Citrus Sinensis ID: 009520

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530---
MAGQRNSYGKRSHSQTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQHLLASAISNSHSSSGSLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLFDREGAVSTFVPVLPYIPVSENGSDGLNYESRDSKRHGRGPPYGGYGSSDLAAGDSYGSYGSSQVLPLKKNWCTFFKNNFCTCIIIC
ccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccEEEEEccccHHHHHHHHHccccEEEcccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEcccccEEcccccHHHHHHHHHHcccEEEEccccccccccccccEEEEEccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccHHHHHHHHcccEEEEccccccccccEEEEcccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEcccEEEEEccccccHHHHHHHHccEEEEEcccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEc
ccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEccccHHHHHHHHHcccEEEEccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccEEEEEccccHHHHHHHHHcccEEEEEccccccccccccccEEEEEccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccEEEEEcccccHHHHHHHHcccEEEEccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccEEEEEccccHHHHHHHHHcccEEEEEcccccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccEEEEEEc
magqrnsygkrshsqtdyadhgpnkrrytgddrdqfiigpedtvyrylcpirkigsiigrggEIVKQLRIdtkskirigetvpgseeRVVTVYsasdetnafedgdkfvspaQDALFKVHDRVIAeelrgdedsdgghqvtakllvpsdqigcvigkggqiVQNIRSETGAQIRIlkdehlpscalrsdeLVQISGEASVVKKALCQIAsrlhdnpsrSQHLLASAIsnshsssgslvgptaatpivgiaplmgpyggykgdtagdwsrslysaprddlsskefslrlvcpvaniggvigkggAIINQIRQEsgaaikvdssstegddclitvsskefFEDTLSATIEAVVRLQprcsekierdsglisfttrllvptsrigcligkggsIITEMRRLTKANIrilpkenlpkiaseddemvQISGDLDLAKDALIQVMTRLRANLfdregavstfvpvlpyipvsengsdglnyesrdskrhgrgppyggygssdlaagdsygsygssqvlplkknwctffknnfctciiic
magqrnsygkrshsqtdyadhgpnkrrytgddrdqfiigpedtvyryLCPIRKigsiigrggeivkqlridtkskirigetvpgseervvTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEElrgdedsdggHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQHLLASAISNSHSSSGSLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPVANIGGVIGKGGAIINQIRQESGAaikvdssstegdDCLITVSSKEFFEDTLSATIEAVVrlqprcsekierdsglisfttrllvptsrigcligkggsiiTEMRRLTKAnirilpkenlpkiaseddEMVQISGDLDLAKDALIQVMTRLRANLFDREGAVstfvpvlpyipvsengsdglNYESRDSKRHGRGPPYGGYGSSDLAAGDSYGSYGSSQVLPLKKNWCTFFKNNFCTCIIIC
MAGQRNSYGKRSHSQTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPirkigsiigrggeiVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQHLLAsaisnshsssgsLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPvaniggvigkggaiinQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLFDREGAVSTFVPVLPYIPVSENGSDGLNYESRDSKrhgrgppyggygssDLAAGDsygsygssQVLPLKKNWCTFFKNNFCTCIIIC
*********************************DQFIIGPEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVP***ERVVTVYS*******************DALFKVHDRV******************AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIA*******************************TAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYS********KEFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAI*********DDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLP*I******MVQISGDLDLAKDALIQVMTRLRANLFDREGAVSTFVPVLPYIPV**************************************GSYGSSQVLPLKKNWCTFFKNNFCTCIII*
*******************************************VYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKV**********************AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQHLLAS*******************PI******************************************VCPVANIGGVIGKGGA******************************************************************TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKEN***IASEDDEMVQISGDLDLAKDALIQVMTRLR****************************************************************************TFFKNNFCTCIIIC
*******************DHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELR********HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQHLLASAI***********GPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPVANIGGVIGKGGAIINQIRQESG***********GDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLFDREGAVSTFVPVLPYIPVSENGSDGLNYESRDSKRHGRGPPYGGYGSSDLAAGDSYGSYGSSQVLPLKKNWCTFFKNNFCTCIIIC
***************************************PEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAE**********GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPS**QHLLASAISNSHSSSGSLVGPTAATPIVGIAPLMGP*************************SKEFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLFDREGAVSTFVPVLPYIPVSENGSDGLNYESRDSKRHGRGPPYGGYGSSDLAAGDSYGSYGSSQVLPLKKNWCTFFKNNFCTCIIIC
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MAGQRNSYGKRSHSQTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQHLLASAISNSHSSSGSLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLFDREGAVSTFVPVLPYIPVSENGSDGLNYESRDSKRHGRGPPYGGYGSSDLAAGDSYGSYGSSQVLPLKKNWCTFFKNNFCTCIIIC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query533 2.2.26 [Sep-21-2011]
P58223606 KH domain-containing prot no no 0.806 0.709 0.329 1e-53
O00425579 Insulin-like growth facto yes no 0.671 0.618 0.226 2e-16
Q5RB68556 Insulin-like growth facto no no 0.592 0.568 0.242 3e-15
Q5SF07592 Insulin-like growth facto yes no 0.652 0.587 0.243 6e-15
Q9CPN8579 Insulin-like growth facto no no 0.666 0.613 0.227 3e-14
Q9PW80582 Insulin-like growth facto no no 0.660 0.604 0.235 4e-14
P57721371 Poly(rC)-binding protein no no 0.510 0.733 0.261 7e-14
P57722371 Poly(rC)-binding protein no no 0.510 0.733 0.261 9e-14
Q9UNW9492 RNA-binding protein Nova- no no 0.390 0.422 0.254 2e-13
Q9Y6M1599 Insulin-like growth facto no no 0.652 0.580 0.235 4e-13
>sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1 Back     alignment and function desciption
 Score =  211 bits (537), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 161/489 (32%), Positives = 261/489 (53%), Gaps = 59/489 (12%)

Query: 10  KRSHSQTDYADHGPNKRRYTGDD---RDQFIIGPEDTVYRYLCPIRKIGSIIGRGGEIVK 66
           KR   Q + ++   N++R    D   RD+ +      VYR LCPI  +G +IG+ G+++ 
Sbjct: 6   KRKQIQRNNSESNRNQKRRISHDKINRDELV------VYRILCPIDVVGGVIGKSGKVIN 59

Query: 67  QLRIDTKSKIRIGETVPGSEERVVTVYSA----SDETNAFEDGDKFVSPAQDALFKVHDR 122
            +R +TK+KI++ + + G  +RV+T+Y +     +E    +  ++ +  AQDAL KV+D 
Sbjct: 60  AIRHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQDALLKVYDA 119

Query: 123 VIA--EELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRIL-KDE 179
           ++A  EE     + D       +LLVP  Q   +IGK G+ ++ IR  T A ++++ KD 
Sbjct: 120 IVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDV 179

