Query 009519
Match_columns 533
No_of_seqs 173 out of 1457
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 14:06:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009519.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009519hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1257 NADP+-dependent malic 100.0 4E-197 8E-202 1542.4 40.7 485 25-531 24-510 (582)
2 PRK13529 malate dehydrogenase; 100.0 4E-196 9E-201 1563.8 45.9 495 22-532 7-504 (563)
3 PTZ00317 NADP-dependent malic 100.0 7E-195 1E-199 1553.4 44.7 491 25-532 12-503 (559)
4 PLN03129 NADP-dependent malic 100.0 9E-193 2E-197 1542.4 44.8 483 29-532 39-523 (581)
5 COG0281 SfcA Malic enzyme [Ene 100.0 4E-110 9E-115 869.0 29.3 366 65-529 1-372 (432)
6 PRK12862 malic enzyme; Reviewe 100.0 6E-105 1E-109 889.9 30.2 329 114-530 31-364 (763)
7 PRK07232 bifunctional malic en 100.0 3E-104 6E-109 881.1 30.0 328 114-529 23-355 (752)
8 PRK12861 malic enzyme; Reviewe 100.0 4E-104 9E-109 879.3 30.8 330 114-530 27-360 (764)
9 PF03949 Malic_M: Malic enzyme 100.0 2.6E-87 5.6E-92 666.3 17.4 227 296-531 1-227 (255)
10 cd05312 NAD_bind_1_malic_enz N 100.0 1.2E-84 2.6E-89 654.3 24.0 227 296-532 1-227 (279)
11 cd00762 NAD_bind_malic_enz NAD 100.0 1.9E-84 4.1E-89 645.2 23.5 225 296-532 1-228 (254)
12 PF00390 malic: Malic enzyme, 100.0 2.2E-83 4.8E-88 609.7 6.5 181 106-286 1-182 (182)
13 cd05311 NAD_bind_2_malic_enz N 100.0 1.7E-50 3.7E-55 395.5 20.2 200 296-532 1-201 (226)
14 cd05191 NAD_bind_amino_acid_DH 98.8 4.9E-08 1.1E-12 82.1 10.3 86 298-444 1-86 (86)
15 PRK05476 S-adenosyl-L-homocyst 98.0 0.00019 4E-09 77.8 15.9 162 241-448 104-303 (425)
16 cd00401 AdoHcyase S-adenosyl-L 97.6 0.001 2.3E-08 71.8 14.2 130 288-459 163-302 (413)
17 PTZ00075 Adenosylhomocysteinas 97.4 0.0062 1.3E-07 67.0 16.5 122 289-447 216-344 (476)
18 TIGR00936 ahcY adenosylhomocys 97.3 0.0023 5.1E-08 69.0 13.0 129 288-458 156-294 (406)
19 PLN02494 adenosylhomocysteinas 97.2 0.0029 6.3E-08 69.5 12.1 131 288-460 215-355 (477)
20 cd05211 NAD_bind_Glu_Leu_Phe_V 97.1 0.0065 1.4E-07 60.2 11.7 138 299-463 2-143 (217)
21 TIGR01035 hemA glutamyl-tRNA r 96.8 0.0079 1.7E-07 64.7 11.0 126 297-455 158-285 (417)
22 PF00670 AdoHcyase_NAD: S-aden 96.8 0.027 5.9E-07 54.0 13.0 143 297-483 3-145 (162)
23 cd05213 NAD_bind_Glutamyl_tRNA 96.7 0.0093 2E-07 61.6 10.4 138 276-448 139-277 (311)
24 PTZ00079 NADP-specific glutama 96.7 0.063 1.4E-06 59.0 16.9 190 243-459 143-366 (454)
25 PLN02477 glutamate dehydrogena 96.6 0.07 1.5E-06 57.9 15.8 191 243-459 112-324 (410)
26 cd01080 NAD_bind_m-THF_DH_Cycl 96.5 0.013 2.9E-07 56.0 9.0 86 310-448 34-120 (168)
27 PRK14982 acyl-ACP reductase; P 96.4 0.012 2.6E-07 62.3 8.8 114 299-448 134-250 (340)
28 PRK00045 hemA glutamyl-tRNA re 96.4 0.012 2.6E-07 63.4 8.9 120 299-448 162-284 (423)
29 PF01488 Shikimate_DH: Shikima 96.4 0.0021 4.6E-08 58.5 2.8 105 319-448 8-113 (135)
30 PRK08306 dipicolinate synthase 96.3 0.023 5E-07 58.5 10.2 130 304-472 136-266 (296)
31 PRK14192 bifunctional 5,10-met 96.3 0.017 3.8E-07 59.5 8.7 109 298-459 137-250 (283)
32 TIGR02853 spore_dpaA dipicolin 96.1 0.14 3.1E-06 52.7 14.3 175 253-472 84-265 (287)
33 PRK14031 glutamate dehydrogena 96.0 0.23 4.9E-06 54.6 16.2 186 243-447 134-347 (444)
34 PRK09414 glutamate dehydrogena 96.0 0.16 3.4E-06 55.8 14.8 192 243-459 138-357 (445)
35 cd05313 NAD_bind_2_Glu_DH NAD( 95.9 0.08 1.7E-06 54.1 11.5 139 298-459 16-167 (254)
36 PRK14030 glutamate dehydrogena 95.9 0.46 1E-05 52.3 17.8 194 243-459 134-357 (445)
37 cd01076 NAD_bind_1_Glu_DH NAD( 95.7 0.058 1.3E-06 53.9 9.4 130 297-448 8-141 (227)
38 cd01075 NAD_bind_Leu_Phe_Val_D 95.7 0.085 1.8E-06 51.4 10.3 122 299-459 5-129 (200)
39 PRK14175 bifunctional 5,10-met 95.5 0.034 7.3E-07 57.7 7.2 97 298-447 136-233 (286)
40 COG0373 HemA Glutamyl-tRNA red 95.5 0.036 7.7E-07 60.2 7.4 181 201-448 94-278 (414)
41 PLN00203 glutamyl-tRNA reducta 95.3 0.057 1.2E-06 60.2 8.3 144 276-448 225-373 (519)
42 cd05197 GH4_glycoside_hydrolas 95.2 0.027 5.9E-07 61.1 5.4 130 324-470 1-166 (425)
43 PRK13940 glutamyl-tRNA reducta 95.1 0.032 6.8E-07 60.5 5.6 134 276-448 142-277 (414)
44 PLN00106 malate dehydrogenase 95.0 0.16 3.4E-06 53.5 10.1 143 305-471 4-165 (323)
45 PRK00676 hemA glutamyl-tRNA re 94.9 0.055 1.2E-06 57.4 6.5 126 276-448 136-265 (338)
46 TIGR00518 alaDH alanine dehydr 94.8 0.094 2E-06 55.8 7.9 231 156-445 19-268 (370)
47 cd05296 GH4_P_beta_glucosidase 94.5 0.055 1.2E-06 58.7 5.4 130 324-470 1-166 (419)
48 TIGR02354 thiF_fam2 thiamine b 94.3 0.057 1.2E-06 52.8 4.7 110 317-453 18-128 (200)
49 PRK10792 bifunctional 5,10-met 94.2 0.32 6.9E-06 50.6 10.0 107 300-459 139-251 (285)
50 PRK06129 3-hydroxyacyl-CoA deh 93.9 0.35 7.6E-06 49.7 9.7 37 484-520 184-220 (308)
51 PRK14191 bifunctional 5,10-met 93.8 0.17 3.7E-06 52.6 7.2 91 301-444 138-229 (285)
52 PTZ00117 malate dehydrogenase; 93.7 0.21 4.6E-06 52.0 7.8 130 323-474 5-151 (319)
53 PRK12549 shikimate 5-dehydroge 93.6 0.11 2.3E-06 53.4 5.3 90 305-418 112-202 (284)
54 cd01078 NAD_bind_H4MPT_DH NADP 93.5 0.18 3.8E-06 48.1 6.3 123 299-448 7-133 (194)
55 cd05212 NAD_bind_m-THF_DH_Cycl 93.4 0.63 1.4E-05 43.5 9.7 81 302-428 10-91 (140)
56 PTZ00082 L-lactate dehydrogena 93.3 0.21 4.7E-06 52.2 7.1 129 323-473 6-156 (321)
57 PRK09424 pntA NAD(P) transhydr 93.2 0.27 5.9E-06 54.8 8.1 108 324-454 166-296 (509)
58 cd00650 LDH_MDH_like NAD-depen 93.2 0.12 2.6E-06 51.8 4.9 132 326-477 1-150 (263)
59 TIGR01763 MalateDH_bact malate 93.1 0.13 2.8E-06 53.3 5.1 127 324-474 2-147 (305)
60 PRK06223 malate dehydrogenase; 93.0 0.18 3.9E-06 51.5 5.9 126 324-474 3-148 (307)
61 PF00056 Ldh_1_N: lactate/mala 92.9 0.059 1.3E-06 49.7 2.1 113 325-459 2-130 (141)
62 PRK12749 quinate/shikimate deh 92.6 0.2 4.3E-06 51.7 5.5 49 305-367 109-157 (288)
63 cd01079 NAD_bind_m-THF_DH NAD 92.5 0.46 9.9E-06 47.2 7.6 101 303-428 36-147 (197)
64 PF01210 NAD_Gly3P_dh_N: NAD-d 92.3 0.074 1.6E-06 49.5 1.9 97 325-441 1-100 (157)
65 PRK00066 ldh L-lactate dehydro 92.3 0.73 1.6E-05 48.1 9.3 127 324-473 7-150 (315)
66 PRK08328 hypothetical protein; 92.2 0.068 1.5E-06 53.2 1.5 124 282-449 7-132 (231)
67 PRK00257 erythronate-4-phospha 92.2 1 2.3E-05 48.5 10.5 163 299-508 95-265 (381)
68 PRK14027 quinate/shikimate deh 92.2 0.22 4.7E-06 51.4 5.2 57 289-367 104-160 (283)
69 cd01065 NAD_bind_Shikimate_DH 92.2 0.28 6.1E-06 44.3 5.4 113 305-448 4-121 (155)
70 PRK08293 3-hydroxybutyryl-CoA 92.1 0.19 4.1E-06 51.0 4.6 135 324-478 4-149 (287)
71 PRK14176 bifunctional 5,10-met 92.0 0.45 9.8E-06 49.6 7.3 83 300-428 144-227 (287)
72 PF00208 ELFV_dehydrog: Glutam 92.0 0.23 5.1E-06 50.2 5.1 137 294-448 5-152 (244)
73 PF03807 F420_oxidored: NADP o 92.0 0.25 5.4E-06 41.4 4.5 95 325-446 1-96 (96)
74 PRK02842 light-independent pro 91.9 0.8 1.7E-05 49.5 9.4 185 153-416 176-368 (427)
75 PTZ00325 malate dehydrogenase; 91.9 0.86 1.9E-05 48.0 9.3 107 322-448 7-129 (321)
76 TIGR01809 Shik-DH-AROM shikima 91.9 0.26 5.7E-06 50.4 5.4 108 289-428 100-210 (282)
77 PF01262 AlaDh_PNT_C: Alanine 91.8 0.11 2.4E-06 48.9 2.4 95 321-431 18-130 (168)
78 PF00899 ThiF: ThiF family; I 91.7 0.21 4.5E-06 45.1 3.9 36 323-369 2-37 (135)
79 COG1486 CelF Alpha-galactosida 91.6 0.16 3.4E-06 55.8 3.6 134 322-472 2-172 (442)
80 PRK14189 bifunctional 5,10-met 91.6 0.48 1.1E-05 49.3 6.9 83 300-428 138-221 (285)
81 PLN02928 oxidoreductase family 91.5 3 6.4E-05 44.2 12.9 174 297-500 120-314 (347)
82 PF02826 2-Hacid_dh_C: D-isome 91.5 0.61 1.3E-05 44.3 7.1 145 313-498 29-177 (178)
83 cd05291 HicDH_like L-2-hydroxy 91.4 0.46 1E-05 49.0 6.7 127 325-473 2-145 (306)
84 PRK14619 NAD(P)H-dependent gly 91.2 1.3 2.8E-05 45.6 9.6 32 324-367 5-36 (308)
85 PRK12548 shikimate 5-dehydroge 91.2 0.35 7.5E-06 49.7 5.5 57 289-367 103-159 (289)
86 TIGR00561 pntA NAD(P) transhyd 91.0 0.85 1.8E-05 51.1 8.6 174 227-431 80-275 (511)
87 PRK07066 3-hydroxybutyryl-CoA 91.0 0.21 4.5E-06 52.6 3.6 110 401-519 103-220 (321)
88 PRK14194 bifunctional 5,10-met 91.0 0.63 1.4E-05 48.9 7.1 94 300-446 139-234 (301)
89 PRK09260 3-hydroxybutyryl-CoA 90.9 0.52 1.1E-05 47.8 6.4 32 324-367 2-33 (288)
90 PRK15076 alpha-galactosidase; 90.9 0.31 6.7E-06 53.1 4.9 133 324-474 2-174 (431)
91 PRK08374 homoserine dehydrogen 90.8 1.6 3.4E-05 46.1 10.0 109 324-441 3-120 (336)
92 PRK12921 2-dehydropantoate 2-r 90.7 0.78 1.7E-05 46.2 7.4 103 325-448 2-106 (305)
93 PRK14178 bifunctional 5,10-met 90.5 0.57 1.2E-05 48.7 6.3 92 300-444 132-224 (279)
94 PRK05086 malate dehydrogenase; 90.3 1.3 2.7E-05 46.3 8.7 131 324-474 1-150 (312)
95 PRK00258 aroE shikimate 5-dehy 90.3 0.49 1.1E-05 48.1 5.6 49 305-367 107-156 (278)
96 COG0169 AroE Shikimate 5-dehyd 90.3 0.46 1E-05 49.3 5.4 47 306-366 110-158 (283)
97 PRK14183 bifunctional 5,10-met 90.1 0.82 1.8E-05 47.6 7.0 84 299-428 136-220 (281)
98 PRK14190 bifunctional 5,10-met 90.1 0.83 1.8E-05 47.6 7.1 83 300-428 138-221 (284)
99 PF02882 THF_DHG_CYH_C: Tetrah 90.1 1.2 2.6E-05 42.6 7.7 83 301-429 17-100 (160)
100 cd05297 GH4_alpha_glucosidase_ 90.0 0.51 1.1E-05 51.1 5.7 130 325-473 2-171 (423)
101 PLN03139 formate dehydrogenase 89.9 7.2 0.00016 42.3 14.2 227 261-530 117-368 (386)
102 PRK08605 D-lactate dehydrogena 89.5 2.7 5.8E-05 44.2 10.4 167 320-528 143-324 (332)
103 TIGR00872 gnd_rel 6-phosphoglu 89.3 2.6 5.6E-05 43.3 9.9 95 325-448 2-97 (298)
104 PRK15438 erythronate-4-phospha 89.3 2.7 5.9E-05 45.4 10.4 107 298-445 94-208 (378)
105 PRK09599 6-phosphogluconate de 89.2 1.6 3.4E-05 44.8 8.3 96 325-448 2-98 (301)
106 PRK14179 bifunctional 5,10-met 89.0 1.1 2.3E-05 46.8 6.9 92 300-444 138-230 (284)
107 COG0334 GdhA Glutamate dehydro 88.9 9.1 0.0002 42.0 14.1 199 241-468 110-332 (411)
108 cd00704 MDH Malate dehydrogena 88.8 2.1 4.5E-05 45.0 9.0 120 325-461 2-140 (323)
109 PRK00094 gpsA NAD(P)H-dependen 88.7 0.98 2.1E-05 45.8 6.3 104 325-448 3-109 (325)
110 PRK14184 bifunctional 5,10-met 88.3 1.1 2.5E-05 46.7 6.6 96 300-444 137-233 (286)
111 PRK12550 shikimate 5-dehydroge 88.3 0.78 1.7E-05 47.1 5.4 56 289-367 100-155 (272)
112 PRK12490 6-phosphogluconate de 88.1 2 4.4E-05 44.0 8.3 96 325-448 2-98 (299)
113 PRK06487 glycerate dehydrogena 88.1 8.5 0.00019 40.2 12.9 196 288-530 89-312 (317)
114 PRK14174 bifunctional 5,10-met 88.1 1.8 3.8E-05 45.4 7.8 95 301-444 140-235 (295)
115 KOG0029 Amine oxidase [Seconda 88.1 0.23 4.9E-06 55.3 1.4 34 324-360 16-49 (501)
116 PRK08644 thiamine biosynthesis 87.8 0.46 9.9E-06 46.9 3.2 37 317-367 25-61 (212)
117 TIGR02356 adenyl_thiF thiazole 87.8 0.47 1E-05 46.2 3.2 38 316-367 17-54 (202)
118 PRK07574 formate dehydrogenase 87.8 9.8 0.00021 41.3 13.4 202 261-500 110-336 (385)
119 COG0111 SerA Phosphoglycerate 87.7 3.2 6.9E-05 43.9 9.5 97 301-430 105-223 (324)
120 cd01339 LDH-like_MDH L-lactate 87.7 1 2.2E-05 46.1 5.8 123 326-473 1-143 (300)
121 PRK14172 bifunctional 5,10-met 87.7 1.7 3.6E-05 45.3 7.3 83 300-428 138-221 (278)
122 PRK14177 bifunctional 5,10-met 87.6 1.7 3.6E-05 45.4 7.3 82 301-428 140-222 (284)
123 PLN02602 lactate dehydrogenase 87.5 1.8 4E-05 46.1 7.7 129 324-475 38-184 (350)
124 cd00757 ThiF_MoeB_HesA_family 87.5 0.49 1.1E-05 46.8 3.2 37 317-367 18-54 (228)
125 cd05298 GH4_GlvA_pagL_like Gly 87.5 0.69 1.5E-05 50.7 4.6 133 324-474 1-171 (437)
126 TIGR02992 ectoine_eutC ectoine 87.1 3.6 7.8E-05 43.0 9.5 106 324-457 130-238 (326)
127 PRK14170 bifunctional 5,10-met 87.1 1.8 3.8E-05 45.2 7.1 83 300-428 137-220 (284)
128 TIGR03140 AhpF alkyl hydropero 87.0 1.2 2.7E-05 49.0 6.3 87 254-345 137-234 (515)
129 PRK06035 3-hydroxyacyl-CoA deh 87.0 3.6 7.8E-05 41.8 9.2 32 324-367 4-35 (291)
130 TIGR02355 moeB molybdopterin s 87.0 0.55 1.2E-05 47.2 3.3 38 316-367 20-57 (240)
131 PRK06522 2-dehydropantoate 2-r 87.0 1.3 2.8E-05 44.4 5.9 102 325-448 2-104 (304)
132 PRK06130 3-hydroxybutyryl-CoA 86.9 3 6.6E-05 42.5 8.7 31 324-366 5-35 (311)
133 PRK08410 2-hydroxyacid dehydro 86.7 14 0.00031 38.5 13.6 195 262-500 60-286 (311)
134 PRK12475 thiamine/molybdopteri 86.6 0.58 1.3E-05 49.4 3.4 39 316-368 20-58 (338)
135 PRK08223 hypothetical protein; 86.5 0.34 7.5E-06 50.4 1.6 128 279-444 4-152 (287)
136 KOG0685 Flavin-containing amin 86.3 0.29 6.4E-06 54.1 1.0 22 324-345 22-43 (498)
137 PRK14166 bifunctional 5,10-met 86.3 2.1 4.7E-05 44.6 7.2 130 253-428 74-220 (282)
138 PRK12480 D-lactate dehydrogena 86.2 6.4 0.00014 41.5 10.8 182 298-524 105-318 (330)
139 TIGR02279 PaaC-3OHAcCoADH 3-hy 86.0 4.7 0.0001 45.0 10.1 105 405-520 108-221 (503)
140 PRK13243 glyoxylate reductase; 86.0 17 0.00037 38.3 13.8 202 262-504 64-295 (333)
141 cd05294 LDH-like_MDH_nadp A la 85.9 4.1 8.8E-05 42.4 9.1 127 325-473 2-149 (309)
142 PRK15116 sulfur acceptor prote 85.9 1.6 3.5E-05 45.0 6.1 39 317-369 27-65 (268)
143 PRK12439 NAD(P)H-dependent gly 85.9 1.1 2.4E-05 46.9 5.0 103 324-448 8-115 (341)
144 PF01113 DapB_N: Dihydrodipico 85.8 5 0.00011 36.1 8.5 98 324-444 1-99 (124)
145 cd01979 Pchlide_reductase_N Pc 85.8 4.4 9.5E-05 43.4 9.5 130 149-345 162-298 (396)
146 cd01485 E1-1_like Ubiquitin ac 85.8 0.68 1.5E-05 45.1 3.1 78 317-414 16-94 (198)
147 PRK14187 bifunctional 5,10-met 85.8 2.4 5.2E-05 44.5 7.3 83 300-428 140-223 (294)
148 PRK07688 thiamine/molybdopteri 85.7 1.4 3E-05 46.7 5.6 39 316-368 20-58 (339)
149 PRK07531 bifunctional 3-hydrox 85.6 1.7 3.7E-05 48.0 6.5 31 324-366 5-35 (495)
150 PF07992 Pyr_redox_2: Pyridine 85.5 0.79 1.7E-05 42.5 3.3 31 325-367 1-31 (201)
151 cd01483 E1_enzyme_family Super 85.3 0.78 1.7E-05 41.6 3.1 121 325-470 1-121 (143)
152 PRK07634 pyrroline-5-carboxyla 85.3 2.3 5E-05 41.6 6.6 100 323-448 4-103 (245)
153 PRK14188 bifunctional 5,10-met 85.3 2 4.3E-05 45.0 6.4 92 300-444 138-230 (296)
154 COG0240 GpsA Glycerol-3-phosph 85.2 1.7 3.6E-05 46.3 5.9 100 324-444 2-105 (329)
155 PRK14193 bifunctional 5,10-met 85.1 2.6 5.5E-05 44.1 7.1 85 300-428 138-223 (284)
156 PRK08229 2-dehydropantoate 2-r 84.9 3.7 8E-05 42.3 8.2 105 324-449 3-112 (341)
157 cd01487 E1_ThiF_like E1_ThiF_l 84.9 0.84 1.8E-05 43.6 3.3 32 325-367 1-32 (174)
158 PLN02516 methylenetetrahydrofo 84.9 2.6 5.7E-05 44.3 7.1 84 299-428 146-230 (299)
159 PRK14171 bifunctional 5,10-met 84.9 2.7 5.8E-05 44.0 7.1 130 253-428 76-222 (288)
160 PRK14168 bifunctional 5,10-met 84.9 2.6 5.7E-05 44.2 7.1 98 298-444 139-237 (297)
161 PRK05600 thiamine biosynthesis 84.8 0.68 1.5E-05 49.6 2.8 39 316-368 37-75 (370)
162 PRK07679 pyrroline-5-carboxyla 84.8 5.1 0.00011 40.6 9.0 24 322-345 2-25 (279)
163 PRK05690 molybdopterin biosynt 84.8 0.87 1.9E-05 45.8 3.5 38 316-367 28-65 (245)
164 PRK06436 glycerate dehydrogena 84.7 11 0.00023 39.5 11.4 135 320-499 119-257 (303)
165 PRK07680 late competence prote 84.6 2.2 4.7E-05 43.0 6.2 98 325-448 2-100 (273)
166 cd00755 YgdL_like Family of ac 84.4 0.84 1.8E-05 45.9 3.2 36 322-368 10-45 (231)
167 PRK14169 bifunctional 5,10-met 84.2 3 6.6E-05 43.5 7.2 84 299-428 135-219 (282)
168 PRK15317 alkyl hydroperoxide r 84.2 1.8 3.9E-05 47.7 5.9 94 257-367 139-243 (517)
169 PTZ00345 glycerol-3-phosphate 84.2 2 4.4E-05 46.1 6.1 22 324-345 12-33 (365)
170 cd01337 MDH_glyoxysomal_mitoch 84.1 4.8 0.0001 42.3 8.7 129 325-474 2-149 (310)
171 cd05293 LDH_1 A subgroup of L- 84.1 3.9 8.5E-05 42.8 8.0 127 324-473 4-148 (312)
172 PRK14618 NAD(P)H-dependent gly 84.1 2.6 5.5E-05 43.6 6.6 99 324-446 5-106 (328)
173 PRK05442 malate dehydrogenase; 83.9 3.8 8.2E-05 43.3 7.9 135 324-476 5-161 (326)
174 cd01336 MDH_cytoplasmic_cytoso 83.9 8.8 0.00019 40.4 10.6 136 324-476 3-159 (325)
175 TIGR03366 HpnZ_proposed putati 83.7 8.1 0.00018 38.6 9.8 47 305-366 107-153 (280)
176 PRK14182 bifunctional 5,10-met 83.7 3.4 7.3E-05 43.1 7.3 83 300-428 137-220 (282)
177 cd01492 Aos1_SUMO Ubiquitin ac 83.7 0.86 1.9E-05 44.4 2.8 92 316-430 17-108 (197)
178 TIGR00507 aroE shikimate 5-deh 83.4 2 4.3E-05 43.4 5.3 47 305-366 102-148 (270)
179 PRK14180 bifunctional 5,10-met 83.3 3.6 7.7E-05 43.0 7.2 130 253-428 75-221 (282)
180 TIGR01381 E1_like_apg7 E1-like 83.2 0.92 2E-05 52.2 3.1 38 321-369 336-373 (664)
181 cd01491 Ube1_repeat1 Ubiquitin 83.2 1 2.3E-05 46.8 3.3 118 324-470 20-137 (286)
182 PRK14851 hypothetical protein; 83.2 3.1 6.7E-05 48.2 7.4 125 316-463 39-194 (679)
183 PRK08762 molybdopterin biosynt 83.2 0.96 2.1E-05 48.1 3.1 37 317-367 132-168 (376)
184 PRK06153 hypothetical protein; 83.1 1.3 2.8E-05 48.2 4.0 93 316-430 172-264 (393)
185 PRK11790 D-3-phosphoglycerate 83.0 38 0.00083 36.8 15.2 220 261-526 71-316 (409)
186 PRK14173 bifunctional 5,10-met 83.0 3.6 7.8E-05 43.0 7.1 83 300-428 135-218 (287)
187 PRK14181 bifunctional 5,10-met 82.9 3.6 7.9E-05 43.0 7.1 89 298-428 131-220 (287)
188 PRK09310 aroDE bifunctional 3- 82.7 1.9 4.1E-05 47.6 5.3 47 305-366 317-363 (477)
189 COG0039 Mdh Malate/lactate deh 82.5 3.6 7.8E-05 43.5 7.0 117 324-461 1-132 (313)
190 PRK14620 NAD(P)H-dependent gly 82.3 2.7 5.8E-05 43.3 5.9 31 325-367 2-32 (326)
191 KOG2337 Ubiquitin activating E 82.2 1 2.2E-05 50.5 3.0 49 321-380 338-388 (669)
192 PRK07502 cyclohexadienyl dehyd 82.2 6.1 0.00013 40.5 8.4 34 324-367 7-40 (307)
193 PRK14167 bifunctional 5,10-met 81.8 3.9 8.5E-05 42.9 6.9 95 301-444 138-233 (297)
194 PRK05597 molybdopterin biosynt 81.8 1.3 2.8E-05 47.0 3.5 39 316-368 24-62 (355)
195 PLN02616 tetrahydrofolate dehy 81.5 4 8.6E-05 44.1 6.9 83 300-428 211-294 (364)
196 PRK15469 ghrA bifunctional gly 81.4 33 0.00071 36.0 13.6 162 320-529 133-300 (312)
197 cd05290 LDH_3 A subgroup of L- 81.3 4.7 0.0001 42.1 7.3 131 325-476 1-150 (307)
198 PF13738 Pyr_redox_3: Pyridine 81.0 1.5 3.2E-05 40.9 3.2 30 327-367 1-30 (203)
199 PRK11880 pyrroline-5-carboxyla 80.8 7.3 0.00016 38.8 8.2 121 324-479 3-124 (267)
200 COG0686 Ald Alanine dehydrogen 80.6 1.4 3.1E-05 46.9 3.2 107 324-456 169-290 (371)
201 TIGR01772 MDH_euk_gproteo mala 80.4 5.4 0.00012 41.9 7.4 131 325-476 1-150 (312)
202 PF03446 NAD_binding_2: NAD bi 80.4 1.5 3.3E-05 40.8 3.1 95 324-448 2-98 (163)
203 PRK14186 bifunctional 5,10-met 80.3 5.1 0.00011 42.1 7.2 83 300-428 138-221 (297)
204 PRK09880 L-idonate 5-dehydroge 80.3 19 0.00041 37.0 11.3 118 308-458 159-280 (343)
205 PRK14185 bifunctional 5,10-met 79.8 5.2 0.00011 42.0 7.0 87 300-428 137-224 (293)
206 PF02056 Glyco_hydro_4: Family 79.8 1.4 3E-05 43.2 2.7 110 325-448 1-148 (183)
207 TIGR01915 npdG NADPH-dependent 79.8 3.4 7.5E-05 40.4 5.4 102 325-449 2-106 (219)
208 PRK13581 D-3-phosphoglycerate 79.8 52 0.0011 37.0 15.2 222 262-529 61-305 (526)
209 TIGR01327 PGDH D-3-phosphoglyc 79.7 9.1 0.0002 42.8 9.3 198 263-503 60-283 (525)
210 PF00070 Pyr_redox: Pyridine n 79.2 2.5 5.5E-05 34.6 3.7 35 325-371 1-35 (80)
211 PF02737 3HCDH_N: 3-hydroxyacy 79.2 1.8 3.9E-05 41.5 3.2 104 325-445 1-113 (180)
212 TIGR03376 glycerol3P_DH glycer 78.8 4 8.6E-05 43.4 5.9 20 325-344 1-20 (342)
213 TIGR01285 nifN nitrogenase mol 78.8 9.4 0.0002 41.7 8.9 82 309-416 300-381 (432)
214 PLN02897 tetrahydrofolate dehy 78.5 5.8 0.00013 42.6 7.0 83 300-428 194-277 (345)
215 PLN02306 hydroxypyruvate reduc 78.5 13 0.00028 40.3 9.7 177 320-529 162-347 (386)
216 PLN02688 pyrroline-5-carboxyla 78.4 6.7 0.00015 39.0 7.1 21 325-345 2-22 (266)
217 PRK09754 phenylpropionate diox 78.4 2.6 5.7E-05 44.5 4.4 36 322-367 2-37 (396)
218 PRK07411 hypothetical protein; 78.3 1.7 3.7E-05 46.7 3.1 38 316-367 34-71 (390)
219 PRK06141 ornithine cyclodeamin 78.2 13 0.00028 38.7 9.4 106 324-456 126-232 (314)
220 PRK06270 homoserine dehydrogen 78.2 19 0.00041 38.0 10.7 110 324-441 3-123 (341)
221 PRK10886 DnaA initiator-associ 78.1 7.1 0.00015 38.4 7.0 23 324-347 42-64 (196)
222 TIGR01758 MDH_euk_cyt malate d 78.0 11 0.00023 39.9 8.7 137 325-478 1-158 (324)
223 PRK06249 2-dehydropantoate 2-r 78.0 4.9 0.00011 41.4 6.1 104 324-448 6-110 (313)
224 PF01494 FAD_binding_3: FAD bi 78.0 1.8 3.9E-05 43.0 2.9 35 324-370 2-36 (356)
225 PRK07878 molybdopterin biosynt 77.9 1.8 3.8E-05 46.6 3.0 38 316-367 38-75 (392)
226 cd01486 Apg7 Apg7 is an E1-lik 76.8 2.2 4.8E-05 45.0 3.3 32 325-367 1-32 (307)
227 cd00300 LDH_like L-lactate deh 76.8 7.1 0.00015 40.3 7.0 126 326-473 1-143 (300)
228 TIGR01292 TRX_reduct thioredox 76.8 2.1 4.6E-05 42.1 3.0 31 325-367 2-32 (300)
229 TIGR02371 ala_DH_arch alanine 76.7 13 0.00029 38.9 9.0 106 324-457 129-236 (325)
230 PTZ00142 6-phosphogluconate de 76.5 5 0.00011 44.5 6.0 102 324-447 2-104 (470)
231 cd05292 LDH_2 A subgroup of L- 76.3 11 0.00024 39.2 8.2 128 325-475 2-146 (308)
232 COG0190 FolD 5,10-methylene-te 76.3 5.6 0.00012 41.6 6.0 132 252-429 73-220 (283)
233 PRK05808 3-hydroxybutyryl-CoA 75.9 11 0.00025 38.0 8.0 31 324-366 4-34 (282)
234 PRK01710 murD UDP-N-acetylmura 75.7 15 0.00032 40.0 9.3 32 324-367 15-46 (458)
235 PF05834 Lycopene_cycl: Lycope 75.5 3.2 7E-05 43.8 4.1 35 326-370 2-36 (374)
236 cd01484 E1-2_like Ubiquitin ac 75.2 2.7 5.9E-05 42.4 3.3 32 325-367 1-32 (234)
237 PRK05479 ketol-acid reductoiso 75.1 8.9 0.00019 40.8 7.2 30 316-345 10-39 (330)
238 PRK06932 glycerate dehydrogena 75.0 28 0.0006 36.5 10.8 142 319-501 143-290 (314)
239 COG5322 Predicted dehydrogenas 74.5 4.5 9.8E-05 42.6 4.7 46 297-345 144-190 (351)
240 PRK08291 ectoine utilization p 74.5 14 0.00031 38.6 8.5 106 324-456 133-240 (330)
241 cd01338 MDH_choloroplast_like 74.0 16 0.00035 38.5 8.8 129 324-469 3-153 (322)
242 PLN02520 bifunctional 3-dehydr 73.9 5 0.00011 45.0 5.3 35 317-366 376-410 (529)
243 TIGR01408 Ube1 ubiquitin-activ 73.9 2.1 4.5E-05 51.7 2.5 43 316-367 415-457 (1008)
244 PRK07340 ornithine cyclodeamin 73.8 26 0.00056 36.4 10.2 104 324-457 126-231 (304)
245 TIGR01759 MalateDH-SF1 malate 73.7 21 0.00046 37.7 9.6 121 324-461 4-143 (323)
246 PRK06823 ornithine cyclodeamin 73.6 20 0.00043 37.7 9.3 108 324-459 129-238 (315)
247 TIGR02622 CDP_4_6_dhtase CDP-g 73.3 3.3 7.2E-05 42.6 3.5 105 323-444 4-127 (349)
248 TIGR01283 nifE nitrogenase mol 72.5 7.1 0.00015 42.7 6.0 190 151-416 206-403 (456)
249 cd01488 Uba3_RUB Ubiquitin act 72.2 3.2 6.9E-05 43.4 3.1 32 325-367 1-32 (291)
250 PRK12409 D-amino acid dehydrog 71.9 3.5 7.6E-05 43.3 3.3 33 324-368 2-34 (410)
251 PRK06475 salicylate hydroxylas 71.7 3.3 7.3E-05 43.6 3.1 22 323-344 2-23 (400)
252 TIGR00873 gnd 6-phosphoglucona 71.2 13 0.00028 41.2 7.7 99 325-446 1-100 (467)
253 cd01489 Uba2_SUMO Ubiquitin ac 70.6 4.4 9.4E-05 42.8 3.7 32 325-367 1-32 (312)
254 COG0345 ProC Pyrroline-5-carbo 70.2 31 0.00068 35.8 9.7 35 324-366 2-36 (266)
255 TIGR02028 ChlP geranylgeranyl 70.1 3.7 7.9E-05 43.7 3.0 31 325-367 2-32 (398)
256 cd00377 ICL_PEPM Members of th 69.8 1.3E+02 0.0027 30.5 13.8 50 409-465 174-223 (243)
257 PRK05732 2-octaprenyl-6-methox 69.8 4.2 9.1E-05 42.1 3.3 36 323-367 3-38 (395)
258 PRK07236 hypothetical protein; 69.8 4.3 9.4E-05 42.5 3.4 24 322-345 5-28 (386)
259 PRK14476 nitrogenase molybdenu 69.7 20 0.00043 39.5 8.6 22 324-345 312-333 (455)
260 PLN02172 flavin-containing mon 69.6 4.4 9.6E-05 44.5 3.6 22 323-344 10-31 (461)
261 PRK07589 ornithine cyclodeamin 69.5 29 0.00063 37.1 9.5 106 324-457 130-239 (346)
262 TIGR02023 BchP-ChlP geranylger 69.2 4 8.7E-05 42.9 3.1 31 325-367 2-32 (388)
263 PRK06184 hypothetical protein; 69.2 4.3 9.4E-05 44.3 3.4 34 323-368 3-36 (502)
264 KOG2250 Glutamate/leucine/phen 69.0 46 0.00099 37.6 11.1 194 244-460 156-380 (514)
265 PRK13403 ketol-acid reductoiso 68.7 6.8 0.00015 41.9 4.6 68 316-413 9-76 (335)
266 PRK04176 ribulose-1,5-biphosph 68.6 2.8 6.2E-05 42.4 1.8 35 323-369 25-59 (257)
267 PF01266 DAO: FAD dependent ox 68.4 5.3 0.00012 39.7 3.6 33 325-369 1-33 (358)
268 TIGR01505 tartro_sem_red 2-hyd 68.4 13 0.00029 37.6 6.6 31 325-367 1-31 (291)
269 cd08237 ribitol-5-phosphate_DH 68.3 95 0.0021 32.0 12.9 112 324-469 165-279 (341)
270 PRK06928 pyrroline-5-carboxyla 68.1 12 0.00026 38.1 6.1 35 324-367 2-37 (277)
271 PRK06847 hypothetical protein; 68.1 4.8 0.0001 41.4 3.3 21 324-344 5-25 (375)
272 COG2072 TrkA Predicted flavopr 67.8 5.1 0.00011 43.7 3.6 34 324-368 9-42 (443)
273 TIGR01470 cysG_Nterm siroheme 67.3 5.6 0.00012 39.2 3.4 34 321-366 7-40 (205)
274 PRK04965 NADH:flavorubredoxin 67.1 7.2 0.00016 40.8 4.5 35 324-368 3-37 (377)
275 cd01965 Nitrogenase_MoFe_beta_ 67.0 29 0.00062 37.6 9.1 98 324-448 300-400 (428)
276 COG0476 ThiF Dinucleotide-util 66.7 5.3 0.00012 39.9 3.2 38 316-367 26-63 (254)
277 PRK12769 putative oxidoreducta 66.2 5.4 0.00012 45.5 3.5 33 323-367 327-359 (654)
278 PLN02819 lysine-ketoglutarate 66.2 26 0.00057 42.8 9.3 98 323-431 203-325 (1042)
279 PRK11883 protoporphyrinogen ox 66.2 2.9 6.2E-05 44.0 1.3 22 324-345 1-22 (451)
280 PRK07819 3-hydroxybutyryl-CoA 65.9 5.6 0.00012 40.8 3.3 92 403-505 105-208 (286)
281 PRK07233 hypothetical protein; 65.9 4.8 0.0001 42.0 2.9 31 325-367 1-31 (434)
282 PRK12810 gltD glutamate syntha 65.7 5.7 0.00012 43.3 3.5 32 324-367 144-175 (471)
283 PRK06719 precorrin-2 dehydroge 65.7 6.4 0.00014 37.1 3.4 25 321-345 11-35 (157)
284 COG0644 FixC Dehydrogenases (f 65.4 5.9 0.00013 42.0 3.4 35 324-370 4-38 (396)
285 PRK07364 2-octaprenyl-6-methox 65.4 5 0.00011 42.0 2.9 22 324-345 19-40 (415)
286 COG1252 Ndh NADH dehydrogenase 65.4 6 0.00013 43.3 3.5 35 323-367 3-37 (405)
287 PRK15409 bifunctional glyoxyla 65.1 62 0.0014 34.1 10.9 195 288-527 89-310 (323)
288 PF13454 NAD_binding_9: FAD-NA 65.1 6.6 0.00014 36.4 3.3 36 327-369 1-36 (156)
289 PRK07530 3-hydroxybutyryl-CoA 65.0 6.2 0.00013 40.1 3.4 32 324-367 5-36 (292)
290 PRK09126 hypothetical protein; 64.9 5.6 0.00012 41.3 3.1 22 324-345 4-25 (392)
291 TIGR01790 carotene-cycl lycope 64.8 5.3 0.00011 41.5 2.9 31 326-368 2-32 (388)
292 PF13450 NAD_binding_8: NAD(P) 64.8 6.3 0.00014 32.0 2.7 30 328-369 1-30 (68)
293 PLN02268 probable polyamine ox 64.7 2.6 5.6E-05 44.7 0.6 21 325-345 2-22 (435)
294 PRK06718 precorrin-2 dehydroge 64.6 6.8 0.00015 38.4 3.4 34 321-366 8-41 (202)
295 KOG0069 Glyoxylate/hydroxypyru 64.5 1.2E+02 0.0026 32.8 12.8 186 298-530 120-329 (336)
296 PTZ00318 NADH dehydrogenase-li 64.4 5 0.00011 43.0 2.7 33 323-367 10-42 (424)
297 PRK08163 salicylate hydroxylas 64.3 5.9 0.00013 41.2 3.2 21 324-344 5-25 (396)
298 PRK06476 pyrroline-5-carboxyla 64.3 18 0.00038 36.1 6.4 20 325-344 2-21 (258)
299 KOG2304 3-hydroxyacyl-CoA dehy 64.0 4.2 9.2E-05 41.9 1.9 32 324-367 12-43 (298)
300 TIGR02032 GG-red-SF geranylger 64.0 6.1 0.00013 38.5 3.0 33 325-369 2-34 (295)
301 TIGR01316 gltA glutamate synth 63.9 6.5 0.00014 42.7 3.5 32 324-367 134-165 (449)
302 PRK11259 solA N-methyltryptoph 63.7 6.6 0.00014 40.4 3.3 34 324-369 4-37 (376)
303 PRK13512 coenzyme A disulfide 63.6 6.5 0.00014 42.4 3.4 34 324-367 2-35 (438)
304 cd01490 Ube1_repeat2 Ubiquitin 63.4 6.7 0.00014 43.3 3.5 37 325-367 1-37 (435)
305 PRK12771 putative glutamate sy 63.3 6.7 0.00014 43.8 3.5 32 324-367 138-169 (564)
306 PRK11728 hydroxyglutarate oxid 62.9 7.3 0.00016 40.9 3.6 34 324-367 3-36 (393)
307 PRK07608 ubiquinone biosynthes 62.7 6.3 0.00014 40.8 3.0 32 324-367 6-37 (388)
308 PRK11445 putative oxidoreducta 62.5 7 0.00015 40.6 3.3 30 325-367 3-32 (351)
309 TIGR00762 DegV EDD domain prot 62.4 9.4 0.0002 38.9 4.1 116 209-357 20-141 (275)
310 PLN02852 ferredoxin-NADP+ redu 62.3 10 0.00022 42.4 4.6 34 324-367 27-60 (491)
311 PRK06753 hypothetical protein; 62.3 6.7 0.00015 40.4 3.1 21 325-345 2-22 (373)
312 PRK05708 2-dehydropantoate 2-r 62.2 22 0.00048 36.7 6.8 33 323-367 2-34 (305)
313 PRK11559 garR tartronate semia 62.1 23 0.0005 35.9 6.9 32 324-367 3-34 (296)
314 PRK11749 dihydropyrimidine deh 62.1 6.8 0.00015 42.4 3.2 32 324-367 141-172 (457)
315 PRK07877 hypothetical protein; 61.8 12 0.00026 43.8 5.4 40 316-369 103-142 (722)
316 PRK09564 coenzyme A disulfide 61.6 7.4 0.00016 41.4 3.4 36 324-369 1-36 (444)
317 cd01974 Nitrogenase_MoFe_beta 61.3 28 0.00061 37.8 7.8 34 309-345 292-325 (435)
318 PRK07417 arogenate dehydrogena 61.3 19 0.0004 36.6 6.0 31 325-367 2-32 (279)
319 PRK12831 putative oxidoreducta 61.3 7.7 0.00017 42.4 3.5 32 324-367 141-172 (464)
320 PRK14106 murD UDP-N-acetylmura 61.3 8.2 0.00018 41.3 3.6 25 322-346 4-28 (450)
321 PRK06834 hypothetical protein; 61.3 7.7 0.00017 42.7 3.5 35 322-368 2-36 (488)
322 PRK08849 2-octaprenyl-3-methyl 61.2 7.5 0.00016 40.7 3.2 32 324-367 4-35 (384)
323 PLN02350 phosphogluconate dehy 61.2 21 0.00045 40.0 6.8 104 324-448 7-111 (493)
324 PF00743 FMO-like: Flavin-bind 61.0 8.4 0.00018 43.3 3.8 22 324-345 2-23 (531)
325 PRK08013 oxidoreductase; Provi 61.0 7.5 0.00016 41.0 3.2 32 324-367 4-35 (400)
326 PRK12770 putative glutamate sy 60.8 8.3 0.00018 40.1 3.5 32 324-367 19-50 (352)
327 TIGR01377 soxA_mon sarcosine o 60.8 7.8 0.00017 39.9 3.3 33 325-369 2-34 (380)
328 PRK07045 putative monooxygenas 60.7 7.7 0.00017 40.5 3.2 22 324-345 6-27 (388)
329 TIGR00465 ilvC ketol-acid redu 60.5 24 0.00052 37.1 6.8 24 322-345 2-25 (314)
330 TIGR00292 thiazole biosynthesi 60.5 4.9 0.00011 40.7 1.7 35 324-370 22-56 (254)
331 PRK09853 putative selenate red 60.2 7.6 0.00017 47.1 3.4 33 323-367 539-571 (1019)
332 PRK12814 putative NADPH-depend 60.1 8 0.00017 44.3 3.5 33 323-367 193-225 (652)
333 PRK08773 2-octaprenyl-3-methyl 60.0 6.6 0.00014 41.0 2.6 33 324-368 7-39 (392)
334 PRK12779 putative bifunctional 59.5 7.9 0.00017 46.5 3.4 37 324-372 307-347 (944)
335 PRK07251 pyridine nucleotide-d 59.5 8.6 0.00019 41.2 3.4 33 324-368 4-36 (438)
336 TIGR01984 UbiH 2-polyprenyl-6- 59.3 7.4 0.00016 40.2 2.8 20 326-345 2-21 (382)
337 PLN02545 3-hydroxybutyryl-CoA 59.2 9 0.00019 39.0 3.3 32 324-367 5-36 (295)
338 TIGR03169 Nterm_to_SelD pyridi 59.2 6.5 0.00014 40.6 2.4 36 325-369 1-36 (364)
339 TIGR01692 HIBADH 3-hydroxyisob 59.2 23 0.0005 36.0 6.3 28 328-367 1-28 (288)
340 PLN00093 geranylgeranyl diphos 59.1 8 0.00017 42.3 3.1 22 324-345 40-61 (450)
341 PRK10262 thioredoxin reductase 59.0 8.3 0.00018 39.3 3.0 22 324-345 7-28 (321)
342 TIGR01771 L-LDH-NAD L-lactate 58.6 20 0.00043 37.3 5.8 124 328-473 1-141 (299)
343 TIGR01214 rmlD dTDP-4-dehydror 58.3 28 0.00062 34.2 6.6 59 325-418 1-60 (287)
344 TIGR01988 Ubi-OHases Ubiquinon 58.2 8 0.00017 39.6 2.8 31 326-368 2-32 (385)
345 PLN02676 polyamine oxidase 58.1 19 0.00042 39.7 5.9 22 324-345 27-48 (487)
346 PRK07588 hypothetical protein; 58.0 8.7 0.00019 40.1 3.1 21 325-345 2-22 (391)
347 PRK08243 4-hydroxybenzoate 3-m 58.0 9.3 0.0002 40.1 3.3 22 324-345 3-24 (392)
348 PRK05714 2-octaprenyl-3-methyl 57.9 7.7 0.00017 40.7 2.7 32 324-367 3-34 (405)
349 PRK10157 putative oxidoreducta 57.8 8.5 0.00018 41.5 3.0 32 324-367 6-37 (428)
350 PRK14806 bifunctional cyclohex 57.7 28 0.0006 40.1 7.3 94 324-444 4-97 (735)
351 PRK06407 ornithine cyclodeamin 57.7 19 0.00042 37.5 5.5 106 324-457 118-226 (301)
352 TIGR03315 Se_ygfK putative sel 57.7 8.8 0.00019 46.5 3.4 33 323-367 537-569 (1012)
353 PRK08244 hypothetical protein; 57.6 8.8 0.00019 41.7 3.2 32 324-367 3-34 (493)
354 PRK01747 mnmC bifunctional tRN 57.5 9.7 0.00021 43.4 3.6 33 324-368 261-293 (662)
355 PRK00711 D-amino acid dehydrog 57.5 9.5 0.00021 40.0 3.3 31 325-367 2-32 (416)
356 PRK08850 2-octaprenyl-6-methox 57.4 9.2 0.0002 40.3 3.2 32 324-367 5-36 (405)
357 PLN02527 aspartate carbamoyltr 57.2 1.9E+02 0.0041 30.4 12.8 133 261-418 94-228 (306)
358 PRK12778 putative bifunctional 57.0 11 0.00023 43.9 3.8 33 323-367 431-463 (752)
359 TIGR00031 UDP-GALP_mutase UDP- 57.0 9.7 0.00021 41.1 3.3 31 325-367 3-33 (377)
360 PRK07494 2-octaprenyl-6-methox 56.9 9 0.0002 39.8 3.0 33 324-368 8-40 (388)
361 PRK08219 short chain dehydroge 56.9 32 0.0007 32.3 6.5 75 324-419 4-82 (227)
362 cd01833 XynB_like SGNH_hydrola 56.7 45 0.00098 29.9 7.1 66 189-269 18-83 (157)
363 PRK06416 dihydrolipoamide dehy 56.7 9.2 0.0002 41.2 3.1 33 324-368 5-37 (462)
364 cd08281 liver_ADH_like1 Zinc-d 56.7 89 0.0019 32.5 10.3 32 324-366 193-224 (371)
365 PTZ00245 ubiquitin activating 56.5 9.4 0.0002 40.0 2.9 39 316-368 22-60 (287)
366 TIGR03364 HpnW_proposed FAD de 56.5 9.4 0.0002 39.3 3.0 31 325-367 2-32 (365)
367 KOG0743 AAA+-type ATPase [Post 56.4 16 0.00035 40.7 4.8 153 116-331 192-345 (457)
368 PRK08655 prephenate dehydrogen 56.4 36 0.00078 37.3 7.6 91 325-445 2-93 (437)
369 PRK08507 prephenate dehydrogen 56.3 57 0.0012 32.9 8.5 33 325-367 2-34 (275)
370 PRK12266 glpD glycerol-3-phosp 56.2 9.6 0.00021 42.2 3.2 33 324-368 7-39 (508)
371 COG2423 Predicted ornithine cy 56.1 78 0.0017 33.9 9.7 125 304-459 116-241 (330)
372 PRK12491 pyrroline-5-carboxyla 56.1 26 0.00057 35.8 6.1 35 324-366 3-37 (272)
373 PLN02463 lycopene beta cyclase 56.1 9.2 0.0002 42.0 3.0 21 324-344 29-49 (447)
374 PRK04346 tryptophan synthase s 56.0 1.8E+02 0.004 31.8 12.7 103 212-345 20-129 (397)
375 PRK06046 alanine dehydrogenase 55.7 1.1E+02 0.0025 32.0 10.9 105 324-456 130-236 (326)
376 cd01967 Nitrogenase_MoFe_alpha 55.6 73 0.0016 33.9 9.6 134 149-344 167-307 (406)
377 COG0665 DadA Glycine/D-amino a 55.6 12 0.00026 38.4 3.6 36 323-370 4-39 (387)
378 PRK01438 murD UDP-N-acetylmura 55.6 13 0.00028 40.4 4.0 22 324-345 17-38 (480)
379 PF13407 Peripla_BP_4: Peripla 55.4 46 0.00099 32.0 7.4 146 144-316 53-206 (257)
380 TIGR03143 AhpF_homolog putativ 55.4 9.8 0.00021 42.6 3.1 32 325-368 6-37 (555)
381 TIGR01789 lycopene_cycl lycope 55.3 13 0.00028 39.5 3.8 35 326-370 2-36 (370)
382 PRK06185 hypothetical protein; 55.3 10 0.00022 39.8 3.0 33 324-368 7-39 (407)
383 PF02558 ApbA: Ketopantoate re 55.2 12 0.00025 33.8 3.1 31 326-368 1-31 (151)
384 PF01946 Thi4: Thi4 family; PD 55.2 12 0.00027 38.1 3.5 35 324-370 18-52 (230)
385 COG3349 Uncharacterized conser 55.2 5.6 0.00012 44.5 1.1 46 324-372 1-51 (485)
386 PRK08010 pyridine nucleotide-d 55.2 10 0.00023 40.6 3.2 32 324-367 4-35 (441)
387 PRK07538 hypothetical protein; 54.9 10 0.00023 40.1 3.1 20 325-344 2-21 (413)
388 PRK11730 fadB multifunctional 54.7 10 0.00022 44.2 3.1 108 402-520 413-528 (715)
389 TIGR01350 lipoamide_DH dihydro 54.7 11 0.00024 40.5 3.2 30 325-366 3-32 (461)
390 TIGR01286 nifK nitrogenase mol 54.6 63 0.0014 36.5 9.2 34 309-345 352-385 (515)
391 COG0499 SAM1 S-adenosylhomocys 54.6 39 0.00085 37.0 7.2 125 294-461 186-315 (420)
392 TIGR01317 GOGAT_sm_gam glutama 54.5 12 0.00026 41.2 3.5 32 324-367 144-175 (485)
393 PRK12570 N-acetylmuramic acid- 54.5 34 0.00073 35.8 6.7 39 408-448 127-166 (296)
394 cd01493 APPBP1_RUB Ubiquitin a 54.4 9.8 0.00021 41.8 2.8 37 317-367 17-53 (425)
395 KOG2711 Glycerol-3-phosphate d 54.4 71 0.0015 34.8 9.0 110 323-444 21-139 (372)
396 TIGR01373 soxB sarcosine oxida 54.3 14 0.0003 38.8 3.9 36 324-369 31-66 (407)
397 PRK00141 murD UDP-N-acetylmura 54.2 12 0.00025 41.1 3.4 25 321-345 13-37 (473)
398 PF13241 NAD_binding_7: Putati 54.1 7 0.00015 34.0 1.4 36 321-368 5-40 (103)
399 PRK14478 nitrogenase molybdenu 54.1 39 0.00085 37.4 7.4 35 308-345 312-346 (475)
400 PRK11101 glpA sn-glycerol-3-ph 54.0 11 0.00025 42.0 3.4 32 324-367 7-38 (546)
401 PRK12809 putative oxidoreducta 53.9 12 0.00026 42.7 3.5 34 323-368 310-343 (639)
402 PRK07333 2-octaprenyl-6-methox 53.9 9.8 0.00021 39.6 2.7 21 325-345 3-23 (403)
403 COG1179 Dinucleotide-utilizing 53.9 10 0.00022 39.3 2.6 44 318-372 25-68 (263)
404 PRK06292 dihydrolipoamide dehy 53.8 12 0.00027 40.1 3.5 32 324-367 4-35 (460)
405 PRK14989 nitrite reductase sub 53.6 18 0.00039 43.0 5.0 44 323-374 3-46 (847)
406 KOG2018 Predicted dinucleotide 53.6 12 0.00025 40.4 3.1 39 317-369 71-109 (430)
407 PRK08020 ubiF 2-octaprenyl-3-m 53.5 10 0.00022 39.4 2.7 32 324-367 6-37 (391)
408 PRK09466 metL bifunctional asp 53.5 34 0.00074 40.7 7.2 161 323-503 458-634 (810)
409 PRK12416 protoporphyrinogen ox 53.2 9 0.0002 41.1 2.3 47 324-370 2-55 (463)
410 PF12831 FAD_oxidored: FAD dep 53.1 11 0.00024 40.6 3.0 33 326-370 2-34 (428)
411 TIGR02053 MerA mercuric reduct 53.1 12 0.00026 40.4 3.2 30 326-367 3-32 (463)
412 COG1063 Tdh Threonine dehydrog 53.0 19 0.00041 37.9 4.6 59 294-366 143-201 (350)
413 PRK08132 FAD-dependent oxidore 52.9 11 0.00024 41.6 3.1 22 324-345 24-45 (547)
414 TIGR01318 gltD_gamma_fam gluta 52.9 13 0.00029 40.6 3.6 32 324-367 142-173 (467)
415 PRK13369 glycerol-3-phosphate 52.8 11 0.00024 41.5 3.0 32 324-367 7-38 (502)
416 COG0027 PurT Formate-dependent 52.4 17 0.00036 39.2 4.0 95 315-432 5-122 (394)
417 PRK07208 hypothetical protein; 52.4 13 0.00028 40.0 3.4 23 323-345 4-26 (479)
418 PRK06392 homoserine dehydrogen 52.3 68 0.0015 34.1 8.6 179 325-522 2-197 (326)
419 PF03435 Saccharop_dh: Sacchar 52.3 6.9 0.00015 41.2 1.3 95 326-441 1-96 (386)
420 PRK06912 acoL dihydrolipoamide 52.2 13 0.00027 40.3 3.3 31 325-367 2-32 (458)
421 PRK00536 speE spermidine synth 52.1 24 0.00051 36.5 5.0 94 324-441 74-168 (262)
422 PRK06545 prephenate dehydrogen 52.0 49 0.0011 35.1 7.5 22 324-345 1-22 (359)
423 PRK05868 hypothetical protein; 52.0 12 0.00026 39.3 3.0 21 324-344 2-22 (372)
424 COG1052 LdhA Lactate dehydroge 51.9 78 0.0017 33.6 9.0 163 320-527 143-313 (324)
425 PRK09897 hypothetical protein; 51.8 17 0.00038 41.0 4.3 34 324-367 2-35 (534)
426 PRK05976 dihydrolipoamide dehy 51.7 14 0.0003 40.2 3.5 32 324-367 5-36 (472)
427 COG1893 ApbA Ketopantoate redu 51.6 54 0.0012 34.4 7.6 101 324-451 1-108 (307)
428 PF03486 HI0933_like: HI0933-l 51.6 13 0.00028 40.5 3.2 31 325-367 2-32 (409)
429 TIGR03219 salicylate_mono sali 51.5 13 0.00028 39.3 3.1 21 325-345 2-22 (414)
430 PF03447 NAD_binding_3: Homose 51.5 25 0.00055 30.7 4.5 95 330-450 1-95 (117)
431 TIGR02360 pbenz_hydroxyl 4-hyd 51.4 14 0.0003 39.1 3.3 32 324-367 3-34 (390)
432 PLN00112 malate dehydrogenase 51.3 50 0.0011 36.7 7.6 137 324-476 101-257 (444)
433 PRK00048 dihydrodipicolinate r 51.3 1.1E+02 0.0024 31.0 9.6 88 324-442 2-90 (257)
434 PRK08268 3-hydroxy-acyl-CoA de 51.0 14 0.0003 41.4 3.3 103 407-520 112-223 (507)
435 PF02423 OCD_Mu_crystall: Orni 51.0 28 0.00061 36.3 5.4 106 324-457 129-238 (313)
436 cd05188 MDR Medium chain reduc 50.9 32 0.00069 32.7 5.4 46 307-367 122-167 (271)
437 PLN02985 squalene monooxygenas 50.8 16 0.00034 40.8 3.7 32 324-367 44-75 (514)
438 COG0565 LasT rRNA methylase [T 50.7 56 0.0012 33.7 7.3 78 324-420 5-84 (242)
439 PRK12775 putative trifunctiona 50.6 15 0.00032 44.5 3.8 32 324-367 431-462 (1006)
440 COG0654 UbiH 2-polyprenyl-6-me 50.5 13 0.00029 39.1 3.0 32 324-367 3-34 (387)
441 PRK14694 putative mercuric red 50.5 15 0.00034 39.8 3.6 32 324-367 7-38 (468)
442 PRK10015 oxidoreductase; Provi 50.3 13 0.00028 40.2 3.0 33 324-368 6-38 (429)
443 PRK06126 hypothetical protein; 50.3 15 0.00033 40.5 3.6 33 324-368 8-40 (545)
444 PTZ00188 adrenodoxin reductase 50.2 19 0.00041 40.6 4.3 33 324-367 40-72 (506)
445 PRK06199 ornithine cyclodeamin 50.1 45 0.00098 36.1 7.0 88 324-428 156-250 (379)
446 PRK07190 hypothetical protein; 49.8 14 0.00031 40.7 3.2 33 324-368 6-38 (487)
447 cd01980 Chlide_reductase_Y Chl 49.7 1.6E+02 0.0034 32.0 11.1 48 153-203 169-216 (416)
448 PRK14852 hypothetical protein; 49.7 13 0.00028 45.0 3.0 40 316-369 328-367 (989)
449 PRK01713 ornithine carbamoyltr 49.4 95 0.0021 33.1 9.1 117 279-415 115-232 (334)
450 PRK02472 murD UDP-N-acetylmura 49.2 16 0.00034 39.2 3.3 23 323-345 5-27 (447)
451 PRK08294 phenol 2-monooxygenas 49.2 13 0.00028 42.5 2.9 33 324-367 33-65 (634)
452 cd05006 SIS_GmhA Phosphoheptos 49.2 66 0.0014 30.2 7.2 21 409-431 102-122 (177)
453 cd03466 Nitrogenase_NifN_2 Nit 49.1 39 0.00084 36.8 6.3 98 323-448 300-401 (429)
454 PRK04690 murD UDP-N-acetylmura 49.1 15 0.00033 40.2 3.3 22 324-345 9-30 (468)
455 TIGR03736 PRTRC_ThiF PRTRC sys 49.0 19 0.00042 36.7 3.8 43 324-369 12-56 (244)
456 COG2085 Predicted dinucleotide 48.9 44 0.00095 33.8 6.2 95 324-447 2-96 (211)
457 PRK08618 ornithine cyclodeamin 48.8 55 0.0012 34.2 7.2 107 324-459 128-236 (325)
458 PLN02568 polyamine oxidase 48.7 19 0.00041 40.6 4.0 23 324-346 6-28 (539)
459 PRK13984 putative oxidoreducta 48.6 17 0.00036 41.0 3.6 32 324-367 284-315 (604)
460 PRK05249 soluble pyridine nucl 48.2 17 0.00037 39.1 3.5 32 324-367 6-37 (461)
461 PRK11199 tyrA bifunctional cho 48.1 42 0.00091 35.9 6.3 32 324-367 99-131 (374)
462 PLN02927 antheraxanthin epoxid 48.0 13 0.00029 43.1 2.7 22 324-345 82-103 (668)
463 PRK06183 mhpA 3-(3-hydroxyphen 48.0 16 0.00034 40.5 3.2 22 324-345 11-32 (538)
464 cd01968 Nitrogenase_NifE_I Nit 47.9 37 0.0008 36.5 5.9 89 310-417 277-365 (410)
465 TIGR01408 Ube1 ubiquitin-activ 47.7 14 0.00031 44.8 3.1 39 316-368 20-58 (1008)
466 PRK13748 putative mercuric red 47.3 15 0.00033 40.5 3.0 32 324-367 99-130 (561)
467 PRK06567 putative bifunctional 47.2 16 0.00035 44.3 3.3 33 323-367 383-415 (1028)
468 KOG0024 Sorbitol dehydrogenase 47.2 24 0.00051 38.1 4.2 48 304-366 155-202 (354)
469 PF04820 Trp_halogenase: Trypt 47.1 18 0.00039 39.7 3.5 34 325-367 1-34 (454)
470 COG1748 LYS9 Saccharopine dehy 47.1 21 0.00045 39.0 3.9 95 324-445 2-100 (389)
471 TIGR02437 FadB fatty oxidation 47.0 16 0.00034 42.6 3.1 104 405-519 416-527 (714)
472 KOG1399 Flavin-containing mono 46.9 16 0.00035 40.4 3.1 23 323-345 6-28 (448)
473 cd01972 Nitrogenase_VnfE_like 46.9 1.6E+02 0.0035 32.0 10.6 156 129-345 136-315 (426)
474 PRK06617 2-octaprenyl-6-methox 46.9 14 0.00031 38.6 2.6 32 324-367 2-33 (374)
475 COG3380 Predicted NAD/FAD-depe 46.7 19 0.00041 38.2 3.3 32 325-368 3-34 (331)
476 PRK14477 bifunctional nitrogen 46.6 37 0.00079 40.9 6.1 189 155-416 197-397 (917)
477 TIGR01279 DPOR_bchN light-inde 46.5 24 0.00053 38.1 4.3 36 307-345 261-296 (407)
478 TIGR02931 anfK_nitrog Fe-only 46.4 58 0.0013 36.0 7.2 26 317-345 309-334 (461)
479 PF01408 GFO_IDH_MocA: Oxidore 46.3 53 0.0011 28.2 5.6 84 324-432 1-84 (120)
480 PRK06115 dihydrolipoamide dehy 46.1 20 0.00043 39.1 3.6 32 324-367 4-35 (466)
481 PF00732 GMC_oxred_N: GMC oxid 46.1 16 0.00034 36.5 2.6 34 326-370 3-36 (296)
482 TIGR01757 Malate-DH_plant mala 46.1 1.3E+02 0.0028 32.9 9.7 136 324-477 45-202 (387)
483 TIGR00441 gmhA phosphoheptose 45.6 82 0.0018 29.3 7.1 22 324-346 12-33 (154)
484 PRK04308 murD UDP-N-acetylmura 45.5 21 0.00045 38.5 3.6 23 323-345 5-27 (445)
485 PRK12557 H(2)-dependent methyl 45.2 43 0.00092 35.7 5.8 44 398-444 73-116 (342)
486 PF02254 TrkA_N: TrkA-N domain 45.2 30 0.00064 29.7 3.9 30 326-367 1-30 (116)
487 PF02719 Polysacc_synt_2: Poly 45.2 12 0.00026 39.3 1.7 76 326-418 1-87 (293)
488 COG0569 TrkA K+ transport syst 45.2 19 0.00041 35.8 3.0 101 325-447 2-104 (225)
489 PF14606 Lipase_GDSL_3: GDSL-l 45.1 21 0.00046 35.0 3.2 56 203-278 51-107 (178)
490 PRK01390 murD UDP-N-acetylmura 45.0 21 0.00046 38.6 3.6 25 321-345 7-31 (460)
491 TIGR03169 Nterm_to_SelD pyridi 44.9 46 0.00099 34.4 5.9 41 324-370 146-186 (364)
492 TIGR00562 proto_IX_ox protopor 44.8 21 0.00046 38.0 3.5 22 324-345 3-24 (462)
493 PRK05749 3-deoxy-D-manno-octul 44.4 83 0.0018 33.3 7.8 37 399-441 312-349 (425)
494 TIGR01181 dTDP_gluc_dehyt dTDP 44.2 79 0.0017 31.1 7.2 78 325-418 1-83 (317)
495 cd08231 MDR_TM0436_like Hypoth 44.1 45 0.00097 34.2 5.6 49 304-366 162-210 (361)
496 PRK02705 murD UDP-N-acetylmura 43.9 19 0.00041 38.8 3.0 21 325-345 2-22 (459)
497 TIGR02733 desat_CrtD C-3',4' d 43.7 23 0.00049 38.6 3.6 33 324-368 2-34 (492)
498 PRK06116 glutathione reductase 43.7 20 0.00043 38.6 3.1 31 325-367 6-36 (450)
499 cd08239 THR_DH_like L-threonin 43.5 45 0.00098 33.8 5.5 47 305-366 150-196 (339)
500 PRK07121 hypothetical protein; 43.4 21 0.00046 39.0 3.3 34 324-369 21-54 (492)
No 1
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=100.00 E-value=3.6e-197 Score=1542.39 Aligned_cols=485 Identities=54% Similarity=0.912 Sum_probs=476.5
Q ss_pred ceeeccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCcccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHHHHH
Q 009519 25 PCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNR 104 (533)
Q Consensus 25 ~~~~~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~ 104 (533)
++..+++|+++|+||++|||+|||.+||++|||||||||.|.|+|+|++|++.+|++++ ++|+||+||+.
T Consensus 24 ~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~----------~~l~ky~~L~~ 93 (582)
T KOG1257|consen 24 PVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLT----------SPLAKYIYLMD 93 (582)
T ss_pred ccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhcc----------chHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred hhcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceee
Q 009519 105 LHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRIL 184 (533)
Q Consensus 105 L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rIL 184 (533)
||+|||+|||+++++|+||+||||||||||+|||+||.+||+|+|||||++|+|||.++|+|||+++|++||||||+|||
T Consensus 94 L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDGerIL 173 (582)
T KOG1257|consen 94 LQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDGERIL 173 (582)
T ss_pred HHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-
Q 009519 185 GLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW- 263 (533)
Q Consensus 185 GLGDlG~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~- 263 (533)
||||||++|||||+||++||||||||+|++|||||||||||||+||+||+|+|+|++|++|+|||+|+||||+||+++|
T Consensus 174 GLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~~~yG 253 (582)
T KOG1257|consen 174 GLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVVQRYG 253 (582)
T ss_pred cccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeeeecCCCchHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHH
Q 009519 264 PKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAV 343 (533)
Q Consensus 264 P~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~ 343 (533)
|+++||||||+++|||++|+|||+++|||||||||||+|+|||||+|+|++|++|+| ++|||+|||+||+|||+||+
T Consensus 254 ~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd---~~ilf~GAG~A~~GIA~l~v 330 (582)
T KOG1257|consen 254 PNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSD---HVILFLGAGEAALGIANLIV 330 (582)
T ss_pred cceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCcccc---ceEEEecCchHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHcCCChhhhcCeEEEEeccCccccCCC-CCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCC
Q 009519 344 QAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVF 422 (533)
Q Consensus 344 ~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~-~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~F 422 (533)
.+|+ ++|+|++||+++|||+|++|||+++|+ +++++|++||++.+++ .+|+|||+.||||||||+|+++|+|
T Consensus 331 ~~m~-~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~------~~L~e~V~~vKPtvLiG~S~~~g~F 403 (582)
T KOG1257|consen 331 MAMV-KEGLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEI------KDLEEAVKEVKPTVLIGASGVGGAF 403 (582)
T ss_pred HHHH-HcCCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHH------HHHHHHHHhcCCcEEEecccCCccC
Confidence 9999 679999999999999999999999996 9999999999998764 5899999999999999999999999
Q ss_pred CHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHH
Q 009519 423 NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGT 502 (533)
Q Consensus 423 teevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~ 502 (533)
||||||+|++ +|||||||||||||++|||||||||+||+||||||||||||||+|+ ||+|+||||||+|+|||||||+
T Consensus 404 teevl~~Ma~-~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~-gK~~~pgQ~NN~yiFPGi~Lg~ 481 (582)
T KOG1257|consen 404 TEEVLRAMAK-SNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYN-GKVYVPGQGNNAYIFPGIGLGV 481 (582)
T ss_pred CHHHHHHHHh-cCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeC-CcEecccCCceeEecchHHHHH
Confidence 9999999975 9999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHhCCcccCHHHHHHHHHHHhcccCCCCC
Q 009519 503 LLSGARFITDGMLQQAAEWYVCDNCNEPI 531 (533)
Q Consensus 503 l~~~a~~Itd~M~~aAA~alA~~v~~~~~ 531 (533)
+++++++|+|+||++||++||+.+++|+.
T Consensus 482 vlsg~~~i~D~mfl~Aae~LA~~v~~e~~ 510 (582)
T KOG1257|consen 482 VLSGARRIPDEMFLAAAEALAEQVSEEEL 510 (582)
T ss_pred HHcCCccCCHHHHHHHHHHHHhhCCHhHh
Confidence 99999999999999999999999999875
No 2
>PRK13529 malate dehydrogenase; Provisional
Probab=100.00 E-value=4.1e-196 Score=1563.84 Aligned_cols=495 Identities=47% Similarity=0.798 Sum_probs=480.1
Q ss_pred CCCceeeccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCcccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHH
Q 009519 22 IPGPCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRI 101 (533)
Q Consensus 22 ~~~~~~~~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~ 101 (533)
....+.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+|
T Consensus 7 ~~~~~~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~~ 76 (563)
T PRK13529 7 KKRPLYTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKP----------TDLEKHIY 76 (563)
T ss_pred CCcceeecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCC----------ChHHHHHH
Confidence 34445667899999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHhhcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCc
Q 009519 102 LNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGS 181 (533)
Q Consensus 102 L~~L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~ 181 (533)
|++||++||+||||++++|++||||||||||||+|||+||++||+|||||||++|+|+|+++++|||.++|++|||||||
T Consensus 77 L~~L~~~Ne~Lfy~ll~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~ 156 (563)
T PRK13529 77 LRNLQDRNETLFYRLLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGE 156 (563)
T ss_pred HHHHHhcCchhhHHHHHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHH
Q 009519 182 RILGLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHA 261 (533)
Q Consensus 182 rILGLGDlG~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~ 261 (533)
|||||||||++||||||||++|||+||||||++|||||||+|||||+||+||+|+||||||++|++||+|+||||++|++
T Consensus 157 rILGLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~ 236 (563)
T PRK13529 157 RILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKR 236 (563)
T ss_pred eeeeccccCCCcccccccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCceeeeecCCCchHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHH
Q 009519 262 RWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKM 341 (533)
Q Consensus 262 ~~P~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~l 341 (533)
+||+++||||||+++|||+||+|||+++|||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||+|
T Consensus 237 ~~P~~~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d---~riv~~GAGsAgiGia~l 313 (563)
T PRK13529 237 RFPNALLQFEDFAQKNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSD---QRIVFLGAGSAGCGIADQ 313 (563)
T ss_pred hCCCeEEehhhcCCchHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCc---cCCCCHHHHhcccCCcEEEEeccC
Q 009519 342 AVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL---REGASLLEVVRKVKPHVLLGLSGV 418 (533)
Q Consensus 342 l~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~---~~~~~L~e~V~~vkptvLIG~S~~ 418 (533)
|+++|+ ++|+|+|||++|||+||++|||+++|++|+++|++|||+.++...| ....+|+|||+++|||||||+|++
T Consensus 314 l~~~~~-~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~ 392 (563)
T PRK13529 314 IVAAMV-REGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQ 392 (563)
T ss_pred HHHHHH-HcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCC
Confidence 999999 6899999999999999999999999988999999999986653222 234789999999999999999999
Q ss_pred CCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhh
Q 009519 419 GGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGI 498 (533)
Q Consensus 419 ~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGi 498 (533)
+|+|||||||+|++ +|+|||||||||||++|||||||||+||+||||||||||||||+|+ |++++||||||+||||||
T Consensus 393 ~g~Ft~evv~~Ma~-~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~-G~~~~p~Q~NN~~iFPGi 470 (563)
T PRK13529 393 PGAFTEEIVKEMAA-HCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYN-GKTYPIGQCNNAYIFPGL 470 (563)
T ss_pred CCCCCHHHHHHHHh-cCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeC-CeEeccCcCcceeecccc
Confidence 99999999999975 9999999999999999999999999999999999999999999995 999999999999999999
Q ss_pred hHHHHHhCCcccCHHHHHHHHHHHhcccCCCCCC
Q 009519 499 GLGTLLSGARFITDGMLQQAAEWYVCDNCNEPIS 532 (533)
Q Consensus 499 glG~l~~~a~~Itd~M~~aAA~alA~~v~~~~~~ 532 (533)
|||+++++|++|||+||++||++||+++++++++
T Consensus 471 glGa~~~~a~~Itd~m~~aAA~alA~~v~~~~l~ 504 (563)
T PRK13529 471 GLGVIASGARRVTDGMLMAAAHALADCVPLAKPG 504 (563)
T ss_pred hhhhhhcCCcCCCHHHHHHHHHHHHhhCccccCC
Confidence 9999999999999999999999999999998765
No 3
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=6.7e-195 Score=1553.43 Aligned_cols=491 Identities=49% Similarity=0.849 Sum_probs=476.0
Q ss_pred ceeeccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCcccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHHHHH
Q 009519 25 PCMVHKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNR 104 (533)
Q Consensus 25 ~~~~~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~ 104 (533)
.+.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++ ++|+||+||++
T Consensus 12 ~~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~----------~~l~Ky~~L~~ 81 (559)
T PTZ00317 12 KVPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIE----------TPINKYQFLRN 81 (559)
T ss_pred ccccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCC----------ChHHHHHHHHH
Confidence 34556899999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred hhcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceee
Q 009519 105 LHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRIL 184 (533)
Q Consensus 105 L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rIL 184 (533)
||++||+|||+++++|++||||||||||||+||++||++||+|||||||++|+|+|+++++|||.++|++||||||||||
T Consensus 82 L~~~Ne~Lfy~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rIL 161 (559)
T PTZ00317 82 IHDTNETLFYALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRIL 161 (559)
T ss_pred HhhcCchHHHHHHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCC
Q 009519 185 GLGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP 264 (533)
Q Consensus 185 GLGDlG~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P 264 (533)
||||||++||||||||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|+|||+|+||||++|+++||
T Consensus 162 GLGDlG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~P 241 (559)
T PTZ00317 162 GLGDLGANGMGISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRWP 241 (559)
T ss_pred ccCCcccccccccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeecCCCchHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHH
Q 009519 265 KAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 265 ~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~ 344 (533)
+++||||||+++|||+||+|||+++|||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||++
T Consensus 242 ~~~Iq~EDf~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d---~riv~~GAGsAgiGia~ll~~ 318 (559)
T PTZ00317 242 NAVVQFEDFSNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEE---QRIVFFGAGSAAIGVANNIAD 318 (559)
T ss_pred CeEEehhhcCCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhh---cEEEEECCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHcCCChhhhcCeEEEEeccCccccCCCC-CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCC
Q 009519 345 AAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFN 423 (533)
Q Consensus 345 ~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~-l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Ft 423 (533)
+|+ ++|+|+|||++|||+||++|||+++|++ |+++|++|||+.++..+ ....+|+|||+.+|||||||+|+++|+||
T Consensus 319 ~m~-~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~-~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft 396 (559)
T PTZ00317 319 LAA-EYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAED-SSLKTLEDVVRFVKPTALLGLSGVGGVFT 396 (559)
T ss_pred HHH-HcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhcccccccc-ccCCCHHHHHhccCCCEEEEecCCCCCCC
Confidence 999 6899999999999999999999999965 99999999997532110 12579999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHH
Q 009519 424 EEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTL 503 (533)
Q Consensus 424 eevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l 503 (533)
|||||+|++ +|+|||||||||||++|||||||||+||+|||||||||||+||+| +||+++||||||+|||||||||++
T Consensus 397 ~evv~~Ma~-~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~-~G~~~~p~Q~NN~~iFPGiglG~l 474 (559)
T PTZ00317 397 EEVVKTMAS-NVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTL-NGKTIQPSQGNNLYVFPGVGLGCA 474 (559)
T ss_pred HHHHHHHHh-cCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCccc-CCeeeccCcCcceeeccchhhhhH
Confidence 999999975 999999999999999999999999999999999999999999999 599999999999999999999999
Q ss_pred HhCCcccCHHHHHHHHHHHhcccCCCCCC
Q 009519 504 LSGARFITDGMLQQAAEWYVCDNCNEPIS 532 (533)
Q Consensus 504 ~~~a~~Itd~M~~aAA~alA~~v~~~~~~ 532 (533)
+++|++|||+||++||++||+++++++++
T Consensus 475 ~~~a~~Itd~m~~aAA~aLA~~v~~~~l~ 503 (559)
T PTZ00317 475 IAQPSYIPDEMLIAAAASLATLVSEEDLR 503 (559)
T ss_pred hhcccCCCHHHHHHHHHHHHhhCCccccC
Confidence 99999999999999999999999998764
No 4
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=100.00 E-value=8.5e-193 Score=1542.40 Aligned_cols=483 Identities=59% Similarity=0.973 Sum_probs=473.1
Q ss_pred ccCccccccCCCCCcCCCCChHHhhhcCCCCCCCCcccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHHHHHhhcc
Q 009519 29 HKRGTDILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDR 108 (533)
Q Consensus 29 ~~~G~~~l~~p~~NKgtaFt~~ER~~l~l~GLLPp~v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L~~~ 108 (533)
..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||++++ ++|+||+||++||++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~----------~~l~ky~~L~~L~~~ 108 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALE----------SPLAKYRALMDLQER 108 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccC----------CcHHHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCC
Q 009519 109 NETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGD 188 (533)
Q Consensus 109 Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGD 188 (533)
||+|||+++++|++||||||||||||+||++||++||+|||||||++|+|+++++++|||.++|++||||||+|||||||
T Consensus 109 Ne~Lfy~ll~~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGD 188 (581)
T PLN03129 109 NERLFYRVLIDNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGD 188 (581)
T ss_pred CcccchhhhhcCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-CCce
Q 009519 189 LGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-PKAI 267 (533)
Q Consensus 189 lG~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~-P~~~ 267 (533)
||++||||||||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|+|||+|+||||++|+++| |+++
T Consensus 189 lG~~Gm~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~ 268 (581)
T PLN03129 189 LGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVL 268 (581)
T ss_pred cCCCccccchhHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred eeeecCCCchHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHH
Q 009519 268 VQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAA 347 (533)
Q Consensus 268 I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~ 347 (533)
||||||+++|||+||+|||+++|||||||||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||+++|+
T Consensus 269 I~~EDf~~~~af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d---~riv~~GAGsAgigia~ll~~~~~ 345 (581)
T PLN03129 269 VQFEDFANKNAFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLAD---QRILFAGAGEAGTGIAELIALAMS 345 (581)
T ss_pred EehhhcCCccHHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhh---ceEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHcCCChhhhcCeEEEEeccCccccCCCC-CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHH
Q 009519 348 RMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEV 426 (533)
Q Consensus 348 ~~~Gls~~eA~~~i~lvD~~GLi~~~r~~-l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteev 426 (533)
+++|+|+|||++|||+||++|||+++|++ |+++|++||++.+ +..+|+|||+++|||||||+|+++|+|||||
T Consensus 346 ~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~------~~~~L~e~v~~vkptvLIG~S~~~g~Ft~ev 419 (581)
T PLN03129 346 RQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE------PGASLLEAVKAIKPTVLIGLSGVGGTFTKEV 419 (581)
T ss_pred hhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc------cCCCHHHHHhccCCCEEEEecCCCCCCCHHH
Confidence 54699999999999999999999999976 9999999999853 3478999999999999999999999999999
Q ss_pred HHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhC
Q 009519 427 LKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSG 506 (533)
Q Consensus 427 v~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~ 506 (533)
||+|++ +|+|||||||||||+++||||||||+||+|||||||||||+||+|+ ||+++||||||+|||||||||+++++
T Consensus 420 i~~Ma~-~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~-Gr~~~p~Q~NN~~iFPGiglGal~~~ 497 (581)
T PLN03129 420 LEAMAS-LNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYN-GKTFHPGQANNAYIFPGIGLGALLSG 497 (581)
T ss_pred HHHHHh-cCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeC-CeeecCccccceeeccchhhHHHhcC
Confidence 999975 9999999999999999999999999999999999999999999995 99999999999999999999999999
Q ss_pred CcccCHHHHHHHHHHHhcccCCCCCC
Q 009519 507 ARFITDGMLQQAAEWYVCDNCNEPIS 532 (533)
Q Consensus 507 a~~Itd~M~~aAA~alA~~v~~~~~~ 532 (533)
|++|||+||++||++||+++++++++
T Consensus 498 a~~Itd~m~~aAA~aLA~~v~~~~l~ 523 (581)
T PLN03129 498 AIRVTDDMLLAAAEALAAQVTEEELA 523 (581)
T ss_pred CcCCCHHHHHHHHHHHHHhCCcccCC
Confidence 99999999999999999999998765
No 5
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=100.00 E-value=4.2e-110 Score=868.95 Aligned_cols=366 Identities=36% Similarity=0.523 Sum_probs=321.5
Q ss_pred ccCHHHHHHHHHHHHhchhcccCCCCCccCchhHHHHHHHhhcccchhhheeeccCcccccceecccchHHHHHHHhhhc
Q 009519 65 VISFEQQYARFMESFRSLEKNTEGQPNKVVSLAKWRILNRLHDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLF 144 (533)
Q Consensus 65 v~t~e~Q~~R~~~~~~~~~~~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~ 144 (533)
|+|+| |.+|.+.++..+.. ..|++|.|| ++|+.+||.++-.|..|+|||+||||||++|++|++.|
T Consensus 1 v~t~~-q~~~~~~~~~~~~~---------~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~ 66 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKT---------EALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDP 66 (432)
T ss_pred CccHH-HHHHHHHHHhhhhh---------hhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCc
Confidence 57899 99999999998873 489999999 99999999999999999999999999999999999766
Q ss_pred cCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCC-CcccccchhhhhHhhhcCCCCCceecEEeecc
Q 009519 145 RRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV-QGIGIPIGKLDVYVAAAGINPQRILPVMLDVG 223 (533)
Q Consensus 145 r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~-~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvG 223 (533)
++++ ++.. ++++|||||||||||||||||+ +||||||||++|||+||||| +||||||+|
T Consensus 67 ~~~~-------------~yt~----~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid---~~pI~ld~~ 126 (432)
T COG0281 67 RKAY-------------SYTA----RGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGID---VLPIELDVG 126 (432)
T ss_pred chhh-------------hcCC----CCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCC---ceeeEeeCC
Confidence 6654 3333 5579999999999999999995 99999999999999999999 999999999
Q ss_pred CCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhc--cCceeccCcchhHH
Q 009519 224 TNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRK--RFCMFNDDIQGTAG 301 (533)
Q Consensus 224 TnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~--~~~~FnDDiQGTaa 301 (533)
|||+ +++||+++...||+..+ ||++.|+||.+++++|. .||||||||||||+
T Consensus 127 ~~~e------------------------i~~~Vkal~p~FgginL--edi~ap~cf~ie~~lr~~~~IPvFhDDqqGTai 180 (432)
T COG0281 127 TNNE------------------------IIEFVKALEPTFGGINL--EDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAI 180 (432)
T ss_pred ChHH------------------------HHHHHHHhhhcCCCcce--eecccchhhHHHHHHhhcCCCCcccccccHHHH
Confidence 9975 56666666666665555 55555666666665554 59999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC--CCh
Q 009519 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN--LDP 379 (533)
Q Consensus 302 V~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~--l~~ 379 (533)
|+||||+||+|++|++|+| +||||+|||+||+||+++|..+|+ ++ +|||+|||+|+|+++|++ +++
T Consensus 181 v~lA~llnalk~~gk~l~d---~kiv~~GAGAAgiaia~~l~~~g~-----~~----~~i~~~D~~G~l~~~r~~~~~~~ 248 (432)
T COG0281 181 VTLAALLNALKLTGKKLKD---QKIVINGAGAAGIAIADLLVAAGV-----KE----ENIFVVDRKGLLYDGREDLTMNQ 248 (432)
T ss_pred HHHHHHHHHHHHhCCCccc---eEEEEeCCcHHHHHHHHHHHHhCC-----Cc----ccEEEEecCCcccCCCcccccch
Confidence 9999999999999999999 999999999999999999999866 22 799999999999999976 677
Q ss_pred hhhcccc-ccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHh
Q 009519 380 AAAPFAK-DPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF 458 (533)
Q Consensus 380 ~k~~~A~-~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~ 458 (533)
+|..+|. ...+| .+ .+++. +||||||+|++ |+||+|+||+|+ ++||||||||||+ |++||||.
