.-...||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence 3456667899999999987741 1 113456777888765321 123457889999998888887
No 283
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=68.46 E-value=1.6 Score=32.81 Aligned_cols=54 Identities=9% Similarity=0.214 Sum_probs=41.5
Q ss_pred EEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 470 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.++++...||.+|...+. +++....+..+|+.+..+ .-+++||.|.+.-...||
T Consensus 24 ~~~~~~~~Tv~dLl~~L~----~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG----FNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT----CSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHhC----CCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 345667789999988764 667666788899988765 457779999888888877
No 284
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=66.80 E-value=15 Score=26.91 Aligned_cols=70 Identities=13% Similarity=0.280 Sum_probs=42.2
Q ss_pred eEEEEEecCCc-EEEEEEcCCCcHHHHHHHHccccCCCC--CCeEEEecCcccccCCccccccccccccceeeeeecc
Q 009518 77 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (533)
Q Consensus 77 ~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~--~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~ 151 (533)
|.|+|+....- .-.+++ ...||.++.+.+....++.. ..-.+..||+...+ .++-+++|+.|.+.....|
T Consensus 1 M~v~V~~fa~l~~~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsG 73 (74)
T 3rpf_C 1 MMVEVRFFGPIKEENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCG 73 (74)
T ss_dssp CEEEEEECTTCCCCCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCC
T ss_pred CEEEEEEEeecceeEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCC
Confidence 45666654321 124566 66899999999986543322 23345566666432 2456788998888765444
No 285
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=65.04 E-value=35 Score=26.61 Aligned_cols=71 Identities=25% Similarity=0.299 Sum_probs=54.2
Q ss_pred eEEEEecCC---cEEEEEecCCCcHHHHHHHhhcccCCCCcc--eeEeecCc---cccCCccccccccccCCeEEEEEE
Q 009518 382 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFAGK---QLEDGRTLADYNIQKESTLHLVLR 452 (533)
Q Consensus 382 ~i~vk~~~g---~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~--q~l~~~g~---~l~d~~~L~~~~i~~~~~l~l~~~ 452 (533)
+|+|...+. ...++.|..+.-|+.+..++-++.+++.+= -.|-|..+ .++-..+|..||++.++.+++.+.
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 467777554 567899999999999999999887766542 22445444 368899999999999999988763
No 286
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=65.00 E-value=21 Score=27.13 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=41.3
Q ss_pred CeEEEEeecCccHHHHHHHhhhhcC-C-----CC-----CCeeEEecCccccCCccccccccCCCceEEEEEee
Q 009518 239 KTITLEVESSDTIDNVKAKIQDKEG-I-----PP-----DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 301 (533)
Q Consensus 239 ~~i~~~v~~~~tV~~lK~~I~~~~g-i-----p~-----~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~ 301 (533)
....+++....||++|.+.+..+++ + .. ....+..||+.... ++.+++||.|.+++..
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv 86 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPV 86 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCC
Confidence 5677888778899999999988763 1 11 11455567877654 5678999999887543
No 287
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=64.56 E-value=12 Score=27.88 Aligned_cols=56 Identities=4% Similarity=0.097 Sum_probs=38.6
Q ss_pred eEEEEeecCccHHHHHHHhhhhcC-----CCCCCeeEEecCccccCCccccccccCCCceEEEEEee
Q 009518 240 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 301 (533)
Q Consensus 240 ~i~~~v~~~~tV~~lK~~I~~~~g-----ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~ 301 (533)
...++ ....||.+|.+.+..+++ ++........||+... .+..+++||.|.+++.-
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-----~~~~l~~gD~V~i~Ppv 78 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFPPV 78 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-----TTCBCCTTCEEEEECCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-----CCCCCCCCCEEEEeCCC
Confidence 55555 566799999999886643 3333445667887764 35678999999887543
No 288
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=64.45 E-value=31 Score=27.84 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=45.5
Q ss_pred CeeeEEEeC------CC--CEEEEEecC---CCcHHHHHHHHhhhcCCCCCcEE-------------EEEcCeecCCCCc
Q 009518 456 GMQIFVKTL------TG--KTITLEVES---SDTIDNVKAKIQDKEGIPPDQQR-------------LIFAGKQLEDGRT 511 (533)
Q Consensus 456 ~m~i~v~~~------~g--~~~~~~v~~---~~tV~~lK~~I~~~~gip~~~q~-------------L~~~g~~L~d~~t 511 (533)
+|+|.|+.. .| +.+.++++. ..||.+|...+.+.+ |....+ ++-||+..+ -
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlVN~~di~---~ 85 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNL--LKERPELFIQGDSVRPGILVLINDADWE---L 85 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTT--CCSCHHHHCCSSSCCSSEEEEESSSBHH---H
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHc--cchhHhhCccCCcccCCeEEEECCeeee---c
Confidence 467777643 34 356788884 369999999999876 111212 222333211 1
Q ss_pred c--cccCCCCCCEEEEEEecCCC
Q 009518 512 L--ADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 512 L--~~~~I~~~~~l~l~~~l~GG 532 (533)
| .++-+++|+.|.+.-.+.||
T Consensus 86 l~gldt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 86 LGELDYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp HCTTTCBCCSSEEEEEEECSCCC
T ss_pred cCCcCcCCCCCCEEEEeCCCCCC
Confidence 1 34668889999998888888
No 289
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=63.77 E-value=28 Score=36.61 Aligned_cols=63 Identities=29% Similarity=0.490 Sum_probs=46.0
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhc--CCC------CCcEEEEE----cCe-ecCCC-------------CcccccCCCCC
Q 009518 467 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 520 (533)
Q Consensus 467 ~~~~~~v~~~~tV~~lK~~I~~~~--gip------~~~q~L~~----~g~-~L~d~-------------~tL~~~~I~~~ 520 (533)
....++|-..+||.++|++|-+.. |+| +++..|-+ .|+ .|.|. .||++|+|.+|
T Consensus 247 ~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~Dg 326 (627)
T 3ig3_A 247 AQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTDG 326 (627)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCCC
Confidence 567788889999999999998763 454 45556654 233 35442 48999999999
Q ss_pred CEEEEEEec
Q 009518 521 STLHLVLRL 529 (533)
Q Consensus 521 ~~l~l~~~l 529 (533)
+++-|.-|.
T Consensus 327 a~v~L~p~~ 335 (627)
T 3ig3_A 327 SLVALVPKQ 335 (627)
T ss_dssp CEEEEEEC-
T ss_pred ceEEEEecc
Confidence 999987665
No 290
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=61.97 E-value=21 Score=37.56 Aligned_cols=63 Identities=30% Similarity=0.478 Sum_probs=45.1
Q ss_pred CEEEEEecCCCcHHHHHHHHhhhc--CCCC------CcEEEEE--c--Ce-ecCCC-------------CcccccCCCCC
Q 009518 467 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF--A--GK-QLEDG-------------RTLADYNIQKE 520 (533)
Q Consensus 467 ~~~~~~v~~~~tV~~lK~~I~~~~--gip~------~~q~L~~--~--g~-~L~d~-------------~tL~~~~I~~~ 520 (533)
..+.++|-..+||.++|++|-+.. |+|. ++..|-+ + |+ .|.|. .||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 347788889999999999998542 5554 4445544 2 33 35542 48999999999
Q ss_pred CEEEEEEec
Q 009518 521 STLHLVLRL 529 (533)
Q Consensus 521 ~~l~l~~~l 529 (533)
+++-|+-+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999887654
No 291
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=60.49 E-value=29 Score=36.63 Aligned_cols=74 Identities=15% Similarity=0.265 Sum_probs=56.3
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCC-cEEEEEc---C--eecCCCCcccccCCCCCCEEEEEEe
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~-~q~L~~~---g--~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
.++.+.|..++| +..+.|+++.|+.+|-..|+...|+... .+-|.|. | .-|+.++++.+.++..+....+.+|
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 456777888888 6789999999999999999999998643 4566653 2 2467788899887777766666655
Q ss_pred c
Q 009518 529 L 529 (533)
Q Consensus 529 l 529 (533)
.