Query: 180 HLPS--CALRSDELVQISGEASVVKKALCQIASRLHD-NP-------SRSQHLLASAI-- 227
             PS  CA+  D +V ISGE   VK+AL  +++ ++  NP       S SQ + A+++  
Sbjct: 180 SDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYKINPRENIPLDSTSQDVPAASVIV 239

Query: 228 ----SNS-------HSSSGSLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPR 276
               SNS       +S+   ++   A  P    A  +  + GY    A        S P 
Sbjct: 240 PSDLSNSVYPQTGFYSNQDHILQQGAGVPSYFNALSVSDFQGYAETAANPVPVFASSLPV 299

Query: 277 D-----DLSSKEFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTE-GDD-C 329
                    S+E   +++CP+ NI  VIGKGG+ I +IR+ SG+ I+V+ S T+ GDD C
Sbjct: 300 THGFGGSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDEC 359

Query: 330 LITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGG 389
           +I V++ E  +D  S  +EAV+ LQ    E I  D    +   +LLV +  IGC+IGK G
Sbjct: 360 VIIVTATESPDDMKSMAVEAVLLLQ----EYIN-DEDAENVKMQLLVSSKVIGCVIGKSG 414

Query: 390 SIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLFDR 449
           S+I E+R+ T ANI I           + D++V++SG++   +DALIQ++ RLR ++   
Sbjct: 415 SVINEIRKRTNANICIS--------KGKKDDLVEVSGEVSSVRDALIQIVLRLREDVLGD 466

Query: 450 EGAVSTFVP 458
           + +V+T  P
Sbjct: 467 KDSVATRKP 475

Arabidopsis thaliana (taxid: 3702)
>sp|O00425|IF2B3_HUMAN Insulin-like growth factor 2 mRNA-binding protein 3 OS=Homo sapiens GN=IGF2BP3 PE=1 SV=2 Back     alignment and function description
>sp|Q5RB68|IF2B2_PONAB Insulin-like growth factor 2 mRNA-binding protein 2 OS=Pongo abelii GN=IGF2BP2 PE=2 SV=1 Back     alignment and function description
>sp|Q5SF07|IF2B2_MOUSE Insulin-like growth factor 2 mRNA-binding protein 2 OS=Mus musculus GN=Igf2bp2 PE=1 SV=1 Back     alignment and function description
>sp|Q9CPN8|IF2B3_MOUSE Insulin-like growth factor 2 mRNA-binding protein 3 OS=Mus musculus GN=Igf2bp3 PE=1 SV=1 Back     alignment and function description
>sp|Q9PW80|IF2B3_DANRE Insulin-like growth factor 2 mRNA-binding protein 3 OS=Danio rerio GN=igf2bp3 PE=1 SV=1 Back     alignment and function description
>sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 OS=Homo sapiens GN=PCBP3 PE=2 SV=2 Back     alignment and function description
>sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=2 SV=3 Back     alignment and function description
>sp|Q9UNW9|NOVA2_HUMAN RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y6M1|IF2B2_HUMAN Insulin-like growth factor 2 mRNA-binding protein 2 OS=Homo sapiens GN=IGF2BP2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query533
224141011531 predicted protein [Populus trichocarpa] 0.953 0.956 0.789 0.0
356572762548 PREDICTED: KH domain-containing protein 0.954 0.928 0.797 0.0
356550877561 PREDICTED: KH domain-containing protein 0.954 0.907 0.784 0.0
225452863548 PREDICTED: KH domain-containing protein 0.938 0.912 0.801 0.0
449527609546 PREDICTED: KH domain-containing protein 0.909 0.888 0.748 0.0
449447377545 PREDICTED: KH domain-containing protein 0.909 0.889 0.748 0.0
357496469569 Poly(rC)-binding protein [Medicago trunc 0.964 0.903 0.720 0.0
357496471553 Poly(rC)-binding protein [Medicago trunc 0.949 0.915 0.730 0.0
356531744540 PREDICTED: KH domain-containing protein 0.947 0.935 0.730 0.0
356568682543 PREDICTED: KH domain-containing protein 0.947 0.930 0.734 0.0
>gi|224141011|ref|XP_002323868.1| predicted protein [Populus trichocarpa] gi|222866870|gb|EEF04001.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/512 (78%), Positives = 455/512 (88%), Gaps = 4/512 (0%)

Query: 1   MAGQRNSYGKRSHSQTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPIRKIGSIIGR 60
           MAGQRNSYGKR+HSQ+DY D G NKRR +GDDR++F+I  +DTVYRYLCP RKIGSIIGR
Sbjct: 1   MAGQRNSYGKRAHSQSDY-DIGGNKRRNSGDDRERFVIDSQDTVYRYLCPARKIGSIIGR 59

Query: 61  GGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120
           GGEI+KQLRIDTKSKIR+GETVPG EERVVT+YS SDETN +ED   ++SPAQDALF+VH
Sbjct: 60  GGEIIKQLRIDTKSKIRVGETVPGCEERVVTIYSPSDETNEYEDSGNYISPAQDALFRVH 119

Query: 121 DRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180
           D+VIAE+L+ ++DS+G  QVTAKLLVPSDQIGC+IGKGGQIVQNIRSETGA IRILKDEH
Sbjct: 120 DKVIAEDLQVEDDSEGSPQVTAKLLVPSDQIGCIIGKGGQIVQNIRSETGAVIRILKDEH 179

Query: 181 LPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQHLLASAISNSHSSSGSLVGP 240
           LP CAL SDELVQISGEA+V+KKAL QIASRLHDNPSRSQHLL SA+ N +SS GSLVGP
Sbjct: 180 LPPCALSSDELVQISGEAAVLKKALYQIASRLHDNPSRSQHLLVSAVPNVYSSVGSLVGP 239

Query: 241 TAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPVANIGGVIG 300
           +AA PIVGIAPLMGPYGG+KGDT GDWSRSLYSAPRD+L+SKEFSLR+VCP ANIG VIG
Sbjct: 240 SAAAPIVGIAPLMGPYGGFKGDT-GDWSRSLYSAPRDELASKEFSLRVVCPTANIGAVIG 298

Query: 301 KGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEK 360
           KGG IINQIRQESGA IKVDSS  EGDDCLIT+S+KE + D  S TIEA VRLQPRCSEK
Sbjct: 299 KGGTIINQIRQESGATIKVDSSVAEGDDCLITISAKEIY-DHYSPTIEAAVRLQPRCSEK 357

Query: 361 IERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDE 420
           +ERDSGLISFTTRLLVP+SRIGCL+GKGG+II EMR+LTKA IRI  KENLPK+AS+DDE
Sbjct: 358 MERDSGLISFTTRLLVPSSRIGCLLGKGGAIIDEMRKLTKAIIRIPRKENLPKVASDDDE 417