T Consensus 249 ~k~~~a~~~~~~~------~~-~~~~~--~adv~iG~S~~-G~~t~e~V~~Ma----~~PiIfalaNP~p--Ei~Pe~a~ 312 (432)
T COG0281 249 KKYAKAIEDTGER------TL-DLALA--GADVLIGVSGV-GAFTEEMVKEMA----KHPIIFALANPTP--EITPEDAK 312 (432)
T ss_pred HHHHHHHhhhccc------cc-ccccc--CCCEEEEcCCC-CCcCHHHHHHhc----cCCEEeecCCCCc--cCCHHHHh
Confidence 7777775 44433 21 34554 59999999997 999999999996 4699999999997 99999999
Q ss_pred cccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCC
Q 009519 459 KHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNE 529 (533)
Q Consensus 459 ~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~ 529 (533)
+|++|++|+||| |+++|||+||+|+|||||+|+|++||++|||+|++|||+|||+++.++
T Consensus 313 ~~~~~aaivaTG-----------rsd~PnQvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~~ 372 (432)
T COG0281 313 EWGDGAAIVATG-----------RSDYPNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREE 372 (432)
T ss_pred hcCCCCEEEEeC-----------CCCCcccccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhhcccc
Confidence 999999999996 777888999999999999999999999999999999999999997753
No 6
>PRK12862 malic enzyme; Reviewed
Probab=100.00 E-value=5.7e-105 Score=889.91 Aligned_cols=329 Identities=30% Similarity=0.443 Sum_probs=305.0
Q ss_pred heeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCc
Q 009519 114 YRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQG 193 (533)
Q Consensus 114 y~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~G 193 (533)
-++.+++.+| |.++|||||+++|+++. +|++.+++++. +++.++|||||||||||||+|++|
T Consensus 31 ~~~~~~~~~d-l~~~ytpgv~~~~~~i~-------------~~~~~~~~~t~----~~n~v~vvtdg~~vLGlGd~G~~~ 92 (763)
T PRK12862 31 PTKPLANQRD-LALAYSPGVAAPCLEIA-------------ADPANAARYTS----RGNLVAVVSNGTAVLGLGNIGPLA 92 (763)
T ss_pred ecCCCCCHHH-ceeeeCCchHHHHHHHH-------------hChHhhhhccc----CCcEEEEEechhhhccccccCccc
Confidence 5667788877 79999999999999987 67777765543 778999999999999999999975
Q ss_pred -ccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCc-eeeee
Q 009519 194 -IGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQFE 271 (533)
Q Consensus 194 -m~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~-~I~~E 271 (533)
|||||||++|||+||||| +||+||||+ || ||||++|+.+||++ +||||
T Consensus 93 ~~pv~egK~~l~~~~~gi~-------~~~i~~~~~----d~-------------------d~~v~~v~~~~p~f~~i~~E 142 (763)
T PRK12862 93 SKPVMEGKAVLFKKFAGID-------VFDIELDES----DP-------------------DKLVEIVAALEPTFGGINLE 142 (763)
T ss_pred ccchHHHHHHHHHhhcCCC-------ccccccCCC----CH-------------------HHHHHHHHHhCCCcceeeee
Confidence 999999999999999999 555566665 65 99999999999995 99999
Q ss_pred cCCCchHHHHHHHHhcc--CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHH
Q 009519 272 DFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARM 349 (533)
Q Consensus 272 Df~~~~af~iL~ryr~~--~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~ 349 (533)
||++||||+||+|||++ ||||||||||||+|+||||+||+|++|++|+| +||||+|||+||+|||++|+.
T Consensus 143 D~~~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~l~~a~~~~~~~~~~---~~iv~~GaGaag~~~a~~l~~----- 214 (763)
T PRK12862 143 DIKAPECFYIERELRERMKIPVFHDDQHGTAIIVAAALLNGLKLVGKDIED---VKLVASGAGAAALACLDLLVS----- 214 (763)
T ss_pred cccCchHHHHHHHHHhcCCCceEecCcccHHHHHHHHHHHHHHHhCCChhh---cEEEEEChhHHHHHHHHHHHH-----
Confidence 99999999999999998 89999999999999999999999999999999 999999999999999999986
Q ss_pred cCCChhhhcCeEEEEeccCccccCCCC-CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 350 AGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 350 ~Gls~~eA~~~i~lvD~~GLi~~~r~~-l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
.|+++ +||||||++|||+++|++ |+++|++||++++ ..+|+|||++ ||||||+|+ +|+||+|||+
T Consensus 215 ~G~~~----~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~-------~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~ 280 (763)
T PRK12862 215 LGVKR----ENIWVTDIKGVVYEGRTELMDPWKARYAQKTD-------ARTLAEVIEG--ADVFLGLSA-AGVLKPEMVK 280 (763)
T ss_pred cCCCc----ccEEEEcCCCeeeCCCCccccHHHHHHhhhcc-------cCCHHHHHcC--CCEEEEcCC-CCCCCHHHHH
Confidence 48874 799999999999999975 9999999999853 2689999999 999999999 9999999999
Q ss_pred HhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCc
Q 009519 429 AMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 508 (533)
Q Consensus 429 ~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~ 508 (533)
+|+ +|||||||||||| ||+||||++||+| +||||| |+++|||+||+|+|||||+|++++||+
T Consensus 281 ~M~----~~piifalsNP~~--E~~p~~a~~~~~~-~i~atG-----------rs~~p~Q~NN~~~FPgi~~g~l~~~a~ 342 (763)
T PRK12862 281 KMA----PRPLIFALANPTP--EILPEEARAVRPD-AIIATG-----------RSDYPNQVNNVLCFPYIFRGALDVGAT 342 (763)
T ss_pred Hhc----cCCEEEeCCCCcc--cCCHHHHHHhcCC-EEEEEC-----------CcCCCCcccceeeccchhhhHHhcCCe
Confidence 995 8999999999997 9999999999998 999995 999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhcccCCCC
Q 009519 509 FITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 509 ~Itd~M~~aAA~alA~~v~~~~ 530 (533)
+|||+|+++||++||++++++.
T Consensus 343 ~i~~~m~~aaa~ala~~~~~~~ 364 (763)
T PRK12862 343 TINEEMKIAAVRAIAELAREEQ 364 (763)
T ss_pred eCCHHHHHHHHHHHHhcccccC
Confidence 9999999999999999998874
No 7
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=100.00 E-value=2.6e-104 Score=881.08 Aligned_cols=328 Identities=31% Similarity=0.471 Sum_probs=302.7
Q ss_pred heeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCCC-
Q 009519 114 YRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQ- 192 (533)
Q Consensus 114 y~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~- 192 (533)
-++.+.+.+| |+++|||||+++|+++ +++|+++| ++.+| ++.++|||||||||||||+|++
T Consensus 23 ~~~~~~~~~d-l~~~Ytpgv~~~c~~i---~~~~~~~~-~~t~~-------------~n~v~vvtdg~~vLGlGd~G~~a 84 (752)
T PRK07232 23 PTKPLATQRD-LSLAYSPGVAAPCLEI---AKDPADAY-KYTAR-------------GNLVAVISNGTAVLGLGNIGALA 84 (752)
T ss_pred eccccCChhh-cceecCCchHHHHHHH---HhChhhcc-ccccC-------------CcEEEEEccchhhcccccccccc
Confidence 4566777777 8999999999999955 46777777 55554 4679999999999999999996
Q ss_pred cccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCc-eeeee
Q 009519 193 GIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQFE 271 (533)
Q Consensus 193 Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~-~I~~E 271 (533)
||||||||++|||+||||| ++|+||||+ | +||||++|+.+||++ +||||
T Consensus 85 ~~pv~egK~~l~~~~~gid-------~~~i~~~~~----d-------------------~de~v~~v~~~~p~~g~i~~E 134 (752)
T PRK07232 85 SKPVMEGKGVLFKKFAGID-------VFDIEVDEE----D-------------------PDKFIEAVAALEPTFGGINLE 134 (752)
T ss_pred CccHHHHHHHHHHhhcCCC-------ccccccCCC----C-------------------HHHHHHHHHHhCCCccEEeee
Confidence 9999999999999999999 455556664 4 899999999999998 99999
Q ss_pred cCCCchHHHHHHHHhcc--CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHH
Q 009519 272 DFQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARM 349 (533)
Q Consensus 272 Df~~~~af~iL~ryr~~--~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~ 349 (533)
||++||||+||+|||++ ||||||||||||+|+||||+||+|++|++|+| +||||+|||+||+|||+||+.
T Consensus 135 D~~~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~l~na~~~~~~~~~~---~~iv~~GaGaag~~~a~~l~~----- 206 (752)
T PRK07232 135 DIKAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAALLNALELVGKKIED---VKIVVSGAGAAAIACLNLLVA----- 206 (752)
T ss_pred ecCCchHHHHHHHHHHhcCCCeeccccchHHHHHHHHHHHHHHHhCCChhh---cEEEEECccHHHHHHHHHHHH-----
Confidence 99999999999999998 79999999999999999999999999999999 999999999999999999986
Q ss_pred cCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 350 AGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 350 ~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
.|++ ++|||+||++|||+++| ++|+++|++||++++ ..+|+|+|++ ||||||+|+ +|+||+|||+
T Consensus 207 ~G~~----~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~-------~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~ 272 (752)
T PRK07232 207 LGAK----KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTD-------ARTLAEAIEG--ADVFLGLSA-AGVLTPEMVK 272 (752)
T ss_pred cCCC----cccEEEEcCCCeecCCCcccccHHHHHHhccCC-------CCCHHHHHcC--CCEEEEcCC-CCCCCHHHHH
Confidence 4777 57999999999999999 579999999999843 3589999999 999999998 9999999999
Q ss_pred HhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCc
Q 009519 429 AMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 508 (533)
Q Consensus 429 ~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~ 508 (533)
+|+ +|||||||||||| ||+||||++||+| +||||| |+++|||+||+|+|||||+|++++||+
T Consensus 273 ~M~----~~piifalsNP~~--E~~p~~a~~~~~~-~i~atG-----------rs~~pnQ~NN~~~FPgi~~g~l~~~a~ 334 (752)
T PRK07232 273 SMA----DNPIIFALANPDP--EITPEEAKAVRPD-AIIATG-----------RSDYPNQVNNVLCFPYIFRGALDVGAT 334 (752)
T ss_pred Hhc----cCCEEEecCCCCc--cCCHHHHHHhcCC-EEEEEC-----------CcCCCCcccceeecchhhHHHHHcCCc
Confidence 995 6999999999998 9999999999999 999995 999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHhcccCCC
Q 009519 509 FITDGMLQQAAEWYVCDNCNE 529 (533)
Q Consensus 509 ~Itd~M~~aAA~alA~~v~~~ 529 (533)
+|||+|+++||++||++++++
T Consensus 335 ~i~~~m~~aaa~ala~~~~~~ 355 (752)
T PRK07232 335 TINEEMKLAAVRAIAELAREE 355 (752)
T ss_pred cCCHHHHHHHHHHHHhhcccc
Confidence 999999999999999999875
No 8
>PRK12861 malic enzyme; Reviewed
Probab=100.00 E-value=3.9e-104 Score=879.30 Aligned_cols=330 Identities=30% Similarity=0.458 Sum_probs=302.2
Q ss_pred heeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCc
Q 009519 114 YRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQG 193 (533)
Q Consensus 114 y~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~G 193 (533)
-++.+.+.+| |+++|||||+++|+++. +|++.++++.. +++.++|||||||||||||+|++|
T Consensus 27 ~~~~~~~~~d-l~l~YtPgVa~~c~~i~-------------~~p~~~~~~t~----r~n~v~VvtdG~~vLGLGdiG~~a 88 (764)
T PRK12861 27 ASKPLVTQRD-LALAYTPGVASACEEIA-------------ADPLNAFRFTS----RGNLVGVITNGTAVLGLGNIGALA 88 (764)
T ss_pred eccccCChHH-ceeecCCchHHHHHHHH-------------hChHhhhhhhc----cCcEEEEEecchhhccCCCcCccc
Confidence 5567778877 79999999999999965 45555543333 567899999999999999999965
Q ss_pred -ccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeec
Q 009519 194 -IGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFED 272 (533)
Q Consensus 194 -m~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~ED 272 (533)
|||||||++|||+||||| +||+|||| +|| |+|| |||++++.+||. |||||
T Consensus 89 ~~pvmeGK~~L~~~~agid-------~~di~~~~----~dp---------------d~~v-~~v~a~~~~fg~--i~lED 139 (764)
T PRK12861 89 SKPVMEGKAVLFKKFAGID-------VFDIEINE----TDP---------------DKLV-DIIAGLEPTFGG--INLED 139 (764)
T ss_pred ccchHHHHHHHHhhccCCC-------ccccccCC----CCH---------------HHHH-HHHHHHHhhcCC--ceeee
Confidence 999999999999999999 67777777 787 7888 999999999988 99999
Q ss_pred CCCchHHHHHHHHhcc--CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHc
Q 009519 273 FQMKWAFETLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMA 350 (533)
Q Consensus 273 f~~~~af~iL~ryr~~--~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~ 350 (533)
|++||||+||+|||++ ||||||||||||+|+||||+||+|++|++|+| +||||+|||+||+|||++|++ .
T Consensus 140 ~~~p~~f~il~~~~~~~~ipvf~DD~qGTa~v~lA~llnal~~~gk~l~d---~~iv~~GAGaAg~~ia~~l~~-----~ 211 (764)
T PRK12861 140 IKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKE---VKVVTSGAGAAALACLDLLVD-----L 211 (764)
T ss_pred ccCchHHHHHHHHHhcCCCCeeccccchHHHHHHHHHHHHHHHhCCChhH---cEEEEECHhHHHHHHHHHHHH-----c
Confidence 9999999999999995 99999999999999999999999999999999 999999999999999999865 5
Q ss_pred CCChhhhcCeEEEEeccCccccCCCC-CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHH
Q 009519 351 GNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (533)
Q Consensus 351 Gls~~eA~~~i~lvD~~GLi~~~r~~-l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~ 429 (533)
|++++ |||+||++|||+++|++ |+++|++||++++ ..+|+|||++ +|||||+|+ +|+||+|||++
T Consensus 212 G~~~~----~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~-------~~~L~eai~~--advliG~S~-~g~ft~e~v~~ 277 (764)
T PRK12861 212 GLPVE----NIWVTDIEGVVYRGRTTLMDPDKERFAQETD-------ARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKA 277 (764)
T ss_pred CCChh----hEEEEcCCCeeeCCCcccCCHHHHHHHhhcC-------CCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHH
Confidence 88863 99999999999999975 9999999999853 2689999999 899999998 99999999999
Q ss_pred hhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcc
Q 009519 430 MRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARF 509 (533)
Q Consensus 430 Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~ 509 (533)
|+ +|||||||||||| ||+||||++ |+|++|||| ||+++|||+||+|+|||||||++++||++
T Consensus 278 Ma----~~PIIFaLsNPtp--E~~pe~a~~-~~g~aivaT-----------Grs~~pnQ~NN~l~FPgi~~Gal~~~a~~ 339 (764)
T PRK12861 278 MA----ARPLILALANPTP--EIFPELAHA-TRDDVVIAT-----------GRSDYPNQVNNVLCFPYIFRGALDVGATT 339 (764)
T ss_pred hc----cCCEEEECCCCCc--cCCHHHHHh-cCCCEEEEe-----------CCcCCCCccceeeecchhhHHHHHcCCcc
Confidence 95 5999999999998 999999987 999999999 59999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhcccCCCC
Q 009519 510 ITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 510 Itd~M~~aAA~alA~~v~~~~ 530 (533)
|||+|+++||++||++++++.
T Consensus 340 I~~~M~~aAa~alA~~~~~~~ 360 (764)
T PRK12861 340 ITREMEIAAVHAIAGLAEEEQ 360 (764)
T ss_pred CCHHHHHHHHHHHHhhCCccc
Confidence 999999999999999999875
No 9
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=100.00 E-value=2.6e-87 Score=666.33 Aligned_cols=227 Identities=48% Similarity=0.758 Sum_probs=202.5
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC
Q 009519 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (533)
Q Consensus 296 iQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~ 375 (533)
|||||+|+|||||||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|++||++||||||++|||+++|+
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d---~riv~~GAGsAg~gia~ll~~~~~-~~G~~~~eA~~~i~lvD~~Gll~~~r~ 76 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSD---QRIVFFGAGSAGIGIARLLVAAMV-REGLSEEEARKRIWLVDSKGLLTDDRE 76 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG----EEEEEB-SHHHHHHHHHHHHHHH-CTTS-HHHHHTTEEEEETTEEEBTTTS
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHH---cEEEEeCCChhHHHHHHHHHHHHH-HhcCCHHHHhccEEEEeccceEeccCc
Confidence 8999999999999999999999999 999999999999999999999999 689999999999999999999999999
Q ss_pred CCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHH
Q 009519 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA 455 (533)
Q Consensus 376 ~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe 455 (533)
+|+++|++|||+.+++. ...+|+|+|+++|||||||+|+++|+|||||||+|++ +|||||||||||||+++|||||
T Consensus 77 ~l~~~~~~~a~~~~~~~---~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~-~~erPIIF~LSNPt~~aE~~pe 152 (255)
T PF03949_consen 77 DLNPHKKPFARKTNPEK---DWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAK-HNERPIIFPLSNPTPKAECTPE 152 (255)
T ss_dssp SHSHHHHHHHBSSSTTT-----SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHH-HSSSEEEEE-SSSCGGSSS-HH
T ss_pred cCChhhhhhhccCcccc---cccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhc-cCCCCEEEECCCCCCcccCCHH
Confidence 99999999999987642 2379999999999999999999999999999999975 9999999999999999999999
Q ss_pred HHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCCC
Q 009519 456 DAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPI 531 (533)
Q Consensus 456 ~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~~ 531 (533)
|||+||+|+|||||||||+||+| +||+++||||||+|||||||||++++||++|||+||++||++||++++++++
T Consensus 153 da~~~t~g~ai~AtGSpf~pv~~-~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~ 227 (255)
T PF03949_consen 153 DAYEWTDGRAIFATGSPFPPVEY-NGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEEL 227 (255)
T ss_dssp HHHHTTTSEEEEEESS----EEE-TSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHH
T ss_pred HHHhhCCceEEEecCCccCCeee-CCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccC
Confidence 99999999999999999999999 5999999999999999999999999999999999999999999999998743
No 10
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=100.00 E-value=1.2e-84 Score=654.30 Aligned_cols=227 Identities=53% Similarity=0.839 Sum_probs=218.8
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC
Q 009519 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (533)
Q Consensus 296 iQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~ 375 (533)
|||||+|+||||+||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+|||++|||++|++|||+++|+
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d---~~iv~~GAGsAg~gia~ll~~~~~-~~G~~~eeA~~~i~~vD~~Gll~~~r~ 76 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSD---QRILFLGAGSAGIGIADLIVSAMV-REGLSEEEARKKIWLVDSKGLLTKDRK 76 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhh---cEEEEECcCHHHHHHHHHHHHHHH-HcCCChhhccCeEEEEcCCCeEeCCCC
Confidence 8999999999999999999999999 999999999999999999999999 689999999999999999999999998
Q ss_pred CCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHH
Q 009519 376 NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA 455 (533)
Q Consensus 376 ~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe 455 (533)
+|+++|++||++.++ .+.++|+|+|+++|||||||+|+++|+||+||||+|++ +|+|||||||||||++||||||
T Consensus 77 ~l~~~~~~~a~~~~~----~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~-~~~~PIIFaLSNPt~~~E~~pe 151 (279)
T cd05312 77 DLTPFKKPFARKDEE----KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAK-SNERPIIFALSNPTSKAECTAE 151 (279)
T ss_pred cchHHHHHHHhhcCc----ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHh-cCCCCEEEECCCcCCccccCHH
Confidence 899999999998653 24579999999999999999999999999999999975 9999999999999999999999
Q ss_pred HHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCCCC
Q 009519 456 DAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPIS 532 (533)
Q Consensus 456 ~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~~~ 532 (533)
|||+||+||+||||||||+||+|+ ||+++||||||+|+|||||||+++++|++|||+||++||++||+++++++++
T Consensus 152 ~a~~~t~G~ai~ATGsPf~pv~~~-Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~ 227 (279)
T cd05312 152 DAYKWTDGRALFASGSPFPPVEYN-GKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELA 227 (279)
T ss_pred HHHHhhcCCEEEEeCCCCCCeeeC-CeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccC
Confidence 999999999999999999999995 9999999999999999999999999999999999999999999999998765
No 11
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=100.00 E-value=1.9e-84 Score=645.25 Aligned_cols=225 Identities=39% Similarity=0.646 Sum_probs=216.3
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC
Q 009519 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (533)
Q Consensus 296 iQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~ 375 (533)
|||||+|+|||||||+|++|++|+| |||||+|||+||+|||+||+++|+ ++|+|+|||++|||+||++|||+++|+
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d---~riv~~GAGsAg~gia~ll~~~~~-~~Gls~e~A~~~i~~vD~~Gll~~~r~ 76 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISE---HKVLFNGAGAAALGIANLIVXLXV-KEGISKEEACKRIWXVDRKGLLVKNRK 76 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhh---cEEEEECcCHHHHHHHHHHHHHHH-hcCCCHHHHhccEEEECCCCeEeCCCC
Confidence 7999999999999999999999999 999999999999999999999999 689999999999999999999999998
Q ss_pred CCChhhhc---cccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccC
Q 009519 376 NLDPAAAP---FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAEC 452 (533)
Q Consensus 376 ~l~~~k~~---~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~ 452 (533)
+|+++|++ |+++.+ +.++|+|+|+.+|||||||+|+++|+|||||||+|++ +|+|||||||||||++|||
T Consensus 77 ~l~~~~~~~~~~~~~~~------~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~-~~~~PIIFaLSNPt~~aE~ 149 (254)
T cd00762 77 ETCPNEYHLARFANPER------ESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAE-INERPVIFALSNPTSKAEC 149 (254)
T ss_pred ccCHHHHHHHHHcCccc------ccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhh-cCCCCEEEECCCcCCcccc
Confidence 89999999 777642 3579999999999999999999999999999999975 9999999999999999999
Q ss_pred CHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCCCC
Q 009519 453 TAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPIS 532 (533)
Q Consensus 453 tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~~~ 532 (533)
||||||+||+|||||||||||+||+|+ |++++|+||||+|+|||||||+++++|++|||+||++||++||+++++++++
T Consensus 150 tpe~a~~~t~G~ai~AtGspf~pv~~~-g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~ 228 (254)
T cd00762 150 TAEEAYTATEGRAIFASGSPFHPVELN-GGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLK 228 (254)
T ss_pred CHHHHHhhcCCCEEEEECCCCCCcccC-CceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCC
Confidence 999999999999999999999999994 9999999999999999999999999999999999999999999999988754
No 12
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=100.00 E-value=2.2e-83 Score=609.75 Aligned_cols=181 Identities=61% Similarity=1.125 Sum_probs=163.0
Q ss_pred hcccchhhheeeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeec
Q 009519 106 HDRNETLYYRVLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILG 185 (533)
Q Consensus 106 ~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILG 185 (533)
|++||+|||+++.+|++|+|||+||||||+||++||++||+|+|||+|++|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC-C
Q 009519 186 LGDLGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW-P 264 (533)
Q Consensus 186 LGDlG~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~-P 264 (533)
|||+|++|||||+||++|||+||||||++|||||||+|||||+||+||+|+||||+|++|++|++|+||||+||+++| |
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CceeeeecCCCchHHHHHHHHh
Q 009519 265 KAIVQFEDFQMKWAFETLERYR 286 (533)
Q Consensus 265 ~~~I~~EDf~~~~af~iL~ryr 286 (533)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
No 13
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=100.00 E-value=1.7e-50 Score=395.52 Aligned_cols=200 Identities=33% Similarity=0.487 Sum_probs=181.1
Q ss_pred cchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC
Q 009519 296 IQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK 375 (533)
Q Consensus 296 iQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~ 375 (533)
|||||+|++||+++|+|..|+++++ +||||+|||+||.|||++|.+ .|++ +++||++|++|+++.+|.
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~---~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~ 68 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEE---VKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGRE 68 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccC---CEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccc
Confidence 7999999999999999999999999 999999999999999999975 4765 579999999999999984
Q ss_pred -CCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCH
Q 009519 376 -NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTA 454 (533)
Q Consensus 376 -~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tp 454 (533)
+|.++|++|++..+. .. ...+|.|++++ ||+|||+|+ +|.||+++++.|+ ++||||+||||++ ||++
T Consensus 69 ~~L~~~~~~la~~~~~-~~--~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~----~~~ivf~lsnP~~--e~~~ 136 (226)
T cd05311 69 DDLNPDKNEIAKETNP-EK--TGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA----KDPIVFALANPVP--EIWP 136 (226)
T ss_pred hhhhHHHHHHHHHhcc-Cc--ccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC----CCCEEEEeCCCCC--cCCH
Confidence 599999999987532 11 11479899987 999999999 8999999999994 7999999999997 9999
Q ss_pred HHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCCCC
Q 009519 455 ADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEPIS 532 (533)
Q Consensus 455 e~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~~~ 532 (533)
++|++| |..||||| +++.|+|+||+|||||||||+++++|++|||+||++||++||+++++++++
T Consensus 137 ~~A~~~--ga~i~a~G-----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~ 201 (226)
T cd05311 137 EEAKEA--GADIVATG-----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLG 201 (226)
T ss_pred HHHHHc--CCcEEEeC-----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccC
Confidence 999999 55599985 899999999999999999999999999999999999999999999998764
No 14
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.79 E-value=4.9e-08 Score=82.13 Aligned_cols=86 Identities=26% Similarity=0.367 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l 377 (533)
+||.++++++..+.+..+.+++. .+++|+|+|.+|.+++..+.+... ++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~---~~v~i~G~G~~g~~~a~~l~~~~~-----------~~v~v~~r----------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKG---KTVVVLGAGEVGKGIAKLLADEGG-----------KKVVLCDR----------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCC---CEEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcC-----------
Confidence 68999999999999999988888 999999999999999999977421 57898888
Q ss_pred ChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 378 ~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
|+||++++.++.|+++.++.| ++.|+||.++
T Consensus 56 --------------------------------di~i~~~~~~~~~~~~~~~~~----~~~~~v~~~a 86 (86)
T cd05191 56 --------------------------------DILVTATPAGVPVLEEATAKI----NEGAVVIDLA 86 (86)
T ss_pred --------------------------------CEEEEcCCCCCCchHHHHHhc----CCCCEEEecC
Confidence 999999999999998856655 5899999875
No 15
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.97 E-value=0.00019 Score=77.77 Aligned_cols=162 Identities=20% Similarity=0.238 Sum_probs=106.7
Q ss_pred cCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHH---------------------HHHHhc-------cCcee
Q 009519 241 PRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFET---------------------LERYRK-------RFCMF 292 (533)
Q Consensus 241 ~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~i---------------------L~ryr~-------~~~~F 292 (533)
+..+-+||+..+++.+ ...-|+.+| |.+..-...+ ..||+. .+|+|
T Consensus 104 ~~~~~~ey~~~~~~~l---~~~~p~iii---DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~~~~~~~l~~Pv~ 177 (425)
T PRK05476 104 KGETLEEYWECIERAL---DGHGPNMIL---DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAI 177 (425)
T ss_pred CCCCHHHHHHHHHHHh---cCCCCCEEE---ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHHHHHcCCCCCCEE
Confidence 3446688888777765 122366665 5555554433 245543 38999
Q ss_pred c----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE
Q 009519 293 N----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF 362 (533)
Q Consensus 293 n----------DDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~ 362 (533)
| |-..||+--++-|+.. .++..+.. .+++|+|+|..|.++|..+... |. +++
T Consensus 178 ~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~G---k~VlViG~G~IG~~vA~~lr~~-----Ga-------~Vi 239 (425)
T PRK05476 178 NVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAG---KVVVVAGYGDVGKGCAQRLRGL-----GA-------RVI 239 (425)
T ss_pred ecCCcccCccccccHHHHhhhHHHHHH---hccCCCCC---CEEEEECCCHHHHHHHHHHHhC-----CC-------EEE
Confidence 8 7789999877666654 34666677 9999999999999999888754 32 688
Q ss_pred EEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEe
Q 009519 363 LLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 442 (533)
Q Consensus 363 lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFa 442 (533)
++|.+- .| ...|.... ....++.++++. .|++|-+++..++|+.+.++.|. +.-|++-
T Consensus 240 V~d~dp----~r-------a~~A~~~G-----~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK----~GailiN 297 (425)
T PRK05476 240 VTEVDP----IC-------ALQAAMDG-----FRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK----DGAILAN 297 (425)
T ss_pred EEcCCc----hh-------hHHHHhcC-----CEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC----CCCEEEE
Confidence 887631 11 11111110 012358888886 89999988777889999999993 3456665
Q ss_pred cCCCCC
Q 009519 443 MSNPTM 448 (533)
Q Consensus 443 LSNPt~ 448 (533)
.+.+..
T Consensus 298 vG~~d~ 303 (425)
T PRK05476 298 IGHFDN 303 (425)
T ss_pred cCCCCC
Confidence 555543
No 16
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.60 E-value=0.001 Score=71.80 Aligned_cols=130 Identities=19% Similarity=0.300 Sum_probs=94.3
Q ss_pred cCceec----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhh
Q 009519 288 RFCMFN----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (533)
Q Consensus 288 ~~~~Fn----------DDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA 357 (533)
.+|+|+ |...||+--++-+++. .++..+.. .+++|+|+|..|.++|..+... |.
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~r---~t~~~l~G---ktVvViG~G~IG~~va~~ak~~-----Ga----- 226 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIKR---ATDVMIAG---KVAVVAGYGDVGKGCAQSLRGQ-----GA----- 226 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHHH---hcCCCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-----
Confidence 478885 7789999998877765 56666777 9999999999999999887654 32
Q ss_pred cCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCC
Q 009519 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 437 (533)
Q Consensus 358 ~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~er 437 (533)
+++++|.+ +.+..+|+... ....++.|+++. .|++|-+++.+++|+++.++.|. +.
T Consensus 227 --~ViV~d~d-----------~~R~~~A~~~G-----~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk----~G 282 (413)
T cd00401 227 --RVIVTEVD-----------PICALQAAMEG-----YEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK----DG 282 (413)
T ss_pred --EEEEEECC-----------hhhHHHHHhcC-----CEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC----CC
Confidence 57777752 23333444311 012346788876 89999999888899999999883 45
Q ss_pred CeEEecCCCCCcccCCHHHHhc
Q 009519 438 PAIFAMSNPTMNAECTAADAFK 459 (533)
Q Consensus 438 PIIFaLSNPt~~aE~tpe~A~~ 459 (533)
-+|.-.+.+. .|+.+.+...
T Consensus 283 gilvnvG~~~--~eId~~~L~~ 302 (413)
T cd00401 283 AIVCNIGHFD--VEIDVKGLKE 302 (413)
T ss_pred cEEEEeCCCC--CccCHHHHHh
Confidence 6776677663 3888887665
No 17
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.35 E-value=0.0062 Score=67.02 Aligned_cols=122 Identities=19% Similarity=0.233 Sum_probs=83.1
Q ss_pred CceeccCcchhHHHH-------HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeE
Q 009519 289 FCMFNDDIQGTAGVA-------LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (533)
Q Consensus 289 ~~~FnDDiQGTaaV~-------LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i 361 (533)
+||+|=+---|-.+. ++.+-..+|.++..+.. .+++|+|.|..|.++|+.+... |. ++
T Consensus 216 iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaG---KtVgVIG~G~IGr~vA~rL~a~-----Ga-------~V 280 (476)
T PTZ00075 216 FPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAG---KTVVVCGYGDVGKGCAQALRGF-----GA-------RV 280 (476)
T ss_pred ceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EE
Confidence 799985554444432 44445556777877777 9999999999999999998754 32 57
Q ss_pred EEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEE
Q 009519 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (533)
Q Consensus 362 ~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIF 441 (533)
+++|++-. + ...|... + ....++.|+++. .|++|-+.+..++|+++.++.|. +.-|+.
T Consensus 281 iV~e~dp~----~-------a~~A~~~----G-~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK----pGAiLI 338 (476)
T PTZ00075 281 VVTEIDPI----C-------ALQAAME----G-YQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK----NNAIVG 338 (476)
T ss_pred EEEeCCch----h-------HHHHHhc----C-ceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC----CCcEEE
Confidence 77766311 1 0001110 0 012468899887 99999888778999999999994 566777
Q ss_pred ecCCCC
Q 009519 442 AMSNPT 447 (533)
Q Consensus 442 aLSNPt 447 (533)
-.+...
T Consensus 339 NvGr~d 344 (476)
T PTZ00075 339 NIGHFD 344 (476)
T ss_pred EcCCCc
Confidence 666664
No 18
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.35 E-value=0.0023 Score=69.03 Aligned_cols=129 Identities=22% Similarity=0.290 Sum_probs=88.9
Q ss_pred cCceec----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhh
Q 009519 288 RFCMFN----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (533)
Q Consensus 288 ~~~~Fn----------DDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA 357 (533)
.+|+|+ |.-.||+--++-+++ |.++..+.. .+++|+|+|..|.++|..+... |.
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~G---k~VvViG~G~IG~~vA~~ak~~-----Ga----- 219 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAG---KTVVVAGYGWCGKGIAMRARGM-----GA----- 219 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCc---CEEEEECCCHHHHHHHHHHhhC-----cC-----
Confidence 379997 778999987776655 456666777 9999999999999999987754 32
Q ss_pred cCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCC
Q 009519 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 437 (533)
Q Consensus 358 ~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~er 437 (533)
+++++|.+- .+...|+.. + ....++.|+++. .|++|-+++..++++++.++.|. +.
T Consensus 220 --~ViV~d~dp-----------~r~~~A~~~----G-~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK----~G 275 (406)
T TIGR00936 220 --RVIVTEVDP-----------IRALEAAMD----G-FRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK----DG 275 (406)
T ss_pred --EEEEEeCCh-----------hhHHHHHhc----C-CEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC----CC
Confidence 688887631 111122211 0 012357888876 89999888777889988888883 45
Q ss_pred CeEEecCCCCCcccCCHHHHh
Q 009519 438 PAIFAMSNPTMNAECTAADAF 458 (533)
Q Consensus 438 PIIFaLSNPt~~aE~tpe~A~ 458 (533)
-||.-.+.... |+.-++..
T Consensus 276 ailiN~G~~~~--eId~~aL~ 294 (406)
T TIGR00936 276 AIVANIGHFDV--EIDVKALE 294 (406)
T ss_pred cEEEEECCCCc--eeCHHHHH
Confidence 67776776654 66655443
No 19
>PLN02494 adenosylhomocysteinase
Probab=97.22 E-value=0.0029 Score=69.53 Aligned_cols=131 Identities=19% Similarity=0.260 Sum_probs=93.6
Q ss_pred cCceec----------cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhh
Q 009519 288 RFCMFN----------DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (533)
Q Consensus 288 ~~~~Fn----------DDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA 357 (533)
.+|++| |-..||+--++-|++ |.|+..+.. .+++|+|.|..|.++|..+... |.
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaG---KtVvViGyG~IGr~vA~~aka~-----Ga----- 278 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAG---KVAVICGYGDVGKGCAAAMKAA-----GA----- 278 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCC---CEEEEECCCHHHHHHHHHHHHC-----CC-----
Confidence 378776 557899888888877 457776777 9999999999999999998643 43
Q ss_pred cCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCC
Q 009519 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVK 437 (533)
Q Consensus 358 ~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~er 437 (533)
+|+++|.+. .+...|.... ....++.|+++. .|++|=+++..++++++.++.|. +.
T Consensus 279 --~VIV~e~dp-----------~r~~eA~~~G-----~~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK----~G 334 (477)
T PLN02494 279 --RVIVTEIDP-----------ICALQALMEG-----YQVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK----NN 334 (477)
T ss_pred --EEEEEeCCc-----------hhhHHHHhcC-----CeeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC----CC
Confidence 588777631 1111221110 011358888877 89999877767888999999993 57
Q ss_pred CeEEecCCCCCcccCCHHHHhcc
Q 009519 438 PAIFAMSNPTMNAECTAADAFKH 460 (533)
Q Consensus 438 PIIFaLSNPt~~aE~tpe~A~~w 460 (533)
-++.-.+.+.. |+.-+...++
T Consensus 335 AiLiNvGr~~~--eID~~aL~~~ 355 (477)
T PLN02494 335 AIVCNIGHFDN--EIDMLGLETY 355 (477)
T ss_pred CEEEEcCCCCC--ccCHHHHhhc
Confidence 78888888765 7777666554
No 20
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.06 E-value=0.0065 Score=60.23 Aligned_cols=138 Identities=19% Similarity=0.245 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
||-=+..++-.+++..+.+|+. .||+|.|.|..|.++|++|.+. |. +-+.+.|++|-+++. .|+
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g---~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~--Gld 65 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEG---LTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP--GIT 65 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC--CCC
Confidence 4444566677788888877777 9999999999999999999874 33 578899999998887 565
Q ss_pred hhh-hccccccCCcCCcc--CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCH
Q 009519 379 PAA-APFAKDPGDFMGLR--EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTA 454 (533)
Q Consensus 379 ~~k-~~~A~~~~~~~~~~--~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tp 454 (533)
..+ ..+.+........+ +..+= +.+..++.||||=++. .+.+|++..+.+ .-++|..-+| |+.. .+
T Consensus 66 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~DVlipaA~-~~~i~~~~a~~l-----~a~~V~e~AN~p~t~---~a 135 (217)
T cd05211 66 TEELINYAVALGGSARVKVQDYFPG-EAILGLDVDIFAPCAL-GNVIDLENAKKL-----KAKVVAEGANNPTTD---EA 135 (217)
T ss_pred HHHHHHHHHhhCCccccCcccccCc-ccceeccccEEeeccc-cCccChhhHhhc-----CccEEEeCCCCCCCH---HH
Confidence 432 22222111000000 01111 2344557899997775 799999999998 3679998888 8872 45
Q ss_pred HHHhcccCC
Q 009519 455 ADAFKHAGE 463 (533)
Q Consensus 455 e~A~~wt~G 463 (533)
++.++- .|
T Consensus 136 ~~~L~~-~G 143 (217)
T cd05211 136 LRILHE-RG 143 (217)
T ss_pred HHHHHH-CC
Confidence 666653 45
No 21
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.84 E-value=0.0079 Score=64.74 Aligned_cols=126 Identities=22% Similarity=0.333 Sum_probs=83.1
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 297 QGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
.+.-+|..+++--|.+..+. +.+ .+++|+|+|..|..++..|... |. .+|+++|+.. .+
T Consensus 158 ~~~vSv~~~Av~la~~~~~~-l~~---~~VlViGaG~iG~~~a~~L~~~-----G~------~~V~v~~rs~----~r-- 216 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFGS-LKG---KKALLIGAGEMGELVAKHLLRK-----GV------GKILIANRTY----ER-- 216 (417)
T ss_pred CCCcCHHHHHHHHHHHHhCC-ccC---CEEEEECChHHHHHHHHHHHHC-----CC------CEEEEEeCCH----HH--
Confidence 55666777777666666553 555 8999999999999999888653 43 4788887731 11
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCC-CCCCHHHHHHhhhcCCCCC-eEEecCCCCCcccCCH
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKP-AIFAMSNPTMNAECTA 454 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Fteevv~~Ma~~~~erP-IIFaLSNPt~~aE~tp 454 (533)
...+|+.-.. .. -...++.+++.. .|++|-+++.+ ..+++++++.+.. ...+| +|+-+++|-. +.|
T Consensus 217 ----a~~la~~~g~-~~-i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~-~~~~~~~viDla~Prd---id~ 284 (417)
T TIGR01035 217 ----AEDLAKELGG-EA-VKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALR-ERTRPLFIIDIAVPRD---VDP 284 (417)
T ss_pred ----HHHHHHHcCC-eE-eeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHh-cCCCCeEEEEeCCCCC---CCh
Confidence 1223322100 00 012357888876 89999887644 5799999998742 11256 8899999984 555
Q ss_pred H
Q 009519 455 A 455 (533)
Q Consensus 455 e 455 (533)
+
T Consensus 285 ~ 285 (417)
T TIGR01035 285 A 285 (417)
T ss_pred h
Confidence 4
No 22
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.78 E-value=0.027 Score=54.02 Aligned_cols=143 Identities=20% Similarity=0.263 Sum_probs=86.9
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 297 QGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
.||+--++-|++. .|+..|.- .++|++|-|--|-|+|+.+..... ++.++|.+
T Consensus 3 yG~g~S~~d~i~r---~t~~~l~G---k~vvV~GYG~vG~g~A~~lr~~Ga------------~V~V~e~D--------- 55 (162)
T PF00670_consen 3 YGTGQSLVDGIMR---ATNLMLAG---KRVVVIGYGKVGKGIARALRGLGA------------RVTVTEID--------- 55 (162)
T ss_dssp HHHHHHHHHHHHH---HH-S--TT---SEEEEE--SHHHHHHHHHHHHTT-------------EEEEE-SS---------
T ss_pred cccchhHHHHHHh---cCceeeCC---CEEEEeCCCcccHHHHHHHhhCCC------------EEEEEECC---------
Confidence 5777777777774 67888877 999999999999999999987644 77777652
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHH
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAAD 456 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~ 456 (533)
+.+.-=|.- +| -+..+++|+++. +|++|-+++..++.+.|.++.|. +.-|+.-..-= ..|+.-+.
T Consensus 56 --Pi~alqA~~----dG-f~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk----dgail~n~Gh~--d~Eid~~~ 120 (162)
T PF00670_consen 56 --PIRALQAAM----DG-FEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK----DGAILANAGHF--DVEIDVDA 120 (162)
T ss_dssp --HHHHHHHHH----TT--EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS-----TTEEEEESSSS--TTSBTHHH
T ss_pred --hHHHHHhhh----cC-cEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc----CCeEEeccCcC--ceeEeecc
Confidence 333222221 11 123469999987 99999999888899999999993 56666655432 33888877
Q ss_pred HhcccCCcEEEecCCCCcceecCCCee
Q 009519 457 AFKHAGENIVFASGSPFENVDLGNGKI 483 (533)
Q Consensus 457 A~~wt~Grai~AtGSPf~pv~~~~G~~ 483 (533)
..+. +.-..-..+.-..++++|||.
T Consensus 121 L~~~--~~~~~~v~~~v~~y~l~~G~~ 145 (162)
T PF00670_consen 121 LEAN--AVEREEVRPQVDRYTLPDGRR 145 (162)
T ss_dssp HHTC--TSEEEEEETTEEEEEETTSEE
T ss_pred cccc--CcEEEEcCCCeeEEEeCCCCE
Confidence 6554 222222232333344555664
No 23
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.75 E-value=0.0093 Score=61.60 Aligned_cols=138 Identities=20% Similarity=0.260 Sum_probs=87.3
Q ss_pred chHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChh
Q 009519 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (533)
Q Consensus 276 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~ 355 (533)
.+|+++=++.|.+.-+. .+-.+|+.+++-.|.+..|. +.. .||+|+|+|..|..+++.+... |.
T Consensus 139 ~~a~~~~k~vr~et~i~----~~~~sv~~~Av~~a~~~~~~-l~~---~~V~ViGaG~iG~~~a~~L~~~-----g~--- 202 (311)
T cd05213 139 QKAIKVGKRVRTETGIS----RGAVSISSAAVELAEKIFGN-LKG---KKVLVIGAGEMGELAAKHLAAK-----GV--- 202 (311)
T ss_pred HHHHHHHHHHhhhcCCC----CCCcCHHHHHHHHHHHHhCC-ccC---CEEEEECcHHHHHHHHHHHHHc-----CC---
Confidence 57888888888775444 33455666666666655554 566 8999999999999998888652 32
Q ss_pred hhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCC
Q 009519 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDS 435 (533)
Q Consensus 356 eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~ 435 (533)
++|+++|+. .+ ....+|+.-.... ....++.++++. +|++|-+++.+.. +++++.+.+...
T Consensus 203 ---~~V~v~~r~----~~------ra~~la~~~g~~~--~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~ 263 (311)
T cd05213 203 ---AEITIANRT----YE------RAEELAKELGGNA--VPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRS 263 (311)
T ss_pred ---CEEEEEeCC----HH------HHHHHHHHcCCeE--EeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCC
Confidence 579999873 11 1122333211000 011357788877 8999998875555 676666533121
Q ss_pred -CCCeEEecCCCCC
Q 009519 436 -VKPAIFAMSNPTM 448 (533)
Q Consensus 436 -erPIIFaLSNPt~ 448 (533)
..-+|+=||||-.
T Consensus 264 ~~~~~viDlavPrd 277 (311)
T cd05213 264 GKPRLIVDLAVPRD 277 (311)
T ss_pred CCCeEEEEeCCCCC
Confidence 2347778999975
No 24
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.72 E-value=0.063 Score=59.00 Aligned_cols=190 Identities=19% Similarity=0.176 Sum_probs=129.2
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCch--HHHHHHHHhcc---C-ceec----------cCcchhHHHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKW--AFETLERYRKR---F-CMFN----------DDIQGTAGVALA 305 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~~---~-~~Fn----------DDiQGTaaV~LA 305 (533)
.+..|-..|...||..+.+.. |..-|-=.|++..- ---+.+.|+.- . .|+- +--..||-=++.
T Consensus 143 ~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~ 222 (454)
T PTZ00079 143 KSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVY 222 (454)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHH
Confidence 566777899999999998766 78888888888522 22356666542 1 2211 112237777788
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEeccCccccCCCCCChhhh--
Q 009519 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA-- 382 (533)
Q Consensus 306 gli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~-lvD~~GLi~~~r~~l~~~k~-- 382 (533)
++-.+++..+.+|+. .||+|-|.|..|...|+.|.+... +++ +.|++|-|++.. .|+..+.
T Consensus 223 ~~~~~l~~~~~~l~G---k~VaVqG~GnVg~~aa~~L~e~Ga------------kVVavSD~~G~iy~~~-Gld~~~l~~ 286 (454)
T PTZ00079 223 FVLEVLKKLNDSLEG---KTVVVSGSGNVAQYAVEKLLQLGA------------KVLTMSDSDGYIHEPN-GFTKEKLAY 286 (454)
T ss_pred HHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHCCC------------EEEEEEcCCCcEECCC-CCCHHHHHH
Confidence 888999999999988 999999999999999999976533 566 999999999875 4544332
Q ss_pred -------------ccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 009519 383 -------------PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (533)
Q Consensus 383 -------------~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~ 448 (533)
.|+.... + ....+-.+ +-.++.||||=+.. .+.+|++-++.+.+ +.-.+|.=-+| |+.
T Consensus 287 l~~~k~~~~g~i~~~~~~~~---~-a~~~~~~~-~~~~~cDI~iPcA~-~n~I~~~~a~~l~~--~~ak~V~EgAN~p~t 358 (454)
T PTZ00079 287 LMDLKNVKRGRLKEYAKHSS---T-AKYVPGKK-PWEVPCDIAFPCAT-QNEINLEDAKLLIK--NGCKLVAEGANMPTT 358 (454)
T ss_pred HHHHHhhcCCcHHhhhhccC---C-cEEeCCcC-cccCCccEEEeccc-cccCCHHHHHHHHH--cCCeEEEecCCCCCC
Confidence 1211000 0 00001111 22367999998776 69999999999843 45679998998 776
Q ss_pred cccCCHHHHhc
Q 009519 449 NAECTAADAFK 459 (533)
Q Consensus 449 ~aE~tpe~A~~ 459 (533)
. .+++.++
T Consensus 359 ~---eA~~~L~ 366 (454)
T PTZ00079 359 I---EATHLFK 366 (454)
T ss_pred H---HHHHHHH
Confidence 3 3455554
No 25
>PLN02477 glutamate dehydrogenase
Probab=96.56 E-value=0.07 Score=57.93 Aligned_cols=191 Identities=21% Similarity=0.244 Sum_probs=127.6
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCchH--HHHHHHHhcc----------Ccee----ccCcchhHHHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKR----------FCMF----NDDIQGTAGVALA 305 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~a--f~iL~ryr~~----------~~~F----nDDiQGTaaV~LA 305 (533)
.+..|-..+...|+.++.... |..-|-=+|++..-. --+.++|+.. -|+. .+--.-||-=+..
T Consensus 112 ~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~ 191 (410)
T PLN02477 112 LSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVF 191 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHH
Confidence 556788889999999998876 555566678876432 2356777651 1221 2333458877788
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEeccCccccCCCCCChhhh-c
Q 009519 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKNLDPAAA-P 383 (533)
Q Consensus 306 gli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~-lvD~~GLi~~~r~~l~~~k~-~ 383 (533)
++-.+++..|.+|+. .||+|.|.|..|.+.|++|.+. |. +|+ +.|++|-|++.. .|+..+. .
T Consensus 192 ~~~~~~~~~g~~l~g---~~VaIqGfGnVG~~~A~~L~e~-----Ga-------kVVaVsD~~G~iy~~~-GLD~~~L~~ 255 (410)
T PLN02477 192 ATEALLAEHGKSIAG---QTFVIQGFGNVGSWAAQLIHEK-----GG-------KIVAVSDITGAVKNEN-GLDIPALRK 255 (410)
T ss_pred HHHHHHHHcCCCccC---CEEEEECCCHHHHHHHHHHHHc-----CC-------EEEEEECCCCeEECCC-CCCHHHHHH
Confidence 888889888888888 9999999999999999988664 42 566 899999998865 3442221 1
Q ss_pred cccccCCcCCc--cCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCHHHHhc
Q 009519 384 FAKDPGDFMGL--REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADAFK 459 (533)
Q Consensus 384 ~A~~~~~~~~~--~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpe~A~~ 459 (533)
+.+......+. ....+-.+++. .+.||||=+. .++.+|++.+..+ .-.||.--+| |+. .| +++.++
T Consensus 256 ~k~~~g~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i-----~ak~I~egAN~p~t-~e--a~~~L~ 324 (410)
T PLN02477 256 HVAEGGGLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV-----KAKFIVEAANHPTD-PE--ADEILR 324 (410)
T ss_pred HHHhcCchhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc-----CCcEEEeCCCCCCC-HH--HHHHHH
Confidence 11110000000 01122334333 3799999766 4799999999987 4679999999 763 23 455555
No 26
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.52 E-value=0.013 Score=55.96 Aligned_cols=86 Identities=15% Similarity=0.308 Sum_probs=65.1
Q ss_pred HHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcccccc
Q 009519 310 TVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP 388 (533)
Q Consensus 310 Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~ 388 (533)
.++-...+|++ .|++|+|+|. .|..+|+.|... | .++++++++-
T Consensus 34 l~~~~~~~l~g---k~vlViG~G~~~G~~~a~~L~~~-----g-------~~V~v~~r~~-------------------- 78 (168)
T cd01080 34 LLKRYGIDLAG---KKVVVVGRSNIVGKPLAALLLNR-----N-------ATVTVCHSKT-------------------- 78 (168)
T ss_pred HHHHcCCCCCC---CEEEEECCcHHHHHHHHHHHhhC-----C-------CEEEEEECCc--------------------
Confidence 33444455666 9999999997 599899888763 3 1588888630
Q ss_pred CCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 389 GDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 389 ~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
.+|.+.++. .|++|..++.+..|++++++ +.-+|+=++.|-.
T Consensus 79 ---------~~l~~~l~~--aDiVIsat~~~~ii~~~~~~-------~~~viIDla~prd 120 (168)
T cd01080 79 ---------KNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK-------PGAVVIDVGINRV 120 (168)
T ss_pred ---------hhHHHHHhh--CCEEEEcCCCCceecHHHcc-------CCeEEEEccCCCc
Confidence 137778888 99999999988899999654 3568899999874
No 27
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.42 E-value=0.012 Score=62.29 Aligned_cols=114 Identities=20% Similarity=0.257 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l 377 (533)
|+++...++--+.+..|..+++ .+++|.|| |+.|..++++|... .|. +++++++++ . ..+
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~---k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~--~rl 194 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSK---ATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----Q--ERL 194 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCC---CEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----H--HHH
Confidence 7788888888888888988888 99999999 89999999999752 232 478888763 1 123
Q ss_pred ChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCC--CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV--FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 378 ~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~--Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
...+.++... ...+|.+++.. +|++|=+++.+.. ++++.++ +.-+|+=++.|-.
T Consensus 195 ~~La~el~~~--------~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l~-------~~~~viDiAvPRD 250 (340)
T PRK14982 195 QELQAELGGG--------KILSLEEALPE--ADIVVWVASMPKGVEIDPETLK-------KPCLMIDGGYPKN 250 (340)
T ss_pred HHHHHHhccc--------cHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHhC-------CCeEEEEecCCCC
Confidence 2223333211 12458888887 9999987776433 6775442 3346666999976
No 28
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.42 E-value=0.012 Score=63.36 Aligned_cols=120 Identities=20% Similarity=0.276 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
..+|+.+|+--|.+..+ ++.. .+++|+|+|..|..++..+... |. ++|+++|+.. .|
T Consensus 162 ~~Sv~~~Av~~a~~~~~-~~~~---~~vlViGaG~iG~~~a~~L~~~-----G~------~~V~v~~r~~----~r---- 218 (423)
T PRK00045 162 AVSVASAAVELAKQIFG-DLSG---KKVLVIGAGEMGELVAKHLAEK-----GV------RKITVANRTL----ER---- 218 (423)
T ss_pred CcCHHHHHHHHHHHhhC-CccC---CEEEEECchHHHHHHHHHHHHC-----CC------CeEEEEeCCH----HH----
Confidence 45666666554444444 4555 8999999999999999888643 43 5799887731 11
Q ss_pred hhhhccccccC-CcCCccCCCCHHHHhcccCCcEEEEeccCC-CCCCHHHHHHhhhcC-CCCCeEEecCCCCC
Q 009519 379 PAAAPFAKDPG-DFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESD-SVKPAIFAMSNPTM 448 (533)
Q Consensus 379 ~~k~~~A~~~~-~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Fteevv~~Ma~~~-~erPIIFaLSNPt~ 448 (533)
...+++.-. .. ....++.+++.. +|++|-+++.+ ..+++++++.+...- ....+|+=||+|-.
T Consensus 219 --a~~la~~~g~~~---~~~~~~~~~l~~--aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prd 284 (423)
T PRK00045 219 --AEELAEEFGGEA---IPLDELPEALAE--ADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPRD 284 (423)
T ss_pred --HHHHHHHcCCcE---eeHHHHHHHhcc--CCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCC
Confidence 112332210 00 012346777776 89999987755 578999999874211 12358889999984
No 29
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.41 E-value=0.0021 Score=58.47 Aligned_cols=105 Identities=19% Similarity=0.333 Sum_probs=65.7
Q ss_pred CCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCC
Q 009519 319 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGA 398 (533)
Q Consensus 319 ~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~ 398 (533)
.+|.+.|++|+|||.+|-+++..|... |. ++|+++++. .+| .......| ....+. .....
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~-----g~------~~i~i~nRt----~~r--a~~l~~~~--~~~~~~-~~~~~ 67 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAAL-----GA------KEITIVNRT----PER--AEALAEEF--GGVNIE-AIPLE 67 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHT-----TS------SEEEEEESS----HHH--HHHHHHHH--TGCSEE-EEEGG
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHc-----CC------CEEEEEECC----HHH--HHHHHHHc--Cccccc-eeeHH
Confidence 344459999999999999998888764 44 589999872 222 22222222 100000 01234
Q ss_pred CHHHHhcccCCcEEEEeccCC-CCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 399 SLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~-g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++.+.++. .|++|-+++.+ -.++++.++.... ...+||=||+|-.
T Consensus 68 ~~~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~---~~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 68 DLEEALQE--ADIVINATPSGMPIITEEMLKKASK---KLRLVIDLAVPRD 113 (135)
T ss_dssp GHCHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCH---HCSEEEES-SS-S
T ss_pred HHHHHHhh--CCeEEEecCCCCcccCHHHHHHHHh---hhhceeccccCCC
Confidence 57777777 89999988755 3789988876521 1249999999976
No 30
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.34 E-value=0.023 Score=58.55 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhc
Q 009519 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP 383 (533)
Q Consensus 304 LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~ 383 (533)
-+++..+++..+..+.. .|++|+|+|.+|..++..+... | -+++++|++- .+..
T Consensus 136 egav~~a~~~~~~~l~g---~kvlViG~G~iG~~~a~~L~~~-----G-------a~V~v~~r~~-----------~~~~ 189 (296)
T PRK08306 136 EGAIMMAIEHTPITIHG---SNVLVLGFGRTGMTLARTLKAL-----G-------ANVTVGARKS-----------AHLA 189 (296)
T ss_pred HHHHHHHHHhCCCCCCC---CEEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEECCH-----------HHHH
Confidence 33566677777777777 9999999999999999888753 3 2789888851 1111
Q ss_pred cccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCC
Q 009519 384 FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGE 463 (533)
Q Consensus 384 ~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~G 463 (533)
.++...- . .....+|.+.++. .|++|-++ ....+++++++.|. +..+|+=++...- .|..+.|.+ .|
T Consensus 190 ~~~~~G~-~-~~~~~~l~~~l~~--aDiVI~t~-p~~~i~~~~l~~~~----~g~vIIDla~~pg--gtd~~~a~~--~G 256 (296)
T PRK08306 190 RITEMGL-S-PFHLSELAEEVGK--IDIIFNTI-PALVLTKEVLSKMP----PEALIIDLASKPG--GTDFEYAEK--RG 256 (296)
T ss_pred HHHHcCC-e-eecHHHHHHHhCC--CCEEEECC-ChhhhhHHHHHcCC----CCcEEEEEccCCC--CcCeeehhh--CC
Confidence 2221100 0 0012357788876 89999865 35778999999994 5677775654333 355544433 34
Q ss_pred c-EEEecCCC
Q 009519 464 N-IVFASGSP 472 (533)
Q Consensus 464 r-ai~AtGSP 472 (533)
. ++.++|-|
T Consensus 257 v~~~~~~~lp 266 (296)
T PRK08306 257 IKALLAPGLP 266 (296)
T ss_pred eEEEEECCCC
Confidence 3 34456533
No 31
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.26 E-value=0.017 Score=59.49 Aligned_cols=109 Identities=17% Similarity=0.289 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
..+-.|-.|++..++..+.+++. ++++++|+|- +|..+|.+|... | | .+.+|+++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~G---k~vvViG~gg~vGkpia~~L~~~-----g-----a--tVtv~~~~--------- 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAG---KHAVVVGRSAILGKPMAMMLLNA-----N-----A--TVTICHSR--------- 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCC---CEEEEECCcHHHHHHHHHHHHhC-----C-----C--EEEEEeCC---------
Confidence 44677779999999999999999 9999999997 999999998653 3 2 68888752
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEec-CCCCC--cc-cC
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAM-SNPTM--NA-EC 452 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaL-SNPt~--~a-E~ 452 (533)
..+|.+.+++ +|++|-+.+.++.|+.++++ +.-+|+=. .||.. .. ++
T Consensus 193 --------------------t~~L~~~~~~--aDIvI~AtG~~~~v~~~~lk-------~gavViDvg~n~~~~~~~GDv 243 (283)
T PRK14192 193 --------------------TQNLPELVKQ--ADIIVGAVGKPELIKKDWIK-------QGAVVVDAGFHPRDGGGVGDI 243 (283)
T ss_pred --------------------chhHHHHhcc--CCEEEEccCCCCcCCHHHcC-------CCCEEEEEEEeecCCCCcccc
Confidence 0237777776 99999999999999998764 44566554 36631 11 56
Q ss_pred CHHHHhc
Q 009519 453 TAADAFK 459 (533)
Q Consensus 453 tpe~A~~ 459 (533)
.+|++.+
T Consensus 244 d~~~~~~ 250 (283)
T PRK14192 244 ELQGIEE 250 (283)
T ss_pred cHHHhhc
Confidence 6666655
No 32
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.07 E-value=0.14 Score=52.70 Aligned_cols=175 Identities=14% Similarity=0.218 Sum_probs=107.2
Q ss_pred HHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhccCcee------ccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceE
Q 009519 253 DEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMF------NDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKI 326 (533)
Q Consensus 253 defv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~~~~F------nDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~ri 326 (533)
+|+++.+. ...+-+==+.+++-....++ ..+.++ |=-+..+-.++=.++.-+++..+..+.+ .++
T Consensus 84 ~~~l~~~~----~~~~~~~G~~~~~l~~~a~~--~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~~l~g---k~v 154 (287)
T TIGR02853 84 PELLESTK----GHCTIYVGISNPYLEQLAAD--AGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDFTIHG---SNV 154 (287)
T ss_pred HHHHHhcC----CCCEEEEecCCHHHHHHHHH--CCCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCCCCCC---CEE
Confidence 45665555 23333444444443332222 224444 3345666677777777888888888887 999
Q ss_pred EEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcc
Q 009519 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRK 406 (533)
Q Consensus 327 v~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~ 406 (533)
+|+|+|.+|..+|+.+... |. +++++|++. . .+...+ .+ .... ....+|.+.+++
T Consensus 155 ~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~--~~~~~~-~~--g~~~----~~~~~l~~~l~~ 209 (287)
T TIGR02853 155 MVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----A--DLARIT-EM--GLIP----FPLNKLEEKVAE 209 (287)
T ss_pred EEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----H--HHHHHH-HC--CCee----ecHHHHHHHhcc
Confidence 9999999999999999754 42 688888741 1 111110 00 0000 012357888876
Q ss_pred cCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCHHHHhcccCCcEEEecCCC
Q 009519 407 VKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAADAFKHAGENIVFASGSP 472 (533)
Q Consensus 407 vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpe~A~~wt~Grai~AtGSP 472 (533)
.|++|=.. ..+.++++.++.|. +..+|+=+|. |- ++..+.|.+. .-+++.+-|-|
T Consensus 210 --aDiVint~-P~~ii~~~~l~~~k----~~aliIDlas~Pg---~tdf~~Ak~~-G~~a~~~~glP 265 (287)
T TIGR02853 210 --IDIVINTI-PALVLTADVLSKLP----KHAVIIDLASKPG---GTDFEYAKKR-GIKALLAPGLP 265 (287)
T ss_pred --CCEEEECC-ChHHhCHHHHhcCC----CCeEEEEeCcCCC---CCCHHHHHHC-CCEEEEeCCCC
Confidence 89999654 34678999999883 4678886664 53 5777665553 34677777644
No 33
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.02 E-value=0.23 Score=54.65 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=125.2
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCc--hHHHHHHHHhccC----cee----------ccCcchhHHHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMK--WAFETLERYRKRF----CMF----------NDDIQGTAGVALA 305 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~--~af~iL~ryr~~~----~~F----------nDDiQGTaaV~LA 305 (533)
.+-.|...+.-.||..+.... |..-|-=+|++.. .---+.+.|+..- -|| .+--..||-=+.-
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~ 213 (444)
T PRK14031 134 KSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIY 213 (444)
T ss_pred CCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHH
Confidence 567788999999999999876 8888888898763 3334677776431 233 2334457877788
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccc
Q 009519 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFA 385 (533)
Q Consensus 306 gli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A 385 (533)
++-.+++..|.+|+. +||+|-|.|..|...|+.|.++.. +=+-+.|++|-|++.. .|+..+..|-
T Consensus 214 ~~~~~~~~~g~~l~g---~rVaVQGfGNVG~~aA~~L~e~GA-----------kVVaVSD~~G~iy~~~-Gld~~~l~~~ 278 (444)
T PRK14031 214 FLMEMLKTKGTDLKG---KVCLVSGSGNVAQYTAEKVLELGG-----------KVVTMSDSDGYIYDPD-GIDREKLDYI 278 (444)
T ss_pred HHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHCCC-----------EEEEEECCCCeEECCC-CCCHHHHHHH
Confidence 888889988988888 999999999999999999987543 3355699999888654 4555443221
Q ss_pred cc-----cCCcCCc-----cCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CC
Q 009519 386 KD-----PGDFMGL-----REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PT 447 (533)
Q Consensus 386 ~~-----~~~~~~~-----~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt 447 (533)
.. .....+. ....+-.+ +-.++.|+||=+.. .+.+|++.++.+.+..+ -+|.--+| |+
T Consensus 279 ~~~k~~~~~~v~~~~~~~ga~~i~~d~-~~~~~cDIliPaAl-~n~I~~~na~~l~a~g~--~~V~EgAN~P~ 347 (444)
T PRK14031 279 MELKNLYRGRIREYAEKYGCKYVEGAR-PWGEKGDIALPSAT-QNELNGDDARQLVANGV--IAVSEGANMPS 347 (444)
T ss_pred HHHHhhcCCchhhhHhhcCCEEcCCcc-cccCCCcEEeeccc-ccccCHHHHHHHHhcCC--eEEECCCCCCC
Confidence 10 0000000 00011112 11257899996665 79999999999943111 37888888 54
No 34
>PRK09414 glutamate dehydrogenase; Provisional
Probab=95.99 E-value=0.16 Score=55.85 Aligned_cols=192 Identities=19% Similarity=0.184 Sum_probs=129.0
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCch--HHHHHHHHhccC----------cee----ccCcchhHHHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKW--AFETLERYRKRF----------CMF----NDDIQGTAGVALA 305 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~--af~iL~ryr~~~----------~~F----nDDiQGTaaV~LA 305 (533)
.+..|-..|...|+.++...+ |..-|-=+|++..- ---+.++|+.-. |+. .+--..||-=+..
T Consensus 138 ~s~~Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~ 217 (445)
T PRK09414 138 KSDAEIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVY 217 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHH
Confidence 566788899999999999887 77788888988532 233667877431 211 1233457777788
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEE-eccCccccCCCCCChh----
Q 009519 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL-DKDGLITKERKNLDPA---- 380 (533)
Q Consensus 306 gli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lv-D~~GLi~~~r~~l~~~---- 380 (533)
++..+++..+.+|+. .||+|.|-|..|...|++|.+. |. +|+-+ |++|-|+... .|+..
T Consensus 218 ~~~~~~~~~~~~l~g---~rVaIqGfGnVG~~~A~~L~~~-----Ga-------kVVavsDs~G~iyn~~-GLD~~~L~~ 281 (445)
T PRK09414 218 FAEEMLKARGDSFEG---KRVVVSGSGNVAIYAIEKAQQL-----GA-------KVVTCSDSSGYVYDEE-GIDLEKLKE 281 (445)
T ss_pred HHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCceEECCC-CCCHHHHHH
Confidence 888888888888888 9999999999999999999653 43 55555 9999998865 34322
Q ss_pred -hhc----cccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCH
Q 009519 381 -AAP----FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTA 454 (533)
Q Consensus 381 -k~~----~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tp 454 (533)
|.. +..-... .+ ....+-.+ +..++.||||=+.. .+.+|++-...+. .+.-.||.=-+| |+. .| +
T Consensus 282 ~k~~~~~~l~~~~~~-~~-~~~i~~~~-i~~~d~DVliPaAl-~n~It~~~a~~i~--~~~akiIvEgAN~p~t-~~--A 352 (445)
T PRK09414 282 IKEVRRGRISEYAEE-FG-AEYLEGGS-PWSVPCDIALPCAT-QNELDEEDAKTLI--ANGVKAVAEGANMPST-PE--A 352 (445)
T ss_pred HHHhcCCchhhhhhh-cC-CeecCCcc-ccccCCcEEEecCC-cCcCCHHHHHHHH--HcCCeEEEcCCCCCCC-HH--H
Confidence 211 1100000 00 00112222 33467999997775 8999999999983 245679999998 773 22 4
Q ss_pred HHHhc
Q 009519 455 ADAFK 459 (533)
Q Consensus 455 e~A~~ 459 (533)
++++.
T Consensus 353 ~~~L~ 357 (445)
T PRK09414 353 IEVFL 357 (445)
T ss_pred HHHHH
Confidence 45554
No 35
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.93 E-value=0.08 Score=54.11 Aligned_cols=139 Identities=12% Similarity=0.106 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE-EEeccCccccCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF-LLDKDGLITKERKN 376 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~-lvD~~GLi~~~r~~ 376 (533)
.||-=+.-++-.+++..+.+|+. .||+|-|-|..|.+.|++|.+. |. +++ +.|++|-|++.. .
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g---~~vaIqGfGnVG~~~a~~L~e~-----Ga-------kvvaVsD~~G~i~~~~-G 79 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKG---KRVAISGSGNVAQYAAEKLLEL-----GA-------KVVTLSDSKGYVYDPD-G 79 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEECCCceEECCC-C
Confidence 36666677777888888888888 9999999999999999999764 43 555 999999998865 3
Q ss_pred CChhhhc--c---cccc---CCcC-C--ccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 377 LDPAAAP--F---AKDP---GDFM-G--LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 377 l~~~k~~--~---A~~~---~~~~-~--~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
|+..+.. + .+.. .... . .....+-.|.. ..+.||||=+. ..+.+|++-+..+. .+.-.||.--+|
T Consensus 80 ld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcA-l~~~I~~~na~~i~--~~~ak~I~EgAN 155 (254)
T cd05313 80 FTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCA-TQNEVDAEDAKLLV--KNGCKYVAEGAN 155 (254)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEecc-ccccCCHHHHHHHH--HcCCEEEEeCCC
Confidence 4422110 0 0000 0000 0 00011222222 35799999776 47999999999994 356789999999
Q ss_pred -CCCcccCCHHHHhc
Q 009519 446 -PTMNAECTAADAFK 459 (533)
Q Consensus 446 -Pt~~aE~tpe~A~~ 459 (533)
|+.. .+++.++
T Consensus 156 ~p~t~---~a~~~L~ 167 (254)
T cd05313 156 MPCTA---EAIEVFR 167 (254)
T ss_pred CCCCH---HHHHHHH
Confidence 8752 3445444
No 36
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.89 E-value=0.46 Score=52.29 Aligned_cols=194 Identities=16% Similarity=0.142 Sum_probs=128.4
Q ss_pred CChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCchH--HHHHHHHhcc----Cceec----------cCcchhHHHHHH
Q 009519 243 LEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMKWA--FETLERYRKR----FCMFN----------DDIQGTAGVALA 305 (533)
Q Consensus 243 ~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~~a--f~iL~ryr~~----~~~Fn----------DDiQGTaaV~LA 305 (533)
.+..|...+.-.||+.+.+.. |..-|-=.|++..-. --+.+.|+.- ..++. +--..||-=+..
T Consensus 134 ~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~ 213 (445)
T PRK14030 134 KSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALY 213 (445)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHH
Confidence 556688899999999998644 777777788875331 2356777652 22221 112238887888
Q ss_pred HHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhc--
Q 009519 306 GLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP-- 383 (533)
Q Consensus 306 gli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~-- 383 (533)
++-.+++..|.+|+. .||+|-|.|..|...|+.|.++ |. +=+-+-|++|-|++.. .|+..+..
T Consensus 214 ~~~~~~~~~g~~l~g---~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~-Gld~~~l~~l 278 (445)
T PRK14030 214 FVHQMLETKGIDIKG---KTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD-GISGEKIDYM 278 (445)
T ss_pred HHHHHHHHcCCCcCC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC-CCCHHHHHHH
Confidence 888899998988888 9999999999999999999765 43 4577789999998864 35443311
Q ss_pred --cccccC--------CcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccC
Q 009519 384 --FAKDPG--------DFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAEC 452 (533)
Q Consensus 384 --~A~~~~--------~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~ 452 (533)
+-.... ...+ ....+-.+ +-.++.||||=+.. .+.+|++.++.+.+ +.-.||.=-+| |+. -
T Consensus 279 ~~~k~~~~~~~~~~~~~~~g-a~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~--~~ak~V~EgAN~p~t---~ 350 (445)
T PRK14030 279 LELRASGNDIVAPYAEKFPG-STFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIK--NGVLCVAEVSNMGCT---A 350 (445)
T ss_pred HHHHHhcCccHHHHHhcCCC-CEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHH--cCCeEEEeCCCCCCC---H
Confidence 000000 0000 00011122 22367999997765 79999999999942 56779999999 543 1
Q ss_pred CHHHHhc
Q 009519 453 TAADAFK 459 (533)
Q Consensus 453 tpe~A~~ 459 (533)
.+++.++
T Consensus 351 eA~~iL~ 357 (445)
T PRK14030 351 EAIDKFI 357 (445)
T ss_pred HHHHHHH
Confidence 2445554
No 37
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=95.73 E-value=0.058 Score=53.86 Aligned_cols=130 Identities=19% Similarity=0.312 Sum_probs=87.6
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 297 QGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
.-||-=+..++-.+++..+.+++. .||+|.|.|..|.++|++|.+. |. +=+.+.|++|-+++.. .
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~---~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~-G 72 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAG---ARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPD-G 72 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccC---CEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC-C
Confidence 346666777788888888877777 9999999999999999998764 43 3355999999998865 3
Q ss_pred CChhhh-ccccccCCcCCcc--CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCC
Q 009519 377 LDPAAA-PFAKDPGDFMGLR--EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTM 448 (533)
Q Consensus 377 l~~~k~-~~A~~~~~~~~~~--~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~ 448 (533)
|+.... .+.+........+ ...+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |..
T Consensus 73 ld~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l-----~a~~I~egAN~~~t 141 (227)
T cd01076 73 LDVPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI-----KAKIIVEAANGPTT 141 (227)
T ss_pred CCHHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc-----eeeEEEeCCCCCCC
Confidence 432221 1111110000000 0112233 3345889999877 5899999999998 3789999999 553
No 38
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=95.70 E-value=0.085 Score=51.44 Aligned_cols=122 Identities=20% Similarity=0.276 Sum_probs=80.0
Q ss_pred hHHHHHHHHHHHHHHh--CCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 299 TAGVALAGLLGTVRAQ--GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 299 TaaV~LAgli~Alr~~--g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
||-=+..++-.+++.. +.+++. .+|+|.|.|..|..+|+.|.+. |. +++++|++. +.
T Consensus 5 Tg~Gv~~~~~~~~~~~~~~~~l~g---k~v~I~G~G~vG~~~A~~L~~~-----G~-------~Vvv~D~~~------~~ 63 (200)
T cd01075 5 TAYGVFLGMKAAAEHLLGTDSLEG---KTVAVQGLGKVGYKLAEHLLEE-----GA-------KLIVADINE------EA 63 (200)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCC---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH------HH
Confidence 5555566667777775 777777 9999999999999999988764 42 688888641 11
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCHH
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAA 455 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpe 455 (533)
+..++..|. .. ..+..+... .+.|+++=++. .+.+|++.++.| .-++|..-+| |+. +..++
T Consensus 64 ~~~~~~~~g---~~------~v~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l-----~~~~v~~~AN~~~~--~~~~~ 125 (200)
T cd01075 64 VARAAELFG---AT------VVAPEEIYS-VDADVFAPCAL-GGVINDDTIPQL-----KAKAIAGAANNQLA--DPRHG 125 (200)
T ss_pred HHHHHHHcC---CE------EEcchhhcc-ccCCEEEeccc-ccccCHHHHHHc-----CCCEEEECCcCccC--CHhHH
Confidence 222222221 00 111233333 36899996554 799999999999 3568998888 665 33445
Q ss_pred HHhc
Q 009519 456 DAFK 459 (533)
Q Consensus 456 ~A~~ 459 (533)
+.++
T Consensus 126 ~~L~ 129 (200)
T cd01075 126 QMLH 129 (200)
T ss_pred HHHH
Confidence 5554
No 39
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.55 E-value=0.034 Score=57.72 Aligned_cols=97 Identities=18% Similarity=0.332 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
+=.-+|-+|++.-++..+.+|+. .+++|+|+|. .|..+|.+|... | ..+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~G---k~vvVIGrs~~VG~pla~lL~~~-----g-------atVtv~~s~t-------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEG---KNAVVIGRSHIVGQPVSKLLLQK-----N-------ASVTILHSRS-------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCC---CEEEEECCCchhHHHHHHHHHHC-----C-------CeEEEEeCCc--------
Confidence 34566888999999999999988 9999999988 999999999753 3 2688887631
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
.+|.+.+++ +|++|...+.++.|++++++ +.-+|+=++.|-
T Consensus 193 ---------------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk-------~gavVIDvGi~~ 233 (286)
T PRK14175 193 ---------------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK-------EGAVIIDVGNTP 233 (286)
T ss_pred ---------------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC-------CCcEEEEcCCCc
Confidence 137888888 99999999999999998764 456777776643
No 40
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.49 E-value=0.036 Score=60.24 Aligned_cols=181 Identities=23% Similarity=0.321 Sum_probs=108.6
Q ss_pred hhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHH
Q 009519 201 LDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFE 280 (533)
Q Consensus 201 l~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~ 280 (533)
-+||..++|+| . +=+| .+-=+| +.=+.|-.+.+..+-+..+ ++--..||.