T Consensus 82 v 82 (575)
T 2i1j_A 82 A 82 (575)
T ss_dssp E
T ss_pred E
Confidence 3
No 292
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=60.13 E-value=7.1 Score=42.28 Aligned_cols=51 Identities=31% Similarity=0.602 Sum_probs=42.2
Q ss_pred CCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc-CeecCCCCccccc
Q 009518 465 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADY 515 (533)
Q Consensus 465 ~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~-g~~L~d~~tL~~~ 515 (533)
..+...+.+.+++|+++++..|++.+|||++.|.+++. |..+++.....+|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 34456788999999999999999999999999999885 5566666666665
No 293
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=59.52 E-value=30 Score=34.28 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=38.0
Q ss_pred cCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEE
Q 009518 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (533)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~ 49 (533)
..+-....+.+.+.+|+.++++++++..++++..|.+++.+..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~ 360 (396)
T 4eut_A 318 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRR 360 (396)
T ss_dssp TTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSE
T ss_pred eccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCC
Confidence 3455677899999999999999999999999999999998843
No 294
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=58.91 E-value=27 Score=27.41 Aligned_cols=59 Identities=12% Similarity=0.287 Sum_probs=41.6
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCC-----------cEEEEEcC-eecCC------CCcccccCCCCCCEEEEE
Q 009518 468 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLV 526 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~~gip~~-----------~q~L~~~g-~~L~d------~~tL~~~~I~~~~~l~l~ 526 (533)
...++++++.|..+|-..+.+.-..... ...||..+ ..|+. +++|.+.|+.+|+.|+++
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 4568999999999999999985433222 33344433 23332 368999999999998875
No 295
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=55.21 E-value=35 Score=32.51 Aligned_cols=75 Identities=8% Similarity=0.003 Sum_probs=53.9
Q ss_pred cCCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCc-EEEEEc---C--eecCCCCcccccCCCCCCEEEEEE
Q 009518 454 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 454 ~~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~-q~L~~~---g--~~L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
...+.+.|..++|....+.|++..|+.+|-..|+...|+.... +-|.+. | .-|+.++++.+.......++.+.+
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frv 94 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNV 94 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEE
Confidence 3567888889999999999999999999999999999987544 556553 2 246777888776544444555544
Q ss_pred e
Q 009518 528 R 528 (533)
Q Consensus 528 ~ 528 (533)
+
T Consensus 95 k 95 (296)
T 3qij_A 95 K 95 (296)
T ss_dssp S
T ss_pred E
Confidence 4
No 296
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=53.92 E-value=71 Score=25.66 Aligned_cols=63 Identities=21% Similarity=0.263 Sum_probs=38.8
Q ss_pred CeEEEEeec---CccHHHHHHHhhhhcC-CC---------CCCeeEEe-cCccccCCccc--cccccCCCceEEEEEeec
Q 009518 239 KTITLEVES---SDTIDNVKAKIQDKEG-IP---------PDQQRLIF-AGKQLEDGRTL--ADYNIQKESTLHLVLRLR 302 (533)
Q Consensus 239 ~~i~~~v~~---~~tV~~lK~~I~~~~g-ip---------~~~q~L~~-~g~~L~d~~tl--~~~~i~~~~ti~l~~~~~ 302 (533)
+.+.+++.. ..||++|...+.+++. +. .....+++ |++ |.+-+ .+|.+++||.|.+++..+
T Consensus 30 ~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~---di~~l~gldt~L~dGDeV~iip~va 106 (114)
T 1wgk_A 30 KKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDA---DWELLGELDYQLQDQDSILFISTLH 106 (114)
T ss_dssp SEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSS---BHHHHCTTTCBCCSSEEEEEEECSC
T ss_pred eEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCe---eeeccCCcCcCCCCCCEEEEeCCCC
Confidence 366777773 3599999999998862 10 01112222 332 22332 458899999998887666
Q ss_pred CC
Q 009518 303 GG 304 (533)
Q Consensus 303 ~~ 304 (533)
+|
T Consensus 107 GG 108 (114)
T 1wgk_A 107 GG 108 (114)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 297
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=53.91 E-value=62 Score=24.62 Aligned_cols=60 Identities=12% Similarity=0.222 Sum_probs=38.5
Q ss_pred EEEeecCccHHHHHHHhhhhcC-----C-CC--C-----CeeEEecCccccCCccccccccCCCceEEEEEeecC
Q 009518 242 TLEVESSDTIDNVKAKIQDKEG-----I-PP--D-----QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 303 (533)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~g-----i-p~--~-----~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~~~ 303 (533)
.+++ ...||++|.+.+..+++ + .. + ...+..||+....... .++.+++||+|.+++..++
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~G 92 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAG 92 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTT
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCC
Confidence 3554 45799999999998764 1 10 1 2445557776654322 3467899999988865443
No 298
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=53.10 E-value=29 Score=27.37 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=33.5
Q ss_pred eeEEEEecCCcEEEEEecCCCcHHHHHHHhhcccCCCCcc
Q 009518 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 420 (533)
Q Consensus 381 ~~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~ 420 (533)
.-|.|-..+|...++.|++++|+.|+-+.+..+.++....
T Consensus 10 ~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~ 49 (100)
T 1wgr_A 10 HVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDE 49 (100)
T ss_dssp EEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCC
T ss_pred EEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCC
Confidence 3456667899999999999999999999999998766543
No 299
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=51.53 E-value=56 Score=25.37 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=45.7
Q ss_pred CeeeEEEeCC------CCEEEEEecCCCcHHHHHHHHhhhcC-CCC---------CcE-------EEEEcCeecCCCCcc
Q 009518 456 GMQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTL 512 (533)
Q Consensus 456 ~m~i~v~~~~------g~~~~~~v~~~~tV~~lK~~I~~~~g-ip~---------~~q-------~L~~~g~~L~d~~tL 512 (533)
+|++.|+... |. ..++++ ..||.+|...+..... +.. ... .+..||+...... -
T Consensus 3 mm~v~V~~fa~lr~~~g~-~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~ 79 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGT-PELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-G 79 (99)
T ss_dssp CCEEEEEECTHHHHHHSS-SEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-S
T ss_pred ceEEEEEEeHHHHHHhCC-CeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-C
Confidence 3566666532 32 233444 6899999999987741 111 012 5677787664221 1
Q ss_pred cccCCCCCCEEEEEEecCCC
Q 009518 513 ADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 513 ~~~~I~~~~~l~l~~~l~GG 532 (533)
.+.-+++|+.|.+.-...||
T Consensus 80 ~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 80 LETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp TTSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCCEEEEECCCCCC
Confidence 23357789999998888887
No 300
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=50.74 E-value=43 Score=25.58 Aligned_cols=58 Identities=10% Similarity=0.146 Sum_probs=39.3
Q ss_pred CCCeEEEEeecC-ccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEee
Q 009518 237 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 301 (533)
Q Consensus 237 ~g~~i~~~v~~~-~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~ 301 (533)
+|+.+ ++... .||.+|.+.+ ++++..-....||+.+..+ ...+..+++||.|-++..-
T Consensus 26 NGe~~--el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V 84 (87)
T 1tyg_B 26 NGKDV--KWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFV 84 (87)
T ss_dssp TTEEE--CCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEEC
T ss_pred CCEEE--ECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEccc
Confidence 45544 45565 7999998766 5666666677788876443 3334578999999887543
No 301
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=50.60 E-value=23 Score=25.97 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=38.8
Q ss_pred CeEEEEeecCccHHHHHHHhhhhcCCCCCCe--eEEecCccccCCccccccccCCCceEEEEEe
Q 009518 239 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 239 ~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q--~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
....+++....||.+|.+.+...++- ...- ....||+.... +..+++||.|.++..