Query: 421 MVQISGDLDLAKDALIQVMTRLRANLFDREGAVSTFVPVLPYIPVSENGSDGLNYESRDS 480
           MVQI+GDLD+AKDALIQ+  RLRAN+FDREGA+S  +PVLPY+PVS  GS+GLNY+SRD 
Sbjct: 418 MVQIAGDLDVAKDALIQISRRLRANVFDREGAMSAILPVLPYLPVSAEGSEGLNYDSRDG 477

Query: 481 KRHGR-GPPYGGYGSSDLAAGDSYGSYGSSQV 511
           KRHGR     GGY SSD A+GD YGSYGSSQ+
Sbjct: 478 KRHGRGSSYAGGYSSSDYASGDGYGSYGSSQI 509

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356572762|ref|XP_003554535.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] Back     alignment and taxonomy information
>gi|356550877|ref|XP_003543809.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] Back     alignment and taxonomy information
>gi|225452863|ref|XP_002283766.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera] gi|296082939|emb|CBI22240.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449527609|ref|XP_004170802.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449447377|ref|XP_004141445.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357496469|ref|XP_003618523.1| Poly(rC)-binding protein [Medicago truncatula] gi|355493538|gb|AES74741.1| Poly(rC)-binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|357496471|ref|XP_003618524.1| Poly(rC)-binding protein [Medicago truncatula] gi|355493539|gb|AES74742.1| Poly(rC)-binding protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356531744|ref|XP_003534436.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] Back     alignment and taxonomy information
>gi|356568682|ref|XP_003552539.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query533
TAIR|locus:2150956548 AT5G15270 "AT5G15270" [Arabido 0.881 0.857 0.624 7.7e-158
TAIR|locus:2035807479 AT1G14170 "AT1G14170" [Arabido 0.606 0.674 0.444 4.9e-69
TAIR|locus:2161413644 AT5G46190 "AT5G46190" [Arabido 0.307 0.254 0.404 2.1e-47
TAIR|locus:2168367652 RCF3 "AT5G53060" [Arabidopsis 0.804 0.657 0.301 1.8e-46
TAIR|locus:2017612621 AT1G51580 "AT1G51580" [Arabido 0.305 0.262 0.353 1.5e-38
TAIR|locus:2831364606 AT4G18375 "AT4G18375" [Arabido 0.382 0.336 0.313 3.8e-38
TAIR|locus:2056951153 AT2G03110 "AT2G03110" [Arabido 0.266 0.928 0.522 1.3e-34
TAIR|locus:2066020 632 AT2G22600 "AT2G22600" [Arabido 0.324 0.273 0.309 1.8e-18
TAIR|locus:2084908577 FLK "AT3G04610" [Arabidopsis t 0.341 0.315 0.303 5.7e-18
TAIR|locus:2120755495 PEP "AT4G26000" [Arabidopsis t 0.332 0.357 0.288 4.2e-12
TAIR|locus:2150956 AT5G15270 "AT5G15270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1538 (546.5 bits), Expect = 7.7e-158, P = 7.7e-158
 Identities = 298/477 (62%), Positives = 369/477 (77%)

Query:     5 RNSYGKRSHSQTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPXXXXXXXXXXXXXX 64
             R+S+ KRS  Q+DY D+G +KRRY GDDRD  +I  +DTV+RYLCP              
Sbjct:    12 RDSHRKRSRPQSDYDDNGGSKRRYRGDDRDSLVIDRDDTVFRYLCPVKKIGSVIGRGGDI 71

Query:    65 VKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124
             VKQLR DT+SKIRIGE +PG +ERV+T+YS SDETNAF DG+K +SPAQDALF++HDRV+
Sbjct:    72 VKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFRIHDRVV 131

Query:   125 AEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184
             A++ R ++  +G  QVTAKLLVPSDQIGC++G+GGQIVQNIRSETGAQIRI+KD ++P C
Sbjct:   132 ADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLC 191

Query:   185 ALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQHLLAXXXXXXXXXXXXLVGPTAAT 244
             AL SDEL+QISGE  +VKKAL QIASRLH+NPSRSQ+LL+            L+      
Sbjct:   192 ALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYPAGS---LMSHAGGP 248

Query:   245 PIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPXXXXXXXXXXXXX 304
              +VG+APLMG YG      AGDWSR LY  PR+D  + EF +RLV P             
Sbjct:   249 RLVGLAPLMGSYGR----DAGDWSRPLYQPPRNDPPATEFFIRLVSPVENIASVIGKGGA 304

Query:   305 XXXQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERD 364
                Q+RQE+ A IKVDSS TEG+DCLIT+S++E FED  S TIEAV+RLQP+CS+K+ERD
Sbjct:   305 LINQLRQETRATIKVDSSRTEGNDCLITISAREVFEDAYSPTIEAVMRLQPKCSDKVERD 364

Query:   365 SGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQI 424
             SGL+SFTTRLLVP+SRIGC++GKGG+IITEMRR+TKANIRIL KENLPK+AS+DDEMVQI
Sbjct:   365 SGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQI 424