T Consensus 94 ~HLfrVAsGLD---S----mVlG--------E~QILG------------QVK~Ay~~a~~~g~~g~~L---~~lFqkAi~ 143 (414)
T COG0373 94 RHLFRVASGLD---S----LVLG--------ETQILG------------QVKDAYAKAQENGTLGKVL---NRLFQKAIS 143 (414)
T ss_pred HHHHHHhccch---h----hhcC--------cHHHHH------------HHHHHHHHHHHcCCchHHH---HHHHHHHHH
Confidence 47899999999 3 3345 111111 2334445555444422222 333467888
Q ss_pred HHHHHhcc--CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhc
Q 009519 281 TLERYRKR--FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR 358 (533)
Q Consensus 281 iL~ryr~~--~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~ 358 (533)
.=.|.|.+ |. .|--+|.-|++--|-++.|. |++ .+++|+|||..|-.+|+.|... |.
T Consensus 144 ~gKrvRseT~I~------~~~VSi~saAv~lA~~~~~~-L~~---~~vlvIGAGem~~lva~~L~~~-----g~------ 202 (414)
T COG0373 144 VGKRVRSETGIG------KGAVSISSAAVELAKRIFGS-LKD---KKVLVIGAGEMGELVAKHLAEK-----GV------ 202 (414)
T ss_pred HHHHhhcccCCC------CCccchHHHHHHHHHHHhcc-ccc---CeEEEEcccHHHHHHHHHHHhC-----CC------
Confidence 88888876 31 23333444445555555443 555 9999999999999999988875 43
Q ss_pred CeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccC-CCCCCHHHHHHhhhcCCCC
Q 009519 359 NKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVK 437 (533)
Q Consensus 359 ~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~-~g~Fteevv~~Ma~~~~er 437 (533)
++|+++++ |..| -+.+|+.-.- . -.....|.+.+.. .||+|-.++. .-+++.+.++.-.+ ..+
T Consensus 203 ~~i~IaNR----T~er------A~~La~~~~~-~-~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~--~r~ 266 (414)
T COG0373 203 KKITIANR----TLER------AEELAKKLGA-E-AVALEELLEALAE--ADVVISSTSAPHPIITREMVERALK--IRK 266 (414)
T ss_pred CEEEEEcC----CHHH------HHHHHHHhCC-e-eecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHh--ccc
Confidence 58998876 2222 1233332110 0 0112457777777 8998865443 46899988876532 333
Q ss_pred C-eEEecCCCCC
Q 009519 438 P-AIFAMSNPTM 448 (533)
Q Consensus 438 P-IIFaLSNPt~ 448 (533)
. +||=|+||-.
T Consensus 267 ~~livDiavPRd 278 (414)
T COG0373 267 RLLIVDIAVPRD 278 (414)
T ss_pred CeEEEEecCCCC
Confidence 4 9999999986
No 41
>PLN00203 glutamyl-tRNA reductase
Probab=95.26 E-value=0.057 Score=60.20 Aligned_cols=144 Identities=19% Similarity=0.245 Sum_probs=84.8
Q ss_pred chHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCC-CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCCh
Q 009519 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGL-SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNND 354 (533)
Q Consensus 276 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~-~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~ 354 (533)
..||..=.|-|.+--. =.|--+|.-+++=-|.+..|. +|.+ .+|+|+|||..|..+++.|.. .|.
T Consensus 225 ~~Ai~~~KrVRteT~I----~~~~vSv~s~Av~la~~~~~~~~l~~---kkVlVIGAG~mG~~~a~~L~~-----~G~-- 290 (519)
T PLN00203 225 KHAITAGKRVRTETNI----ASGAVSVSSAAVELALMKLPESSHAS---ARVLVIGAGKMGKLLVKHLVS-----KGC-- 290 (519)
T ss_pred HHHHHHHHHHhhccCC----CCCCcCHHHHHHHHHHHhcCCCCCCC---CEEEEEeCHHHHHHHHHHHHh-----CCC--
Confidence 3455555555554211 123334444555555556553 4667 999999999999999887764 343
Q ss_pred hhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCC-CCCCHHHHHHhhhc
Q 009519 355 AFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRES 433 (533)
Q Consensus 355 ~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Fteevv~~Ma~~ 433 (533)
++|+++++. .++ .......|-...-.+ ....++.+++.. +|++|.+++.+ .+|++++++.|-+.
T Consensus 291 ----~~V~V~nRs----~er--a~~La~~~~g~~i~~---~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~ 355 (519)
T PLN00203 291 ----TKMVVVNRS----EER--VAALREEFPDVEIIY---KPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPA 355 (519)
T ss_pred ----CeEEEEeCC----HHH--HHHHHHHhCCCceEe---ecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhc
Confidence 579998874 111 111222221000000 112457888877 89999876543 58999999998320
Q ss_pred --CCCCC-eEEecCCCCC
Q 009519 434 --DSVKP-AIFAMSNPTM 448 (533)
Q Consensus 434 --~~erP-IIFaLSNPt~ 448 (533)
...+| +|+=||.|-.
T Consensus 356 ~~~~~~~~~~IDLAvPRd 373 (519)
T PLN00203 356 SDTVGGKRLFVDISVPRN 373 (519)
T ss_pred ccccCCCeEEEEeCCCCC
Confidence 11244 5667999974
No 42
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=95.20 E-value=0.027 Score=61.13 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=77.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCC-CCChhhhccccc-cCCcCCccCCCCHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKD-PGDFMGLREGASLL 401 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~-~l~~~k~~~A~~-~~~~~~~~~~~~L~ 401 (533)
.||+|+||||+ =.-+++-..+.+.+.++. ..|||+|-+ .+|- .+...-+.+++. ..++. .....++.
T Consensus 1 ~KI~iIGgGS~--~tp~li~~l~~~~~~l~~----~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~-v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS--FTPELVSGLLKTPEELPI----SEVTLYDID----EERLDIILTIAKRYVEEVGADIK-FEKTMDLE 69 (425)
T ss_pred CEEEEECCchH--hHHHHHHHHHcChhhCCC----CEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeE-EEEeCCHH
Confidence 38999999996 334444444432224442 689999964 3331 122212222222 11111 11346899
Q ss_pred HHhcccCCcEEEEe--------------------------ccCCCCCC--------HHHHHHhhhcCCCCCeEEecCCCC
Q 009519 402 EVVRKVKPHVLLGL--------------------------SGVGGVFN--------EEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 402 e~V~~vkptvLIG~--------------------------S~~~g~Ft--------eevv~~Ma~~~~erPIIFaLSNPt 447 (533)
||+++ +|.+|-. -|.+|.|. .++++.|. ++++..+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~-~~~P~a~lin~TNP~ 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXE-KLSPDAWYLNFTNPA 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHH-HhCCCcEEEecCChH
Confidence 99999 8888721 12234333 38888885 499999999999999
Q ss_pred CcccCCHHHHhcccCCcEEEecC
Q 009519 448 MNAECTAADAFKHAGENIVFASG 470 (533)
Q Consensus 448 ~~aE~tpe~A~~wt~Grai~AtG 470 (533)
. +.-+-+++++....+|++|
T Consensus 147 d---i~t~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 G---EVTEAVRRYVPPEKAVGLC 166 (425)
T ss_pred H---HHHHHHHHhCCCCcEEEEC
Confidence 6 5555666677445567666
No 43
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.10 E-value=0.032 Score=60.46 Aligned_cols=134 Identities=16% Similarity=0.266 Sum_probs=76.9
Q ss_pred chHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChh
Q 009519 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (533)
Q Consensus 276 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~ 355 (533)
..||+.=.|-|.+.-. + .|.-+|+-+|+= ...+.+.+|.+.|++|+|||.+|-.+|..|.. .|.
T Consensus 142 ~~A~~~aKrVrteT~I-~---~~~vSv~~~Av~----la~~~~~~l~~kkvlviGaG~~a~~va~~L~~-----~g~--- 205 (414)
T PRK13940 142 QKVFATAKRVRSETRI-G---HCPVSVAFSAIT----LAKRQLDNISSKNVLIIGAGQTGELLFRHVTA-----LAP--- 205 (414)
T ss_pred HHHHHHHHHHHhccCC-C---CCCcCHHHHHHH----HHHHHhcCccCCEEEEEcCcHHHHHHHHHHHH-----cCC---
Confidence 4566666677765311 0 112223333333 33333333444999999999999888888764 344
Q ss_pred hhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCC-CCCCHHHHHHhhhcC
Q 009519 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG-GVFNEEVLKAMRESD 434 (533)
Q Consensus 356 eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~-g~Fteevv~~Ma~~~ 434 (533)
++|+++++. .++ -..++..-.... .....+|.+++.. .|++|-+++.+ -++|++.++
T Consensus 206 ---~~I~V~nRt----~~r------a~~La~~~~~~~-~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------ 263 (414)
T PRK13940 206 ---KQIMLANRT----IEK------AQKITSAFRNAS-AHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------ 263 (414)
T ss_pred ---CEEEEECCC----HHH------HHHHHHHhcCCe-EecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------
Confidence 579988773 222 122222110000 0112457788877 99999888765 457865532
Q ss_pred CCCCe-EEecCCCCC
Q 009519 435 SVKPA-IFAMSNPTM 448 (533)
Q Consensus 435 ~erPI-IFaLSNPt~ 448 (533)
.+|+ |+=||.|-.
T Consensus 264 -~~~~~~iDLavPRd 277 (414)
T PRK13940 264 -DKPRVFIDISIPQA 277 (414)
T ss_pred -CCCeEEEEeCCCCC
Confidence 4565 467999975
No 44
>PLN00106 malate dehydrogenase
Probab=94.97 E-value=0.16 Score=53.49 Aligned_cols=143 Identities=19% Similarity=0.205 Sum_probs=88.9
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhh
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAA 382 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~ 382 (533)
|.-+.|+|..|..-. .||+|+|| |..|..+|..|.. .|+- ..+.|+|.+- ..+. -+|.+...
T Consensus 4 ~~~~~~~~~~~~~~~----~KV~IiGaaG~VG~~~a~~l~~-----~~~~-----~el~L~Di~~--~~g~a~Dl~~~~~ 67 (323)
T PLN00106 4 ASSLRACRAKGGAPG----FKVAVLGAAGGIGQPLSLLMKM-----NPLV-----SELHLYDIAN--TPGVAADVSHINT 67 (323)
T ss_pred hhhhhccccccCCCC----CEEEEECCCCHHHHHHHHHHHh-----CCCC-----CEEEEEecCC--CCeeEchhhhCCc
Confidence 345678888887655 49999999 9999999998764 2332 4799999865 1111 13332211
Q ss_pred ccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 383 PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 383 ~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+.+-. +.....++.+++++ .|++|=+.+.+ |. ..+++++.+.+ ++.+.||+.-|||..
T Consensus 68 -~~~i~----~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~-~~p~aivivvSNPvD 139 (323)
T PLN00106 68 -PAQVR----GFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAK-HCPNALVNIISNPVN 139 (323)
T ss_pred -CceEE----EEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEeCCCcc
Confidence 11110 00023468899998 89988665543 21 34567777754 889999999999995
Q ss_pred -cccCCHHHHhcccC--CcEEEecCC
Q 009519 449 -NAECTAADAFKHAG--ENIVFASGS 471 (533)
Q Consensus 449 -~aE~tpe~A~~wt~--Grai~AtGS 471 (533)
.+.+....+.+++. =.-+|.+|.
T Consensus 140 ~~~~i~t~~~~~~s~~p~~~viG~~~ 165 (323)
T PLN00106 140 STVPIAAEVLKKAGVYDPKKLFGVTT 165 (323)
T ss_pred ccHHHHHHHHHHcCCCCcceEEEEec
Confidence 22244444545442 135666663
No 45
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=94.89 E-value=0.055 Score=57.38 Aligned_cols=126 Identities=13% Similarity=0.096 Sum_probs=72.7
Q ss_pred chHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChh
Q 009519 276 KWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDA 355 (533)
Q Consensus 276 ~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~ 355 (533)
..||..=.|-|.+.-. |.++|.++.+ |.+...+ +.+|.+.|++|+|||..|--+|+.|.+. |.
T Consensus 136 ~~A~~~aKrVRteT~I------~~~~vSv~s~--av~~~~~-~~~l~~k~vLvIGaGem~~l~a~~L~~~-----g~--- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGGA------PYAEVTIESV--VQQELRR-RQKSKKASLLFIGYSEINRKVAYYLQRQ-----GY--- 198 (338)
T ss_pred HHHHHHHHHHhhhcCC------CCCCcCHHHH--HHHHHHH-hCCccCCEEEEEcccHHHHHHHHHHHHc-----CC---
Confidence 5666666777765211 4445555443 2222221 2334449999999999988887777653 44
Q ss_pred hhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEec----cCCCCCCHHHHHHhh
Q 009519 356 FARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMR 431 (533)
Q Consensus 356 eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma 431 (533)
++|+++.+.-. ..+|.... ....+.. .+.||+|-.| +..-.++.+.++..
T Consensus 199 ---~~i~v~nRt~~-----------~~~~~~~~---------~~~~~~~--~~~DvVIs~t~~Tas~~p~i~~~~~~~~- 252 (338)
T PRK00676 199 ---SRITFCSRQQL-----------TLPYRTVV---------REELSFQ--DPYDVIFFGSSESAYAFPHLSWESLADI- 252 (338)
T ss_pred ---CEEEEEcCCcc-----------ccchhhhh---------hhhhhcc--cCCCEEEEcCCcCCCCCceeeHHHHhhc-
Confidence 57999888531 12222110 0001112 3589999642 23345777766543
Q ss_pred hcCCCCCeEEecCCCCC
Q 009519 432 ESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 432 ~~~~erPIIFaLSNPt~ 448 (533)
.+| ++|=||+|-.
T Consensus 253 ---~~r-~~iDLAvPRd 265 (338)
T PRK00676 253 ---PDR-IVFDFNVPRT 265 (338)
T ss_pred ---cCc-EEEEecCCCC
Confidence 124 9999999987
No 46
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=94.76 E-value=0.094 Score=55.83 Aligned_cols=231 Identities=15% Similarity=0.224 Sum_probs=120.9
Q ss_pred ChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCC--CcccccchhhhhHhhhcCCCCCceecEEeeccCC----chhc
Q 009519 156 DKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGV--QGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTN----NQKL 229 (533)
Q Consensus 156 d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~--~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTn----N~~L 229 (533)
-|+++.++.+ .+.+|+|=++-+.-.|+-|--- .|-.|......+|. +. |.+-|..= =+.+
T Consensus 19 ~P~~v~~l~~----~g~~v~vE~gaG~~~~~~D~~Y~~aGa~i~~~~~~~~~--~d--------ii~~Vk~p~~~~~~~~ 84 (370)
T TIGR00518 19 TPAGVAELTS----RGHEVLVEAGAGEGSGFTDAAYKAAGAELVATAKQVWD--AE--------LVLKVKEPLPEEYGYL 84 (370)
T ss_pred CHHHHHHHHh----CCCEEEEECCCCcCCCCChHHHHHCCCEEecCHHHHhc--CC--------EEEEeCCCCHHHHhhc
Confidence 3556666665 4688999888777777777654 46566544555552 22 23323110 0123
Q ss_pred ccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhccCcee--ccCcchhHHHHHHHH
Q 009519 230 LEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMF--NDDIQGTAGVALAGL 307 (533)
Q Consensus 230 l~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~~~~F--nDDiQGTaaV~LAgl 307 (533)
..+..++++=|+=-. . +.+++..+.-. ..|-+|-+.. -+.++++| +-.+-|--+|.+|+-
T Consensus 85 ~~g~~l~~~~~~a~~----~----~~~~~l~~~~~-t~i~~e~i~~---------~~~~~~~l~~~~~iaG~~av~~aa~ 146 (370)
T TIGR00518 85 RHGQILFTYLHLAAE----R----ALTDALLDSGT-TAIAYETVQT---------ADGALPLLAPMSEVAGRLAAQVGAY 146 (370)
T ss_pred CCCcEEEEEeccCCC----H----HHHHHHHHcCC-eEEEeeeeec---------cCCCCccccchhHHHHHHHHHHHHH
Confidence 344555555555210 0 22222221111 2455554431 11123333 223455555555543
Q ss_pred HHHHHHhC------CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhh
Q 009519 308 LGTVRAQG------LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA 381 (533)
Q Consensus 308 i~Alr~~g------~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k 381 (533)
..- |..+ .....+...+++|+|+|.+|.++++.+... |. ++.++|++ ..+ +....
T Consensus 147 ~~~-~~~~g~~~~~~~~~~l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~----~~~--~~~l~ 207 (370)
T TIGR00518 147 HLE-KTQGGRGVLLGGVPGVEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDIN----IDR--LRQLD 207 (370)
T ss_pred HhH-hhcCCcceeecCCCCCCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECC----HHH--HHHHH
Confidence 322 2222 111113348999999999999999988764 32 58888873 111 11111
Q ss_pred hccccccCCcCCccCCCCHHHHhcccCCcEEEEeccC-----CCCCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 382 APFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV-----GGVFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 382 ~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~-----~g~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
..|...... ...+...|.++++. .|++|.+... +.++|++.++.|. ++.+|+-+|-
T Consensus 208 ~~~g~~v~~--~~~~~~~l~~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk----~g~vIvDva~ 268 (370)
T TIGR00518 208 AEFGGRIHT--RYSNAYEIEDAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK----PGAVIVDVAI 268 (370)
T ss_pred HhcCceeEe--ccCCHHHHHHHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC----CCCEEEEEec
Confidence 122211000 00112358888876 8999987532 4568999999993 5688888773
No 47
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.45 E-value=0.055 Score=58.73 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=77.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccc-cCCcCCccCCCCHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKD-PGDFMGLREGASLL 401 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~-~~~~~~~~~~~~L~ 401 (533)
.||+|+||||+ -.-.++-..+.+...++ -..|||+|-+- ..| .-+...-+.+++. ..++. .....++.
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l~----~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~-v~~t~d~~ 70 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEELP----VTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIK-VHLTTDRR 70 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccCC----CCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeE-EEEeCCHH
Confidence 38999999996 44444444333223343 26899999852 122 1111111122221 11111 01246799
Q ss_pred HHhcccCCcEEEEeccCCCC----------------------------------CCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 402 EVVRKVKPHVLLGLSGVGGV----------------------------------FNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~----------------------------------Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
||+++ +|.+|=.-.++|. .=.++++.|. ++|+..+|+-.|||.
T Consensus 71 ~al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~-~~~Pda~lin~TNP~ 147 (419)
T cd05296 71 EALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVE-ELAPDAWLINFTNPA 147 (419)
T ss_pred HHhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHH-HHCCCeEEEEecCHH
Confidence 99999 7887744333331 1237778885 489999999999999
Q ss_pred CcccCCHHHHhcccCCcEEEecC
Q 009519 448 MNAECTAADAFKHAGENIVFASG 470 (533)
Q Consensus 448 ~~aE~tpe~A~~wt~Grai~AtG 470 (533)
. +..+-+++++ ..-+|++|
T Consensus 148 ~---ivt~a~~k~~-~~rviGlc 166 (419)
T cd05296 148 G---IVTEAVLRHT-GDRVIGLC 166 (419)
T ss_pred H---HHHHHHHHhc-cCCEEeeC
Confidence 6 6666677777 44567766
No 48
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=94.34 E-value=0.057 Score=52.83 Aligned_cols=110 Identities=20% Similarity=0.237 Sum_probs=65.6
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccC
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~ 396 (533)
+|++ .||+|+|+|..|..||..|..+++ +++.++|.+=+ . ..+|+.+ ..+..+- +...
T Consensus 18 ~L~~---~~V~IvG~GglGs~ia~~La~~Gv-----------g~i~lvD~D~v-e--~sNL~Rq-~~~~~~i----G~~K 75 (200)
T TIGR02354 18 KLEQ---ATVAICGLGGLGSNVAINLARAGI-----------GKLILVDFDVV-E--PSNLNRQ-QYKASQV----GEPK 75 (200)
T ss_pred HHhC---CcEEEECcCHHHHHHHHHHHHcCC-----------CEEEEECCCEE-c--ccccccc-cCChhhC----CCHH
Confidence 3455 999999999999999999987644 68999998733 1 2345542 1111111 1111
Q ss_pred CCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEE-ecCCCCCcccCC
Q 009519 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF-AMSNPTMNAECT 453 (533)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIF-aLSNPt~~aE~t 453 (533)
...+.+.++...|++-|- +...-++++-+...- .+--+|+ +.-||..+.+..
T Consensus 76 a~~~~~~l~~inp~~~i~--~~~~~i~~~~~~~~~---~~~DlVi~a~Dn~~~k~~l~ 128 (200)
T TIGR02354 76 TEALKENISEINPYTEIE--AYDEKITEENIDKFF---KDADIVCEAFDNAEAKAMLV 128 (200)
T ss_pred HHHHHHHHHHHCCCCEEE--EeeeeCCHhHHHHHh---cCCCEEEECCCCHHHHHHHH
Confidence 234667777778876443 233556776666542 2333444 556766654433
No 49
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.19 E-value=0.32 Score=50.64 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-+|++..++..+.+++. .+++|+|-|- .|.-+|.+|... | ..+.+|+++
T Consensus 139 ~PcTp~av~~ll~~~~i~l~G---k~vvViGrs~iVG~Pla~lL~~~-----~-------atVtv~hs~----------- 192 (285)
T PRK10792 139 RPCTPRGIMTLLERYGIDTYG---LNAVVVGASNIVGRPMSLELLLA-----G-------CTVTVCHRF----------- 192 (285)
T ss_pred CCCCHHHHHHHHHHcCCCCCC---CEEEEECCCcccHHHHHHHHHHC-----C-------CeEEEEECC-----------
Confidence 456788899999999999988 9999999988 999999998652 3 257788763
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC-CCCC----cccCC
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS-NPTM----NAECT 453 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS-NPt~----~aE~t 453 (533)
+ .+|.+.+++ +|++|-.-+.|+.|+.++|+ +.-+|.=.. |+.. ---+.
T Consensus 193 ---------T---------~~l~~~~~~--ADIvi~avG~p~~v~~~~vk-------~gavVIDvGin~~~~gk~~GDvd 245 (285)
T PRK10792 193 ---------T---------KNLRHHVRN--ADLLVVAVGKPGFIPGEWIK-------PGAIVIDVGINRLEDGKLVGDVE 245 (285)
T ss_pred ---------C---------CCHHHHHhh--CCEEEEcCCCcccccHHHcC-------CCcEEEEcccccccCCCcCCCcC
Confidence 1 248888988 99999999999999998887 456776555 4321 12355
Q ss_pred HHHHhc
Q 009519 454 AADAFK 459 (533)
Q Consensus 454 pe~A~~ 459 (533)
+|.+.+
T Consensus 246 ~~~~~~ 251 (285)
T PRK10792 246 FETAAE 251 (285)
T ss_pred HHHHHh
Confidence 566655
No 50
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.91 E-value=0.35 Score=49.67 Aligned_cols=37 Identities=5% Similarity=-0.216 Sum_probs=29.7
Q ss_pred eecccccceeechhhhHHHHHhCCcccCHHHHHHHHH
Q 009519 484 GHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520 (533)
Q Consensus 484 ~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 520 (533)
..|++..|-+.++.+.=++.++..--++.+-+..+.+
T Consensus 184 ~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~ 220 (308)
T PRK06129 184 EIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIR 220 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4578888888999999998888888888777776654
No 51
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.77 E-value=0.17 Score=52.58 Aligned_cols=91 Identities=11% Similarity=0.193 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh
Q 009519 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (533)
Q Consensus 301 aV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~ 379 (533)
-+|-+|++.=++..+.+++. ++++|+|.| ..|.-+|.+|... |. .+.+|+++
T Consensus 138 PcTp~avi~lL~~~~i~l~G---k~vvVvGrs~~VG~Pla~lL~~~-----gA-------tVtv~hs~------------ 190 (285)
T PRK14191 138 PATPMGVMRLLKHYHIEIKG---KDVVIIGASNIVGKPLAMLMLNA-----GA-------SVSVCHIL------------ 190 (285)
T ss_pred CCcHHHHHHHHHHhCCCCCC---CEEEEECCCchhHHHHHHHHHHC-----CC-------EEEEEeCC------------
Confidence 46778888888889998888 999999999 9999999999753 32 46666431
Q ss_pred hhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 380 ~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
..+|.+.+++ +|++|...+.++.+++++|+ +.-+|.=..
T Consensus 191 -----------------t~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk-------~GavVIDvG 229 (285)
T PRK14191 191 -----------------TKDLSFYTQN--ADIVCVGVGKPDLIKASMVK-------KGAVVVDIG 229 (285)
T ss_pred -----------------cHHHHHHHHh--CCEEEEecCCCCcCCHHHcC-------CCcEEEEee
Confidence 1237788888 99999999999999999986 445665443
No 52
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.72 E-value=0.21 Score=52.03 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=78.6
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 401 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~ 401 (533)
..||.|+|||+.|.++|.+++. .|+. .+.|+|.+-=...+. -++... ..+....... ....+++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~-----~~~~------~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i---~~~~d~~ 69 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQ-----KNLG------DVVLYDVIKGVPQGKALDLKHF-STLVGSNINI---LGTNNYE 69 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHH-----CCCC------eEEEEECCCccchhHHHHHhhh-ccccCCCeEE---EeCCCHH
Confidence 4799999999999999887664 3542 599999742111111 012211 1111110000 1124566
Q ss_pred HHhcccCCcEEEEeccCCC--------------CCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--CcE
Q 009519 402 EVVRKVKPHVLLGLSGVGG--------------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENI 465 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g--------------~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--Gra 465 (533)
++++ +|++|=+.+.+. -+-+++.+.|.+ +++.-+++-.|||.. .....+.+++. =.-
T Consensus 70 -~l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~-~~p~a~vivvsNP~d---i~t~~~~~~s~~p~~r 142 (319)
T PTZ00117 70 -DIKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKK-YCPNAFVICVTNPLD---CMVKVFQEKSGIPSNK 142 (319)
T ss_pred -HhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecChHH---HHHHHHHHhhCCCccc
Confidence 6777 898885554332 234588888864 889997777899996 55666666652 145
Q ss_pred EEecCCCCc
Q 009519 466 VFASGSPFE 474 (533)
Q Consensus 466 i~AtGSPf~ 474 (533)
+|++|+-.+
T Consensus 143 viG~gt~ld 151 (319)
T PTZ00117 143 ICGMAGVLD 151 (319)
T ss_pred EEEecchHH
Confidence 888885443
No 53
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.59 E-value=0.11 Score=53.43 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=55.0
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhc
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAP 383 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~ 383 (533)
.|++.+++..+..++. ++++|+|||.||.+++..|... |. ++|+++|+. ..+ +.+.+ .
T Consensus 112 ~G~~~~l~~~~~~~~~---k~vlIlGaGGaaraia~aL~~~-----G~------~~I~I~nR~----~~ka~~la~---~ 170 (284)
T PRK12549 112 SGFAESFRRGLPDASL---ERVVQLGAGGAGAAVAHALLTL-----GV------ERLTIFDVD----PARAAALAD---E 170 (284)
T ss_pred HHHHHHHHhhccCccC---CEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEECCC----HHHHHHHHH---H
Confidence 3577888765555666 8999999999999999888764 44 579999984 222 11211 1
Q ss_pred cccccCCcCCccCCCCHHHHhcccCCcEEEEeccC
Q 009519 384 FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV 418 (533)
Q Consensus 384 ~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~ 418 (533)
+.+...... .....++.+.++. +|++|.++..
T Consensus 171 l~~~~~~~~-~~~~~~~~~~~~~--aDiVInaTp~ 202 (284)
T PRK12549 171 LNARFPAAR-ATAGSDLAAALAA--ADGLVHATPT 202 (284)
T ss_pred HHhhCCCeE-EEeccchHhhhCC--CCEEEECCcC
Confidence 111000000 0012345666665 8999988754
No 54
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.54 E-value=0.18 Score=48.11 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l 377 (533)
||+.+++.+..+++..|.++++ .+++++|+ |..|..++..+... | .++++++++. ++ +
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~---~~vlVlGgtG~iG~~~a~~l~~~-----g-------~~V~l~~R~~----~~--~ 65 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKG---KTAVVLGGTGPVGQRAAVLLARE-----G-------ARVVLVGRDL----ER--A 65 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCC---CEEEEECCCCHHHHHHHHHHHHC-----C-------CEEEEEcCCH----HH--H
Confidence 6777788888888878888888 99999997 99998888877652 3 3788887641 11 1
Q ss_pred Chhhhccccc-cCCc--CCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 378 DPAAAPFAKD-PGDF--MGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 378 ~~~k~~~A~~-~~~~--~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
......+... .... ....+..++.+++++ .|++|-.+. .|..+......- ..+..+++=++.|-+
T Consensus 66 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~diVi~at~-~g~~~~~~~~~~---~~~~~vv~D~~~~~~ 133 (194)
T cd01078 66 QKAADSLRARFGEGVGAVETSDDAARAAAIKG--ADVVFAAGA-AGVELLEKLAWA---PKPLAVAADVNAVPP 133 (194)
T ss_pred HHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc--CCEEEECCC-CCceechhhhcc---cCceeEEEEccCCCC
Confidence 1111111100 0000 000112346677876 899998665 455433222211 111236777777665
No 55
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.44 E-value=0.63 Score=43.48 Aligned_cols=81 Identities=19% Similarity=0.197 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChh
Q 009519 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA 380 (533)
Q Consensus 302 V~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~ 380 (533)
.|..|++.-++..|.+++. ++|+++|.+. .|.-+|.+|. ++|. .+..+|++.
T Consensus 10 ~t~~a~~~ll~~~~~~~~g---k~v~VvGrs~~vG~pla~lL~-----~~ga-------tV~~~~~~t------------ 62 (140)
T cd05212 10 PVAKAVKELLNKEGVRLDG---KKVLVVGRSGIVGAPLQCLLQ-----RDGA-------TVYSCDWKT------------ 62 (140)
T ss_pred cHHHHHHHHHHHcCCCCCC---CEEEEECCCchHHHHHHHHHH-----HCCC-------EEEEeCCCC------------
Confidence 4678889999999999988 9999999864 4444554443 3443 567776531
Q ss_pred hhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 381 AAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 381 k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
.+|.|++++ +|++|-..+.++.|+.|+||
T Consensus 63 -----------------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik 91 (140)
T cd05212 63 -----------------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK 91 (140)
T ss_pred -----------------cCHHHHHhh--CCEEEEecCCCCccCHHHcC
Confidence 247888988 99999999999999999988
No 56
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=93.33 E-value=0.21 Score=52.19 Aligned_cols=129 Identities=16% Similarity=0.219 Sum_probs=76.5
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 401 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~ 401 (533)
..||.|+|||..|.++|.+++. .|+. .+.|+|.+-=...+. -++... ..+....... ....++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl~------~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I---~~~~d~- 69 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNLG------DVVLFDIVKNIPQGKALDISHS-NVIAGSNSKV---IGTNNY- 69 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCCC------eEEEEeCCCchhhHHHHHHHhh-hhccCCCeEE---EECCCH-
Confidence 3699999999999999987653 4652 499999743221111 112111 1111111011 112456
Q ss_pred HHhcccCCcEEEEeccCCC---C----------------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC
Q 009519 402 EVVRKVKPHVLLGLSGVGG---V----------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG 462 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g---~----------------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~ 462 (533)
+++++ +|++|=+.+.++ - +-.++++.|.+ +++.-+++--|||.. .....+.+.+.
T Consensus 70 ~~l~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~-~~p~a~~iv~sNP~d---i~t~~~~~~sg 143 (321)
T PTZ00082 70 EDIAG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKK-YCPNAFVIVITNPLD---VMVKLLQEHSG 143 (321)
T ss_pred HHhCC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHhcC
Confidence 56777 899885444332 2 12467777754 777778999999996 45555666552
Q ss_pred --CcEEEecCCCC
Q 009519 463 --ENIVFASGSPF 473 (533)
Q Consensus 463 --Grai~AtGSPf 473 (533)
-.-+|++|.-.
T Consensus 144 ~p~~rviGlgt~l 156 (321)
T PTZ00082 144 LPKNKVCGMAGVL 156 (321)
T ss_pred CChhhEEEecCcc
Confidence 24688888444
No 57
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.22 E-value=0.27 Score=54.82 Aligned_cols=108 Identities=24% Similarity=0.358 Sum_probs=60.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-C---CCC------------hhhhccccc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-K---NLD------------PAAAPFAKD 387 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~---~l~------------~~k~~~A~~ 387 (533)
.|++|+|||.+|++.+...... | | +++.+|.+- .| + .+- .....|++.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~l-----G-----A--~V~a~D~~~----~rle~aeslGA~~v~i~~~e~~~~~~gya~~ 229 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSL-----G-----A--IVRAFDTRP----EVAEQVESMGAEFLELDFEEEGGSGDGYAKV 229 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----C-----C--EEEEEeCCH----HHHHHHHHcCCeEEEeccccccccccchhhh
Confidence 7999999999999987776554 3 1 477777631 11 0 000 001112221
Q ss_pred cCC-cCCccCCCCHHHHhcccCCcEEEEeccCCC-----CCCHHHHHHhhhcCCCCCeEEecCCCC-CcccCCH
Q 009519 388 PGD-FMGLREGASLLEVVRKVKPHVLLGLSGVGG-----VFNEEVLKAMRESDSVKPAIFAMSNPT-MNAECTA 454 (533)
Q Consensus 388 ~~~-~~~~~~~~~L~e~V~~vkptvLIG~S~~~g-----~Fteevv~~Ma~~~~erPIIFaLSNPt-~~aE~tp 454 (533)
..+ +.. .....+.+.++ +.|++|.+++.+| +++++.++.|. +.-+|.=++-+. ..+|++.
T Consensus 230 ~s~~~~~-~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mk----pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 230 MSEEFIK-AEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMK----PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred cchhHHH-HHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcC----CCCEEEEEccCCCCCccccc
Confidence 100 000 00011222233 3899999999876 67999999994 455666677653 3345553
No 58
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=93.22 E-value=0.12 Score=51.83 Aligned_cols=132 Identities=20% Similarity=0.256 Sum_probs=83.0
Q ss_pred EEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC-CCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 326 IVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE-RKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 326 iv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
|.|+|| |..|.++|..|+.. |. .....++|+|.+.-..+. ..++.+...++ ... .. ....++.++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~-~i---~~~~d~~~~ 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADI-KV---SITDDPYEA 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhc-cCc-EE---EECCchHHH
Confidence 579999 99999999887753 31 112589999985411111 11232222222 111 11 124568899
Q ss_pred hcccCCcEEEEeccCCCC--------------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCcEEE
Q 009519 404 VRKVKPHVLLGLSGVGGV--------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIVF 467 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~--------------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Grai~ 467 (533)
+++ +|++|=+.+.++. .-+++.+.|. ++++..+++-.|||.. ....-+++++ .-.-+|
T Consensus 68 ~~~--aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~-~~~p~a~~i~~tNP~d---~~t~~~~~~sg~~~~kvi 141 (263)
T cd00650 68 FKD--ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIE-KYSPDAWIIVVSNPVD---IITYLVWRYSGLPKEKVI 141 (263)
T ss_pred hCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHH-HHCCCeEEEEecCcHH---HHHHHHHHHhCCCchhEE
Confidence 988 8998854433221 3578888885 4889999999999995 6666677773 345688
Q ss_pred ecCCCCccee
Q 009519 468 ASGSPFENVD 477 (533)
Q Consensus 468 AtGSPf~pv~ 477 (533)
++|. .++..
T Consensus 142 G~~~-ld~~r 150 (263)
T cd00650 142 GLGT-LDPIR 150 (263)
T ss_pred Eeec-chHHH
Confidence 9986 65543
No 59
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.09 E-value=0.13 Score=53.29 Aligned_cols=127 Identities=21% Similarity=0.265 Sum_probs=75.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCC--cC-CccCCCCH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FM-GLREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~--~~-~~~~~~~L 400 (533)
.||.|+|+|..|.++|..++.. |+ -+++++|..--+..++ ...+.+.... .. ......++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~-----g~------~~VvlvDi~~~l~~g~------a~d~~~~~~~~~~~~~i~~t~d~ 64 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK-----EL------ADLVLLDVVEGIPQGK------ALDMYEASPVGGFDTKVTGTNNY 64 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCCCChhHHH------HHhhhhhhhccCCCcEEEecCCH
Confidence 4899999999999999987653 33 1499999832221111 1111111000 00 01123567
Q ss_pred HHHhcccCCcEEEEeccC---CC-C------CC----HHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCc
Q 009519 401 LEVVRKVKPHVLLGLSGV---GG-V------FN----EEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GEN 464 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~---~g-~------Ft----eevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Gr 464 (533)
.+ ++. .|++|=+.+. +| . ++ +++++.|.+ ++.+.+|+-.|||.. +...-+++++ .-+
T Consensus 65 ~~-~~~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~-~~p~~~iIv~tNP~d---i~t~~~~~~sg~~~~ 137 (305)
T TIGR01763 65 AD-TAN--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIME-HSPNPIIVVVSNPLD---AMTYVAWQKSGFPKE 137 (305)
T ss_pred HH-hCC--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHHHCcCHH
Confidence 76 666 7887633332 22 1 33 345555654 788999999999996 7777777774 224
Q ss_pred EEEecCCCCc
Q 009519 465 IVFASGSPFE 474 (533)
Q Consensus 465 ai~AtGSPf~ 474 (533)
-+|++|.=.+
T Consensus 138 rviG~g~~ld 147 (305)
T TIGR01763 138 RVIGQAGVLD 147 (305)
T ss_pred HEEEeccchH
Confidence 5889885444
No 60
>PRK06223 malate dehydrogenase; Reviewed
Probab=92.98 E-value=0.18 Score=51.49 Aligned_cols=126 Identities=17% Similarity=0.216 Sum_probs=74.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCC--cCC-ccCCCCH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FMG-LREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~--~~~-~~~~~~L 400 (533)
.||.|+|||..|.++|..+... |+ ..++++|.+ .++ +......+.+.... ... .....+.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~-----~~------~ev~L~D~~----~~~--~~~~~~dl~~~~~~~~~~~~i~~~~d~ 65 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALK-----EL------GDVVLFDIV----EGV--PQGKALDIAEAAPVEGFDTKITGTNDY 65 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC------eEEEEEECC----Cch--hHHHHHHHHhhhhhcCCCcEEEeCCCH
Confidence 5899999999999999987642 33 169999982 111 11111111111000 000 0112456
Q ss_pred HHHhcccCCcEEEEe---ccCCC-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCC---
Q 009519 401 LEVVRKVKPHVLLGL---SGVGG-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGE--- 463 (533)
Q Consensus 401 ~e~V~~vkptvLIG~---S~~~g-----------~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~G--- 463 (533)
+++++ +|++|=+ ...+| -.-+++++.|.+ .++..+++-.|||.. ....-+++++ |
T Consensus 66 -~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~-~~~~~~viv~tNP~d---~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 66 -EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKK-YAPDAIVIVVTNPVD---AMTYVALKES-GFPK 137 (307)
T ss_pred -HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHHh-CCCc
Confidence 45776 8988832 22222 223566677754 778888888899996 5555666665 4
Q ss_pred cEEEecCCCCc
Q 009519 464 NIVFASGSPFE 474 (533)
Q Consensus 464 rai~AtGSPf~ 474 (533)
+-+|++|.-.+
T Consensus 138 ~~viG~gt~ld 148 (307)
T PRK06223 138 NRVIGMAGVLD 148 (307)
T ss_pred ccEEEeCCCcH
Confidence 56899985554
No 61
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=92.94 E-value=0.059 Score=49.71 Aligned_cols=113 Identities=22% Similarity=0.351 Sum_probs=67.9
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-CccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~-GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
||.|+|| |..|..+|-+|+.. |+- ++|.|+|.+ ......--+|.+...+.-++. ....+..+
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-----~l~-----~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~------~i~~~~~~ 65 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-----GLA-----DEIVLIDINEDKAEGEALDLSHASAPLPSPV------RITSGDYE 65 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TTS-----SEEEEEESSHHHHHHHHHHHHHHHHGSTEEE------EEEESSGG
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CCC-----CceEEeccCcccceeeehhhhhhhhhccccc------cccccccc
Confidence 8999999 99999999988763 443 469999986 211110012332221111111 01124567
Q ss_pred HhcccCCcEEEEeccC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhc
Q 009519 403 VVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 459 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~ 459 (533)
++++ .|++|=+.+. +|- +-+++.+.+++ ++++.+++-.|||.. ...+-+++
T Consensus 66 ~~~~--aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~-~~p~~~vivvtNPvd---~~t~~~~~ 130 (141)
T PF00056_consen 66 ALKD--ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAK-YAPDAIVIVVTNPVD---VMTYVAQK 130 (141)
T ss_dssp GGTT--ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHH-HSTTSEEEE-SSSHH---HHHHHHHH
T ss_pred cccc--ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHH-hCCccEEEEeCCcHH---HHHHHHHH
Confidence 7877 8998844433 232 23456666654 789999999999974 55555555
No 62
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=92.56 E-value=0.2 Score=51.74 Aligned_cols=49 Identities=18% Similarity=0.442 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.|++.+++..+.++++ .+++|+|||-|+.+|+-.+.. .|. ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~---k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKG---KTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCC---CEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 3578888877888877 899999999998887776654 354 589999984
No 63
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=92.47 E-value=0.46 Score=47.15 Aligned_cols=101 Identities=15% Similarity=0.185 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhC---------CCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcccc
Q 009519 303 ALAGLLGTVRAQG---------LSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (533)
Q Consensus 303 ~LAgli~Alr~~g---------~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~ 372 (533)
|-.|++-=|+..+ .+++. ++++|+|-+ ..|.-+|.||.. +| ..+.+||++|....
T Consensus 36 Tp~avi~lL~~~~i~~~~~~~~~~l~G---K~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~ 100 (197)
T cd01079 36 TPLAIVKILEFLGIYNKILPYGNRLYG---KTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVF 100 (197)
T ss_pred CHHHHHHHHHHhCCcccccccCCCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCccccc
Confidence 4455555555554 36666 999999986 568888888765 23 36899999998876
Q ss_pred CCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCC-CCHHHHH
Q 009519 373 ERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGV-FNEEVLK 428 (533)
Q Consensus 373 ~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~-Fteevv~ 428 (533)
.+.....|. ..+..+ ...+|.|.+++ +|++|-.-+.++. ++.|+|+
T Consensus 101 ~~~~~~~hs--~t~~~~------~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 101 TRGESIRHE--KHHVTD------EEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred ccccccccc--cccccc------hhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 553211111 000000 01248899998 9999999999998 9999998
No 64
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.32 E-value=0.074 Score=49.49 Aligned_cols=97 Identities=18% Similarity=0.303 Sum_probs=53.5
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhh--ccccccCCc-CCccCCCCHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA--PFAKDPGDF-MGLREGASLL 401 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~--~~A~~~~~~-~~~~~~~~L~ 401 (533)
||.|+|||+.|+++|..+... | .++.|.+++.-..+ .++.... .|... -.. ....-..+|+
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-----g-------~~V~l~~~~~~~~~---~i~~~~~n~~~~~~-~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-----G-------HEVTLWGRDEEQIE---EINETRQNPKYLPG-IKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-----T-------EEEEEETSCHHHHH---HHHHHTSETTTSTT-SBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHHc-----C-------CEEEEEeccHHHHH---HHHHhCCCCCCCCC-cccCcccccccCHH
Confidence 799999999999999988764 3 36777766531111 1111111 01100 000 0001236799
Q ss_pred HHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEE
Q 009519 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIF 441 (533)
+++++ +|++| +. +|--+-+++++.++....+..+|+
T Consensus 65 ~a~~~--ad~Ii-ia-vPs~~~~~~~~~l~~~l~~~~~ii 100 (157)
T PF01210_consen 65 EALED--ADIII-IA-VPSQAHREVLEQLAPYLKKGQIII 100 (157)
T ss_dssp HHHTT---SEEE-E--S-GGGHHHHHHHHTTTSHTT-EEE
T ss_pred HHhCc--ccEEE-ec-ccHHHHHHHHHHHhhccCCCCEEE
Confidence 99988 78766 33 355577899999965333333333
No 65
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.27 E-value=0.73 Score=48.12 Aligned_cols=127 Identities=17% Similarity=0.298 Sum_probs=78.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||..|..+|.+|+. .|+. ..|.|+|.+-=..++. -+|.+.. +|-+.. .. ...+. +
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~~-----~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~-~i----~~~~~-~ 69 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGIA-----DELVIIDINKEKAEGDAMDLSHAV-PFTSPT-KI----YAGDY-S 69 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCCchhHHHHHHHHhhc-cccCCe-EE----EeCCH-H
Confidence 699999999999999998764 3443 5799999732111111 1233222 221111 10 12344 4
Q ss_pred HhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCcEE
Q 009519 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIV 466 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Grai 466 (533)
.+++ .|++|=+.+.+ |- +=+++++.|++ ++...+|+-.|||.. +...-+++++ .-+-+
T Consensus 70 ~~~~--adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~-~~~~~~vivvsNP~d---~~~~~~~k~sg~p~~~v 143 (315)
T PRK00066 70 DCKD--ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMA-SGFDGIFLVASNPVD---ILTYATWKLSGFPKERV 143 (315)
T ss_pred HhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCcHH---HHHHHHHHHhCCCHHHE
Confidence 5777 89988555543 31 12456777754 788999999999995 6666777776 34457
Q ss_pred EecCCCC
Q 009519 467 FASGSPF 473 (533)
Q Consensus 467 ~AtGSPf 473 (533)
|++|.--
T Consensus 144 iG~gt~L 150 (315)
T PRK00066 144 IGSGTSL 150 (315)
T ss_pred eecCchH
Confidence 7887554
No 66
>PRK08328 hypothetical protein; Provisional
Probab=92.20 E-value=0.068 Score=53.22 Aligned_cols=124 Identities=22% Similarity=0.287 Sum_probs=72.6
Q ss_pred HHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeE
Q 009519 282 LERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (533)
Q Consensus 282 L~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i 361 (533)
++||..++..|..+. -.+|++ .||+|+|+|..|..+|+.|+.+++ ++|
T Consensus 7 ~~ry~Rq~~~~g~~~------------------q~~L~~---~~VlIiG~GGlGs~ia~~La~~Gv-----------g~i 54 (231)
T PRK08328 7 LERYDRQIMIFGVEG------------------QEKLKK---AKVAVVGVGGLGSPVAYYLAAAGV-----------GRI 54 (231)
T ss_pred HHHHhhHHHhcCHHH------------------HHHHhC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEE
Confidence 578877766665432 234455 899999999999999999987654 689
Q ss_pred EEEeccCccccCCCCCChhhhccccccCCcCCcc-CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeE
Q 009519 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR-EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAI 440 (533)
Q Consensus 362 ~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~-~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPII 440 (533)
.++|.+=+ +..+|+.+ -.|-.. +. |.. ......+.++...|++-|=.. .+.++++-+...- .+.-+|
T Consensus 55 ~lvD~D~v---e~sNL~Rq-~l~~~~--dv-G~~~k~~~a~~~l~~~np~v~v~~~--~~~~~~~~~~~~l---~~~D~V 122 (231)
T PRK08328 55 LLIDEQTP---ELSNLNRQ-ILHWEE--DL-GKNPKPLSAKWKLERFNSDIKIETF--VGRLSEENIDEVL---KGVDVI 122 (231)
T ss_pred EEEcCCcc---Chhhhccc-cccChh--hc-CchHHHHHHHHHHHHhCCCCEEEEE--eccCCHHHHHHHH---hcCCEE
Confidence 99997521 12244431 111111 10 100 001234456677788877654 3556776655542 245566
Q ss_pred E-ecCCCCCc
Q 009519 441 F-AMSNPTMN 449 (533)
Q Consensus 441 F-aLSNPt~~ 449 (533)
| +.-|+..+
T Consensus 123 id~~d~~~~r 132 (231)
T PRK08328 123 VDCLDNFETR 132 (231)
T ss_pred EECCCCHHHH
Confidence 6 45576543
No 67
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=92.19 E-value=1 Score=48.52 Aligned_cols=163 Identities=18% Similarity=0.143 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.|=-+++.+++..|..|..|.+ .++.|+|.|..|..+|+.+..+ |+ +++.+|... ...
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~g---ktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp~~------~~~- 152 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAE---RTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDPPR------QEA- 152 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCc---CEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCcc------ccc-
Confidence 3445688899988888888888 9999999999999999998765 43 688888621 100
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEE-ec-------cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcc
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLG-LS-------GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNA 450 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG-~S-------~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~a 450 (533)
... ....+|.|+++. .|+++= +. ..-+.|+++.+..|. +..++.=.|.-..--
T Consensus 153 -------~~~------~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk----~gailIN~aRG~vVd 213 (381)
T PRK00257 153 -------EGD------GDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR----PGAWLINASRGAVVD 213 (381)
T ss_pred -------ccC------ccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC----CCeEEEECCCCcccC
Confidence 000 013469999887 788661 11 124899999999994 677888777643322
Q ss_pred cCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhHHHHHhCCc
Q 009519 451 ECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGAR 508 (533)
Q Consensus 451 E~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~ 508 (533)
|..-.+|++ .|+...|.=-=|++-...+.. =.-.|+.+-|=|+-....++.+
T Consensus 214 e~AL~~aL~--~g~i~~a~LDV~e~EP~~~~~----L~~~nvi~TPHiAg~s~e~~~r 265 (381)
T PRK00257 214 NQALREALL--SGEDLDAVLDVWEGEPQIDLE----LADLCTIATPHIAGYSLDGKAR 265 (381)
T ss_pred HHHHHHHHH--hCCCcEEEEeCCCCCCCCChh----hhhCCEEEcCccccCCHHHHHH
Confidence 222223333 444332211111100001111 1123788888887655555443
No 68
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=92.15 E-value=0.22 Score=51.35 Aligned_cols=57 Identities=26% Similarity=0.257 Sum_probs=42.0
Q ss_pred CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 289 ~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++=||=|-. |++.+++..+..+++ .+++++|||-|+-+|+-.|.+. |. ++|+++|+.
T Consensus 104 l~G~NTD~~--------Gf~~~L~~~~~~~~~---k~vlilGaGGaarAi~~aL~~~-----g~------~~i~i~nR~ 160 (283)
T PRK14027 104 TTGHNTDVS--------GFGRGMEEGLPNAKL---DSVVQVGAGGVGNAVAYALVTH-----GV------QKLQVADLD 160 (283)
T ss_pred EEEEcCCHH--------HHHHHHHhcCcCcCC---CeEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCC
Confidence 344555544 478888754445666 8999999999999998887654 44 589999873
No 69
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=92.15 E-value=0.28 Score=44.29 Aligned_cols=113 Identities=18% Similarity=0.315 Sum_probs=67.0
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcc
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF 384 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~ 384 (533)
.|+.+|++..+.+++. .+++|+|+|..|..+++.+.+. |. .+++++|++ .+ ........+
T Consensus 4 ~g~~~a~~~~~~~~~~---~~i~iiG~G~~g~~~a~~l~~~-----g~------~~v~v~~r~----~~--~~~~~~~~~ 63 (155)
T cd01065 4 LGFVRALEEAGIELKG---KKVLILGAGGAARAVAYALAEL-----GA------AKIVIVNRT----LE--KAKALAERF 63 (155)
T ss_pred HHHHHHHHhhCCCCCC---CEEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCC----HH--HHHHHHHHH
Confidence 5899999988877777 9999999999888888887543 21 478888874 11 111111222
Q ss_pred ccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCC-CHHH---HHHhhhcCCCCCeEEecC-CCCC
Q 009519 385 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVF-NEEV---LKAMRESDSVKPAIFAMS-NPTM 448 (533)
Q Consensus 385 A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~F-teev---v~~Ma~~~~erPIIFaLS-NPt~ 448 (533)
...... ....++.++++. +|++|-+.. ++.. .+++ ...+ .+..+|+=+| +|..
T Consensus 64 ~~~~~~----~~~~~~~~~~~~--~Dvvi~~~~-~~~~~~~~~~~~~~~~----~~~~~v~D~~~~~~~ 121 (155)
T cd01065 64 GELGIA----IAYLDLEELLAE--ADLIINTTP-VGMKPGDELPLPPSLL----KPGGVVYDVVYNPLE 121 (155)
T ss_pred hhcccc----eeecchhhcccc--CCEEEeCcC-CCCCCCCCCCCCHHHc----CCCCEEEEcCcCCCC
Confidence 110000 012456676766 899997765 3432 1111 1122 3567888775 4554
No 70
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.08 E-value=0.19 Score=51.03 Aligned_cols=135 Identities=13% Similarity=0.171 Sum_probs=69.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc-ccCCCCCChhhhccccccCC---------cCC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI-TKERKNLDPAAAPFAKDPGD---------FMG 393 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi-~~~r~~l~~~k~~~A~~~~~---------~~~ 393 (533)
.||.|+|+|..|.+||..+... |. +++++|.+--- ...+..+......+.+...- ...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----GF-------DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNR 71 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----CC-------eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcC
Confidence 5899999999999999887653 43 68899864110 00000000000111100000 000
Q ss_pred ccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC-CcEEEecCCC
Q 009519 394 LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG-ENIVFASGSP 472 (533)
Q Consensus 394 ~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~-Grai~AtGSP 472 (533)
.....++.++++. .|++|=+-...-.+.+++++...+ ..+...|+ .||.+.+ .+.++.+... ... |....|
T Consensus 72 i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~-~~~~~~ii-~sntSt~---~~~~~~~~~~~~~r-~vg~Hf 143 (287)
T PRK08293 72 ITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAK-VAPEKTIF-ATNSSTL---LPSQFAEATGRPEK-FLALHF 143 (287)
T ss_pred eEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHh-hCCCCCEE-EECcccC---CHHHHHhhcCCccc-EEEEcC
Confidence 0123578888887 788875432112356677777754 33444455 3565553 4444444322 122 333578
Q ss_pred Ccceec
Q 009519 473 FENVDL 478 (533)
Q Consensus 473 f~pv~~ 478 (533)
|.|+..
T Consensus 144 ~~p~~~ 149 (287)
T PRK08293 144 ANEIWK 149 (287)
T ss_pred CCCCCc
Confidence 888753
No 71
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.04 E-value=0.45 Score=49.61 Aligned_cols=83 Identities=14% Similarity=0.258 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++..++-.+.+++. .+++|+|.+- .|.-+|.+|... | ..+.+|+++
T Consensus 144 ~PcTp~av~~ll~~~~i~l~G---k~vvViGrs~iVGkPla~lL~~~-----~-------atVtv~hs~----------- 197 (287)
T PRK14176 144 VPCTPHGVIRALEEYGVDIEG---KNAVIVGHSNVVGKPMAAMLLNR-----N-------ATVSVCHVF----------- 197 (287)
T ss_pred CCCcHHHHHHHHHHcCCCCCC---CEEEEECCCcccHHHHHHHHHHC-----C-------CEEEEEecc-----------
Confidence 456888999999999999988 9999999988 999999998752 3 256777642
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.|+.+++++|+
T Consensus 198 ------------------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 ------------------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1247888888 99999999999999999777
No 72
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=92.01 E-value=0.23 Score=50.17 Aligned_cols=137 Identities=16% Similarity=0.173 Sum_probs=88.6
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCC-CCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcccc
Q 009519 294 DDIQGTAGVALAGLLGTVRAQGLS-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (533)
Q Consensus 294 DDiQGTaaV~LAgli~Alr~~g~~-l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~ 372 (533)
|--+-||-=+..++-.+++..+.. ++. .|++|-|.|..|...|+.|.+... +=+-+.|++|.|++
T Consensus 5 ~~~~aTg~GV~~~~~~~~~~~~~~~l~g---~~v~IqGfG~VG~~~a~~l~~~Ga-----------~vv~vsD~~G~i~~ 70 (244)
T PF00208_consen 5 GRSEATGYGVAYAIEAALEHLGGDSLEG---KRVAIQGFGNVGSHAARFLAELGA-----------KVVAVSDSSGAIYD 70 (244)
T ss_dssp TTTTHHHHHHHHHHHHHHHHTTCHSSTT---CEEEEEESSHHHHHHHHHHHHTTE-----------EEEEEEESSEEEEE
T ss_pred CCCcchHHHHHHHHHHHHHHcCCCCcCC---CEEEEECCCHHHHHHHHHHHHcCC-----------EEEEEecCceEEEc
Confidence 344567777888888999986665 777 999999999999999999987533 34667799999886
Q ss_pred CCC----CCChhhhccccccCCcCCc-c-CCCCHHH--HhcccCCcEEEEeccCCCCCCHHHHH-HhhhcCCCCCeEEec
Q 009519 373 ERK----NLDPAAAPFAKDPGDFMGL-R-EGASLLE--VVRKVKPHVLLGLSGVGGVFNEEVLK-AMRESDSVKPAIFAM 443 (533)
Q Consensus 373 ~r~----~l~~~k~~~A~~~~~~~~~-~-~~~~L~e--~V~~vkptvLIG~S~~~g~Fteevv~-~Ma~~~~erPIIFaL 443 (533)
... .|-.++...--.-...... + ...-+.+ .+-.++.||||=+. .++.+|++.+. .+. +.-+||.--
T Consensus 71 ~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A-~~~~I~~~~~~~~i~---~~akiIveg 146 (244)
T PF00208_consen 71 PDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCA-LGNVINEDNAPSLIK---SGAKIIVEG 146 (244)
T ss_dssp TTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEES-SSTSBSCHHHCHCHH---TT-SEEEES
T ss_pred CCCchHHHHHHHHHHhCCcccccccccccceeEeccccccccccccEEEEcC-CCCeeCHHHHHHHHh---ccCcEEEeC
Confidence 441 1222211110000000000 0 0000111 34446899999884 68999999999 773 357899999
Q ss_pred CC-CCC
Q 009519 444 SN-PTM 448 (533)
Q Consensus 444 SN-Pt~ 448 (533)
+| |+.
T Consensus 147 AN~p~t 152 (244)
T PF00208_consen 147 ANGPLT 152 (244)
T ss_dssp SSSSBS
T ss_pred cchhcc
Confidence 99 553
No 73
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=91.98 E-value=0.25 Score=41.43 Aligned_cols=95 Identities=15% Similarity=0.216 Sum_probs=60.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEE-eccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLL-DKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lv-D~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+|+|..|.++++.+... |. ...+|+++ +++ . +.+.+.++.+... ....+..|+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~----~--~~~~~~~~~~~~~-------~~~~~~~~~ 58 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS----P--EKAAELAKEYGVQ-------ATADDNEEA 58 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS----H--HHHHHHHHHCTTE-------EESEEHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc----H--HHHHHHHHhhccc-------cccCChHHh
Confidence 789999999999999888764 43 22577755 552 1 1122222222210 012368999
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
++. +|++| ++. +...-+++.+.+ +...+..+|..++||
T Consensus 59 ~~~--advvi-lav-~p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 59 AQE--ADVVI-LAV-KPQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH--TSEEE-E-S--GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred hcc--CCEEE-EEE-CHHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 997 89977 554 445556788887 336788999988886
No 74
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=91.90 E-value=0.8 Score=49.54 Aligned_cols=185 Identities=10% Similarity=0.093 Sum_probs=98.2
Q ss_pred ccCChhhHHHHHhcCCCCCeeEE-EEecCceeeccCCCCCCcccccchhh------hhHhhhcCCCCCc-eecEEeeccC
Q 009519 153 SAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKL------DVYVAAAGINPQR-ILPVMLDVGT 224 (533)
Q Consensus 153 s~~d~~~i~~~l~n~p~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~~GKl------~LY~a~aGI~P~~-~lPI~LDvGT 224 (533)
+..|-..+..+|+.. ++++. +++| +.+.-+--.+.+-.-+..+.. .| ..+ |+..-. .+|+-+
T Consensus 176 ~~~d~~el~~lL~~~---Gi~v~~~lp~-~~~~d~~~~~~~~~~~~~~~~~~~~A~~L-~~~-GiP~~~~~~P~G~---- 245 (427)
T PRK02842 176 ADVVEDQLTLEFKKL---GIGVVGFLPA-RRFTELPAIGPGTVVALAQPFLSDTARAL-RER-GAKVLTAPFPLGP---- 245 (427)
T ss_pred CcchHHHHHHHHHHc---CCeeEEEeCC-ccHHHHhhcCcCcEEEEeCHHHHHHHHHH-HHc-CCccccCCCCcCh----
Confidence 345556788888864 56664 7787 556655555443222222222 12 455 665322 244322
Q ss_pred CchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhccCceeccCcchhHHHHH
Q 009519 225 NNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVAL 304 (533)
Q Consensus 225 nN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~L 304 (533)
+-.|+|++.+.+.+.. ..+.+-+.+++.|.
T Consensus 246 -------------------------~~T~~~L~~la~~~g~--------~~~~~~~~~~~er~----------------- 275 (427)
T PRK02842 246 -------------------------EGTRAWLEAAAAAFGI--------DPDGLEEREAPAWE----------------- 275 (427)
T ss_pred -------------------------HHHHHHHHHHHHHhCc--------CHhHHHHHHHHHHH-----------------
Confidence 2378888888887631 11222233444442
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcc
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF 384 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~ 384 (533)
-+..++....+.++. .|++|+|.+.-.+++++.|.+ +.|+. +..+-+. +..++.+.+.-+.+
T Consensus 276 -~~~~~l~~~~~~l~G---krvai~g~~~~~~~la~~L~e----elGm~-------~v~v~t~---~~~~~~~~~~~~~l 337 (427)
T PRK02842 276 -RARKALEPYRELLRG---KRVFFLPDSQLEIPLARFLSR----ECGME-------LVEVGTP---YLNRRFLAAELALL 337 (427)
T ss_pred -HHHHHHHHhhhhcCC---cEEEEECCchhHHHHHHHHHH----hCCCE-------EEEeCCC---CCCHHHHHHHHHhc
Confidence 245555566666777 999999999889999999876 13552 2222111 01111111111112
Q ss_pred ccccCCcCCccCCCCHHHHhcccCCcEEEEec
Q 009519 385 AKDPGDFMGLREGASLLEVVRKVKPHVLLGLS 416 (533)
Q Consensus 385 A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S 416 (533)
.....-..+ .+...+++.++..|||.|||-|
T Consensus 338 ~~~~~v~~~-~D~~~l~~~i~~~~pDllig~~ 368 (427)
T PRK02842 338 PDGVRIVEG-QDVERQLDRIRALRPDLVVCGL 368 (427)
T ss_pred cCCCEEEEC-CCHHHHHHHHHHcCCCEEEccC
Confidence 111000000 1223468899999999999977
No 75
>PTZ00325 malate dehydrogenase; Provisional
Probab=91.88 E-value=0.86 Score=47.99 Aligned_cols=107 Identities=22% Similarity=0.242 Sum_probs=67.5
Q ss_pred CCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCC
Q 009519 322 ADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 322 ~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+-.||+|.|| |..|..+|..|.. .++. ..+.|+|.+ .. .+. -+|.+... ...- ....+..+
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~-----~~~~-----~elvL~Di~-~~-~g~a~Dl~~~~~-~~~v----~~~td~~~ 69 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQ-----NPHV-----SELSLYDIV-GA-PGVAADLSHIDT-PAKV----TGYADGEL 69 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhc-----CCCC-----CEEEEEecC-CC-cccccchhhcCc-CceE----EEecCCCc
Confidence 3479999999 9999999987752 2332 579999982 21 111 13332111 0010 00011134
Q ss_pred HHHHhcccCCcEEEEeccC---CC--------C---CCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 400 LLEVVRKVKPHVLLGLSGV---GG--------V---FNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~---~g--------~---Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
..+++++ .|++|=+.+. +| . ..++++++|.+ ++.+.||+.-|||..
T Consensus 70 ~~~~l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~-~~~~~iviv~SNPvd 129 (321)
T PTZ00325 70 WEKALRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVAS-SAPKAIVGIVSNPVN 129 (321)
T ss_pred hHHHhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH
Confidence 5788988 8987744444 33 1 45688889964 888999999999996
No 76
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=91.87 E-value=0.26 Score=50.43 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=63.1
Q ss_pred CceeccCcchhHHHHHHHHHHHHHHhCC--CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 289 FCMFNDDIQGTAGVALAGLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 289 ~~~FnDDiQGTaaV~LAgli~Alr~~g~--~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
+.=||=|-.| ++.+++..+. ++++ ++++|+|||.||-+|+..|.+. |. ++|+++++
T Consensus 100 l~G~NTD~~G--------~~~~l~~~~~~~~~~~---k~vlvlGaGGaarai~~aL~~~-----G~------~~i~I~nR 157 (282)
T TIGR01809 100 WKGDNTDWDG--------IAGALANIGKFEPLAG---FRGLVIGAGGTSRAAVYALASL-----GV------TDITVINR 157 (282)
T ss_pred EEEecCCHHH--------HHHHHHhhCCccccCC---ceEEEEcCcHHHHHHHHHHHHc-----CC------CeEEEEeC
Confidence 4456777654 7788876553 4667 9999999999999988877654 44 58999987
Q ss_pred cCccccCC-CCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 367 DGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 367 ~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
. .+| ..|.+ .|.... .........++.+++.. +|++|.++..+-.++.+.+.
T Consensus 158 t----~~ka~~La~---~~~~~~-~~~~~~~~~~~~~~~~~--~DiVInaTp~g~~~~~~~l~ 210 (282)
T TIGR01809 158 N----PDKLSRLVD---LGVQVG-VITRLEGDSGGLAIEKA--AEVLVSTVPADVPADYVDLF 210 (282)
T ss_pred C----HHHHHHHHH---HhhhcC-cceeccchhhhhhcccC--CCEEEECCCCCCCCCHHHhh
Confidence 3 222 11211 111100 00000000123344444 89999998766556555443
No 77
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=91.83 E-value=0.11 Score=48.87 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=51.3
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC-------------ccccCCCCCChhhhccccc
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG-------------LITKERKNLDPAAAPFAKD 387 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G-------------Li~~~r~~l~~~k~~~A~~ 387 (533)
+...||||.|+|.+|.|.++++..... ++...|..= +.+.....+.. +.|++.
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa------------~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~ 83 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGA------------EVVVPDERPERLRQLESLGAYFIEVDYEDHLER--KDFDKA 83 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-------------EEEEEESSHHHHHHHHHTTTEESEETTTTTTTS--B-CCHH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCC------------EEEeccCCHHHHHhhhcccCceEEEcccccccc--cccchh
Confidence 334899999999999999999987654 455555420 00100000000 002221
Q ss_pred cCCcCCccCCCCHHHHhcccCCcEEEEecc-----CCCCCCHHHHHHhh
Q 009519 388 PGDFMGLREGASLLEVVRKVKPHVLLGLSG-----VGGVFNEEVLKAMR 431 (533)
Q Consensus 388 ~~~~~~~~~~~~L~e~V~~vkptvLIG~S~-----~~g~Fteevv~~Ma 431 (533)
...-........|.+.++. .|++|+..- .|-+||++.++.|.
T Consensus 84 ~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 84 DYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 1000000122458888887 899997533 34689999999993
No 78
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=91.69 E-value=0.21 Score=45.07 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=30.7
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
+.||+++|+|+-|.-+|+.|+..++ ++|.++|.+=+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv-----------~~i~lvD~d~v 37 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGV-----------GKITLVDDDIV 37 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTT-----------SEEEEEESSBB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCC-----------CceeecCCcce
Confidence 4899999999999999999998755 69999998733
No 79
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=91.59 E-value=0.16 Score=55.78 Aligned_cols=134 Identities=23% Similarity=0.307 Sum_probs=82.9
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC-CChhhhccccc-cCCcCCccCCCC
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDPAAAPFAKD-PGDFMGLREGAS 399 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~-l~~~k~~~A~~-~~~~~~~~~~~~ 399 (533)
++.||+|+||||.. .++++...+.+.+.++. ..|||+|-+ .+|.+ .-..-+.+.+. ..+++ .....+
T Consensus 2 ~~~KI~iIGgGSt~--tp~~v~g~l~~~e~l~~----~el~L~Did----~~r~~~i~~~~~~~v~~~g~~~k-v~~ttd 70 (442)
T COG1486 2 KKFKIVIIGGGSTY--TPKLLLGDLARTEELPV----RELALYDID----EERLKIIAILAKKLVEEAGAPVK-VEATTD 70 (442)
T ss_pred CcceEEEECCCccc--cHHHHHHHHhcCccCCc----ceEEEEeCC----HHHHHHHHHHHHHHHHhhCCCeE-EEEecC
Confidence 45899999999974 56788777776677775 689999973 34422 11111223322 22111 123478
Q ss_pred HHHHhcccCCcEEE---------------------Ee-----ccCCCCCC--------HHHHHHhhhcCCCCCeEEecCC
Q 009519 400 LLEVVRKVKPHVLL---------------------GL-----SGVGGVFN--------EEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 400 L~e~V~~vkptvLI---------------------G~-----S~~~g~Ft--------eevv~~Ma~~~~erPIIFaLSN 445 (533)
+.||+++ +|.+| |+ .+.||.|. -|+++.| ++.++.--++=.+|
T Consensus 71 ~~eAl~g--AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m-~~~~P~Aw~lNytN 147 (442)
T COG1486 71 RREALEG--ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDM-EKVCPNAWMLNYTN 147 (442)
T ss_pred HHHHhcC--CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHH-HHhCCCceEEeccC
Confidence 9999999 77776 11 11222221 3889999 45899999999999
Q ss_pred CCCcccCCHHHHhcccCC-cEEEecCCC
Q 009519 446 PTMNAECTAADAFKHAGE-NIVFASGSP 472 (533)
Q Consensus 446 Pt~~aE~tpe~A~~wt~G-rai~AtGSP 472 (533)
|.. ++| |-+++|+.. +.|=-+=+|
T Consensus 148 P~~--~vT-eAv~r~~~~~K~VGlCh~~ 172 (442)
T COG1486 148 PAA--IVT-EAVRRLYPKIKIVGLCHGP 172 (442)
T ss_pred hHH--HHH-HHHHHhCCCCcEEeeCCch
Confidence 987 454 455666665 444333333
No 80
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.55 E-value=0.48 Score=49.30 Aligned_cols=83 Identities=18% Similarity=0.333 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhH-HHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSA-GLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsA-g~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.-++..+.+++. .+++++|.|.- |.-+|.+|... |. .+.+|+++
T Consensus 138 ~PcTp~aii~lL~~~~i~l~G---k~vvViGrs~iVGkPla~lL~~~-----~a-------tVt~~hs~----------- 191 (285)
T PRK14189 138 RPCTPYGVMKMLESIGIPLRG---AHAVVIGRSNIVGKPMAMLLLQA-----GA-------TVTICHSK----------- 191 (285)
T ss_pred cCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEecCC-----------
Confidence 456778889999999999988 99999999988 99999998753 32 56665431
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|+.++++
T Consensus 192 ------------------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 ------------------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred ------------------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1347888888 99999999999999997776
No 81
>PLN02928 oxidoreductase family protein
Probab=91.48 E-value=3 Score=44.24 Aligned_cols=174 Identities=16% Similarity=0.170 Sum_probs=96.3
Q ss_pred chhHHHHHHHHHHHHHHh----------------CCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCe
Q 009519 297 QGTAGVALAGLLGTVRAQ----------------GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (533)
Q Consensus 297 QGTaaV~LAgli~Alr~~----------------g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~ 360 (533)
+.+|--+++.+++.+|-. +..|. ++++.|+|.|..|..+|+.+... |+ +
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~---gktvGIiG~G~IG~~vA~~l~af-----G~-------~ 184 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLF---GKTVFILGYGAIGIELAKRLRPF-----GV-------K 184 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCC---CCEEEEECCCHHHHHHHHHHhhC-----CC-------E
Confidence 345556666666666532 23344 49999999999999999999765 43 6
Q ss_pred EEEEeccCccccCCC-CCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCC
Q 009519 361 FFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDS 435 (533)
Q Consensus 361 i~lvD~~GLi~~~r~-~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~ 435 (533)
|+.+|+..- .... .+. .+......... .. ....+|.|+++. .|+++-.- ...+.|+++.+..|.
T Consensus 185 V~~~dr~~~--~~~~~~~~-~~~~~~~~~~~-~~-~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---- 253 (347)
T PLN02928 185 LLATRRSWT--SEPEDGLL-IPNGDVDDLVD-EK-GGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---- 253 (347)
T ss_pred EEEECCCCC--hhhhhhhc-ccccccccccc-cc-CcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC----
Confidence 888887420 0000 000 00011000000 00 123579999998 89988542 224899999999993
Q ss_pred CCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhhH
Q 009519 436 VKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGL 500 (533)
Q Consensus 436 erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGigl 500 (533)
+..++.=.|.-.---|-.--+|++ .|+.-.|.=-=|.+-..+.. ..--+..|+.+-|=++-
T Consensus 254 ~ga~lINvaRG~lVde~AL~~AL~--~g~i~gAaLDV~~~EP~~~~--~pL~~~~nviiTPHia~ 314 (347)
T PLN02928 254 KGALLVNIARGGLLDYDAVLAALE--SGHLGGLAIDVAWSEPFDPD--DPILKHPNVIITPHVAG 314 (347)
T ss_pred CCeEEEECCCccccCHHHHHHHHH--cCCeeEEEEccCCCCCCCCC--ChhhcCCCEEECCcCCC
Confidence 577888777543321222223333 56644332111111111100 01124578999998874
No 82
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=91.47 E-value=0.61 Score=44.29 Aligned_cols=145 Identities=20% Similarity=0.201 Sum_probs=82.8
Q ss_pred HhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcC
Q 009519 313 AQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFM 392 (533)
Q Consensus 313 ~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~ 392 (533)
..+..+.. ++|.|+|.|..|..+|+++....+ +|+.+|+..- +.. .+....
T Consensus 29 ~~~~~l~g---~tvgIiG~G~IG~~vA~~l~~fG~------------~V~~~d~~~~---------~~~-~~~~~~---- 79 (178)
T PF02826_consen 29 FPGRELRG---KTVGIIGYGRIGRAVARRLKAFGM------------RVIGYDRSPK---------PEE-GADEFG---- 79 (178)
T ss_dssp TTBS-STT---SEEEEESTSHHHHHHHHHHHHTT-------------EEEEEESSCH---------HHH-HHHHTT----
T ss_pred CCccccCC---CEEEEEEEcCCcCeEeeeeecCCc------------eeEEecccCC---------hhh-hccccc----
Confidence 34555666 999999999999999999987644 7888988532 111 111110
Q ss_pred CccCCCCHHHHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEe
Q 009519 393 GLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFA 468 (533)
Q Consensus 393 ~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~A 468 (533)
....+|.|+++. .|+++=.- ..-+.|+++.++.|. +..++.-.|.-.---|..--+|++ +|+.--|
T Consensus 80 --~~~~~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk----~ga~lvN~aRG~~vde~aL~~aL~--~g~i~ga 149 (178)
T PF02826_consen 80 --VEYVSLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK----PGAVLVNVARGELVDEDALLDALE--SGKIAGA 149 (178)
T ss_dssp --EEESSHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST----TTEEEEESSSGGGB-HHHHHHHHH--TTSEEEE
T ss_pred --ceeeehhhhcch--hhhhhhhhccccccceeeeeeeeeccc----cceEEEeccchhhhhhhHHHHHHh--hccCceE
Confidence 023579999998 89987432 124899999999993 567877766644322222233333 5664433
Q ss_pred cCCCCcceecCCCeeeecccccceeechhh
Q 009519 469 SGSPFENVDLGNGKIGHVNQANNMYLFPGI 498 (533)
Q Consensus 469 tGSPf~pv~~~~G~~~~p~Q~NN~~iFPGi 498 (533)
.=--|++-..+.+ ..--+..|+++-|=+
T Consensus 150 ~lDV~~~EP~~~~--~~l~~~~nvi~TPH~ 177 (178)
T PF02826_consen 150 ALDVFEPEPLPAD--SPLWDLPNVILTPHI 177 (178)
T ss_dssp EESS-SSSSSSTT--HHHHTSTTEEEESS-
T ss_pred EEECCCCCCCCCC--ChHHcCCCEEEeCcc
Confidence 2112222111101 122456677777743
No 83
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=91.44 E-value=0.46 Score=48.96 Aligned_cols=127 Identities=19% Similarity=0.331 Sum_probs=77.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+|+|.+|..+|..|+. .|+. .+|+++|++-=...+- .+|.+.. .+....... ...+.+ .
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~~-----~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i----~~~~~~-~ 65 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGIA-----DELVLIDINEEKAEGEALDLEDAL-AFLPSPVKI----KAGDYS-D 65 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEE----EcCCHH-H
Confidence 89999999999999998764 3442 4799999842211111 1222111 111100000 112333 4
Q ss_pred hcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--CcEEE
Q 009519 404 VRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENIVF 467 (533)
Q Consensus 404 V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--Grai~ 467 (533)
+++ .|++|=+.+.+ |- +=+++.+.|.+ ++..-+|+-.|||.. +...-+++++. -+-+|
T Consensus 66 l~~--aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~-~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~ 139 (306)
T cd05291 66 CKD--ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKA-SGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVI 139 (306)
T ss_pred hCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEe
Confidence 665 89999776654 21 12566777754 889999999999995 66666766641 13588
Q ss_pred ecCCCC
Q 009519 468 ASGSPF 473 (533)
Q Consensus 468 AtGSPf 473 (533)
++|.-.
T Consensus 140 g~gt~L 145 (306)
T cd05291 140 GTGTSL 145 (306)
T ss_pred eccchH
Confidence 888664
No 84
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.22 E-value=1.3 Score=45.60 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=26.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|.++|..+... |. ++++.|+.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~-----G~-------~V~~~~r~ 36 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN-----GH-------RVRVWSRR 36 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------EEEEEeCC
Confidence 6899999999999999999765 42 57777764
No 85
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=91.20 E-value=0.35 Score=49.65 Aligned_cols=57 Identities=19% Similarity=0.380 Sum_probs=41.3
Q ss_pred CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 289 ~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+.-||-| ..|++.+++..+..++. ++++|+|||-+|.+||..+.. .|. ++|+++|+.
T Consensus 103 l~G~NTD--------~~G~~~~l~~~~~~~~~---k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 103 LTGHITD--------GLGFVRNLREHGVDVKG---KKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEecC--------HHHHHHHHHhcCCCcCC---CEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4556666 34578888876666777 899999999777777666654 454 579999874
No 86
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=91.01 E-value=0.85 Score=51.07 Aligned_cols=174 Identities=17% Similarity=0.260 Sum_probs=87.8
Q ss_pred hhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhccCceec--cCcchhHHHHH
Q 009519 227 QKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFN--DDIQGTAGVAL 304 (533)
Q Consensus 227 ~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~L 304 (533)
+.|..+-.|+|+=|+--. .|.++++.++- -.+|-+|.+-. . .|- .++.+|. .-|-|-.+|..
T Consensus 80 ~~l~~g~tli~~l~p~~n--------~~ll~~l~~k~-it~ia~E~vpr--i----sra-q~~d~lssma~iAGy~Avi~ 143 (511)
T TIGR00561 80 AELPAGKALVSFIWPAQN--------PELMEKLAAKN-ITVLAMDAVPR--I----SRA-QKLDALSSMANIAGYRAIIE 143 (511)
T ss_pred HhcCCCCEEEEEcCccCC--------HHHHHHHHHcC-CEEEEeecccc--c----ccC-CccCcchhhHHHHHHHHHHH
Confidence 345566677777765331 33333333322 13677775521 0 111 2234443 45666666666
Q ss_pred HHHHHHHHHhCC--CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChh--
Q 009519 305 AGLLGTVRAQGL--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA-- 380 (533)
Q Consensus 305 Agli~Alr~~g~--~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~-- 380 (533)
|+=.-.-..+|. .+......|++|+|+|.+|+..+..+..... +++++|.+.-....-..+...
T Consensus 144 Aa~~lgr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lGA------------~V~v~d~~~~rle~a~~lGa~~v 211 (511)
T TIGR00561 144 AAHEFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLGA------------IVRAFDTRPEVKEQVQSMGAEFL 211 (511)
T ss_pred HHHHhhhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCCC------------EEEEEeCCHHHHHHHHHcCCeEE
Confidence 643333222221 1111222799999999999998887766422 477777754311000001000
Q ss_pred ----------hhccccccCC-cCCccCCCCHHHHhcccCCcEEEEeccCCC-----CCCHHHHHHhh
Q 009519 381 ----------AAPFAKDPGD-FMGLREGASLLEVVRKVKPHVLLGLSGVGG-----VFNEEVLKAMR 431 (533)
Q Consensus 381 ----------k~~~A~~~~~-~~~~~~~~~L~e~V~~vkptvLIG~S~~~g-----~Fteevv~~Ma 431 (533)
..-||+...+ .. ..+..-+.|.++. .|++|++.-++| ++|+++++.|.