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQK-----SDFIQPNDTVALIPP 73 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECT-----TSEECTTCEEEEECS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCC-----CCCcCCCCEEEEECC
Confidence 35566777778999999998776421 1222 56678887754 367889999988754
No 302
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=49.99 E-value=24 Score=34.93 Aligned_cols=50 Identities=22% Similarity=0.347 Sum_probs=39.3
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeec--CCCCccccc
Q 009518 466 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADY 515 (533)
Q Consensus 466 g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L--~d~~tL~~~ 515 (533)
-....+.+.+..|+.+++..+++.+++++++|.+.+.+..+ +...+-..|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~ 372 (396)
T 4eut_A 321 MTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHF 372 (396)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSS
T ss_pred ceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccC
Confidence 34567788899999999999999999999999999987433 334444444
No 303
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=49.91 E-value=38 Score=26.67 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=33.7
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCC
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~ 114 (533)
+..-|.|-..+|+...|.|++++|+.++-+.+..+.+...
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~ 47 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALS 47 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCC
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 3455666678999999999999999999999999887654
No 304
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=47.59 E-value=21 Score=26.31 Aligned_cols=57 Identities=7% Similarity=0.150 Sum_probs=39.1
Q ss_pred cCCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEeecCccccCCccccccccccCCeEEEEEE
Q 009518 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (533)
Q Consensus 388 ~~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~~L~~~~i~~~~~l~l~~~ 452 (533)
.+|+.+. + ++.|+.+|-+. +++++..-....+|..+..+ ..++.-++.|+.+.++..
T Consensus 5 vNG~~~e--~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 5 INGEQRE--V-QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTP 61 (73)
T ss_dssp ETTEEEC--C-CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECC
T ss_pred ECCEEEE--c-CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEcc
Confidence 4577554 4 77999999886 57776655555777766433 245667888898888754
No 305
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=47.27 E-value=11 Score=29.98 Aligned_cols=69 Identities=26% Similarity=0.380 Sum_probs=53.7
Q ss_pred eEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCcc--ceEEEccE---EcCCCCCccccccccccccceEE
Q 009518 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFAGK---QLEDGRTLADYNIQKESTLHLVL 71 (533)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~--q~l~~~g~---~L~~~~tl~~y~i~~~sti~l~~ 71 (533)
.|+|.+++ ...+++|...--|..+..|+-++.+++.+. --|.+.-+ .|.-.-||..|+|+..+.+++..
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 46777777 888899999999999999999998877643 33444322 36677899999999999988764
No 306
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=46.48 E-value=48 Score=25.13 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=33.1
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 500 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~ 500 (533)
..|+|.+-.. +..+.+.|+++.+.++|+.+|..+..+. .+.++
T Consensus 11 ~~~KVK~yy~-DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~ 53 (85)
T 1ip9_A 11 KTTKIKFYYK-DDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQ 53 (85)
T ss_dssp CCEEEEECBT-TCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEE
T ss_pred CceEEEEEec-CcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEE
Confidence 3455555444 5689999999999999999999999883 44444
No 307
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=46.05 E-value=13 Score=29.96 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=45.4
Q ss_pred CeeeEEEeC------CCCEEEEEecC----CCcHHHHHHHHhhhcCCCCCcEEEE-EcC--e------ecCCCCc---c-
Q 009518 456 GMQIFVKTL------TGKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRT---L- 512 (533)
Q Consensus 456 ~m~i~v~~~------~g~~~~~~v~~----~~tV~~lK~~I~~~~gip~~~q~L~-~~g--~------~L~d~~t---L- 512 (533)
+|+|.|+.. -|+...++++. ..||.+|-..+.+.. |...-.|+ -+| . .|-|+.- |
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 366666642 34555677663 249999999998875 22222222 123 1 2223322 1
Q ss_pred -cccCCCCCCEEEEEEecCCC
Q 009518 513 -ADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 513 -~~~~I~~~~~l~l~~~l~GG 532 (533)
.+|-+++||.|.+...+-||
T Consensus 82 gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCCC
T ss_pred CcccCCCCcCEEEEeCCCccc
Confidence 35778999999998888888
No 308
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=44.03 E-value=20 Score=28.77 Aligned_cols=75 Identities=17% Similarity=0.300 Sum_probs=42.0
Q ss_pred CeeEEEEcC------CCCeEEEEeec----CccHHHHHHHhhhhcCCCCCCeeE-EecC--c------cc---cCCccc-
Q 009518 228 GMQIFVKTL------TGKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRL-IFAG--K------QL---EDGRTL- 284 (533)
Q Consensus 228 ~~~i~V~~~------~g~~i~~~v~~----~~tV~~lK~~I~~~~gip~~~q~L-~~~g--~------~L---~d~~tl- 284 (533)
.|.|.|+.. -|+...+++.. ..||++|-+.+.+++. ...-.+ .-+| . .| .|.+.+
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 355566543 24555677663 2499999998888752 111111 1112 1 12 122222
Q ss_pred -cccccCCCceEEEEEeecCC
Q 009518 285 -ADYNIQKESTLHLVLRLRGG 304 (533)
Q Consensus 285 -~~~~i~~~~ti~l~~~~~~~ 304 (533)
.+|.+++||+|.++....++
T Consensus 82 gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCCC
T ss_pred CcccCCCCcCEEEEeCCCccc
Confidence 35789999999887666554
No 309
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=43.18 E-value=53 Score=26.94 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=35.7
Q ss_pred CCcHHHHHHHHhhhcCCCCCcEEEEE--cCeecC-----C--CCcccccCCCCCCEEEEE
Q 009518 476 SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE-----D--GRTLADYNIQKESTLHLV 526 (533)
Q Consensus 476 ~~tV~~lK~~I~~~~gip~~~q~L~~--~g~~L~-----d--~~tL~~~~I~~~~~l~l~ 526 (533)
..|..+|-..+...+|.+. ...+.- +.+.|- | +++|++.|++.|+.|.+.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 5689998888888888763 555442 234332 2 479999999999988764
No 310
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=43.09 E-value=32 Score=24.77 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=32.3
Q ss_pred CeEEEEcCCCcEEEEEecCcccHHHHHHHHHhhhCCCCccceEEEccEEcCCC
Q 009518 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 53 (533)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i~~~~q~l~~~g~~L~~~ 53 (533)
|.|.|..++|+.. ++....|+.++.+.+....+-. .--...+|+..+-+
T Consensus 1 m~i~i~~p~g~~~--~~~~g~T~~dla~~i~~~l~~~--~vaa~vNg~lvdl~ 49 (73)
T 2kmm_A 1 MEVMVFTPKGEIK--RLPQGATALDFAYSLHSDLGDH--CIGAKVNHKLVPLS 49 (73)
T ss_dssp CCEEEECTTCCEE--EECTTCBHHHHHHHHCSHHHHT--EEEEEETTEECCTT
T ss_pred CeEEEEcCCCCEE--EcCCCCcHHHHHHHHhhccccc--eEEEEECCEEeCCC
Confidence 8899998899874 5667789999988885432211 11124677766554
No 311
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=41.93 E-value=1.1e+02 Score=23.03 Aligned_cols=60 Identities=20% Similarity=0.321 Sum_probs=48.3
Q ss_pred EEEEecCCCcHHHHHHHHhhhc-C--C---CCCcEEEEEcC--eecCCCCcccccCCCCCCEEEEEEe
Q 009518 469 ITLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 528 (533)
Q Consensus 469 ~~~~v~~~~tV~~lK~~I~~~~-g--i---p~~~q~L~~~g--~~L~d~~tL~~~~I~~~~~l~l~~~ 528 (533)
..+.|+..+|+.++=++++... | + |-.--+..++| ..+..+.|+++.||.+-+.|.+...