Query:   425 SGDLDLAKDALIQVMTRLRANLFDREGAVSTFVPVLPYIPVSENGSDGLNYESRDSK 481
             SG+LD+AK+ALIQ+ +RLRAN+FDREGAVS  +PVLPY+PV+ +  D  +Y+SRDS+
Sbjct:   425 SGELDVAKEALIQITSRLRANVFDREGAVSALMPVLPYVPVAPDAGDRFDYDSRDSR 481
GO:0003676 "nucleic acid binding" evidence=ISS
GO:0003723 "RNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2035807 AT1G14170 "AT1G14170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161413 AT5G46190 "AT5G46190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168367 RCF3 "AT5G53060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017612 AT1G51580 "AT1G51580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2831364 AT4G18375 "AT4G18375" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056951 AT2G03110 "AT2G03110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066020 AT2G22600 "AT2G22600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084908 FLK "AT3G04610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120755 PEP "AT4G26000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query533
cd0239665 cd02396, PCBP_like_KH, K homology RNA-binding doma 2e-19
cd0239665 cd02396, PCBP_like_KH, K homology RNA-binding doma 9e-18
cd0239665 cd02396, PCBP_like_KH, K homology RNA-binding doma 4e-14
cd0239665 cd02396, PCBP_like_KH, K homology RNA-binding doma 4e-14
pfam0001359 pfam00013, KH_1, KH domain 8e-13
cd0010564 cd00105, KH-I, K homology RNA-binding domain, type 2e-12
cd0010564 cd00105, KH-I, K homology RNA-binding domain, type 8e-11
pfam0001359 pfam00013, KH_1, KH domain 1e-10
cd0010564 cd00105, KH-I, K homology RNA-binding domain, type 2e-10
smart0032268 smart00322, KH, K homology RNA-binding domain 4e-10
cd0010564 cd00105, KH-I, K homology RNA-binding domain, type 3e-09
smart0032268 smart00322, KH, K homology RNA-binding domain 9e-08
pfam1301442 pfam13014, KH_3, KH domain 9e-08
pfam0001359 pfam00013, KH_1, KH domain 1e-07
pfam1301442 pfam13014, KH_3, KH domain 2e-07
pfam0001359 pfam00013, KH_1, KH domain 4e-07
pfam1301442 pfam13014, KH_3, KH domain 4e-07
smart0032268 smart00322, KH, K homology RNA-binding domain 2e-06
smart0032268 smart00322, KH, K homology RNA-binding domain 2e-06
pfam1301442 pfam13014, KH_3, KH domain 2e-06
PRK11824693 PRK11824, PRK11824, polynucleotide phosphorylase/p 6e-06
cd0239462 cd02394, vigilin_like_KH, K homology RNA-binding d 5e-05
TIGR03591684 TIGR03591, polynuc_phos, polyribonucleotide nucleo 9e-05
cd0239361 cd02393, PNPase_KH, Polynucleotide phosphorylase ( 4e-04
cd0213461 cd02134, NusA_KH, NusA_K homology RNA-binding doma 8e-04
COG0195190 COG0195, NusA, Transcription elongation factor [Tr 8e-04
cd0239462 cd02394, vigilin_like_KH, K homology RNA-binding d 0.001
TIGR03591684 TIGR03591, polynuc_phos, polyribonucleotide nucleo 0.001
cd0239361 cd02393, PNPase_KH, Polynucleotide phosphorylase ( 0.001
TIGR02696719 TIGR02696, pppGpp_PNP, guanosine pentaphosphate sy 0.001
cd0239462 cd02394, vigilin_like_KH, K homology RNA-binding d 0.002
COG1185692 COG1185, Pnp, Polyribonucleotide nucleotidyltransf 0.002
PRK11824693 PRK11824, PRK11824, polynucleotide phosphorylase/p 0.003
COG1185692 COG1185, Pnp, Polyribonucleotide nucleotidyltransf 0.004
>gnl|CDD|239089 cd02396, PCBP_like_KH, K homology RNA-binding domain, PCBP_like Back     alignment and domain information 
 Score = 81.4 bits (202), Expect = 2e-19
 Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 4/69 (5%)

Query: 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASV 200
           T +LLVPS Q G +IGKGG  ++ IR ETGA+IR+ K   LP     ++ +V ISG+ S 
Sbjct: 1   TLRLLVPSSQAGSIIGKGGSTIKEIREETGAKIRVSKS-VLPGS---TERVVTISGKPSA 56