T Consensus 212 ~v~~~e~g~~~~gYa~~~s~~~~-~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MK 275 (511)
T TIGR00561 212 ELDFKEEGGSGDGYAKVMSEEFI-AAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMK 275 (511)
T ss_pred eccccccccccccceeecCHHHH-HHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCC
Confidence 0012211100 00 0011125566666 899999984444 59999999994
No 87
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.97 E-value=0.21 Score=52.56 Aligned_cols=110 Identities=15% Similarity=0.103 Sum_probs=69.3
Q ss_pred HHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---cccC-----CHHHHhcccCCcEEEecCCC
Q 009519 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NAEC-----TAADAFKHAGENIVFASGSP 472 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~---~aE~-----tpe~A~~wt~Grai~AtGSP 472 (533)
.++-+..+|+++|..||. +.-..++-+.+. +-+|=|+.=.-||.. +.|+ |.++++++.. . |+..-=
T Consensus 103 ~~l~~~~~~~aIlaSnTS-~l~~s~la~~~~--~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~--~-f~~~lG 176 (321)
T PRK07066 103 ERISRAAKPDAIIASSTS-GLLPTDFYARAT--HPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAM--G-IYRALG 176 (321)
T ss_pred HHHHHhCCCCeEEEECCC-ccCHHHHHHhcC--CcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHH--H-HHHHcC
Confidence 344566789999998885 666666666552 556778888899963 5454 4445544321 1 122122
Q ss_pred CcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHH
Q 009519 473 FENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAA 519 (533)
Q Consensus 473 f~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA 519 (533)
..||.. +...||-.=|-+.+|-+-=+.-+..--..|.+-+-+|-
T Consensus 177 k~pV~v---~kd~pGFi~NRl~~a~~~EA~~lv~eGvas~edID~a~ 220 (321)
T PRK07066 177 MRPLHV---RKEVPGFIADRLLEALWREALHLVNEGVATTGEIDDAI 220 (321)
T ss_pred CEeEec---CCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 446655 34788888888888887777766665555666555553
No 88
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.96 E-value=0.63 Score=48.86 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=++-.|.+++. ++|+|+|.| ..|..+|.+|... |. .+.+++++
T Consensus 139 ~PcTp~aii~lL~~~~i~l~G---k~V~vIG~s~ivG~PmA~~L~~~-----ga-------tVtv~~~~----------- 192 (301)
T PRK14194 139 TPCTPSGCLRLLEDTCGDLTG---KHAVVIGRSNIVGKPMAALLLQA-----HC-------SVTVVHSR----------- 192 (301)
T ss_pred CCCcHHHHHHHHHHhCCCCCC---CEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEECCC-----------
Confidence 345778888888999998888 999999996 9999999999764 42 57777643
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC-CC
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS-NP 446 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS-NP 446 (533)
..++.|++++ +|++|=.-+.++.+++++++ +.-||.=.| |+
T Consensus 193 ------------------t~~l~e~~~~--ADIVIsavg~~~~v~~~~ik-------~GaiVIDvgin~ 234 (301)
T PRK14194 193 ------------------STDAKALCRQ--ADIVVAAVGRPRLIDADWLK-------PGAVVIDVGINR 234 (301)
T ss_pred ------------------CCCHHHHHhc--CCEEEEecCChhcccHhhcc-------CCcEEEEecccc
Confidence 0248888988 89999888889999998844 566887777 44
No 89
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.95 E-value=0.52 Score=47.80 Aligned_cols=32 Identities=38% Similarity=0.533 Sum_probs=26.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G~-------~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----GF-------QTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----CC-------cEEEEeCC
Confidence 5899999999999999988764 42 68888874
No 90
>PRK15076 alpha-galactosidase; Provisional
Probab=90.86 E-value=0.31 Score=53.14 Aligned_cols=133 Identities=16% Similarity=0.116 Sum_probs=75.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC-CCh-hhhccccccCCcCCccCCCCHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN-LDP-AAAPFAKDPGDFMGLREGASLL 401 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~-l~~-~k~~~A~~~~~~~~~~~~~~L~ 401 (533)
.||.|+|||+.|...+ ++..+....++. -..++|+|.+- +|.. ... .+..++.....+. .....++.
T Consensus 2 ~KIaIIGaGsvg~~~~--~~~~i~~~~~l~----~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~-i~~ttD~~ 70 (431)
T PRK15076 2 PKITFIGAGSTVFTKN--LLGDILSVPALR----DAEIALMDIDP----ERLEESEIVARKLAESLGASAK-ITATTDRR 70 (431)
T ss_pred cEEEEECCCHHHhHHH--HHHHHhhCccCC----CCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeE-EEEECCHH
Confidence 5899999999854443 322222122332 24799999742 1100 000 0111111111110 01246788
Q ss_pred HHhcccCCcEEEEeccCCCC-------------------------------------CCHHHHHHhhhcCCCCCeEEecC
Q 009519 402 EVVRKVKPHVLLGLSGVGGV-------------------------------------FNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~-------------------------------------Fteevv~~Ma~~~~erPIIFaLS 444 (533)
+++++ +|++|=..+++|. .=.|+++.|. ++++..+|+-.|
T Consensus 71 eal~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~-~~~p~a~iin~t 147 (431)
T PRK15076 71 EALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDME-EVCPDALLLNYV 147 (431)
T ss_pred HHhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHH-HHCCCeEEEEcC
Confidence 99988 7887744444321 1246777774 489999999999
Q ss_pred CCCCcccCCHHHHhcccCCcEEEecC-CCCc
Q 009519 445 NPTMNAECTAADAFKHAGENIVFASG-SPFE 474 (533)
Q Consensus 445 NPt~~aE~tpe~A~~wt~Grai~AtG-SPf~ 474 (533)
||.. +..+-++.++. ..+|.+| +|+.
T Consensus 148 NP~d---ivt~~~~~~~~-~rviG~c~~~~~ 174 (431)
T PRK15076 148 NPMA---MNTWAMNRYPG-IKTVGLCHSVQG 174 (431)
T ss_pred ChHH---HHHHHHhcCCC-CCEEEECCCHHH
Confidence 9995 44445556653 4588888 7755
No 91
>PRK08374 homoserine dehydrogenase; Provisional
Probab=90.83 E-value=1.6 Score=46.10 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=66.1
Q ss_pred ceEEEeCchhHHHHHHHHHHH---HHHHHcCCChhhhcCeEEEEeccCccccCCC-CCC---hhhhccccccCCcCC--c
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQ---AAARMAGNNDAFARNKFFLLDKDGLITKERK-NLD---PAAAPFAKDPGDFMG--L 394 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~---~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~-~l~---~~k~~~A~~~~~~~~--~ 394 (533)
.+|.++|.|..|.+++++|.+ .+.++.|... +=+-++|++|.+...+. +++ ++++.+.... .+.. .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l----~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~-~~~~~~~ 77 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVEL----KVVSITDTSGTIWLPEDIDLREAKEVKENFGKLS-NWGNDYE 77 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCccccCCCCCChHHHHHhhhccCchh-hcccccc
Confidence 689999999999999999977 3333456432 23556799998876552 222 2222222110 0100 0
Q ss_pred cCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEE
Q 009519 395 REGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (533)
Q Consensus 395 ~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIF 441 (533)
....++.|.++...+||+|-+++ +....+-+.+.+. +..++|.
T Consensus 78 ~~~~~~~ell~~~~~DVvVd~t~-~~~a~~~~~~al~---~G~~VVt 120 (336)
T PRK08374 78 VYNFSPEEIVEEIDADIVVDVTN-DKNAHEWHLEALK---EGKSVVT 120 (336)
T ss_pred ccCCCHHHHHhcCCCCEEEECCC-cHHHHHHHHHHHh---hCCcEEE
Confidence 01137889998778999999985 3444444444443 5778885
No 92
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=90.69 E-value=0.78 Score=46.20 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=58.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCC--cCCccCCCCHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FMGLREGASLLE 402 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~--~~~~~~~~~L~e 402 (533)
||.|+|+|+.|..+|..|.+. | .+++++++ +--.+ .+.......-....+ .. .....+..+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r-~~~~~---~~~~~g~~~~~~~~~~~~~-~~~~~~~~~ 64 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVR-PKRAK---ALRERGLVIRSDHGDAVVP-GPVITDPEE 64 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEec-HHHHH---HHHhCCeEEEeCCCeEEec-ceeecCHHH
Confidence 799999999999999998764 3 36888877 21100 010000000000000 00 001234666
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+++. +|++|=+. +....+++++.++....++.+|+.+.|.-.
T Consensus 65 ~~~~--~d~vilav--k~~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 65 LTGP--FDLVILAV--KAYQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred ccCC--CCEEEEEe--cccCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 6555 78665332 233578999988654556678888999864
No 93
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.49 E-value=0.57 Score=48.66 Aligned_cols=92 Identities=16% Similarity=0.330 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=++..+-+++. .+++|+|-+ .-|.-+|.++... | ..+..++++
T Consensus 132 ~PcTp~av~~ll~~~~i~l~G---k~V~ViGrs~~vGrpla~lL~~~-----~-------atVtv~hs~----------- 185 (279)
T PRK14178 132 APCTPNGIMTLLHEYKISIAG---KRAVVVGRSIDVGRPMAALLLNA-----D-------ATVTICHSK----------- 185 (279)
T ss_pred CCCCHHHHHHHHHHcCCCCCC---CEEEEECCCccccHHHHHHHHhC-----C-------CeeEEEecC-----------
Confidence 456778888888899998888 999999998 8888888888653 2 256667652
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
..+|.+.+++ +|++|+.-+.++.+|+++|+ +.-+|.=.+
T Consensus 186 ------------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk-------~GavVIDVg 224 (279)
T PRK14178 186 ------------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK-------PGATVIDVG 224 (279)
T ss_pred ------------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC-------CCcEEEEee
Confidence 0248888988 99999999999999999984 456776554
No 94
>PRK05086 malate dehydrogenase; Provisional
Probab=90.34 E-value=1.3 Score=46.28 Aligned_cols=131 Identities=19% Similarity=0.255 Sum_probs=76.7
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHH
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLL 401 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~ 401 (533)
.||+|+|| |..|..+|.+|... .+.- ..+.++|++-. ..+. -++.+. +......+ ....++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~~-----~el~L~d~~~~-~~g~alDl~~~-----~~~~~i~~-~~~~d~~ 64 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPAG-----SELSLYDIAPV-TPGVAVDLSHI-----PTAVKIKG-FSGEDPT 64 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCCc-----cEEEEEecCCC-CcceehhhhcC-----CCCceEEE-eCCCCHH
Confidence 38999999 99999999887542 1221 46889997522 1110 022210 10000000 0124678
Q ss_pred HHhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC-cccCCHHHHhccc--CCc
Q 009519 402 EVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADAFKHA--GEN 464 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~-~aE~tpe~A~~wt--~Gr 464 (533)
+++++ .|++|=+.+.+ |. ..+++++.|.+ ++.+.+|+-.|||.. .+=...+.+++++ ...
T Consensus 65 ~~l~~--~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~-~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~ 141 (312)
T PRK05086 65 PALEG--ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAK-TCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKN 141 (312)
T ss_pred HHcCC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHH
Confidence 88888 89888555542 31 56789999965 899999999999994 0001122233442 234
Q ss_pred EEEecCCCCc
Q 009519 465 IVFASGSPFE 474 (533)
Q Consensus 465 ai~AtGSPf~ 474 (533)
-+|++|. .+
T Consensus 142 rvig~~~-Ld 150 (312)
T PRK05086 142 KLFGVTT-LD 150 (312)
T ss_pred HEEeeec-HH
Confidence 5778875 44
No 95
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=90.33 E-value=0.49 Score=48.09 Aligned_cols=49 Identities=20% Similarity=0.481 Sum_probs=37.3
Q ss_pred HHHHHHHHH-hCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 305 AGLLGTVRA-QGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 305 Agli~Alr~-~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.|++++++. .+..++. .+++|+|||.+|.+++..|... |. .+|+++++.
T Consensus 107 ~G~~~~l~~~~~~~~~~---k~vlVlGaGg~a~ai~~aL~~~-----g~------~~V~v~~R~ 156 (278)
T PRK00258 107 IGFVRALEERLGVDLKG---KRILILGAGGAARAVILPLLDL-----GV------AEITIVNRT 156 (278)
T ss_pred HHHHHHHHhccCCCCCC---CEEEEEcCcHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 457777764 4666777 9999999999988888887743 43 479999884
No 96
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=90.28 E-value=0.46 Score=49.31 Aligned_cols=47 Identities=23% Similarity=0.522 Sum_probs=37.5
Q ss_pred HHHHHHHHhC--CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 306 GLLGTVRAQG--LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 306 gli~Alr~~g--~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
|+..+|+-.+ ...+. ++++++|||-|+.+|+-.|.++.+ ++|+++++
T Consensus 110 G~~~~L~~~~~~~~~~~---~~vlilGAGGAarAv~~aL~~~g~-----------~~i~V~NR 158 (283)
T COG0169 110 GFLRALKEFGLPVDVTG---KRVLILGAGGAARAVAFALAEAGA-----------KRITVVNR 158 (283)
T ss_pred HHHHHHHhcCCCcccCC---CEEEEECCcHHHHHHHHHHHHcCC-----------CEEEEEeC
Confidence 4778888755 34445 899999999999999988887643 68999988
No 97
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.12 E-value=0.82 Score=47.58 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l 377 (533)
=.-+|-+|++.=++-.+.+++. +++||+|.+ ..|.-+|.||... |. .+.+|+++
T Consensus 136 ~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~~VG~Pla~lL~~~-----~A-------tVti~hs~---------- 190 (281)
T PRK14183 136 FVPCTPLGVMELLEEYEIDVKG---KDVCVVGASNIVGKPMAALLLNA-----NA-------TVDICHIF---------- 190 (281)
T ss_pred CCCCcHHHHHHHHHHcCCCCCC---CEEEEECCCCcchHHHHHHHHHC-----CC-------EEEEeCCC----------
Confidence 3456778888888999998888 999999998 8899999988642 32 35555442
Q ss_pred ChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 378 ~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 191 -------------------T~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 191 -------------------TKDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred -------------------CcCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 1237777888 99999999999999999998
No 98
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.12 E-value=0.83 Score=47.58 Aligned_cols=83 Identities=16% Similarity=0.298 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.-++-.+.+++. ++++|+|.+ ..|.-+|.||.. +| ..+.+|+++
T Consensus 138 ~PcTp~av~~lL~~~~i~l~G---k~vvViGrS~iVG~Pla~lL~~-----~~-------atVt~chs~----------- 191 (284)
T PRK14190 138 LPCTPHGILELLKEYNIDISG---KHVVVVGRSNIVGKPVGQLLLN-----EN-------ATVTYCHSK----------- 191 (284)
T ss_pred CCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHH-----CC-------CEEEEEeCC-----------
Confidence 456778888889999999888 999999975 678888888864 23 246667541
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|...+.++.|++++|+
T Consensus 192 ------------------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ------------------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ------------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1348888988 99999999999999999996
No 99
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=90.11 E-value=1.2 Score=42.60 Aligned_cols=83 Identities=17% Similarity=0.331 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh
Q 009519 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (533)
Q Consensus 301 aV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~ 379 (533)
-+|-.|++.-++..+-+++. .+++++|.+ ..|.-+|.||... |. .+.+++++
T Consensus 17 PcTp~aii~lL~~~~~~l~G---k~v~VvGrs~~VG~Pla~lL~~~-----~a-------tVt~~h~~------------ 69 (160)
T PF02882_consen 17 PCTPLAIIELLEYYGIDLEG---KKVVVVGRSNIVGKPLAMLLLNK-----GA-------TVTICHSK------------ 69 (160)
T ss_dssp -HHHHHHHHHHHHTT-STTT----EEEEE-TTTTTHHHHHHHHHHT-----T--------EEEEE-TT------------
T ss_pred CCCHHHHHHHHHhcCCCCCC---CEEEEECCcCCCChHHHHHHHhC-----CC-------eEEeccCC------------
Confidence 45777888888888888888 999999998 4888888888763 22 35555553
Q ss_pred hhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHH
Q 009519 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (533)
Q Consensus 380 ~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~ 429 (533)
..+|.+.+++ +|++|-..++++.++.++||.
T Consensus 70 -----------------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik~ 100 (160)
T PF02882_consen 70 -----------------TKNLQEITRR--ADIVVSAVGKPNLIKADWIKP 100 (160)
T ss_dssp -----------------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-T
T ss_pred -----------------CCcccceeee--ccEEeeeeccccccccccccC
Confidence 1247777877 999999999999999998873
No 100
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=90.02 E-value=0.51 Score=51.11 Aligned_cols=130 Identities=12% Similarity=0.118 Sum_probs=73.0
Q ss_pred eEEEeCchhHHHHHHH--HHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccc-cCCcCCccCCCCHH
Q 009519 325 KIVVVGAGSAGLGVLK--MAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDFMGLREGASLL 401 (533)
Q Consensus 325 riv~~GAGsAg~GiA~--ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~-~~~~~~~~~~~~L~ 401 (533)
||.|+|||+.|.+.+- .|+.. ..+ +-.+++++|.+-=..+ .+...-..++.. ..... .....++.
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~----~~~----~g~eV~L~Did~e~l~---~~~~~~~~~~~~~~~~~~-I~~ttD~~ 69 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKT----PEL----SGSTIALMDIDEERLE---TVEILAKKIVEELGAPLK-IEATTDRR 69 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcC----CCC----CCCEEEEECCCHHHHH---HHHHHHHHHHHhcCCCeE-EEEeCCHH
Confidence 7999999999888653 22211 111 1247999997421100 010000111111 00000 01246799
Q ss_pred HHhcccCCcEEEEeccCC---------------CCCC---------------------HHHHHHhhhcCCCCCeEEecCC
Q 009519 402 EVVRKVKPHVLLGLSGVG---------------GVFN---------------------EEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~---------------g~Ft---------------------eevv~~Ma~~~~erPIIFaLSN 445 (533)
+++++ +|++|=.-..+ |+|. .++.+.|. +++++.+++=.||
T Consensus 70 eal~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~-~~~p~a~~i~~tN 146 (423)
T cd05297 70 EALDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIE-ELCPDAWLLNYAN 146 (423)
T ss_pred HHhcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHH-HHCCCCEEEEcCC
Confidence 99988 88877433211 1221 26666664 3778999999999
Q ss_pred CCCcccCCHHHHhcccCCcEEEecC-CCC
Q 009519 446 PTMNAECTAADAFKHAGENIVFASG-SPF 473 (533)
Q Consensus 446 Pt~~aE~tpe~A~~wt~Grai~AtG-SPf 473 (533)
|.. +..+-+++.++ .-++.+| +|+
T Consensus 147 Pv~---i~t~~~~k~~~-~rviG~c~~~~ 171 (423)
T cd05297 147 PMA---ELTWALNRYTP-IKTVGLCHGVQ 171 (423)
T ss_pred hHH---HHHHHHHHhCC-CCEEEECCcHH
Confidence 997 55556667776 5678887 443
No 101
>PLN03139 formate dehydrogenase; Provisional
Probab=89.94 E-value=7.2 Score=42.29 Aligned_cols=227 Identities=15% Similarity=0.055 Sum_probs=127.0
Q ss_pred HhCCCc-eeeeecCCCchHHHHHHHHhccCceeccCcc---hhHHHHHHHHHHHHHHh---------C--------CCCC
Q 009519 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDIQ---GTAGVALAGLLGTVRAQ---------G--------LSLT 319 (533)
Q Consensus 261 ~~~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQ---GTaaV~LAgli~Alr~~---------g--------~~l~ 319 (533)
...|+. +|+.--.+..| ..+..--+..++|.|=--- -.|=-+++-+|+.+|-. | ..-.
T Consensus 117 ~~ap~LK~I~~~g~G~D~-iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~ 195 (386)
T PLN03139 117 KKAKNLELLLTAGIGSDH-IDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAY 195 (386)
T ss_pred hhCCCccEEEECCccccc-cCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCc
Confidence 346776 77777777665 3333333345888885322 34445677888777732 1 0113
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+|.+.+|.|+|.|..|..+|+.+... |+ +++.+|+... .. ...+..-+ ....+
T Consensus 196 ~L~gktVGIVG~G~IG~~vA~~L~af-----G~-------~V~~~d~~~~----~~--~~~~~~g~---------~~~~~ 248 (386)
T PLN03139 196 DLEGKTVGTVGAGRIGRLLLQRLKPF-----NC-------NLLYHDRLKM----DP--ELEKETGA---------KFEED 248 (386)
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHHC-----CC-------EEEEECCCCc----ch--hhHhhcCc---------eecCC
Confidence 45569999999999999999999764 33 5777887532 00 00000000 01247
Q ss_pred HHHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcc
Q 009519 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 475 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~p 475 (533)
|.|+++. .|+++=..- .-++|+++.+..|. +.-+++=.|.=.---|-.-.+|.+ .|+.-.|..-=|.+
T Consensus 249 l~ell~~--sDvV~l~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aRG~iVDe~AL~~AL~--sG~l~GAaLDV~~~ 320 (386)
T PLN03139 249 LDAMLPK--CDVVVINTPLTEKTRGMFNKERIAKMK----KGVLIVNNARGAIMDTQAVADACS--SGHIGGYGGDVWYP 320 (386)
T ss_pred HHHHHhh--CCEEEEeCCCCHHHHHHhCHHHHhhCC----CCeEEEECCCCchhhHHHHHHHHH--cCCceEEEEcCCCC
Confidence 9999988 898773321 12789999999993 566777666533311222223333 66655555443333
Q ss_pred eecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCCC
Q 009519 476 VDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 476 v~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~~ 530 (533)
-..+ ....--+..|+.+-|=++-....++ ..|...+++-|-.....++
T Consensus 321 EPlp--~d~pL~~~pNvilTPHiag~t~~~~-----~r~~~~~~~nl~~~~~G~~ 368 (386)
T PLN03139 321 QPAP--KDHPWRYMPNHAMTPHISGTTIDAQ-----LRYAAGVKDMLDRYFKGED 368 (386)
T ss_pred CCCC--CCChhhcCCCeEEcccccccCHHHH-----HHHHHHHHHHHHHHHcCCC
Confidence 2221 1111123569999998874333322 2334444454544444443
No 102
>PRK08605 D-lactate dehydrogenase; Validated
Probab=89.48 E-value=2.7 Score=44.19 Aligned_cols=167 Identities=17% Similarity=0.190 Sum_probs=92.6
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+|..++|.|+|.|..|..+|+.+... .|+ ++|.+|+.. . .....++. ...+
T Consensus 143 ~l~g~~VgIIG~G~IG~~vA~~L~~~----~g~-------~V~~~d~~~----~-----~~~~~~~~---------~~~~ 193 (332)
T PRK08605 143 SIKDLKVAVIGTGRIGLAVAKIFAKG----YGS-------DVVAYDPFP----N-----AKAATYVD---------YKDT 193 (332)
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHhc----CCC-------EEEEECCCc----c-----HhHHhhcc---------ccCC
Confidence 35559999999999999999999532 243 688888642 0 00111111 1247
Q ss_pred HHHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCC--
Q 009519 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPF-- 473 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf-- 473 (533)
|.|+++. .|+++=.-- ..++|+++.++.|. +..++.=.|.=...-|..-.+|.+ .|+.-.|.=-=|
T Consensus 194 l~ell~~--aDvIvl~lP~t~~t~~li~~~~l~~mk----~gailIN~sRG~~vd~~aL~~aL~--~g~i~gaalDV~~~ 265 (332)
T PRK08605 194 IEEAVEG--ADIVTLHMPATKYNHYLFNADLFKHFK----KGAVFVNCARGSLVDTKALLDALD--NGLIKGAALDTYEF 265 (332)
T ss_pred HHHHHHh--CCEEEEeCCCCcchhhhcCHHHHhcCC----CCcEEEECCCCcccCHHHHHHHHH--hCCeeEEEEecccC
Confidence 9999988 899884421 23678888888883 577888777643322222233333 455322211111
Q ss_pred -cceecCC--Cee--e----ecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCC
Q 009519 474 -ENVDLGN--GKI--G----HVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCN 528 (533)
Q Consensus 474 -~pv~~~~--G~~--~----~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~ 528 (533)
||+--.+ ++. . .--+..|+.+=|=+|-....+ -..|...+++.+-+....
T Consensus 266 Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~-----~~~~~~~~~~n~~~~~~g 324 (332)
T PRK08605 266 ERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAA-----VKNLIVDALDATLEVLQT 324 (332)
T ss_pred CCCccccccccccccchhhHHHhcCCCEEECCcccccHHHH-----HHHHHHHHHHHHHHHHcC
Confidence 1110000 000 0 012457899999888544333 345666666666555443
No 103
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=89.28 E-value=2.6 Score=43.30 Aligned_cols=95 Identities=17% Similarity=0.290 Sum_probs=60.8
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
||-|+|.|..|..+|..|.+. |. ++.+.|++ . +... .++.... ....++.|++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g~-------~V~~~dr~----~--~~~~----~l~~~g~-----~~~~s~~~~~ 54 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----GH-------DCVGYDHD----Q--DAVK----AMKEDRT-----TGVANLRELS 54 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----CC-------EEEEEECC----H--HHHH----HHHHcCC-----cccCCHHHHH
Confidence 699999999999999988753 42 56667752 1 1111 1221110 1124566655
Q ss_pred ccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 405 RKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 405 ~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+.. ++|++|=+ ...+ ..+++++.+++...+..||+-+||..+
T Consensus 55 ~~~~~~dvIi~~-vp~~-~~~~v~~~l~~~l~~g~ivid~st~~~ 97 (298)
T TIGR00872 55 QRLSAPRVVWVM-VPHG-IVDAVLEELAPTLEKGDIVIDGGNSYY 97 (298)
T ss_pred hhcCCCCEEEEE-cCch-HHHHHHHHHHhhCCCCCEEEECCCCCc
Confidence 432 48888743 3345 889999988764567789999999765
No 104
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=89.26 E-value=2.7 Score=45.39 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l 377 (533)
..|=-+++.+++..|..|..|.+ .++.|+|.|..|..+|+.+... |+ ++..+|.. +..
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~g---ktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~- 151 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHD---RTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD- 151 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCC---CEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc-
Confidence 45555788888888888877777 9999999999999999999765 43 68888852 110
Q ss_pred ChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEE---ecc-----CCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLG---LSG-----VGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 378 ~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG---~S~-----~~g~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
. ... ....+|.|+++. .|+++= ++. .-+.|+++.++.|. +..|++=.|.
T Consensus 152 ~-------~~~------~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk----~gailIN~aR 208 (378)
T PRK15438 152 R-------GDE------GDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK----PGAILINACR 208 (378)
T ss_pred c-------ccc------cccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC----CCcEEEECCC
Confidence 0 000 012468888877 788771 111 23788888888883 5778776664
No 105
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=89.17 E-value=1.6 Score=44.77 Aligned_cols=96 Identities=18% Similarity=0.274 Sum_probs=58.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
||.|+|.|..|..+|..|... |. +++++|+.. +....++.... ....++.|++
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-----g~-------~v~v~dr~~----------~~~~~~~~~g~-----~~~~~~~e~~ 54 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-----GH-------EVVGYDRNP----------EAVEALAEEGA-----TGADSLEELV 54 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-----CC-------eEEEEECCH----------HHHHHHHHCCC-----eecCCHHHHH
Confidence 799999999999999999763 42 577777741 11112221110 1234677777
Q ss_pred ccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 405 RKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 405 ~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+.. ++|++|=+- ..+...++++..+.+...+..||+-+|+-.+
T Consensus 55 ~~~~~~dvvi~~v-~~~~~~~~v~~~l~~~l~~g~ivid~st~~~ 98 (301)
T PRK09599 55 AKLPAPRVVWLMV-PAGEITDATIDELAPLLSPGDIVIDGGNSYY 98 (301)
T ss_pred hhcCCCCEEEEEe-cCCcHHHHHHHHHHhhCCCCCEEEeCCCCCh
Confidence 765 367655332 2344666676655443456778888877554
No 106
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.99 E-value=1.1 Score=46.80 Aligned_cols=92 Identities=21% Similarity=0.321 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-+|++.=++..+-+++. .+++|+|. |..|.-+|.+|... |. .+.++.++
T Consensus 138 ~PcTp~avi~lL~~~~i~l~G---k~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s~----------- 191 (284)
T PRK14179 138 IPCTPAGIMEMFREYNVELEG---KHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHSR----------- 191 (284)
T ss_pred cCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECCC-----------
Confidence 456777888888889998888 99999999 99999999999763 43 34444221
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
..+|.+++++ +|++|-.-+.++.+++++++ +..+|.=.+
T Consensus 192 ------------------t~~l~~~~~~--ADIVI~avg~~~~v~~~~ik-------~GavVIDvg 230 (284)
T PRK14179 192 ------------------TRNLAEVARK--ADILVVAIGRGHFVTKEFVK-------EGAVVIDVG 230 (284)
T ss_pred ------------------CCCHHHHHhh--CCEEEEecCccccCCHHHcc-------CCcEEEEec
Confidence 1248888988 99999999999999998754 456776555
No 107
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=88.92 E-value=9.1 Score=42.02 Aligned_cols=199 Identities=19% Similarity=0.164 Sum_probs=129.1
Q ss_pred cCCChhhhhHhHHHHHHHHHHhC-CCceeeeecCCCc--hHHHHHHHHhccC-----cee------c----cCcchhHHH
Q 009519 241 PRLEGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQMK--WAFETLERYRKRF-----CMF------N----DDIQGTAGV 302 (533)
Q Consensus 241 ~R~~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~~~--~af~iL~ryr~~~-----~~F------n----DDiQGTaaV 302 (533)
+..+..|-.+|...|++++.+.- |+.-|-=+|++.. .---+.+.|+.-. +|| . +----||-=
T Consensus 110 k~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~G 189 (411)
T COG0334 110 KGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYG 189 (411)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCccccee
Confidence 44778899999999999999888 8899999999863 2233567776432 111 1 222223332
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhh
Q 009519 303 ALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA 382 (533)
Q Consensus 303 ~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~ 382 (533)
+.-+.-.|++..|.+|+. .||.|-|.|.+|.-.|+.+.+.+. |=+-+=|++|.|++. +.|+..+.
T Consensus 190 v~~~~~~a~~~~g~~l~G---~rVaVQG~GNVg~~aa~~l~~~GA-----------kvva~sds~g~i~~~-~Gld~~~l 254 (411)
T COG0334 190 VFYAIREALKALGDDLEG---ARVAVQGFGNVGQYAAEKLHELGA-----------KVVAVSDSKGGIYDE-DGLDVEAL 254 (411)
T ss_pred hHHHHHHHHHHcCCCcCC---CEEEEECccHHHHHHHHHHHHcCC-----------EEEEEEcCCCceecC-CCCCHHHH
Confidence 233333777788887888 999999999999999999876433 457778999988886 34553332
Q ss_pred c-----cccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCHHH
Q 009519 383 P-----FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAAD 456 (533)
Q Consensus 383 ~-----~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpe~ 456 (533)
. +.+-... .+ ....+= |.+-.+..||||=+.. .+.+|++-++.+.+ + +|.=-+| |+. ..+++
T Consensus 255 ~~~~~~~~~v~~~-~g-a~~i~~-~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a---k--~V~EgAN~P~t---~eA~~ 322 (411)
T COG0334 255 LELKERRGSVAEY-AG-AEYITN-EELLEVDCDILIPCAL-ENVITEDNADQLKA---K--IVVEGANGPTT---PEADE 322 (411)
T ss_pred HHHhhhhhhHHhh-cC-ceEccc-cccccccCcEEccccc-ccccchhhHHHhhh---c--EEEeccCCCCC---HHHHH
Confidence 2 1111100 00 001111 2333467899997765 79999999999853 2 8888888 775 45556
Q ss_pred HhcccCCcEEEe
Q 009519 457 AFKHAGENIVFA 468 (533)
Q Consensus 457 A~~wt~Grai~A 468 (533)
.+. ..| ++|+
T Consensus 323 i~~-erG-Il~~ 332 (411)
T COG0334 323 ILL-ERG-ILVV 332 (411)
T ss_pred HHH-HCC-CEEc
Confidence 655 334 4443
No 108
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.76 E-value=2.1 Score=45.04 Aligned_cols=120 Identities=19% Similarity=0.188 Sum_probs=74.9
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc--cccC-CCCCChhhhccccccCCcCCccCCCCH
Q 009519 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKE-RKNLDPAAAPFAKDPGDFMGLREGASL 400 (533)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL--i~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~L 400 (533)
||.|.|| |..|..+|..|+. .|+-.++-...+.|+|.+.- ..++ .-+|.+...++.+.. . ...+.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~-~-----i~~~~ 70 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGV-V-----ITTDP 70 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCc-E-----EecCh
Confidence 8999999 9999999987764 34432222337999998642 1111 123444332332211 1 12457
Q ss_pred HHHhcccCCcEEEEeccC---CCC-----------CCHHHHHHhhhcC-CCCCeEEecCCCCCcccCCHHHHhccc
Q 009519 401 LEVVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESD-SVKPAIFAMSNPTMNAECTAADAFKHA 461 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~---~g~-----------Fteevv~~Ma~~~-~erPIIFaLSNPt~~aE~tpe~A~~wt 461 (533)
.+++++ .|++|=+.+. +|- +-+++++.|++ + ++.-||+-.|||.. +..--+++++
T Consensus 71 ~~~~~~--aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~-~~~~~~iiivvsNPvD---~~t~~~~k~s 140 (323)
T cd00704 71 EEAFKD--VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNK-VAKPTVKVLVVGNPAN---TNALIALKNA 140 (323)
T ss_pred HHHhCC--CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHH-hCCCCeEEEEeCCcHH---HHHHHHHHHc
Confidence 888988 8988844443 332 23567777754 7 48999999999984 6666677765
No 109
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=88.72 E-value=0.98 Score=45.83 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=59.2
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChh--hhccccccCCcC-CccCCCCHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA--AAPFAKDPGDFM-GLREGASLL 401 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~--k~~~A~~~~~~~-~~~~~~~L~ 401 (533)
||.|+|+|..|..+|..|.+. | .+++++|+..-..+ .+... ...+... ..+. +.....++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 66 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAA---EINADRENPRYLPG-IKLPDNLRATTDLA 66 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHH---HHHHcCcccccCCC-CcCCCCeEEeCCHH
Confidence 799999999999999998763 3 25778887431110 00000 0000000 0000 001124677
Q ss_pred HHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++++. +|++| ++. +....+++++.+++...+..+|..++|-..
T Consensus 67 ~~~~~--~D~vi-~~v-~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 67 EALAD--ADLIL-VAV-PSQALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred HHHhC--CCEEE-EeC-CHHHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 88876 78766 333 234678888877643355678888887443
No 110
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.35 E-value=1.1 Score=46.65 Aligned_cols=96 Identities=20% Similarity=0.232 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-+|++.=++..+-+++. +++||+|.+ ..|.-+|.||..... ..| ..+..|+++.
T Consensus 137 ~PcTp~av~~lL~~~~i~l~G---k~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~t---------- 195 (286)
T PRK14184 137 RPCTPAGVMTLLERYGLSPAG---KKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSRT---------- 195 (286)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCCc----------
Confidence 456778888889999998888 999999975 578888888864210 012 2466665421
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
.+|.+.+++ +|++|+.-+.|+.|++++|+ +.-+|.-.+
T Consensus 196 -------------------~~l~~~~~~--ADIVI~AvG~p~li~~~~vk-------~GavVIDVG 233 (286)
T PRK14184 196 -------------------PDLAEECRE--ADFLFVAIGRPRFVTADMVK-------PGAVVVDVG 233 (286)
T ss_pred -------------------hhHHHHHHh--CCEEEEecCCCCcCCHHHcC-------CCCEEEEee
Confidence 248888988 99999999999999999995 445665443
No 111
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=88.34 E-value=0.78 Score=47.12 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=40.6
Q ss_pred CceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 289 FCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 289 ~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+.=||=|-. |++.+++..+.+. . .+++++|||-|+.+|+-.|.+. |. ++|+++++.
T Consensus 100 l~G~NTD~~--------Gf~~~L~~~~~~~-~---~~vlilGaGGaarAi~~aL~~~-----g~------~~i~i~nR~ 155 (272)
T PRK12550 100 LKAYNTDYI--------AIAKLLASYQVPP-D---LVVALRGSGGMAKAVAAALRDA-----GF------TDGTIVARN 155 (272)
T ss_pred EEEEecCHH--------HHHHHHHhcCCCC-C---CeEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEeCC
Confidence 444555544 4778887666543 4 5999999999999998887654 44 579999873
No 112
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=88.14 E-value=2 Score=43.99 Aligned_cols=96 Identities=21% Similarity=0.189 Sum_probs=58.4
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
||.|+|.|..|..+|+.|... |. +++++|++. ++ . ..++.... ....+++|++
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~-----g~-------~v~v~dr~~----~~--~----~~~~~~g~-----~~~~s~~~~~ 54 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLRED-----GH-------EVVGYDVNQ----EA--V----DVAGKLGI-----TARHSLEELV 54 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhC-----CC-------EEEEEECCH----HH--H----HHHHHCCC-----eecCCHHHHH
Confidence 689999999999999998753 43 577777631 11 1 11211110 1235688888
Q ss_pred cccC-CcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 405 RKVK-PHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 405 ~~vk-ptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+..+ +|++|= +.......++++..+.....+..+|.=+|+-.+
T Consensus 55 ~~~~~advVi~-~vp~~~~~~~v~~~i~~~l~~g~ivid~st~~~ 98 (299)
T PRK12490 55 SKLEAPRTIWV-MVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRY 98 (299)
T ss_pred HhCCCCCEEEE-EecCchHHHHHHHHHhccCCCCCEEEECCCCCc
Confidence 7643 566653 222344667777666443456778888887555
No 113
>PRK06487 glycerate dehydrogenase; Provisional
Probab=88.13 E-value=8.5 Score=40.24 Aligned_cols=196 Identities=17% Similarity=0.151 Sum_probs=111.2
Q ss_pred cCceeccC-c--chhHHHHHHHHHHHHHHh---------CC------------CCCCCCCceEEEeCchhHHHHHHHHHH
Q 009519 288 RFCMFNDD-I--QGTAGVALAGLLGTVRAQ---------GL------------SLTDFADQKIVVVGAGSAGLGVLKMAV 343 (533)
Q Consensus 288 ~~~~FnDD-i--QGTaaV~LAgli~Alr~~---------g~------------~l~dl~~~riv~~GAGsAg~GiA~ll~ 343 (533)
-+.+.|-- . +.+|=-+++.+++..|-. |+ ...+|.++++.|+|.|..|..+|+++.
T Consensus 89 gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~ 168 (317)
T PRK06487 89 GITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAE 168 (317)
T ss_pred CCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHh
Confidence 36555532 2 345556677777766632 10 113566699999999999999999986
Q ss_pred HHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEe----ccCC
Q 009519 344 QAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL----SGVG 419 (533)
Q Consensus 344 ~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~----S~~~ 419 (533)
.. |+ +|+.+|+.+ .+ . .+ ...+|.|+++. .|+++=. ....
T Consensus 169 ~f-----gm-------~V~~~~~~~-----~~----~---~~----------~~~~l~ell~~--sDiv~l~lPlt~~T~ 212 (317)
T PRK06487 169 AF-----GM-------RVLIGQLPG-----RP----A---RP----------DRLPLDELLPQ--VDALTLHCPLTEHTR 212 (317)
T ss_pred hC-----CC-------EEEEECCCC-----Cc----c---cc----------cccCHHHHHHh--CCEEEECCCCChHHh
Confidence 54 33 677777642 10 0 00 12469999988 8998732 1224
Q ss_pred CCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceecCCCeeeecccccceeechhhh
Q 009519 420 GVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIG 499 (533)
Q Consensus 420 g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGig 499 (533)
|.|+++.+..|. +..++.=.|.=.---|-.--+|++ +|+.--|.=-=|.+-..+.+....--+..|+++-|=++
T Consensus 213 ~li~~~~~~~mk----~ga~lIN~aRG~vVde~AL~~AL~--~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia 286 (317)
T PRK06487 213 HLIGARELALMK----PGALLINTARGGLVDEQALADALR--SGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSA 286 (317)
T ss_pred cCcCHHHHhcCC----CCeEEEECCCccccCHHHHHHHHH--cCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccc
Confidence 899999999993 677877666533311222233433 66654342212211111111111101356899999887
Q ss_pred HHHHHhCCcccCHHHHHHHHHHHhcccCCCC
Q 009519 500 LGTLLSGARFITDGMLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 500 lG~l~~~a~~Itd~M~~aAA~alA~~v~~~~ 530 (533)
-.... -.+.|...+++.|.+....++
T Consensus 287 ~~t~e-----~~~~~~~~~~~ni~~~~~g~~ 312 (317)
T PRK06487 287 WGSRE-----ARQRIVGQLAENARAFFAGKP 312 (317)
T ss_pred cCCHH-----HHHHHHHHHHHHHHHHHcCCC
Confidence 33322 234555556666655554444
No 114
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.09 E-value=1.8 Score=45.43 Aligned_cols=95 Identities=13% Similarity=0.219 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh
Q 009519 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (533)
Q Consensus 301 aV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~ 379 (533)
-+|-.|++.=++..+.+++. +++||+|.+ ..|.-+|.||.+.+. +.| ..+.++.++
T Consensus 140 PcTp~ail~ll~~y~i~l~G---k~vvViGrS~iVG~Pla~lL~~~~~-~~~-------atVt~~hs~------------ 196 (295)
T PRK14174 140 SCTPYGILELLGRYNIETKG---KHCVVVGRSNIVGKPMANLMLQKLK-ESN-------CTVTICHSA------------ 196 (295)
T ss_pred CCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHhccc-cCC-------CEEEEEeCC------------
Confidence 35666778888888988888 999999985 578888888875332 122 245555431
Q ss_pred hhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 380 ~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
..+|.+.+++ +|++|+.-+.++.|++++|+ +.-+|.-.+
T Consensus 197 -----------------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk-------~GavVIDVg 235 (295)
T PRK14174 197 -----------------TKDIPSYTRQ--ADILIAAIGKARFITADMVK-------PGAVVIDVG 235 (295)
T ss_pred -----------------chhHHHHHHh--CCEEEEecCccCccCHHHcC-------CCCEEEEee
Confidence 1348888988 99999999999999999995 455665443
No 115
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.09 E-value=0.23 Score=55.28 Aligned_cols=34 Identities=29% Similarity=0.373 Sum_probs=28.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCe
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~ 360 (533)
-+|+|+|||-||+..|++|.+++. .+..-|||.|
T Consensus 16 ~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdR 49 (501)
T KOG0029|consen 16 KKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDR 49 (501)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCC
Confidence 699999999999999999999865 2455677765
No 116
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=87.81 E-value=0.46 Score=46.89 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=31.5
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|+. .||+|+|+|..|..||+.|..+ |+ .+|.++|.+
T Consensus 25 ~L~~---~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 25 KLKK---AKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHhC---CCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 4555 9999999999999999999875 44 689999986
No 117
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=87.81 E-value=0.47 Score=46.24 Aligned_cols=38 Identities=21% Similarity=0.407 Sum_probs=32.2
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++|.+ .||+|+|+|..|.-+|+.|..+.+ ++|+++|.+
T Consensus 17 ~kl~~---~~VlviG~GglGs~ia~~La~~Gv-----------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLN---SHVLIIGAGGLGSPAALYLAGAGV-----------GTIVIVDDD 54 (202)
T ss_pred HHhcC---CCEEEECCCHHHHHHHHHHHHcCC-----------CeEEEecCC
Confidence 34556 999999999999999999987644 689999986
No 118
>PRK07574 formate dehydrogenase; Provisional
Probab=87.81 E-value=9.8 Score=41.26 Aligned_cols=202 Identities=15% Similarity=0.128 Sum_probs=115.2
Q ss_pred HhCCCc-eeeeecCCCchHHHHHHHHhccCceeccCcc---hhHHHHHHHHHHHHHHh---------C--------CCCC
Q 009519 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDIQ---GTAGVALAGLLGTVRAQ---------G--------LSLT 319 (533)
Q Consensus 261 ~~~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQ---GTaaV~LAgli~Alr~~---------g--------~~l~ 319 (533)
...|+. .|+.-=.+..| ..+-.--+..+.+.|-.-- ..|=-+++-+|+.+|-. | ..-.
T Consensus 110 ~~~p~LK~I~~~g~G~D~-id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~ 188 (385)
T PRK07574 110 AKAPNLKLAITAGIGSDH-VDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSY 188 (385)
T ss_pred hhCCCCcEEEECCccccc-ccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccce
Confidence 345776 67765555554 2222222234777775332 34444788888877632 1 0123
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+|..++|.|+|.|..|..+|+.+... |+ +++.+|+... .. +....+ . .....+
T Consensus 189 ~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~---~~----~~~~~~--g------~~~~~~ 241 (385)
T PRK07574 189 DLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRL---PE----EVEQEL--G------LTYHVS 241 (385)
T ss_pred ecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCC---ch----hhHhhc--C------ceecCC
Confidence 45559999999999999999998765 33 6888887432 00 000011 0 011357
Q ss_pred HHHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcc
Q 009519 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 475 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~p 475 (533)
|.|+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|.=..--|..-.+|++ .|+.--|..-=|.+
T Consensus 242 l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aRG~iVDe~AL~~AL~--sG~i~GAaLDV~~~ 313 (385)
T PRK07574 242 FDSLVSV--CDVVTIHCPLHPETEHLFDADVLSRMK----RGSYLVNTARGKIVDRDAVVRALE--SGHLAGYAGDVWFP 313 (385)
T ss_pred HHHHhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC----CCcEEEECCCCchhhHHHHHHHHH--hCCccEEEEecCCC
Confidence 9999988 899873321 13789999999994 577888777644322333334444 66655454322222
Q ss_pred eecCCCeeeecccccceeechhhhH
Q 009519 476 VDLGNGKIGHVNQANNMYLFPGIGL 500 (533)
Q Consensus 476 v~~~~G~~~~p~Q~NN~~iFPGigl 500 (533)
-..+... .--+..|+.+-|=++-
T Consensus 314 EPlp~d~--pL~~~pNvilTPHiag 336 (385)
T PRK07574 314 QPAPADH--PWRTMPRNGMTPHISG 336 (385)
T ss_pred CCCCCCC--hHHhCCCeEECCcccc
Confidence 1111011 1123458888887763
No 119
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=87.74 E-value=3.2 Score=43.87 Aligned_cols=97 Identities=27% Similarity=0.289 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHH------------------HhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEE
Q 009519 301 GVALAGLLGTVR------------------AQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFF 362 (533)
Q Consensus 301 aV~LAgli~Alr------------------~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~ 362 (533)
=-+++.+++..| ..|..|.+ +++-|+|.|..|..+|+.+....+ ++.
T Consensus 105 E~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~g---kTvGIiG~G~IG~~va~~l~afgm------------~v~ 169 (324)
T COG0111 105 ELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAG---KTVGIIGLGRIGRAVAKRLKAFGM------------KVI 169 (324)
T ss_pred HHHHHHHHHHhcCchhhHHHHHcCCccccccccccccC---CEEEEECCCHHHHHHHHHHHhCCC------------eEE
Confidence 335667777666 34455555 999999999999999999987644 688
Q ss_pred EEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEec----cCCCCCCHHHHHHh
Q 009519 363 LLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAM 430 (533)
Q Consensus 363 lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S----~~~g~Fteevv~~M 430 (533)
.+|.. ..++ ....- +.....+|.|.++. .|++.-.- ..-|.++++-+..|
T Consensus 170 ~~d~~----~~~~-----~~~~~-------~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 170 GYDPY----SPRE-----RAGVD-------GVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred EECCC----Cchh-----hhccc-------cceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhC
Confidence 88872 1111 00000 00123579999988 89988542 12389999999999
No 120
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=87.73 E-value=1 Score=46.14 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=71.5
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCC--cC-CccCCCCHHH
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGD--FM-GLREGASLLE 402 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~--~~-~~~~~~~L~e 402 (533)
|.|+|||..|.++|..++. .|+. .++++|.+ .++ +......+.+.... .. ......+. +
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l~------eV~L~Di~----e~~--~~g~~~dl~~~~~~~~~~~~I~~t~d~-~ 62 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KELG------DVVLLDIV----EGL--PQGKALDISQAAPILGSDTKVTGTNDY-E 62 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCCc------EEEEEeCC----CcH--HHHHHHHHHHhhhhcCCCeEEEEcCCH-H
Confidence 5799999999999987764 2431 69999985 111 11000111110000 00 00112444 4
Q ss_pred HhcccCCcEEEEeccC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCc---E
Q 009519 403 VVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGEN---I 465 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Gr---a 465 (533)
+++. +|++|=+.+. +|- +-+++++.|.+ +++..+|+-.|||.. .....+.+++ |. -
T Consensus 63 ~l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~-~~p~~~iIv~sNP~d---i~t~~~~~~s-~~~~~r 135 (300)
T cd01339 63 DIAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKK-YAPNAIVIVVTNPLD---VMTYVAYKAS-GFPRNR 135 (300)
T ss_pred HhCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcHH---HHHHHHHHHh-CCCHHH
Confidence 5777 8988833322 221 23477888854 888889999999995 5555666665 32 5
Q ss_pred EEecCCCC
Q 009519 466 VFASGSPF 473 (533)
Q Consensus 466 i~AtGSPf 473 (533)
+|++|+-.
T Consensus 136 viGlgt~l 143 (300)
T cd01339 136 VIGMAGVL 143 (300)
T ss_pred EEEecchH
Confidence 88988544
No 121
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.67 E-value=1.7 Score=45.28 Aligned_cols=83 Identities=17% Similarity=0.302 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-+|++.=++..+.+++. ++++|+|-+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~G---k~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~----------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEG---KEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK----------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC-----------
Confidence 456778888888999999988 999999975 578888888864 232 46677642
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|++|+|+
T Consensus 192 ------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 ------------------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred ------------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1348888888 99999999999999999988
No 122
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.64 E-value=1.7 Score=45.40 Aligned_cols=82 Identities=17% Similarity=0.297 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh
Q 009519 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (533)
Q Consensus 301 aV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~ 379 (533)
-+|-.|++.=++-.+-+++. +++||+|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 140 PcTp~avi~ll~~y~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~-------atVt~chs~------------ 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTG---KNAVVVGRSPILGKPMAMLLTE-----MN-------ATVTLCHSK------------ 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC------------
Confidence 34567777778888888888 999999975 678888888864 23 246677642
Q ss_pred hhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 380 ~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.++.|+|+
T Consensus 193 -----------------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 -----------------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred -----------------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1347888888 99999999999999999998
No 123
>PLN02602 lactate dehydrogenase
Probab=87.53 E-value=1.8 Score=46.08 Aligned_cols=129 Identities=19% Similarity=0.305 Sum_probs=79.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||..|..+|-.|+. .|+. ..|.|+|.+-=...+. -+|.+.. +|-... .. ....+.++
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~-----~~l~-----~el~LiDi~~~~~~g~a~DL~~~~-~~~~~~-~i---~~~~dy~~ 102 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILT-----QDLA-----DELALVDVNPDKLRGEMLDLQHAA-AFLPRT-KI---LASTDYAV 102 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCC-----CEEEEEeCCCchhhHHHHHHHhhh-hcCCCC-EE---EeCCCHHH
Confidence 399999999999999998764 3553 4799999732111111 1333322 222211 11 11134554
Q ss_pred HhcccCCcEEEEeccC---CCCCCH------------HHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--CcE
Q 009519 403 VVRKVKPHVLLGLSGV---GGVFNE------------EVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENI 465 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~Fte------------evv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--Gra 465 (533)
+++ +|++|=+.+. +| -|+ ++++.|.+ ++..-+|+-.|||.. ....-+++++. =+-
T Consensus 103 -~~d--aDiVVitAG~~~k~g-~tR~dll~~N~~I~~~i~~~I~~-~~p~~ivivvtNPvd---v~t~~~~k~sg~p~~r 174 (350)
T PLN02602 103 -TAG--SDLCIVTAGARQIPG-ESRLNLLQRNVALFRKIIPELAK-YSPDTILLIVSNPVD---VLTYVAWKLSGFPANR 174 (350)
T ss_pred -hCC--CCEEEECCCCCCCcC-CCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCchH---HHHHHHHHHhCCCHHH
Confidence 777 8998844443 34 233 66777754 899999999999995 66667777762 145
Q ss_pred EEecCCCCcc
Q 009519 466 VFASGSPFEN 475 (533)
Q Consensus 466 i~AtGSPf~p 475 (533)
+|++|.-.+.
T Consensus 175 viG~gt~LDs 184 (350)
T PLN02602 175 VIGSGTNLDS 184 (350)
T ss_pred EEeecchHHH
Confidence 7888755443
No 124
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=87.51 E-value=0.49 Score=46.77 Aligned_cols=37 Identities=32% Similarity=0.505 Sum_probs=32.1
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|.+ .||+|+|+|+.|..+|+.|+.+++ ++|.++|.+
T Consensus 18 ~L~~---~~VlivG~GglGs~va~~La~~Gv-----------g~i~lvD~D 54 (228)
T cd00757 18 KLKN---ARVLVVGAGGLGSPAAEYLAAAGV-----------GKLGLVDDD 54 (228)
T ss_pred HHhC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcCC
Confidence 4555 999999999999999999987644 689999987
No 125
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=87.48 E-value=0.69 Score=50.69 Aligned_cols=133 Identities=20% Similarity=0.234 Sum_probs=75.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHH-cCCChhhhcCeEEEEeccCccccCCC-CCChhhhccccc-cCCcCCccCCCCH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARM-AGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKD-PGDFMGLREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~-~Gls~~eA~~~i~lvD~~GLi~~~r~-~l~~~k~~~A~~-~~~~~~~~~~~~L 400 (533)
.||+|+||||+ -+..|+..+... ..++. ..|+|+|-+. +|- -+...-+.+++. ..++. .....++
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~~----~ei~L~DId~----~rl~~v~~l~~~~~~~~g~~~~-v~~Ttdr 68 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFPL----RELVLYDIDA----ERQEKVAEAVKILFKENYPEIK-FVYTTDP 68 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCCC----CEEEEECCCH----HHHHHHHHHHHHHHHhhCCCeE-EEEECCH
Confidence 38999999996 444444444422 34442 6899999753 231 112212222222 11111 0124679
Q ss_pred HHHhcccCCcEEE---------------------Eec-----cCCCC--------CCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 401 LEVVRKVKPHVLL---------------------GLS-----GVGGV--------FNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 401 ~e~V~~vkptvLI---------------------G~S-----~~~g~--------Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
.||+++ +|.+| |+- +.+|. +-.++++.|. +.|+..+++-.|||
T Consensus 69 ~eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~-~~~pda~lin~tNP 145 (437)
T cd05298 69 EEAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIE-KYSPDAWILNYSNP 145 (437)
T ss_pred HHHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHH-HHCCCeEEEEecCc
Confidence 999999 88877 221 12222 2357888885 48999999999999
Q ss_pred CCcccCCHHHHhc-ccCCcEEEecCCCCc
Q 009519 447 TMNAECTAADAFK-HAGENIVFASGSPFE 474 (533)
Q Consensus 447 t~~aE~tpe~A~~-wt~Grai~AtGSPf~ 474 (533)
.. .+|- -+++ ++.-|+|=-+-+|+.
T Consensus 146 ~~--~vt~-~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 146 AA--IVAE-ALRRLFPNARILNICDMPIA 171 (437)
T ss_pred HH--HHHH-HHHHHCCCCCEEEECCcHHH
Confidence 96 4443 2333 344455444555544
No 126
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=87.14 E-value=3.6 Score=43.02 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=63.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccc-cCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~-~~~~~~~~~~~~L~e 402 (533)
.+++|+|+|..|..++..+... .++ ++|+++++. ..+ .......+.+. .-++ ....++++
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~--a~~~a~~~~~~~g~~v---~~~~~~~~ 190 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK--AEALALQLSSLLGIDV---TAATDPRA 190 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH--HHHHHHHHHhhcCceE---EEeCCHHH
Confidence 6899999999999998877653 243 578888772 111 12222222111 0011 12367999
Q ss_pred HhcccCCcEEEEeccC-CCCCCHHHHHHhhhcCCCCCeEEecCCCCC-cccCCHHHH
Q 009519 403 VVRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADA 457 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~-~g~Fteevv~~Ma~~~~erPIIFaLSNPt~-~aE~tpe~A 457 (533)
+++. .|++|-+++. .-.|+.++++.- -.|.++.--++ +.|+.|+-.
T Consensus 191 av~~--aDiVvtaT~s~~p~i~~~~l~~g-------~~i~~vg~~~p~~rEld~~~l 238 (326)
T TIGR02992 191 AMSG--ADIIVTTTPSETPILHAEWLEPG-------QHVTAMGSDAEHKNEIDPAVI 238 (326)
T ss_pred Hhcc--CCEEEEecCCCCcEecHHHcCCC-------cEEEeeCCCCCCceecCHHHH
Confidence 9987 9999977643 346777776632 24444543232 358888763
No 127
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.13 E-value=1.8 Score=45.23 Aligned_cols=83 Identities=16% Similarity=0.351 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-+|++.=++..|-+++. +++||+|.+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 137 ~PcTp~avi~lL~~~~i~l~G---k~vvVvGrS~iVGkPla~lL~~-----~~-------atVtichs~----------- 190 (284)
T PRK14170 137 VPCTPAGIIELIKSTGTQIEG---KRAVVIGRSNIVGKPVAQLLLN-----EN-------ATVTIAHSR----------- 190 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC-----------
Confidence 456677888888889998888 999999975 578888888764 23 246666442
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 191 ------------------T~~l~~~~~~--ADIvI~AvG~~~~i~~~~vk 220 (284)
T PRK14170 191 ------------------TKDLPQVAKE--ADILVVATGLAKFVKKDYIK 220 (284)
T ss_pred ------------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347888888 99999999999999999998
No 128
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=87.04 E-value=1.2 Score=49.00 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=61.1
Q ss_pred HHHHHHHHhCCCceeeeecCCCchHHHHHHHHhcc-Cc--eeccCcchhHHHHHHHHHHHHHHh--------CCCCCCCC
Q 009519 254 EFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKR-FC--MFNDDIQGTAGVALAGLLGTVRAQ--------GLSLTDFA 322 (533)
Q Consensus 254 efv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~-~~--~FnDDiQGTaaV~LAgli~Alr~~--------g~~l~dl~ 322 (533)
+..+-+....|++- .|=+....-.++.++|.-. +| ++||+..+.+....+-+++.++.. ...-.+
T Consensus 137 ~~~~~~a~~~p~i~--~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~-- 212 (515)
T TIGR03140 137 QALNQMALLNPNIS--HTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASALEQLDP-- 212 (515)
T ss_pred HHHHHHHHhCCCce--EEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchhccccCC--
Confidence 33444555567544 3336667778888999765 44 358888888888888888877654 112234
Q ss_pred CceEEEeCchhHHHHHHHHHHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.+++|+|||+||+..|..+.+.
T Consensus 213 -~dVvIIGgGpAGl~AA~~la~~ 234 (515)
T TIGR03140 213 -YDVLVVGGGPAGAAAAIYAARK 234 (515)
T ss_pred -CCEEEECCCHHHHHHHHHHHHC
Confidence 7899999999999999887653
No 129
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.03 E-value=3.6 Score=41.84 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=26.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5899999999999999988764 43 68888874
No 130
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=86.97 E-value=0.55 Score=47.23 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=32.4
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++|++ .||+|+|+|..|..+|+.|+.+++ ++|.++|.+
T Consensus 20 ~~L~~---~~VlvvG~GglGs~va~~La~~Gv-----------g~i~lvD~D 57 (240)
T TIGR02355 20 EALKA---SRVLIVGLGGLGCAASQYLAAAGV-----------GNLTLLDFD 57 (240)
T ss_pred HHHhC---CcEEEECcCHHHHHHHHHHHHcCC-----------CEEEEEeCC
Confidence 34566 999999999999999999987644 689999987
No 131
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=86.95 E-value=1.3 Score=44.44 Aligned_cols=102 Identities=18% Similarity=0.215 Sum_probs=57.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcC-CccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFM-GLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~-~~~~~~~L~e~ 403 (533)
||.|+|+|+.|..+|..|.+. | .+++++|+++=-.. .+......+ .. .+.. ......++.++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~---~~~~~g~~~-~~-~~~~~~~~~~~~~~~~ 64 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLD---ALNENGLRL-ED-GEITVPVLAADDPAEL 64 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHH---HHHHcCCcc-cC-CceeecccCCCChhHc
Confidence 799999999999999988763 3 36888887431110 010000000 00 0000 00012345554
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
+. +|++| ++.. .--++++++.++....++-+|+.+.|...
T Consensus 65 -~~--~d~vi-la~k-~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 65 -GP--QDLVI-LAVK-AYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred -CC--CCEEE-Eecc-cccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 44 78877 4432 33568999999754455556777999754
No 132
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.93 E-value=3 Score=42.55 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=25.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
+||.|+|+|..|.+||..+... |. +++++|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEEC
Confidence 5899999999999999988653 43 5888886
No 133
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=86.73 E-value=14 Score=38.53 Aligned_cols=195 Identities=16% Similarity=0.195 Sum_probs=113.7
Q ss_pred hCCCc-eeeeecCCCchHHHHHHHHhccCceeccCc---chhHHHHHHHHHHHHHHh---------C----C--------
Q 009519 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G----L-------- 316 (533)
Q Consensus 262 ~~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDDi---QGTaaV~LAgli~Alr~~---------g----~-------- 316 (533)
..|+. .|+.-=.+..| ..+-.--+..+.+.|--- ..+|=-+++-+++..|-. | .
T Consensus 60 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~ 138 (311)
T PRK08410 60 QLPNLKLICITATGTNN-VDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISR 138 (311)
T ss_pred hCCCCeEEEEccccccc-ccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCc
Confidence 45765 77766666555 333322234577777422 346666788888887743 1 0
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccC
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~ 396 (533)
+..+|.++++.|+|-|..|..+|+++... |+ +|+.+|+.+- .. ...+ .
T Consensus 139 ~~~~L~gktvGIiG~G~IG~~vA~~~~~f-----gm-------~V~~~d~~~~---~~------~~~~-----------~ 186 (311)
T PRK08410 139 PLGEIKGKKWGIIGLGTIGKRVAKIAQAF-----GA-------KVVYYSTSGK---NK------NEEY-----------E 186 (311)
T ss_pred cccccCCCEEEEECCCHHHHHHHHHHhhc-----CC-------EEEEECCCcc---cc------ccCc-----------e
Confidence 12356669999999999999999998654 43 6888888421 00 0001 1
Q ss_pred CCCHHHHhcccCCcEEEEe----ccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHh-cc-cCCcEEEecC
Q 009519 397 GASLLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF-KH-AGENIVFASG 470 (533)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~----S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~-~w-t~Grai~AtG 470 (533)
..+|.|+++. .|+++=. ...-+.|+++.++.|. +..++.=.|.= ++-=|+|+ ++ .+|+.- |.=
T Consensus 187 ~~~l~ell~~--sDvv~lh~Plt~~T~~li~~~~~~~Mk----~~a~lIN~aRG----~vVDe~AL~~AL~~g~i~-AaL 255 (311)
T PRK08410 187 RVSLEELLKT--SDIISIHAPLNEKTKNLIAYKELKLLK----DGAILINVGRG----GIVNEKDLAKALDEKDIY-AGL 255 (311)
T ss_pred eecHHHHhhc--CCEEEEeCCCCchhhcccCHHHHHhCC----CCeEEEECCCc----cccCHHHHHHHHHcCCeE-EEE
Confidence 2469999988 8988732 1224899999999993 67787766653 33333333 21 366644 321
Q ss_pred CCCcceecCCCeeeec-ccccceeechhhhH
Q 009519 471 SPFENVDLGNGKIGHV-NQANNMYLFPGIGL 500 (533)
Q Consensus 471 SPf~pv~~~~G~~~~p-~Q~NN~~iFPGigl 500 (533)
-=|++-..+....+.. -...|+.+-|=+|-
T Consensus 256 DV~~~EP~~~~~pL~~~~~~~NvilTPH~a~ 286 (311)
T PRK08410 256 DVLEKEPMEKNHPLLSIKNKEKLLITPHIAW 286 (311)
T ss_pred ecCCCCCCCCCChhhccCCCCCEEECCcccc
Confidence 1111111110110110 01258999998874
No 134
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=86.62 E-value=0.58 Score=49.43 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=33.4
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
++|++ .||+|+|+|..|..+|+.|+.+++ .+|.++|.+=
T Consensus 20 ~~L~~---~~VlIiG~GglGs~va~~La~aGv-----------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIRE---KHVLIVGAGALGAANAEALVRAGI-----------GKLTIADRDY 58 (338)
T ss_pred HhhcC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcCCc
Confidence 45666 999999999999999999988755 6899999974
No 135
>PRK08223 hypothetical protein; Validated
Probab=86.49 E-value=0.34 Score=50.42 Aligned_cols=128 Identities=17% Similarity=0.147 Sum_probs=76.8
Q ss_pred HHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhc
Q 009519 279 FETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR 358 (533)
Q Consensus 279 f~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~ 358 (533)
|..-++|..++..|..+-| ++|++ .||+|+|+|..|.-+|..|+.+++
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~---s~VlIvG~GGLGs~va~~LA~aGV----------- 51 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRN---SRVAIAGLGGVGGIHLLTLARLGI----------- 51 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhc---CCEEEECCCHHHHHHHHHHHHhCC-----------
Confidence 5666777766555543322 34556 999999999999999999998765
Q ss_pred CeEEEEeccCccccC--CC------CCChhhhcccc----ccCCc------CCccCCCCHHHHhcccCCcEEEEeccCCC
Q 009519 359 NKFFLLDKDGLITKE--RK------NLDPAAAPFAK----DPGDF------MGLREGASLLEVVRKVKPHVLLGLSGVGG 420 (533)
Q Consensus 359 ~~i~lvD~~GLi~~~--r~------~l~~~k~~~A~----~~~~~------~~~~~~~~L~e~V~~vkptvLIG~S~~~g 420 (533)
.+|.++|.+=+=..+ |. ++-..|.+-|+ .-++. ...-...++.+.+++ .|++|=.+ .
T Consensus 52 G~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~--~DlVvD~~---D 126 (287)
T PRK08223 52 GKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG--VDVYVDGL---D 126 (287)
T ss_pred CeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCccCHHHHHhC--CCEEEECC---C
Confidence 689999987432221 21 12223332222 11110 000022457788877 78887333 3
Q ss_pred CC---CHHHHHHhhhcCCCCCeEEecC
Q 009519 421 VF---NEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 421 ~F---teevv~~Ma~~~~erPIIFaLS 444 (533)
-| +.-+|-..|. ....|.|.+-+
T Consensus 127 ~~~~~~r~~ln~~c~-~~~iP~V~~~~ 152 (287)
T PRK08223 127 FFEFDARRLVFAACQ-QRGIPALTAAP 152 (287)
T ss_pred CCcHHHHHHHHHHHH-HcCCCEEEEec
Confidence 33 4566666654 55689998744
No 136
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=86.32 E-value=0.29 Score=54.13 Aligned_cols=22 Identities=41% Similarity=0.655 Sum_probs=20.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.||||+|||.||++.|..|++.
T Consensus 22 ~kIvIIGAG~AGLaAA~rLle~ 43 (498)
T KOG0685|consen 22 AKIVIIGAGIAGLAAATRLLEN 43 (498)
T ss_pred ceEEEECCchHHHHHHHHHHHh
Confidence 7999999999999999999853
No 137
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.27 E-value=2.1 Score=44.56 Aligned_cols=130 Identities=15% Similarity=0.246 Sum_probs=86.4
Q ss_pred HHHHHHHHHhC--CCc---eeeee---cCCCchHHHHHHHHhcc--C------ceeccCcchhHHHHHHHHHHHHHHhCC
Q 009519 253 DEFMEAVHARW--PKA---IVQFE---DFQMKWAFETLERYRKR--F------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (533)
Q Consensus 253 defv~av~~~~--P~~---~I~~E---Df~~~~af~iL~ryr~~--~------~~FnDDiQGTaaV~LAgli~Alr~~g~ 316 (533)
+||++.++++- |++ ++|+= .+.....++.+.-.+|- + ..|.++..+=.-+|-+|++.=++..+-
T Consensus 74 ~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~avi~lL~~y~i 153 (282)
T PRK14166 74 NELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEI 153 (282)
T ss_pred HHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcccCcccCChhhhHHHhcCCCCCCcCCCHHHHHHHHHHhCC
Confidence 56777777663 543 55653 44333333333332321 1 223332234456678888888899999
Q ss_pred CCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCcc
Q 009519 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
+++. ++++|+|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 154 ~l~G---k~vvVvGrS~iVGkPla~lL~~-----~~-------atVt~chs~---------------------------- 190 (282)
T PRK14166 154 DLEG---KDAVIIGASNIVGRPMATMLLN-----AG-------ATVSVCHIK---------------------------- 190 (282)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CC-------CEEEEeCCC----------------------------
Confidence 9888 999999975 578888888864 23 246666553
Q ss_pred CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|++++|+
T Consensus 191 -T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 191 -TKDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred -CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1237888888 99999999999999999888
No 138
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=86.17 E-value=6.4 Score=41.48 Aligned_cols=182 Identities=11% Similarity=0.127 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHHHHh---------C-----C--CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeE
Q 009519 298 GTAGVALAGLLGTVRAQ---------G-----L--SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF 361 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~---------g-----~--~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i 361 (533)
.+|=-+++-+++.+|-. | . .-.+|...+|.|+|.|..|..+|+.+... |+ ++
T Consensus 105 ~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~-----G~-------~V 172 (330)
T PRK12480 105 TIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGF-----GA-------TI 172 (330)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EE
Confidence 34555677777776632 1 0 01245559999999999999999988653 43 68
Q ss_pred EEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEe-ccC---CCCCCHHHHHHhhhcCCCC
Q 009519 362 FLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL-SGV---GGVFNEEVLKAMRESDSVK 437 (533)
Q Consensus 362 ~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~-S~~---~g~Fteevv~~Ma~~~~er 437 (533)
+.+|+.- .. ...+.+ ...+|.|+++. .|+++=. ... -+.|.++++..|. +.
T Consensus 173 ~~~d~~~----~~------~~~~~~---------~~~~l~ell~~--aDiVil~lP~t~~t~~li~~~~l~~mk----~g 227 (330)
T PRK12480 173 TAYDAYP----NK------DLDFLT---------YKDSVKEAIKD--ADIISLHVPANKESYHLFDKAMFDHVK----KG 227 (330)
T ss_pred EEEeCCh----hH------hhhhhh---------ccCCHHHHHhc--CCEEEEeCCCcHHHHHHHhHHHHhcCC----CC
Confidence 8888641 10 001111 12469999988 8887632 221 1678888888883 56
Q ss_pred CeEEecCCCCCcccCCHHHHhcc-cCCcEEEecCCCCc--ceecC--------CCeee-ecccccceeechhhhHHHHHh
Q 009519 438 PAIFAMSNPTMNAECTAADAFKH-AGENIVFASGSPFE--NVDLG--------NGKIG-HVNQANNMYLFPGIGLGTLLS 505 (533)
Q Consensus 438 PIIFaLSNPt~~aE~tpe~A~~w-t~Grai~AtGSPf~--pv~~~--------~G~~~-~p~Q~NN~~iFPGiglG~l~~ 505 (533)
.++.-.|.-. -+.-++.+++ .+|+.-.|.=-=|+ |..+. +...+ .--+..|+.+=|=++-....+
T Consensus 228 avlIN~aRG~---~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~ 304 (330)
T PRK12480 228 AILVNAARGA---VINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEA 304 (330)
T ss_pred cEEEEcCCcc---ccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHH
Confidence 6777666533 2344333333 25654433211121 11000 00000 013456999999888655444
Q ss_pred CCcccCHHHHHHHHHHHhc
Q 009519 506 GARFITDGMLQQAAEWYVC 524 (533)
Q Consensus 506 ~a~~Itd~M~~aAA~alA~ 524 (533)
. ..|...+++.+-+
T Consensus 305 ~-----~~~~~~~~~n~~~ 318 (330)
T PRK12480 305 V-----QNLVEGGLNAALS 318 (330)
T ss_pred H-----HHHHHHHHHHHHH
Confidence 2 3444444444433
No 139
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=85.97 E-value=4.7 Score=44.98 Aligned_cols=105 Identities=13% Similarity=0.030 Sum_probs=58.3
Q ss_pred cccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---ccc-----CCHHHHhcccCCcEEE-ecCCCCcc
Q 009519 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NAE-----CTAADAFKHAGENIVF-ASGSPFEN 475 (533)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~---~aE-----~tpe~A~~wt~Grai~-AtGSPf~p 475 (533)
+..+|+++|..++. ..=..++-+.+. .-+|=+-+-.-||.+ +.| .|.+++++.. ..++ .-| -.|
T Consensus 108 ~~~~~~~IlasnTS-tl~i~~iA~~~~--~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~e~~~~~--~~l~~~lg--k~p 180 (503)
T TIGR02279 108 ELCPADTIIASNTS-SLSITAIAAGLA--RPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQL--YETALAWG--KQP 180 (503)
T ss_pred hhCCCCeEEEECCC-CCCHHHHHHhcC--cccceEEEeccCccccCceEEEeCCCCCCHHHHHHH--HHHHHHcC--Cee
Confidence 34578888865542 222223444442 234556666777654 222 2233333221 0010 111 122
Q ss_pred eecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHH
Q 009519 476 VDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520 (533)
Q Consensus 476 v~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 520 (533)
|.. | ..||.++|-+.+|.+.-+..+...-.++.+.+.++.+
T Consensus 181 v~v--~--d~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 181 VHC--H--STPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred eEe--C--CCCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 222 1 3578899999999999998888887788888877765
No 140
>PRK13243 glyoxylate reductase; Reviewed
Probab=85.96 E-value=17 Score=38.28 Aligned_cols=202 Identities=23% Similarity=0.190 Sum_probs=115.8
Q ss_pred hCCCc-eeeeecCCCchHHHHHHHHhccCceeccCc---chhHHHHHHHHHHHHHHh---------CC------------
Q 009519 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL------------ 316 (533)
Q Consensus 262 ~~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDDi---QGTaaV~LAgli~Alr~~---------g~------------ 316 (533)
..|+. .|+.-=.+..| ..+..--+..+++.|--- +..|=-+++.+++..|-. |.
T Consensus 64 ~~p~Lk~I~~~~~G~d~-id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~ 142 (333)
T PRK13243 64 AAPRLRIVANYAVGYDN-IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLM 142 (333)
T ss_pred hCCCCeEEEecCccccc-cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcccccccccc
Confidence 44665 67766666655 222222234577777422 234555688888877752 11
Q ss_pred -CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCcc
Q 009519 317 -SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 317 -~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
.-.+|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. .+ . ....+. .
T Consensus 143 ~~g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~-----~~-~--~~~~~~---------~ 193 (333)
T PRK13243 143 FLGYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR-----KP-E--AEKELG---------A 193 (333)
T ss_pred ccccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC-----Ch-h--hHHHcC---------C
Confidence 01356669999999999999999998754 43 578888731 11 0 001110 0
Q ss_pred CCCCHHHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCC
Q 009519 396 EGASLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGS 471 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGS 471 (533)
...+|.|+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|.=..--|-.-.+|.+ +|+.-.|.=-
T Consensus 194 ~~~~l~ell~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk----~ga~lIN~aRg~~vd~~aL~~aL~--~g~i~gAaLD 265 (333)
T PRK13243 194 EYRPLEELLRE--SDFVSLHVPLTKETYHMINEERLKLMK----PTAILVNTARGKVVDTKALVKALK--EGWIAGAGLD 265 (333)
T ss_pred EecCHHHHHhh--CCEEEEeCCCChHHhhccCHHHHhcCC----CCeEEEECcCchhcCHHHHHHHHH--cCCeEEEEec
Confidence 12469999988 898774321 13789999999993 677888777544322222233333 6664433211
Q ss_pred CCcceecCCCeeeecccccceeechhhhHHHHH
Q 009519 472 PFENVDLGNGKIGHVNQANNMYLFPGIGLGTLL 504 (533)
Q Consensus 472 Pf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~ 504 (533)
=|++-..+ +. .--+..|+++-|=++-....
T Consensus 266 V~~~EP~~-~~--pL~~~~nvilTPHia~~t~e 295 (333)
T PRK13243 266 VFEEEPYY-NE--ELFSLKNVVLAPHIGSATFE 295 (333)
T ss_pred cCCCCCCC-Cc--hhhcCCCEEECCcCCcCHHH
Confidence 12111111 11 12245689999998854433
No 141
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=85.93 E-value=4.1 Score=42.40 Aligned_cols=127 Identities=20% Similarity=0.286 Sum_probs=74.6
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC---ccccCCCCCChhhhcccccc-CCcCCccCCCC
Q 009519 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG---LITKERKNLDPAAAPFAKDP-GDFMGLREGAS 399 (533)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G---Li~~~r~~l~~~k~~~A~~~-~~~~~~~~~~~ 399 (533)
||.|+|| |..|..+|..++.. |+. ..++++|++- .+...+.++.+. ..+... ..+ ....+
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~-----g~~-----~~v~lvd~~~~~~~l~~~~~dl~d~--~~~~~~~~~i---~~~~d 66 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKE-----DVV-----KEINLISRPKSLEKLKGLRLDIYDA--LAAAGIDAEI---KISSD 66 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CCC-----CEEEEEECcccccccccccchhhhc--hhccCCCcEE---EECCC
Confidence 7999998 99999999987753 442 3799999852 111111122211 011110 011 11234
Q ss_pred HHHHhcccCCcEEEEeccCC---C-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CC
Q 009519 400 LLEVVRKVKPHVLLGLSGVG---G-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GE 463 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~---g-----------~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~G 463 (533)
.+.+++ .|++|=+.+.| | .+-+++++.|.+ ++...+|+--+||.+ +....+++++ ..
T Consensus 67 -~~~l~~--aDiViitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~-~~~~~~viv~~npvd---~~t~~~~~~~g~~~ 139 (309)
T cd05294 67 -LSDVAG--SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAE-FAPDTKILVVTNPVD---VMTYKALKESGFDK 139 (309)
T ss_pred -HHHhCC--CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEeCCchH---HHHHHHHHhcCCCH
Confidence 445877 89877444432 2 245677788864 778999999999986 4455555443 12
Q ss_pred cEEEecCCCC
Q 009519 464 NIVFASGSPF 473 (533)
Q Consensus 464 rai~AtGSPf 473 (533)
+-+|++|.-.
T Consensus 140 ~~viG~gt~L 149 (309)
T cd05294 140 NRVFGLGTHL 149 (309)
T ss_pred HHEeeccchH
Confidence 4478887543
No 142
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=85.91 E-value=1.6 Score=44.97 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=32.6
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
+|++ .+|+|+|+|..|.-+|+.|+.+++ ++|.++|.+=+
T Consensus 27 kL~~---s~VlVvG~GGVGs~vae~Lar~GV-----------g~itLiD~D~V 65 (268)
T PRK15116 27 LFAD---AHICVVGIGGVGSWAAEALARTGI-----------GAITLIDMDDV 65 (268)
T ss_pred HhcC---CCEEEECcCHHHHHHHHHHHHcCC-----------CEEEEEeCCEe
Confidence 3455 999999999999999999987644 68999998744
No 143
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=85.89 E-value=1.1 Score=46.94 Aligned_cols=103 Identities=17% Similarity=0.203 Sum_probs=55.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc--cccCC---CCCChhhhccccccCCcCCccCCC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKER---KNLDPAAAPFAKDPGDFMGLREGA 398 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL--i~~~r---~~l~~~k~~~A~~~~~~~~~~~~~ 398 (533)
.||.|+|||+-|..+|..|.+. | . -.+|..|..-. +...+ ..+.. ...+ +. . ..-..
T Consensus 8 mkI~IiGaGa~G~alA~~La~~-----g-~-----v~l~~~~~~~~~~i~~~~~~~~~l~~-~~~l--~~-~---i~~t~ 69 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARR-----G-P-----TLQWVRSAETADDINDNHRNSRYLGN-DVVL--SD-T---LRATT 69 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----C-C-----EEEEeCCHHHHHHHHhcCCCcccCCC-Cccc--CC-C---eEEEC
Confidence 6899999999999999988753 3 1 23454332110 00011 01110 0000 00 0 01124
Q ss_pred CHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++.++++. +|++| ++. +--+.+++++.++....++.+|..++|-..