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 5668899999999999988763 3 2 22245778888 8899999999999999999987653
No 312
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=41.71 E-value=99 Score=23.86 Aligned_cols=34 Identities=12% Similarity=0.209 Sum_probs=24.1
Q ss_pred eEEEEEec------C-C-cEEEEEEc--CCCcHHHHHHHHcccc
Q 009518 77 MQIFVKTL------T-G-KTITLEVE--SSDTIDNVKAKIQDKE 110 (533)
Q Consensus 77 ~~i~vk~~------~-g-~~~~l~v~--~~~tV~~lK~~i~~~~ 110 (533)
|.|+|+.. . | +...++++ ...||.++.+.+.++.
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHC
Confidence 56666642 2 2 45777776 6789999999998665
No 313
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=41.69 E-value=73 Score=23.87 Aligned_cols=57 Identities=11% Similarity=0.220 Sum_probs=37.0
Q ss_pred EeecCccHHHHHHHhhhhcC------C-----CCCCeeEEecCccccCCccccccccCCCceEEEEEee
Q 009518 244 EVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 301 (533)
Q Consensus 244 ~v~~~~tV~~lK~~I~~~~g------i-----p~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~~ 301 (533)
++....||.+|.+.+..+++ + .........||+...... -.++.+++||+|.+++..
T Consensus 20 ~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv 87 (90)
T 2g1e_A 20 TFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPV 87 (90)
T ss_dssp EESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCT
T ss_pred EcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCC
Confidence 45556799999999987752 1 013345666887665322 234578999999887543
No 314
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=41.37 E-value=38 Score=23.93 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=39.7
Q ss_pred ccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEEEE
Q 009518 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~~~ 376 (533)
+.||+.+.+ ...|+.++.+.+. +++..-....+|..++.+ .-.+..++++|.+.+.+.
T Consensus 3 ~vNg~~~~~---~~~tv~~ll~~l~----~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 3 WLNGEPRPL---EGKTLKEVLEEMG----VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp EETTEEECC---TTCCHHHHHHHHT----BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEEC
T ss_pred EECCEEEEc---CCCcHHHHHHHcC----CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEee
Confidence 346776654 6689999988774 556555566677765432 334567899999998854
No 315
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=41.08 E-value=73 Score=22.71 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=39.3
Q ss_pred eeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 009518 457 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 457 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
|.|.|...+|+. .+++...|+.+|-..+.... +....-...+|+..+-+..| .+|+.|.+.-
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l--~~~~vaa~vNg~lvdl~~~L-----~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDL--GDHCIGAKVNHKLVPLSYVL-----NSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHH--HHTEEEEEETTEECCTTCBC-----CSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhcc--ccceEEEEECCEEeCCCcCc-----CCCCEEEEEE
Confidence 667788777865 56678899999988874332 12223334678766554444 4577776654
No 316
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=40.80 E-value=22 Score=38.36 Aligned_cols=54 Identities=28% Similarity=0.554 Sum_probs=45.2
Q ss_pred ccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEe-ccEEcCCCCcccccc
Q 009518 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN 364 (533)
Q Consensus 311 ~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~-~g~~L~~~~tl~~y~ 364 (533)
....+...+.+.+..|+.+++..|.+..|||++.|.+++ +|..+++......|-
T Consensus 318 ~~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~ 372 (676)
T 3qa8_A 318 MVSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYV 372 (676)
T ss_dssp SSSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSC
T ss_pred ccccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhhe
Confidence 455666678999999999999999999999999999888 577777777766653
No 317
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=39.88 E-value=98 Score=23.27 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=46.4
Q ss_pred EEEEEcCCCcHHHHHHHHccc-cC--CC---CCCeEEEecC--cccccCCccccccccccccceeee
Q 009518 89 ITLEVESSDTIDNVKAKIQDK-EG--IP---PDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~-~g--ip---~~~q~L~~~G--~~L~d~~~l~~y~i~~~s~i~l~~ 147 (533)
.-+.|+..+|+.++-++++.. .| ++ ..-.++.++| ..+..+.|+++-||.+-..+.+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 456799999999999999864 24 32 2246777999 889999999999998887776654
No 318
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=37.89 E-value=75 Score=25.15 Aligned_cols=70 Identities=10% Similarity=0.218 Sum_probs=48.7
Q ss_pred EEEEecCCcEEEEEEcCCCcHHHHHHHHccccCCCCCCeEEE---ecCc--ccccCCccccccccccccceeeee
Q 009518 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGK--QLEDGRTLADYNIQKESTLHLVLR 148 (533)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~G~--~L~d~~~l~~y~i~~~s~i~l~~~ 148 (533)
..|-..+..-+++.+..+.|+.+++..++++.+...+.+.|+ ++|. .|+++..--.-.+.-+..+++..+
T Consensus 12 ~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 12 CHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp EEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred EEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 334445556788889999999999999999999877678776 6774 345554444444555666666554
No 319
>1lfd_A Ralgds; RAL, effector interaction; HET: GNP; 2.10A {Rattus norvegicus} SCOP: d.15.1.5 PDB: 2b3a_A
Probab=37.62 E-value=1.1e+02 Score=23.29 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=32.1
Q ss_pred eEEEEcCCCcEEE-EEecCcccHHHHHHHHHhhhCCCCc
Q 009518 2 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPD 39 (533)
Q Consensus 2 ~i~~~~~~g~~~~-~~v~~~dtv~~ik~ki~~~~~i~~~ 39 (533)
.|.+++.+|.-+- |.+...|....+-.+.-+|+++..+
T Consensus 7 RVs~d~~~gn~YKSI~ltsqDrtp~vI~~al~Khnl~~~ 45 (87)
T 1lfd_A 7 RVSLDVDNGNMYKSILVTSQDKAPTVIRKAMDKHNLDED 45 (87)
T ss_dssp EEEESSCSSEEEEEEEEETTCBHHHHHHHHHHHTTCCSS
T ss_pred EEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCC
Confidence 4677788887655 8899999999999999999998754
No 320
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=37.23 E-value=78 Score=23.98 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=30.5
Q ss_pred CCeEEEEEecCCcEEEEEEcCCCcHHHHHHHHccccCC
Q 009518 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 112 (533)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi 112 (533)
+.|.|.+- ..+..|.+.|+++.+..+|++||.++..+
T Consensus 11 ~~~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk~ 47 (85)
T 1ip9_A 11 KTTKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRIDT 47 (85)
T ss_dssp CCEEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHTS
T ss_pred CceEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 44555553 45679999999999999999999999887
No 321
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=35.78 E-value=54 Score=34.33 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=43.3
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCC--CceeEEec----cEEcCCCCccc
Q 009518 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFA----GKQLEDGRTLA 361 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~--~~q~L~~~----g~~L~~~~tl~ 361 (533)
+.+-|..++|...++.+++++|++|+-..++++.|+.. +-..|++. .++|+++..+.