Query: 201 VKKALCQIA 209
           V+KAL  I 
Sbjct: 57  VQKALLLIL 65

Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are represented here, in tandem arrangement, followed by a large spacer region, with the third domain near the C-terminal end of the protein. The poly(C) binding proteins (PCBPs) can be divided into two groups, hnRNPs K/J and the alphaCPs, which share a triple KH domain configuration and poly(C) binding specificity. They play roles in mRNA stabilization, translational activation, and translational silencing. Nova-1 and Nova-2 are nuclear RNA-binding proteins that regulate splicing. This group also contains plant proteins that seem to have two tandem repeat arrrangements, like Hen4, a protein that plays a role in AGAMOUS (AG) pre-mRNA processing and important step in plant development. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. Length = 65
>gnl|CDD|239089 cd02396, PCBP_like_KH, K homology RNA-binding domain, PCBP_like Back     alignment and domain information
>gnl|CDD|239089 cd02396, PCBP_like_KH, K homology RNA-binding domain, PCBP_like Back     alignment and domain information
>gnl|CDD|239089 cd02396, PCBP_like_KH, K homology RNA-binding domain, PCBP_like Back     alignment and domain information
>gnl|CDD|215657 pfam00013, KH_1, KH domain Back     alignment and domain information
>gnl|CDD|238053 cd00105, KH-I, K homology RNA-binding domain, type I Back     alignment and domain information
>gnl|CDD|238053 cd00105, KH-I, K homology RNA-binding domain, type I Back     alignment and domain information
>gnl|CDD|215657 pfam00013, KH_1, KH domain Back     alignment and domain information
>gnl|CDD|238053 cd00105, KH-I, K homology RNA-binding domain, type I Back     alignment and domain information
>gnl|CDD|197652 smart00322, KH, K homology RNA-binding domain Back     alignment and domain information
>gnl|CDD|238053 cd00105, KH-I, K homology RNA-binding domain, type I Back     alignment and domain information
>gnl|CDD|197652 smart00322, KH, K homology RNA-binding domain Back     alignment and domain information
>gnl|CDD|221895 pfam13014, KH_3, KH domain Back     alignment and domain information
>gnl|CDD|215657 pfam00013, KH_1, KH domain Back     alignment and domain information
>gnl|CDD|221895 pfam13014, KH_3, KH domain Back     alignment and domain information
>gnl|CDD|215657 pfam00013, KH_1, KH domain Back     alignment and domain information
>gnl|CDD|221895 pfam13014, KH_3, KH domain Back     alignment and domain information
>gnl|CDD|197652 smart00322, KH, K homology RNA-binding domain Back     alignment and domain information
>gnl|CDD|197652 smart00322, KH, K homology RNA-binding domain Back     alignment and domain information
>gnl|CDD|221895 pfam13014, KH_3, KH domain Back     alignment and domain information
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>gnl|CDD|239087 cd02394, vigilin_like_KH, K homology RNA-binding domain_vigilin_like Back     alignment and domain information
>gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>gnl|CDD|239086 cd02393, PNPase_KH, Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>gnl|CDD|239049 cd02134, NusA_KH, NusA_K homology RNA-binding domain (KH) Back     alignment and domain information
>gnl|CDD|223273 COG0195, NusA, Transcription elongation factor [Transcription] Back     alignment and domain information
>gnl|CDD|239087 cd02394, vigilin_like_KH, K homology RNA-binding domain_vigilin_like Back     alignment and domain information
>gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>gnl|CDD|239086 cd02393, PNPase_KH, Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>gnl|CDD|131743 TIGR02696, pppGpp_PNP, guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>gnl|CDD|239087 cd02394, vigilin_like_KH, K homology RNA-binding domain_vigilin_like Back     alignment and domain information
>gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 533
KOG2190485 consensus PolyC-binding proteins alphaCP-1 and rel 100.0
KOG1676 600 consensus K-homology type RNA binding proteins [RN 100.0
KOG2193584 consensus IGF-II mRNA-binding protein IMP, contain 100.0
KOG2192390 consensus PolyC-binding hnRNP-K protein HRB57A/hnR 100.0
KOG1676600 consensus K-homology type RNA binding proteins [RN 99.96
KOG2193584 consensus IGF-II mRNA-binding protein IMP, contain 99.95
KOG2191402 consensus RNA-binding protein NOVA1/PASILLA and re 99.95
KOG2192 390 consensus PolyC-binding hnRNP-K protein HRB57A/hnR 99.89
KOG2191 402 consensus RNA-binding protein NOVA1/PASILLA and re 99.88
KOG2190 485 consensus PolyC-binding proteins alphaCP-1 and rel 99.88
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 99.55
PRK13763180 putative RNA-processing protein; Provisional 99.52
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 99.5
PRK13763180 putative RNA-processing protein; Provisional 99.46
cd0239665 PCBP_like_KH K homology RNA-binding domain, PCBP_l 99.39
KOG2279608 consensus Kinase anchor protein AKAP149, contains 99.33
cd0239665 PCBP_like_KH K homology RNA-binding domain, PCBP_l 99.32
cd0239361 PNPase_KH Polynucleotide phosphorylase (PNPase) K 99.22
cd0239462 vigilin_like_KH K homology RNA-binding domain_vigi 99.22
PF0001360 KH_1: KH domain syndrome, contains KH motifs.; Int 99.18
KOG2208 753 consensus Vigilin [Lipid transport and metabolism] 99.16
cd0010564 KH-I K homology RNA-binding domain, type I. KH bin 99.13
KOG2279 608 consensus Kinase anchor protein AKAP149, contains 99.13
cd0239462 vigilin_like_KH K homology RNA-binding domain_vigi 99.12
PF0001360 KH_1: KH domain syndrome, contains KH motifs.; Int 99.11
cd0239361 PNPase_KH Polynucleotide phosphorylase (PNPase) K 99.1
cd0010564 KH-I K homology RNA-binding domain, type I. KH bin 99.03
PF1301443 KH_3: KH domain 98.95
PF1301443 KH_3: KH domain 98.93
KOG2208753 consensus Vigilin [Lipid transport and metabolism] 98.89
smart0032269 KH K homology RNA-binding domain. 98.84
COG1094194 Predicted RNA-binding protein (contains KH domains 98.77
smart0032269 KH K homology RNA-binding domain. 98.75
KOG2113 394 consensus Predicted RNA binding protein, contains 98.62
COG1094194 Predicted RNA-binding protein (contains KH domains 98.62
cd02395120 SF1_like-KH Splicing factor 1 (SF1) K homology RNA 98.35
cd02395120 SF1_like-KH Splicing factor 1 (SF1) K homology RNA 98.21
KOG2113394 consensus Predicted RNA binding protein, contains 98.14
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 98.08
PRK08406140 transcription elongation factor NusA-like protein; 98.08
PRK08406140 transcription elongation factor NusA-like protein; 97.89
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 97.78
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 97.71
KOG0119 554 consensus Splicing factor 1/branch point binding p 97.68
TIGR01952141 nusA_arch NusA family KH domain protein, archaeal. 97.65
KOG0336629 consensus ATP-dependent RNA helicase [RNA processi 97.59
PLN00207891 polyribonucleotide nucleotidyltransferase; Provisi 97.57
COG1185692 Pnp Polyribonucleotide nucleotidyltransferase (pol 97.55
KOG0119554 consensus Splicing factor 1/branch point binding p 97.39
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 97.35
TIGR01952141 nusA_arch NusA family KH domain protein, archaeal. 97.29
COG1185692 Pnp Polyribonucleotide nucleotidyltransferase (pol 97.05
COG0195190 NusA Transcription elongation factor [Transcriptio 97.04
PRK11824693 polynucleotide phosphorylase/polyadenylase; Provis 96.92
PLN00207891 polyribonucleotide nucleotidyltransferase; Provisi 96.88
KOG1588259 consensus RNA-binding protein Sam68 and related KH 96.74
cd0213461 NusA_KH NusA_K homology RNA-binding domain (KH). N 96.65
KOG0336 629 consensus ATP-dependent RNA helicase [RNA processi 96.64
COG0195190 NusA Transcription elongation factor [Transcriptio 96.64
KOG1588259 consensus RNA-binding protein Sam68 and related KH 96.61
KOG2814345 consensus Transcription coactivator complex, P50 c 96.44
KOG2814345 consensus Transcription coactivator complex, P50 c 96.43
TIGR01953341 NusA transcription termination factor NusA. This m 96.39
cd0213461 NusA_KH NusA_K homology RNA-binding domain (KH). N 96.38
PRK12328374 nusA transcription elongation factor NusA; Provisi 96.23
PRK12327362 nusA transcription elongation factor NusA; Provisi 96.18
PRK04163235 exosome complex RNA-binding protein Rrp4; Provisio 96.05
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 95.91
PRK12704 520 phosphodiesterase; Provisional 95.87
PRK00106 535 hypothetical protein; Provisional 95.87
PRK0046875 hypothetical protein; Provisional 95.86
PRK11824693 polynucleotide phosphorylase/polyadenylase; Provis 95.83
PRK12329449 nusA transcription elongation factor NusA; Provisi 95.81
TIGR01953341 NusA transcription termination factor NusA. This m 95.8
COG5176269 MSL5 Splicing factor (branch point binding protein 95.75
KOG1067760 consensus Predicted RNA-binding polyribonucleotide 95.63
COG5176269 MSL5 Splicing factor (branch point binding protein 95.58
PRK0282177 hypothetical protein; Provisional 95.52
PF14611210 SLS: Mitochondrial inner-membrane-bound regulator 95.46
PRK12328374 nusA transcription elongation factor NusA; Provisi 95.38
PRK09202470 nusA transcription elongation factor NusA; Validat 95.33
PRK12327362 nusA transcription elongation factor NusA; Provisi 95.32
PRK0282177 hypothetical protein; Provisional 95.28
PRK0046875 hypothetical protein; Provisional 95.28
COG183776 Predicted RNA-binding protein (contains KH domain) 95.09
PRK12329449 nusA transcription elongation factor NusA; Provisi 94.97
PRK04163235 exosome complex RNA-binding protein Rrp4; Provisio 94.86
PRK0106478 hypothetical protein; Provisional 94.8
COG183776 Predicted RNA-binding protein (contains KH domain) 94.8
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 94.56
PRK0106478 hypothetical protein; Provisional 94.53
PRK09202470 nusA transcription elongation factor NusA; Validat 94.38
PRK00106535 hypothetical protein; Provisional 94.34
PRK12704520 phosphodiesterase; Provisional 94.33
PF14611210 SLS: Mitochondrial inner-membrane-bound regulator 93.05
PRK12705 508 hypothetical protein; Provisional 92.89
KOG4369 2131 consensus RTK signaling protein MASK/UNC-44 [Signa 92.87
PF1308373 KH_4: KH domain; PDB: 3GKU_B. 92.5
KOG3273252 consensus Predicted RNA-binding protein Pno1p inte 91.11
KOG1067760 consensus Predicted RNA-binding polyribonucleotide 90.42
COG1855604 ATPase (PilT family) [General function prediction 89.99
cd0240968 KH-II KH-II (K homology RNA-binding domain, type I 89.9
KOG2874356 consensus rRNA processing protein [Translation, ri 89.04
PF1308373 KH_4: KH domain; PDB: 3GKU_B. 88.95
PRK12705508 hypothetical protein; Provisional 88.5
cd0240968 KH-II KH-II (K homology RNA-binding domain, type I 88.31
KOG2874356 consensus rRNA processing protein [Translation, ri 87.46
cd02410145 archeal_CPSF_KH The archaeal cleavage and polyaden 87.3
KOG4369 2131 consensus RTK signaling protein MASK/UNC-44 [Signa 86.78
COG1782 637 Predicted metal-dependent RNase, consists of a met 86.24
PF1318469 KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW 86.01
COG1097239 RRP4 RNA-binding protein Rrp4 and related proteins 85.94
PRK13764602 ATPase; Provisional 85.03
PF1318469 KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW 84.53
COG5166657 Uncharacterized conserved protein [Function unknow 84.51
cd0241477 jag_KH jag_K homology RNA-binding domain. The KH d 84.23
cd0241477 jag_KH jag_K homology RNA-binding domain. The KH d 84.16
KOG3273252 consensus Predicted RNA-binding protein Pno1p inte 84.04
PF0765078 KH_2: KH domain syndrome, contains KH motifs.; Int 83.49
PF0765078 KH_2: KH domain syndrome, contains KH motifs.; Int 82.94
COG1855604 ATPase (PilT family) [General function prediction 82.21
cd0241381 40S_S3_KH K homology RNA-binding (KH) domain of th 81.79
COG1097239 RRP4 RNA-binding protein Rrp4 and related proteins 81.71
PRK13764602 ATPase; Provisional 81.43
>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-46  Score=392.90  Aligned_cols=398  Identities=40%  Similarity=0.617  Sum_probs=313.0