T Consensus 70 d~~~a~~~--aDlVi-lav-ps~~~~~vl~~i~~~l~~~~~vIsl~kGi~ 115 (341)
T PRK12439 70 DFAEAANC--ADVVV-MGV-PSHGFRGVLTELAKELRPWVPVVSLVKGLE 115 (341)
T ss_pred CHHHHHhc--CCEEE-EEe-CHHHHHHHHHHHHhhcCCCCEEEEEEeCCc
Confidence 67788776 67544 332 334788888888654455556677888554
No 144
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=85.83 E-value=5 Score=36.14 Aligned_cols=98 Identities=14% Similarity=0.241 Sum_probs=49.8
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||+++|+ |-.|..|++.+.+. .|+ +=...+|++.=-..+. ++.+ ++...+ .+.+-..+|++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~----~~~------~lv~~v~~~~~~~~g~-d~g~----~~~~~~--~~~~v~~~l~~ 63 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES----PGF------ELVGAVDRKPSAKVGK-DVGE----LAGIGP--LGVPVTDDLEE 63 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS----TTE------EEEEEEETTTSTTTTS-BCHH----HCTSST---SSBEBS-HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc----CCc------EEEEEEecCCcccccc-hhhh----hhCcCC--cccccchhHHH
Confidence 38999999 99999999998772 344 2366777765111111 1111 111000 01112356777
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
+++. +||+|=.|. |... .+.++...+ +..|+|..=+
T Consensus 64 ~~~~--~DVvIDfT~-p~~~-~~~~~~~~~--~g~~~ViGTT 99 (124)
T PF01113_consen 64 LLEE--ADVVIDFTN-PDAV-YDNLEYALK--HGVPLVIGTT 99 (124)
T ss_dssp HTTH---SEEEEES--HHHH-HHHHHHHHH--HT-EEEEE-S
T ss_pred hccc--CCEEEEcCC-hHHh-HHHHHHHHh--CCCCEEEECC
Confidence 7777 888887774 2222 233343332 3556665433
No 145
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=85.80 E-value=4.4 Score=43.40 Aligned_cols=130 Identities=11% Similarity=0.109 Sum_probs=73.7
Q ss_pred ccccccCChhhHHHHHhcCCCCCeeEE-EEecCceeeccCCCCCCcccccchhhhhH-----hhhcCCCCCc-eecEEee
Q 009519 149 GMYFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLDVY-----VAAAGINPQR-ILPVMLD 221 (533)
Q Consensus 149 Glyis~~d~~~i~~~l~n~p~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~~GKl~LY-----~a~aGI~P~~-~lPI~LD 221 (533)
|. ++..|-..+.++|+.. +++++ +++|+ .+--+-..|.+.+-+..+....+ ..=-||..-. .+|+-+
T Consensus 162 G~-~~~~d~~el~~lL~~~---Gi~v~~~~~d~-~~~~~~~~~~a~~~~~~~~~~~~~A~~Le~r~giP~~~~~~P~G~- 235 (396)
T cd01979 162 GS-LPDIVEDQLRRELEQL---GIPVVGFLPPR-RYTDLPVIGPGTYVLGIQPFLSRTATTLMRRRKCKLLSAPFPIGP- 235 (396)
T ss_pred Ee-CCcchHHHHHHHHHHc---CCeEEEEeCCC-ChHHhhccCcceEEEEeChhHHHHHHHHHHhcCCCcccCCcCcCh-
Confidence 44 3456667788888864 56665 77874 45555555555444433322222 1223554222 133222
Q ss_pred ccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhccCceeccCcchhHH
Q 009519 222 VGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAG 301 (533)
Q Consensus 222 vGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaa 301 (533)
+-.++|++.+.+.+.. .+ +.+++.+.+
T Consensus 236 ----------------------------~~t~~~l~~la~~~g~---------~~---~~i~~e~~~------------- 262 (396)
T cd01979 236 ----------------------------DGTRAWLEAICSAFGI---------FP---SVLAEREAR------------- 262 (396)
T ss_pred ----------------------------HHHHHHHHHHHHHhCC---------Ch---hHHHHHHHH-------------
Confidence 2378888888877641 01 123333221
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHH
Q 009519 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 302 V~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
+.-++......|.. .|++|+|-+.-..++++.|.+.
T Consensus 263 -----~~~~l~~~~~~l~G---krv~i~g~~~~~~~la~~L~el 298 (396)
T cd01979 263 -----AWRALEPYLDLLRG---KSIFFMGDNLLEIPLARFLTRC 298 (396)
T ss_pred -----HHHHHHHHHHhhcC---CEEEEECCchHHHHHHHHHHHC
Confidence 33444445555566 8999999998899999988874
No 146
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=85.80 E-value=0.68 Score=45.11 Aligned_cols=78 Identities=23% Similarity=0.430 Sum_probs=48.4
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccc-cCCcCCcc
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDFMGLR 395 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~-~~~~~~~~ 395 (533)
+|++ .||+|+|+|.-|.-+|+.|+.+++ ++|.++|.+=+ .. .+++.+ .|.+. ..+ -|.+
T Consensus 16 ~L~~---s~VlviG~gglGsevak~L~~~GV-----------g~i~lvD~d~v-e~--snl~rq--~~~~~~~~~-iG~~ 75 (198)
T cd01485 16 KLRS---AKVLIIGAGALGAEIAKNLVLAGI-----------DSITIVDHRLV-ST--EDLGSN--FFLDAEVSN-SGMN 75 (198)
T ss_pred HHhh---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEECCcC-Ch--hcCccc--Eecccchhh-cCch
Confidence 4555 999999999999999999987755 68999998732 22 234322 12221 001 1111
Q ss_pred CCCCHHHHhcccCCcEEEE
Q 009519 396 EGASLLEVVRKVKPHVLLG 414 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG 414 (533)
....+.+.++...|++=|=
T Consensus 76 Ka~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 76 RAAASYEFLQELNPNVKLS 94 (198)
T ss_pred HHHHHHHHHHHHCCCCEEE
Confidence 1234666677777877543
No 147
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.78 E-value=2.4 Score=44.47 Aligned_cols=83 Identities=14% Similarity=0.187 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.-++..+.+++. +++|++|.+ ..|.-+|.||... | ..+.+|+|+
T Consensus 140 ~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~-----~-------aTVt~chs~----------- 193 (294)
T PRK14187 140 IPCTPKGCLYLIKTITRNLSG---SDAVVIGRSNIVGKPMACLLLGE-----N-------CTVTTVHSA----------- 193 (294)
T ss_pred cCcCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHhhC-----C-------CEEEEeCCC-----------
Confidence 456778888889999999888 999999985 5788888888642 3 246666653
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.++.++|+
T Consensus 194 ------------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 194 ------------------TRDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1247788888 99999999999999999998
No 148
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=85.67 E-value=1.4 Score=46.65 Aligned_cols=39 Identities=28% Similarity=0.535 Sum_probs=32.5
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
.+|++ .||+|+|+|.-|.-+|..|..+++ .+|.++|.+-
T Consensus 20 ~~L~~---~~VlVvG~GglGs~va~~La~aGv-----------g~i~lvD~D~ 58 (339)
T PRK07688 20 QKLRE---KHVLIIGAGALGTANAEMLVRAGV-----------GKVTIVDRDY 58 (339)
T ss_pred HHhcC---CcEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCCc
Confidence 34556 999999999999999999987644 6899999963
No 149
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=85.64 E-value=1.7 Score=48.04 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=26.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.||.|+|+|..|.+||..++.+ |. +++++|.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~ 35 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDP 35 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 4899999999999999998764 53 6788887
No 150
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=85.51 E-value=0.79 Score=42.51 Aligned_cols=31 Identities=29% Similarity=0.643 Sum_probs=25.4
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||||+|+|.||+..|..|... | .+++++|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-----~-------~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-----G-------AKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhcC-----C-------CeEEEEecc
Confidence 699999999999999999842 3 378888654
No 151
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.29 E-value=0.78 Score=41.60 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=64.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
||+++|+|..|..+|+.|+..++ ++|.++|.+-+ .. .+|..+ .|.... + -|.+....+.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv-----------~~i~ivD~d~v-~~--~nl~r~--~~~~~~-~-vG~~Ka~~~~~~l 62 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGV-----------GKITLIDFDTV-EL--SNLNRQ--FLARQA-D-IGKPKAEVAARRL 62 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-----------CEEEEEcCCCc-Cc--chhhcc--ccCChh-H-CCChHHHHHHHHH
Confidence 68999999999999999987644 68999998733 22 234322 222111 0 0111123467777
Q ss_pred cccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecC
Q 009519 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASG 470 (533)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtG 470 (533)
+...|.+=|-... ..++++..... ..+-.||+.-+... .+...-.++.+ ..|...+.+|
T Consensus 63 ~~~~p~v~i~~~~--~~~~~~~~~~~---~~~~diVi~~~d~~-~~~~~l~~~~~-~~~i~~i~~~ 121 (143)
T cd01483 63 NELNPGVNVTAVP--EGISEDNLDDF---LDGVDLVIDAIDNI-AVRRALNRACK-ELGIPVIDAG 121 (143)
T ss_pred HHHCCCcEEEEEe--eecChhhHHHH---hcCCCEEEECCCCH-HHHHHHHHHHH-HcCCCEEEEc
Confidence 7777776554332 33444332222 23555777554432 12222223222 2355566555
No 152
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=85.27 E-value=2.3 Score=41.62 Aligned_cols=100 Identities=12% Similarity=0.202 Sum_probs=55.6
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
..||.|+|+|..|..++..++.. |.. -.++++++++. +.+.+...+..|- . ....++.+
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~~~~~~~~~~~~~-----~---~~~~~~~~ 62 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----NVEKLDQLQARYN-----V---STTTDWKQ 62 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----CHHHHHHHHHHcC-----c---EEeCChHH
Confidence 37999999999999999888653 210 01246655541 0011222222221 0 11245777
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++++ .|++| ++..+. .-+++++.++. +-+..+|+.++.-.+
T Consensus 63 ~~~~--~DiVi-iavp~~-~~~~v~~~l~~-~~~~~~vis~~~gi~ 103 (245)
T PRK07634 63 HVTS--VDTIV-LAMPPS-AHEELLAELSP-LLSNQLVVTVAAGIG 103 (245)
T ss_pred HHhc--CCEEE-EecCHH-HHHHHHHHHHh-hccCCEEEEECCCCC
Confidence 7765 77766 443333 44788888854 223456666766554
No 153
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.26 E-value=2 Score=45.02 Aligned_cols=92 Identities=15% Similarity=0.228 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeC-chhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=++..+.+++. ++|+|+| .|..|..+|.+|... |. .+.+++++ .
T Consensus 138 ~PcTp~ai~~ll~~~~i~~~G---k~V~viGrs~~mG~PmA~~L~~~-----g~-------tVtv~~~r-------T--- 192 (296)
T PRK14188 138 VPCTPLGCMMLLRRVHGDLSG---LNAVVIGRSNLVGKPMAQLLLAA-----NA-------TVTIAHSR-------T--- 192 (296)
T ss_pred cCCCHHHHHHHHHHhCCCCCC---CEEEEEcCCcchHHHHHHHHHhC-----CC-------EEEEECCC-------C---
Confidence 455677888888888888888 9999999 999999999999853 43 46666431 1
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
.+|.|++++ .|++|-.-+.++.+++++++ +.-+|.=++
T Consensus 193 -------------------~~l~e~~~~--ADIVIsavg~~~~v~~~~lk-------~GavVIDvG 230 (296)
T PRK14188 193 -------------------RDLPAVCRR--ADILVAAVGRPEMVKGDWIK-------PGATVIDVG 230 (296)
T ss_pred -------------------CCHHHHHhc--CCEEEEecCChhhcchheec-------CCCEEEEcC
Confidence 137788887 89999888888888887733 455666555
No 154
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=85.20 E-value=1.7 Score=46.34 Aligned_cols=100 Identities=20% Similarity=0.315 Sum_probs=55.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc--cccCCCCCChhhhccccccCCc-CCccCCCCH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL--ITKERKNLDPAAAPFAKDPGDF-MGLREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL--i~~~r~~l~~~k~~~A~~~~~~-~~~~~~~~L 400 (533)
.||.|+|||+=|+++|..+.+- |-. =++|..|.+=. |..+|. + ..|-.. -.. ....-..+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~n-----g~~-----V~lw~r~~~~~~~i~~~~~--N---~~yLp~-i~lp~~l~at~Dl 65 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN-----GHE-----VRLWGRDEEIVAEINETRE--N---PKYLPG-ILLPPNLKATTDL 65 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc-----CCe-----eEEEecCHHHHHHHHhcCc--C---ccccCC-ccCCcccccccCH
Confidence 6899999999999999998874 311 26776654311 111111 1 111110 000 001124678
Q ss_pred HHHhcccCCcE-EEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 401 LEVVRKVKPHV-LLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 401 ~e~V~~vkptv-LIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
.++++. .|+ +++++++ +-+++++.|.....++.+|.-+|
T Consensus 66 ~~a~~~--ad~iv~avPs~---~~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 66 AEALDG--ADIIVIAVPSQ---ALREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred HHHHhc--CCEEEEECChH---HHHHHHHHHhhhccCCCeEEEEe
Confidence 898887 554 5555554 77788888753344555555554
No 155
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.06 E-value=2.6 Score=44.05 Aligned_cols=85 Identities=16% Similarity=0.326 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.-++..+-+++. ++++++|.+ ..|.-+|.||..-. .+. .+.+|.|+
T Consensus 138 ~PcTp~av~~ll~~~~i~l~G---k~vvViGrS~~VGkPla~lL~~~~---~~a-------tVtvchs~----------- 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRYDVELAG---AHVVVIGRGVTVGRPIGLLLTRRS---ENA-------TVTLCHTG----------- 193 (284)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHhhcc---CCC-------EEEEeCCC-----------
Confidence 456778888888999998888 999999975 67888888886410 222 45666542
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.++.|+|+
T Consensus 194 ------------------T~~l~~~~k~--ADIvV~AvGkp~~i~~~~ik 223 (284)
T PRK14193 194 ------------------TRDLAAHTRR--ADIIVAAAGVAHLVTADMVK 223 (284)
T ss_pred ------------------CCCHHHHHHh--CCEEEEecCCcCccCHHHcC
Confidence 1348888988 99999999999999999988
No 156
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=84.95 E-value=3.7 Score=42.30 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=58.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccC-C--cC--CccCCC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPG-D--FM--GLREGA 398 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~-~--~~--~~~~~~ 398 (533)
.||.|+|+|..|..+|..|.++ | .+++++|+..-.. .+......+..... + +. ......
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~-----G-------~~V~~~~r~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 66 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAA-----G-------ADVTLIGRARIGD----ELRAHGLTLTDYRGRDVRVPPSAIAFST 66 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----C-------CcEEEEecHHHHH----HHHhcCceeecCCCcceecccceeEecc
Confidence 4899999999999999998764 3 2688888742110 01000000000000 0 00 000112
Q ss_pred CHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc
Q 009519 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN 449 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~ 449 (533)
++ ++++. +|++|=+. +.-..+++++.+.....+..+|..+.|....
T Consensus 67 ~~-~~~~~--~D~vil~v--k~~~~~~~~~~l~~~~~~~~iii~~~nG~~~ 112 (341)
T PRK08229 67 DP-AALAT--ADLVLVTV--KSAATADAAAALAGHARPGAVVVSFQNGVRN 112 (341)
T ss_pred Ch-hhccC--CCEEEEEe--cCcchHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence 34 45554 78877433 2233578888886544666788889997653
No 157
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.94 E-value=0.84 Score=43.58 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=28.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||+++|+|..|..||+.|+.+++ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gv-----------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGV-----------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCC-----------CeEEEEeCC
Confidence 68999999999999999987644 689999987
No 158
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=84.92 E-value=2.6 Score=44.29 Aligned_cols=84 Identities=19% Similarity=0.305 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l 377 (533)
-.-+|-+|++.=++-.|-+++. +++||+|-+ ..|.-+|.||.. .| ..+.+|+|+
T Consensus 146 ~~PcTp~avi~lL~~~~i~l~G---k~vvVIGRS~iVGkPla~lL~~-----~~-------ATVtvchs~---------- 200 (299)
T PLN02516 146 FLPCTPKGCLELLSRSGIPIKG---KKAVVVGRSNIVGLPVSLLLLK-----AD-------ATVTVVHSR---------- 200 (299)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CC-------CEEEEeCCC----------
Confidence 3456777788888888988888 999999975 568888888764 23 257777553
Q ss_pred ChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 378 ~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 201 -------------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 -------------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred -------------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1348888888 99999999999999999998
No 159
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.89 E-value=2.7 Score=44.03 Aligned_cols=130 Identities=13% Similarity=0.227 Sum_probs=85.8
Q ss_pred HHHHHHHHHhC--CCc---eeeee---cCCCchHHHHHHHHhcc--C------ceeccCcchhHHHHHHHHHHHHHHhCC
Q 009519 253 DEFMEAVHARW--PKA---IVQFE---DFQMKWAFETLERYRKR--F------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (533)
Q Consensus 253 defv~av~~~~--P~~---~I~~E---Df~~~~af~iL~ryr~~--~------~~FnDDiQGTaaV~LAgli~Alr~~g~ 316 (533)
+|+++.++++- |++ ++|+= .+.....++.++-.+|- + ..|..+-.+=.-+|-+|++.=++..+.
T Consensus 76 ~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~PcTp~av~~lL~~y~i 155 (288)
T PRK14171 76 NDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPSKDIDGFHPLNVGYLHSGISQGFIPCTALGCLAVIKKYEP 155 (288)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcccccccCCccchhhhhcCCCCCCcCCCHHHHHHHHHHhCC
Confidence 56777777664 543 55653 33333333333322221 1 122222233456677888888999999
Q ss_pred CCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCcc
Q 009519 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
+++. .++||+|.+ ..|.-+|.||.. .|. .+.+|+|+
T Consensus 156 ~l~G---K~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~---------------------------- 192 (288)
T PRK14171 156 NLTG---KNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK---------------------------- 192 (288)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC----------------------------
Confidence 8888 999999975 578888888864 232 46666542
Q ss_pred CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-.-+.++.+++++|+
T Consensus 193 -T~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 193 -THNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred -CCCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 1248888888 99999999999999999998
No 160
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.86 E-value=2.6 Score=44.24 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
+-.-+|-.|++.=++-.|.+++. ++++|+|.+ ..|.-+|.||... |.. ....+.+|.|+
T Consensus 139 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~-----~~~---~~atVtv~hs~--------- 198 (297)
T PRK14168 139 KFLPCTPAGIQEMLVRSGVETSG---AEVVVVGRSNIVGKPIANMMTQK-----GPG---ANATVTIVHTR--------- 198 (297)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcccHHHHHHHHhc-----ccC---CCCEEEEecCC---------
Confidence 33456778888888889999988 999999975 5788888887642 210 00245555443
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
..+|.+.+++ +|++|-..++++.++.++|+ +..||+=-.
T Consensus 199 --------------------T~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik-------~gavVIDvG 237 (297)
T PRK14168 199 --------------------SKNLARHCQR--ADILIVAAGVPNLVKPEWIK-------PGATVIDVG 237 (297)
T ss_pred --------------------CcCHHHHHhh--CCEEEEecCCcCccCHHHcC-------CCCEEEecC
Confidence 1248888888 99999999999999999998 345665443
No 161
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=84.80 E-value=0.68 Score=49.56 Aligned_cols=39 Identities=26% Similarity=0.472 Sum_probs=33.4
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
++|++ .||+|+|+|..|..+|+.|+.+++ ++|.++|.+=
T Consensus 37 ~~l~~---~~VliiG~GglG~~v~~~La~~Gv-----------g~i~ivD~D~ 75 (370)
T PRK05600 37 ERLHN---ARVLVIGAGGLGCPAMQSLASAGV-----------GTITLIDDDT 75 (370)
T ss_pred HHhcC---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEeCCE
Confidence 55666 999999999999999999987654 6899999873
No 162
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=84.79 E-value=5.1 Score=40.58 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=20.6
Q ss_pred CCceEEEeCchhHHHHHHHHHHHH
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
+..||.|+|+|..|.+||+.|+..
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~ 25 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHA 25 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHC
Confidence 347999999999999999988753
No 163
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=84.78 E-value=0.87 Score=45.83 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=32.8
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++|++ .||+|+|+|..|.-+|+.|+.+++ ++|.++|.+
T Consensus 28 ~~L~~---~~VliiG~GglGs~va~~La~~Gv-----------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKA---ARVLVVGLGGLGCAASQYLAAAGV-----------GTLTLVDFD 65 (245)
T ss_pred HHhcC---CeEEEECCCHHHHHHHHHHHHcCC-----------CEEEEEcCC
Confidence 35666 999999999999999999987644 689999987
No 164
>PRK06436 glycerate dehydrogenase; Provisional
Probab=84.67 E-value=11 Score=39.54 Aligned_cols=135 Identities=14% Similarity=0.199 Sum_probs=81.5
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+|..+++.|+|-|..|..+|+++... |+ +++.+|+... .+.. . ....+
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~af-----G~-------~V~~~~r~~~----~~~~--------~--------~~~~~ 166 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAF-----GM-------NIYAYTRSYV----NDGI--------S--------SIYME 166 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCCc----ccCc--------c--------cccCC
Confidence 45559999999999999999866543 43 6888887411 0000 0 01246
Q ss_pred HHHHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcc
Q 009519 400 LLEVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFEN 475 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~p 475 (533)
|.|+++. .|+++=.- ..-+.|+++.++.|. +..++.=.|.-..--|-.-.+|++ +|+...|.=-=|++
T Consensus 167 l~ell~~--aDiv~~~lp~t~~T~~li~~~~l~~mk----~ga~lIN~sRG~~vd~~aL~~aL~--~g~i~~a~lDV~~~ 238 (303)
T PRK06436 167 PEDIMKK--SDFVLISLPLTDETRGMINSKMLSLFR----KGLAIINVARADVVDKNDMLNFLR--NHNDKYYLSDVWWN 238 (303)
T ss_pred HHHHHhh--CCEEEECCCCCchhhcCcCHHHHhcCC----CCeEEEECCCccccCHHHHHHHHH--cCCceEEEEccCCC
Confidence 9999987 89887321 123789999999994 678888888755422333344444 55444332111211
Q ss_pred eecCCCeeeecccccceeechhhh
Q 009519 476 VDLGNGKIGHVNQANNMYLFPGIG 499 (533)
Q Consensus 476 v~~~~G~~~~p~Q~NN~~iFPGig 499 (533)
-..++. ....|+++=|=++
T Consensus 239 EP~~~~-----~~~~nviiTPHi~ 257 (303)
T PRK06436 239 EPIITE-----TNPDNVILSPHVA 257 (303)
T ss_pred CCCCcc-----CCCCCEEECCccc
Confidence 111101 1467889888764
No 165
>PRK07680 late competence protein ComER; Validated
Probab=84.60 E-value=2.2 Score=43.01 Aligned_cols=98 Identities=9% Similarity=0.206 Sum_probs=55.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcC-CChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~G-ls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
+|.|+|+|..|..+|..|.+. | +. ..+++++|++ .. ... .++..... .....+..++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~v~v~~r~----~~--~~~----~~~~~~~g---~~~~~~~~~~ 59 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLES-----GAVK----PSQLTITNRT----PA--KAY----HIKERYPG---IHVAKTIEEV 59 (273)
T ss_pred EEEEECccHHHHHHHHHHHHC-----CCCC----cceEEEECCC----HH--HHH----HHHHHcCC---eEEECCHHHH
Confidence 699999999999999988653 3 11 1367777663 11 111 11111000 0112456677
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++. +|++| ++. +....+++++.++....+..+|..++|+.+
T Consensus 60 ~~~--aDiVi-lav-~p~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 60 ISQ--SDLIF-ICV-KPLDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred HHh--CCEEE-Eec-CHHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 765 67765 332 233457777777543345568888888765
No 166
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=84.42 E-value=0.84 Score=45.89 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=30.8
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
++.||+|+|+|..|.-+|+.|+.+++ .+|.++|.+=
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GV-----------g~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGV-----------GKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCC-----------CEEEEECCCE
Confidence 34999999999999999999987644 6999999863
No 167
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.25 E-value=3 Score=43.48 Aligned_cols=84 Identities=14% Similarity=0.296 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCC
Q 009519 299 TAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNL 377 (533)
Q Consensus 299 TaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l 377 (533)
=.-+|-.|++.=++..+.+++. +++||+|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 135 ~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~a-------tVtichs~---------- 189 (282)
T PRK14169 135 VVASTPYGIMALLDAYDIDVAG---KRVVIVGRSNIVGRPLAGLMVN-----HDA-------TVTIAHSK---------- 189 (282)
T ss_pred CCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEECCC----------
Confidence 3456778888888889999988 999999975 578888888864 232 45555432
Q ss_pred ChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 378 DPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 378 ~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|+.|+|+
T Consensus 190 -------------------T~~l~~~~~~--ADIvI~AvG~p~~i~~~~vk 219 (282)
T PRK14169 190 -------------------TRNLKQLTKE--ADILVVAVGVPHFIGADAVK 219 (282)
T ss_pred -------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1347888888 99999999999999999888
No 168
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=84.25 E-value=1.8 Score=47.71 Aligned_cols=94 Identities=15% Similarity=0.195 Sum_probs=65.9
Q ss_pred HHHHHhCCCceeeeecCCCchHHHHHHHHhcc-Cc--eeccCcchhHHHHHHHHHHHHHHhCC--------CCCCCCCce
Q 009519 257 EAVHARWPKAIVQFEDFQMKWAFETLERYRKR-FC--MFNDDIQGTAGVALAGLLGTVRAQGL--------SLTDFADQK 325 (533)
Q Consensus 257 ~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~-~~--~FnDDiQGTaaV~LAgli~Alr~~g~--------~l~dl~~~r 325 (533)
+.+....|+ |.+|=+....-.++.++|.-. +| ++||+....|....+-++..++.... ...+ ..
T Consensus 139 ~~~a~~~~~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d 213 (517)
T PRK15317 139 NLMAVLNPN--ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDP---YD 213 (517)
T ss_pred HHHHHhCCC--ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCC---CC
Confidence 334444564 445555667778889999765 44 35777888888888899988875321 1233 68
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+||+|||.||+..|..+.. .|+ ++.++|.+
T Consensus 214 vvIIGgGpaGl~aA~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 214 VLVVGGGPAGAAAAIYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred EEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecC
Confidence 9999999999999998864 464 56667654
No 169
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.22 E-value=2 Score=46.08 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.||.|+|||+-|+++|..+.+-
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n 33 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN 33 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc
Confidence 7999999999999999999864
No 170
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.14 E-value=4.8 Score=42.29 Aligned_cols=129 Identities=21% Similarity=0.218 Sum_probs=77.7
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
||.|+|| |..|..+|-.|+. .|+. ..+.|+|.+ + ..+. -+|.+.. .+.+ ..+.....++.+
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~~-----~elvLiDi~-~-a~g~alDL~~~~-~~~~----i~~~~~~~~~y~ 64 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPLV-----SELALYDIV-N-TPGVAADLSHIN-TPAK----VTGYLGPEELKK 64 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCCC-----cEEEEEecC-c-cceeehHhHhCC-Ccce----EEEecCCCchHH
Confidence 8999999 9999999987743 4553 579999998 2 2322 2454432 1111 100001134678
Q ss_pred HhcccCCcEEEEeccC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCc-ccCCHHHHhcccCC--cE
Q 009519 403 VVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMN-AECTAADAFKHAGE--NI 465 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~-aE~tpe~A~~wt~G--ra 465 (533)
.+++ .|++|=+.+. +|- .-+++++.+.+ +++..+|+-.|||..- +.+..+-+++++.= +-
T Consensus 65 ~~~d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~-~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~r 141 (310)
T cd01337 65 ALKG--ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAK-ACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKR 141 (310)
T ss_pred hcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHH
Confidence 8888 8988745444 342 23456666754 8999999999999841 11124455555421 14
Q ss_pred EEecCCCCc
Q 009519 466 VFASGSPFE 474 (533)
Q Consensus 466 i~AtGSPf~ 474 (533)
+|++|. .+
T Consensus 142 viG~~~-LD 149 (310)
T cd01337 142 LFGVTT-LD 149 (310)
T ss_pred EEeeec-hH
Confidence 778775 54
No 171
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.11 E-value=3.9 Score=42.78 Aligned_cols=127 Identities=20% Similarity=0.313 Sum_probs=77.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||..|..+|..|+. .|+. ..|.|+|.+-=...+- -+|.+.. +|.... .. ....+.++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~-----~~~~-----~el~LiD~~~~~~~g~a~Dl~~~~-~~~~~~-~v---~~~~dy~~ 68 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILA-----KGLA-----DELVLVDVVEDKLKGEAMDLQHGS-AFLKNP-KI---EADKDYSV 68 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHHHHHHHhh-ccCCCC-EE---EECCCHHH
Confidence 599999999999999987754 3543 5799999742111111 1333222 232211 11 11245555
Q ss_pred HhcccCCcEEEEeccC---CCCCC------------HHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCcE
Q 009519 403 VVRKVKPHVLLGLSGV---GGVFN------------EEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENI 465 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~---~g~Ft------------eevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Gra 465 (533)
+++ +|++|=+.+. +| -| +++++.|.+ ++..-+|+-.|||.. ....-+++++ .-+-
T Consensus 69 -~~~--adivvitaG~~~k~g-~~R~dll~~N~~i~~~~~~~i~~-~~p~~~vivvsNP~d---~~t~~~~k~sg~p~~~ 140 (312)
T cd05293 69 -TAN--SKVVIVTAGARQNEG-ESRLDLVQRNVDIFKGIIPKLVK-YSPNAILLVVSNPVD---IMTYVAWKLSGLPKHR 140 (312)
T ss_pred -hCC--CCEEEECCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHH-hCCCcEEEEccChHH---HHHHHHHHHhCCCHHH
Confidence 777 8998643332 33 23 356677754 899999999999995 6666666653 1235
Q ss_pred EEecCCCC
Q 009519 466 VFASGSPF 473 (533)
Q Consensus 466 i~AtGSPf 473 (533)
+|++|.-.
T Consensus 141 viG~gt~L 148 (312)
T cd05293 141 VIGSGCNL 148 (312)
T ss_pred EEecCchH
Confidence 78887554
No 172
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=84.10 E-value=2.6 Score=43.58 Aligned_cols=99 Identities=14% Similarity=0.107 Sum_probs=53.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhh--ccccccCCcCC-ccCCCCH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA--PFAKDPGDFMG-LREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~--~~A~~~~~~~~-~~~~~~L 400 (533)
-||.|+|+|+.|.++|..|... |. ++.++|+..=- .+.+..... .+. +...... .....++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G~-------~V~~~~r~~~~---~~~i~~~~~~~~~~-~g~~~~~~~~~~~~~ 68 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----GV-------PVRLWARRPEF---AAALAAERENREYL-PGVALPAELYPTADP 68 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEeCCHHH---HHHHHHhCcccccC-CCCcCCCCeEEeCCH
Confidence 4899999999999999998864 32 57777773110 011111000 000 0000000 0112467
Q ss_pred HHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
.|+++. .|++|= +. +....+++++.+. +.-+|+-++|.
T Consensus 69 ~e~~~~--aD~Vi~-~v-~~~~~~~v~~~l~----~~~~vi~~~~G 106 (328)
T PRK14618 69 EEALAG--ADFAVV-AV-PSKALRETLAGLP----RALGYVSCAKG 106 (328)
T ss_pred HHHHcC--CCEEEE-EC-chHHHHHHHHhcC----cCCEEEEEeec
Confidence 888776 677652 22 2224577777663 34466667885
No 173
>PRK05442 malate dehydrogenase; Provisional
Probab=83.94 E-value=3.8 Score=43.26 Aligned_cols=135 Identities=19% Similarity=0.180 Sum_probs=78.4
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc--ccC-CCCCChhhhccccccCCcCCccCCCC
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKE-RKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi--~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
-||.|+|| |..|..+|-.|+.... .+. .+. ..|.|+|.+.-. ..+ .-+|.+...++-... . -..+
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~--~~~--~~~-~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~-~-----i~~~ 73 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDM--LGK--DQP-VILQLLEIPPALKALEGVVMELDDCAFPLLAGV-V-----ITDD 73 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhh--cCC--CCc-cEEEEEecCCcccccceeehhhhhhhhhhcCCc-E-----EecC
Confidence 58999998 9999999887776433 110 011 279999985321 111 123444332332211 1 1234
Q ss_pred HHHHhcccCCcEEEEecc---CCCC-----------CCHHHHHHhhhcCC-CCCeEEecCCCCCcccCCHHHHhcccCC-
Q 009519 400 LLEVVRKVKPHVLLGLSG---VGGV-----------FNEEVLKAMRESDS-VKPAIFAMSNPTMNAECTAADAFKHAGE- 463 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~---~~g~-----------Fteevv~~Ma~~~~-erPIIFaLSNPt~~aE~tpe~A~~wt~G- 463 (533)
..|.+++ .|++|=+.+ .+|- +=+++++.+++ ++ +..||+-.|||.. +..--+++++.|
T Consensus 74 ~y~~~~d--aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~-~~~~~~iiivvsNPvD---v~t~v~~k~s~g~ 147 (326)
T PRK05442 74 PNVAFKD--ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNE-VAARDVKVLVVGNPAN---TNALIAMKNAPDL 147 (326)
T ss_pred hHHHhCC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEeCCchH---HHHHHHHHHcCCC
Confidence 6677888 898873333 3441 22455666643 45 6999999999985 666677776522
Q ss_pred --cEEEecCCCCcce
Q 009519 464 --NIVFASGSPFENV 476 (533)
Q Consensus 464 --rai~AtGSPf~pv 476 (533)
+-||++ +-.+..
T Consensus 148 p~~rViG~-t~LDs~ 161 (326)
T PRK05442 148 PAENFTAM-TRLDHN 161 (326)
T ss_pred CHHHEEee-eHHHHH
Confidence 226676 444443
No 174
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.93 E-value=8.8 Score=40.38 Aligned_cols=136 Identities=17% Similarity=0.176 Sum_probs=79.5
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc--ccCC-CCCChhhhccccccCCcCCccCCCC
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi--~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
-||+|.|| |..|..+|..|+.. |+-..+....++++|.+.-. ..+. -++.+...++..+ . ....+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~-----~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~---~---~~~~~ 71 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKG-----DVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKS---V---VATTD 71 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----cccCCCCCcEEEEEEcCCccccccceeeehhhccccccCC---c---eecCC
Confidence 58999999 99999999987752 32100111379999985421 1111 1222211111111 0 12357
Q ss_pred HHHHhcccCCcEEEEeccCCCC--CC------------HHHHHHhhhcCC-CCCeEEecCCCCCcccCCHHHHhcccCC-
Q 009519 400 LLEVVRKVKPHVLLGLSGVGGV--FN------------EEVLKAMRESDS-VKPAIFAMSNPTMNAECTAADAFKHAGE- 463 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~g~--Ft------------eevv~~Ma~~~~-erPIIFaLSNPt~~aE~tpe~A~~wt~G- 463 (533)
+.+++++ +|++|=+.+.+.. -| +++++.|.+ ++ ..-||+-.|||.. +...-+++++.|
T Consensus 72 ~~~~l~~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~-~~~~~~iiivvsNPvD---~~t~~~~k~~~~~ 145 (325)
T cd01336 72 PEEAFKD--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDK-YAKKNVKVLVVGNPAN---TNALILLKYAPSI 145 (325)
T ss_pred HHHHhCC--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCeEEEEecCcHH---HHHHHHHHHcCCC
Confidence 8899988 9998855544321 22 566677754 64 6889999999985 666667666421
Q ss_pred -cEEEecCCCCcce
Q 009519 464 -NIVFASGSPFENV 476 (533)
Q Consensus 464 -rai~AtGSPf~pv 476 (533)
+-.|.||+=.+..
T Consensus 146 ~~~~ig~gt~LDs~ 159 (325)
T cd01336 146 PKENFTALTRLDHN 159 (325)
T ss_pred CHHHEEeeehHHHH
Confidence 1226777555544
No 175
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=83.71 E-value=8.1 Score=38.56 Aligned_cols=47 Identities=30% Similarity=0.452 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
+..+.|++..+.. .. .+++|+|+|+.|...+.+... .|. ++|+.+|+
T Consensus 107 ~ta~~al~~~~~~-~g---~~VlV~G~G~vG~~~~~~ak~-----~G~------~~Vi~~~~ 153 (280)
T TIGR03366 107 ATVMAALEAAGDL-KG---RRVLVVGAGMLGLTAAAAAAA-----AGA------ARVVAADP 153 (280)
T ss_pred HHHHHHHHhccCC-CC---CEEEEECCCHHHHHHHHHHHH-----cCC------CEEEEECC
Confidence 3445566655543 44 799999999877666554432 353 45877764
No 176
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.71 E-value=3.4 Score=43.14 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=++..+.+++. ++++|+|-+ ..|.-+|.||... | ..+.+|+|+
T Consensus 137 ~PcTp~avi~ll~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~-----~-------AtVtichs~----------- 190 (282)
T PRK14182 137 RPCTPAGVMRMLDEARVDPKG---KRALVVGRSNIVGKPMAMMLLER-----H-------ATVTIAHSR----------- 190 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCCcchHHHHHHHHHC-----C-------CEEEEeCCC-----------
Confidence 455778888888999988888 999999975 5788888887642 2 145555332
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.+++++|+
T Consensus 191 ------------------T~nl~~~~~~--ADIvI~AvGk~~~i~~~~ik 220 (282)
T PRK14182 191 ------------------TADLAGEVGR--ADILVAAIGKAELVKGAWVK 220 (282)
T ss_pred ------------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1347788888 99999999999999999998
No 177
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=83.66 E-value=0.86 Score=44.43 Aligned_cols=92 Identities=20% Similarity=0.318 Sum_probs=57.0
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCcc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
++|++ .||+|+|+|.-|.-+|+.|+.+++ ++|.++|.+-+ .. .+|+.+ .|.+.. + -|.+
T Consensus 17 ~~L~~---s~VlIiG~gglG~evak~La~~GV-----------g~i~lvD~d~v-e~--snL~rq--fl~~~~-d-iG~~ 75 (197)
T cd01492 17 KRLRS---ARILLIGLKGLGAEIAKNLVLSGI-----------GSLTILDDRTV-TE--EDLGAQ--FLIPAE-D-LGQN 75 (197)
T ss_pred HHHHh---CcEEEEcCCHHHHHHHHHHHHcCC-----------CEEEEEECCcc-cH--hhCCCC--ccccHH-H-cCch
Confidence 44556 999999999999999999987654 69999998732 22 234321 122211 1 1111
Q ss_pred CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHh
Q 009519 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAM 430 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~M 430 (533)
....+.+.++...|++-|=... ..+++...+.+
T Consensus 76 Ka~a~~~~L~~lNp~v~i~~~~--~~~~~~~~~~~ 108 (197)
T cd01492 76 RAEASLERLRALNPRVKVSVDT--DDISEKPEEFF 108 (197)
T ss_pred HHHHHHHHHHHHCCCCEEEEEe--cCccccHHHHH
Confidence 2245788888899998775543 23344333334
No 178
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=83.36 E-value=2 Score=43.44 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.|++.+++..+...+. .+++|+|+|.+|.+++..+.+. | .+++++|+
T Consensus 102 ~G~~~~l~~~~~~~~~---k~vliiGaGg~g~aia~~L~~~-----g-------~~v~v~~R 148 (270)
T TIGR00507 102 IGLVSDLERLIPLRPN---QRVLIIGAGGAARAVALPLLKA-----D-------CNVIIANR 148 (270)
T ss_pred HHHHHHHHhcCCCccC---CEEEEEcCcHHHHHHHHHHHHC-----C-------CEEEEEeC
Confidence 3466666654444455 7999999998888888777642 3 26888876
No 179
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.32 E-value=3.6 Score=42.96 Aligned_cols=130 Identities=17% Similarity=0.221 Sum_probs=86.3
Q ss_pred HHHHHHHHHhC--CC---ceeeee---cCCCchHHHHHHHHhcc--C------ceeccCcchhHHHHHHHHHHHHHHhCC
Q 009519 253 DEFMEAVHARW--PK---AIVQFE---DFQMKWAFETLERYRKR--F------CMFNDDIQGTAGVALAGLLGTVRAQGL 316 (533)
Q Consensus 253 defv~av~~~~--P~---~~I~~E---Df~~~~af~iL~ryr~~--~------~~FnDDiQGTaaV~LAgli~Alr~~g~ 316 (533)
+||.+.+++.- |+ .++|+= .+.....++.+.-.+|- + ..|..|..+=.-+|-.|++.=++-.+.
T Consensus 75 ~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~KDVDGl~~~n~g~l~~g~~~~~~PcTp~aii~lL~~y~i 154 (282)
T PRK14180 75 SELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGI 154 (282)
T ss_pred HHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCccccccccChhhHHHHhcCCCCCcCCCCHHHHHHHHHHhCC
Confidence 56777777764 54 256643 44444444433333331 1 122222233456688888888999999
Q ss_pred CCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCcc
Q 009519 317 SLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 317 ~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
+++. .++||+|.+ ..|.-+|.||.. .|. .+.+|+++
T Consensus 155 ~l~G---k~vvViGrS~~VGkPla~lL~~-----~~A-------TVt~chs~---------------------------- 191 (282)
T PRK14180 155 KTEG---AYAVVVGASNVVGKPVSQLLLN-----AKA-------TVTTCHRF---------------------------- 191 (282)
T ss_pred CCCC---CEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEEcCC----------------------------
Confidence 9988 999999975 578888888864 232 45666542
Q ss_pred CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|++++|+
T Consensus 192 -T~dl~~~~k~--ADIvIsAvGkp~~i~~~~vk 221 (282)
T PRK14180 192 -TTDLKSHTTK--ADILIVAVGKPNFITADMVK 221 (282)
T ss_pred -CCCHHHHhhh--cCEEEEccCCcCcCCHHHcC
Confidence 1247777777 99999999999999999888
No 180
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=83.22 E-value=0.92 Score=52.17 Aligned_cols=38 Identities=18% Similarity=0.442 Sum_probs=32.7
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
|++.||+|+|||.-|.-+|+.|+.+++ ++|.+||.+-+
T Consensus 336 L~~~kVLIvGaGGLGs~VA~~La~~GV-----------g~ItlVD~D~V 373 (664)
T TIGR01381 336 YSQLKVLLLGAGTLGCNVARCLIGWGV-----------RHITFVDNGKV 373 (664)
T ss_pred HhcCeEEEECCcHHHHHHHHHHHHcCC-----------CeEEEEcCCEE
Confidence 334999999999999999999998866 69999998644
No 181
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=83.19 E-value=1 Score=46.78 Aligned_cols=118 Identities=14% Similarity=0.240 Sum_probs=66.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||+|+|+|..|.-||+.|+.+++ ++|.++|.+= +.. .+|+.. -|.+.. +. +........+-
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGV-----------g~itI~D~d~-ve~--snL~rq--f~~~~~-dI-Gk~Kaea~~~~ 81 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGV-----------KSVTLHDTKP-CSW--SDLSSQ--FYLREE-DI-GKNRAEASQAR 81 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCC-----------CeEEEEcCCc-cch--hhcccC--ccCChH-Hh-CHHHHHHHHHH
Confidence 899999999999999999988755 6999999872 222 234321 122211 10 10111235556
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASG 470 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtG 470 (533)
++...|.|-|=+.. +.++++.++.. +=||.+..|+..+. .-. .+-+..+..++.++
T Consensus 82 L~eLNp~V~V~~~~--~~~~~~~l~~f------dvVV~~~~~~~~~~--~in-~~c~~~~ipfI~a~ 137 (286)
T cd01491 82 LAELNPYVPVTVST--GPLTTDELLKF------QVVVLTDASLEDQL--KIN-EFCHSPGIKFISAD 137 (286)
T ss_pred HHHHCCCCEEEEEe--ccCCHHHHhcC------CEEEEecCCHHHHH--HHH-HHHHHcCCEEEEEe
Confidence 66777777765543 33677766543 34555555443321 111 22344566666554
No 182
>PRK14851 hypothetical protein; Provisional
Probab=83.17 E-value=3.1 Score=48.19 Aligned_cols=125 Identities=19% Similarity=0.248 Sum_probs=77.6
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC--CC------CCChhhhcccc-
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RK------NLDPAAAPFAK- 386 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~--r~------~l~~~k~~~A~- 386 (533)
++|++ .||+|+|+|..|..+|+.|+.+++ .+|.++|-+=+-..+ |. ++-..|..-+.
T Consensus 39 ~kL~~---~~VlIvG~GGlGs~va~~Lar~GV-----------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~ 104 (679)
T PRK14851 39 ERLAE---AKVAIPGMGGVGGVHLITMVRTGI-----------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKE 104 (679)
T ss_pred HHHhc---CeEEEECcCHHHHHHHHHHHHhCC-----------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHH
Confidence 45566 999999999999999999988755 689999986432221 21 22223332222
Q ss_pred ---ccCC-c--CCcc---CCCCHHHHhcccCCcEEEEeccCCCCCC---HHHHHHhhhcCCCCCeEEecC----------
Q 009519 387 ---DPGD-F--MGLR---EGASLLEVVRKVKPHVLLGLSGVGGVFN---EEVLKAMRESDSVKPAIFAMS---------- 444 (533)
Q Consensus 387 ---~~~~-~--~~~~---~~~~L~e~V~~vkptvLIG~S~~~g~Ft---eevv~~Ma~~~~erPIIFaLS---------- 444 (533)
.-++ . .... ...++.+.+++ .|++|-.. ..|+ +..|...|. .+..|+|++-.
T Consensus 105 ~l~~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~---D~~~~~~r~~l~~~c~-~~~iP~i~~g~~G~~g~~~~~ 178 (679)
T PRK14851 105 QALSINPFLEITPFPAGINADNMDAFLDG--VDVVLDGL---DFFQFEIRRTLFNMAR-EKGIPVITAGPLGYSSAMLVF 178 (679)
T ss_pred HHHHhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECC---CCCcHHHHHHHHHHHH-HCCCCEEEeecccccceEEEE
Confidence 1111 0 0001 12356777776 89988544 3333 345665554 56799998754
Q ss_pred CCCCcccCCHHHHhcccCC
Q 009519 445 NPTMNAECTAADAFKHAGE 463 (533)
Q Consensus 445 NPt~~aE~tpe~A~~wt~G 463 (533)
+|. ....++.|.+.++
T Consensus 179 ~p~---~~~~~~~~~~~~~ 194 (679)
T PRK14851 179 TPQ---GMGFDDYFNIGGK 194 (679)
T ss_pred cCC---CCCHhHhccCCCC
Confidence 665 4778888888776
No 183
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=83.16 E-value=0.96 Score=48.08 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=31.9
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|++ .||+|+|+|..|..||..|+.+++ ++|.++|.+
T Consensus 132 ~l~~---~~VlvvG~GG~Gs~ia~~La~~Gv-----------g~i~lvD~d 168 (376)
T PRK08762 132 RLLE---ARVLLIGAGGLGSPAALYLAAAGV-----------GTLGIVDHD 168 (376)
T ss_pred HHhc---CcEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCC
Confidence 4566 999999999999999999987654 689999986
No 184
>PRK06153 hypothetical protein; Provisional
Probab=83.12 E-value=1.3 Score=48.21 Aligned_cols=93 Identities=13% Similarity=0.217 Sum_probs=53.7
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCcc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
.+|++ .||+|+|+|..|.-|+++|+.+.+ ++|.++|-+=+ . ..+|+.+--.|-..+-. +...
T Consensus 172 ~kL~~---~~VaIVG~GG~GS~Va~~LAR~GV-----------geI~LVD~D~V-e--~SNLnRQ~gaf~~~DvG-k~~~ 233 (393)
T PRK06153 172 AKLEG---QRIAIIGLGGTGSYILDLVAKTPV-----------REIHLFDGDDF-L--QHNAFRSPGAASIEELR-EAPK 233 (393)
T ss_pred HHHhh---CcEEEEcCCccHHHHHHHHHHcCC-----------CEEEEECCCEe-c--ccccccccccCCHhHcC-Ccch
Confidence 45666 999999999999999999988754 68999998732 2 12343321011111000 0000
Q ss_pred CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHh
Q 009519 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAM 430 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~M 430 (533)
...-+.+.++...+.+ ...+..++++-+..+
T Consensus 234 KVevaa~rl~~in~~I----~~~~~~I~~~n~~~L 264 (393)
T PRK06153 234 KVDYFKSRYSNMRRGI----VPHPEYIDEDNVDEL 264 (393)
T ss_pred HHHHHHHHHHHhCCeE----EEEeecCCHHHHHHh
Confidence 1123555555555543 334455677777655
No 185
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=83.05 E-value=38 Score=36.85 Aligned_cols=220 Identities=19% Similarity=0.186 Sum_probs=124.7
Q ss_pred HhCCCc-eeeeecCCCchHHHHHHHHhccCceeccCc---chhHHHHHHHHHHHHHHh---------C---C---CCCCC
Q 009519 261 ARWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G---L---SLTDF 321 (533)
Q Consensus 261 ~~~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDDi---QGTaaV~LAgli~Alr~~---------g---~---~l~dl 321 (533)
...|+. .|+.-=.+..| ..+..--+.-++|+|--- ..+|=-+++.+++.+|-. | + .-.+|
T Consensus 71 ~~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L 149 (409)
T PRK11790 71 AAAEKLVAIGCFCIGTNQ-VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEV 149 (409)
T ss_pred hhCCCCeEEEECceeccc-ccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccC
Confidence 345665 66665555554 333333334589998532 335556788888887732 1 0 11345
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHH
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLL 401 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~ 401 (533)
.+.++.|+|.|..|..+|+.+... |+ +++.+|+.. +.... .+ ....+|.
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~f-----Gm-------~V~~~d~~~-----~~~~~-----~~---------~~~~~l~ 198 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESL-----GM-------RVYFYDIED-----KLPLG-----NA---------RQVGSLE 198 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCCc-----ccccC-----Cc---------eecCCHH
Confidence 559999999999999999988754 43 688888631 00000 00 0124799
Q ss_pred HHhcccCCcEEEEec----cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCC-Ccce
Q 009519 402 EVVRKVKPHVLLGLS----GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSP-FENV 476 (533)
Q Consensus 402 e~V~~vkptvLIG~S----~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSP-f~pv 476 (533)
|+++. .|+++=.- ..-+.|+++.+..|. +..++.-.|.-.---|-.-.+|++ +|+ |.+.|.= |++-
T Consensus 199 ell~~--sDiVslh~Plt~~T~~li~~~~l~~mk----~ga~lIN~aRG~~vde~aL~~aL~--~g~-i~gaalDVf~~E 269 (409)
T PRK11790 199 ELLAQ--SDVVSLHVPETPSTKNMIGAEELALMK----PGAILINASRGTVVDIDALADALK--SGH-LAGAAIDVFPVE 269 (409)
T ss_pred HHHhh--CCEEEEcCCCChHHhhccCHHHHhcCC----CCeEEEECCCCcccCHHHHHHHHH--cCC-ceEEEEcCCCCC
Confidence 99988 89877321 113799999999993 567877777544322222334444 566 4433321 2211
Q ss_pred ecCCCe--eeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhccc
Q 009519 477 DLGNGK--IGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDN 526 (533)
Q Consensus 477 ~~~~G~--~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v 526 (533)
..+... ...--+..|+++-|=+|-....+. ..|...+++.+.+..
T Consensus 270 P~~~~~~~~~pL~~~~nvilTPHia~~t~ea~-----~~~~~~~~~nl~~~~ 316 (409)
T PRK11790 270 PKSNGDPFESPLRGLDNVILTPHIGGSTQEAQ-----ENIGLEVAGKLVKYS 316 (409)
T ss_pred CCCccccccchhhcCCCEEECCcCCCCHHHHH-----HHHHHHHHHHHHHHH
Confidence 111000 011234578999999885433322 344455555555443
No 186
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.03 E-value=3.6 Score=43.05 Aligned_cols=83 Identities=20% Similarity=0.339 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=++-.+.+++. .++||+|.+ ..|.-+|.||.. +|. .+.+|.|+
T Consensus 135 ~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~-----~~a-------TVtichs~----------- 188 (287)
T PRK14173 135 EPCTPAGVVRLLKHYGIPLAG---KEVVVVGRSNIVGKPLAALLLR-----EDA-------TVTLAHSK----------- 188 (287)
T ss_pred CCCCHHHHHHHHHHcCCCCCC---CEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEeCCC-----------
Confidence 355777888888888998888 999999975 678888888864 232 45556432
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.+++++|+
T Consensus 189 ------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~vk 218 (287)
T PRK14173 189 ------------------TQDLPAVTRR--ADVLVVAVGRPHLITPEMVR 218 (287)
T ss_pred ------------------CCCHHHHHhh--CCEEEEecCCcCccCHHHcC
Confidence 1247888888 99999999999999999997
No 187
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.87 E-value=3.6 Score=43.01 Aligned_cols=89 Identities=18% Similarity=0.331 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCC
Q 009519 298 GTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKN 376 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~ 376 (533)
+=.-+|-.|++.=++-.|.+++. +++||+|-+ ..|.-+|.||... |-+. . ..+.+|.|+
T Consensus 131 ~~~PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~-----~~~~-~--AtVtvchs~--------- 190 (287)
T PRK14181 131 GFIPCTPAGIIELLKYYEIPLHG---RHVAIVGRSNIVGKPLAALLMQK-----HPDT-N--ATVTLLHSQ--------- 190 (287)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHhC-----cCCC-C--CEEEEeCCC---------
Confidence 33456778888888999999988 999999975 5788888888642 1100 0 134444331
Q ss_pred CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 377 LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 377 l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..++++.+++|+|+
T Consensus 191 --------------------T~~l~~~~~~--ADIvV~AvG~p~~i~~~~ik 220 (287)
T PRK14181 191 --------------------SENLTEILKT--ADIIIAAIGVPLFIKEEMIA 220 (287)
T ss_pred --------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1348888888 99999999999999999998
No 188
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=82.70 E-value=1.9 Score=47.61 Aligned_cols=47 Identities=23% Similarity=0.593 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.|++.+++..+.++++ .+++|+|+|.+|.+++..+.+ .|. +++++|+
T Consensus 317 ~G~~~~l~~~~~~~~~---k~vlIiGaGgiG~aia~~L~~-----~G~-------~V~i~~R 363 (477)
T PRK09310 317 EGLFSLLKQKNIPLNN---QHVAIVGAGGAAKAIATTLAR-----AGA-------ELLIFNR 363 (477)
T ss_pred HHHHHHHHhcCCCcCC---CEEEEEcCcHHHHHHHHHHHH-----CCC-------EEEEEeC
Confidence 3588888887888877 999999999888877777764 342 5777775
No 189
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=82.46 E-value=3.6 Score=43.54 Aligned_cols=117 Identities=21% Similarity=0.332 Sum_probs=70.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-CccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~-GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|||..|...|-+|+. .++. +.+.|+|.. +...-..-+|.+.....-.+.. .. ...+ .+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~-----~~~~-----~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~-i~---~~~~-y~ 65 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLL-----QGLG-----SELVLIDINEEKAEGVALDLSHAAAPLGSDVK-IT---GDGD-YE 65 (313)
T ss_pred CeEEEECCChHHHHHHHHHhc-----cccc-----ceEEEEEcccccccchhcchhhcchhccCceE-Ee---cCCC-hh
Confidence 389999999999999998843 3443 379999987 1111111234332211111111 00 1123 45
Q ss_pred HhcccCCcEEE---EeccCCC-----------CCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc
Q 009519 403 VVRKVKPHVLL---GLSGVGG-----------VFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA 461 (533)
Q Consensus 403 ~V~~vkptvLI---G~S~~~g-----------~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt 461 (533)
.+++ .|+.| |+...|| -+-+++.+.+++ .+++.||+-.|||.. ++.--+++.+
T Consensus 66 ~~~~--aDiVvitAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~-~~~d~ivlVvtNPvD---~~ty~~~k~s 132 (313)
T COG0039 66 DLKG--ADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAK-YAPDAIVLVVTNPVD---ILTYIAMKFS 132 (313)
T ss_pred hhcC--CCEEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHh-hCCCeEEEEecCcHH---HHHHHHHHhc
Confidence 5777 88876 3344455 244677788864 889999999999985 4555555543
No 190
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.33 E-value=2.7 Score=43.34 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=25.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||.|+|||+.|..+|..|.+. | .++.+++++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-----g-------~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-----K-------ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-----C-------CeEEEEecC
Confidence 699999999999999998764 3 357777774
No 191
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=82.17 E-value=1 Score=50.53 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=37.9
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC--CCCCChh
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--RKNLDPA 380 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~--r~~l~~~ 380 (533)
+.+.|++++|||+-|++||+-|+.+++ ++|.+||.--+-+.+ |..|-.+
T Consensus 338 is~~KcLLLGAGTLGC~VAR~Ll~WGv-----------RhITFvDn~kVsySNPVRQsLy~F 388 (669)
T KOG2337|consen 338 ISQTKCLLLGAGTLGCNVARNLLGWGV-----------RHITFVDNGKVSYSNPVRQSLYTF 388 (669)
T ss_pred hhcceeEEecCcccchHHHHHHHhhcc-----------ceEEEEecCeeeccchhhhhhhhh
Confidence 446999999999999999999999988 699999985443333 3345444
No 192
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=82.17 E-value=6.1 Score=40.48 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=26.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|..+|..+... |.. .+++++|++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-----g~~-----~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-----GLA-----GEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CCC-----cEEEEEECC
Confidence 6899999999999999888653 431 368888874
No 193
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.79 E-value=3.9 Score=42.95 Aligned_cols=95 Identities=16% Similarity=0.269 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh
Q 009519 301 GVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP 379 (533)
Q Consensus 301 aV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~ 379 (533)
-+|-.|++.=++..+.+++. ++++|+|.+ .-|.-+|.||..... ..+ ..+.+|.|+
T Consensus 138 PcTp~avi~lL~~~~i~l~G---k~vvViGrS~iVGkPla~lL~~~~~-~~~-------aTVtvchs~------------ 194 (297)
T PRK14167 138 PCTPHGIQKLLAAAGVDTEG---ADVVVVGRSDIVGKPMANLLIQKAD-GGN-------ATVTVCHSR------------ 194 (297)
T ss_pred CCCHHHHHHHHHHhCCCCCC---CEEEEECCCcccHHHHHHHHhcCcc-CCC-------CEEEEeCCC------------
Confidence 46778888888888998888 999999975 578888888864211 001 134445432
Q ss_pred hhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 380 AAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 380 ~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
..+|.+.+++ +|++|-..+.++.++.++|+ +.-||+=-.
T Consensus 195 -----------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik-------~gaiVIDvG 233 (297)
T PRK14167 195 -----------------TDDLAAKTRR--ADIVVAAAGVPELIDGSMLS-------EGATVIDVG 233 (297)
T ss_pred -----------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC-------CCCEEEEcc
Confidence 1348888888 99999999999999999988 455665443
No 194
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=81.76 E-value=1.3 Score=47.01 Aligned_cols=39 Identities=33% Similarity=0.466 Sum_probs=32.8
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
++|++ .||+|+|+|..|.-+|+.|+.+++ ++|.++|.+=
T Consensus 24 ~~L~~---~~VlivG~GGlGs~~a~~La~~Gv-----------g~i~lvD~D~ 62 (355)
T PRK05597 24 QSLFD---AKVAVIGAGGLGSPALLYLAGAGV-----------GHITIIDDDT 62 (355)
T ss_pred HHHhC---CeEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCCE
Confidence 44566 999999999999999999987644 6899999873
No 195
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=81.51 E-value=4 Score=44.11 Aligned_cols=83 Identities=11% Similarity=0.231 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=|+..+.+++. +++||+|-+ ..|.-+|.||... | ..+.+|.++
T Consensus 211 ~PCTp~avielL~~y~i~l~G---K~vvVIGRS~iVGkPLa~LL~~~-----~-------ATVTicHs~----------- 264 (364)
T PLN02616 211 VPCTPKGCIELLHRYNVEIKG---KRAVVIGRSNIVGMPAALLLQRE-----D-------ATVSIVHSR----------- 264 (364)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccccHHHHHHHHHC-----C-------CeEEEeCCC-----------
Confidence 455677788888889998888 999999975 5788888887652 3 246666432
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-.-+.++.++.|+||
T Consensus 265 ------------------T~nl~~~~r~--ADIVIsAvGkp~~i~~d~vK 294 (364)
T PLN02616 265 ------------------TKNPEEITRE--ADIIISAVGQPNMVRGSWIK 294 (364)
T ss_pred ------------------CCCHHHHHhh--CCEEEEcCCCcCcCCHHHcC
Confidence 1348888888 99999999999999999998
No 196
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=81.44 E-value=33 Score=36.01 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=92.0
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
+|..+++.|+|.|..|..+|+.+..+ |+ +++.+|+.. .. .+... .+. ...+
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~af-----G~-------~V~~~~~~~----~~--~~~~~-~~~----------~~~~ 183 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTW-----GF-------PLRCWSRSR----KS--WPGVQ-SFA----------GREE 183 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCC----CC--CCCce-eec----------cccc
Confidence 44559999999999999999999865 43 677787631 11 11000 110 1246
Q ss_pred HHHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHh--cccCCcEEEecCCCC
Q 009519 400 LLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF--KHAGENIVFASGSPF 473 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~--~wt~Grai~AtGSPf 473 (533)
|.|+++. .|+++=.-. .-+.|+++.++.|. +..++.=.|. .++--|+|+ ....|+.--|.--=|
T Consensus 184 l~e~l~~--aDvvv~~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aR----G~vVde~aL~~aL~~g~i~gaalDVf 253 (312)
T PRK15469 184 LSAFLSQ--TRVLINLLPNTPETVGIINQQLLEQLP----DGAYLLNLAR----GVHVVEDDLLAALDSGKVKGAMLDVF 253 (312)
T ss_pred HHHHHhc--CCEEEECCCCCHHHHHHhHHHHHhcCC----CCcEEEECCC----ccccCHHHHHHHHhcCCeeeEEecCC
Confidence 9999988 898873211 12778999999993 5667776664 344444443 223666443332223
Q ss_pred cceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCC
Q 009519 474 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNE 529 (533)
Q Consensus 474 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~ 529 (533)
++-..+.. ..--+..|+++-|=++-.. . .+.|...+++-+-.....+
T Consensus 254 ~~EPl~~~--~pl~~~~nvi~TPHiag~t------~-~~~~~~~~~~n~~~~~~g~ 300 (312)
T PRK15469 254 SREPLPPE--SPLWQHPRVAITPHVAAVT------R-PAEAVEYISRTIAQLEKGE 300 (312)
T ss_pred CCCCCCCC--ChhhcCCCeEECCcCCCCc------C-HHHHHHHHHHHHHHHHcCC
Confidence 32222211 1112467999999887322 1 2345555555544444333
No 197
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=81.25 E-value=4.7 Score=42.13 Aligned_cols=131 Identities=18% Similarity=0.281 Sum_probs=77.7
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+|||..|..+|..|+. .|+- +.+.|+|.+-=..++. -+|.+.. .|....+ .. -...+ .+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~~-----~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~-~~--i~~~~-y~~ 65 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGLF-----SEIVLIDVNEGVAEGEALDFHHAT-ALTYSTN-TK--IRAGD-YDD 65 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCcchhhHHHHHHHhhh-ccCCCCC-EE--EEECC-HHH
Confidence 78999999999999998775 2443 4799999731111111 1333322 2221000 00 01123 466
Q ss_pred hcccCCcEEEEeccC---CCC-------------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--CcE
Q 009519 404 VRKVKPHVLLGLSGV---GGV-------------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENI 465 (533)
Q Consensus 404 V~~vkptvLIG~S~~---~g~-------------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--Gra 465 (533)
+++ .|++|=+.+. +|- +=+++++.+.+ ++...|++-.|||.. +...-+++++. =+-
T Consensus 66 ~~~--aDivvitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~-~~p~~i~ivvsNPvD---v~t~~~~k~sg~p~~r 139 (307)
T cd05290 66 CAD--ADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITK-VTKEAVIILITNPLD---IAVYIAATEFDYPANK 139 (307)
T ss_pred hCC--CCEEEECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEecCcHH---HHHHHHHHHhCcChhh
Confidence 777 8988744443 342 12467777754 889999999999984 66666666541 234
Q ss_pred EEecCCCCcce
Q 009519 466 VFASGSPFENV 476 (533)
Q Consensus 466 i~AtGSPf~pv 476 (533)
+|.||.=.+..
T Consensus 140 viG~gt~LDs~ 150 (307)
T cd05290 140 VIGTGTMLDTA 150 (307)
T ss_pred eecccchHHHH
Confidence 77887554443
No 198
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=81.00 E-value=1.5 Score=40.92 Aligned_cols=30 Identities=30% Similarity=0.634 Sum_probs=21.2
Q ss_pred EEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 327 v~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|+|||.||+..|..|.+. |+ +++.++|+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-----g~------~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-----GI------DPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-----T---------EEEEESS
T ss_pred CEECcCHHHHHHHHHHHhC-----CC------CcEEEEeCC
Confidence 6899999999999888654 55 348899987
No 199
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=80.80 E-value=7.3 Score=38.78 Aligned_cols=121 Identities=17% Similarity=0.209 Sum_probs=69.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||.|+|+|..|..+|..+.+. |.. ..+++++|++. +.....+..| .- ....+..++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~~----~~~v~v~~r~~------~~~~~~~~~~---g~-----~~~~~~~~~ 59 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GVP----AKDIIVSDPSP------EKRAALAEEY---GV-----RAATDNQEA 59 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CCC----cceEEEEcCCH------HHHHHHHHhc---CC-----eecCChHHH
Confidence 5799999999999999988653 321 14677777631 1111111111 00 012456777
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC-CcEEEecCCCCcceecC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG-ENIVFASGSPFENVDLG 479 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~-Grai~AtGSPf~pv~~~ 479 (533)
++. +|++| ++. +....+++++.+.. +. ..+|..++|-++. ++.-+|.. |..+ ...-|..|..+.
T Consensus 60 ~~~--advVi-l~v-~~~~~~~v~~~l~~-~~-~~~vvs~~~gi~~-----~~l~~~~~~~~~i-v~~~P~~p~~~~ 124 (267)
T PRK11880 60 AQE--ADVVV-LAV-KPQVMEEVLSELKG-QL-DKLVVSIAAGVTL-----ARLERLLGADLPV-VRAMPNTPALVG 124 (267)
T ss_pred Hhc--CCEEE-EEc-CHHHHHHHHHHHHh-hc-CCEEEEecCCCCH-----HHHHHhcCCCCcE-EEecCCchHHHc
Confidence 765 78766 443 44457788888854 22 3588889987763 33334443 3233 335676666553
No 200
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=80.61 E-value=1.4 Score=46.94 Aligned_cols=107 Identities=24% Similarity=0.370 Sum_probs=69.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
-||+|+|.|-+|+--|++.+- +. .++.+.|.+ .+| |......|..+-.-.. .....++|+
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~g-------lg-----A~Vtild~n----~~r--l~~ldd~f~~rv~~~~--st~~~iee~ 228 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIG-------LG-----ADVTILDLN----IDR--LRQLDDLFGGRVHTLY--STPSNIEEA 228 (371)
T ss_pred ccEEEECCccccchHHHHHhc-------cC-----CeeEEEecC----HHH--HhhhhHhhCceeEEEE--cCHHHHHHH
Confidence 799999999999999887654 32 367778763 222 4444444443210000 012459999
Q ss_pred hcccCCcEEEEec-----cCCCCCCHHHHHHhhhcCCCCCeE----------EecCCCCCcccCCHHH
Q 009519 404 VRKVKPHVLLGLS-----GVGGVFNEEVLKAMRESDSVKPAI----------FAMSNPTMNAECTAAD 456 (533)
Q Consensus 404 V~~vkptvLIG~S-----~~~g~Fteevv~~Ma~~~~erPII----------FaLSNPt~~aE~tpe~ 456 (533)
|++ .|.+||.= ..|.+.|+|+++.|. +-.+| |-=|.||+.++-|.+.
T Consensus 229 v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mk----pGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 229 VKK--ADLVIGAVLIPGAKAPKLVTREMVKQMK----PGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred hhh--ccEEEEEEEecCCCCceehhHHHHHhcC----CCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 987 99999873 345679999999994 33443 5556777766666543
No 201
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=80.43 E-value=5.4 Score=41.94 Aligned_cols=131 Identities=21% Similarity=0.287 Sum_probs=78.4
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
||.|+|| |..|..+|.+|+. .|+- ..+.|+|.+. ..+. -+|.+.. ... ...+.....++.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~~-----~elvL~Di~~--a~g~a~DL~~~~----~~~-~i~~~~~~~~~~~ 63 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPYV-----SELSLYDIAG--AAGVAADLSHIP----TAA-SVKGFSGEEGLEN 63 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCCC-----cEEEEecCCC--CcEEEchhhcCC----cCc-eEEEecCCCchHH
Confidence 7899999 9999999998754 2442 5799999876 2221 2344322 110 0000001124778
Q ss_pred HhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCC-cccCCHHHHhcccC--CcE
Q 009519 403 VVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADAFKHAG--ENI 465 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~-~aE~tpe~A~~wt~--Gra 465 (533)
++++ .|++|=+.+.+ |- .=+++.+.+.+ +++..||+-.|||.. ++.+..+-+++++. =+-
T Consensus 64 ~~~d--aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~-~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~r 140 (312)
T TIGR01772 64 ALKG--ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAE-SCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNK 140 (312)
T ss_pred HcCC--CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHH-hCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHH
Confidence 8988 89887444433 31 22455666643 789999999999995 22235556665431 123
Q ss_pred EEecCCCCcce
Q 009519 466 VFASGSPFENV 476 (533)
Q Consensus 466 i~AtGSPf~pv 476 (533)
+|++|. .+..
T Consensus 141 ViG~g~-LDsa 150 (312)
T TIGR01772 141 LFGVTT-LDIV 150 (312)
T ss_pred EEeeec-chHH
Confidence 788885 5533
No 202
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=80.40 E-value=1.5 Score=40.84 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=54.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||-|+|.|..|.+||+.|... |. +++..|+. . +.-+.+.+... ....|+.|+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~-----g~-------~v~~~d~~----~------~~~~~~~~~g~-----~~~~s~~e~ 54 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKA-----GY-------EVTVYDRS----P------EKAEALAEAGA-----EVADSPAEA 54 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHT-----TT-------EEEEEESS----H------HHHHHHHHTTE-----EEESSHHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhc-----CC-------eEEeeccc----h------hhhhhhHHhhh-----hhhhhhhhH
Confidence 5899999999999999999653 43 68888752 1 11122332211 124689999
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHH--hhhcCCCCCeEEecCCCCC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKA--MRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~--Ma~~~~erPIIFaLSNPt~ 448 (533)
++. .|++|=+-. .+.=.++++.. +.+...+..||.=+|+-.+
T Consensus 55 ~~~--~dvvi~~v~-~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p 98 (163)
T PF03446_consen 55 AEQ--ADVVILCVP-DDDAVEAVLFGENILAGLRPGKIIIDMSTISP 98 (163)
T ss_dssp HHH--BSEEEE-SS-SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--H
T ss_pred hhc--ccceEeecc-cchhhhhhhhhhHHhhccccceEEEecCCcch
Confidence 998 687774321 22334555554 4333567778888887666
No 203
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.35 E-value=5.1 Score=42.13 Aligned_cols=83 Identities=22% Similarity=0.364 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=++..|.+++. +++||+|.+ ..|.-+|.||.. .|. .+.+|.|+
T Consensus 138 ~PcTp~aii~lL~~~~i~l~G---k~vvVIGrS~iVGkPla~lL~~-----~~a-------tVtv~hs~----------- 191 (297)
T PRK14186 138 RSCTPAGVMRLLRSQQIDIAG---KKAVVVGRSILVGKPLALMLLA-----ANA-------TVTIAHSR----------- 191 (297)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC-----------
Confidence 346777888888889998888 999999975 578888888864 232 45555332
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 192 ------------------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (297)
T PRK14186 192 ------------------TQDLASITRE--ADILVAAAGRPNLIGAEMVK 221 (297)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1348888888 99999999999999999998
No 204
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=80.31 E-value=19 Score=36.99 Aligned_cols=118 Identities=15% Similarity=0.156 Sum_probs=58.8
Q ss_pred HHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccc
Q 009519 308 LGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD 387 (533)
Q Consensus 308 i~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~ 387 (533)
+.|++..+.. .. ++++|.|+|+.|...+.+... .|. ++++.+|+. +.+..+|+.
T Consensus 159 ~~al~~~~~~-~g---~~VlV~G~G~vG~~aiqlak~-----~G~------~~Vi~~~~~-----------~~~~~~a~~ 212 (343)
T PRK09880 159 IHAAHQAGDL-QG---KRVFVSGVGPIGCLIVAAVKT-----LGA------AEIVCADVS-----------PRSLSLARE 212 (343)
T ss_pred HHHHHhcCCC-CC---CEEEEECCCHHHHHHHHHHHH-----cCC------cEEEEEeCC-----------HHHHHHHHH
Confidence 5555554433 45 799999999887776654443 243 468777652 222233332
Q ss_pred cC--C-cCCccCCCCHHHHhccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHh
Q 009519 388 PG--D-FMGLREGASLLEVVRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF 458 (533)
Q Consensus 388 ~~--~-~~~~~~~~~L~e~V~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~ 458 (533)
-. . +. ....++.+.++.- ++|++|=+++.+ ..-++.++.|+ ..-+=+++.+ +....+..+.+.+
T Consensus 213 lGa~~vi~--~~~~~~~~~~~~~g~~D~vid~~G~~-~~~~~~~~~l~--~~G~iv~~G~--~~~~~~~~~~~~~ 280 (343)
T PRK09880 213 MGADKLVN--PQNDDLDHYKAEKGYFDVSFEVSGHP-SSINTCLEVTR--AKGVMVQVGM--GGAPPEFPMMTLI 280 (343)
T ss_pred cCCcEEec--CCcccHHHHhccCCCCCEEEECCCCH-HHHHHHHHHhh--cCCEEEEEcc--CCCCCccCHHHHH
Confidence 10 0 00 0112345544322 378888777532 23355667764 2333333333 3233355555543
No 205
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.85 E-value=5.2 Score=41.98 Aligned_cols=87 Identities=13% Similarity=0.205 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=++-.+.+++. +++||+|.+ ..|.-+|.||.. .|.+. . -.+.+|.|+
T Consensus 137 ~PcTp~av~~lL~~~~i~l~G---K~vvViGrS~iVGkPla~lL~~-----~~~~~-~--aTVtvchs~----------- 194 (293)
T PRK14185 137 VSATPNGILELLKRYHIETSG---KKCVVLGRSNIVGKPMAQLMMQ-----KAYPG-D--CTVTVCHSR----------- 194 (293)
T ss_pred CCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccchHHHHHHHHc-----CCCCC-C--CEEEEecCC-----------
Confidence 345777888888888988888 999999985 578888888764 22110 0 134444432
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..+.++.++.|+|+
T Consensus 195 ------------------T~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 224 (293)
T PRK14185 195 ------------------SKNLKKECLE--ADIIIAALGQPEFVKADMVK 224 (293)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1348888887 99999999999999999988
No 206
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=79.84 E-value=1.4 Score=43.17 Aligned_cols=110 Identities=20% Similarity=0.344 Sum_probs=65.8
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccc-cCCcCCccCCCCHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKD-PGDFMGLREGASLLE 402 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~-~~~~~~~~~~~~L~e 402 (533)
||+|+||||+-. ..++...+...+.++. ..|+|+|.+- +| +.+...-+.+++. ..++. .....++.|
T Consensus 1 KI~iIGaGS~~~--~~~l~~~l~~~~~l~~----~ei~L~Did~----~RL~~~~~~~~~~~~~~~~~~~-v~~ttd~~e 69 (183)
T PF02056_consen 1 KITIIGAGSTYF--PLLLLGDLLRTEELSG----SEIVLMDIDE----ERLEIVERLARRMVEEAGADLK-VEATTDRRE 69 (183)
T ss_dssp EEEEETTTSCCH--HHHHHHHHHCTTTSTE----EEEEEE-SCH----HHHHHHHHHHHHHHHHCTTSSE-EEEESSHHH
T ss_pred CEEEECCchHhh--HHHHHHHHhcCccCCC----cEEEEEcCCH----HHHHHHHHHHHHHHHhcCCCeE-EEEeCCHHH
Confidence 799999999854 3455555543445543 6899999852 22 1111222233332 11111 113478999
Q ss_pred HhcccCCcEEE---------------------Eecc-------CCCCC--------CHHHHHHhhhcCCCCCeEEecCCC
Q 009519 403 VVRKVKPHVLL---------------------GLSG-------VGGVF--------NEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 403 ~V~~vkptvLI---------------------G~S~-------~~g~F--------teevv~~Ma~~~~erPIIFaLSNP 446 (533)
|+++ +|.+| |+-+ .+|.| =.|+.+.|. +.|++--||=.+||
T Consensus 70 Al~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~-~~~PdAw~iNytNP 146 (183)
T PF02056_consen 70 ALEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIE-ELCPDAWLINYTNP 146 (183)
T ss_dssp HHTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHH-HHTTTSEEEE-SSS
T ss_pred HhCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHH-HhCCCcEEEeccCh
Confidence 9998 89888 3222 12332 257888894 58999999999999
Q ss_pred CC
Q 009519 447 TM 448 (533)
Q Consensus 447 t~ 448 (533)
..
T Consensus 147 ~~ 148 (183)
T PF02056_consen 147 MG 148 (183)
T ss_dssp HH
T ss_pred HH
Confidence 97
No 207
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=79.81 E-value=3.4 Score=40.36 Aligned_cols=102 Identities=25% Similarity=0.300 Sum_probs=58.8
Q ss_pred eEEEeC-chhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccc--cCCcCCccCCCCHH
Q 009519 325 KIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD--PGDFMGLREGASLL 401 (533)
Q Consensus 325 riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~--~~~~~~~~~~~~L~ 401 (533)
||.|+| +|..|..+|..+.+. | .+++++|++ .+ .+......+... ...........+..
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~--~~~~l~~~~~~~~~~~g~~~~~~~~~~~ 63 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LE--KAEEAAAKALEELGHGGSDIKVTGADNA 63 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HH--HHHHHHHHHHhhccccCCCceEEEeChH
Confidence 799997 899999999998753 3 367777663 11 111111111000 00000000113567
Q ss_pred HHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCc
Q 009519 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMN 449 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~ 449 (533)
|+++. +|++| ++. +-...+++++.++.... ..+|+.++||.+.
T Consensus 64 ea~~~--aDvVi-lav-p~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 64 EAAKR--ADVVI-LAV-PWDHVLKTLESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred HHHhc--CCEEE-EEC-CHHHHHHHHHHHHHhcc-CCEEEEeccCcee
Confidence 88877 78766 443 34445777887754233 4799999999863
No 208
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=79.80 E-value=52 Score=36.97 Aligned_cols=222 Identities=18% Similarity=0.155 Sum_probs=126.2
Q ss_pred hCCCc-eeeeecCCCchHHHHHHHHhccCceeccCc---chhHHHHHHHHHHHHHHh---------C---C-CC--CCCC
Q 009519 262 RWPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDDI---QGTAGVALAGLLGTVRAQ---------G---L-SL--TDFA 322 (533)
Q Consensus 262 ~~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDDi---QGTaaV~LAgli~Alr~~---------g---~-~l--~dl~ 322 (533)
..|+. .|+.--.+..| ..+..--+.-+++.|-.- +.+|=-+++-+++..|-. | + .+ .+|.
T Consensus 61 ~~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~ 139 (526)
T PRK13581 61 AAKNLKVIGRAGVGVDN-VDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELY 139 (526)
T ss_pred hCCCCeEEEECCccccc-ccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccC
Confidence 45776 77776666655 222222234588888532 235566788888887742 1 0 11 2355
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
++++.|+|.|..|..+|+.+... |+ +++.+|+.. .+ .+ ..... . ...+|.|
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~----~~-----~~--~~~~g--~----~~~~l~e 190 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF-----GM-------KVIAYDPYI----SP-----ER--AAQLG--V----ELVSLDE 190 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCC----Ch-----hH--HHhcC--C----EEEcHHH
Confidence 59999999999999999998764 43 688888631 11 11 00000 0 1236999
Q ss_pred HhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcceec
Q 009519 403 VVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENVDL 478 (533)
Q Consensus 403 ~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv~~ 478 (533)
+++. .|+++=.-. .-+.|+++.+..|. +..++.-.|.-..--|..-.+|++ +|+.--|.=-=|++-..
T Consensus 191 ll~~--aDiV~l~lP~t~~t~~li~~~~l~~mk----~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~EP~ 262 (526)
T PRK13581 191 LLAR--ADFITLHTPLTPETRGLIGAEELAKMK----PGVRIINCARGGIIDEAALAEALK--SGKVAGAALDVFEKEPP 262 (526)
T ss_pred HHhh--CCEEEEccCCChHhhcCcCHHHHhcCC----CCeEEEECCCCceeCHHHHHHHHh--cCCeeEEEEecCCCCCC
Confidence 9987 898763321 23789999999994 577888787755533433444444 56654332111111111
Q ss_pred CCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCC
Q 009519 479 GNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNE 529 (533)
Q Consensus 479 ~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~ 529 (533)
+ .. .--+..|+.+-|=+|-....+ ...|...+++.+.+....+
T Consensus 263 ~-~~--pL~~~~nvilTPHia~~t~e~-----~~~~~~~~~~ni~~~~~g~ 305 (526)
T PRK13581 263 T-DS--PLFELPNVVVTPHLGASTAEA-----QENVAIQVAEQVIDALRGG 305 (526)
T ss_pred C-Cc--hhhcCCCeeEcCccccchHHH-----HHHHHHHHHHHHHHHHcCC
Confidence 1 01 112346899999887544332 2344555555555544433
No 209
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=79.67 E-value=9.1 Score=42.85 Aligned_cols=198 Identities=19% Similarity=0.165 Sum_probs=110.0
Q ss_pred CCCc-eeeeecCCCchHHHHHHHHhccCceeccC---cchhHHHHHHHHHHHHHHh------------------CCCCCC
Q 009519 263 WPKA-IVQFEDFQMKWAFETLERYRKRFCMFNDD---IQGTAGVALAGLLGTVRAQ------------------GLSLTD 320 (533)
Q Consensus 263 ~P~~-~I~~EDf~~~~af~iL~ryr~~~~~FnDD---iQGTaaV~LAgli~Alr~~------------------g~~l~d 320 (533)
.|+. .|+.--.+..| ..+-.--+.-++|.|-- -+.+|=-+++.+++..|-. |..