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~i~ 279 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIESRTVVA 279 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEESSSCEEECCTTSBHH
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEeCCeeEecCCCCchh
Confidence 34567778999999999999999999999999999974 34456552 24466665543
No 322
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=34.80 E-value=44 Score=26.17 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=30.7
Q ss_pred CCeEEEEEecC-------CcEEEEEEcCCCcHHHHHHHHccccCCC
Q 009518 75 GGMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIP 113 (533)
Q Consensus 75 ~~~~i~vk~~~-------g~~~~l~v~~~~tV~~lK~~i~~~~gip 113 (533)
+++.|.|...+ +..+.+-|+++.+..+|..+|.++.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 44556665432 5679999999999999999999998765
No 323
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=34.61 E-value=1.3e+02 Score=23.78 Aligned_cols=65 Identities=9% Similarity=0.223 Sum_probs=47.2
Q ss_pred CCcEEEEEecCCCcHHHHHHHhhcccCCCCcceeEe---ecCcc--ccCCccccccccccCCeEEEEEEe
Q 009518 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLRL 453 (533)
Q Consensus 389 ~g~~~~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~---~~g~~--l~d~~~L~~~~i~~~~~l~l~~~~ 453 (533)
+....++.++.+.|+++++..+.++.+...+.+.|. ++|.. ++++..-..-.+..+..|++..+.
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~kd 87 (104)
T 1wgy_A 18 EHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRKD 87 (104)
T ss_dssp SSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEECC
T ss_pred cCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeehH
Confidence 444567889999999999999999999887777777 45543 555554444455556777777653
No 324
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=34.29 E-value=53 Score=23.27 Aligned_cols=57 Identities=9% Similarity=0.136 Sum_probs=38.3
Q ss_pred CCCeEEEEeecCccHHHHHHHhhhhcCCCCCCeeEEecCccccCCccccccccCCCceEEEEEe
Q 009518 237 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 237 ~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
+|+.+ ++....||.+|.+.+ ++++..-....||+..... ...+..+++||.|.++..
T Consensus 6 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 6 NDQAM--QCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp SSCEE--CCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEES
T ss_pred CCEEE--EcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEee
Confidence 45544 456678999998876 4666666666788776432 223456889999988754
No 325
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=33.98 E-value=1.2e+02 Score=22.60 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=54.7
Q ss_pred EEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEE-EcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 468 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~-~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
-..+.|+.......+-+-.++++.+|+..--++ -+|.-++..+|-...=++.||.|.|.-|=|=|
T Consensus 25 fkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG 90 (92)
T 1j0g_A 25 YKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 90 (92)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSC
T ss_pred ceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccccc
Confidence 356789999988888888899999999887665 46888999999888888999999999887654
No 326
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=33.13 E-value=1.2e+02 Score=22.98 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=30.7
Q ss_pred EEEec-cCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCccccc-----ccccCCeEEEE
Q 009518 318 TLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY-----NIQKESTLHLV 374 (533)
Q Consensus 318 ~~~v~-~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y-----~i~~~~~l~l~ 374 (533)
++.++ .+-+|.|||+.|..+.++-.....|.. .|.+|=++| -|+.++++.+.
T Consensus 21 ~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i-----~na~T~eeY~Dd~~lIprnssViVr 78 (86)
T 2c7h_A 21 TVTFDGLHISLCDLKKQIMGREKLKAADCDLQI-----TNAQTKEEYTDDNALIPKNSSVIVR 78 (86)
T ss_dssp EEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEE-----EESSSCCEECSTTCEEETTCCEEEE
T ss_pred eEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEE-----eCCCCCCccCCCceEEecCCEEEEE
Confidence 34443 567999999999987777543344332 233344344 35566666655
No 327
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=31.22 E-value=92 Score=24.92 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=46.1
Q ss_pred eEEEEcCCCcEEE-EEecCcccHHHHHHHHHhhhCCCCc-c-ceEEEccEEcCCCCCcc-------ccccccccccceEE
Q 009518 2 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPD-Q-QRLIFAGKQLEDGRTLA-------DYNIQKESTLHLVL 71 (533)
Q Consensus 2 ~i~~~~~~g~~~~-~~v~~~dtv~~ik~ki~~~~~i~~~-~-q~l~~~g~~L~~~~tl~-------~y~i~~~sti~l~~ 71 (533)
.|.+++.+|.-+- |.+...|....+-.+.-+|+++..+ . .+-++ +.|++++-|. .|-+.....+.+++
T Consensus 32 RVs~d~~~gn~YKSIlltsqDktp~VI~raL~Khnl~~~~~~~y~L~--Q~Lp~~kEL~iPd~aNVFYAm~~s~~~dFvL 109 (115)
T 1rax_A 32 RVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELL--QILSDDRKLKIPENANVFYAMNSTANYDFVL 109 (115)
T ss_dssp EEEESSSSCCCCEEEEEETTCCHHHHHHHHHHHHTCTTSCSTTEEEE--EECSSSCEEEECTTSCHHHHSCTTSCCEEEE
T ss_pred EEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEEE--EEcCCCCeEecCCCcceEEEEcCCCCccEEE
Confidence 4677788886554 8899999999999999999998743 1 22222 4555544322 34455555566666
Q ss_pred Eec
Q 009518 72 RLR 74 (533)
Q Consensus 72 ~~~ 74 (533)
|.+
T Consensus 110 R~r 112 (115)
T 1rax_A 110 KKR 112 (115)
T ss_dssp EEC
T ss_pred eec
Confidence 544
No 328
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=30.66 E-value=34 Score=25.53 Aligned_cols=27 Identities=26% Similarity=0.207 Sum_probs=24.4
Q ss_pred ceEEEEeccCccHHHHHHHhccccCCC
Q 009518 315 KTITLEVESSDTIDNVKAKIQDKEGIP 341 (533)
Q Consensus 315 ~~~~~~v~~~~ti~~lK~~i~~~~~ip 341 (533)
..+++.|.++-+..++..+|++++++.
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 367899999999999999999999975
No 329
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=29.92 E-value=79 Score=27.34 Aligned_cols=61 Identities=16% Similarity=0.279 Sum_probs=41.8
Q ss_pred EEEecCCCcHHHHHHHHhhhcC-CC---------CCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 009518 470 TLEVESSDTIDNVKAKIQDKEG-IP---------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 532 (533)
Q Consensus 470 ~~~v~~~~tV~~lK~~I~~~~g-ip---------~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l~GG 532 (533)
.++++. .||.+|...+...+. +. .....+.-||.......- .+.-+++|+.|.+.-...||
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG 87 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGG 87 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEECccccc
Confidence 445655 899999999987641 10 123456778887765321 23457889999998888887
No 330
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=29.74 E-value=60 Score=24.17 Aligned_cols=60 Identities=18% Similarity=0.302 Sum_probs=40.8
Q ss_pred eeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCCceeEEeccEEcCCCCcccccccccCCeEEEE
Q 009518 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 374 (533)
Q Consensus 306 ~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~~g~~L~~~~tl~~y~i~~~~~l~l~ 374 (533)
.|+|.+++|..+ .+..+.|+.|+-..|....+-.+ -.-..+|+..+ .+|.+++++++.+.
T Consensus 7 ~i~v~tP~G~~~--~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~-----L~~~L~~gd~VeIi 66 (78)
T 3hvz_A 7 EVFVFTPKGDVI--SLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVP-----IDYKVKTGEIIDVL 66 (78)
T ss_dssp EEEEECTTSCEE--EEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEEC-----TTCBCCTTCBEEEE
T ss_pred eEEEECCCCCEE--EecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcC-----CCcccCCCCEEEEE
Confidence 589999999875 56788999999988875443211 11122455433 35778888988886
No 331
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=29.19 E-value=1.8e+02 Score=21.82 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=48.9
Q ss_pred EEEEEecCCCcHHHHHHHHhhhc-CC--C--CCcEEEEEcCee--cCCCCcccccCCCCCCEEEEEE
Q 009518 468 TITLEVESSDTIDNVKAKIQDKE-GI--P--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 527 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~~-gi--p--~~~q~L~~~g~~--L~d~~tL~~~~I~~~~~l~l~~ 527 (533)
...+-|+..+|+.++=++++... |. + |.--+..++|.. +..+.|+++.||.+-+.|.+..