Q ss_pred             CCcCCCCCCCCCCCCCCCCCccccCCCCCCCcccCCCceEEEEEecCCccceeecCCcHHHHHHHHHhCCeEEEcCCCCC
Q 009520            5 RNSYGKRSHSQTDYADHGPNKRRYTGDDRDQFIIGPEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPG   84 (533)
Q Consensus         5 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rilvp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~~~~   84 (533)
                      |....++........+++..+++...+..... ..+...+|||||+.+.+|.||||+|.+||+||.+|.++|+|.+..++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~t~~~RlL~~~kevG~IIGk~G~~vkkir~~t~s~i~i~~~~~~   84 (485)
T KOG2190|consen    6 RGLPRPKNSTTSNVGDNGSIKRPSLGDPVIST-GPDETLTYRLLCHVKEVGSIIGKKGDIVKKIRKETESKIRVNESLPG   84 (485)
T ss_pred             ccCccccCCCcccccCCCcccccCCCCCcccC-CCCCcceEEEEeccccceeEEccCcHHHHHHhhcccccceeecCCCC
Confidence            44455666666777666666665555543333 44444459999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEcCCccccccccCcccCCHHHHHHHHHHHHHHHhh---ccCCCC---CCCCCceEEEEEecCCceeeeeccC
Q 009520           85 SEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEE---LRGDED---SDGGHQVTAKLLVPSDQIGCVIGKG  158 (533)
Q Consensus        85 ~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a~~~i~~~i~~~~---~~~~~~---~~~~~~~~~~llVp~~~~g~IIGk~  158 (533)
                      |.||+|+|+|...+        ..++++++|++++++.+....   .....+   +.....++++||||.+++|+||||+
T Consensus        85 c~eRIiti~g~~~~--------~~~~~~~~al~ka~~~iv~~~~~d~~~~~d~~~~~~~~~v~~RLlVp~sq~GslIGK~  156 (485)
T KOG2190|consen   85 CPERIITITGNRVE--------LNLSPATDALFKAFDMIVFKLEEDDEAAEDNGEDASGPEVTCRLLVPSSQVGSLIGKG  156 (485)
T ss_pred             CCcceEEEeccccc--------ccCCchHHHHHHHHHHHhhcccccccccccCCccccCCceEEEEEechhheeeeeccC
Confidence            99999999997322        168889999999999988631   111111   1222368999999999999999999


Q ss_pred             chHHHHHHhhcCceEEEeecCCCCcccCCCCceEEEEcCHHHHHHHHHHHHHHHhcCCCCccccccccccCCCC---CCC
Q 009520          159 GQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRSQHLLASAISNSHS---SSG  235 (533)
Q Consensus       159 G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~~~~~~~~~~s~~~~~~~---~gg  235 (533)
                      |+.||+|+++|||+|+|.++ .+|.   +++|.|+|.|.+++|.+|+..|..+|+++..+....+.+..+ .+|   .++
T Consensus       157 G~~Ik~Ire~TgA~I~v~~~-~lP~---ster~V~IsG~~~av~~al~~Is~~L~~~~~~~~~~~~st~~-y~P~~~~~~  231 (485)
T KOG2190|consen  157 GSLIKEIREETGAKIRVSSD-MLPN---STERAVTISGEPDAVKKALVQISSRLLENPPRSPPPLVSTIP-YRPSASQGG  231 (485)
T ss_pred             cHHHHHHHHhcCceEEecCC-CCCc---ccceeEEEcCchHHHHHHHHHHHHHHHhcCCcCCCCCCCccc-CCCcccccC
Confidence            99999999999999999987 8887   578999999999999999999999999976553332222211 000   000


Q ss_pred             CCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEEEeeecCccccccccCchhhHhhhhhcCC
Q 009520          236 SLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPVANIGGVIGKGGAIINQIRQESGA  315 (533)
Q Consensus       236 ~~~~p~~~~~~~~~~p~~~~~g~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~v~vp~~~~g~IIGk~G~~Ik~i~~~tga  315 (533)
                      .+...               ++       ...+  .+.++.....+.++..++.+|...++.|+|++|..|+.|+.++++
T Consensus       232 ~~~~s---------------~~-------~~~~--~~~~~~~~~~~~e~~~~~~~p~~~~~~v~g~~~~~i~~l~~~~~~  287 (485)
T KOG2190|consen  232 PVLPS---------------TA-------QTSP--DAHPFGGIVPEEELVFKLICPSDKVGSVIGKGGLVIRALRNETGA  287 (485)
T ss_pred             ccccc---------------cc-------cCCc--ccccccccccchhhhhhhcCchhhceeeecCCCccchhhhhhcCC
Confidence            00000               00       0000  111222234456778899999999999999999999999999999