T Consensus 60 ~~~Lk~I~~~~~G~d~-id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~--- 135 (525)
T TIGR01327 60 APKLKVIGRAGVGVDN-IDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTE--- 135 (525)
T ss_pred CCCceEEEECCcccch-hcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccc---
Confidence 3554 55555555444 22222122346666632 2245555677777766531 233
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCH
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASL 400 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L 400 (533)
|..+++.|+|-|..|..+|+.+... |+ +++.+|+.. ++.+ .....- ....+|
T Consensus 136 l~gktvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~---------~~~~--~~~~g~-----~~~~~l 187 (525)
T TIGR01327 136 LYGKTLGVIGLGRIGSIVAKRAKAF-----GM-------KVLAYDPYI---------SPER--AEQLGV-----ELVDDL 187 (525)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCC---------ChhH--HHhcCC-----EEcCCH
Confidence 4449999999999999999998754 43 688888631 1100 000000 012469
Q ss_pred HHHhcccCCcEEEEe-c---cCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCcce
Q 009519 401 LEVVRKVKPHVLLGL-S---GVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFENV 476 (533)
Q Consensus 401 ~e~V~~vkptvLIG~-S---~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~pv 476 (533)
.|+++. .|+++=. . ..-+.|+++.+..|. +..++.=.|.-.---|..-.+|++ .|+.-.|.=-=|++-
T Consensus 188 ~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~mk----~ga~lIN~aRG~~vde~aL~~aL~--~g~i~gAaLDVf~~E 259 (525)
T TIGR01327 188 DELLAR--ADFITVHTPLTPETRGLIGAEELAKMK----KGVIIVNCARGGIIDEAALYEALE--EGHVRAAALDVFEKE 259 (525)
T ss_pred HHHHhh--CCEEEEccCCChhhccCcCHHHHhcCC----CCeEEEEcCCCceeCHHHHHHHHH--cCCeeEEEEecCCCC
Confidence 999987 8887622 1 124789999999993 567888777755433444444544 666544421111111
Q ss_pred ecCCCeeeecccccceeechhhhHHHH
Q 009519 477 DLGNGKIGHVNQANNMYLFPGIGLGTL 503 (533)
Q Consensus 477 ~~~~G~~~~p~Q~NN~~iFPGiglG~l 503 (533)
... . ..--+..|+.+-|=+|-...
T Consensus 260 P~~-~--~pL~~~~nvi~TPHia~~t~ 283 (525)
T TIGR01327 260 PPT-D--NPLFDLDNVIATPHLGASTR 283 (525)
T ss_pred CCC-C--ChhhcCCCeEECCCccccHH
Confidence 000 0 11234568888888875443
No 210
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=79.23 E-value=2.5 Score=34.58 Aligned_cols=35 Identities=20% Similarity=0.510 Sum_probs=29.2
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLIT 371 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~ 371 (533)
|++|+|+|..|+-+|..+... | +++.++++..-+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~-----g-------~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL-----G-------KEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-----T-------SEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHh-----C-------cEEEEEeccchhh
Confidence 799999999999999998653 3 4899998877665
No 211
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=79.21 E-value=1.8 Score=41.47 Aligned_cols=104 Identities=20% Similarity=0.287 Sum_probs=52.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcccc-CCCCCChhhhccccccCC--------cCCcc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAAAPFAKDPGD--------FMGLR 395 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~-~r~~l~~~k~~~A~~~~~--------~~~~~ 395 (533)
||.|+|||..|.|||-+++.+ |. ++.++|.+---.. .+..+......+.+...- .....
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-----G~-------~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~ 68 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-----GY-------EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS 68 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-----TS-------EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE
T ss_pred CEEEEcCCHHHHHHHHHHHhC-----CC-------cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc
Confidence 689999999999999999875 43 7889988422110 001111101111111000 00001
Q ss_pred CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
-..+|++++ + .|.+|=.-.----.++++.+.+.+ .++.=.|| .||
T Consensus 69 ~~~dl~~~~-~--adlViEai~E~l~~K~~~~~~l~~-~~~~~~il-asn 113 (180)
T PF02737_consen 69 FTTDLEEAV-D--ADLVIEAIPEDLELKQELFAELDE-ICPPDTIL-ASN 113 (180)
T ss_dssp EESSGGGGC-T--ESEEEE-S-SSHHHHHHHHHHHHC-CS-TTSEE-EE-
T ss_pred cccCHHHHh-h--hheehhhccccHHHHHHHHHHHHH-HhCCCceE-Eec
Confidence 235677766 4 688876543223467788888854 55444444 344
No 212
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=78.79 E-value=4 Score=43.42 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=18.4
Q ss_pred eEEEeCchhHHHHHHHHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~ 344 (533)
||.|+|||+-|+++|..+.+
T Consensus 1 kI~VIGaG~wGtALA~~la~ 20 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAE 20 (342)
T ss_pred CEEEECcCHHHHHHHHHHHH
Confidence 68999999999999999975
No 213
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=78.76 E-value=9.4 Score=41.68 Aligned_cols=82 Identities=9% Similarity=0.020 Sum_probs=45.6
Q ss_pred HHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcccccc
Q 009519 309 GTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDP 388 (533)
Q Consensus 309 ~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~ 388 (533)
.++.-....+.. .|++|+|-+.-..++++.+.+ .|+.. .. +++.+... ..+.. ...
T Consensus 300 ~~l~~~~~~l~G---krvai~~~~~~~~~l~~~l~e-----lGm~v------~~------~~~~~~~~---~~~~~-~~~ 355 (432)
T TIGR01285 300 DAMLDTHFFLGG---KKVAIAAEPDLLAAWATFFTS-----MGAQI------VA------AVTTTGSP---LLQKL-PVE 355 (432)
T ss_pred HHHHHHHHhhCC---CEEEEEcCHHHHHHHHHHHHH-----CCCEE------EE------EEeCCCCH---HHHhC-CcC
Confidence 333344444555 899999988888999999765 46632 11 11221110 00000 000
Q ss_pred CCcCCccCCCCHHHHhcccCCcEEEEec
Q 009519 389 GDFMGLREGASLLEVVRKVKPHVLLGLS 416 (533)
Q Consensus 389 ~~~~~~~~~~~L~e~V~~vkptvLIG~S 416 (533)
.-.. .+...|++.++..+||++||-|
T Consensus 356 ~~~~--~D~~~l~~~i~~~~~dliig~s 381 (432)
T TIGR01285 356 TVVI--GDLEDLEDLACAAGADLLITNS 381 (432)
T ss_pred cEEe--CCHHHHHHHHhhcCCCEEEECc
Confidence 0000 1224578889889999999866
No 214
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=78.53 E-value=5.8 Score=42.58 Aligned_cols=83 Identities=14% Similarity=0.246 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCceEEEeCch-hHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCC
Q 009519 300 AGVALAGLLGTVRAQGLSLTDFADQKIVVVGAG-SAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLD 378 (533)
Q Consensus 300 aaV~LAgli~Alr~~g~~l~dl~~~riv~~GAG-sAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~ 378 (533)
.-+|-.|++.=++-.+.+++. +++||+|-+ ..|.-+|.||... |. .+.+|.++
T Consensus 194 ~PCTp~avi~LL~~~~i~l~G---K~vvVIGRS~iVGkPla~LL~~~-----~A-------TVTicHs~----------- 247 (345)
T PLN02897 194 VSCTPKGCVELLIRSGVEIAG---KNAVVIGRSNIVGLPMSLLLQRH-----DA-------TVSTVHAF----------- 247 (345)
T ss_pred cCCCHHHHHHHHHHhCCCCCC---CEEEEECCCccccHHHHHHHHHC-----CC-------EEEEEcCC-----------
Confidence 456777888888889998888 999999975 5688888877642 32 45555442
Q ss_pred hhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHH
Q 009519 379 PAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLK 428 (533)
Q Consensus 379 ~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~ 428 (533)
..+|.+.+++ +|++|-..++++.|+.++|+
T Consensus 248 ------------------T~nl~~~~~~--ADIvIsAvGkp~~v~~d~vk 277 (345)
T PLN02897 248 ------------------TKDPEQITRK--ADIVIAAAGIPNLVRGSWLK 277 (345)
T ss_pred ------------------CCCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 1247788888 99999999999999999998
No 215
>PLN02306 hydroxypyruvate reductase
Probab=78.47 E-value=13 Score=40.32 Aligned_cols=177 Identities=19% Similarity=0.217 Sum_probs=93.5
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcccc---c-cCCcCCcc
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAK---D-PGDFMGLR 395 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~---~-~~~~~~~~ 395 (533)
+|.++++.|+|.|..|..+|+++..+| |+ +|+.+|+..- +.+......+.. . ........
T Consensus 162 ~L~gktvGIiG~G~IG~~vA~~l~~~f----Gm-------~V~~~d~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~ 225 (386)
T PLN02306 162 LLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------NLIYYDLYQS-----TRLEKFVTAYGQFLKANGEQPVTWK 225 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcC----CC-------EEEEECCCCc-----hhhhhhhhhhccccccccccccccc
Confidence 455699999999999999999986432 33 6888887421 111110011100 0 00000001
Q ss_pred CCCCHHHHhcccCCcEEEEe----ccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecC-
Q 009519 396 EGASLLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASG- 470 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~----S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtG- 470 (533)
...+|.|+++. .|+++-. ....|.|+++.++.|. +..++.=.|.=.---|..--+|++ .|+ |.+.|
T Consensus 226 ~~~~L~ell~~--sDiV~lh~Plt~~T~~lin~~~l~~MK----~ga~lIN~aRG~lVDe~AL~~AL~--sg~-i~gAaL 296 (386)
T PLN02306 226 RASSMEEVLRE--ADVISLHPVLDKTTYHLINKERLALMK----KEAVLVNASRGPVIDEVALVEHLK--ANP-MFRVGL 296 (386)
T ss_pred ccCCHHHHHhh--CCEEEEeCCCChhhhhhcCHHHHHhCC----CCeEEEECCCccccCHHHHHHHHH--hCC-eeEEEE
Confidence 12479999988 8998863 1224899999999993 566777666422211222333433 555 33332
Q ss_pred CCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccCCC
Q 009519 471 SPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNCNE 529 (533)
Q Consensus 471 SPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~~~ 529 (533)
-=|++-...+ ..--+..|+.+-|=++-....+ ...|...+++-+.+....+
T Consensus 297 DVf~~EP~~~---~~L~~~pNVilTPHiag~T~e~-----~~~~~~~~~~ni~~~~~g~ 347 (386)
T PLN02306 297 DVFEDEPYMK---PGLADMKNAVVVPHIASASKWT-----REGMATLAALNVLGKLKGY 347 (386)
T ss_pred eCCCCCCCCc---chHhhCCCEEECCccccCcHHH-----HHHHHHHHHHHHHHHHcCC
Confidence 0111100111 1122567999999887432221 1344444555554444443
No 216
>PLN02688 pyrroline-5-carboxylate reductase
Probab=78.45 E-value=6.7 Score=39.00 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.7
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (533)
||.|+|.|..|.+||+-|++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~ 22 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVAS 22 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHC
Confidence 689999999999999998753
No 217
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=78.40 E-value=2.6 Score=44.50 Aligned_cols=36 Identities=22% Similarity=0.401 Sum_probs=27.8
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++.||||+|+|.||+..|+.|.+. |.+ .+|.++|..
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~-----~~~-----~~I~li~~e 37 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQ-----GFT-----GELHLFSDE 37 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhh-----CCC-----CCEEEeCCC
Confidence 447999999999999999998764 322 367777764
No 218
>PRK07411 hypothetical protein; Validated
Probab=78.28 E-value=1.7 Score=46.72 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=33.2
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++|++ .||+|+|+|.-|.-+|+.|+.+++ ++|.++|.+
T Consensus 34 ~~L~~---~~VlivG~GGlG~~va~~La~~Gv-----------g~l~lvD~D 71 (390)
T PRK07411 34 KRLKA---ASVLCIGTGGLGSPLLLYLAAAGI-----------GRIGIVDFD 71 (390)
T ss_pred HHHhc---CcEEEECCCHHHHHHHHHHHHcCC-----------CEEEEECCC
Confidence 45566 999999999999999999998766 689999986
No 219
>PRK06141 ornithine cyclodeaminase; Validated
Probab=78.18 E-value=13 Score=38.69 Aligned_cols=106 Identities=15% Similarity=0.101 Sum_probs=63.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.+++|+|+|..|..++..++.. .+. ++|+++|+. .. ........+.+..... ....++.++
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~----~~~------~~V~V~~Rs----~~--~a~~~a~~~~~~g~~~---~~~~~~~~a 186 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASV----RPI------KQVRVWGRD----PA--KAEALAAELRAQGFDA---EVVTDLEAA 186 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH--HHHHHHHHHHhcCCce---EEeCCHHHH
Confidence 7999999999999998877653 232 578888762 11 1222222222111010 123678999
Q ss_pred hcccCCcEEEEeccCC-CCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHH
Q 009519 404 VRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAAD 456 (533)
Q Consensus 404 V~~vkptvLIG~S~~~-g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~ 456 (533)
+++ .|++|-+++.+ -+|+.++++. ..-|+..=|.+..+-|+.++-
T Consensus 187 v~~--aDIVi~aT~s~~pvl~~~~l~~------g~~i~~ig~~~~~~~El~~~~ 232 (314)
T PRK06141 187 VRQ--ADIISCATLSTEPLVRGEWLKP------GTHLDLVGNFTPDMRECDDEA 232 (314)
T ss_pred Hhc--CCEEEEeeCCCCCEecHHHcCC------CCEEEeeCCCCcccccCCHHH
Confidence 987 99998776543 3466665542 123333335555667998764
No 220
>PRK06270 homoserine dehydrogenase; Provisional
Probab=78.17 E-value=19 Score=38.04 Aligned_cols=110 Identities=22% Similarity=0.237 Sum_probs=65.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHH---HHHHcCCChhhhcCeEEEEeccCccccCCCCCChhh-hccccccCCc---CCccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA---AARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAA-APFAKDPGDF---MGLRE 396 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~---~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k-~~~A~~~~~~---~~~~~ 396 (533)
.||.++|.|..|.+++++|.+. +.++.|+.. +=+-++|++|.+.+.+. ++..+ ..+++..... .+...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~----~vvai~d~~~~~~~~~G-i~~~~~~~~~~~~~~~~~~~~~~~ 77 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDL----KVVAIADSSGSAIDPDG-LDLELALKVKEETGKLADYPEGGG 77 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCE----EEEEEEeCCCcccCcCC-CCHHHHHHHHhccCCcccCccccc
Confidence 6899999999999999998753 222234321 23557899998887653 33221 2233221110 00001
Q ss_pred CCCHHHHhcccCCcEEEEeccC---CCCCCHHH-HHHhhhcCCCCCeEE
Q 009519 397 GASLLEVVRKVKPHVLLGLSGV---GGVFNEEV-LKAMRESDSVKPAIF 441 (533)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~---~g~Fteev-v~~Ma~~~~erPIIF 441 (533)
..++.|+++...+|++|=++.. ++-...++ .+++. +..+||.
T Consensus 78 ~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~---~GkhVVt 123 (341)
T PRK06270 78 EISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALE---RGKHVVT 123 (341)
T ss_pred cCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHH---CCCEEEc
Confidence 2479999988889999976642 12233555 44452 4678886
No 221
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=78.13 E-value=7.1 Score=38.44 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=17.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAA 347 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~ 347 (533)
+||.|+|.|..+. +|..+..-+.
T Consensus 42 ~rI~~~G~GgSa~-~A~~~a~~l~ 64 (196)
T PRK10886 42 NKILCCGNGTSAA-NAQHFAASMI 64 (196)
T ss_pred CEEEEEECcHHHH-HHHHHHHHHh
Confidence 8999999998765 6666665553
No 222
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=78.02 E-value=11 Score=39.88 Aligned_cols=137 Identities=17% Similarity=0.140 Sum_probs=82.2
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc--ccC-CCCCChhhhccccccCCcCCccCCCCH
Q 009519 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKE-RKNLDPAAAPFAKDPGDFMGLREGASL 400 (533)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi--~~~-r~~l~~~k~~~A~~~~~~~~~~~~~~L 400 (533)
||.|+|| |..|..+|..|+.. |+-..+..-.+.|+|.+.-. ..+ .-+|.+...++... . ....+.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~-----~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~---~---~~~~~~ 69 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG-----RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDG---V---VPTHDP 69 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc-----cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCc---e---eccCCh
Confidence 6899999 99999999887653 33100000169999974321 111 12344333222111 0 012246
Q ss_pred HHHhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcC-CCCCeEEecCCCCCcccCCHHHHhcccCC--
Q 009519 401 LEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESD-SVKPAIFAMSNPTMNAECTAADAFKHAGE-- 463 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~-~erPIIFaLSNPt~~aE~tpe~A~~wt~G-- 463 (533)
.+.+++ .|++|=+.+.+ |- +=+++++.|++ + ++.-||+-.|||.. +...-+++++.+
T Consensus 70 ~~~~~~--aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~-~~~~~~iiivvsNPvD---v~t~v~~~~sg~~~ 143 (324)
T TIGR01758 70 AVAFTD--VDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDK-LAKKDCKVLVVGNPAN---TNALVLSNYAPSIP 143 (324)
T ss_pred HHHhCC--CCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHh-hCCCCeEEEEeCCcHH---HHHHHHHHHcCCCC
Confidence 778888 89988555443 21 12466777754 7 48899999999994 777777777632
Q ss_pred cEEEecCCCCcceec
Q 009519 464 NIVFASGSPFENVDL 478 (533)
Q Consensus 464 rai~AtGSPf~pv~~ 478 (533)
+.+|.||+-.+...+
T Consensus 144 ~~vig~gt~LDs~R~ 158 (324)
T TIGR01758 144 PKNFSALTRLDHNRA 158 (324)
T ss_pred cceEEEeeehHHHHH
Confidence 238888876665543
No 223
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=77.98 E-value=4.9 Score=41.38 Aligned_cols=104 Identities=14% Similarity=0.098 Sum_probs=56.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|+|+.|..+|-.|.++ | .++.++++... ..-+ ..+.-. .. .....+.......+. +
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~-----g-------~~V~~~~r~~~-~~~~~~g~~~~-~~--~~~~~~~~~~~~~~~-~ 68 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA-----G-------FDVHFLLRSDY-EAVRENGLQVD-SV--HGDFHLPPVQAYRSA-E 68 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEEeCCH-HHHHhCCeEEE-eC--CCCeeecCceEEcch-h
Confidence 6999999999999999888764 3 25666665431 1101 111000 00 000000000001122 2
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
.+.. +|++| ++. +..-++++++.++....++.+|..|-|=-.
T Consensus 69 ~~~~--~D~vi-lav-K~~~~~~~~~~l~~~~~~~~~iv~lqNG~~ 110 (313)
T PRK06249 69 DMPP--CDWVL-VGL-KTTANALLAPLIPQVAAPDAKVLLLQNGLG 110 (313)
T ss_pred hcCC--CCEEE-EEe-cCCChHhHHHHHhhhcCCCCEEEEecCCCC
Confidence 3333 68776 554 344568888888654566778888998765
No 224
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=77.97 E-value=1.8 Score=43.01 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=26.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi 370 (533)
-+|+|+|||.||+..|..|.+. |+ ++.++|++.-.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~-----G~-------~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARA-----GI-------DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHT-----TC-------EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhc-----cc-------ccccchhcccc
Confidence 5799999999999999988764 54 58888886543
No 225
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=77.85 E-value=1.8 Score=46.58 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=32.6
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++|++ .||+|+|+|..|.-+|..|+.+++ ++|.++|.+
T Consensus 38 ~~L~~---~~VlviG~GGlGs~va~~La~~Gv-----------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKN---ARVLVIGAGGLGSPTLLYLAAAGV-----------GTLGIVEFD 75 (392)
T ss_pred HHHhc---CCEEEECCCHHHHHHHHHHHHcCC-----------CeEEEECCC
Confidence 45566 999999999999999999987755 689999976
No 226
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=76.80 E-value=2.2 Score=45.00 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=28.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||+++|+|.-|.-+|+.|+.+++ ++|.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGV-----------g~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGV-----------RHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----------CeEEEECCC
Confidence 68999999999999999988766 699999986
No 227
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=76.77 E-value=7.1 Score=40.35 Aligned_cols=126 Identities=21% Similarity=0.289 Sum_probs=74.1
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc-CccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD-GLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~-GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
|.|+|||..|..+|-.|+. .|+. ..+.++|.+ .++..-..+|.+....+. .. .. ....+ .+.+
T Consensus 1 i~iiGaG~VG~~~a~~l~~-----~~~~-----~el~l~D~~~~~~~g~~~DL~~~~~~~~-~~-~i---~~~~~-~~~l 64 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIA-----KGLA-----SELVLVDVNEEKAKGDALDLSHASAFLA-TG-TI---VRGGD-YADA 64 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCccHHHHHHHhHHHhccccC-CC-eE---EECCC-HHHh
Confidence 5799999999999976654 3553 479999973 221111124444433321 11 00 01234 4577
Q ss_pred cccCCcEEEEeccC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--CCcEEEe
Q 009519 405 RKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA--GENIVFA 468 (533)
Q Consensus 405 ~~vkptvLIG~S~~---~g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt--~Grai~A 468 (533)
++ .|++|=+.+. +|- +=+++++.+. ++++.-+|+-.|||.. +..+-+.+++ +-+-+|+
T Consensus 65 ~~--aDiVIitag~p~~~~~~R~~l~~~n~~i~~~~~~~i~-~~~p~~~viv~sNP~d---~~~~~~~~~sg~~~~kviG 138 (300)
T cd00300 65 AD--ADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLK-KYGPDAIILVVSNPVD---ILTYVAQKLSGLPKNRVIG 138 (300)
T ss_pred CC--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HhCCCeEEEEccChHH---HHHHHHHHHhCcCHHHEEe
Confidence 77 8887733332 331 1245666664 3889999999999985 6666666653 2345788
Q ss_pred cCCCC
Q 009519 469 SGSPF 473 (533)
Q Consensus 469 tGSPf 473 (533)
+|.--
T Consensus 139 ~gt~l 143 (300)
T cd00300 139 SGTLL 143 (300)
T ss_pred cCCcH
Confidence 86443
No 228
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=76.75 E-value=2.1 Score=42.05 Aligned_cols=31 Identities=29% Similarity=0.521 Sum_probs=25.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|+|+|||.||+..|..|.+ .|+ ++.++|+.
T Consensus 2 dvvIIG~G~aGl~aA~~l~~-----~g~-------~v~lie~~ 32 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAAR-----ANL-------KTLIIEGM 32 (300)
T ss_pred cEEEECCCHHHHHHHHHHHH-----CCC-------CEEEEecc
Confidence 68999999999999998755 343 58889974
No 229
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=76.66 E-value=13 Score=38.89 Aligned_cols=106 Identities=12% Similarity=0.057 Sum_probs=64.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.++.|+|+|.-|-.-++.+... .. -++|+++|+. .++ ...+...+.+...+. ....+.+|+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~----~~------~~~v~V~~r~----~~~--~~~~~~~~~~~g~~v---~~~~~~~ea 189 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRV----FD------LEEVSVYCRT----PST--REKFALRASDYEVPV---RAATDPREA 189 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CC------CCEEEEECCC----HHH--HHHHHHHHHhhCCcE---EEeCCHHHH
Confidence 7899999999877666555332 11 2688888772 221 222222222111110 124679999
Q ss_pred hcccCCcEEEEecc-CCCCCCHHHHHHhhhcCCCCCeEEecCCCCC-cccCCHHHH
Q 009519 404 VRKVKPHVLLGLSG-VGGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADA 457 (533)
Q Consensus 404 V~~vkptvLIG~S~-~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~-~aE~tpe~A 457 (533)
+++ .|++|-+.. ....|..+++| +..-|-++.-.+| +.|+.++-.
T Consensus 190 v~~--aDiVitaT~s~~P~~~~~~l~-------~g~~v~~vGs~~p~~~Eld~~~l 236 (325)
T TIGR02371 190 VEG--CDILVTTTPSRKPVVKADWVS-------EGTHINAIGADAPGKQELDPEIL 236 (325)
T ss_pred hcc--CCEEEEecCCCCcEecHHHcC-------CCCEEEecCCCCcccccCCHHHH
Confidence 987 899986553 34668887775 4556888876555 679998743
No 230
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=76.49 E-value=5 Score=44.51 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=64.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
-+|-|+|.|..|.++|..|.+. |. ++++.|++ .++ ..+....-...... .....++.|+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-----G~-------~V~v~dr~----~~~--~~~l~~~~~~~g~~---i~~~~s~~e~ 60 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-----GF-------KISVYNRT----YEK--TEEFVKKAKEGNTR---VKGYHTLEEL 60 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-----CC-------eEEEEeCC----HHH--HHHHHHhhhhcCCc---ceecCCHHHH
Confidence 3799999999999999999764 43 57888762 211 11111100000000 0124679999
Q ss_pred hccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 404 VRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 404 V~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
++.. +|+++| +.-.++...+++++.+.....+..||.=+||=.
T Consensus 61 v~~l~~~d~Ii-l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 61 VNSLKKPRKVI-LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred HhcCCCCCEEE-EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 9764 588555 333467788888888765566788999999854
No 231
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=76.33 E-value=11 Score=39.17 Aligned_cols=128 Identities=20% Similarity=0.331 Sum_probs=74.5
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+|+|..|..+|..+... |+. ..++++|.+-=...+. .++.+. .++-.+. .. ...+. +.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-----g~~-----~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~~-~i----~~~d~-~~ 64 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-----GLA-----SEIVLVDINKAKAEGEAMDLAHG-TPFVKPV-RI----YAGDY-AD 64 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-----CCC-----CEEEEEECCchhhhhHHHHHHcc-ccccCCe-EE----eeCCH-HH
Confidence 799999999999999887653 442 5799999741101100 012211 1121111 00 12344 55
Q ss_pred hcccCCcEEEEeccCC---C-CC----------CHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--CcEEE
Q 009519 404 VRKVKPHVLLGLSGVG---G-VF----------NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--ENIVF 467 (533)
Q Consensus 404 V~~vkptvLIG~S~~~---g-~F----------teevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--Grai~ 467 (533)
+++ .|+.|=+.+.+ | .. =+++++.+.+ ++..-+|+-.+||. +....-+++.+. -+-+|
T Consensus 65 l~~--aDiViita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~-~~~~giiiv~tNP~---d~~~~~~~~~sg~p~~~vi 138 (308)
T cd05292 65 CKG--ADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILK-YAPDAILLVVTNPV---DVLTYVAYKLSGLPPNRVI 138 (308)
T ss_pred hCC--CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-HCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHee
Confidence 777 78866333332 2 11 1356666643 78889999999997 567777777651 24488
Q ss_pred ecCCCCcc
Q 009519 468 ASGSPFEN 475 (533)
Q Consensus 468 AtGSPf~p 475 (533)
++|.-.+.
T Consensus 139 G~gt~LDs 146 (308)
T cd05292 139 GSGTVLDT 146 (308)
T ss_pred cccchhhH
Confidence 88866543
No 232
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=76.33 E-value=5.6 Score=41.65 Aligned_cols=132 Identities=15% Similarity=0.227 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhC--CCc---eeeeecCCCchHHHHHHHHhcc--Cceecc--------CcchhHHHHHHHHHHHHHHhCC
Q 009519 252 VDEFMEAVHARW--PKA---IVQFEDFQMKWAFETLERYRKR--FCMFND--------DIQGTAGVALAGLLGTVRAQGL 316 (533)
Q Consensus 252 vdefv~av~~~~--P~~---~I~~EDf~~~~af~iL~ryr~~--~~~FnD--------DiQGTaaV~LAgli~Alr~~g~ 316 (533)
-+|+.+.+.++- |++ ++||==.+.-+.-.+|++---. +==||- ...+--.+|-+|++--++-.+.
T Consensus 73 ~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p~KDVDG~hp~N~g~L~~~~~~~~PCTp~gi~~ll~~~~i 152 (283)
T COG0190 73 EEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDPEKDVDGFHPYNLGKLAQGEPGFLPCTPAGIMTLLEEYGI 152 (283)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCcCCCccccChhHhcchhcCCCCCCCCCHHHHHHHHHHhCC
Confidence 456666666664 543 6666544444455555543211 100110 1333446788999999999999
Q ss_pred CCCCCCCceEEEeCchh-HHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCcc
Q 009519 317 SLTDFADQKIVVVGAGS-AGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGs-Ag~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
+|.. .++||+|.+. -|--+|.+|... +. -+-+|+|+
T Consensus 153 ~l~G---k~~vVVGrS~iVGkPla~lL~~~-----na-------TVtvcHs~---------------------------- 189 (283)
T COG0190 153 DLRG---KNVVVVGRSNIVGKPLALLLLNA-----NA-------TVTVCHSR---------------------------- 189 (283)
T ss_pred CCCC---CEEEEECCCCcCcHHHHHHHHhC-----CC-------EEEEEcCC----------------------------
Confidence 9999 9999999874 677888887763 22 35555442
Q ss_pred CCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHH
Q 009519 396 EGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKA 429 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~ 429 (533)
..+|.+.+++ +|++|-.-+.++.|+.|||+.
T Consensus 190 -T~~l~~~~k~--ADIvv~AvG~p~~i~~d~vk~ 220 (283)
T COG0190 190 -TKDLASITKN--ADIVVVAVGKPHFIKADMVKP 220 (283)
T ss_pred -CCCHHHHhhh--CCEEEEecCCccccccccccC
Confidence 1347788888 999999999999999988873
No 233
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.86 E-value=11 Score=37.98 Aligned_cols=31 Identities=39% Similarity=0.638 Sum_probs=25.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
+||.|+|+|..|.+||..+... |. +++++|.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~ 34 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDI 34 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeC
Confidence 5899999999999999988653 43 6888884
No 234
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=75.70 E-value=15 Score=40.01 Aligned_cols=32 Identities=34% Similarity=0.597 Sum_probs=26.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||+|+|.|-.|+++|++|.+. |. .+..+|.+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~-----G~-------~V~~~D~~ 46 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL-----GA-------KVTAFDKK 46 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC-----CC-------EEEEECCC
Confidence 7999999999999999998764 43 57788864
No 235
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=75.53 E-value=3.2 Score=43.78 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=27.5
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi 370 (533)
|+|+|||.||..+|..|.++ +.| .+|.++|++--.
T Consensus 2 viIvGaGpAGlslA~~l~~~---~~g-------~~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADA---RPG-------LSVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhc---CCC-------CEEEEEcCCccc
Confidence 79999999999999999544 234 478999886544
No 236
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=75.24 E-value=2.7 Score=42.41 Aligned_cols=32 Identities=31% Similarity=0.520 Sum_probs=28.2
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||+++|+|..|.-+++.|+.+++ ++|.++|.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gv-----------g~i~ivD~D 32 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGF-----------GQIHVIDMD 32 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCC
Confidence 68999999999999999987644 689999987
No 237
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=75.15 E-value=8.9 Score=40.85 Aligned_cols=30 Identities=20% Similarity=0.281 Sum_probs=24.4
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHH
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.++..|++.+|.|+|.|+.|.++|..|.+.
T Consensus 10 ~~~~~L~gktIgIIG~GsmG~AlA~~L~~s 39 (330)
T PRK05479 10 ADLSLIKGKKVAIIGYGSQGHAHALNLRDS 39 (330)
T ss_pred CChhhhCCCEEEEEeeHHHHHHHHHHHHHC
Confidence 344556669999999999999999998654
No 238
>PRK06932 glycerate dehydrogenase; Provisional
Probab=75.03 E-value=28 Score=36.49 Aligned_cols=142 Identities=18% Similarity=0.201 Sum_probs=83.6
Q ss_pred CCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCC
Q 009519 319 TDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGA 398 (533)
Q Consensus 319 ~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~ 398 (533)
.+|.++++.|+|-|..|..+|+++... |+ +|+.+|+..- .. . . ....
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~f-----g~-------~V~~~~~~~~--------~~----~-~--------~~~~ 189 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQAL-----GM-------KVLYAEHKGA--------SV----C-R--------EGYT 189 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCcc--------cc----c-c--------cccC
Confidence 356669999999999999999988654 33 5666665210 00 0 0 0124
Q ss_pred CHHHHhcccCCcEEEEe----ccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCCCCc
Q 009519 399 SLLEVVRKVKPHVLLGL----SGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGSPFE 474 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~----S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGSPf~ 474 (533)
+|.|+++. .|+++=. ...-|.|+++.+..|. +..++.=.|.-.---|..-.+|++ +|+.--|.--=|.
T Consensus 190 ~l~ell~~--sDiv~l~~Plt~~T~~li~~~~l~~mk----~ga~lIN~aRG~~Vde~AL~~aL~--~g~i~gAaLDV~~ 261 (314)
T PRK06932 190 PFEEVLKQ--ADIVTLHCPLTETTQNLINAETLALMK----PTAFLINTGRGPLVDEQALLDALE--NGKIAGAALDVLV 261 (314)
T ss_pred CHHHHHHh--CCEEEEcCCCChHHhcccCHHHHHhCC----CCeEEEECCCccccCHHHHHHHHH--cCCccEEEEecCC
Confidence 69999988 8998732 1224899999999993 677877766543322323334444 5664434322221
Q ss_pred ceecCCCeeee--cccccceeechhhhHH
Q 009519 475 NVDLGNGKIGH--VNQANNMYLFPGIGLG 501 (533)
Q Consensus 475 pv~~~~G~~~~--p~Q~NN~~iFPGiglG 501 (533)
+-..+....+. -.+..|+++-|=++-.
T Consensus 262 ~EP~~~~~pl~~~~~~~pnvilTPHia~~ 290 (314)
T PRK06932 262 KEPPEKDNPLIQAAKRLPNLLITPHIAWA 290 (314)
T ss_pred CCCCCCCChhhHhhcCCCCEEECCccccC
Confidence 11111000010 0146799999988743
No 239
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=74.48 E-value=4.5 Score=42.58 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=41.8
Q ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc-hhHHHHHHHHHHHH
Q 009519 297 QGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA-GSAGLGVLKMAVQA 345 (533)
Q Consensus 297 QGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GA-GsAg~GiA~ll~~~ 345 (533)
-+||-++.-+++.+...+|.+|++ ..+.|+|| |..|.+||+.|..-
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsq---atvaivGa~G~Ia~~Iar~la~~ 190 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQ---ATVAIVGATGDIASAIARWLAPK 190 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHH---CeEEEecCCchHHHHHHHHhccc
Confidence 468888899999999999999999 99999998 99999999998763
No 240
>PRK08291 ectoine utilization protein EutC; Validated
Probab=74.45 E-value=14 Score=38.62 Aligned_cols=106 Identities=15% Similarity=0.133 Sum_probs=59.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
++++|+|+|..|..++..+... .++ ++|.++|+. .+ ........+.+... .. .....++.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~--~a~~l~~~~~~~~g-~~-v~~~~d~~~a 194 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AA--KAEAYAADLRAELG-IP-VTVARDVHEA 194 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HH--HHHHHHHHHhhccC-ce-EEEeCCHHHH
Confidence 6899999999988887766542 233 478888762 11 12222222221100 00 0123678999
Q ss_pred hcccCCcEEEEeccC-CCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccCCHHH
Q 009519 404 VRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAECTAAD 456 (533)
Q Consensus 404 V~~vkptvLIG~S~~-~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~tpe~ 456 (533)
++. +|++|-++.. .-.|+.++++.- ..|+.--|+ |.+ .|+.|+-
T Consensus 195 l~~--aDiVi~aT~s~~p~i~~~~l~~g------~~v~~vg~d~~~~-rEld~~~ 240 (330)
T PRK08291 195 VAG--ADIIVTTTPSEEPILKAEWLHPG------LHVTAMGSDAEHK-NEIAPAV 240 (330)
T ss_pred Hcc--CCEEEEeeCCCCcEecHHHcCCC------ceEEeeCCCCCCc-ccCCHHH
Confidence 987 8999876543 356777776532 123222233 333 4888765
No 241
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=73.99 E-value=16 Score=38.49 Aligned_cols=129 Identities=17% Similarity=0.130 Sum_probs=74.8
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc--ccCC-CCCChhhhccccccCCcCCccCCCC
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi--~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
.||.|+|| |..|..+|-.|+.. |+-.-.=...+.|+|.+.-. ..+. -+|.+...++.... . ...+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~-~-----i~~~ 71 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG-----EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEI-V-----ITDD 71 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-----cccCCCCceEEEEEecCCcccccceeehhhhhccccccCce-E-----EecC
Confidence 59999999 99999988877653 33100001379999985422 1111 23443332332211 1 1134
Q ss_pred HHHHhcccCCcEEEEeccC---CCC-----------CCHHHHHHhhhcCC-CCCeEEecCCCCCcccCCHHHHhcccCC-
Q 009519 400 LLEVVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDS-VKPAIFAMSNPTMNAECTAADAFKHAGE- 463 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~---~g~-----------Fteevv~~Ma~~~~-erPIIFaLSNPt~~aE~tpe~A~~wt~G- 463 (533)
..+.+++ .|++|=+.+. +|- +=+++.+.+.+ ++ +.-||+-.|||.. +..--+++++.|
T Consensus 72 ~~~~~~d--aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~-~~~~~~iiivvsNPvD---~~t~~~~k~sg~~ 145 (322)
T cd01338 72 PNVAFKD--ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALND-VASRDVKVLVVGNPCN---TNALIAMKNAPDI 145 (322)
T ss_pred cHHHhCC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHh-hCCCCeEEEEecCcHH---HHHHHHHHHcCCC
Confidence 5677888 8998844443 341 12455666643 77 4889999999984 666666666521
Q ss_pred --cEEEec
Q 009519 464 --NIVFAS 469 (533)
Q Consensus 464 --rai~At 469 (533)
+-+|++
T Consensus 146 p~~~ViG~ 153 (322)
T cd01338 146 PPDNFTAM 153 (322)
T ss_pred ChHheEEe
Confidence 336665
No 242
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=73.94 E-value=5 Score=44.98 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=26.1
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.+++ .+++|+|||.+|.+|+..|.+ .|. +|+++|+
T Consensus 376 ~~~~---k~vlIlGaGGagrAia~~L~~-----~G~-------~V~i~nR 410 (529)
T PLN02520 376 PLAG---KLFVVIGAGGAGKALAYGAKE-----KGA-------RVVIANR 410 (529)
T ss_pred CCCC---CEEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEcC
Confidence 4555 899999999777777766654 342 6888886
No 243
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=73.90 E-value=2.1 Score=51.67 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=33.5
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++|.+ .||+++|||+.|.-+++.|+.+++ ..|- ..+|.++|-+
T Consensus 415 ~kL~~---~kVlvvGaGGlG~e~lknLal~Gv-~~~~-----~G~i~IvD~D 457 (1008)
T TIGR01408 415 QKLQN---LNIFLVGCGAIGCEMLKNFALMGV-GTGK-----KGMITVTDPD 457 (1008)
T ss_pred HHHhh---CcEEEECCChHHHHHHHHHHHhCC-CcCC-----CCeEEEECCC
Confidence 34556 999999999999999999988755 1111 2589999986
No 244
>PRK07340 ornithine cyclodeaminase; Validated
Probab=73.85 E-value=26 Score=36.44 Aligned_cols=104 Identities=11% Similarity=0.070 Sum_probs=63.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.+++|+|+|..|...++.++.. .+. ++|+++|+. .++ .......+.+...+ ....+++|+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~----~~~------~~v~v~~r~----~~~--a~~~a~~~~~~~~~----~~~~~~~~a 185 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAG----LPV------RRVWVRGRT----AAS--AAAFCAHARALGPT----AEPLDGEAI 185 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHh----CCC------CEEEEEcCC----HHH--HHHHHHHHHhcCCe----eEECCHHHH
Confidence 8999999999998888887753 233 478888773 111 11222222111000 013578999
Q ss_pred hcccCCcEEEEeccCC-CCCCHHHHHHhhhcCCCCCeEEecCCCC-CcccCCHHHH
Q 009519 404 VRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPT-MNAECTAADA 457 (533)
Q Consensus 404 V~~vkptvLIG~S~~~-g~Fteevv~~Ma~~~~erPIIFaLSNPt-~~aE~tpe~A 457 (533)
++. .|++|-++..+ .+|+. ++| +.--|-++.-.+ .+.|+.+|-.
T Consensus 186 v~~--aDiVitaT~s~~Pl~~~-~~~-------~g~hi~~iGs~~p~~~El~~~~~ 231 (304)
T PRK07340 186 PEA--VDLVVTATTSRTPVYPE-AAR-------AGRLVVAVGAFTPDMAELAPRTV 231 (304)
T ss_pred hhc--CCEEEEccCCCCceeCc-cCC-------CCCEEEecCCCCCCcccCCHHHH
Confidence 986 99999876543 45654 332 445666666533 3679998744
No 245
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=73.72 E-value=21 Score=37.67 Aligned_cols=121 Identities=20% Similarity=0.177 Sum_probs=72.5
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc--ccCC-CCCChhhhccccccCCcCCccCCCC
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI--TKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi--~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
-||.|+|| |..|..+|-.|+.. |+-.-+=...|.|+|.+.-. ..+. -+|.+..-++-+.. ....+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~-----~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~------~i~~~ 72 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG-----ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGV------VATTD 72 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC-----CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCc------EEecC
Confidence 58999998 99999999987752 33200011279999986311 1111 13333321222111 01234
Q ss_pred HHHHhcccCCcEEEEeccC---CCC-----------CCHHHHHHhhhcCCC-CCeEEecCCCCCcccCCHHHHhccc
Q 009519 400 LLEVVRKVKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSV-KPAIFAMSNPTMNAECTAADAFKHA 461 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~---~g~-----------Fteevv~~Ma~~~~e-rPIIFaLSNPt~~aE~tpe~A~~wt 461 (533)
..+.+++ .|++|=+.+. +|- +=+++++.+++ +++ .-||+--|||.. +..--+++++
T Consensus 73 ~~~~~~d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~-~~~~~~iiivvsNPvD---v~t~v~~k~s 143 (323)
T TIGR01759 73 PEEAFKD--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNK-VAKKDVKVLVVGNPAN---TNALIASKNA 143 (323)
T ss_pred hHHHhCC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHh-hCCCCeEEEEeCCcHH---HHHHHHHHHc
Confidence 6677888 8998844443 331 22456667754 776 899999999984 6666777766
No 246
>PRK06823 ornithine cyclodeaminase; Validated
Probab=73.61 E-value=20 Score=37.70 Aligned_cols=108 Identities=12% Similarity=0.085 Sum_probs=67.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.++.|+|+|.-+...++.++... .+ ++|+++|+. .++ ...+...+.+...+. ....+.+|+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~----~i------~~v~v~~r~----~~~--a~~~~~~~~~~~~~v---~~~~~~~~a 189 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVT----DC------RQLWVWGRS----ETA--LEEYRQYAQALGFAV---NTTLDAAEV 189 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcC----CC------CEEEEECCC----HHH--HHHHHHHHHhcCCcE---EEECCHHHH
Confidence 68999999999888887766531 22 688888762 211 222222221111110 124679999
Q ss_pred hcccCCcEEEEeccC-CCCCCHHHHHHhhhcCCCCCeEEecCCCCC-cccCCHHHHhc
Q 009519 404 VRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTM-NAECTAADAFK 459 (533)
Q Consensus 404 V~~vkptvLIG~S~~-~g~Fteevv~~Ma~~~~erPIIFaLSNPt~-~aE~tpe~A~~ 459 (533)
|+. +||++-+.+. ..+|..++++ +.-.|-+...-+| +.|+.++-..+
T Consensus 190 v~~--ADIV~taT~s~~P~~~~~~l~-------~G~hi~~iGs~~p~~~Eld~~~l~~ 238 (315)
T PRK06823 190 AHA--ANLIVTTTPSREPLLQAEDIQ-------PGTHITAVGADSPGKQELDAELVAR 238 (315)
T ss_pred hcC--CCEEEEecCCCCceeCHHHcC-------CCcEEEecCCCCcccccCCHHHHhh
Confidence 988 9999976543 4678888876 3445777765443 66999876543
No 247
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=73.28 E-value=3.3 Score=42.62 Aligned_cols=105 Identities=24% Similarity=0.294 Sum_probs=56.5
Q ss_pred CceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcC-CccCCCCH
Q 009519 323 DQKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFM-GLREGASL 400 (533)
Q Consensus 323 ~~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~-~~~~~~~L 400 (533)
..||+|.|| |-.|..+++.|++. | .+++.+|++-- ......+ ..........+. ...+..++
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~-----G-------~~V~~~~r~~~---~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~ 67 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLEL-----G-------AEVYGYSLDPP---TSPNLFE-LLNLAKKIEDHFGDIRDAAKL 67 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHC-----C-------CEEEEEeCCCc---cchhHHH-HHhhcCCceEEEccCCCHHHH
Confidence 379999997 77888888777753 4 26887776521 1011100 000000000000 01123467
Q ss_pred HHHhcccCCcEEEEeccCCCC----------------CCHHHHHHhhhcCC-CCCeEEecC
Q 009519 401 LEVVRKVKPHVLLGLSGVGGV----------------FNEEVLKAMRESDS-VKPAIFAMS 444 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~----------------Fteevv~~Ma~~~~-erPIIFaLS 444 (533)
.++++..+||++|=+.+.+.. .+..+++.+.. .+ .+.+||.=|
T Consensus 68 ~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~-~~~~~~iv~~SS 127 (349)
T TIGR02622 68 RKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRA-IGSVKAVVNVTS 127 (349)
T ss_pred HHHHhhcCCCEEEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHh-cCCCCEEEEEec
Confidence 888888889999977654211 13445666643 33 357888644
No 248
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=72.53 E-value=7.1 Score=42.66 Aligned_cols=190 Identities=10% Similarity=0.132 Sum_probs=96.0
Q ss_pred ccccCChhhHHHHHhcCCCCCeeEE-EEecCceeeccCCCCCCcccccch-hhhhH------hhhcCCCCCceecEEeec
Q 009519 151 YFSAKDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIG-KLDVY------VAAAGINPQRILPVMLDV 222 (533)
Q Consensus 151 yis~~d~~~i~~~l~n~p~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~~G-Kl~LY------~a~aGI~P~~~lPI~LDv 222 (533)
|-...|-..+.++|... ++++. +++.++.+=-|-..+-..+-|... ....+ ..+ ||. .+...
T Consensus 206 ~~~~~d~~el~~lL~~~---Gl~v~~~~~~~~s~eei~~~~~A~lniv~~~~~~~~~a~~L~e~~-GiP---~~~~~--- 275 (456)
T TIGR01283 206 FNVAGEFWHVKPLLEKL---GIRVLATITGDSRYAEVQTAHRAKLNMVQCSKSMINLARKMEEKY-GIP---YFEGS--- 275 (456)
T ss_pred CCCcccHHHHHHHHHHc---CCeEEEEeCCCCcHHHHHhcccCcEEEEECHhHHHHHHHHHHHHc-CCC---EEecC---
Confidence 43344666788888864 56765 567776666666666655555432 12212 222 443 22111
Q ss_pred cCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhccCceeccCcchhHHH
Q 009519 223 GTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGV 302 (533)
Q Consensus 223 GTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV 302 (533)
++|+ +-.++|++.+.+.+..- ++ ..++-++.++.+.+
T Consensus 276 ------------~~G~-----------~~T~~~L~~Ia~~lg~~-----~~-~~~~~~~i~~e~~~-------------- 312 (456)
T TIGR01283 276 ------------FYGI-----------EDTSKALRDIADLFGDE-----EL-LKRTEELIAREEAK-------------- 312 (456)
T ss_pred ------------CCcH-----------HHHHHHHHHHHHHhCCh-----HH-HHHHHHHHHHHHHH--------------
Confidence 1332 34678888887776421 00 01233344444433
Q ss_pred HHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhh
Q 009519 303 ALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA 382 (533)
Q Consensus 303 ~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~ 382 (533)
+..++.-....|.. .|+++++.+.-..+++++|.+ .|+ .+..+.+. ....++....+.
T Consensus 313 ----~~~~l~~~~~~L~G---krv~i~~g~~~~~~l~~~l~e-----lGm-------evv~~~t~---~~~~~d~~~l~~ 370 (456)
T TIGR01283 313 ----IRPALEPYRERLKG---KKAAIYTGGVKSWSLVSALQD-----LGM-------EVVATGTQ---KGTEEDYARIRE 370 (456)
T ss_pred ----HHHHHHHHHHHcCC---CEEEEEcCCchHHHHHHHHHH-----CCC-------EEEEEeee---cCCHHHHHHHHH
Confidence 23333334445566 899999888888999988755 465 23333221 111111111111
Q ss_pred ccccccCCcCCccCCCCHHHHhcccCCcEEEEec
Q 009519 383 PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS 416 (533)
Q Consensus 383 ~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S 416 (533)
.+ .+........+...+++.++..+||++||-|
T Consensus 371 ~~-~~~~~v~~~~d~~e~~~~i~~~~pDl~ig~~ 403 (456)
T TIGR01283 371 LM-GEGTVMLDDANPRELLKLLLEYKADLLIAGG 403 (456)
T ss_pred Hc-CCCeEEEeCCCHHHHHHHHhhcCCCEEEEcc
Confidence 11 1000000001224588888999999999854
No 249
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=72.16 E-value=3.2 Score=43.39 Aligned_cols=32 Identities=34% Similarity=0.549 Sum_probs=28.4
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||+++|+|.-|.-+++.|+.+++ ++|.++|-+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gv-----------g~I~IvD~D 32 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGF-----------RNIHVIDMD 32 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-----------CeEEEECCC
Confidence 68999999999999999987644 699999987
No 250
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=71.86 E-value=3.5 Score=43.34 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=27.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
.+|+|+|||-+|+.+|..|.+. | .++.++|++-
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-----g-------~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-----G-------YQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCCC
Confidence 4899999999999999999863 4 3689999864
No 251
>PRK06475 salicylate hydroxylase; Provisional
Probab=71.68 E-value=3.3 Score=43.56 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.4
Q ss_pred CceEEEeCchhHHHHHHHHHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~ 344 (533)
++||+|+|||.||+..|-.|.+
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~ 23 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAA 23 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHh
Confidence 4899999999999999988754
No 252
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=71.20 E-value=13 Score=41.20 Aligned_cols=99 Identities=19% Similarity=0.199 Sum_probs=61.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
.|-|+|.|..|..+|..|.+. |. ++++.|+. .. .....++.+... . +.....++.|++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~v~drt----~~--~~~~l~~~~~~g-~---~~~~~~s~~e~v 58 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-----GF-------TVSVYNRT----PE--KTDEFLAEHAKG-K---KIVGAYSIEEFV 58 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-----CC-------eEEEEeCC----HH--HHHHHHhhccCC-C---CceecCCHHHHH
Confidence 378999999999999999764 43 57777762 11 122221111100 0 001235688888
Q ss_pred ccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCC
Q 009519 405 RKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNP 446 (533)
Q Consensus 405 ~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNP 446 (533)
+.. +|+++| ++-.+|...+++++.+.....+..||.=.||=
T Consensus 59 ~~l~~~dvIi-l~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns 100 (467)
T TIGR00873 59 QSLERPRKIM-LMVKAGAPVDAVINQLLPLLEKGDIIIDGGNS 100 (467)
T ss_pred hhcCCCCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEECCCc
Confidence 653 588665 34346778888988876545677899999983
No 253
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=70.57 E-value=4.4 Score=42.77 Aligned_cols=32 Identities=38% Similarity=0.584 Sum_probs=28.5
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||+++|+|.-|.-+++.|+.+++ ++|.++|.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gv-----------g~ItIvD~D 32 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGF-----------GEIHIIDLD 32 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcC-----------CeEEEEcCC
Confidence 68999999999999999987654 689999986
No 254
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=70.23 E-value=31 Score=35.78 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=26.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.||.|+|+|..|-+|+.-|+.... ++ ..+|+++|+
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~----~~----~~~I~v~~~ 36 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGA----LP----PEEIIVTNR 36 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCC----CC----cceEEEeCC
Confidence 689999999999999888876421 33 257887766
No 255
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=70.06 E-value=3.7 Score=43.74 Aligned_cols=31 Identities=35% Similarity=0.646 Sum_probs=24.2
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|+|+|||.||...|..+... |+ ++.++|++
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~-----G~-------~V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASA-----GI-------QTFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhC-----CC-------cEEEEecC
Confidence 699999999999999887653 54 46666654
No 256
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=69.83 E-value=1.3e+02 Score=30.52 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=33.2
Q ss_pred CcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcE
Q 009519 409 PHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENI 465 (533)
Q Consensus 409 ptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Gra 465 (533)
+|++. .++..+++.++..++ ..+.|+++-++.... +.++++..++.=-++
T Consensus 174 AD~v~----v~~~~~~~~~~~~~~-~~~~Pl~~~~~~~~~--~~~~~~l~~lG~~~v 223 (243)
T cd00377 174 ADGIF----VEGLKDPEEIRAFAE-APDVPLNVNMTPGGN--LLTVAELAELGVRRV 223 (243)
T ss_pred CCEEE----eCCCCCHHHHHHHHh-cCCCCEEEEecCCCC--CCCHHHHHHCCCeEE
Confidence 56554 234448899999976 567899886554332 689999988743333
No 257
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=69.80 E-value=4.2 Score=42.09 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=27.0
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..+|+|+|||.||+..|-+|.+.- +.|. ++.++|++
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~--~~G~-------~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLS--HGGL-------PVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcc--cCCC-------EEEEEeCC
Confidence 367999999999999999887630 1254 57777773
No 258
>PRK07236 hypothetical protein; Provisional
Probab=69.76 E-value=4.3 Score=42.45 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.0
Q ss_pred CCceEEEeCchhHHHHHHHHHHHH
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
...+|+|+|||.||+..|..|.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~ 28 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRA 28 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC
Confidence 348999999999999999998764
No 259
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=69.66 E-value=20 Score=39.51 Aligned_cols=22 Identities=5% Similarity=0.122 Sum_probs=19.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.|++|+|-+.-..++++.|.+.
T Consensus 312 krvai~~~~~~~~~la~~L~el 333 (455)
T PRK14476 312 KRVAIAAEPDLLLALGSFLAEM 333 (455)
T ss_pred CEEEEEeCHHHHHHHHHHHHHC
Confidence 8999999999999999988864
No 260
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=69.65 E-value=4.4 Score=44.51 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=19.7
Q ss_pred CceEEEeCchhHHHHHHHHHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~ 344 (533)
+.+|+|+|||+||+..|..+.+
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~ 31 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRR 31 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHh
Confidence 3799999999999999988865
No 261
>PRK07589 ornithine cyclodeaminase; Validated
Probab=69.47 E-value=29 Score=37.14 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=64.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.++.|+|+|.-+..-++.++... .+ ++|+++|+. .. ....+...+.+..-+. ....+++|+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr----~i------~~V~v~~r~----~~--~a~~~~~~~~~~~~~v---~~~~~~~~a 190 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALL----GI------EEIRLYDID----PA--ATAKLARNLAGPGLRI---VACRSVAEA 190 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhC----Cc------eEEEEEeCC----HH--HHHHHHHHHHhcCCcE---EEeCCHHHH
Confidence 68999999998887777776642 22 678888662 11 1222222222111011 124679999
Q ss_pred hcccCCcEEEEeccCC---CCCCHHHHHHhhhcCCCCCeEEec-CCCCCcccCCHHHH
Q 009519 404 VRKVKPHVLLGLSGVG---GVFNEEVLKAMRESDSVKPAIFAM-SNPTMNAECTAADA 457 (533)
Q Consensus 404 V~~vkptvLIG~S~~~---g~Fteevv~~Ma~~~~erPIIFaL-SNPt~~aE~tpe~A 457 (533)
|++ .||++.++... -+|..++++. .--|-++ |+--.+.|+.++-.
T Consensus 191 v~~--ADIIvtaT~S~~~~Pvl~~~~lkp-------G~hV~aIGs~~p~~~Eld~~~l 239 (346)
T PRK07589 191 VEG--ADIITTVTADKTNATILTDDMVEP-------GMHINAVGGDCPGKTELHPDIL 239 (346)
T ss_pred Hhc--CCEEEEecCCCCCCceecHHHcCC-------CcEEEecCCCCCCcccCCHHHH
Confidence 998 99999876532 4588888863 1124444 44334569988753
No 262
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=69.21 E-value=4 Score=42.87 Aligned_cols=31 Identities=26% Similarity=0.527 Sum_probs=24.6
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.|+|+|||.||...|..|.+. |+ ++.++|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~-----G~-------~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARA-----GI-------ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 489999999999999887653 54 46777776
No 263
>PRK06184 hypothetical protein; Provisional
Probab=69.20 E-value=4.3 Score=44.29 Aligned_cols=34 Identities=29% Similarity=0.524 Sum_probs=26.9
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
+..|+|+|||.+|+..|-+|.+. |+ ++.++|+.-
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~-----Gi-------~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR-----GV-------SFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEeCCC
Confidence 47899999999999999888654 54 467777653
No 264
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=69.02 E-value=46 Score=37.58 Aligned_cols=194 Identities=15% Similarity=0.170 Sum_probs=116.6
Q ss_pred ChhhhhHhHHHHHHHHHHhC-CCceeeeecCC--CchHHHHHHHHhccC----------cee----ccCcchhHHHHHHH
Q 009519 244 EGEEYLSIVDEFMEAVHARW-PKAIVQFEDFQ--MKWAFETLERYRKRF----------CMF----NDDIQGTAGVALAG 306 (533)
Q Consensus 244 ~g~eY~~~vdefv~av~~~~-P~~~I~~EDf~--~~~af~iL~ryr~~~----------~~F----nDDiQGTaaV~LAg 306 (533)
+..|-..+.-.||..+.+.- |..-+==+|++ ...---++..|+..+ +.- |+-.-.|+-=+..+
T Consensus 156 s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~ATG~GV~~y 235 (514)
T KOG2250|consen 156 SDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEATGRGVVYY 235 (514)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccccchhHHHH
Confidence 33454555556666555533 77666667765 233445788888642 222 33333355444444
Q ss_pred HHHHHHHhC--CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhh-c
Q 009519 307 LLGTVRAQG--LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA-P 383 (533)
Q Consensus 307 li~Alr~~g--~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~-~ 383 (533)
+=+=++-.+ +.++. .|+++-|-|--|...|..|.+... +-|-+-|++|.|.+.. .++..+. .
T Consensus 236 ~e~~~~~~~~~~~~kg---kr~~i~G~Gnv~~~aa~~l~~~G~-----------kvvavsD~~G~l~np~-Gid~~eL~~ 300 (514)
T KOG2250|consen 236 VEAILNDANGKKGIKG---KRVVIQGFGNVGGHAAKKLSEKGA-----------KVVAVSDSKGVLINPD-GIDIEELLD 300 (514)
T ss_pred HHHHHHhccCCCCcCc---eEEEEeCCCchHHHHHHHHHhcCC-----------EEEEEEcCceeEECCC-CCCHHHHHH
Confidence 433333344 66777 999999999999999998887643 5688899999988754 3333221 2
Q ss_pred cccccCCcCCccCCC----------CHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC-CCCcccC
Q 009519 384 FAKDPGDFMGLREGA----------SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN-PTMNAEC 452 (533)
Q Consensus 384 ~A~~~~~~~~~~~~~----------~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN-Pt~~aE~ 452 (533)
++......++.+... .+.--|. +.|+++=+.++ +.+|.+=.+..-++++ |+|.==|| ||. -
T Consensus 301 ~~~~k~~i~~f~~~~~~~~~~~~~~~~~~~v~--~~DI~vPCA~q-n~I~~~nA~~lvak~~--~~IvEGAN~ptT---p 372 (514)
T KOG2250|consen 301 LADEKKTIKSFDGAKLSYEGYIAGLPPWTLVE--KCDILVPCATQ-NEITGENAKALVAKGC--KYIVEGANMPTT---P 372 (514)
T ss_pred HHHhhccccccccccccCccccccCcchhhHh--hCcEEeecCcc-CcccHhhHHHHHhcCC--cEEEecCCCCCC---h
Confidence 222110000000000 0122233 48999999997 9999988888865455 89999999 664 3
Q ss_pred CHHHHhcc
Q 009519 453 TAADAFKH 460 (533)
Q Consensus 453 tpe~A~~w 460 (533)
.+.++++-
T Consensus 373 eA~~vlek 380 (514)
T KOG2250|consen 373 EADEVLEK 380 (514)
T ss_pred hHHHHHHh
Confidence 34566663
No 265
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=68.72 E-value=6.8 Score=41.94 Aligned_cols=68 Identities=25% Similarity=0.344 Sum_probs=44.9
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCcc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLR 395 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~ 395 (533)
.++..|++.+|.|+|-|+.|.++|+.|... |+ +++..|+.+ .. . ..|+.. +.
T Consensus 9 ~~~~~LkgKtVGIIG~GsIG~amA~nL~d~-----G~-------~ViV~~r~~---~s---~-----~~A~~~----G~- 60 (335)
T PRK13403 9 ANVELLQGKTVAVIGYGSQGHAQAQNLRDS-----GV-------EVVVGVRPG---KS---F-----EVAKAD----GF- 60 (335)
T ss_pred CChhhhCcCEEEEEeEcHHHHHHHHHHHHC-----cC-------EEEEEECcc---hh---h-----HHHHHc----CC-
Confidence 455666779999999999999999999775 44 566666531 10 1 112110 00
Q ss_pred CCCCHHHHhcccCCcEEE
Q 009519 396 EGASLLEVVRKVKPHVLL 413 (533)
Q Consensus 396 ~~~~L~e~V~~vkptvLI 413 (533)
...++.|+++. +|+++
T Consensus 61 ~v~sl~Eaak~--ADVV~ 76 (335)
T PRK13403 61 EVMSVSEAVRT--AQVVQ 76 (335)
T ss_pred EECCHHHHHhc--CCEEE
Confidence 12479999988 88876
No 266
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=68.64 E-value=2.8 Score=42.37 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=27.7
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
+..|+|+|||.||+..|..+.+ .|+ ++.++|++--
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~-----~G~-------~V~liEk~~~ 59 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK-----AGL-------KVAVFERKLS 59 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh-----CCC-------eEEEEecCCC
Confidence 3789999999999999987754 354 6888887643
No 267
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=68.45 E-value=5.3 Score=39.72 Aligned_cols=33 Identities=30% Similarity=0.577 Sum_probs=27.7
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
.|+|+|||-+|+.+|..|.+ .|. ++.++|+..+
T Consensus 1 DvvIIGaGi~G~~~A~~La~-----~G~-------~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-----RGH-------SVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-----TTS-------EEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEeeccc
Confidence 38999999999999999886 353 7999999833
No 268
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=68.42 E-value=13 Score=37.58 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=24.9
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||.|+|+|..|.++|..|... |. +++++|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-----G~-------~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-----GY-------QLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 588999999999999998753 43 57777764
No 269
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=68.30 E-value=95 Score=32.05 Aligned_cols=112 Identities=11% Similarity=0.104 Sum_probs=55.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
++++|+|+|..|+..+.++..++ |- .+++.+|+. +.|..+|+.... . ..+.+.
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~----g~------~~vi~~~~~-----------~~k~~~a~~~~~-----~-~~~~~~ 217 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIY----PE------SKLVVFGKH-----------QEKLDLFSFADE-----T-YLIDDI 217 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhc----CC------CcEEEEeCc-----------HhHHHHHhhcCc-----e-eehhhh
Confidence 69999999988877766665421 21 368877752 223334432110 0 111222
Q ss_pred hcccCCcEEEEeccCC---CCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEec
Q 009519 404 VRKVKPHVLLGLSGVG---GVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFAS 469 (533)
Q Consensus 404 V~~vkptvLIG~S~~~---g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~At 469 (533)
.+....|+.|=+++.. .+| ++.++.|+ ..-+=+++.++. ...++.+.+.+. .+.-|..+
T Consensus 218 ~~~~g~d~viD~~G~~~~~~~~-~~~~~~l~--~~G~iv~~G~~~--~~~~~~~~~~~~--k~~~i~g~ 279 (341)
T cd08237 218 PEDLAVDHAFECVGGRGSQSAI-NQIIDYIR--PQGTIGLMGVSE--YPVPINTRMVLE--KGLTLVGS 279 (341)
T ss_pred hhccCCcEEEECCCCCccHHHH-HHHHHhCc--CCcEEEEEeecC--CCcccCHHHHhh--CceEEEEe
Confidence 3334578888766511 112 33455553 223334444432 223566665543 34445443
No 270
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=68.13 E-value=12 Score=38.11 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=25.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcC-CChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAG-NNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~G-ls~~eA~~~i~lvD~~ 367 (533)
+||.|+|+|..|..+|..|... | ++ ..+++++|++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~-----g~~~----~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLET-----EVAT----PEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CCCC----cccEEEEeCC
Confidence 4799999999999999988653 3 21 1367777763
No 271
>PRK06847 hypothetical protein; Provisional
Probab=68.07 E-value=4.8 Score=41.44 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.1
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (533)
.+|+|+|||.||+..|..|.+
T Consensus 5 ~~V~IVGaG~aGl~~A~~L~~ 25 (375)
T PRK06847 5 KKVLIVGGGIGGLSAAIALRR 25 (375)
T ss_pred ceEEEECCCHHHHHHHHHHHh
Confidence 689999999999999998865
No 272
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=67.78 E-value=5.1 Score=43.73 Aligned_cols=34 Identities=29% Similarity=0.567 Sum_probs=28.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
-+++|+|||.+|+++|..|.++ |.+ ++.++|+..
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~-----g~~------~~~i~Ek~~ 42 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQA-----GVP------DFVIFEKRD 42 (443)
T ss_pred ccEEEECCCHHHHHHHHHHHHc-----CCC------cEEEEEccC
Confidence 6899999999999999999876 443 388888874
No 273
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=67.31 E-value=5.6 Score=39.15 Aligned_cols=34 Identities=21% Similarity=0.476 Sum_probs=27.9
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
|+..|+||+|+|..|..-++.|+++.. +|.+++.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga------------~VtVvsp 40 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA------------QLRVIAE 40 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC------------EEEEEcC
Confidence 344999999999999999999987532 7888876
No 274
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=67.13 E-value=7.2 Score=40.81 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=26.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
.+|||+|+|.||+..|+.|.+. +- .-+|.+++++.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~-----~~-----~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQ-----DA-----HIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhh-----Cc-----CCCEEEEeCCC
Confidence 5899999999999999988553 11 13677787644
No 275
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=67.00 E-value=29 Score=37.57 Aligned_cols=98 Identities=12% Similarity=0.194 Sum_probs=51.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCCh-hhhcc--ccccCCcCCccCCCCH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDP-AAAPF--AKDPGDFMGLREGASL 400 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~-~k~~~--A~~~~~~~~~~~~~~L 400 (533)
.|++|+|...-..++++.|.+. |+.. ..+. .+ +.. +...+ .+... .....+.-...+...+
T Consensus 300 k~v~i~~~~~~~~~l~~~L~e~-----G~~v----~~v~-~~-----~~~-~~~~~~~~~~~~~~~~~~~~v~~~d~~el 363 (428)
T cd01965 300 KRVAIAGDPDLLLGLSRFLLEM-----GAEP----VAAV-TG-----TDN-PPFEKRMELLASLEGIPAEVVFVGDLWDL 363 (428)
T ss_pred CEEEEEcChHHHHHHHHHHHHc-----CCcc----eEEE-Ec-----CCC-chhHHHHHHhhhhcCCCceEEECCCHHHH
Confidence 8999999999999999988764 4422 1111 11 111 11100 00000 0000000000133568
Q ss_pred HHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 401 LEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 401 ~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++.++..+||++||-|- .+.+-+.+ .-|.| ..|.|..
T Consensus 364 ~~~i~~~~pdliig~~~-----~~~~a~~~-----~ip~i-~~~~P~~ 400 (428)
T cd01965 364 ESLAKEEPVDLLIGNSH-----GRYLARDL-----GIPLV-RVGFPIF 400 (428)
T ss_pred HHHhhccCCCEEEECch-----hHHHHHhc-----CCCEE-EecCCch
Confidence 88899999999999773 23333333 46775 4666653
No 276
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=66.73 E-value=5.3 Score=39.93 Aligned_cols=38 Identities=34% Similarity=0.491 Sum_probs=31.8
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++|++ -|++++|+|.-|..+++.|+.+.+ ++++++|.+
T Consensus 26 ~~l~~---s~vlvvG~GglG~~~~~~la~aGv-----------g~l~i~D~d 63 (254)
T COG0476 26 QKLKD---SRVLVVGAGGLGSPAAKYLALAGV-----------GKLTIVDFD 63 (254)
T ss_pred HHHhh---CCEEEEecChhHHHHHHHHHHcCC-----------CeEEEEcCC
Confidence 44555 899999999999999999988755 569999985
No 277
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=66.22 E-value=5.4 Score=45.46 Aligned_cols=33 Identities=27% Similarity=0.610 Sum_probs=26.9
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~-----G~-------~V~V~E~~ 359 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARN-----GV-------AVTVYDRH 359 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 38999999999999999988763 43 57788864
No 278
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=66.17 E-value=26 Score=42.75 Aligned_cols=98 Identities=8% Similarity=0.079 Sum_probs=54.1
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhc------------Ce---EEE--EeccCcccc-CCCCCChhhhcc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFAR------------NK---FFL--LDKDGLITK-ERKNLDPAAAPF 384 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~------------~~---i~l--vD~~GLi~~-~r~~l~~~k~~~ 384 (533)
-.+|||.|+|..|.|.++++..... + =++.++-+ ++ +|- +.+.-.+.+ +...--+.+..|
T Consensus 203 P~~vVi~G~G~Vg~gA~~i~~~lg~-~-~v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~y~ 280 (1042)
T PLN02819 203 PLVFVFTGSGNVSQGAQEIFKLLPH-T-FVEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKADYY 280 (1042)
T ss_pred CeEEEEeCCchHHHHHHHHHhhcCC-C-ccCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhhhc
Confidence 4899999999999999998876633 1 12332221 11 221 111111111 111111122334
Q ss_pred ccccCCcCCccCC-CC-HHHHhcccCCcEEEEec----cCCCCCCHH-HHHHhh
Q 009519 385 AKDPGDFMGLREG-AS-LLEVVRKVKPHVLLGLS----GVGGVFNEE-VLKAMR 431 (533)
Q Consensus 385 A~~~~~~~~~~~~-~~-L~e~V~~vkptvLIG~S----~~~g~Ftee-vv~~Ma 431 (533)
+++. .+ .. +++++.. .|+|||.= ..|-++|++ +++.|.
T Consensus 281 ~~Pe-------~y~s~F~~~~~~~--advlIn~i~~~~~~P~lvt~~~~~~~mk 325 (1042)
T PLN02819 281 AHPE-------HYNPVFHEKIAPY--ASVIVNCMYWEKRFPRLLTTKQLQDLTR 325 (1042)
T ss_pred cCch-------hccchhHHHhHhh--CCEEEeeeecCCCCCceeCHHHHHHhhc
Confidence 4431 12 23 4568878 99999973 235679999 888894
No 279
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=66.16 E-value=2.9 Score=44.04 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=19.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.||+|+|||-||+..|..|.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~ 22 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKK 22 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHh
Confidence 3799999999999999999875
No 280
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=65.89 E-value=5.6 Score=40.81 Aligned_cols=92 Identities=16% Similarity=0.105 Sum_probs=48.3
Q ss_pred Hhccc--CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---ccc-----CCHHHHhcccCCcEE-E-ecC
Q 009519 403 VVRKV--KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NAE-----CTAADAFKHAGENIV-F-ASG 470 (533)
Q Consensus 403 ~V~~v--kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~---~aE-----~tpe~A~~wt~Grai-~-AtG 470 (533)
.++.+ +|+++|..++ ...-..++-..+ .+.+|=|.+=+.||.+ ..| -|.++++++. +.+ . +.|
T Consensus 105 ~l~~~~~~~~~il~snT-S~~~~~~la~~~--~~~~r~~g~hf~~P~~~~~lvElv~~~~T~~~~~~~~--~~~~~~~lg 179 (286)
T PRK07819 105 ELDKVVTDPDAVLASNT-SSIPIMKLAAAT--KRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARA--EEFASDVLG 179 (286)
T ss_pred HHHHhhCCCCcEEEECC-CCCCHHHHHhhc--CCCccEEEEecCCCcccCceEEEeCCCCCCHHHHHHH--HHHHHHhCC
Confidence 34444 6899997766 344444444433 2566767788888753 323 3334444433 112 2 233
Q ss_pred CCCcceecCCCeeeecccccceeechhhhHHHHHh
Q 009519 471 SPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLS 505 (533)
Q Consensus 471 SPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~ 505 (533)
. .||..+ ..||-.=|-..+|-+--++-+.
T Consensus 180 k--~pv~v~----d~pGfi~nRi~~~~~~Ea~~ll 208 (286)
T PRK07819 180 K--QVVRAQ----DRSGFVVNALLVPYLLSAIRMV 208 (286)
T ss_pred C--CceEec----CCCChHHHHHHHHHHHHHHHHH
Confidence 1 233331 4566666777777666555443
No 281
>PRK07233 hypothetical protein; Provisional
Probab=65.88 E-value=4.8 Score=41.96 Aligned_cols=31 Identities=32% Similarity=0.558 Sum_probs=24.7
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||+|+|||-||+..|..|.+. |. ++.+++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-----G~-------~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-----GH-------EVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEEeC
Confidence 689999999999999888763 43 56677665
No 282
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=65.73 E-value=5.7 Score=43.34 Aligned_cols=32 Identities=34% Similarity=0.645 Sum_probs=26.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+|+|+|+|.||+..|..+... |. ++.++|+.
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~-----G~-------~V~vie~~ 175 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARA-----GH-------KVTVFERA 175 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------cEEEEecC
Confidence 7999999999999999888653 43 58888865
No 283
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=65.66 E-value=6.4 Score=37.14 Aligned_cols=25 Identities=12% Similarity=0.278 Sum_probs=21.7
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHH
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
|+..||||+|+|..|.-.++.|+++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ 35 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDT 35 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC
Confidence 4449999999999999999988875
No 284
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=65.39 E-value=5.9 Score=42.02 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=27.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi 370 (533)
-.|+|+|||.||...|..+.+. |+ ++.++|++..+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~-----G~-------~VlvlEk~~~~ 38 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKA-----GL-------DVLVLEKGSEP 38 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHc-----CC-------eEEEEecCCCC
Confidence 4699999999999999999875 43 57777776544
No 285
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=65.39 E-value=5 Score=42.02 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.+|+|+|||.||+..|-.|.+.
T Consensus 19 ~dV~IvGaG~aGl~~A~~L~~~ 40 (415)
T PRK07364 19 YDVAIVGGGIVGLTLAAALKDS 40 (415)
T ss_pred cCEEEECcCHHHHHHHHHHhcC
Confidence 6899999999999999998653
No 286
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=65.37 E-value=6 Score=43.30 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=28.3
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+||||+|+|-+|+..|..|.... . .-+|.+||++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~------~----~~~itLVd~~ 37 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKL------P----DVEITLVDRR 37 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcC------C----CCcEEEEeCC
Confidence 489999999999999999987753 0 1368899985
No 287
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=65.13 E-value=62 Score=34.11 Aligned_cols=195 Identities=16% Similarity=0.158 Sum_probs=103.0
Q ss_pred cCceeccCc---chhHHHHHHHHHHHHHHh---------CC---------CCCCCCCceEEEeCchhHHHHHHHHHHHHH
Q 009519 288 RFCMFNDDI---QGTAGVALAGLLGTVRAQ---------GL---------SLTDFADQKIVVVGAGSAGLGVLKMAVQAA 346 (533)
Q Consensus 288 ~~~~FnDDi---QGTaaV~LAgli~Alr~~---------g~---------~l~dl~~~riv~~GAGsAg~GiA~ll~~~~ 346 (533)
-++|.|--- ..+|=-+++.+|+.+|-. |+ .-.+|..+++.|+|.|..|..+|+.+..+
T Consensus 89 gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~- 167 (323)
T PRK15409 89 KILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFG- 167 (323)
T ss_pred CCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhc-
Confidence 455555322 235555677777766631 10 01245569999999999999999987622
Q ss_pred HHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEe-c---cCCCCC
Q 009519 347 ARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL-S---GVGGVF 422 (533)
Q Consensus 347 ~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~-S---~~~g~F 422 (533)
-|+ ++...|+.. . .+....+ . ....+|.|+++. .|+++=. . ..-|.|
T Consensus 168 ---fgm-------~V~~~~~~~-----~---~~~~~~~---~------~~~~~l~ell~~--sDvv~lh~plt~~T~~li 218 (323)
T PRK15409 168 ---FNM-------PILYNARRH-----H---KEAEERF---N------ARYCDLDTLLQE--SDFVCIILPLTDETHHLF 218 (323)
T ss_pred ---CCC-------EEEEECCCC-----c---hhhHHhc---C------cEecCHHHHHHh--CCEEEEeCCCChHHhhcc
Confidence 133 566566421 0 0000011 0 012479999988 8987632 1 113899
Q ss_pred CHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHh-cc-cCCcEEEecCCCCcceecCCCeeeecccccceeechhhhH
Q 009519 423 NEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAF-KH-AGENIVFASGSPFENVDLGNGKIGHVNQANNMYLFPGIGL 500 (533)
Q Consensus 423 teevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~-~w-t~Grai~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGigl 500 (533)
+++.++.|. +..++.=.|.= ++--|+|+ ++ .+|+.--|.=-=|++-..+.. ..--...|+.+-|=+|-
T Consensus 219 ~~~~l~~mk----~ga~lIN~aRG----~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~--~pL~~~~nvilTPHia~ 288 (323)
T PRK15409 219 GAEQFAKMK----SSAIFINAGRG----PVVDENALIAALQKGEIHAAGLDVFEQEPLSVD--SPLLSLPNVVAVPHIGS 288 (323)
T ss_pred CHHHHhcCC----CCeEEEECCCc----cccCHHHHHHHHHcCCeeEEEeecCCCCCCCCC--chhhcCCCEEEcCcCCC
Confidence 999999993 56677766543 33333322 22 366644332111221111101 11123568999998874
Q ss_pred HHHHhCCcccCHHHHHHHHHHHhcccC
Q 009519 501 GTLLSGARFITDGMLQQAAEWYVCDNC 527 (533)
Q Consensus 501 G~l~~~a~~Itd~M~~aAA~alA~~v~ 527 (533)
....++ ..|...+++.+.+...
T Consensus 289 ~t~e~~-----~~~~~~~~~ni~~~~~ 310 (323)
T PRK15409 289 ATHETR-----YNMAACAVDNLIDALQ 310 (323)
T ss_pred CcHHHH-----HHHHHHHHHHHHHHHc
Confidence 433322 3344444444444433
No 288
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=65.06 E-value=6.6 Score=36.37 Aligned_cols=36 Identities=25% Similarity=0.470 Sum_probs=28.1
Q ss_pred EEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 327 VVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 327 v~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
+|+|+|.+|+.+++.|+... .....-+|.++|.++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~-------~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA-------DPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc-------CCCCCCEEEEEcCCCc
Confidence 48999999999999999864 1122358999999755
No 289
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=64.99 E-value=6.2 Score=40.10 Aligned_cols=32 Identities=34% Similarity=0.564 Sum_probs=26.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+||.|+|+|..|.+||..++.. |. +++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-----GY-------DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 6899999999999999998754 43 68888864
No 290
>PRK09126 hypothetical protein; Provisional
Probab=64.92 E-value=5.6 Score=41.29 Aligned_cols=22 Identities=45% Similarity=0.659 Sum_probs=19.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
..|+|+|||.||+..|..|.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~ 25 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGS 25 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhC
Confidence 6799999999999999988763
No 291
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=64.79 E-value=5.3 Score=41.51 Aligned_cols=31 Identities=26% Similarity=0.506 Sum_probs=25.0
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
|+|+|||.||+..|..+.+ .|+ ++.++|++.
T Consensus 2 viIiGaG~AGl~~A~~la~-----~g~-------~v~liE~~~ 32 (388)
T TIGR01790 2 LAVIGGGPAGLAIALELAR-----PGL-------RVQLIEPHP 32 (388)
T ss_pred EEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccCC
Confidence 8999999999999977653 354 688899764
No 292
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=64.75 E-value=6.3 Score=32.01 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=23.5
Q ss_pred EeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 328 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 328 ~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
|+|||.+|+..|..|.+. | .+|.++|++--
T Consensus 1 IiGaG~sGl~aA~~L~~~-----g-------~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-----G-------YRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-----T-------SEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC-----C-------CcEEEEecCcc
Confidence 789999999999998763 3 48999988643
No 293
>PLN02268 probable polyamine oxidase
Probab=64.73 E-value=2.6 Score=44.75 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=19.2
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (533)
+|+|+|||-||+..|..|.+.