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 35678899999999999988763 32 1 235688899988 9999999999999999998865
No 332
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=28.74 E-value=35 Score=25.19 Aligned_cols=52 Identities=8% Similarity=0.186 Sum_probs=36.2
Q ss_pred EEEEcCCCcHHHHHHHHccccCCCCCCeEEEecCcccccCCccccccccccccceeeeeec
Q 009518 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (533)
Q Consensus 90 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~ 150 (533)
.++++...||.++.+.+ ++++..-.+..+|+....+ +-+++|+.|.+.....
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~ 75 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVS 75 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccc
Confidence 44566778999998765 4566666677888877654 5677888887765433
No 333
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=28.68 E-value=95 Score=25.45 Aligned_cols=51 Identities=22% Similarity=0.266 Sum_probs=36.7
Q ss_pred chHHHHHHHhhhhcCCCCCCeEEEe--CCeecCC-------CCCcccccCCCCCEEEEEEE
Q 009518 173 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLED-------GRTLADYNIQKESTLHLVLR 224 (533)
Q Consensus 173 dtV~~lK~~i~~~~gip~~~q~L~~--~g~~L~d-------~~tl~~y~I~~~s~i~l~~~ 224 (533)
.|..+|-+.++.+.|.+. ...+.- ..+.|.| +++|++.|+..|+.|.+.-.
T Consensus 20 ~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 20 MKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp CBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred cCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 488888888888888874 444432 2344432 58999999999999987754
No 334
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=28.30 E-value=1.4e+02 Score=23.20 Aligned_cols=57 Identities=7% Similarity=0.096 Sum_probs=40.2
Q ss_pred EEEEEecCCCcHHHHHHHHhhh---cCCCCCcEEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 009518 468 TITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 529 (533)
Q Consensus 468 ~~~~~v~~~~tV~~lK~~I~~~---~gip~~~q~L~~~g~~L~d~~tL~~~~I~~~~~l~l~~~l 529 (533)
...+++....||+++-....-. ..|......+-.+|+....+.. +++||.|.+.-.+
T Consensus 27 ~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~-----L~dGDRVEIyrpl 86 (97)
T 2hj1_A 27 LKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDV-----LKEGDRIEIYRPL 86 (97)
T ss_dssp EEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCB-----CCTTCEEEECCCC
T ss_pred EEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCcc-----CCCCCEEEEEecc
Confidence 4566888999999998887642 2455556677778887774444 5669998876443
No 335
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=28.28 E-value=66 Score=23.87 Aligned_cols=62 Identities=15% Similarity=0.334 Sum_probs=41.9
Q ss_pred cCCcEEEEEEc--CCCcHHHHHHHHccccCCC-CCCeEEEecCcccccCCccccccccccccceeeeeeccc
Q 009518 84 LTGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (533)
Q Consensus 84 ~~g~~~~l~v~--~~~tV~~lK~~i~~~~gip-~~~q~L~~~G~~L~d~~~l~~y~i~~~s~i~l~~~~~~~ 152 (533)
.+|+.. +++ ...||.+|-+.+ +++ +..--+..||..+... ...++-+++|+.|-++....||
T Consensus 5 vNGe~~--e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 5 VNGKPS--TVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp ETTEEE--ECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred ECCEEE--EcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 356644 455 678999988764 666 6666677888877532 3445667889988887655444
No 336
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=28.17 E-value=77 Score=25.26 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=26.8
Q ss_pred eEEEEecCCcEEEEEecCCCcHHHHHHHhhcc
Q 009518 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 413 (533)
Q Consensus 382 ~i~vk~~~g~~~~~~v~~~~Tv~~lK~~I~~~ 413 (533)
.|.+-+.+|-.++++++.++|+.++|+.+.+.
T Consensus 21 ~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 21 LVECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 44455678888899999999999999998775
No 337
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=27.62 E-value=1.3e+02 Score=22.71 Aligned_cols=60 Identities=15% Similarity=0.201 Sum_probs=47.3
Q ss_pred EEEEEEcCCCcHHHHHHHHccc-cCCC----CCCeEEEecCcc--cccCCccccccccccccceeee
Q 009518 88 TITLEVESSDTIDNVKAKIQDK-EGIP----PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 147 (533)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~-~gip----~~~q~L~~~G~~--L~d~~~l~~y~i~~~s~i~l~~ 147 (533)
..-+.|+..+|+.++-++++.. .|.. |.-.++..+|.. |..+.++++-||.+-..|.+..
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 3456799999999999999864 3432 235678899988 9999999999999888776653
No 338
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=27.22 E-value=63 Score=25.76 Aligned_cols=68 Identities=15% Similarity=0.229 Sum_probs=43.5
Q ss_pred eeEEEccCCceEEEEeccCccHHHHHHHhccccC--------CCCCceeEEe-c--c--EEc-CCCCcccccccccCCeE
Q 009518 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF-A--G--KQL-EDGRTLADYNIQKESTL 371 (533)
Q Consensus 306 ~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~--------ip~~~q~L~~-~--g--~~L-~~~~tl~~y~i~~~~~l 371 (533)
.+-+-.++|-.+++.++...|+.++|..+.+... -.++.+.... + | .++ ++++-|.+...- -..|
T Consensus 21 ~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~piL 99 (108)
T 2v1y_A 21 LVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPFL 99 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSEE
T ss_pred EEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceEE
Confidence 3445568899999999999999999998876422 3455555554 1 1 224 445666666543 3344
Q ss_pred EEE
Q 009518 372 HLV 374 (533)
Q Consensus 372 ~l~ 374 (533)
.++
T Consensus 100 klv 102 (108)
T 2v1y_A 100 KVI 102 (108)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 339
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=27.07 E-value=2.1e+02 Score=21.91 Aligned_cols=52 Identities=8% Similarity=0.143 Sum_probs=33.5
Q ss_pred CccHHHHHHHhhhhcC-CCCC---------Ce-------eEEecCccccCCccccccccCCCceEEEEEe
Q 009518 248 SDTIDNVKAKIQDKEG-IPPD---------QQ-------RLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (533)
Q Consensus 248 ~~tV~~lK~~I~~~~g-ip~~---------~q-------~L~~~g~~L~d~~tl~~~~i~~~~ti~l~~~ 300 (533)
..||.+|.+.+..+++ +... .. ....||+...... -.++.+++||+|.+++.