Q ss_pred             eEEecCCCCCCCceeEEecCcchhhhhhhHHHHHHHHhCcccccccccccCCcceeEEEeecCCceeEEecCCChhHHHH
Q 009520          316 AIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEM  395 (533)
Q Consensus       316 ~I~i~~~~~~~~ervi~I~G~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~Vp~~~~G~IIGkgG~~Ik~I  395 (533)
                      .|.+.....+   |+++++..+..++.++++++++++.++++.+....+. ...++.+|+||.+++||||||+|.+|.+|
T Consensus       288 ~i~v~~~~~~---~~i~~s~~e~~~~~~s~a~~a~~~~~~~~~~~~~~~~-~~~v~~~l~vps~~igciiGk~G~~isei  363 (485)
T KOG2190|consen  288 SISVGDSRTD---RIVTISARENPEDRYSMAQEALLLVQPRISENAGDDL-TQTVTQRLLVPSDLIGCIIGKGGAKISEI  363 (485)
T ss_pred             ceEeccccCc---ceeeeccccCcccccccchhhhhhccccccccccccc-cceeeeeeccCccccceeecccccchHHH
Confidence            9999987654   9999999999999999999999999999887766555 67899999999999999999999999999


Q ss_pred             HHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhccc
Q 009520          396 RRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLF  447 (533)
Q Consensus       396 ~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~~  447 (533)
                      |+.|||.|+|..+++.   ...++++++|+|+..+...|..++..++.....
T Consensus       364 r~~tgA~I~I~~~~~~---~~~~e~~~~I~~~~~~~~~~~~~~~~~~~~~~~  412 (485)
T KOG2190|consen  364 RQRTGASISILNKEEV---SGVREALVQITGMLREDLLAQYLIRARLSAPKS  412 (485)
T ss_pred             HHhcCCceEEcccccc---CCcceeEEEecchhHHHHhhhhhcccccccCcc
Confidence            9999999999887653   247899999999999999999999877765543