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~ 22 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA 22 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC
Confidence 799999999999999999764
No 294
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=64.64 E-value=6.8 Score=38.43 Aligned_cols=34 Identities=15% Similarity=0.374 Sum_probs=26.9
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
|++.++||+|+|..|.-.++.|+++ | .+|++++.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~-----g-------a~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKY-----G-------AHIVVISP 41 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEcC
Confidence 3449999999999999998888774 2 27888864
No 295
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=64.48 E-value=1.2e+02 Score=32.78 Aligned_cols=186 Identities=17% Similarity=0.206 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHHHHHHhCC----------------C-CCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCe
Q 009519 298 GTAGVALAGLLGTVRAQGL----------------S-LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNK 360 (533)
Q Consensus 298 GTaaV~LAgli~Alr~~g~----------------~-l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~ 360 (533)
-||-.+++-+|.++|-... + -.++..+||.|+|.|+.|..||+.|..+. ..
T Consensus 120 ~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg------------~~ 187 (336)
T KOG0069|consen 120 DVADLAVSLLLALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFG------------CV 187 (336)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhcc------------ce
Confidence 4666777777777774321 1 13444599999999999999999998742 13
Q ss_pred EEEEeccCccccCCCC--CChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcC
Q 009519 361 FFLLDKDGLITKERKN--LDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESD 434 (533)
Q Consensus 361 i~lvD~~GLi~~~r~~--l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~ 434 (533)
|. +..|.. ....+..+++. -++.|...+ .|++|=..- .-++|+++.+..|.
T Consensus 188 i~--------y~~r~~~~~~~~~~~~~~~----------~d~~~~~~~--sD~ivv~~pLt~~T~~liNk~~~~~mk--- 244 (336)
T KOG0069|consen 188 IL--------YHSRTQLPPEEAYEYYAEF----------VDIEELLAN--SDVIVVNCPLTKETRHLINKKFIEKMK--- 244 (336)
T ss_pred ee--------eecccCCchhhHHHhcccc----------cCHHHHHhh--CCEEEEecCCCHHHHHHhhHHHHHhcC---
Confidence 33 333321 22333444432 357777776 898874321 12789999999993
Q ss_pred CCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecC-CCCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHH
Q 009519 435 SVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASG-SPFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDG 513 (533)
Q Consensus 435 ~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtG-SPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~ 513 (533)
+.-+|.-.+.=.--=|-.--||.+ .|+ |...| -=|.+-. + ....-.-.-|+-+-|=||-..+.++ .+
T Consensus 245 -~g~vlVN~aRG~iide~~l~eaL~--sG~-i~~aGlDVf~~EP-~--~~~~l~~~dnvv~~PHigs~t~~t~-----~~ 312 (336)
T KOG0069|consen 245 -DGAVLVNTARGAIIDEEALVEALK--SGK-IAGAGLDVFEPEP-P--VDHPLLTLDNVVILPHIGSATLETR-----EK 312 (336)
T ss_pred -CCeEEEeccccccccHHHHHHHHh--cCC-cccccccccCCCC-C--CCcchhcccceeEecccccCcHHHH-----HH
Confidence 566777666644311333334433 454 55655 1111111 0 1111223567888998887777665 44
Q ss_pred HHHHHHHHHhcccCCCC
Q 009519 514 MLQQAAEWYVCDNCNEP 530 (533)
Q Consensus 514 M~~aAA~alA~~v~~~~ 530 (533)
|-..++.-+=+..+.++
T Consensus 313 m~~~v~~n~~~~~~g~~ 329 (336)
T KOG0069|consen 313 MAEIVLNNLLAFFSGKP 329 (336)
T ss_pred HHHHHHHHHHHHHccCC
Confidence 55555544444444443
No 296
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=64.42 E-value=5 Score=43.00 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=24.3
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..||||+|+|.||+..|+.|.. . .-+|.++|.+
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~-----~-------~~~ItlI~~~ 42 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDP-----K-------KYNITVISPR 42 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCc-----C-------CCeEEEEcCC
Confidence 4799999999999998876621 1 1258888764
No 297
>PRK08163 salicylate hydroxylase; Provisional
Probab=64.33 E-value=5.9 Score=41.19 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=19.0
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (533)
.+|+|+|||.||+..|-.|..
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~ 25 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALAR 25 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHh
Confidence 689999999999999988765
No 298
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=64.31 E-value=18 Score=36.12 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=18.2
Q ss_pred eEEEeCchhHHHHHHHHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~ 344 (533)
||.|+|+|..|..+++-|.+
T Consensus 2 ~IgiIG~G~mG~aia~~L~~ 21 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLT 21 (258)
T ss_pred eEEEECcCHHHHHHHHHHHh
Confidence 69999999999999998865
No 299
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=64.01 E-value=4.2 Score=41.90 Aligned_cols=32 Identities=31% Similarity=0.700 Sum_probs=27.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..|-|+|||-.|.|||+....+ |+ ++|++|++
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~s-----g~-------~V~l~d~~ 43 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATS-----GL-------NVWLVDAN 43 (298)
T ss_pred cceEEEcccccchhHHHHHHhc-----CC-------ceEEecCC
Confidence 4688999999999999987764 55 79999984
No 300
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=63.96 E-value=6.1 Score=38.53 Aligned_cols=33 Identities=36% Similarity=0.583 Sum_probs=25.6
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
.|+|+|||.||+..|..|.+ .|+ ++.++|++-.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~-----~g~-------~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLAD-----KGL-------RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHH-----CCC-------eEEEEeccCC
Confidence 38999999999999987754 454 5778887643
No 301
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=63.85 E-value=6.5 Score=42.68 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=26.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+|+|+|+|.||+..|..|.+. |. ++.++|+.
T Consensus 134 ~~V~IIG~G~aGl~aA~~l~~~-----G~-------~V~vie~~ 165 (449)
T TIGR01316 134 KKVAVIGAGPAGLACASELAKA-----GH-------SVTVFEAL 165 (449)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 8999999999999999988653 43 57788864
No 302
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=63.66 E-value=6.6 Score=40.37 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=27.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
..|+|+|||.+|+.+|-.|.+. | .++.++|+...
T Consensus 4 ~dv~IIGgGi~G~s~A~~L~~~-----g-------~~V~lie~~~~ 37 (376)
T PRK11259 4 YDVIVIGLGSMGSAAGYYLARR-----G-------LRVLGLDRFMP 37 (376)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEecccC
Confidence 5799999999999999888763 4 37889997643
No 303
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=63.65 E-value=6.5 Score=42.36 Aligned_cols=34 Identities=26% Similarity=0.432 Sum_probs=26.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||||+|+|.||+..|+.|.+. +- .-+|.++|+.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~-----~~-----~~~I~li~~~ 35 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRL-----DK-----ESDIIIFEKD 35 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhh-----CC-----CCCEEEEECC
Confidence 4899999999999999999652 11 1368888875
No 304
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=63.44 E-value=6.7 Score=43.32 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=29.2
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||+++|||+.|+-+++.|+.+++ -.|- ..+|.++|.+
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv-~~g~-----~G~I~IvD~D 37 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGV-GTGE-----SGEITVTDMD 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCC-CcCC-----CCeEEEECCC
Confidence 68999999999999999988755 1111 1589999986
No 305
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=63.27 E-value=6.7 Score=43.80 Aligned_cols=32 Identities=22% Similarity=0.490 Sum_probs=25.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+|+|+|||.||+..|..+... |. +++++|+.
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~-----G~-------~V~v~e~~ 169 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRM-----GH-------AVTIFEAG 169 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 7999999999999999887653 43 57888853
No 306
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=62.92 E-value=7.3 Score=40.93 Aligned_cols=34 Identities=24% Similarity=0.485 Sum_probs=27.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..|+|+|||.+|+.+|..|.+. ..| .+|.++|+.
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~---~~g-------~~V~llE~~ 36 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQER---YPG-------ARIAVLEKE 36 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHh---CCC-------CeEEEEeCC
Confidence 4699999999999999988764 113 378899986
No 307
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=62.69 E-value=6.3 Score=40.81 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=25.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..|+|+|||.||+..|-.|.+ .|+ ++.++|++
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~v~E~~ 37 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQ-----SGL-------RVALLAPR 37 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecC
Confidence 479999999999999988764 354 57777765
No 308
>PRK11445 putative oxidoreductase; Provisional
Probab=62.53 E-value=7 Score=40.63 Aligned_cols=30 Identities=23% Similarity=0.522 Sum_probs=23.7
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.|+|+|||.||...|..|.+. . ++.++|++
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~------------~V~liE~~ 32 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-M------------KVIAIDKK 32 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-C------------CEEEEECC
Confidence 589999999999999887653 2 56677765
No 309
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=62.41 E-value=9.4 Score=38.87 Aligned_cols=116 Identities=20% Similarity=0.288 Sum_probs=73.0
Q ss_pred CCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHH--hCCCc-eeeeecCCCchHHH-HHHH
Q 009519 209 GINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHA--RWPKA-IVQFEDFQMKWAFE-TLER 284 (533)
Q Consensus 209 GI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~--~~P~~-~I~~EDf~~~~af~-iL~r 284 (533)
||+ .+|+.+.+| ++..+++ .+-..|+|.+.+++ ..|+. ....+|| .++|+ ++++
T Consensus 20 ~I~---vvPl~I~~~--~~~y~D~---------------~~i~~~~~y~~~~~~~~~p~TS~ps~~~~--~~~~~~l~~~ 77 (275)
T TIGR00762 20 GIT---VVPLTVIID--GKTYRDG---------------VDITPEEFYEKLKESKELPKTSQPSPGEF--LELYEKLLEE 77 (275)
T ss_pred CCE---EEEEEEEEC--CEEeecC---------------CCCCHHHHHHHHHhcCCCCCcCCCCHHHH--HHHHHHHHhC
Confidence 777 999999885 3333332 11235677776654 24654 6666666 34443 3444
Q ss_pred HhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHH--HHHHcCCChhhh
Q 009519 285 YRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA--AARMAGNNDAFA 357 (533)
Q Consensus 285 yr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~--~~~~~Gls~~eA 357 (533)
| +.+-+++ =+-.|+|-++..+...+.+.+ .+|-++=..+++.|.+.++..+ |. ++|.+.+|.
T Consensus 78 ~-~~vi~i~------iSs~lSgty~~a~~aa~~~~~---~~i~ViDS~~~s~~~g~~v~~a~~~~-~~G~s~~eI 141 (275)
T TIGR00762 78 G-DEVLSIH------LSSGLSGTYQSARQAAEMVDE---AKVTVIDSKSASMGLGLLVLEAAKLA-EEGKSLEEI 141 (275)
T ss_pred C-CeEEEEE------cCCchhHHHHHHHHHHhhCCC---CCEEEECChHHHHHHHHHHHHHHHHH-HcCCCHHHH
Confidence 4 3333332 233466667777766666666 7899999999999988888765 34 689998875
No 310
>PLN02852 ferredoxin-NADP+ reductase
Probab=62.30 E-value=10 Score=42.45 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=27.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||+|+|||.||+..|..|... ..|. +|.++|+.
T Consensus 27 ~~VaIVGaGPAGl~AA~~L~~~---~~g~-------~Vtv~E~~ 60 (491)
T PLN02852 27 LHVCVVGSGPAGFYTADKLLKA---HDGA-------RVDIIERL 60 (491)
T ss_pred CcEEEECccHHHHHHHHHHHhh---CCCC-------eEEEEecC
Confidence 8999999999999999998753 1242 78888876
No 311
>PRK06753 hypothetical protein; Provisional
Probab=62.27 E-value=6.7 Score=40.43 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=18.6
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (533)
+|+|+|||.||+..|..|.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~ 22 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ 22 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC
Confidence 799999999999999888653
No 312
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=62.19 E-value=22 Score=36.69 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=25.6
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+-||+|+|||+.|.-+|-.|.++ |. .+.++++.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~-----G~-------~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-----GL-------PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC-----CC-------CeEEEEec
Confidence 35899999999999999888653 42 57777763
No 313
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=62.15 E-value=23 Score=35.86 Aligned_cols=32 Identities=25% Similarity=0.432 Sum_probs=25.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|.|..|..+|..+... |. +++++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~-----g~-------~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA-----GY-------SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC-----CC-------eEEEEcCC
Confidence 4899999999999999998753 42 57777764
No 314
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=62.05 E-value=6.8 Score=42.38 Aligned_cols=32 Identities=28% Similarity=0.527 Sum_probs=26.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+|+|+|+|.||+..|..|.. .|. ++.++|+.
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~-----~g~-------~V~lie~~ 172 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLAR-----KGY-------DVTIFEAR 172 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHh-----CCC-------eEEEEccC
Confidence 799999999999999988754 343 68888875
No 315
>PRK07877 hypothetical protein; Provisional
Probab=61.80 E-value=12 Score=43.79 Aligned_cols=40 Identities=25% Similarity=0.248 Sum_probs=30.9
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
.+|++ .||+|+|+| .|..+|..|+.+++ . .+|.++|-+=+
T Consensus 103 ~~L~~---~~V~IvG~G-lGs~~a~~LaraGv----v------G~l~lvD~D~v 142 (722)
T PRK07877 103 ERLGR---LRIGVVGLS-VGHAIAHTLAAEGL----C------GELRLADFDTL 142 (722)
T ss_pred HHHhc---CCEEEEEec-HHHHHHHHHHHccC----C------CeEEEEcCCEE
Confidence 34555 999999998 89999988887642 1 58999998743
No 316
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=61.55 E-value=7.4 Score=41.44 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=27.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
.||||+|+|.||+..|..|.+. |-. -+|.++|++.-
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~-----~~~-----~~Vtli~~~~~ 36 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRL-----NKE-----LEITVYEKTDI 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHH-----CCC-----CcEEEEECCCc
Confidence 3899999999999999988653 211 26888887653
No 317
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=61.33 E-value=28 Score=37.84 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=24.5
Q ss_pred HHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHH
Q 009519 309 GTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 309 ~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.++.-....|.. +|++|+|-..-.+++++.|.+.
T Consensus 292 ~~~~~~~~~l~g---krv~i~g~~~~~~~la~~L~el 325 (435)
T cd01974 292 DAMTDSHQYLHG---KKFALYGDPDFLIGLTSFLLEL 325 (435)
T ss_pred HHHHHHHHhcCC---CEEEEEcChHHHHHHHHHHHHC
Confidence 333333445556 8999999888899999888754
No 318
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=61.30 E-value=19 Score=36.60 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=25.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||.|+|+|..|..+|..|.+. |. +++++|++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-----g~-------~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-----GH-------TVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-----CC-------EEEEEECC
Confidence 799999999999999998753 32 57888864
No 319
>PRK12831 putative oxidoreductase; Provisional
Probab=61.29 E-value=7.7 Score=42.44 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=26.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+|+|+|||.||+..|..+.+. |. ++.++|+.
T Consensus 141 ~~V~IIG~GpAGl~aA~~l~~~-----G~-------~V~v~e~~ 172 (464)
T PRK12831 141 KKVAVIGSGPAGLTCAGDLAKM-----GY-------DVTIFEAL 172 (464)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEecC
Confidence 7999999999999999988764 43 57788763
No 320
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.28 E-value=8.2 Score=41.33 Aligned_cols=25 Identities=36% Similarity=0.616 Sum_probs=21.3
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHH
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQAA 346 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~ 346 (533)
+..+++|+|+|.+|.++|+.|...+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G 28 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLG 28 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC
Confidence 3489999999999999999988653
No 321
>PRK06834 hypothetical protein; Provisional
Probab=61.26 E-value=7.7 Score=42.74 Aligned_cols=35 Identities=20% Similarity=0.416 Sum_probs=27.8
Q ss_pred CCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
++..|+|+|||.+|+..|-.|... |+ ++.++|+.-
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~-----G~-------~v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA-----GV-------DVAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecCC
Confidence 458899999999999999988654 54 577777653
No 322
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=61.20 E-value=7.5 Score=40.74 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=25.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~-----~G~-------~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK-----QGR-------SVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEcCC
Confidence 589999999999999977754 465 56777754
No 323
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=61.16 E-value=21 Score=40.05 Aligned_cols=104 Identities=15% Similarity=0.155 Sum_probs=63.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.+|-|+|-|..|.++|.-|++. |. ++.+.|+. .++ ..+....++..... ......|+.|+
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~-----G~-------~V~V~NRt----~~k--~~~l~~~~~~~Ga~--~~~~a~s~~e~ 66 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEK-----GF-------PISVYNRT----TSK--VDETVERAKKEGNL--PLYGFKDPEDF 66 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhC-----CC-------eEEEECCC----HHH--HHHHHHhhhhcCCc--ccccCCCHHHH
Confidence 4699999999999999999764 54 57777762 211 12221111111100 00124678999
Q ss_pred hccc-CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 404 VRKV-KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 404 V~~v-kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
++.+ +|+++| ++-..+.-.++|+..+.+...+.-||.=+||=.+
T Consensus 67 v~~l~~~dvIi-~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~ 111 (493)
T PLN02350 67 VLSIQKPRSVI-ILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWY 111 (493)
T ss_pred HhcCCCCCEEE-EECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 8754 588877 4434566667777655443456779999998654
No 324
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=61.03 E-value=8.4 Score=43.26 Aligned_cols=22 Identities=32% Similarity=0.672 Sum_probs=17.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.||+|+|||.+|+..|+.|++.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~ 23 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEE 23 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHT
T ss_pred CEEEEECccHHHHHHHHHHHHC
Confidence 6999999999999999998763
No 325
>PRK08013 oxidoreductase; Provisional
Probab=61.00 E-value=7.5 Score=41.03 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=25.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-.|+|+|||.+|+..|-.|.+ .|+ ++.++|++
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~-----~G~-------~v~viE~~ 35 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQG-----SGL-------RVAVLEQR 35 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhh-----CCC-------EEEEEeCC
Confidence 579999999999999977754 465 56677764
No 326
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=60.82 E-value=8.3 Score=40.12 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=26.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
++|+|+|+|.||+..|..+.+. | .++.++|+.
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 50 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACL-----G-------YEVHVYDKL 50 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-----C-------CcEEEEeCC
Confidence 7999999999999999888643 4 368888875
No 327
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=60.77 E-value=7.8 Score=39.89 Aligned_cols=33 Identities=33% Similarity=0.443 Sum_probs=26.5
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
.|+|+|||.+|+.+|-.|.+. |. ++.++|+...
T Consensus 2 dvvIIGaGi~G~s~A~~La~~-----g~-------~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKH-----GK-------KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeccCC
Confidence 489999999999999888653 43 6888888654
No 328
>PRK07045 putative monooxygenase; Reviewed
Probab=60.71 E-value=7.7 Score=40.48 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=19.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
-+|+|+|||.||+..|-.|.+.
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~ 27 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGAR 27 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhc
Confidence 5899999999999999887654
No 329
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=60.55 E-value=24 Score=37.12 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=21.1
Q ss_pred CCceEEEeCchhHHHHHHHHHHHH
Q 009519 322 ADQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 322 ~~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
++.||.|+|+|..|-++|..|.+.
T Consensus 2 ~~kkIgiIG~G~mG~AiA~~L~~s 25 (314)
T TIGR00465 2 KGKTVAIIGYGSQGHAQALNLRDS 25 (314)
T ss_pred CcCEEEEEeEcHHHHHHHHHHHHC
Confidence 448999999999999999998764
No 330
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=60.53 E-value=4.9 Score=40.72 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=28.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi 370 (533)
-.|+|+|||.||+..|..+.+ .|+ ++.+++++.-+
T Consensus 22 ~DVvIVGgGpAGL~aA~~la~-----~G~-------~V~vlEk~~~~ 56 (254)
T TIGR00292 22 SDVIIVGAGPSGLTAAYYLAK-----NGL-------KVCVLERSLAF 56 (254)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEecCCCC
Confidence 789999999999999987754 353 68888887543
No 331
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=60.23 E-value=7.6 Score=47.08 Aligned_cols=33 Identities=30% Similarity=0.625 Sum_probs=27.1
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..||+|+|||.||+..|..|... |. ++.++|++
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~-----G~-------~VtV~Ek~ 571 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARA-----GH-------PVTVFERE 571 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecc
Confidence 38999999999999999998653 43 57788865
No 332
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=60.07 E-value=8 Score=44.25 Aligned_cols=33 Identities=27% Similarity=0.585 Sum_probs=26.5
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~-----G~-------~Vtv~e~~ 225 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRK-----GH-------DVTIFDAN 225 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 37999999999999999988753 43 57777764
No 333
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=60.03 E-value=6.6 Score=41.03 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=26.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
..|+|+|||.+|+..|-.|.+ .|+ ++.++|++-
T Consensus 7 ~dV~IvGaG~aGl~~A~~La~-----~G~-------~v~liE~~~ 39 (392)
T PRK08773 7 RDAVIVGGGVVGAACALALAD-----AGL-------SVALVEGRE 39 (392)
T ss_pred CCEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEeCCC
Confidence 579999999999999988754 454 578888753
No 334
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=59.55 E-value=7.9 Score=46.49 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=30.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc----Ccccc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD----GLITK 372 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~----GLi~~ 372 (533)
.||+|+|||.||+..|..|... |. ++.++|+. |++.-
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~-----G~-------~VtVfE~~~~~GG~l~y 347 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVE-----GF-------PVTVFEAFHDLGGVLRY 347 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeeCCCCCceEEc
Confidence 8999999999999999998864 43 57888875 66543
No 335
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=59.51 E-value=8.6 Score=41.17 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=27.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
-.|||+|||+||+..|..+.+. | .++.++|++.
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~-----g-------~~V~liE~~~ 36 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASA-----G-------KKVALVEESK 36 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEecCC
Confidence 4699999999999999888663 4 3799999864
No 336
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=59.30 E-value=7.4 Score=40.18 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=18.3
Q ss_pred EEEeCchhHHHHHHHHHHHH
Q 009519 326 IVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~ 345 (533)
|+|+|||.||+..|..|.+.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~ 21 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRL 21 (382)
T ss_pred EEEECccHHHHHHHHHHhcC
Confidence 89999999999999998865
No 337
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=59.25 E-value=9 Score=38.99 Aligned_cols=32 Identities=47% Similarity=0.776 Sum_probs=26.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+|+|..|.+||..++.+ | .+++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-----G-------~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-----G-------MDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----C-------CeEEEEeCC
Confidence 5799999999999999998764 4 268888853
No 338
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=59.18 E-value=6.5 Score=40.64 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=26.7
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
+|||+|+|.||+..|+.+..... ...+|.++|++.-
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~---------~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPL---------PGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCC---------CCCEEEEECCCCC
Confidence 59999999999999888754211 1247999987654
No 339
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=59.16 E-value=23 Score=36.01 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=22.0
Q ss_pred EeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 328 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 328 ~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
|+|.|..|..+|..|+.. |. +++++|+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~-----G~-------~V~v~dr~ 28 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-----GH-------PVRVFDLF 28 (288)
T ss_pred CCcccHhHHHHHHHHHhC-----CC-------eEEEEeCC
Confidence 689999999999998753 42 57778764
No 340
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=59.15 E-value=8 Score=42.32 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=18.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
-.|+|+|||.||...|..|...
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~ 61 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKG 61 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhC
Confidence 5799999999999999887653
No 341
>PRK10262 thioredoxin reductase; Provisional
Probab=58.97 E-value=8.3 Score=39.30 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.+|+|+|||.||+..|..+.+.
T Consensus 7 ~~vvIIGgGpaGl~aA~~l~~~ 28 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARA 28 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHC
Confidence 7899999999999999888753
No 342
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=58.65 E-value=20 Score=37.32 Aligned_cols=124 Identities=17% Similarity=0.251 Sum_probs=74.7
Q ss_pred EeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHHHhcc
Q 009519 328 VVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVVRK 406 (533)
Q Consensus 328 ~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~ 406 (533)
|+|||..|..+|.+|+. .|+- ..|.|+|.+-=...+. -+|.+....+.++. .. ..+-.+.+++
T Consensus 1 iIGaG~VG~~~a~~l~~-----~~l~-----~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~-~i-----~~~~~~~~~d 64 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLN-----QGIA-----DEIVLIDINKDKAEGEAMDLQHAASFLPTPK-KI-----RSGDYSDCKD 64 (299)
T ss_pred CCCcCHHHHHHHHHHHh-----cCCC-----CEEEEEeCCCChhhHHHHHHHHhhcccCCCe-EE-----ecCCHHHHCC
Confidence 58999999999998864 3443 4799999842111111 13333322221111 11 1123566877
Q ss_pred cCCcEEEEeccC---CCC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCC--cEEEecC
Q 009519 407 VKPHVLLGLSGV---GGV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGE--NIVFASG 470 (533)
Q Consensus 407 vkptvLIG~S~~---~g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~G--rai~AtG 470 (533)
.|++|=+.+. +|- +=+++++.+.+ +++.-+|+-.|||.. +...-+++++.= +-+|++|
T Consensus 65 --aDivVitag~~rk~g~~R~dll~~N~~i~~~~~~~i~~-~~p~~~vivvsNP~d---~~t~~~~~~sg~p~~~viG~g 138 (299)
T TIGR01771 65 --ADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVK-SGFDGIFLVATNPVD---ILTYVAWKLSGFPKNRVIGSG 138 (299)
T ss_pred --CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEeCCHHH---HHHHHHHHHhCCCHHHEEecc
Confidence 8998855444 331 12456777754 889999999999985 666667766521 3478887
Q ss_pred CCC
Q 009519 471 SPF 473 (533)
Q Consensus 471 SPf 473 (533)
.-.
T Consensus 139 t~L 141 (299)
T TIGR01771 139 TVL 141 (299)
T ss_pred chH
Confidence 544
No 343
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=58.26 E-value=28 Score=34.22 Aligned_cols=59 Identities=19% Similarity=0.423 Sum_probs=41.0
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||+|.|| |-.|..+++.|++. | .+++.+++. ..++. +..++.++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~-----g-------~~v~~~~r~------~~d~~-----------------~~~~~~~~ 45 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE-----G-------RVVVALTSS------QLDLT-----------------DPEALERL 45 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc-----C-------CEEEEeCCc------ccCCC-----------------CHHHHHHH
Confidence 6899997 98888888887653 4 267777763 11111 12458888
Q ss_pred hcccCCcEEEEeccC
Q 009519 404 VRKVKPHVLLGLSGV 418 (533)
Q Consensus 404 V~~vkptvLIG~S~~ 418 (533)
++..+||++|=+.+.
T Consensus 46 ~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 46 LRAIRPDAVVNTAAY 60 (287)
T ss_pred HHhCCCCEEEECCcc
Confidence 888899999977654
No 344
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=58.21 E-value=8 Score=39.63 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=24.3
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
|+|+|||.||+..|..|.+. |+ ++.++|+.-
T Consensus 2 ViIvGaG~aGl~~A~~L~~~-----G~-------~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARS-----GL-------KIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhcC-----CC-------EEEEEeCCC
Confidence 89999999999999877653 54 566777763
No 345
>PLN02676 polyamine oxidase
Probab=58.15 E-value=19 Score=39.73 Aligned_cols=22 Identities=32% Similarity=0.623 Sum_probs=19.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.+|+|+|||.+|++.|..|.+.
T Consensus 27 ~~v~IIGaG~sGL~aa~~L~~~ 48 (487)
T PLN02676 27 PSVIIVGAGMSGISAAKTLSEA 48 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHc
Confidence 6899999999999999998764
No 346
>PRK07588 hypothetical protein; Provisional
Probab=58.05 E-value=8.7 Score=40.11 Aligned_cols=21 Identities=29% Similarity=0.343 Sum_probs=18.5
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (533)
+|+|+|||.||+..|-.|.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~ 22 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY 22 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC
Confidence 799999999999999888653
No 347
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=57.99 E-value=9.3 Score=40.14 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.+|+|+|||.||+..|-.|.+.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~ 24 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLA 24 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhc
Confidence 6899999999999999887653
No 348
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=57.85 E-value=7.7 Score=40.71 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=25.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-.|+|+|||.+|+..|-.|.+ .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG-----SGL-------EVLLLDGG 34 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 469999999999999988754 454 57777765
No 349
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=57.80 E-value=8.5 Score=41.47 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=24.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-.|+|+|||.||...|-.|.+ .|+ ++.++|+.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~-----~G~-------~V~llEr~ 37 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAR-----EGA-------QVLVIERG 37 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEEcC
Confidence 469999999999999988764 465 46666654
No 350
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=57.74 E-value=28 Score=40.13 Aligned_cols=94 Identities=22% Similarity=0.263 Sum_probs=51.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||.|+|+|..|..+|..+... |.. .+|+.+|++ .+ .+.. ++...... ....++.++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~-----G~~-----~~V~~~d~~----~~--~~~~-----a~~~g~~~--~~~~~~~~~ 60 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER-----GLA-----REVVAVDRR----AK--SLEL-----AVSLGVID--RGEEDLAEA 60 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-----CCC-----CEEEEEECC----hh--HHHH-----HHHCCCCC--cccCCHHHH
Confidence 6899999999999999988753 431 368888873 11 1111 11100000 012346666
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
++. +|++| ++. +-...+++++.|+....+.-||.-++
T Consensus 61 ~~~--aDvVi-lav-p~~~~~~vl~~l~~~~~~~~ii~d~~ 97 (735)
T PRK14806 61 VSG--ADVIV-LAV-PVLAMEKVLADLKPLLSEHAIVTDVG 97 (735)
T ss_pred hcC--CCEEE-ECC-CHHHHHHHHHHHHHhcCCCcEEEEcC
Confidence 665 66665 443 23355677777754233444554444
No 351
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=57.72 E-value=19 Score=37.46 Aligned_cols=106 Identities=14% Similarity=0.184 Sum_probs=64.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccc-cCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD-PGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~-~~~~~~~~~~~~L~e 402 (533)
.++.|+|+|.-|..-++.++.. ..+ ++|.+.|+. .+ +...+...+.+. ..+. ....+++|
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v----~~i------~~v~v~~r~----~~--~a~~f~~~~~~~~~~~v---~~~~~~~e 178 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASV----YNP------KRIRVYSRN----FD--HARAFAERFSKEFGVDI---RPVDNAEA 178 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhc----CCC------CEEEEECCC----HH--HHHHHHHHHHHhcCCcE---EEeCCHHH
Confidence 7999999999988877776663 123 578877762 21 222222333221 1011 12468999
Q ss_pred HhcccCCcEEEEeccC-CCCCCHHHHHHhhhcCCCCCeEEec-CCCCCcccCCHHHH
Q 009519 403 VVRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAM-SNPTMNAECTAADA 457 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~-~g~Fteevv~~Ma~~~~erPIIFaL-SNPt~~aE~tpe~A 457 (533)
+++. .||++-+.+. ...|..++++. .--|-++ |+--.+.|+.++-.
T Consensus 179 av~~--aDIV~taT~s~~P~~~~~~l~p-------g~hV~aiGs~~p~~~El~~~~l 226 (301)
T PRK06407 179 ALRD--ADTITSITNSDTPIFNRKYLGD-------EYHVNLAGSNYPNRREAEHSVL 226 (301)
T ss_pred HHhc--CCEEEEecCCCCcEecHHHcCC-------CceEEecCCCCCCcccCCHHHH
Confidence 9988 9999976543 36788888873 2234444 33234569998743
No 352
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=57.66 E-value=8.8 Score=46.54 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=26.8
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..+|+|+|||.||+..|..|... |. ++.++|+.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~-----G~-------~VTV~Ek~ 569 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARA-----GH-------PVTVFEKK 569 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecc
Confidence 37999999999999999988653 43 57788864
No 353
>PRK08244 hypothetical protein; Provisional
Probab=57.64 E-value=8.8 Score=41.75 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=24.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..|+|+|||.+|+..|-.|.+. |+ ++.++|+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~-----G~-------~v~viEr~ 34 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALA-----GV-------KTCVIERL 34 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-----CC-------cEEEEecC
Confidence 5799999999999999888654 54 46666654
No 354
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=57.54 E-value=9.7 Score=43.39 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=27.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
..|+|+|||.+|+.+|..|.+. |. +|.++|++.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~-----G~-------~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARR-----GW-------QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 4799999999999999998653 53 699999874
No 355
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=57.47 E-value=9.5 Score=39.97 Aligned_cols=31 Identities=29% Similarity=0.561 Sum_probs=25.7
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|+|+|||-+|+.+|..|.+. | .+|.++|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-----g-------~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-----G-------HEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 699999999999999888653 4 368888885
No 356
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=57.40 E-value=9.2 Score=40.30 Aligned_cols=32 Identities=13% Similarity=0.386 Sum_probs=25.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+|+|+|||.+|+..|-.|.. .|+ ++.++|+.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~-----~G~-------~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKE-----SDL-------RIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHh-----CCC-------EEEEEcCC
Confidence 579999999999999977654 465 56777764
No 357
>PLN02527 aspartate carbamoyltransferase
Probab=57.25 E-value=1.9e+02 Score=30.43 Aligned_cols=133 Identities=18% Similarity=0.208 Sum_probs=74.5
Q ss_pred HhCCCceeeeecCCCchHHHHHHHHhccCceec--cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHH
Q 009519 261 ARWPKAIVQFEDFQMKWAFETLERYRKRFCMFN--DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGV 338 (533)
Q Consensus 261 ~~~P~~~I~~EDf~~~~af~iL~ryr~~~~~Fn--DDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~Gi 338 (533)
.+|.++ |-+-.+......+ +.+| ..+||.| |+...=-+=+||=++.-.+..| +++. .||+++|.+.=+ -+
T Consensus 94 s~y~D~-iviR~~~~~~~~~-~a~~-~~vPVINa~~g~~~HPtQ~LaDl~Ti~e~~g-~l~g---~kva~vGD~~~~-rv 165 (306)
T PLN02527 94 EGYSDI-IVLRHFESGAARR-AAAT-AEIPVINAGDGPGQHPTQALLDVYTIQREIG-RLDG---IKVGLVGDLANG-RT 165 (306)
T ss_pred HHhCcE-EEEECCChhHHHH-HHHh-CCCCEEECCCCCCCChHHHHHHHHHHHHHhC-CcCC---CEEEEECCCCCC-hh
Confidence 445443 2233344443333 3344 3589999 4343334455666666666555 4777 999999987522 34
Q ss_pred HHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccC
Q 009519 339 LKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV 418 (533)
Q Consensus 339 A~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~ 418 (533)
++-++.++....|+ +|.++--+|+ .+++.-..+++.... ......++.|++++ +||+.-.+.+
T Consensus 166 ~~Sl~~~~~~~~g~-------~v~~~~P~~~------~~~~~~~~~~~~~g~--~~~~~~d~~~a~~~--aDvvyt~~~q 228 (306)
T PLN02527 166 VRSLAYLLAKYEDV-------KIYFVAPDVV------KMKDDIKDYLTSKGV--EWEESSDLMEVASK--CDVLYQTRIQ 228 (306)
T ss_pred HHHHHHHHHhcCCC-------EEEEECCCcc------CCCHHHHHHHHHcCC--EEEEEcCHHHHhCC--CCEEEECCcc
Confidence 55555554411254 6777777666 122222333332110 01123679999999 9999987654
No 358
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=56.98 E-value=11 Score=43.85 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=27.4
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..||+|+|||.||+..|..|... |. ++.++|+.
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~-----G~-------~V~v~e~~ 463 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKR-----GY-------DVTVFEAL 463 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 38999999999999999988763 43 68888874
No 359
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=56.95 E-value=9.7 Score=41.07 Aligned_cols=31 Identities=23% Similarity=0.534 Sum_probs=25.0
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+++|+|||.||+.+|..|.+ .| .++.++|++
T Consensus 3 DvvIIGaG~aGlsaA~~La~-----~G-------~~V~viEk~ 33 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQ-----LN-------KRVLVVEKR 33 (377)
T ss_pred cEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEecC
Confidence 68999999999999988864 24 368888874
No 360
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=56.95 E-value=9 Score=39.80 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=26.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
..|+|+|||.+|+..|-.|.+ .|+ ++.++|++-
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~-----~G~-------~v~liE~~~ 40 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALAR-----AGA-------SVALVAPEP 40 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhc-----CCC-------eEEEEeCCC
Confidence 579999999999999977654 454 577888763
No 361
>PRK08219 short chain dehydrogenase; Provisional
Probab=56.92 E-value=32 Score=32.26 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=39.2
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCc-CC-ccCCCCH
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDF-MG-LREGASL 400 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~-~~-~~~~~~L 400 (533)
.+++|.|| |..|..+++.|++. .++++++++. +.+......+.. .++ .. ..+..++
T Consensus 4 ~~vlVtG~~g~iG~~l~~~l~~~-------------~~V~~~~r~~------~~~~~~~~~~~~--~~~~~~D~~~~~~~ 62 (227)
T PRK08219 4 PTALITGASRGIGAAIARELAPT-------------HTLLLGGRPA------ERLDELAAELPG--ATPFPVDLTDPEAI 62 (227)
T ss_pred CEEEEecCCcHHHHHHHHHHHhh-------------CCEEEEeCCH------HHHHHHHHHhcc--ceEEecCCCCHHHH
Confidence 58999997 55666666655432 2688887741 111111111100 000 00 1123457
Q ss_pred HHHhccc-CCcEEEEeccCC
Q 009519 401 LEVVRKV-KPHVLLGLSGVG 419 (533)
Q Consensus 401 ~e~V~~v-kptvLIG~S~~~ 419 (533)
.++++.+ ++|++|-+.+..
T Consensus 63 ~~~~~~~~~id~vi~~ag~~ 82 (227)
T PRK08219 63 AAAVEQLGRLDVLVHNAGVA 82 (227)
T ss_pred HHHHHhcCCCCEEEECCCcC
Confidence 7777654 589999877653
No 362
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=56.73 E-value=45 Score=29.87 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=44.3
Q ss_pred CCCCcccccchhhhhHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCcee
Q 009519 189 LGVQGIGIPIGKLDVYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIV 268 (533)
Q Consensus 189 lG~~Gm~I~~GKl~LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I 268 (533)
.|..|-...--+..+-......+|+. |.|-+||| |.++ +.+-++|.+-+++|++.++..+|++.|
T Consensus 18 ~g~~G~~~~~~~~~~~~~~~~~~pd~---vvi~~G~N------D~~~------~~~~~~~~~~~~~~i~~i~~~~p~~~i 82 (157)
T cd01833 18 EGHSGYLIDQIAAAAADWVLAAKPDV---VLLHLGTN------DLVL------NRDPDTAPDRLRALIDQMRAANPDVKI 82 (157)
T ss_pred CCCCCccHHHHHHHhhhccccCCCCE---EEEeccCc------cccc------CCCHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 44455555555555544455566643 46778998 4332 257789999999999999999998744
Q ss_pred e
Q 009519 269 Q 269 (533)
Q Consensus 269 ~ 269 (533)
-
T Consensus 83 i 83 (157)
T cd01833 83 I 83 (157)
T ss_pred E
Confidence 3
No 363
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=56.70 E-value=9.2 Score=41.19 Aligned_cols=33 Identities=30% Similarity=0.477 Sum_probs=27.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
-.++|+|||+||+..|..+.+. | .++.++|++.
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~-----G-------~~V~liE~~~ 37 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQL-----G-------LKVAIVEKEK 37 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CcEEEEeccc
Confidence 4699999999999999887764 4 3789999864
No 364
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=56.69 E-value=89 Score=32.53 Aligned_cols=32 Identities=41% Similarity=0.573 Sum_probs=20.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
++|+|.|+|+.|...+.+... .|. ++++.+|+
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~-----~G~------~~Vi~~~~ 224 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVA-----AGA------SQVVAVDL 224 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHH-----cCC------CcEEEEcC
Confidence 699999998777655443332 354 36777764
No 365
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=56.49 E-value=9.4 Score=39.95 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=32.7
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
++|.. -+|+|+|+|.-|.-+|+-|+.+++ ++|.++|.+-
T Consensus 22 ~KL~~---SrVLVVG~GGLGsEVAKnLaLAGV-----------GsItIvDdD~ 60 (287)
T PTZ00245 22 QQLMH---TSVALHGVAGAAAEAAKNLVLAGV-----------RAVAVADEGL 60 (287)
T ss_pred HHHhh---CeEEEECCCchHHHHHHHHHHcCC-----------CeEEEecCCc
Confidence 44556 899999999999999999988765 6899999863
No 366
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=56.48 E-value=9.4 Score=39.31 Aligned_cols=31 Identities=26% Similarity=0.497 Sum_probs=25.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.|+|+|||-+|+.+|-.|.+. |. ++.++|++
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~-----G~-------~V~vle~~ 32 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARR-----GL-------SVTVIERS 32 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 489999999999999888753 43 58888875
No 367
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=56.43 E-value=16 Score=40.67 Aligned_cols=153 Identities=24% Similarity=0.301 Sum_probs=84.8
Q ss_pred eeccCcccccceecccchHHHHHHHhhhccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCccc
Q 009519 116 VLIDNIKDFAPIIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIG 195 (533)
Q Consensus 116 ll~~~~~e~lpivYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~ 195 (533)
+..+|...+=.++..|..-+-..+==..|.+...-| ++.| .-|.. +-|= .||-|-
T Consensus 192 v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~Y---krvG------kawKR------------GYLL---YGPPGT- 246 (457)
T KOG0743|consen 192 VGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFY---KRVG------KAWKR------------GYLL---YGPPGT- 246 (457)
T ss_pred cCCCCCCCccccccChhHHHHHHHHHHHHHhcchHH---HhcC------cchhc------------ccee---eCCCCC-
Confidence 555777666667777766554332222233333333 3333 23421 1122 455553
Q ss_pred ccchhhhhHhhhcCCCCCceecEEe-eccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCC
Q 009519 196 IPIGKLDVYVAAAGINPQRILPVML-DVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQ 274 (533)
Q Consensus 196 I~~GKl~LY~a~aGI~P~~~lPI~L-DvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~ 274 (533)
||+++-.|.|+-=--...-+.| .|+.| +|.=.-....-++..|-+|||.
T Consensus 247 ---GKSS~IaAmAn~L~ydIydLeLt~v~~n---------------------------~dLr~LL~~t~~kSIivIEDID 296 (457)
T KOG0743|consen 247 ---GKSSFIAAMANYLNYDIYDLELTEVKLD---------------------------SDLRHLLLATPNKSILLIEDID 296 (457)
T ss_pred ---CHHHHHHHHHhhcCCceEEeeeccccCc---------------------------HHHHHHHHhCCCCcEEEEeecc
Confidence 7999999999864111333344 44322 3422223333356799999994
Q ss_pred CchHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCc
Q 009519 275 MKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGA 331 (533)
Q Consensus 275 ~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GA 331 (533)
.+|.+=+|-.++-.-|++ .-.-|||+||||++--.-..=.+ .||+||=.
T Consensus 297 --cs~~l~~~~~~~~~~~~~---~~~~VTlSGLLNfiDGlwSscg~---ERIivFTT 345 (457)
T KOG0743|consen 297 --CSFDLRERRKKKKENFEG---DLSRVTLSGLLNFLDGLWSSCGD---ERIIVFTT 345 (457)
T ss_pred --cccccccccccccccccC---CcceeehHHhhhhhccccccCCC---ceEEEEec
Confidence 456555555554444444 56779999999987644333334 68888754
No 368
>PRK08655 prephenate dehydrogenase; Provisional
Probab=56.43 E-value=36 Score=37.30 Aligned_cols=91 Identities=16% Similarity=0.284 Sum_probs=55.0
Q ss_pred eEEEeC-chhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 325 KIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 325 riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
||.|+| .|..|..+|..+... |. +++++|++. +.. ...+.... .....++.++
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~-----G~-------~V~v~~r~~------~~~----~~~a~~~g----v~~~~~~~e~ 55 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEK-----GF-------EVIVTGRDP------KKG----KEVAKELG----VEYANDNIDA 55 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHC-----CC-------EEEEEECCh------HHH----HHHHHHcC----CeeccCHHHH
Confidence 789998 699999999888653 42 688887631 111 11222110 0012357777
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
++. +|++| ++. |-..++++++.++....+..+|+-+++
T Consensus 56 ~~~--aDvVI-lav-p~~~~~~vl~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 56 AKD--ADIVI-ISV-PINVTEDVIKEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred hcc--CCEEE-Eec-CHHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 776 78766 443 334557888877643456678888875
No 369
>PRK08507 prephenate dehydrogenase; Validated
Probab=56.30 E-value=57 Score=32.88 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=25.8
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
||.|+|+|..|..+|..|... |.. .+|+.+|++
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~-----g~~-----~~v~~~d~~ 34 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEK-----GLI-----SKVYGYDHN 34 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhc-----CCC-----CEEEEEcCC
Confidence 799999999999999988653 432 368888763
No 370
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=56.19 E-value=9.6 Score=42.16 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=26.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
-.|||+|+|.+|++||..+... |+ ++.++|+..
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----Gl-------~V~LvEk~d 39 (508)
T PRK12266 7 YDLLVIGGGINGAGIARDAAGR-----GL-------SVLLCEQDD 39 (508)
T ss_pred CCEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 4699999999999999887653 55 588888863
No 371
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=56.14 E-value=78 Score=33.91 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhc
Q 009519 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAP 383 (533)
Q Consensus 304 LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~ 383 (533)
.|+.++|=....+.. -++.|+|+|.-+-...+.+... .++ ++|++.|+. .+.....-..
T Consensus 116 AasavAa~~LA~~da-----~~laiIGaG~qA~~ql~a~~~v----~~~------~~I~i~~r~------~~~~e~~a~~ 174 (330)
T COG2423 116 AASAVAAKYLARKDA-----STLAIIGAGAQARTQLEALKAV----RDI------REIRVYSRD------PEAAEAFAAR 174 (330)
T ss_pred HHHHHHHHHhccCCC-----cEEEEECCcHHHHHHHHHHHhh----CCc------cEEEEEcCC------HHHHHHHHHH
Confidence 344555555555544 4689999998755554444432 233 567777662 1111111111
Q ss_pred cccccCCcCCccCCCCHHHHhcccCCcEEEEeccC-CCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhc
Q 009519 384 FAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFK 459 (533)
Q Consensus 384 ~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~-~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~ 459 (533)
+.+.... ......|+++||++ .|+++.++.. .-.|+.++|+. .-=|.-.=||+-.+.|+.+|-..+
T Consensus 175 l~~~~~~--~v~a~~s~~~av~~--aDiIvt~T~s~~Pil~~~~l~~------G~hI~aiGad~p~k~Eld~e~l~r 241 (330)
T COG2423 175 LRKRGGE--AVGAADSAEEAVEG--ADIVVTATPSTEPVLKAEWLKP------GTHINAIGADAPGKRELDPEVLAR 241 (330)
T ss_pred HHhhcCc--cceeccCHHHHhhc--CCEEEEecCCCCCeecHhhcCC------CcEEEecCCCCcccccCCHHHHHh
Confidence 2121110 00135789999999 9999988643 46788888872 233555567888889999987665
No 372
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=56.14 E-value=26 Score=35.83 Aligned_cols=35 Identities=14% Similarity=0.320 Sum_probs=26.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.||.|+|+|..|-.+|.-|++ .|.. ...+|+++|+
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~-----~g~~---~~~~I~v~~r 37 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMIN-----KNIV---SPDQIICSDL 37 (272)
T ss_pred CeEEEECccHHHHHHHHHHHH-----CCCC---CCceEEEECC
Confidence 589999999999999998864 3431 1246888876
No 373
>PLN02463 lycopene beta cyclase
Probab=56.10 E-value=9.2 Score=41.99 Aligned_cols=21 Identities=43% Similarity=0.684 Sum_probs=18.3
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (533)
-.|+|+|||.||+.+|..+.+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~ 49 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSE 49 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHH
Confidence 468999999999999988754
No 374
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=56.00 E-value=1.8e+02 Score=31.81 Aligned_cols=103 Identities=18% Similarity=0.333 Sum_probs=54.5
Q ss_pred CCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhC--CCceeeeecCCCchHHHHHHHH-hcc
Q 009519 212 PQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARW--PKAIVQFEDFQMKWAFETLERY-RKR 288 (533)
Q Consensus 212 P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~--P~~~I~~EDf~~~~af~iL~ry-r~~ 288 (533)
|...+|.+.+.-..=+++.+|| +|.+||-...+..- |+=++..+ ++-+++ ..+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~----------------~f~~~~~~~~~~~~grpTPL~~~~--------~Ls~~~gg~~ 75 (397)
T PRK04346 20 PETLMPALEELEEAYEKAKNDP----------------EFQAELDYLLKNYVGRPTPLYFAE--------RLSEHLGGAK 75 (397)
T ss_pred CHHHHHHHHHHHHHHHHHhcCH----------------HHHHHHHHHHHHhcCCCCCceEhH--------HHHHHcCCCe
Confidence 3344455555544456677887 67777766666542 33344332 222233 123
Q ss_pred CceeccCcchhHHHHHHHHHHHH---HHhCCCCCCCCCceEEE-eCchhHHHHHHHHHHHH
Q 009519 289 FCMFNDDIQGTAGVALAGLLGTV---RAQGLSLTDFADQKIVV-VGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 289 ~~~FnDDiQGTaaV~LAgli~Al---r~~g~~l~dl~~~riv~-~GAGsAg~GiA~ll~~~ 345 (533)
+=.=.+|.+-|++.=.=+.++.+ +..|+ .+++. .|||..|+++|-.....
T Consensus 76 IylK~EdlnptGS~K~r~al~~~l~A~~~Gk-------~~vIaetgaGnhG~A~A~~aa~~ 129 (397)
T PRK04346 76 IYLKREDLNHTGAHKINNVLGQALLAKRMGK-------KRIIAETGAGQHGVATATAAALL 129 (397)
T ss_pred EEEEECCCCCccchHHHHHHHHHHHHHHcCC-------CeEEEecCcHHHHHHHHHHHHHc
Confidence 33335555556554322222222 22232 46666 79999999998766544
No 375
>PRK06046 alanine dehydrogenase; Validated
Probab=55.73 E-value=1.1e+02 Score=31.95 Aligned_cols=105 Identities=12% Similarity=0.103 Sum_probs=62.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.++.|+|+|..|...++.+... .++ ++++++|++- + ........+.+.. .+. .....++.|+
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~----~~i------~~v~v~~r~~----~--~~~~~~~~~~~~~-~~~-v~~~~~~~~~ 191 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV----FDL------EEVRVYDRTK----S--SAEKFVERMSSVV-GCD-VTVAEDIEEA 191 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh----CCc------eEEEEECCCH----H--HHHHHHHHHHhhc-Cce-EEEeCCHHHH
Confidence 7999999999988877666542 233 6888888741 1 1222222222110 000 0123578888
Q ss_pred hcccCCcEEEEeccC-CCCCCHHHHHHhhhcCCCCCeEEecC-CCCCcccCCHHH
Q 009519 404 VRKVKPHVLLGLSGV-GGVFNEEVLKAMRESDSVKPAIFAMS-NPTMNAECTAAD 456 (533)
Q Consensus 404 V~~vkptvLIG~S~~-~g~Fteevv~~Ma~~~~erPIIFaLS-NPt~~aE~tpe~ 456 (533)
++ .|+++-++.. ..+|..++++. .-.|-++. +-..+.|+.++-
T Consensus 192 l~---aDiVv~aTps~~P~~~~~~l~~-------g~hV~~iGs~~p~~~El~~~~ 236 (326)
T PRK06046 192 CD---CDILVTTTPSRKPVVKAEWIKE-------GTHINAIGADAPGKQELDPEI 236 (326)
T ss_pred hh---CCEEEEecCCCCcEecHHHcCC-------CCEEEecCCCCCccccCCHHH
Confidence 85 7998876542 36788887763 23466665 433468999874
No 376
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=55.63 E-value=73 Score=33.92 Aligned_cols=134 Identities=13% Similarity=0.145 Sum_probs=70.5
Q ss_pred ccccccCChhhHHHHHhcCCCCCeeEEE-EecCceeeccCCCCCCcccccchh-hhhH-----hhhcCCCCCceecEEee
Q 009519 149 GMYFSAKDKGEMMSMIYNWPAQQVDMIV-LTDGSRILGLGDLGVQGIGIPIGK-LDVY-----VAAAGINPQRILPVMLD 221 (533)
Q Consensus 149 Glyis~~d~~~i~~~l~n~p~~~v~viV-VTDG~rILGLGDlG~~Gm~I~~GK-l~LY-----~a~aGI~P~~~lPI~LD 221 (533)
|.|-...|-..+.++|... ++++.. .+.|+++=-+=..+-...-|.++- ...+ ..=.||. .+ ..+
T Consensus 167 g~~~~~~d~~el~~lL~~~---Gi~~~~~~~~~~~~~~i~~~~~A~~niv~~~~~~~~~a~~L~~r~GiP---~~--~~~ 238 (406)
T cd01967 167 GEYNIGGDAWVIKPLLEEL---GIRVNATFTGDGTVDELRRAHRAKLNLVHCSRSMNYLAREMEERYGIP---YM--EVN 238 (406)
T ss_pred eccccchhHHHHHHHHHHc---CCEEEEEeCCCCCHHHHhhCccCCEEEEEChHHHHHHHHHHHHhhCCC---EE--Eec
Confidence 4443345777788888864 566655 455666655555555544443321 2211 1123443 11 000
Q ss_pred ccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCceeeeecCCCchHHHHHHHHhccCceeccCcchhHH
Q 009519 222 VGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAG 301 (533)
Q Consensus 222 vGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaa 301 (533)
++|+ +-.++|++.+-+.+.. ...+-+.+++.+.++
T Consensus 239 -------------p~G~-----------~~t~~~l~~l~~~lg~---------~~~~~~~i~~~~~~~------------ 273 (406)
T cd01967 239 -------------FYGF-----------EDTSESLRKIAKFFGD---------EEKAEEVIAEEEARI------------ 273 (406)
T ss_pred -------------CCcH-----------HHHHHHHHHHHHHhCC---------HHHHHHHHHHHHHHH------------
Confidence 1121 3467888887776643 123445555555442
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHH
Q 009519 302 VALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 302 V~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~ 344 (533)
..++......+.. .|++|++.+.-..++++++.+
T Consensus 274 ------~~~l~~~~~~l~g---krv~I~~~~~~~~~~~~~l~e 307 (406)
T cd01967 274 ------KPELEKYRERLKG---KKVIIYTGGARSWHVIAALRE 307 (406)
T ss_pred ------HHHHHHHHHhccC---CEEEEEccCcchHHHHHHHHH
Confidence 2233333344455 899998887777777765554
No 377
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=55.60 E-value=12 Score=38.43 Aligned_cols=36 Identities=19% Similarity=0.360 Sum_probs=28.7
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi 370 (533)
..+|+|+|+|-+|+.+|-.|.+. |. +|.++|++..-
T Consensus 4 ~~~vvVIGgGi~Gls~A~~La~~-----G~-------~V~vie~~~~~ 39 (387)
T COG0665 4 KMDVVIIGGGIVGLSAAYYLAER-----GA-------DVTVLEAGEAG 39 (387)
T ss_pred cceEEEECCcHHHHHHHHHHHHc-----CC-------EEEEEecCccC
Confidence 37899999999999999988764 42 67888876553
No 378
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.58 E-value=13 Score=40.40 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
++++|+|+|.+|+.+|+.|.+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~ 38 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL 38 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC
Confidence 8999999999999999888653
No 379
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=55.43 E-value=46 Score=31.95 Aligned_cols=146 Identities=14% Similarity=0.159 Sum_probs=87.9
Q ss_pred ccCCCccccccCChhhHHHHHhcCCCCCeeEEEEecC--ceeeccCCCCCC--cccccchhhhhHhhhcCCCCCceecEE
Q 009519 144 FRRPRGMYFSAKDKGEMMSMIYNWPAQQVDMIVLTDG--SRILGLGDLGVQ--GIGIPIGKLDVYVAAAGINPQRILPVM 219 (533)
Q Consensus 144 ~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG--~rILGLGDlG~~--Gm~I~~GKl~LY~a~aGI~P~~~lPI~ 219 (533)
-+++.|+-++..|.....+.+..+...++.|+.+-.. ..-..+--.|.+ .+|-..|+..+-....+ ..|+
T Consensus 53 ~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~------~~v~ 126 (257)
T PF13407_consen 53 SQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK------GKVL 126 (257)
T ss_dssp HTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT------EEEE
T ss_pred HhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC------ceEE
Confidence 4568999999998887777777776678887776554 122222233432 66777777777666554 4444
Q ss_pred eeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCc-eee---eecCCCchHHHHHHHHhccCceeccC
Q 009519 220 LDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQ---FEDFQMKWAFETLERYRKRFCMFNDD 295 (533)
Q Consensus 220 LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~-~I~---~EDf~~~~af~iL~ryr~~~~~FnDD 295 (533)
+=.|.- ......+..+-|.++++. +|++ .+. ..++....+.+..+++-...+ -|=
T Consensus 127 ~~~~~~------------------~~~~~~~r~~g~~~~l~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~~ 185 (257)
T PF13407_consen 127 ILSGSP------------------GNPNTQERLEGFRDALKE-YPGVEIVDEYEYTDWDPEDARQAIENLLQANP--VDA 185 (257)
T ss_dssp EEESST------------------TSHHHHHHHHHHHHHHHH-CTTEEEEEEEEECTTSHHHHHHHHHHHHHHTT--EEE
T ss_pred eccCCC------------------CchHHHHHHHHHHHHHhh-cceeeeeeeeeccCCCHHHHHHHHHHhhhcCC--ceE
Confidence 433321 112233467888888888 8876 443 347888888876666654432 111
Q ss_pred cchhHHHHHHHHHHHHHHhCC
Q 009519 296 IQGTAGVALAGLLGTVRAQGL 316 (533)
Q Consensus 296 iQGTaaV~LAgli~Alr~~g~ 316 (533)
|=.+....+-|++.|++-.|+
T Consensus 186 i~~~~~~~~~g~~~al~~~g~ 206 (257)
T PF13407_consen 186 IIACNDGMALGAAQALQQAGR 206 (257)
T ss_dssp EEESSHHHHHHHHHHHHHTTC
T ss_pred EEeCCChHHHHHHHHHHHcCC
Confidence 112222334478888998887
No 380
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=55.37 E-value=9.8 Score=42.58 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=25.6
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
.|+|+|||.||+..|..+.+. | .++.++|+..
T Consensus 6 DVvIIGgGpAGL~AA~~lar~-----g-------~~V~liE~~~ 37 (555)
T TIGR03143 6 DLIIIGGGPAGLSAGIYAGRA-----K-------LDTLIIEKDD 37 (555)
T ss_pred cEEEECCCHHHHHHHHHHHHC-----C-------CCEEEEecCC
Confidence 699999999999999877653 4 3688888753
No 381
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=55.35 E-value=13 Score=39.48 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=25.4
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi 370 (533)
|+|+|||.||+.+|..|.+. ..|+ +|.++|+.-.+
T Consensus 2 viIvGaG~AGl~lA~~L~~~---~~g~-------~V~lle~~~~~ 36 (370)
T TIGR01789 2 CIIVGGGLAGGLIALRLQRA---RPDF-------RIRVIEAGRTI 36 (370)
T ss_pred EEEECccHHHHHHHHHHHhc---CCCC-------eEEEEeCCCCC
Confidence 79999999999999877754 1254 56677765433
No 382
>PRK06185 hypothetical protein; Provisional
Probab=55.26 E-value=10 Score=39.76 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=26.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
..|+|+|||.+|+..|-.|.+ .|+ ++.++|++.
T Consensus 7 ~dV~IvGgG~~Gl~~A~~La~-----~G~-------~v~liE~~~ 39 (407)
T PRK06185 7 TDCCIVGGGPAGMMLGLLLAR-----AGV-------DVTVLEKHA 39 (407)
T ss_pred ccEEEECCCHHHHHHHHHHHh-----CCC-------cEEEEecCC
Confidence 679999999999999977754 465 577788763
No 383
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=55.23 E-value=12 Score=33.78 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=25.8
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
|+|+|||+.|.-+|-.|.++ | .++.++++..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-----g-------~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-----G-------HDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-----T-------CEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-----C-------CceEEEEccc
Confidence 78999999999999988764 2 3688888876
No 384
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=55.23 E-value=12 Score=38.09 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=25.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi 370 (533)
--++|+|||+||+..|..|.+. |+ ++.+++++=-+
T Consensus 18 ~DV~IVGaGpaGl~aA~~La~~-----g~-------kV~v~E~~~~~ 52 (230)
T PF01946_consen 18 YDVAIVGAGPAGLTAAYYLAKA-----GL-------KVAVIERKLSP 52 (230)
T ss_dssp ESEEEE--SHHHHHHHHHHHHH-----TS--------EEEEESSSS-
T ss_pred CCEEEECCChhHHHHHHHHHHC-----CC-------eEEEEecCCCC
Confidence 5699999999999999888764 54 68888876433
No 385
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=55.20 E-value=5.6 Score=44.52 Aligned_cols=46 Identities=26% Similarity=0.285 Sum_probs=31.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeE-----EEEeccCcccc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKF-----FLLDKDGLITK 372 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i-----~lvD~~GLi~~ 372 (533)
+||+|+|||-||++.|..|.+++. -++.-||+.++ =..|++|..++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~GGk~~s~~~~dg~~~E 51 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLGGKVASWRDSDGNHVE 51 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccCceeeeeecCCCCeee
Confidence 589999999999999999988643 23445666542 12556666554
No 386
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=55.19 E-value=10 Score=40.57 Aligned_cols=32 Identities=25% Similarity=0.433 Sum_probs=26.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-.+||+|+|+||+..|..+.+. | .++.++|++
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~-----g-------~~V~lie~~ 35 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKA-----G-------WRVALIEQS 35 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHC-----C-------CeEEEEcCC
Confidence 4699999999999999988764 4 368999975
No 387
>PRK07538 hypothetical protein; Provisional
Probab=54.86 E-value=10 Score=40.08 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.6
Q ss_pred eEEEeCchhHHHHHHHHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~ 344 (533)
+|+|+|||.||+..|-.|.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~ 21 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ 21 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh
Confidence 69999999999999987755
No 388
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=54.75 E-value=10 Score=44.17 Aligned_cols=108 Identities=18% Similarity=0.091 Sum_probs=62.9
Q ss_pred HHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---ccc-----CCHHHHhcccCCcEEEecCCCC
Q 009519 402 EVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NAE-----CTAADAFKHAGENIVFASGSPF 473 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~---~aE-----~tpe~A~~wt~Grai~AtGSPf 473 (533)
++=+.++|+++|..+| .+.=-.++.+.+ . +-+|=|.+=..||.+ +.| -|.++..++.- . |+..-=.
T Consensus 413 ~l~~~~~~~~ilasNT-Ssl~i~~la~~~-~-~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~--~-~~~~lgk 486 (715)
T PRK11730 413 EVEQKVREDTILASNT-STISISLLAKAL-K-RPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVV--A-YASKMGK 486 (715)
T ss_pred HHHhhCCCCcEEEEcC-CCCCHHHHHhhc-C-CCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHH--H-HHHHhCC
Confidence 3334578999998776 344444555544 2 556668888999973 223 34444444321 0 1111124
Q ss_pred cceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHH
Q 009519 474 ENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520 (533)
Q Consensus 474 ~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 520 (533)
.||..+ +.||-.=|-..+|-+--++.+...- .+.+-+-+|.+
T Consensus 487 ~pv~v~----d~pGfv~nRi~~~~~~ea~~lv~~G-a~~e~ID~a~~ 528 (715)
T PRK11730 487 TPIVVN----DCPGFFVNRVLFPYFAGFSQLLRDG-ADFRQIDKVME 528 (715)
T ss_pred ceEEec----CcCchhHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 455542 6788888888888776665555444 67776766653
No 389
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=54.72 E-value=11 Score=40.48 Aligned_cols=30 Identities=37% Similarity=0.521 Sum_probs=25.3
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.++|+|||.||+..|..+.+. | .++.++|+
T Consensus 3 DvvVIG~G~aGl~aA~~la~~-----G-------~~v~lie~ 32 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQL-----G-------LKVALVEK 32 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEec
Confidence 589999999999999888753 4 37889998
No 390
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=54.62 E-value=63 Score=36.46 Aligned_cols=34 Identities=9% Similarity=0.261 Sum_probs=25.1
Q ss_pred HHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHH
Q 009519 309 GTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 309 ~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.++.-...-|.. .|+.|+|-..-.+|+++.|.+.
T Consensus 352 dam~d~~~~l~G---KrvaI~gdpd~~~~l~~fL~El 385 (515)
T TIGR01286 352 DAMTDSHAWLHG---KRFAIYGDPDFVMGLVRFVLEL 385 (515)
T ss_pred HHHHHHHHHhcC---ceEEEECCHHHHHHHHHHHHHC
Confidence 333333344555 8999999999999999999764
No 391
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=54.59 E-value=39 Score=37.04 Aligned_cols=125 Identities=24% Similarity=0.326 Sum_probs=84.9
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC
Q 009519 294 DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE 373 (533)
Q Consensus 294 DDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~ 373 (533)
|.-.||+--++-|++.|. ..-+.- ..+|+.|=|--|-|||..+...++ ++++.+-
T Consensus 186 DNrYGtgqS~~DgI~RaT---n~liaG---K~vVV~GYG~vGrG~A~~~rg~GA------------~ViVtEv------- 240 (420)
T COG0499 186 DNRYGTGQSLLDGILRAT---NVLLAG---KNVVVAGYGWVGRGIAMRLRGMGA------------RVIVTEV------- 240 (420)
T ss_pred ccccccchhHHHHHHhhh---ceeecC---ceEEEecccccchHHHHHhhcCCC------------eEEEEec-------
Confidence 778999999999998754 444555 899999999999999988765432 5554432
Q ss_pred CCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCC-CcccC
Q 009519 374 RKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT-MNAEC 452 (533)
Q Consensus 374 r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt-~~aE~ 452 (533)
++.+.-=|.- +| -.--++.||++. .|++|=+++.-++++.|.++.|. +. .|. +|-- -.-|+
T Consensus 241 ----DPI~AleA~M----dG-f~V~~m~~Aa~~--gDifiT~TGnkdVi~~eh~~~Mk----Dg-aIl--~N~GHFd~EI 302 (420)
T COG0499 241 ----DPIRALEAAM----DG-FRVMTMEEAAKT--GDIFVTATGNKDVIRKEHFEKMK----DG-AIL--ANAGHFDVEI 302 (420)
T ss_pred ----CchHHHHHhh----cC-cEEEEhHHhhhc--CCEEEEccCCcCccCHHHHHhcc----CC-eEE--ecccccceec
Confidence 2222211211 11 012458999998 89999999999999999999993 34 443 3432 23377
Q ss_pred CHHH----Hhccc
Q 009519 453 TAAD----AFKHA 461 (533)
Q Consensus 453 tpe~----A~~wt 461 (533)
..+. +++|.
T Consensus 303 ~~~~L~~~~~~~~ 315 (420)
T COG0499 303 DVAGLEELAVEKR 315 (420)
T ss_pred cHHHHHHhhhhHh
Confidence 7655 44554
No 392
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=54.52 E-value=12 Score=41.25 Aligned_cols=32 Identities=31% Similarity=0.620 Sum_probs=25.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||+|+|+|.||+..|..|... |. +++++|+.
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~-----g~-------~V~v~e~~ 175 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRA-----GH-------TVTVFERE 175 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-----CC-------eEEEEecC
Confidence 7999999999999999888653 43 57788764
No 393
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=54.47 E-value=34 Score=35.75 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=23.4
Q ss_pred CCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC-CCCC
Q 009519 408 KPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS-NPTM 448 (533)
Q Consensus 408 kptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS-NPt~ 448 (533)
+-|++||+|..+. |+++++.+.......--+++++ ||.+
T Consensus 127 ~~DvvI~IS~SG~--T~~vi~al~~Ak~~Ga~~IaIT~~~~s 166 (296)
T PRK12570 127 ADDVVVGIAASGR--TPYVIGALEYAKQIGATTIALSCNPDS 166 (296)
T ss_pred CCCEEEEEeCCCC--CHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 4699999997443 6778777733222223345565 4544
No 394
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=54.40 E-value=9.8 Score=41.81 Aligned_cols=37 Identities=22% Similarity=0.390 Sum_probs=31.5
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.|++ -+|+++|+|+.|.-+++.|+..++ ++|.++|.+
T Consensus 17 ~L~~---s~VlliG~gglGsEilKNLvL~GI-----------g~~tIvD~~ 53 (425)
T cd01493 17 ALES---AHVCLLNATATGTEILKNLVLPGI-----------GSFTIVDGS 53 (425)
T ss_pred HHhh---CeEEEEcCcHHHHHHHHHHHHcCC-----------CeEEEECCC
Confidence 3455 899999999999999999987655 689999986
No 395
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=54.39 E-value=71 Score=34.80 Aligned_cols=110 Identities=11% Similarity=0.186 Sum_probs=70.3
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccC--C---C--CCChhhhcccc--ccCCcCC
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKE--R---K--NLDPAAAPFAK--DPGDFMG 393 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~--r---~--~l~~~k~~~A~--~~~~~~~ 393 (533)
..||.++|+|.=|..||+++-.--. +.+.-+.+=++|.++.. ..+ + + +-+.+..+|-. +.++ .
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~---~~~~f~~~Vrmwv~ee~---i~~~~~~L~eiIN~~heN~KYlpg~~lP~--N 92 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVK---EFPIFDPQVRMWVFEEE---INGEAEKLTEIINSRHENVKYLPGIKLPE--N 92 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhh---hccccCceeeEEEeccc---cCChhHHHHHHhccccccccccCCccCCC--C
Confidence 4899999999999999999977533 34445556689988763 111 1 0 11111122221 1111 0
Q ss_pred ccCCCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 394 LREGASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 394 ~~~~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
..-..+|.|+++. +|+||=+ .|.-|+..+++.+.....++..-..|+
T Consensus 93 vvAv~dl~ea~~d--ADilvf~--vPhQf~~~ic~~l~g~vk~~~~aISL~ 139 (372)
T KOG2711|consen 93 VVAVPDLVEAAKD--ADILVFV--VPHQFIPRICEQLKGYVKPGATAISLI 139 (372)
T ss_pred eEecchHHHHhcc--CCEEEEe--CChhhHHHHHHHHhcccCCCCeEEEee
Confidence 0123689999999 9999843 478899999999976555666555554
No 396
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=54.34 E-value=14 Score=38.83 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=28.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
-.|+|+|||.+|+.+|-.|.+. .|. ++|.++|++.+
T Consensus 31 ~dvvIIGgGi~G~s~A~~L~~~----~g~------~~V~vle~~~~ 66 (407)
T TIGR01373 31 YDVIIVGGGGHGLATAYYLAKE----HGI------TNVAVLEKGWL 66 (407)
T ss_pred CCEEEECCcHHHHHHHHHHHHh----cCC------CeEEEEEcccc
Confidence 5799999999999999988763 243 36889988643
No 397
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=54.21 E-value=12 Score=41.13 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.4
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHH
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
+...||+|+|+|-+|.++|+.|...
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~ 37 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSEL 37 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHC
Confidence 3348999999999999999998754
No 398
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=54.09 E-value=7 Score=34.01 Aligned_cols=36 Identities=17% Similarity=0.385 Sum_probs=26.5
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
|++.+++|+|+|..|..=+++|+++. .++.++...-
T Consensus 5 l~~~~vlVvGgG~va~~k~~~Ll~~g------------A~v~vis~~~ 40 (103)
T PF13241_consen 5 LKGKRVLVVGGGPVAARKARLLLEAG------------AKVTVISPEI 40 (103)
T ss_dssp -TT-EEEEEEESHHHHHHHHHHCCCT------------BEEEEEESSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCC------------CEEEEECCch
Confidence 34499999999999998888887642 3788877653
No 399
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=54.06 E-value=39 Score=37.43 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=24.9
Q ss_pred HHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHH
Q 009519 308 LGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 308 i~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
..++.-....|.. .|++|+|.+.-..++++++.+.
T Consensus 312 ~~~l~~~~~~l~G---k~vaI~~~~~~~~~la~~l~El 346 (475)
T PRK14478 312 WAALEPYRPRLEG---KRVLLYTGGVKSWSVVKALQEL 346 (475)
T ss_pred HHHHHHHHHHhCC---CEEEEEcCCchHHHHHHHHHHC
Confidence 4444455555566 8999998888888898876543
No 400
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=54.02 E-value=11 Score=42.00 Aligned_cols=32 Identities=19% Similarity=0.609 Sum_probs=26.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-.|+|+|+|..|++||..|... |+ ++.++|+.
T Consensus 7 ~DVvIIGGGi~G~~iA~~La~r-----G~-------~V~LlEk~ 38 (546)
T PRK11101 7 TDVIIIGGGATGAGIARDCALR-----GL-------RCILVERH 38 (546)
T ss_pred ccEEEECcCHHHHHHHHHHHHc-----CC-------eEEEEECC
Confidence 4699999999999999988753 54 68888875
No 401
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=53.94 E-value=12 Score=42.69 Aligned_cols=34 Identities=35% Similarity=0.655 Sum_probs=27.1
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
..||+|+|+|.||+..|..|... |. ++.++|+..
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~-----G~-------~Vtv~e~~~ 343 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARA-----GV-------QVDVFDRHP 343 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-----CC-------cEEEEeCCC
Confidence 38999999999999999888764 43 477777653
No 402
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=53.92 E-value=9.8 Score=39.60 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=18.5
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (533)
+|+|+|||.||+..|-.|.++
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~ 23 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQA 23 (403)
T ss_pred CEEEECccHHHHHHHHHHhcC
Confidence 589999999999999888754
No 403
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=53.87 E-value=10 Score=39.33 Aligned_cols=44 Identities=23% Similarity=0.425 Sum_probs=33.9
Q ss_pred CCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcccc
Q 009519 318 LTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK 372 (533)
Q Consensus 318 l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~ 372 (533)
|+-|++++|+++|.|-.|--+++.|... |+ .+|.++|-+-+=.+
T Consensus 25 lekl~~~~V~VvGiGGVGSw~veALaRs-----Gi------g~itlID~D~v~vT 68 (263)
T COG1179 25 LEKLKQAHVCVVGIGGVGSWAVEALARS-----GI------GRITLIDMDDVCVT 68 (263)
T ss_pred HHHHhhCcEEEEecCchhHHHHHHHHHc-----CC------CeEEEEeccccccc
Confidence 3334459999999999998888887765 44 69999999866443
No 404
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=53.85 E-value=12 Score=40.11 Aligned_cols=32 Identities=34% Similarity=0.595 Sum_probs=26.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-.+||+|||.||+..|..+.+. | +++.++|+.
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~-----g-------~~v~lie~~ 35 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKL-----G-------KKVALIEKG 35 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 5699999999999999887653 4 478889983
No 405
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=53.62 E-value=18 Score=43.00 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=30.6
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER 374 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r 374 (533)
++||||+|+|.||+..|+.|.+... .. .-.|.+++..--+.-+|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~-~~-------~~~Itvi~~e~~~~Y~r 46 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKAD-AA-------NFDITVFCEEPRIAYDR 46 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCC-CC-------CCeEEEEECCCCCcccC
Confidence 3699999999999999998875321 01 13688888765443334
No 406
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=53.56 E-value=12 Score=40.37 Aligned_cols=39 Identities=36% Similarity=0.523 Sum_probs=32.3
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
++++ |=||++|||..|.-++.+|+..++ ++|-+||-+-.
T Consensus 71 kl~~---syVVVVG~GgVGSwv~nmL~RSG~-----------qKi~iVDfdqV 109 (430)
T KOG2018|consen 71 KLTN---SYVVVVGAGGVGSWVANMLLRSGV-----------QKIRIVDFDQV 109 (430)
T ss_pred HhcC---cEEEEEecCchhHHHHHHHHHhcC-----------ceEEEechhhc
Confidence 4555 999999999999999999998765 57888886644
No 407
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=53.52 E-value=10 Score=39.42 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=25.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 6 ~dViIvGgG~aGl~~A~~La~-----~G~-------~V~liE~~ 37 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQ-----HGF-------SVAVLEHA 37 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhc-----CCC-------EEEEEcCC
Confidence 579999999999999977754 454 57888875
No 408
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=53.52 E-value=34 Score=40.66 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=88.4
Q ss_pred CceEEEeCchhHHHHHHHHHHHH---HHHHcCCChhhhcCeEEEEeccCccccCCC-CCChhhhccccccCCcCCccCCC
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQA---AARMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLREGA 398 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~---~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~-~l~~~k~~~A~~~~~~~~~~~~~ 398 (533)
..+|.++|.|..|.|++++|.+- +.++.|+.. +=.-++|+++.+.+.+. ++......+...... .+..
T Consensus 458 ~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~----~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~----~~~~ 529 (810)
T PRK09466 458 RIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEF----VLVGVVDSRRSLLNYDGLDASRALAFFDDEAVE----WDEE 529 (810)
T ss_pred eEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCE----EEEEEEeCCccccCccCCCHHHHHhhHHhhcCC----ccHH
Confidence 37899999999999999999774 222345532 22446799998877653 222222223222111 1234
Q ss_pred CHHHHhcccCCc--EEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---cccCCHHHHhc--ccCCcEE-----
Q 009519 399 SLLEVVRKVKPH--VLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NAECTAADAFK--HAGENIV----- 466 (533)
Q Consensus 399 ~L~e~V~~vkpt--vLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~---~aE~tpe~A~~--wt~Grai----- 466 (533)
.+.|.+....++ |+|=+++ +.-....+.+++. +...+|- +|=.. .++.-+ +..+ ..+|..+
T Consensus 530 ~~~e~i~~~~~~~~vvVd~t~-~~~~~~~~~~aL~---~G~~VVt--aNK~~~a~~~~~~~-~l~~~a~~~~~~~~yEas 602 (810)
T PRK09466 530 SLFLWLRAHPYDELVVLDVTA-SEQLALQYPDFAS---HGFHVIS--ANKLAGSSPSNFYR-QIKDAFAKTGRHWLYNAT 602 (810)
T ss_pred HHHHHHhhcCCCCcEEEECCC-ChHHHHHHHHHHH---cCCEEEc--CCcccccccHHHHH-HHHHHHHHcCCeEEEece
Confidence 567777765564 8888886 3345566777774 4666665 55322 123222 2111 1234433
Q ss_pred EecCCCCcceecCCCeeeecccccceeechhhhHHHH
Q 009519 467 FASGSPFENVDLGNGKIGHVNQANNMYLFPGIGLGTL 503 (533)
Q Consensus 467 ~AtGSPf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l 503 (533)
|+.|-|.=.. + +... .=+|...-+=||.-|.+
T Consensus 603 V~~giPii~~-l---~~l~-~~gd~i~~i~GIlnGT~ 634 (810)
T PRK09466 603 VGAGLPINHT-V---RDLR-NSGDSILAISGIFSGTL 634 (810)
T ss_pred eeeccChHHH-H---HHHH-hccCcEEEEEEEEccHH
Confidence 4667665111 1 1111 01677777777777753
No 409
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=53.16 E-value=9 Score=41.11 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=30.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHH-cC--CChhhhcC----eEEEEeccCcc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARM-AG--NNDAFARN----KFFLLDKDGLI 370 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~-~G--ls~~eA~~----~i~lvD~~GLi 370 (533)
++|+|+|||-||+..|..|.++.... .| ++.-||+. +++-....|..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~g~~ 55 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEKDFI 55 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeCCEE
Confidence 47999999999999999998753100 12 45556665 34544444543
No 410
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=53.12 E-value=11 Score=40.60 Aligned_cols=33 Identities=42% Similarity=0.778 Sum_probs=23.3
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi 370 (533)
|||+|+|.||+.-|-...+ .|+ ++.|+++.+.+
T Consensus 2 VVVvGgG~aG~~AAi~AAr-----~G~-------~VlLiE~~~~l 34 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAAR-----AGA-------KVLLIEKGGFL 34 (428)
T ss_dssp EEEE--SHHHHHHHHHHHH-----TTS--------EEEE-SSSSS
T ss_pred EEEECccHHHHHHHHHHHH-----CCC-------EEEEEECCccC
Confidence 7999999999999876654 464 78999998765
No 411
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=53.05 E-value=12 Score=40.44 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=25.2
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+||+|||+||+..|..+.+. | .++.++|++
T Consensus 3 vvVIGaGpaG~~aA~~aa~~-----g-------~~v~lie~~ 32 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAEL-----G-------ASVAMVERG 32 (463)
T ss_pred EEEECCCHHHHHHHHHHHHC-----C-------CeEEEEeCC
Confidence 89999999999999888763 4 378899975
No 412
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=52.98 E-value=19 Score=37.93 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=34.6
Q ss_pred cCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 294 DDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 294 DDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
|+..+.-+=-+|.-+.+.......... .+++|+|||+.|+..+.+... .|. ++|+++|.
T Consensus 143 ~~~~aal~epla~~~~~~a~~~~~~~~---~~V~V~GaGpIGLla~~~a~~-----~Ga------~~Viv~d~ 201 (350)
T COG1063 143 DEEAAALTEPLATAYHGHAERAAVRPG---GTVVVVGAGPIGLLAIALAKL-----LGA------SVVIVVDR 201 (350)
T ss_pred ChhhhhhcChhhhhhhhhhhccCCCCC---CEEEEECCCHHHHHHHHHHHH-----cCC------ceEEEeCC
Confidence 344444444445444442333333334 499999999999987444333 344 58998876
No 413
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=52.87 E-value=11 Score=41.63 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.+|+|+|||.+|+..|..|.+.