T Consensus 27 ~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 27 GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GLETLLKDSDEIGILPP 95 (99)
T ss_dssp CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-STTSCCCTTEEEEEECC
T ss_pred CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CCCCCCCCCCEEEEECC
Confidence 5799999999987752 1110 12 4566777654322 23457899999988754
No 340
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=26.82 E-value=56 Score=25.55 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=30.7
Q ss_pred ccceeeeeeecc-------CceEEeeecCCchHHHHHHHhhhhcCCC
Q 009518 150 RGGMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIP 189 (533)
Q Consensus 150 ~~~~~i~v~~~~-------g~~~~i~v~~~dtV~~lK~~i~~~~gip 189 (533)
.+.+.|.|...+ +..+.+-|.++.+..+|..+|.++.+++
T Consensus 3 ~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 3 LGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 344556665332 4568999999999999999999998765
No 341
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=26.02 E-value=56 Score=32.58 Aligned_cols=52 Identities=12% Similarity=0.035 Sum_probs=42.0
Q ss_pred cCCceEEEEeccCccHHHHHHHhc--cccCC---CCCceeEEec------cEEcCCCCccccc
Q 009518 312 LTGKTITLEVESSDTIDNVKAKIQ--DKEGI---PPDQQRLIFA------GKQLEDGRTLADY 363 (533)
Q Consensus 312 ~~g~~~~~~v~~~~ti~~lK~~i~--~~~~i---p~~~q~L~~~------g~~L~~~~tl~~y 363 (533)
++|.+.++.+++++||.||-..|+ .+.|+ .++...|.+. .++|+++.+|.+-
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~v 97 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGEV 97 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHHH
Confidence 788899999999999999999999 67775 3445666652 3899999999763
No 342
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=25.97 E-value=80 Score=24.67 Aligned_cols=58 Identities=12% Similarity=0.292 Sum_probs=40.3
Q ss_pred eEEEEeecCccHHHHHHHhhhhcCCCCC-----------CeeEEecC-ccccC------CccccccccCCCceEEE
Q 009518 240 TITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHL 297 (533)
Q Consensus 240 ~i~~~v~~~~tV~~lK~~I~~~~gip~~-----------~q~L~~~g-~~L~d------~~tl~~~~i~~~~ti~l 297 (533)
...++++++.|.+++...+.++-.+... ...|...+ ..|++ +++|.+.|+.+|+.|++
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~V 81 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAV 81 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEE
Confidence 5568899999999999999985432222 23333332 23333 67899999999999876
No 343
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=25.33 E-value=93 Score=25.24 Aligned_cols=59 Identities=12% Similarity=0.132 Sum_probs=40.2
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEE-EEEcCeecCCCCcccc---cCCCCCCEEEEEE
Q 009518 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLAD---YNIQKESTLHLVL 527 (533)
Q Consensus 469 ~~~~v~~~~tV~~lK~~I~~~~gip~~~q~-L~~~g~~L~d~~tL~~---~~I~~~~~l~l~~ 527 (533)
..+-|+.+.||+++...|..+..+++++-. |+-++.....+.++++ +.=.++.-|++..
T Consensus 50 ~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Y 112 (119)
T 3h9d_A 50 CKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKY 112 (119)
T ss_dssp CEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred ceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEE
Confidence 345789999999999999999999988744 4447774455556543 3222233566654
No 344
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.16 E-value=83 Score=24.21 Aligned_cols=62 Identities=13% Similarity=0.202 Sum_probs=39.5
Q ss_pred CCceEEEEeccCccHHHHHHHhccccCCCCCceeEEe--ccEEcCCCCcccccccccCCeEEEEEEec
Q 009518 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLR 378 (533)
Q Consensus 313 ~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~~q~L~~--~g~~L~~~~tl~~y~i~~~~~l~l~~~~~ 378 (533)
..++...-|-. .+.+||+.+.+++++++...-+|+. .|.+++++..+... +..|+.+.....
T Consensus 17 ~~Rs~k~GV~A-~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~~g 80 (91)
T 2eel_A 17 HDRSSRRGVMA-SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILEKG 80 (91)
T ss_dssp TTSCCCEEEEE-SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEETT
T ss_pred CCCCeEEeEEc-CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEcCC
Confidence 33333333333 3889999999999999765566655 47777766555444 355666655443
No 345
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=22.45 E-value=2.1e+02 Score=21.26 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=49.5
Q ss_pred EEEecCCCcHHHHHHHhhcccCCCCcceeEeecCcc-ccCCccccccccccCCeEEEEEEec
Q 009518 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRLR 454 (533)
Q Consensus 394 ~~~v~~~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~-l~d~~~L~~~~i~~~~~l~l~~~~~ 454 (533)
.+.|.+.+-.-.+-+-..+++++|+..-.+..+.+. ....++-...=++-|+.|.|.++.+
T Consensus 27 vlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDR 88 (92)
T 1j0g_A 27 VLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDR 88 (92)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCS
T ss_pred EEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccc
Confidence 578999999999999999999999988777765544 5667777777778899999998753
No 346
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=22.17 E-value=1.1e+02 Score=32.67 Aligned_cols=45 Identities=22% Similarity=0.238 Sum_probs=37.5
Q ss_pred ceeEEEccCCceEEEEeccCccHHHHHHHhccccCCCCC-ceeEEe
Q 009518 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF 349 (533)
Q Consensus 305 ~~i~v~~~~g~~~~~~v~~~~ti~~lK~~i~~~~~ip~~-~q~L~~ 349 (533)
+.+-|..++|...++.+++++|+.++-..++.+.|+... -..|++
T Consensus 264 i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 456678899999999999999999999999999998543 344655
No 347
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=22.11 E-value=1.1e+02 Score=23.69 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=32.9
Q ss_pred CCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEE-EEcCe
Q 009518 466 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK 504 (533)
Q Consensus 466 g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L-~~~g~ 504 (533)
.+.+++.|++.++=.++|+.|+..+++.+..-.- ...|+
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 3689999999999999999999999999987653 44454
No 348
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=21.70 E-value=1.5e+02 Score=27.88 Aligned_cols=56 Identities=20% Similarity=0.229 Sum_probs=40.2
Q ss_pred eEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc-------CeecCCCCcccc
Q 009518 459 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLAD 514 (533)
Q Consensus 459 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~-------g~~L~d~~tL~~ 514 (533)
+.|-..+|....+.|++++|+.||-..+..+.+.+.+.-.-++. -++|+|...+.+
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~d 96 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVE 96 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHH
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHH
Confidence 44556778899999999999999999998888776554444432 346777655433
No 349
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=21.65 E-value=2.9e+02 Score=22.84 Aligned_cols=74 Identities=19% Similarity=0.266 Sum_probs=51.3
Q ss_pred eEEEEcCCCcEEE-EEecCcccHHHHHHHHHhhhCCCCcc----ceEE--EccEEcC-CCCCccccccccccccceEEEe
Q 009518 2 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQ----QRLI--FAGKQLE-DGRTLADYNIQKESTLHLVLRL 73 (533)
Q Consensus 2 ~i~~~~~~g~~~~-~~v~~~dtv~~ik~ki~~~~~i~~~~----q~l~--~~g~~L~-~~~tl~~y~i~~~sti~l~~~~ 73 (533)
.|.++..+|.-+. |.+...|....+-++.-+|+++..+. +-+. =.|++|. .+..=-.|-+.......+++|.
T Consensus 29 RVsvd~~~gnlYKSIllTsqDrtp~VI~rAL~Khnl~~~~~~~y~LvQ~Lp~~kEL~IPd~ANVFYAM~~sa~~dFvLR~ 108 (140)
T 3kh0_A 29 RVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPENANVFYAMNSTANYDFVLKK 108 (140)
T ss_dssp EEEEECSSSEEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEETTEEEECCTTCBHHHHSCTTSCCEEEEEE
T ss_pred EEEEEcCCCcEEEEEEeecccccHHHHHHHHHHhCCCCCchhceEEEEEcCCCCeEecCCCCceEEEecCCCCccEEEee
Confidence 4678888887665 99999999999999999999987653 1111 1456542 2222225667666778888876
Q ss_pred cC
Q 009518 74 RG 75 (533)
Q Consensus 74 ~~ 75 (533)
++
T Consensus 109 k~ 110 (140)
T 3kh0_A 109 RT 110 (140)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 350
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=21.43 E-value=77 Score=25.12 Aligned_cols=71 Identities=25% Similarity=0.388 Sum_probs=53.4
Q ss_pred CCeeEEEEcCCCCeEEEEeecCccHHHHHHHhhhhcCCCCC--CeeEEecCc---cccCCccccccccCCCceEEEE
Q 009518 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--QQRLIFAGK---QLEDGRTLADYNIQKESTLHLV 298 (533)
Q Consensus 227 ~~~~i~V~~~~g~~i~~~v~~~~tV~~lK~~I~~~~gip~~--~q~L~~~g~---~L~d~~tl~~~~i~~~~ti~l~ 298 (533)
....|+|...+ ..+++.|....-|+.|-.++.++..++.+ +..|-.-.+ .+....||..|||+..+.+++-
T Consensus 25 WeL~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 25 WELSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp CCEECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 44566666665 77788888889999999999988877654 455555333 3678889999999998887653
No 351
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=21.43 E-value=5.6e+02 Score=24.79 Aligned_cols=102 Identities=11% Similarity=0.154 Sum_probs=0.0
Q ss_pred CCcHHHHHHHhhcccCCCCcceeEeecCccccCCccccccccccCCeEEEEEEecCCeeeEEEeCCCCEEEEEecC-CCc
Q 009518 400 SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDT 478 (533)
Q Consensus 400 ~~Tv~~lK~~I~~~~~vp~~~q~l~~~g~~l~d~~~L~~~~i~~~~~l~l~~~~~~~m~i~v~~~~g~~~~~~v~~-~~t 478 (533)
+.|+.++.+.|.++ |+. .-.+..+.+......+.+++|...-.+.=.+.+.+ ..|
T Consensus 118 G~T~~e~~~~I~~~----------------------L~~--~~~~P~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~t 173 (359)
T 2j58_A 118 GKTVSQVRQDITSR----------------------LTT--YIESPQVDVSIAAFRSQKVYVTGEVANSGKQAITNIPLT 173 (359)
T ss_dssp TCCHHHHHHHHHHH----------------------HTT--TSSSCCEEEEEEECCSCEEEEEESBSSCEEEECCSSCCB
T ss_pred CCCHHHHHHHHHHH----------------------HHH--hccCCeEEEEEccCCceEEEEEceecCCeEEEeCCCCCc
Q ss_pred HHHHHHHHhhhcCCCC-CcEEEEEcCe--------ecCCCCcccccCCCCCCEEEE
Q 009518 479 IDNVKAKIQDKEGIPP-DQQRLIFAGK--------QLEDGRTLADYNIQKESTLHL 525 (533)
Q Consensus 479 V~~lK~~I~~~~gip~-~~q~L~~~g~--------~L~d~~tL~~~~I~~~~~l~l 525 (533)
|.+.-.+....+.-.- ....|.-+|+ .+.+...-.++-+++||+|++
T Consensus 174 l~~ai~~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~V 229 (359)
T 2j58_A 174 VMDAINAAGGLAADADWRNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFI 229 (359)
T ss_dssp HHHHHHHTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEEEE
T ss_pred HHHHHHHcCCCCcccccceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeEEE
No 352
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=21.33 E-value=1.6e+02 Score=24.28 Aligned_cols=61 Identities=8% Similarity=0.236 Sum_probs=0.0
Q ss_pred cCCeEEEEEecCCcE-------EEEEEcCCCcHHHHHHHHccccCCCCCCeEEE-ecCccc-ccCCcccc
Q 009518 74 RGGMQIFVKTLTGKT-------ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLAD 134 (533)
Q Consensus 74 ~~~~~i~vk~~~g~~-------~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G~~L-~d~~~l~~ 134 (533)
++.+.|.|+...+.. -..-|+.+.||+++..-|.++..+++++-.++ |.+..+ ..+.++++
T Consensus 33 P~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~ 102 (130)
T 2zjd_A 33 PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISE 102 (130)
T ss_dssp TTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHH
T ss_pred CCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHH
No 353
>1ef5_A RGL; RAS-binding domain, RAS, RBD, RA, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: d.15.1.5
Probab=21.33 E-value=1.2e+02 Score=23.86 Aligned_cols=71 Identities=17% Similarity=0.307 Sum_probs=44.0
Q ss_pred eEEEEcCCCcEEE-EEecCcccHHHHHHHHHhhhCCCCcc-ceEEEccEEcCCCCCcc-------ccccccccccceEEE
Q 009518 2 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLA-------DYNIQKESTLHLVLR 72 (533)
Q Consensus 2 ~i~~~~~~g~~~~-~~v~~~dtv~~ik~ki~~~~~i~~~~-q~l~~~g~~L~~~~tl~-------~y~i~~~sti~l~~~ 72 (533)
.|.++..+|.-+- |.+...|....+-.+.-+|+++..+. +..-+ -+.|++++-|. .|-+.......+++|
T Consensus 22 RVs~e~~~g~~YKSIlltsqDrtp~VI~raL~Khnl~~~~~~~y~L-~Q~Lp~~kEL~iPd~aNVFYAm~~~~~~~F~LR 100 (103)
T 1ef5_A 22 RISVEDNNGNMYKSIMLTSQDKTPAVIQRAMSKHNLESDPAEEYEL-VQVISEDKELVIPDSANVFYAMNSQVNFDFILR 100 (103)
T ss_dssp EEEESSCSSCCCCCBCCSSCCCTHHHHHHHTTTTTCCCCSSSSEEE-EEECSSSCCEESSCCCCTTTTTCCCSCEEEEEE
T ss_pred EEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCChhheEE-EEEcCCCCEEecCCCcceEEEEcCCCCccEEEe
Confidence 4566667775443 78899999999999999999986654 22111 25566555332 344444444555554
Q ss_pred e
Q 009518 73 L 73 (533)
Q Consensus 73 ~ 73 (533)
.
T Consensus 101 ~ 101 (103)
T 1ef5_A 101 K 101 (103)
T ss_dssp E
T ss_pred e
Confidence 3
No 354
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=20.93 E-value=1e+02 Score=25.21 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=39.3
Q ss_pred EEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEE-cCeecCCCCccccc---CC-CCCCEEEEEE
Q 009518 469 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY---NI-QKESTLHLVL 527 (533)
Q Consensus 469 ~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~-~g~~L~d~~tL~~~---~I-~~~~~l~l~~ 527 (533)
..+-|+.+.||+++...|..+..+++++-..+| ++.....+.++++. .= ++| -|++..
T Consensus 55 ~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDG-fLY~~Y 117 (125)
T 3m95_A 55 KKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDF-FLYIAF 117 (125)
T ss_dssp CEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTS-CEEEEE
T ss_pred CEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCC-eEEEEe
Confidence 346789999999999999999999988755544 65433445565432 22 344 466554
No 355
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=20.62 E-value=1.7e+02 Score=27.22 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=36.1
Q ss_pred eeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCCCcEEEEEc-------CeecCCCCcc
Q 009518 458 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTL 512 (533)
Q Consensus 458 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~-------g~~L~d~~tL 512 (533)
-|.|-..+|...++.|++++|+.||-..+..+.+.+.+.-.-++. -++|+|...+
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V 71 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELV 71 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBH
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhH
Confidence 345556788899999999999999999998887766555444443 3466665543
No 356
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=20.32 E-value=1.8e+02 Score=30.17 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=40.8
Q ss_pred CCeeeEEEeCCCCEEEEEecCCCcHHHHHHHHhhhcCCCC--CcEEEEEc
Q 009518 455 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFA 502 (533)
Q Consensus 455 ~~m~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~gip~--~~q~L~~~ 502 (533)
.++.+.|..++|....+.+++..|+.+|-..|+...|+.. +.+-|+..
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 3567778889999999999999999999999999999974 56677653
No 357
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=20.31 E-value=74 Score=31.41 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=41.7
Q ss_pred EccCCc----eEEEEeccCccHHHHHHHhccccCCCCCc-eeEEec------cEEcCCCCccccc
Q 009518 310 KTLTGK----TITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA------GKQLEDGRTLADY 363 (533)
Q Consensus 310 ~~~~g~----~~~~~v~~~~ti~~lK~~i~~~~~ip~~~-q~L~~~------g~~L~~~~tl~~y 363 (533)
-.++|. ..++.+++++|++|+-..++++.||.... .-|.+. -.+|+.+.++.+-
T Consensus 13 ~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~l~~~ 77 (375)
T 2al6_A 13 FENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMGVSNV 77 (375)
T ss_dssp CCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSBHHHH
T ss_pred EecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccchhhh
Confidence 345666 99999999999999999999999994333 346652 2589998888653
Done!