T Consensus 24 ~dVlIVGaGpaGl~lA~~L~~~ 45 (547)
T PRK08132 24 HPVVVVGAGPVGLALAIDLAQQ 45 (547)
T ss_pred CCEEEECCCHHHHHHHHHHHhC
Confidence 5899999999999999887653
No 414
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=52.85 E-value=13 Score=40.61 Aligned_cols=32 Identities=31% Similarity=0.685 Sum_probs=25.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||+|+|+|.||+..|..+... |. ++.++|+.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~-----G~-------~V~i~e~~ 173 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARA-----GV-------QVVVFDRH 173 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-----CC-------eEEEEecC
Confidence 7999999999999998887653 43 46677765
No 415
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=52.83 E-value=11 Score=41.45 Aligned_cols=32 Identities=34% Similarity=0.587 Sum_probs=26.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-.|||+|+|.+|.++|..+... |+ ++.+++++
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~r-----G~-------~V~LlEk~ 38 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGR-----GL-------KVLLCEKD 38 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEECC
Confidence 5799999999999999998753 54 58889876
No 416
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=52.42 E-value=17 Score=39.15 Aligned_cols=95 Identities=23% Similarity=0.381 Sum_probs=59.1
Q ss_pred CCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCc
Q 009519 315 GLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGL 394 (533)
Q Consensus 315 g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~ 394 (533)
|.++.+ ..+||+.+|+|.-|--+|=-+.. .|+ .++-||+. .+-+-+.-..+.|.-+.
T Consensus 5 gt~~~~-~a~kvmLLGSGELGKEvaIe~QR-----LG~-------eViAVDrY----~~APAmqVAhrs~Vi~M------ 61 (394)
T COG0027 5 GTPLRP-QATKVMLLGSGELGKEVAIEAQR-----LGV-------EVIAVDRY----ANAPAMQVAHRSYVIDM------ 61 (394)
T ss_pred cCCCCC-CCeEEEEecCCccchHHHHHHHh-----cCC-------EEEEecCc----CCChhhhhhhheeeeec------
Confidence 445543 44899999999999877644433 454 68889884 33222222222232222
Q ss_pred cCCCCHHHHhcccCCcEEE-----------------EeccCCC------CCCHHHHHHhhh
Q 009519 395 REGASLLEVVRKVKPHVLL-----------------GLSGVGG------VFNEEVLKAMRE 432 (533)
Q Consensus 395 ~~~~~L~e~V~~vkptvLI-----------------G~S~~~g------~Fteevv~~Ma~ 432 (533)
.+..-|..+|++.|||.+| |..-+|. ..+.|=||.+|+
T Consensus 62 lD~~al~avv~rekPd~IVpEiEAI~td~L~elE~~G~~VVP~ArAt~ltMnRegiRrlAA 122 (394)
T COG0027 62 LDGDALRAVVEREKPDYIVPEIEAIATDALVELEEEGYTVVPNARATKLTMNREGIRRLAA 122 (394)
T ss_pred cCHHHHHHHHHhhCCCeeeehhhhhhHHHHHHHHhCCceEccchHHHHhhhcHHHHHHHHH
Confidence 1335599999999999998 4444443 266777777765
No 417
>PRK07208 hypothetical protein; Provisional
Probab=52.38 E-value=13 Score=40.02 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.3
Q ss_pred CceEEEeCchhHHHHHHHHHHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
..+|+|+|||-||+..|..|.+.
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~ 26 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKR 26 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHC
Confidence 37899999999999999888764
No 418
>PRK06392 homoserine dehydrogenase; Provisional
Probab=52.33 E-value=68 Score=34.09 Aligned_cols=179 Identities=17% Similarity=0.216 Sum_probs=89.6
Q ss_pred eEEEeCchhHHHHHHHHHHHHHH-HHcCCChhhhcCeEEEEeccCccccCCC-CCChhhhccccccCCcCCcc-CCCCHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAA-RMAGNNDAFARNKFFLLDKDGLITKERK-NLDPAAAPFAKDPGDFMGLR-EGASLL 401 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~-~~~Gls~~eA~~~i~lvD~~GLi~~~r~-~l~~~k~~~A~~~~~~~~~~-~~~~L~ 401 (533)
||.++|.|..|-+++++|.+--. ++.|+.. +=+.+.|++|.+.+.+. ++..... +.+.. ...... ...++.
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l----~VVaVsds~g~l~~~~Gldl~~l~~-~~~~g-~l~~~~~~~~~~~ 75 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGI----SVVSVSDSKLSYYNERGLDIGKIIS-YKEKG-RLEEIDYEKIKFD 75 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCe----EEEEEEECCCcccCCcCCChHHHHH-HHhcC-ccccCCCCcCCHH
Confidence 79999999999999999876311 1223321 23556799998887652 2322211 11110 000000 112577
Q ss_pred HHhcccCCcEEEEeccC--CCC-CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHH--HHhcccCCcEEE-----ecCC
Q 009519 402 EVVRKVKPHVLLGLSGV--GGV-FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAA--DAFKHAGENIVF-----ASGS 471 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~--~g~-Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe--~A~~wt~Grai~-----AtGS 471 (533)
+.++ .++||+|=++.. .|. ...-+.+.+. +...+| .+|=-+.|+-..+ ++-+ ..|+.++ +.|-
T Consensus 76 ~ll~-~~~DVvVE~t~~~~~g~~~~~~~~~aL~---~G~hVV--TaNKgalA~~~~eL~~lA~-~~g~~~~~eatV~~g~ 148 (326)
T PRK06392 76 EIFE-IKPDVIVDVTPASKDGIREKNLYINAFE---HGIDVV--TANKSGLANHWHDIMDSAS-KNRRIIRYEATVAGGV 148 (326)
T ss_pred HHhc-CCCCEEEECCCCCCcCchHHHHHHHHHH---CCCEEE--cCCHHHHHhhHHHHHHHHH-HcCCeEEEeeeeeecc
Confidence 7665 589999988742 121 1222344442 344555 3554444433221 1111 2344444 4565
Q ss_pred CCcceecCCCeeeecccccceeechhhhHHH---HHhCC-cccCHHHHHHHHHHH
Q 009519 472 PFENVDLGNGKIGHVNQANNMYLFPGIGLGT---LLSGA-RFITDGMLQQAAEWY 522 (533)
Q Consensus 472 Pf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~---l~~~a-~~Itd~M~~aAA~al 522 (533)
|.=..- +. ---+|+..-+=||.-|. ++.+. ...+-+-.+.-|+++
T Consensus 149 Pii~~~----~~--~~~g~~i~~i~GilnGT~nyIl~~m~~g~~f~~al~eAq~l 197 (326)
T PRK06392 149 PLFSLR----DY--STLPSRIKNFRGIVSSTINYVIRQEANGRGFLDVVKIAQKM 197 (326)
T ss_pred chhhhh----hh--hcccCCEEEEEEEEeChHHHHHhhccCCCCHHHHHHHHHHc
Confidence 543321 11 12245677777887776 45544 233333334444433
No 419
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=52.30 E-value=6.9 Score=41.22 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=51.7
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCCHHHHh
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGASLLEVV 404 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V 404 (533)
|+|+|+|..|-.+++.|.+.. .. .++.+.|++--=-+.- ..+...+..+.+-+. .+..+|.+.+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~----~~------~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~-----~~~~~l~~~~ 65 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRG----PF------EEVTVADRNPEKAERLAEKLLGDRVEAVQVDV-----NDPESLAELL 65 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTT----CE-------EEEEEESSHHHHHHHHT--TTTTEEEEE--T-----TTHHHHHHHH
T ss_pred CEEEcCcHHHHHHHHHHhcCC----CC------CcEEEEECCHHHHHHHHhhccccceeEEEEec-----CCHHHHHHHH
Confidence 789999999999999887642 11 2788888741100000 001111111111110 1234589999
Q ss_pred cccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEE
Q 009519 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (533)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIF 441 (533)
++ .|++|-+++. .+.+.++++-.+ ...+.|=
T Consensus 66 ~~--~dvVin~~gp--~~~~~v~~~~i~--~g~~yvD 96 (386)
T PF03435_consen 66 RG--CDVVINCAGP--FFGEPVARACIE--AGVHYVD 96 (386)
T ss_dssp TT--SSEEEE-SSG--GGHHHHHHHHHH--HT-EEEE
T ss_pred hc--CCEEEECCcc--chhHHHHHHHHH--hCCCeec
Confidence 88 7999998853 388888887654 3445554
No 420
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=52.19 E-value=13 Score=40.33 Aligned_cols=31 Identities=39% Similarity=0.595 Sum_probs=26.2
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
|++|+|+|+||+..|..+.+. | +++.++|+.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-----g-------~~V~lie~~ 32 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-----G-------KNVTLIDEA 32 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEECC
Confidence 799999999999999888763 4 369999975
No 421
>PRK00536 speE spermidine synthase; Provisional
Probab=52.11 E-value=24 Score=36.51 Aligned_cols=94 Identities=7% Similarity=0.022 Sum_probs=55.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcccc-CCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITK-ERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~-~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||+|+|+|-.| +++-+++. + +++.|||-++-|++ .++.++..+..|..+.-+. ..-+.+
T Consensus 74 k~VLIiGGGDGg--~~REvLkh-------~-----~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l-----~~~~~~ 134 (262)
T PRK00536 74 KEVLIVDGFDLE--LAHQLFKY-------D-----THVDFVQADEKILDSFISFFPHFHEVKNNKNFTH-----AKQLLD 134 (262)
T ss_pred CeEEEEcCCchH--HHHHHHCc-------C-----CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEE-----eehhhh
Confidence 699999999874 45555443 1 38999999998776 3556776655443221111 111222
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEE
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIF 441 (533)
.- .-+-||+|-=|+ |+++-.+.+.+.+++.=|+.
T Consensus 135 ~~-~~~fDVIIvDs~----~~~~fy~~~~~~L~~~Gi~v 168 (262)
T PRK00536 135 LD-IKKYDLIICLQE----PDIHKIDGLKRMLKEDGVFI 168 (262)
T ss_pred cc-CCcCCEEEEcCC----CChHHHHHHHHhcCCCcEEE
Confidence 11 135899996654 77777766654344443333
No 422
>PRK06545 prephenate dehydrogenase; Validated
Probab=52.03 E-value=49 Score=35.06 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.||.|+|+|..|.++|..|...
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~ 22 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA 22 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc
Confidence 3799999999999999998654
No 423
>PRK05868 hypothetical protein; Validated
Probab=52.00 E-value=12 Score=39.31 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.2
Q ss_pred ceEEEeCchhHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~ 344 (533)
.+|+|+|||.||+..|-.|.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~ 22 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR 22 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh
Confidence 479999999999999987754
No 424
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=51.88 E-value=78 Score=33.62 Aligned_cols=163 Identities=19% Similarity=0.159 Sum_probs=92.8
Q ss_pred CCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhcc-ccccCCcCCccCCC
Q 009519 320 DFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPF-AKDPGDFMGLREGA 398 (533)
Q Consensus 320 dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~-A~~~~~~~~~~~~~ 398 (533)
++...++-|+|.|..|..+|+.+... |+ +|...|++.. ++..+.+ + ...
T Consensus 143 ~l~gktvGIiG~GrIG~avA~r~~~F-----gm-------~v~y~~~~~~--------~~~~~~~~~----------~y~ 192 (324)
T COG1052 143 DLRGKTLGIIGLGRIGQAVARRLKGF-----GM-------KVLYYDRSPN--------PEAEKELGA----------RYV 192 (324)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhcC-----CC-------EEEEECCCCC--------hHHHhhcCc----------eec
Confidence 44449999999999999999999833 33 5665655322 2221111 1 233
Q ss_pred CHHHHhcccCCcEEEEecc----CCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccCCcEEEecCC---
Q 009519 399 SLLEVVRKVKPHVLLGLSG----VGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAGENIVFASGS--- 471 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~----~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~Grai~AtGS--- 471 (533)
+|.|.++. .|+++-..- .-++|+++.++.|. +.-++.=.|.=.--=|----+|++ +|+ |.+.|.
T Consensus 193 ~l~ell~~--sDii~l~~Plt~~T~hLin~~~l~~mk----~ga~lVNtaRG~~VDe~ALi~AL~--~g~-i~gaglDV~ 263 (324)
T COG1052 193 DLDELLAE--SDIISLHCPLTPETRHLINAEELAKMK----PGAILVNTARGGLVDEQALIDALK--SGK-IAGAGLDVF 263 (324)
T ss_pred cHHHHHHh--CCEEEEeCCCChHHhhhcCHHHHHhCC----CCeEEEECCCccccCHHHHHHHHH--hCC-cceEEeeec
Confidence 49999988 899885431 13789999999993 456666555433211333334444 444 444441
Q ss_pred CCcceecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHHHHhcccC
Q 009519 472 PFENVDLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAEWYVCDNC 527 (533)
Q Consensus 472 Pf~pv~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~alA~~v~ 527 (533)
-+.|..++.--...++. .|+.+-|=++.+...++ ..|...+.+.+-+...
T Consensus 264 e~Ep~~~d~~l~~l~~~-~~vvltPHia~at~ea~-----~~m~~~~~~nl~~~~~ 313 (324)
T COG1052 264 ENEPALFDHPLLRLDNF-PNVVLTPHIASATEEAR-----KAMAELALENLEAFFD 313 (324)
T ss_pred CCCCCCCChhHhhccCC-CCEEEccccccccHHHH-----HHHHHHHHHHHHHHHc
Confidence 01111111000112333 56999999888775554 4455555555554443
No 425
>PRK09897 hypothetical protein; Provisional
Probab=51.81 E-value=17 Score=40.95 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=27.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+|+|+|+|++|+.+|..|+.. +- .-+|.++|+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~-----~~-----~l~V~lfEp~ 35 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQ-----QT-----PLSISIFEQA 35 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhc-----CC-----CCcEEEEecC
Confidence 3799999999999999999762 11 1379999984
No 426
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=51.72 E-value=14 Score=40.15 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=26.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-.+||+|+|+||+..|..+.+. | +++.++|+.
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~-----G-------~~v~lie~~ 36 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQL-----G-------LKTALVEKG 36 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEEcc
Confidence 5699999999999999887663 4 379999975
No 427
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=51.59 E-value=54 Score=34.36 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=56.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec-------cCccccCCCCCChhhhccccccCCcCCccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK-------DGLITKERKNLDPAAAPFAKDPGDFMGLRE 396 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~-------~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~ 396 (533)
.||.|+|||+.|.-.|-.|.++. -+ =.+|.-++ +||...+... .......
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-----~~-----V~~~~R~~~~~~l~~~GL~i~~~~~-----~~~~~~~-------- 57 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-----HD-----VTLLVRSRRLEALKKKGLRIEDEGG-----NFTTPVV-------- 57 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-----Ce-----EEEEecHHHHHHHHhCCeEEecCCC-----ccccccc--------
Confidence 38999999999999998888763 11 12333333 2665554322 0011100
Q ss_pred CCCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCccc
Q 009519 397 GASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNAE 451 (533)
Q Consensus 397 ~~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~aE 451 (533)
...-.+... ++|++| ++. .--.++++++.+.....+..+|..|-|=-...|
T Consensus 58 ~~~~~~~~~--~~Dlvi-v~v-Ka~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e 108 (307)
T COG1893 58 AATDAEALG--PADLVI-VTV-KAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEE 108 (307)
T ss_pred cccChhhcC--CCCEEE-EEe-ccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHH
Confidence 000111111 367655 332 245788888888765566667777888776555
No 428
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=51.58 E-value=13 Score=40.48 Aligned_cols=31 Identities=26% Similarity=0.664 Sum_probs=21.0
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|+|+|||+||+-.|-.+.+ .|. ++.+++++
T Consensus 2 dviIIGgGaAGl~aA~~aa~-----~g~-------~V~vlE~~ 32 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAE-----KGA-------RVLVLERN 32 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHH-----TT---------EEEE-SS
T ss_pred cEEEECCCHHHHHHHHHHHh-----CCC-------CEEEEeCC
Confidence 58999999999999888744 343 68888875
No 429
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=51.52 E-value=13 Score=39.33 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=19.2
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (533)
||+|+|||.||+..|..|..+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~ 22 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH 22 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc
Confidence 799999999999999998864
No 430
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=51.50 E-value=25 Score=30.71 Aligned_cols=95 Identities=21% Similarity=0.175 Sum_probs=55.1
Q ss_pred CchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCC
Q 009519 330 GAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKP 409 (533)
Q Consensus 330 GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkp 409 (533)
|.|..|.+++++|...-. .-++ +=+.++|+++++... +....... ....++.+.++..++
T Consensus 1 G~G~VG~~l~~~l~~~~~-~~~~------~v~~v~~~~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~~~ 60 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQE-RIDL------EVVGVADRSMLISKD-------WAASFPDE------AFTTDLEELIDDPDI 60 (117)
T ss_dssp --SHHHHHHHHHHHHTHH-HCEE------EEEEEEESSEEEETT-------HHHHHTHS------CEESSHHHHHTHTT-
T ss_pred CCCHHHHHHHHHHHhCcc-cCCE------EEEEEEECCchhhhh-------hhhhcccc------cccCCHHHHhcCcCC
Confidence 789999999999987532 1022 346778887444333 11111111 124679999997789
Q ss_pred cEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCCcc
Q 009519 410 HVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTMNA 450 (533)
Q Consensus 410 tvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~~a 450 (533)
|++|=+++ +...++-+.+.+. +..++|- +|..+.+
T Consensus 61 dvvVE~t~-~~~~~~~~~~~L~---~G~~VVt--~nk~ala 95 (117)
T PF03447_consen 61 DVVVECTS-SEAVAEYYEKALE---RGKHVVT--ANKGALA 95 (117)
T ss_dssp SEEEE-SS-CHHHHHHHHHHHH---TTCEEEE--S-HHHHH
T ss_pred CEEEECCC-chHHHHHHHHHHH---CCCeEEE--ECHHHhh
Confidence 99999954 5666666666663 3556664 5655544
No 431
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=51.38 E-value=14 Score=39.10 Aligned_cols=32 Identities=25% Similarity=0.532 Sum_probs=24.6
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+|+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~-----~G~-------~v~viE~~ 34 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK-----AGI-------DNVILERQ 34 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH-----CCC-------CEEEEECC
Confidence 579999999999999977654 465 35666654
No 432
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=51.33 E-value=50 Score=36.75 Aligned_cols=137 Identities=18% Similarity=0.149 Sum_probs=79.4
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHH--HcCCChhhhcCeEEEEeccCccccCC-CCCChhhhccccccCCcCCccCCCC
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAAR--MAGNNDAFARNKFFLLDKDGLITKER-KNLDPAAAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~--~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~~~ 399 (533)
.||.|+|| |..|..+|-.|+.--+- .+|+. .+++++|.+-=...+- -+|.+...++-+. . .-..+
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~-----~eLvliD~~~~~a~G~amDL~daa~~~~~~---v---~i~~~ 169 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIA-----LKLLGSERSKQALEGVAMELEDSLYPLLRE---V---SIGID 169 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcc-----cEEEEEcCCcchhHHHHHHHHHhhhhhcCc---e---EEecC
Confidence 79999999 99999999988764110 01332 3788888742211111 1333332233211 1 00122
Q ss_pred HHHHhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhcccC--C
Q 009519 400 LLEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHAG--E 463 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt~--G 463 (533)
-.|..++ .|++|=+.+.+ |- +=+++.+.+.+..++.-||+-.|||.. +...-+++++. -
T Consensus 170 ~ye~~kd--aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvD---v~t~v~~k~sg~~~ 244 (444)
T PLN00112 170 PYEVFQD--AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCN---TNALICLKNAPNIP 244 (444)
T ss_pred CHHHhCc--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHH---HHHHHHHHHcCCCC
Confidence 3566777 89988555443 31 124556666421478999999999984 66666666652 2
Q ss_pred cEEEecCCCCcce
Q 009519 464 NIVFASGSPFENV 476 (533)
Q Consensus 464 rai~AtGSPf~pv 476 (533)
..+|.||.=.+.-
T Consensus 245 ~rViGtgT~LDsa 257 (444)
T PLN00112 245 AKNFHALTRLDEN 257 (444)
T ss_pred cceEEeeccHHHH
Confidence 4577777555544
No 433
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=51.29 E-value=1.1e+02 Score=31.01 Aligned_cols=88 Identities=22% Similarity=0.255 Sum_probs=53.1
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHH
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLE 402 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e 402 (533)
.||.|+|+ |..|-.+++.+... .++ +=..++|++. .+. ... ..+ +.....++.+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~----~~~------elvav~d~~~----~~~--~~~-~~~--------~i~~~~dl~~ 56 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA----EDL------ELVAAVDRPG----SPL--VGQ-GAL--------GVAITDDLEA 56 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC----CCC------EEEEEEecCC----ccc--ccc-CCC--------CccccCCHHH
Confidence 48999999 99999888776542 222 3455677642 111 000 001 0112467888
Q ss_pred HhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEe
Q 009519 403 VVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA 442 (533)
Q Consensus 403 ~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFa 442 (533)
+++ ++|++|=+|. |... .++++...+ ...|+|..
T Consensus 57 ll~--~~DvVid~t~-p~~~-~~~~~~al~--~G~~vvig 90 (257)
T PRK00048 57 VLA--DADVLIDFTT-PEAT-LENLEFALE--HGKPLVIG 90 (257)
T ss_pred hcc--CCCEEEECCC-HHHH-HHHHHHHHH--cCCCEEEE
Confidence 886 4999998884 4544 566655543 56788865
No 434
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=51.03 E-value=14 Score=41.37 Aligned_cols=103 Identities=13% Similarity=0.008 Sum_probs=56.2
Q ss_pred cCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---cccCC-----HHHHhcccCCcEEE-ecCCCCccee
Q 009519 407 VKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NAECT-----AADAFKHAGENIVF-ASGSPFENVD 477 (533)
Q Consensus 407 vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~---~aE~t-----pe~A~~wt~Grai~-AtGSPf~pv~ 477 (533)
.+|+.+|...+ ..++.+-+..-. .+-+|=+-+-+-||.+ +.|+- .++++++.. .++ .-| -.||.
T Consensus 112 ~~~~ailasnt--Stl~i~~la~~~-~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~--~l~~~lg--k~pv~ 184 (507)
T PRK08268 112 VSPDCILATNT--SSLSITAIAAAL-KHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALY--ALARAWG--KTPVR 184 (507)
T ss_pred CCCCcEEEECC--CCCCHHHHHhhc-CCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHH--HHHHHcC--CceEE
Confidence 46888887433 223333232221 1344547777788765 33433 344444321 111 111 11222
Q ss_pred cCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHHH
Q 009519 478 LGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAAE 520 (533)
Q Consensus 478 ~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~ 520 (533)
. | ..||-.+|-+.+|.+.=+..++..-.++.+-+..|.+
T Consensus 185 v--~--d~pGfi~Nrll~~~~~Ea~~l~~~g~~~~~~iD~al~ 223 (507)
T PRK08268 185 A--K--DTPGFIVNRAARPYYTEALRVLEEGVADPATIDAILR 223 (507)
T ss_pred e--c--CCCChHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2 1 3467899999999998888888777776666666643
No 435
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=51.02 E-value=28 Score=36.35 Aligned_cols=106 Identities=20% Similarity=0.126 Sum_probs=56.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.++.|+|+|.-|..-++.+... .++ ++|+++|+. .. ....+...+.+..-+ .....+++|+
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~----~~i------~~v~v~~r~----~~--~~~~~~~~~~~~~~~---v~~~~~~~~a 189 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAV----RPI------KEVRVYSRS----PE--RAEAFAARLRDLGVP---VVAVDSAEEA 189 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHH----S--------SEEEEE-SS----HH--HHHHHHHHHHCCCTC---EEEESSHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHHh----CCc------eEEEEEccC----hh--HHHHHHHhhcccccc---ceeccchhhh
Confidence 6899999999988888877664 223 689988863 11 122222222221111 1135789999
Q ss_pred hcccCCcEEEEeccCCC---CCCHHHHHHhhhcCCCCCeEEecCCCC-CcccCCHHHH
Q 009519 404 VRKVKPHVLLGLSGVGG---VFNEEVLKAMRESDSVKPAIFAMSNPT-MNAECTAADA 457 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g---~Fteevv~~Ma~~~~erPIIFaLSNPt-~~aE~tpe~A 457 (533)
++. .|+++.+..... .|+.++++ +.-.|-++.--+ .+.|+.++-.
T Consensus 190 v~~--aDii~taT~s~~~~P~~~~~~l~-------~g~hi~~iGs~~~~~~El~~~~~ 238 (313)
T PF02423_consen 190 VRG--ADIIVTATPSTTPAPVFDAEWLK-------PGTHINAIGSYTPGMRELDDELL 238 (313)
T ss_dssp HTT--SSEEEE----SSEEESB-GGGS--------TT-EEEE-S-SSTTBESB-HHHH
T ss_pred ccc--CCEEEEccCCCCCCccccHHHcC-------CCcEEEEecCCCCchhhcCHHHh
Confidence 999 999998766433 68888777 344677766432 2458887643
No 436
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=50.87 E-value=32 Score=32.73 Aligned_cols=46 Identities=26% Similarity=0.480 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 307 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 307 li~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+.++...+.-... ++|+|+|+|+.|..++++... .| .+++.++++
T Consensus 122 a~~~l~~~~~~~~~---~~vli~g~~~~G~~~~~~a~~-----~g-------~~v~~~~~~ 167 (271)
T cd05188 122 AYHALRRAGVLKPG---DTVLVLGAGGVGLLAAQLAKA-----AG-------ARVIVTDRS 167 (271)
T ss_pred HHHHHHhccCCCCC---CEEEEECCCHHHHHHHHHHHH-----cC-------CeEEEEcCC
Confidence 34445444443445 799999998866666554432 34 267777664
No 437
>PLN02985 squalene monooxygenase
Probab=50.75 E-value=16 Score=40.84 Aligned_cols=32 Identities=22% Similarity=0.579 Sum_probs=24.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-+|+|+|||.||+..|-.|.+ .|. ++.++|++
T Consensus 44 ~DViIVGAG~aGlalA~aLa~-----~G~-------~V~vlEr~ 75 (514)
T PLN02985 44 TDVIIVGAGVGGSALAYALAK-----DGR-------RVHVIERD 75 (514)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----cCC-------eEEEEECc
Confidence 689999999999999987764 353 56667664
No 438
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=50.74 E-value=56 Score=33.71 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=51.3
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCc-CCccCCCCHH
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDF-MGLREGASLL 401 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~-~~~~~~~~L~ 401 (533)
.+||++.. ++.++|- +..+|+ .-|++ ++++|+.+ ..++++-..+|....+. ++..-..||.
T Consensus 5 i~iVLVep~~~gNIG~---vARaMK-NfGl~------eL~LV~Pr-------~~~~eeA~a~A~gA~dile~A~i~~tL~ 67 (242)
T COG0565 5 IRIVLVEPSHPGNIGS---VARAMK-NFGLS------ELRLVNPR-------AGLDEEARALAAGARDILENAKIVDTLE 67 (242)
T ss_pred cEEEEEcCCCCccHHH---HHHHHH-hCCcc------eEEEECCC-------CCCCHHHHHHhccchhhhccCeeecCHH
Confidence 67777764 5666765 346677 68996 58888763 33566555555543221 1112357999
Q ss_pred HHhcccCCcEEEEeccCCC
Q 009519 402 EVVRKVKPHVLLGLSGVGG 420 (533)
Q Consensus 402 e~V~~vkptvLIG~S~~~g 420 (533)
|||.. .+.+||+|+...
T Consensus 68 eAl~d--~~~v~aTtar~r 84 (242)
T COG0565 68 EALAD--CDLVVATTARSR 84 (242)
T ss_pred HHhcC--CCEEEEeccccC
Confidence 99998 899999997543
No 439
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=50.63 E-value=15 Score=44.52 Aligned_cols=32 Identities=25% Similarity=0.382 Sum_probs=26.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||+|+|||.||+..|..|.+. |. ++.++|+.
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~-----G~-------~VtV~E~~ 462 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKY-----GV-------DVTVYEAL 462 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-----CC-------cEEEEecC
Confidence 7999999999999999988764 43 57778875
No 440
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=50.49 E-value=13 Score=39.13 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=26.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..|+|+|||.||+..|-.|... |+ ++.++++.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~-----G~-------~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARA-----GL-------DVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-----CC-------cEEEEccC
Confidence 6799999999999999888764 54 57777776
No 441
>PRK14694 putative mercuric reductase; Provisional
Probab=50.46 E-value=15 Score=39.79 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=26.7
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-.++|+|||+||+..|..+.+. | .++.++|+.
T Consensus 7 ~dviVIGaG~aG~~aA~~l~~~-----g-------~~v~lie~~ 38 (468)
T PRK14694 7 LHIAVIGSGGSAMAAALKATER-----G-------ARVTLIERG 38 (468)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-----C-------CcEEEEEcc
Confidence 5699999999999999988764 4 378899975
No 442
>PRK10015 oxidoreductase; Provisional
Probab=50.31 E-value=13 Score=40.19 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=25.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
-.|+|+|||.||...|..+.+ .|+ ++.++|+.-
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~-----~G~-------~VlliEr~~ 38 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMAR-----AGL-------DVLVIERGD 38 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHh-----CCC-------eEEEEecCC
Confidence 469999999999999988754 465 577777653
No 443
>PRK06126 hypothetical protein; Provisional
Probab=50.25 E-value=15 Score=40.45 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=26.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
.+|+|+|||.+|+..|-.|.+ .|+ ++.++|+.-
T Consensus 8 ~~VlIVGaGpaGL~~Al~La~-----~G~-------~v~viEr~~ 40 (545)
T PRK06126 8 TPVLIVGGGPVGLALALDLGR-----RGV-------DSILVERKD 40 (545)
T ss_pred CCEEEECCCHHHHHHHHHHHH-----CCC-------cEEEEeCCC
Confidence 689999999999999988765 455 577777653
No 444
>PTZ00188 adrenodoxin reductase; Provisional
Probab=50.23 E-value=19 Score=40.62 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=26.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||+|+|||.||+..|..++.. .|. ++-++|+.
T Consensus 40 krVAIVGaGPAGlyaA~~Ll~~----~g~-------~VtlfEk~ 72 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKH----ERV-------KVDIFEKL 72 (506)
T ss_pred CEEEEECCcHHHHHHHHHHHHh----cCC-------eEEEEecC
Confidence 7999999999999999977642 243 57788875
No 445
>PRK06199 ornithine cyclodeaminase; Validated
Probab=50.11 E-value=45 Score=36.05 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=52.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.++.|+|+|.-+....+.++... ..+ ++|+++|+. . +....+...+.+.-..+.......+.+|+
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~---~~i------~~V~v~~r~----~--~~a~~f~~~~~~~~~~~~~v~~~~s~~ea 220 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVC---PGI------DTIKIKGRG----Q--KSLDSFATWVAETYPQITNVEVVDSIEEV 220 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhc---CCc------cEEEEECCC----H--HHHHHHHHHHHHhcCCCceEEEeCCHHHH
Confidence 68999999998888777766642 122 578888763 1 11222222232210000001124789999
Q ss_pred hcccCCcEEEEecc-C------CCCCCHHHHH
Q 009519 404 VRKVKPHVLLGLSG-V------GGVFNEEVLK 428 (533)
Q Consensus 404 V~~vkptvLIG~S~-~------~g~Fteevv~ 428 (533)
|+. +||++-+.+ . ..+|..++++
T Consensus 221 v~~--ADIVvtaT~s~~~~~s~~Pv~~~~~lk 250 (379)
T PRK06199 221 VRG--SDIVTYCNSGETGDPSTYPYVKREWVK 250 (379)
T ss_pred HcC--CCEEEEccCCCCCCCCcCcEecHHHcC
Confidence 988 999996542 1 2678888886
No 446
>PRK07190 hypothetical protein; Provisional
Probab=49.79 E-value=14 Score=40.72 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=25.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
..|+|+|||.+|+..|-.|.. .|+ ++.++|+.-
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar-----~Gi-------~V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQL-----CGL-------NTVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHH-----cCC-------CEEEEeCCC
Confidence 579999999999998876543 465 477777753
No 447
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=49.74 E-value=1.6e+02 Score=32.03 Aligned_cols=48 Identities=8% Similarity=-0.036 Sum_probs=33.0
Q ss_pred ccCChhhHHHHHhcCCCCCeeEEEEecCceeeccCCCCCCcccccchhhhh
Q 009519 153 SAKDKGEMMSMIYNWPAQQVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDV 203 (533)
Q Consensus 153 s~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~GKl~L 203 (533)
+..|...+.++|+.+ +++++++.-|+.+=-|=.+|....-|.++...-
T Consensus 169 ~~~d~~ei~~lL~~~---Gl~~~~~l~~~~~~el~~~~~A~~~i~~~~~~~ 216 (416)
T cd01980 169 FPADPVAIGSVLERM---GLAAVPVVPTREWRELYAAGDAAAVAALHPFYT 216 (416)
T ss_pred CCCCHHHHHHHHHHc---CCceeeEeCCCCHHHHhhcccCcEEEEeChhHH
Confidence 355777888888875 566766555666666666776677777776654
No 448
>PRK14852 hypothetical protein; Provisional
Probab=49.73 E-value=13 Score=45.01 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=33.1
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
++|+. .||+|+|+|..|..||..|+.+++ ++|.++|-+=+
T Consensus 328 ~kL~~---srVlVvGlGGlGs~ia~~LAraGV-----------G~I~L~D~D~V 367 (989)
T PRK14852 328 RRLLR---SRVAIAGLGGVGGIHLMTLARTGI-----------GNFNLADFDAY 367 (989)
T ss_pred HHHhc---CcEEEECCcHHHHHHHHHHHHcCC-----------CeEEEEcCCEe
Confidence 45666 999999999999999999987655 68999998633
No 449
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=49.38 E-value=95 Score=33.11 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=70.2
Q ss_pred HHHHHHHhccCceecc-CcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhh
Q 009519 279 FETLERYRKRFCMFND-DIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFA 357 (533)
Q Consensus 279 f~iL~ryr~~~~~FnD-DiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA 357 (533)
.+.+.+| ..+||.|- |-.-=-+=+|+=++.-.+..|++++. .||+++|-+.- ++++-++.++. +-|+
T Consensus 115 ~~~~a~~-~~vPVINa~~~~~HPtQaL~Dl~Ti~e~~g~~l~g---l~ia~vGD~~~--~v~~Sl~~~~~-~~g~----- 182 (334)
T PRK01713 115 VNELAEY-AGVPVFNGLTDEFHPTQMLADVLTMIENCDKPLSE---ISYVYIGDARN--NMGNSLLLIGA-KLGM----- 182 (334)
T ss_pred HHHHHHh-CCCCEEECCCCCCChHHHHHHHHHHHHHcCCCcCC---cEEEEECCCcc--CHHHHHHHHHH-HcCC-----
Confidence 3334444 35899983 22222344566777766666767888 99999998753 48887777776 5676
Q ss_pred cCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHHhcccCCcEEEEe
Q 009519 358 RNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEVVRKVKPHVLLGL 415 (533)
Q Consensus 358 ~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~ 415 (533)
+|.++-.+++.-.+ ++-+.-+.+++.... ......++.+++++ +||+.-.
T Consensus 183 --~v~~~~P~~~~p~~--~~~~~~~~~~~~~g~--~~~~~~d~~~a~~~--aDvVyt~ 232 (334)
T PRK01713 183 --DVRICAPKALLPEA--SLVEMCEKFAKESGA--RITVTDDIDKAVKG--VDFVHTD 232 (334)
T ss_pred --EEEEECCchhcCCH--HHHHHHHHHHHHcCC--eEEEEcCHHHHhCC--CCEEEEc
Confidence 68888777763221 111111233332110 00123679999999 9999864
No 450
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.20 E-value=16 Score=39.20 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=20.2
Q ss_pred CceEEEeCchhHHHHHHHHHHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
..+++|.|+|..|.++|+.|.+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~ 27 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKL 27 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC
Confidence 38999999999999999988764
No 451
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=49.18 E-value=13 Score=42.52 Aligned_cols=33 Identities=18% Similarity=0.342 Sum_probs=26.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..|+|+|||.||+..|-.|.+. .|+ ++.++|++
T Consensus 33 ~dVlIVGAGPaGL~lA~~Lar~----~Gi-------~v~IiE~~ 65 (634)
T PRK08294 33 VDVLIVGCGPAGLTLAAQLSAF----PDI-------TTRIVERK 65 (634)
T ss_pred CCEEEECCCHHHHHHHHHHhcC----CCC-------cEEEEEcC
Confidence 7899999999999999888762 254 47778876
No 452
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=49.17 E-value=66 Score=30.23 Aligned_cols=21 Identities=43% Similarity=0.627 Sum_probs=16.9
Q ss_pred CcEEEEeccCCCCCCHHHHHHhh
Q 009519 409 PHVLLGLSGVGGVFNEEVLKAMR 431 (533)
Q Consensus 409 ptvLIG~S~~~g~Fteevv~~Ma 431 (533)
-|++|++|.. | -|+++++.+.
T Consensus 102 ~Dv~I~iS~S-G-~t~~~i~~~~ 122 (177)
T cd05006 102 GDVLIGISTS-G-NSPNVLKALE 122 (177)
T ss_pred CCEEEEEeCC-C-CCHHHHHHHH
Confidence 6999999963 3 5889998884
No 453
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=49.09 E-value=39 Score=36.79 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=52.3
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChh-hhccccccCCc--CCccCCC
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPA-AAPFAKDPGDF--MGLREGA 398 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~-k~~~A~~~~~~--~~~~~~~ 398 (533)
..|++|+|-.....++++.|.+. |+. +.. +++... +.+.+. +...++...+. -...+..
T Consensus 300 gkrv~v~g~~~~~~~l~~~L~el-----G~~-------~~~-----v~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~d~~ 362 (429)
T cd03466 300 GRKAAIYGEPDFVVAITRFVLEN-----GMV-------PVL-----IATGSESKKLKEKLEEDLKEYVEKCVILDGADFF 362 (429)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHC-----CCE-------EEE-----EEeCCCChHHHHHHHHHHHhcCCceEEEeCCCHH
Confidence 48999999888889999888753 652 211 111111 111111 11111110100 0001335
Q ss_pred CHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC
Q 009519 399 SLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM 448 (533)
Q Consensus 399 ~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~ 448 (533)
.+++.++..+||++||-|- .+.+-+.| .-|.| ..+.|..
T Consensus 363 e~~~~l~~~~~dliiG~s~-----~~~~a~~~-----~ip~~-~~~~P~~ 401 (429)
T cd03466 363 DIESYAKELKIDVLIGNSY-----GRRIAEKL-----GIPLI-RIGFPIH 401 (429)
T ss_pred HHHHHHHhcCCCEEEECch-----hHHHHHHc-----CCCEE-EecCCce
Confidence 6888889999999999774 23444444 35653 4555653
No 454
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.07 E-value=15 Score=40.20 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=20.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
+||+|+|.|-.|.++|++|.+.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~ 30 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAH 30 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHc
Confidence 8999999999999999998864
No 455
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=48.97 E-value=19 Score=36.74 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=30.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHH--HcCCChhhhcCeEEEEeccCc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAAR--MAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~--~~Gls~~eA~~~i~lvD~~GL 369 (533)
.||+|+|+|.-|.-+++.|+.+++. .-|.+. . -+|.++|.+=+
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~--g-~~i~lvD~D~V 56 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPG--G-LAVTVYDDDTV 56 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCC--C-CEEEEECCCEE
Confidence 8999999999999999999986320 112110 0 17999998743
No 456
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=48.87 E-value=44 Score=33.79 Aligned_cols=95 Identities=22% Similarity=0.263 Sum_probs=53.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.++.|+|+|..|-|+|..+..+.. .+.+--|++ -+.+....+.+- + . -...+.+||
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~------------eV~igs~r~-----~~~~~a~a~~l~-~--~----i~~~~~~dA 57 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGH------------EVIIGSSRG-----PKALAAAAAALG-P--L----ITGGSNEDA 57 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCC------------eEEEecCCC-----hhHHHHHHHhhc-c--c----cccCChHHH
Confidence 378999999999999999987632 333322210 011111111110 0 0 123568888
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPT 447 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt 447 (533)
++. .||++ +. +|=-..+++++.... .-..-||.--+||.
T Consensus 58 ~~~--aDVVv-LA-VP~~a~~~v~~~l~~-~~~~KIvID~tnp~ 96 (211)
T COG2085 58 AAL--ADVVV-LA-VPFEAIPDVLAELRD-ALGGKIVIDATNPI 96 (211)
T ss_pred Hhc--CCEEE-Ee-ccHHHHHhHHHHHHH-HhCCeEEEecCCCc
Confidence 887 78876 43 354455667776643 22346777777774
No 457
>PRK08618 ornithine cyclodeaminase; Validated
Probab=48.75 E-value=55 Score=34.20 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=60.2
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.+++|+|+|..|..++..++.. .++ ++|.++|+. .++ .......+..... .. .....+++++
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~----~~~------~~v~v~~r~----~~~--a~~~~~~~~~~~~-~~-~~~~~~~~~~ 189 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAV----RDI------ERVRVYSRT----FEK--AYAFAQEIQSKFN-TE-IYVVNSADEA 189 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhc----CCc------cEEEEECCC----HHH--HHHHHHHHHHhcC-Cc-EEEeCCHHHH
Confidence 6899999999988877665542 244 578888773 221 1222222211100 00 0124678999
Q ss_pred hcccCCcEEEEeccCC-CCCCHHHHHHhhhcCCCCCeEEecCCCC-CcccCCHHHHhc
Q 009519 404 VRKVKPHVLLGLSGVG-GVFNEEVLKAMRESDSVKPAIFAMSNPT-MNAECTAADAFK 459 (533)
Q Consensus 404 V~~vkptvLIG~S~~~-g~Fteevv~~Ma~~~~erPIIFaLSNPt-~~aE~tpe~A~~ 459 (533)
++. .|++|-++..+ -.|+ ++++ +..-|.++--.+ .+.|+.++ .++
T Consensus 190 ~~~--aDiVi~aT~s~~p~i~-~~l~-------~G~hV~~iGs~~p~~~E~~~~-~~~ 236 (325)
T PRK08618 190 IEE--ADIIVTVTNAKTPVFS-EKLK-------KGVHINAVGSFMPDMQELPSE-AIA 236 (325)
T ss_pred Hhc--CCEEEEccCCCCcchH-HhcC-------CCcEEEecCCCCcccccCCHH-HHh
Confidence 987 89998665433 2344 4443 344566664333 36788884 443
No 458
>PLN02568 polyamine oxidase
Probab=48.74 E-value=19 Score=40.56 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.8
Q ss_pred ceEEEeCchhHHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAA 346 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~ 346 (533)
.+|+|+|||.||+..|..|.+..
T Consensus 6 ~~v~iiGaG~aGl~aa~~L~~~g 28 (539)
T PLN02568 6 PRIVIIGAGMAGLTAANKLYTSS 28 (539)
T ss_pred CcEEEECCCHHHHHHHHHHHhcc
Confidence 68999999999999999998753
No 459
>PRK13984 putative oxidoreductase; Provisional
Probab=48.60 E-value=17 Score=40.98 Aligned_cols=32 Identities=25% Similarity=0.459 Sum_probs=25.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+++|+|+|.||+..|..|.+. |. ++.++|+.
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~-----G~-------~v~vie~~ 315 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATM-----GY-------EVTVYESL 315 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEecC
Confidence 7899999999999999998764 43 56777654
No 460
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=48.19 E-value=17 Score=39.06 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=26.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-.++|+|||+||+..|..+.+. | .++.++|++
T Consensus 6 yDvvVIGaGpaG~~aA~~la~~-----G-------~~v~liE~~ 37 (461)
T PRK05249 6 YDLVVIGSGPAGEGAAMQAAKL-----G-------KRVAVIERY 37 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEecc
Confidence 5699999999999999888664 4 479999985
No 461
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=48.06 E-value=42 Score=35.95 Aligned_cols=32 Identities=31% Similarity=0.518 Sum_probs=26.3
Q ss_pred ceEEEeC-chhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~G-AGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.||.|+| +|..|-++|..+..+ |. .++++|++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~-----G~-------~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLS-----GY-------QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHC-----CC-------eEEEeCCC
Confidence 6899999 999999999998764 43 57888874
No 462
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=48.04 E-value=13 Score=43.14 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.+|+|+|||.||+..|-.|.+.
T Consensus 82 ~~VlIVGgGIaGLalAlaL~r~ 103 (668)
T PLN02927 82 SRVLVAGGGIGGLVFALAAKKK 103 (668)
T ss_pred CCEEEECCCHHHHHHHHHHHhc
Confidence 7999999999999999888764
No 463
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=47.98 E-value=16 Score=40.49 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.4
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.+|+|+|||.+|+..|..|.+.
T Consensus 11 ~dV~IVGaGp~Gl~lA~~L~~~ 32 (538)
T PRK06183 11 TDVVIVGAGPVGLTLANLLGQY 32 (538)
T ss_pred CCEEEECCCHHHHHHHHHHHHC
Confidence 6899999999999999888653
No 464
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=47.86 E-value=37 Score=36.51 Aligned_cols=89 Identities=8% Similarity=0.110 Sum_probs=45.9
Q ss_pred HHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccC
Q 009519 310 TVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPG 389 (533)
Q Consensus 310 Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~ 389 (533)
++......|.. .|++|+|.+.-..++++++.+ .|+. +..+-+. ....++....+..+ ....
T Consensus 277 ~l~~~~~~l~g---krv~i~~~~~~~~~la~~l~e-----lGm~-------v~~~~~~---~~~~~~~~~~~~~~-~~~~ 337 (410)
T cd01968 277 ELAPYRARLEG---KKAALYTGGVKSWSLVSALQD-----LGME-------VVATGTQ---KGTKEDYERIKELL-GEGT 337 (410)
T ss_pred HHHHHHHHhCC---CEEEEEcCCchHHHHHHHHHH-----CCCE-------EEEEecc---cCCHHHHHHHHHHh-CCCc
Confidence 33333444556 899999988888999987654 4663 3333221 11111111111111 0010
Q ss_pred CcCCccCCCCHHHHhcccCCcEEEEecc
Q 009519 390 DFMGLREGASLLEVVRKVKPHVLLGLSG 417 (533)
Q Consensus 390 ~~~~~~~~~~L~e~V~~vkptvLIG~S~ 417 (533)
.+-...+...+.+.++..+||++||-|.
T Consensus 338 ~v~~~~~~~e~~~~i~~~~pDl~ig~s~ 365 (410)
T cd01968 338 VIVDDANPRELKKLLKEKKADLLVAGGK 365 (410)
T ss_pred EEEeCCCHHHHHHHHhhcCCCEEEECCc
Confidence 1100011234678889999999999764
No 465
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=47.69 E-value=14 Score=44.75 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=33.1
Q ss_pred CCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 316 LSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 316 ~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
++|.+ .+|+|+|+|.-|.-||+.|+.+++ ++|.++|.+-
T Consensus 20 ~kL~~---s~VLIiG~gGLG~EiaKnL~laGV-----------g~iti~D~d~ 58 (1008)
T TIGR01408 20 QKMAK---SNVLISGMGGLGLEIAKNLVLAGV-----------KSVTLHDTEK 58 (1008)
T ss_pred HHHhh---CcEEEECCCHHHHHHHHHHHHcCC-----------CeEEEEeCCe
Confidence 34555 899999999999999999988755 6899999864
No 466
>PRK13748 putative mercuric reductase; Provisional
Probab=47.32 E-value=15 Score=40.53 Aligned_cols=32 Identities=25% Similarity=0.537 Sum_probs=27.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-.++|+|||+||+..|..+.++ | .++.++|++
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~-----G-------~~v~lie~~ 130 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQ-----G-------ARVTLIERG 130 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 6799999999999999888764 4 379999975
No 467
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=47.20 E-value=16 Score=44.34 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=27.7
Q ss_pred CceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
..||+|+|||.||+..|..|... |. ++.++|..
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~-----Gh-------~Vtv~E~~ 415 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRS-----GH-------NVTAIDGL 415 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEccc
Confidence 38999999999999999999763 43 68888874
No 468
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.18 E-value=24 Score=38.08 Aligned_cols=48 Identities=27% Similarity=0.359 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 304 LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
|+--+-|+|..+.++.+ |++|+|||+.|+.. +++.- .-|- ++|.++|-
T Consensus 155 LsV~~HAcr~~~vk~Gs----~vLV~GAGPIGl~t--~l~Ak---a~GA------~~VVi~d~ 202 (354)
T KOG0024|consen 155 LSVGVHACRRAGVKKGS----KVLVLGAGPIGLLT--GLVAK---AMGA------SDVVITDL 202 (354)
T ss_pred hhhhhhhhhhcCcccCC----eEEEECCcHHHHHH--HHHHH---HcCC------CcEEEeec
Confidence 66677899999999887 99999999987754 33221 1244 47888764
No 469
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=47.14 E-value=18 Score=39.67 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=24.6
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
+|||+|+|+||.-.|-.|...+. . . -+|.++.+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~-~-~-------~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGP-D-A-------LSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCT-C-S-------SEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCC-C-C-------cEEEEEecC
Confidence 69999999999999999888753 0 0 378888886
No 470
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=47.11 E-value=21 Score=39.01 Aligned_cols=95 Identities=19% Similarity=0.261 Sum_probs=60.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCC-CCCChh---hhccccccCCcCCccCCCC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKER-KNLDPA---AAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r-~~l~~~---k~~~A~~~~~~~~~~~~~~ 399 (533)
.+|+++|||-.|..+|..|++- |- .+|++.|+. .+. ..+... +.+...-+. .+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-----~d------~~V~iAdRs----~~~~~~i~~~~~~~v~~~~vD~-----~d~~a 61 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-----GD------GEVTIADRS----KEKCARIAELIGGKVEALQVDA-----ADVDA 61 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-----CC------ceEEEEeCC----HHHHHHHHhhccccceeEEecc-----cChHH
Confidence 4899999999999999998863 21 489998883 111 011111 222222111 23457
Q ss_pred HHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCC
Q 009519 400 LLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSN 445 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSN 445 (533)
|.+++++ .|++|-+- |+-++..++++-.+ +.-+. .=.||
T Consensus 62 l~~li~~--~d~VIn~~--p~~~~~~i~ka~i~--~gv~y-vDts~ 100 (389)
T COG1748 62 LVALIKD--FDLVINAA--PPFVDLTILKACIK--TGVDY-VDTSY 100 (389)
T ss_pred HHHHHhc--CCEEEEeC--CchhhHHHHHHHHH--hCCCE-EEccc
Confidence 9999999 69988765 78888888887654 33333 33555
No 471
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=47.01 E-value=16 Score=42.64 Aligned_cols=104 Identities=14% Similarity=0.060 Sum_probs=59.5
Q ss_pred cccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecCCCCC---ccc-----CCHHHHhcccCCcEEEecCCCCcce
Q 009519 405 RKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMSNPTM---NAE-----CTAADAFKHAGENIVFASGSPFENV 476 (533)
Q Consensus 405 ~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLSNPt~---~aE-----~tpe~A~~wt~Grai~AtGSPf~pv 476 (533)
+.++|+++|..+| ..+--.++-..+ .+-+|=|.+=.-||.+ +.| -|.+++++..- . |+..-=..||
T Consensus 416 ~~~~~~~ilasnT-S~l~i~~ia~~~--~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~--~-~~~~lgk~pv 489 (714)
T TIGR02437 416 QHVREDAILASNT-STISISLLAKAL--KRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVV--A-YASKMGKTPI 489 (714)
T ss_pred hhCCCCcEEEECC-CCCCHHHHHhhc--CCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHH--H-HHHHcCCEEE
Confidence 4568999998877 344444454444 1455558888899974 333 34444433221 0 1111113344
Q ss_pred ecCCCeeeecccccceeechhhhHHHHHhCCcccCHHHHHHHH
Q 009519 477 DLGNGKIGHVNQANNMYLFPGIGLGTLLSGARFITDGMLQQAA 519 (533)
Q Consensus 477 ~~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA 519 (533)
..+ +.||-.=|-..+|-+--+..+...- ++.+-+-.|.
T Consensus 490 ~v~----d~pGfi~NRl~~~~~~ea~~l~~eG-~~~~~ID~a~ 527 (714)
T TIGR02437 490 VVN----DCPGFFVNRVLFPYFGGFSKLLRDG-ADFVRIDKVM 527 (714)
T ss_pred EeC----CcccchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHH
Confidence 441 5688888888888776666555443 5666666654
No 472
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.95 E-value=16 Score=40.42 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=20.7
Q ss_pred CceEEEeCchhHHHHHHHHHHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
..+++|+|||+||+..|+-|.+.
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~ 28 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE 28 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC
Confidence 47999999999999999988864
No 473
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=46.91 E-value=1.6e+02 Score=31.95 Aligned_cols=156 Identities=13% Similarity=0.194 Sum_probs=87.3
Q ss_pred cccchHHHHHHHhhhccCCC------------ccccc-----cCChhhHHHHHhcCCCCCeeEEEEe-cCceeeccCCCC
Q 009519 129 YTPTVGLVCQNYSGLFRRPR------------GMYFS-----AKDKGEMMSMIYNWPAQQVDMIVLT-DGSRILGLGDLG 190 (533)
Q Consensus 129 YTPtVg~ac~~~s~~~r~pr------------Glyis-----~~d~~~i~~~l~n~p~~~v~viVVT-DG~rILGLGDlG 190 (533)
|+.+...++..+-..+..++ |.|.. ..|-..+..+|+.. ++++..+. .|+.+=-+-..+
T Consensus 136 ~~~G~~~a~~al~~~~~~~~~~~~~~~~VNliG~~~~~~~~~~~d~~ei~~lL~~~---Gi~v~~~~~~~~~~~ei~~~~ 212 (426)
T cd01972 136 WRSGFDAAFHGILRHLVPPQDPTKQEDSVNIIGLWGGPERTEQEDVDEFKRLLNEL---GLRVNAIIAGGCSVEELERAS 212 (426)
T ss_pred HhHHHHHHHHHHHHHhcCCCCCCCCCCCEEEEccCCCccccccccHHHHHHHHHHc---CCeEEEEeCCCCCHHHHHhcc
Confidence 44555556655555553321 55533 25566788888764 56765554 457777777777
Q ss_pred CCcccccchh-hhhHh-----hhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCC
Q 009519 191 VQGIGIPIGK-LDVYV-----AAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWP 264 (533)
Q Consensus 191 ~~Gm~I~~GK-l~LY~-----a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P 264 (533)
-...-|.++. ..++. .==||. .+.+-+-.|- +-.++|++.+.+.+.
T Consensus 213 ~A~lniv~~~~~g~~~a~~Lee~~GiP---~~~~~~P~G~-------------------------~~T~~~l~~ia~~~g 264 (426)
T cd01972 213 EAAANVTLCLDLGYYLGAALEQRFGVP---EIKAPQPYGI-------------------------EATDKWLREIAKVLG 264 (426)
T ss_pred cCCEEEEEChhHHHHHHHHHHHHhCCC---eEecCCccCH-------------------------HHHHHHHHHHHHHhC
Confidence 6666666553 22222 112453 2211111221 347888888877653
Q ss_pred CceeeeecCCCchHHHHHHHHhccCceeccCcchhHHHHHHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHH
Q 009519 265 KAIVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVALAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQ 344 (533)
Q Consensus 265 ~~~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~ 344 (533)
+ | ..+-+.+++.+.++ ..++.-....|+. .|++++|.+.-..++++.+.+
T Consensus 265 ---~--~----~~~e~~i~~e~~~~------------------~~~l~~~~~~l~G---k~~~i~~~~~~~~~~~~~l~e 314 (426)
T cd01972 265 ---M--E----AEAEAVIEREHERV------------------APEIEELRKALKG---KKAIVETGAAYGHLLIAVLRE 314 (426)
T ss_pred ---C--c----HHHHHHHHHHHHHH------------------HHHHHHHHHHhCC---CEEEEEeCCccHHHHHHHHHH
Confidence 1 1 13555666655442 2333333344555 899999998888888888766
Q ss_pred H
Q 009519 345 A 345 (533)
Q Consensus 345 ~ 345 (533)
.
T Consensus 315 l 315 (426)
T cd01972 315 L 315 (426)
T ss_pred c
Confidence 4
No 474
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=46.89 E-value=14 Score=38.58 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=24.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
.+|+|+|||.+|+..|-.|.+ .|+ ++.++|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~-----~G~-------~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ-----KGI-------KTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc-----CCC-------eEEEecCC
Confidence 469999999999999987754 465 45666653
No 475
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=46.65 E-value=19 Score=38.18 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=25.8
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
.|+|+|||-||+..|..|.++ |. .+.++|+-+
T Consensus 3 siaIVGaGiAGl~aA~~L~~a-----G~-------~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA-----GR-------EVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc-----Cc-------EEEEEEcCC
Confidence 589999999999999988765 54 477788643
No 476
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=46.62 E-value=37 Score=40.87 Aligned_cols=189 Identities=11% Similarity=0.165 Sum_probs=96.8
Q ss_pred CChhhHHHHHhcCCCCCeeEE-EEecCceeeccCCCCCCcccccchhhh-hHh------hhcCCCCCceecEEeeccCCc
Q 009519 155 KDKGEMMSMIYNWPAQQVDMI-VLTDGSRILGLGDLGVQGIGIPIGKLD-VYV------AAAGINPQRILPVMLDVGTNN 226 (533)
Q Consensus 155 ~d~~~i~~~l~n~p~~~v~vi-VVTDG~rILGLGDlG~~Gm~I~~GKl~-LY~------a~aGI~P~~~lPI~LDvGTnN 226 (533)
.|-..+.++|... +++++ ++|.++.+=-+-+.+-...-|.++.-. .+. .+ ||. .+-
T Consensus 197 gd~~elk~lL~~~---Gi~v~~~~~g~~t~eei~~~~~A~lniv~~~~~~~~~A~~Le~~f-GiP---~~~--------- 260 (917)
T PRK14477 197 GDLWGMLPLFDRL---GIRVLSCISGDAKFEELRYAHRAKLNVIICSKSLTNLARKMEKRY-GIP---YLE--------- 260 (917)
T ss_pred chHHHHHHHHHHc---CCeEEEEcCCCCCHHHHHhcccCCEEEEEcHHHHHHHHHHHHHHh-CCC---EEe---------
Confidence 3444566666654 45554 556666666666666655555553222 222 22 443 110
Q ss_pred hhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCc--eeeeecCCCchHHHHHHHHhccCceeccCcchhHHHHH
Q 009519 227 QKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA--IVQFEDFQMKWAFETLERYRKRFCMFNDDIQGTAGVAL 304 (533)
Q Consensus 227 ~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~--~I~~EDf~~~~af~iL~ryr~~~~~FnDDiQGTaaV~L 304 (533)
. .++|+ +-.|+|+..+.+.+-.- .+.- +.-...+-+.+++.+.+
T Consensus 261 -----~-~p~Gi-----------~~T~~~L~~ia~~~g~~~~~~~~-~~~~~~~e~~i~~e~~~---------------- 306 (917)
T PRK14477 261 -----E-SFYGM-----------TDTAKALRDIARELDDAGGGLEK-RVLQDRVEKLIAEEEAK---------------- 306 (917)
T ss_pred -----c-CccCH-----------HHHHHHHHHHHHHhCCcccCCch-hhhHHHHHHHHHHHHHH----------------
Confidence 0 12332 34788888888777321 1100 00123455566666554
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhh--
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAA-- 382 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~-- 382 (533)
+.-++......|+. .|++|+|.+.-..+++++|.+. |+. +..+-.+ ..+..+..+
T Consensus 307 --~~~~l~~~~~~L~G---Krv~i~~g~~~~~~la~~l~el-----Gme-------vv~~g~~------~~~~~d~~~~~ 363 (917)
T PRK14477 307 --CRAALAPYRARLEG---KRVVLFTGGVKTWSMVNALREL-----GVE-------VLAAGTQ------NSTLEDFARMK 363 (917)
T ss_pred --HHHHHHHHHHHccC---CEEEEECCCchHHHHHHHHHHC-----CCE-------EEEEcCC------CCCHHHHHHHH
Confidence 34444444556666 9999999988888888887654 552 2221111 011111111
Q ss_pred ccccccCCcCCccCCCCHHHHhcccCCcEEEEec
Q 009519 383 PFAKDPGDFMGLREGASLLEVVRKVKPHVLLGLS 416 (533)
Q Consensus 383 ~~A~~~~~~~~~~~~~~L~e~V~~vkptvLIG~S 416 (533)
.+..+....-...+...|++.++..|||.+||-|
T Consensus 364 ~~~~~~~~vi~~~d~~el~~~i~~~~pDLlig~~ 397 (917)
T PRK14477 364 ALMHKDAHIIEDTSTAGLLRVMREKMPDLIVAGG 397 (917)
T ss_pred HhcCCCCEEEECCCHHHHHHHHHhcCCCEEEecC
Confidence 1111111110001234588899999999999965
No 477
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=46.47 E-value=24 Score=38.09 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHH
Q 009519 307 LLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 307 li~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
+..++......|.. .|++|+|-+.-..++++.|.+.
T Consensus 261 ~~~~l~~~~~~l~G---krv~i~gd~~~~~~l~~~L~el 296 (407)
T TIGR01279 261 AWRALEPHTQLLRG---KKIFFFGDNLLELPLARFLKRC 296 (407)
T ss_pred HHHHHHHHHHhcCC---CEEEEECCchHHHHHHHHHHHC
Confidence 34455555555666 9999999999999999998874
No 478
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=46.38 E-value=58 Score=36.02 Aligned_cols=26 Identities=15% Similarity=0.404 Sum_probs=21.5
Q ss_pred CCCCCCCceEEEeCchhHHHHHHHHHHHH
Q 009519 317 SLTDFADQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 317 ~l~dl~~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.|.. .|++|+|-++-.+|+++.|.+.
T Consensus 309 ~l~G---krvai~~~~~~~~~l~~~l~el 334 (461)
T TIGR02931 309 FLAD---KRVAIYGNPDLVIGLAEFCLDL 334 (461)
T ss_pred HhCC---CeEEEEeCHHHHHHHHHHHHHC
Confidence 3455 8999999999999999998753
No 479
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=46.32 E-value=53 Score=28.17 Aligned_cols=84 Identities=20% Similarity=0.267 Sum_probs=47.9
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV 403 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~ 403 (533)
.||.|+|+|..|.....-+.... .+. +-+.++|++. +.-+.+++... .+...|+.|.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~---~~~------~v~~v~d~~~----------~~~~~~~~~~~----~~~~~~~~~l 57 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS---PDF------EVVAVCDPDP----------ERAEAFAEKYG----IPVYTDLEEL 57 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT---TTE------EEEEEECSSH----------HHHHHHHHHTT----SEEESSHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcC---CCc------EEEEEEeCCH----------HHHHHHHHHhc----ccchhHHHHH
Confidence 38999999999776655544420 121 2234555521 11112222211 1235789999
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhh
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRE 432 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~ 432 (533)
++.-++|+++ +++ +.....++++...+
T Consensus 58 l~~~~~D~V~-I~t-p~~~h~~~~~~~l~ 84 (120)
T PF01408_consen 58 LADEDVDAVI-IAT-PPSSHAEIAKKALE 84 (120)
T ss_dssp HHHTTESEEE-EES-SGGGHHHHHHHHHH
T ss_pred HHhhcCCEEE-Eec-CCcchHHHHHHHHH
Confidence 9987899887 554 45566666666544
No 480
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=46.07 E-value=20 Score=39.07 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=26.3
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-.|+|+|+|+||+..|..+.+. | +++.++|++
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~-----G-------~~V~liE~~ 35 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQL-----G-------LKVACVEGR 35 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEecC
Confidence 4699999999999999887653 4 379999974
No 481
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=46.06 E-value=16 Score=36.53 Aligned_cols=34 Identities=26% Similarity=0.444 Sum_probs=24.1
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi 370 (533)
++|+|+|+||.-+|..|.+. | ..+|.++.+-+..
T Consensus 3 ~iIVGsG~~G~v~A~rLs~~-----~------~~~VlvlEaG~~~ 36 (296)
T PF00732_consen 3 YIIVGSGAGGSVVASRLSEA-----G------NKKVLVLEAGPRY 36 (296)
T ss_dssp EEEES-SHHHHHHHHHHTTS-----T------TS-EEEEESSBSC
T ss_pred EEEECcCHHHHHHHHHHhhC-----C------CCcEEEEEccccC
Confidence 79999999999999988642 2 1478888776543
No 482
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=46.05 E-value=1.3e+02 Score=32.95 Aligned_cols=136 Identities=18% Similarity=0.179 Sum_probs=75.7
Q ss_pred ceEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcC--eEEEE--eccCccccCC-CCCChhhhccccccCCcCCccCC
Q 009519 324 QKIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARN--KFFLL--DKDGLITKER-KNLDPAAAPFAKDPGDFMGLREG 397 (533)
Q Consensus 324 ~riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~--~i~lv--D~~GLi~~~r-~~l~~~k~~~A~~~~~~~~~~~~ 397 (533)
-||.|+|| |..|..+|-.|+.. |+-.+ -+ -+.|+ |.+-=...+. -+|.+...++... . .-.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~-----~l~~~--~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~---v---~i~ 111 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG-----EVFGQ--DQPIALKLLGSERSKEALEGVAMELEDSLYPLLRE---V---SIG 111 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-----cccCC--CCceEEEEeccCccchhhhHHHHHHHHhhhhhcCc---e---EEe
Confidence 69999999 99999999987753 33110 01 34455 4321111110 1232222122211 0 001
Q ss_pred CCHHHHhcccCCcEEEEeccCC---CC-----------CCHHHHHHhhhcCCCCCeEEecCCCCCcccCCHHHHhccc--
Q 009519 398 ASLLEVVRKVKPHVLLGLSGVG---GV-----------FNEEVLKAMRESDSVKPAIFAMSNPTMNAECTAADAFKHA-- 461 (533)
Q Consensus 398 ~~L~e~V~~vkptvLIG~S~~~---g~-----------Fteevv~~Ma~~~~erPIIFaLSNPt~~aE~tpe~A~~wt-- 461 (533)
.+-.+.+++ .|++|=+.+.+ |- +=+++.+.+.+..++..||+--|||.. +...-+++++
T Consensus 112 ~~~y~~~kd--aDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvD---v~t~v~~k~sg~ 186 (387)
T TIGR01757 112 IDPYEVFED--ADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCN---TNALIAMKNAPN 186 (387)
T ss_pred cCCHHHhCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHH---HHHHHHHHHcCC
Confidence 233566777 89988555443 31 124556666432338999999999985 5666666665
Q ss_pred CCcEEEecCCCCccee
Q 009519 462 GENIVFASGSPFENVD 477 (533)
Q Consensus 462 ~Grai~AtGSPf~pv~ 477 (533)
.-+-+|.||+-.+...
T Consensus 187 ~~~rviG~gT~LDsaR 202 (387)
T TIGR01757 187 IPRKNFHALTRLDENR 202 (387)
T ss_pred CcccEEEecchhHHHH
Confidence 2356888887666554
No 483
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=45.61 E-value=82 Score=29.28 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=17.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAA 346 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~ 346 (533)
.||.|+|.|+.+. +|..+...+
T Consensus 12 ~rI~~~G~G~S~~-~A~~~a~~~ 33 (154)
T TIGR00441 12 GKVLICGNGGSAC-DAQHFAAEL 33 (154)
T ss_pred CEEEEEeCcHHHH-HHHHHHHHh
Confidence 8999999999875 676665544
No 484
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.55 E-value=21 Score=38.48 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=19.9
Q ss_pred CceEEEeCchhHHHHHHHHHHHH
Q 009519 323 DQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 323 ~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
..+|+|+|+|.+|+++|+.|.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~ 27 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKN 27 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC
Confidence 38999999999999998887754
No 485
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=45.24 E-value=43 Score=35.74 Aligned_cols=44 Identities=14% Similarity=0.046 Sum_probs=27.4
Q ss_pred CCHHHHhcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEecC
Q 009519 398 ASLLEVVRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFAMS 444 (533)
Q Consensus 398 ~~L~e~V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFaLS 444 (533)
.+..++++. +|++| ++...+...+++++.++....+..||+-.|
T Consensus 73 sd~~eaa~~--ADvVI-laVP~~~~v~~Vl~~L~~~L~~g~IVId~S 116 (342)
T PRK12557 73 SDDAEAAKH--GEIHI-LFTPFGKKTVEIAKNILPHLPENAVICNTC 116 (342)
T ss_pred CCHHHHHhC--CCEEE-EECCCcHHHHHHHHHHHhhCCCCCEEEEec
Confidence 467788876 78877 454334447888887765334445655444
No 486
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=45.21 E-value=30 Score=29.70 Aligned_cols=30 Identities=23% Similarity=0.544 Sum_probs=23.8
Q ss_pred EEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 326 IVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 326 iv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
|||+|.|..|..+++.|.+. + .++.++|++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-----~-------~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-----G-------IDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-----T-------SEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhC-----C-------CEEEEEECC
Confidence 78999999999999988762 1 479999885
No 487
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=45.21 E-value=12 Score=39.34 Aligned_cols=76 Identities=18% Similarity=0.359 Sum_probs=39.2
Q ss_pred EEEeC-chhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccc--cCCc--------CCc
Q 009519 326 IVVVG-AGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKD--PGDF--------MGL 394 (533)
Q Consensus 326 iv~~G-AGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~--~~~~--------~~~ 394 (533)
|+|-| +||.|-.++++|++.-- ++|+++|++-- .|-..++++.+. ...+ ...
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-----------~~lil~d~~E~------~l~~l~~~l~~~~~~~~v~~~~~~vigDv 63 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-----------KKLILFDRDEN------KLYELERELRSRFPDPKVRFEIVPVIGDV 63 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB------------SEEEEEES-HH------HHHHHHHHCHHHC--TTCEEEEE--CTSC
T ss_pred CEEEccccHHHHHHHHHHHhcCC-----------CeEEEeCCChh------HHHHHHHHHhhcccccCcccccCceeecc
Confidence 34555 58999999998887522 68999998511 222333333210 0000 001
Q ss_pred cCCCCHHHHhcccCCcEEEEeccC
Q 009519 395 REGASLLEVVRKVKPHVLLGLSGV 418 (533)
Q Consensus 395 ~~~~~L~e~V~~vkptvLIG~S~~ 418 (533)
.+...|..+++..+||+++=+.+.
T Consensus 64 rd~~~l~~~~~~~~pdiVfHaAA~ 87 (293)
T PF02719_consen 64 RDKERLNRIFEEYKPDIVFHAAAL 87 (293)
T ss_dssp CHHHHHHHHTT--T-SEEEE----
T ss_pred cCHHHHHHHHhhcCCCEEEEChhc
Confidence 123458889998899999987764
No 488
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=45.18 E-value=19 Score=35.84 Aligned_cols=101 Identities=22% Similarity=0.311 Sum_probs=55.1
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChhhhccccccCCcCCccCCCCHHHH-
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPAAAPFAKDPGDFMGLREGASLLEV- 403 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~k~~~A~~~~~~~~~~~~~~L~e~- 403 (533)
+|+|+|+|..|..+|+.|.+. | .++.++|.+--.... .+.+...-.+-..+. .+...|+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-----g-------~~Vv~Id~d~~~~~~--~~~~~~~~~~v~gd~----t~~~~L~~ag 63 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-----G-------HNVVLIDRDEERVEE--FLADELDTHVVIGDA----TDEDVLEEAG 63 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-----C-------CceEEEEcCHHHHHH--HhhhhcceEEEEecC----CCHHHHHhcC
Confidence 799999999999999999864 3 378888875222111 011000011111100 123457777
Q ss_pred hcccCCcEEEEeccCCCCCCHHHHHHhhhcCCCCCeEEe-cCCCC
Q 009519 404 VRKVKPHVLLGLSGVGGVFNEEVLKAMRESDSVKPAIFA-MSNPT 447 (533)
Q Consensus 404 V~~vkptvLIG~S~~~g~Fteevv~~Ma~~~~erPIIFa-LSNPt 447 (533)
++. .|++|-+++ .--.--++-.||.+...-|-|.+ ..||.
T Consensus 64 i~~--aD~vva~t~--~d~~N~i~~~la~~~~gv~~viar~~~~~ 104 (225)
T COG0569 64 IDD--ADAVVAATG--NDEVNSVLALLALKEFGVPRVIARARNPE 104 (225)
T ss_pred CCc--CCEEEEeeC--CCHHHHHHHHHHHHhcCCCcEEEEecCHH
Confidence 666 899998775 22333444455433223444443 45553
No 489
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=45.15 E-value=21 Score=34.99 Aligned_cols=56 Identities=23% Similarity=0.404 Sum_probs=39.7
Q ss_pred hHhhhcCCCCCceecEEeeccCCchhcccCcccccccccCCChhhhhHhHHHHHHHHHHhCCCc-eeeeecCCCchH
Q 009519 203 VYVAAAGINPQRILPVMLDVGTNNQKLLEDRLYLGLRQPRLEGEEYLSIVDEFMEAVHARWPKA-IVQFEDFQMKWA 278 (533)
Q Consensus 203 LY~a~aGI~P~~~lPI~LDvGTnN~~Ll~DP~YlG~r~~R~~g~eY~~~vdefv~av~~~~P~~-~I~~EDf~~~~a 278 (533)
+-...+++++ .++ .||+|.| .+.++|.+-++.||+.+++..|.+ +|-.|.+..++.
T Consensus 51 ~a~~ia~~~a-~~~--~ld~~~N-----------------~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~ 107 (178)
T PF14606_consen 51 VADLIAEIDA-DLI--VLDCGPN-----------------MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAG 107 (178)
T ss_dssp HHHHHHHS---SEE--EEEESHH-----------------CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTT
T ss_pred HHHHHhcCCC-CEE--EEEeecC-----------------CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcccc
Confidence 3455678875 444 8999988 466899999999999999999998 888888876654
No 490
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.96 E-value=21 Score=38.57 Aligned_cols=25 Identities=32% Similarity=0.610 Sum_probs=21.0
Q ss_pred CCCceEEEeCchhHHHHHHHHHHHH
Q 009519 321 FADQKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 321 l~~~riv~~GAGsAg~GiA~ll~~~ 345 (533)
|+..||.|+|.|-.|+++|++|...
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~ 31 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAG 31 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHC
Confidence 4448999999999999998888754
No 491
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=44.89 E-value=46 Score=34.44 Aligned_cols=41 Identities=24% Similarity=0.432 Sum_probs=31.1
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCcc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLI 370 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi 370 (533)
++|+|+|+|.+|+-+|..|..... +.|. +.+|.+++...++
T Consensus 146 ~~vvVvG~G~~g~E~A~~l~~~~~-~~g~-----~~~V~li~~~~~l 186 (364)
T TIGR03169 146 KRLAVVGGGAAGVEIALALRRRLP-KRGL-----RGQVTLIAGASLL 186 (364)
T ss_pred ceEEEECCCHHHHHHHHHHHHHHH-hcCC-----CceEEEEeCCccc
Confidence 699999999999999999988665 4453 2478888544443
No 492
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=44.80 E-value=21 Score=37.98 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=20.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHH
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~ 345 (533)
.+|+|+|||-||+..|..|.+.
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~ 24 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKE 24 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhc
Confidence 6899999999999999988764
No 493
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=44.39 E-value=83 Score=33.29 Aligned_cols=37 Identities=19% Similarity=0.038 Sum_probs=26.8
Q ss_pred CHHHHhcccCCcE-EEEeccCCCCCCHHHHHHhhhcCCCCCeEE
Q 009519 399 SLLEVVRKVKPHV-LLGLSGVGGVFNEEVLKAMRESDSVKPAIF 441 (533)
Q Consensus 399 ~L~e~V~~vkptv-LIG~S~~~g~Fteevv~~Ma~~~~erPIIF 441 (533)
.|.+.... .|+ ++|-|-..+ |..-++++|+ +..|||+
T Consensus 312 el~~~y~~--aDi~~v~~S~~e~-~g~~~lEAma---~G~PVI~ 349 (425)
T PRK05749 312 ELGLLYAI--ADIAFVGGSLVKR-GGHNPLEPAA---FGVPVIS 349 (425)
T ss_pred HHHHHHHh--CCEEEECCCcCCC-CCCCHHHHHH---hCCCEEE
Confidence 46677766 888 777664333 5556899996 5999997
No 494
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=44.20 E-value=79 Score=31.14 Aligned_cols=78 Identities=18% Similarity=0.309 Sum_probs=43.3
Q ss_pred eEEEeCc-hhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCccccCCCCCChh----hhccccccCCcCCccCCCC
Q 009519 325 KIVVVGA-GSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGLITKERKNLDPA----AAPFAKDPGDFMGLREGAS 399 (533)
Q Consensus 325 riv~~GA-GsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GLi~~~r~~l~~~----k~~~A~~~~~~~~~~~~~~ 399 (533)
||+|.|| |..|..+++.|+.. |- .-+++.+|+...- ...+.+... ...+..- + ..+..+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~-----~~-----~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--D---l~~~~~ 64 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNE-----HP-----DAEVIVLDKLTYA-GNLENLADLEDNPRYRFVKG--D---IGDREL 64 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHh-----CC-----CCEEEEecCCCcc-hhhhhhhhhccCCCcEEEEc--C---CcCHHH
Confidence 5888997 88888888877653 21 1267777752110 001111111 0111110 0 112346
Q ss_pred HHHHhcccCCcEEEEeccC
Q 009519 400 LLEVVRKVKPHVLLGLSGV 418 (533)
Q Consensus 400 L~e~V~~vkptvLIG~S~~ 418 (533)
+.++++..++|++|=+++.
T Consensus 65 ~~~~~~~~~~d~vi~~a~~ 83 (317)
T TIGR01181 65 VSRLFTEHQPDAVVHFAAE 83 (317)
T ss_pred HHHHHhhcCCCEEEEcccc
Confidence 8888888889999988764
No 495
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=44.10 E-value=45 Score=34.25 Aligned_cols=49 Identities=31% Similarity=0.438 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 304 LAGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 304 LAgli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
.+..+.|+...+..... ++++|.|+|+.|..++.+... .|. ++++.+++
T Consensus 162 ~~ta~~al~~~~~~~~g---~~vlI~g~g~vG~~~~~lak~-----~G~------~~v~~~~~ 210 (361)
T cd08231 162 LATVLAALDRAGPVGAG---DTVVVQGAGPLGLYAVAAAKL-----AGA------RRVIVIDG 210 (361)
T ss_pred HHHHHHHHHhccCCCCC---CEEEEECCCHHHHHHHHHHHH-----cCC------CeEEEEcC
Confidence 33445556555544355 899999988776666544433 354 36776654
No 496
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.88 E-value=19 Score=38.76 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=18.9
Q ss_pred eEEEeCchhHHHHHHHHHHHH
Q 009519 325 KIVVVGAGSAGLGVLKMAVQA 345 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~ 345 (533)
||+|+|+|.+|++.|+.|...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~ 22 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ 22 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC
Confidence 799999999999998888764
No 497
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=43.73 E-value=23 Score=38.56 Aligned_cols=33 Identities=33% Similarity=0.594 Sum_probs=26.0
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccC
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDG 368 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~G 368 (533)
++|+|+|||-+|+..|-.|.+. |. ++.+++++.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-----G~-------~v~vlE~~~ 34 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-----GY-------RVTLLEQHA 34 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEecCC
Confidence 7899999999999999888764 43 466666653
No 498
>PRK06116 glutathione reductase; Validated
Probab=43.72 E-value=20 Score=38.59 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=25.8
Q ss_pred eEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEecc
Q 009519 325 KIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKD 367 (533)
Q Consensus 325 riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~ 367 (533)
-++|+|+|+||+..|..+.+. | .++.++|+.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~-----G-------~~V~liE~~ 36 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMY-----G-------AKVALIEAK 36 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----C-------CeEEEEecc
Confidence 599999999999998888654 4 378999975
No 499
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=43.55 E-value=45 Score=33.81 Aligned_cols=47 Identities=32% Similarity=0.487 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCCCCCCceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEec
Q 009519 305 AGLLGTVRAQGLSLTDFADQKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDK 366 (533)
Q Consensus 305 Agli~Alr~~g~~l~dl~~~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~ 366 (533)
+..+.++...+... . ++++|.|+|+.|...+.+... .|. ++++.+|+
T Consensus 150 ~ta~~~l~~~~~~~-g---~~vlV~G~G~vG~~~~~~ak~-----~G~------~~vi~~~~ 196 (339)
T cd08239 150 GTAYHALRRVGVSG-R---DTVLVVGAGPVGLGALMLARA-----LGA------EDVIGVDP 196 (339)
T ss_pred HHHHHHHHhcCCCC-C---CEEEEECCCHHHHHHHHHHHH-----cCC------CEEEEECC
Confidence 34455555444332 4 799999998777766554433 343 35777765
No 500
>PRK07121 hypothetical protein; Validated
Probab=43.45 E-value=21 Score=38.99 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=26.5
Q ss_pred ceEEEeCchhHHHHHHHHHHHHHHHHcCCChhhhcCeEEEEeccCc
Q 009519 324 QKIVVVGAGSAGLGVLKMAVQAAARMAGNNDAFARNKFFLLDKDGL 369 (533)
Q Consensus 324 ~riv~~GAGsAg~GiA~ll~~~~~~~~Gls~~eA~~~i~lvD~~GL 369 (533)
-.|||+|+|.||+..|-.+.+ .|. ++.++++...
T Consensus 21 ~DVvVVGaG~AGl~AA~~aae-----~G~-------~VillEK~~~ 54 (492)
T PRK07121 21 ADVVVVGFGAAGACAAIEAAA-----AGA-------RVLVLERAAG 54 (492)
T ss_pred cCEEEECcCHHHHHHHHHHHH-----CCC-------eEEEEeCCCC
Confidence 679999999999999876654 343 6888887654
Done!