>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification] Back     alignment and domain information
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification] Back     alignment and domain information
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG2192 consensus PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG2191 consensus RNA-binding protein NOVA1/PASILLA and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>KOG2190 consensus PolyC-binding proteins alphaCP-1 and related KH domain proteins [RNA processing and modification; General function prediction only] Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like Back     alignment and domain information
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like Back     alignment and domain information
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like Back     alignment and domain information
>PF00013 KH_1: KH domain syndrome, contains KH motifs Back     alignment and domain information
>KOG2208 consensus Vigilin [Lipid transport and metabolism] Back     alignment and domain information
>cd00105 KH-I K homology RNA-binding domain, type I Back     alignment and domain information
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms] Back     alignment and domain information
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like Back     alignment and domain information
>PF00013 KH_1: KH domain syndrome, contains KH motifs Back     alignment and domain information
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>cd00105 KH-I K homology RNA-binding domain, type I Back     alignment and domain information
>PF13014 KH_3: KH domain Back     alignment and domain information
>PF13014 KH_3: KH domain Back     alignment and domain information
>KOG2208 consensus Vigilin [Lipid transport and metabolism] Back     alignment and domain information
>smart00322 KH K homology RNA-binding domain Back     alignment and domain information
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information
>smart00322 KH K homology RNA-binding domain Back     alignment and domain information
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only] Back     alignment and domain information
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only] Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>PRK08406 transcription elongation factor NusA-like protein; Validated Back     alignment and domain information
>PRK08406 transcription elongation factor NusA-like protein; Validated Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>TIGR01952 nusA_arch NusA family KH domain protein, archaeal Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>TIGR01952 nusA_arch NusA family KH domain protein, archaeal Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0195 NusA Transcription elongation factor [Transcription] Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification] Back     alignment and domain information
>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH) Back     alignment and domain information
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] Back     alignment and domain information
>COG0195 NusA Transcription elongation factor [Transcription] Back     alignment and domain information
>KOG1588 consensus RNA-binding protein Sam68 and related KH domain proteins [RNA processing and modification] Back     alignment and domain information
>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription] Back     alignment and domain information
>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription] Back     alignment and domain information
>TIGR01953 NusA transcription termination factor NusA Back     alignment and domain information
>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH) Back     alignment and domain information
>PRK12328 nusA transcription elongation factor NusA; Provisional Back     alignment and domain information
>PRK12327 nusA transcription elongation factor NusA; Provisional Back     alignment and domain information
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PRK00468 hypothetical protein; Provisional Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>PRK12329 nusA transcription elongation factor NusA; Provisional Back     alignment and domain information
>TIGR01953 NusA transcription termination factor NusA Back     alignment and domain information
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] Back     alignment and domain information
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] Back     alignment and domain information
>PRK02821 hypothetical protein; Provisional Back     alignment and domain information
>PF14611 SLS: Mitochondrial inner-membrane-bound regulator Back     alignment and domain information
>PRK12328 nusA transcription elongation factor NusA; Provisional Back     alignment and domain information
>PRK09202 nusA transcription elongation factor NusA; Validated Back     alignment and domain information
>PRK12327 nusA transcription elongation factor NusA; Provisional Back     alignment and domain information
>PRK02821 hypothetical protein; Provisional Back     alignment and domain information
>PRK00468 hypothetical protein; Provisional Back     alignment and domain information
>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only] Back     alignment and domain information
>PRK12329 nusA transcription elongation factor NusA; Provisional Back     alignment and domain information
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional Back     alignment and domain information
>PRK01064 hypothetical protein; Provisional Back     alignment and domain information
>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only] Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK01064 hypothetical protein; Provisional Back     alignment and domain information
>PRK09202 nusA transcription elongation factor NusA; Validated Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PF14611 SLS: Mitochondrial inner-membrane-bound regulator Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] Back     alignment and domain information
>PF13083 KH_4: KH domain; PDB: 3GKU_B Back     alignment and domain information
>KOG3273 consensus Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>COG1855 ATPase (PilT family) [General function prediction only] Back     alignment and domain information
>cd02409 KH-II KH-II (K homology RNA-binding domain, type II) Back     alignment and domain information
>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13083 KH_4: KH domain; PDB: 3GKU_B Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>cd02409 KH-II KH-II (K homology RNA-binding domain, type II) Back     alignment and domain information
>KOG2874 consensus rRNA processing protein [Translation, ribosomal structure and biogenesis; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd02410 archeal_CPSF_KH The archaeal cleavage and polyadenylation specificity factor (CPSF) contains an N-terminal K homology RNA-binding domain (KH) Back     alignment and domain information
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] Back     alignment and domain information
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only] Back     alignment and domain information
>PF13184 KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW_A 1K0R_B 2ASB_A Back     alignment and domain information
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13764 ATPase; Provisional Back     alignment and domain information
>PF13184 KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW_A 1K0R_B 2ASB_A Back     alignment and domain information
>COG5166 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd02414 jag_KH jag_K homology RNA-binding domain Back     alignment and domain information
>cd02414 jag_KH jag_K homology RNA-binding domain Back     alignment and domain information
>KOG3273 consensus Predicted RNA-binding protein Pno1p interacting with Nob1p and involved in 26S proteasome assembly [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF07650 KH_2: KH domain syndrome, contains KH motifs Back     alignment and domain information
>PF07650 KH_2: KH domain syndrome, contains KH motifs Back     alignment and domain information
>COG1855 ATPase (PilT family) [General function prediction only] Back     alignment and domain information
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3 Back     alignment and domain information
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK13764 ATPase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query533
1j5k_A89 Complex Of The Kh3 Domain Of Hnrnp K With A Single_ 9e-05
2jzx_A160 Pcbp2 Kh1-Kh2 Domains Length = 160 1e-04
3vke_A76 Contribution Of The First K-Homology Domain Of Poly 2e-04
1wvn_A82 Crsytal Structure Of Domain 3 Of Human Alpha Polyc 2e-04
2anr_A178 Crystal Structure (Ii) Of Nova-1 Kh1KH2 DOMAIN TAND 3e-04
1zzi_A82 Crystal Structure Analysis Of The Third Kh Domain O 3e-04
2ann_A178 Crystal Structure (I) Of Nova-1 Kh1KH2 DOMAIN TANDE 3e-04
1khm_A89 C-Terminal Kh Domain Of Hnrnp K (Kh3) Length = 89 7e-04
>pdb|1J5K|A Chain A, Complex Of The Kh3 Domain Of Hnrnp K With A Single_stranded 10mer Dna Oligonucleotide Length = 89 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQIS 195
           GG  +T ++ +P D  G +IGKGGQ ++ IR E+GA I+I  DE L       D ++ I+
Sbjct: 10  GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DEPLEGS---EDRIITIT 64
Query: 196 GEASVVKKA 204
           G    ++ A
Sbjct: 65  GTQDQIQNA 73
>pdb|2JZX|A Chain A, Pcbp2 Kh1-Kh2 Domains Length = 160 Back     alignment and structure
>pdb|3VKE|A Chain A, Contribution Of The First K-Homology Domain Of Poly(C)-Binding Protein 1 To Its Affinity And Specificity For C-Rich Oligonucleotides Length = 76 Back     alignment and structure
>pdb|1WVN|A Chain A, Crsytal Structure Of Domain 3 Of Human Alpha Polyc Binding Protein Length = 82 Back     alignment and structure
>pdb|2ANR|A Chain A, Crystal Structure (Ii) Of Nova-1 Kh1KH2 DOMAIN TANDEM WITH 25NT RNA Hairpin Length = 178 Back     alignment and structure
>pdb|1ZZI|A Chain A, Crystal Structure Analysis Of The Third Kh Domain Of Hnrnp K In Complex With Ssdna Length = 82 Back     alignment and structure
>pdb|2ANN|A Chain A, Crystal Structure (I) Of Nova-1 Kh1KH2 DOMAIN TANDEM WITH 25 NT RNA Hairpin Length = 178 Back     alignment and structure
>pdb|1KHM|A Chain A, C-Terminal Kh Domain Of Hnrnp K (Kh3) Length = 89 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query533
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 7e-42
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 1e-31
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 1e-22
1j4w_A174 FUSE binding protein; single-stranded DNA binding 9e-39
1j4w_A174 FUSE binding protein; single-stranded DNA binding 7e-30
1j4w_A174 FUSE binding protein; single-stranded DNA binding 1e-08
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 1e-38
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 1e-33
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 1e-07
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 8e-07
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 1e-36
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 2e-32
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 4e-18
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 1e-08
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 1e-33
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 1e-25
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 3e-22
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 2e-10
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 2e-08
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 7e-18
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 3e-11
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 4e-11
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 3e-10
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 4e-17
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 5e-14
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 2e-11
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 2e-10
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 5e-17
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 1e-11
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 3e-09
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 2e-08
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 6e-17
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 5e-12
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 3e-09
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 2e-08
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 8e-17
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 1e-11
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 8e-11
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 1e-10
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 3e-16
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 7e-10
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 1e-08
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 2e-08
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 4e-16
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 3e-10
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 3e-10
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 9e-10
1x4m_A94 FAR upstream element binding protein 1; KH domain, 1e-15
1x4m_A94 FAR upstream element binding protein 1; KH domain, 6e-09
1x4m_A94 FAR upstream element binding protein 1; KH domain, 4e-08
1x4m_A94 FAR upstream element binding protein 1; KH domain, 4e-07
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 2e-15
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 3e-10
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 3e-10
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 6e-10
1we8_A104 Tudor and KH domain containing protein; structural 4e-13
1we8_A104 Tudor and KH domain containing protein; structural 5e-08
1we8_A104 Tudor and KH domain containing protein; structural 3e-07
1we8_A104 Tudor and KH domain containing protein; structural 1e-06
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 8e-13
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 2e-09
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 2e-07
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 2e-06
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 7e-12
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 8e-09
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 8e-08
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 1e-06
1x4n_A92 FAR upstream element binding protein 1; KH domain, 1e-10
1x4n_A92 FAR upstream element binding protein 1; KH domain, 1e-08
1x4n_A92 FAR upstream element binding protein 1; KH domain, 2e-08
1x4n_A92 FAR upstream element binding protein 1; KH domain, 3e-08
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 3e-10
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 3e-08
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 4e-04
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 3e-10
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 3e-06
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 4e-06
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 2e-05
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 1e-08
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 5e-07
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 4e-04
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 7e-04
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 2e-08
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 2e-07
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 2e-04
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 3e-04
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 2e-07
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 5e-04
1tua_A191 Hypothetical protein APE0754; structural genomics, 3e-07
1tua_A191 Hypothetical protein APE0754; structural genomics, 4e-06
1tua_A191 Hypothetical protein APE0754; structural genomics, 5e-04
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 4e-07
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 5e-07
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 7e-06
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 6e-07
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 5e-05
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 1e-04
2dgr_A83 Ring finger and KH domain-containing protein 1; st 7e-07
2dgr_A83 Ring finger and KH domain-containing protein 1; st 5e-04
3n89_A376 Defective in GERM LINE development protein 3, ISO; 2e-06
2cxc_A144 NUSA; transcription termination, RNA binding prote 3e-06
3cdi_A723 Polynucleotide phosphorylase; mRNA turnover, RNAse 6e-06
3cdi_A723 Polynucleotide phosphorylase; mRNA turnover, RNAse 3e-04
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 7e-06
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 2e-04
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 2e-05
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 2e-04
2ctj_A95 Vigilin; K homology type I domain, RNA-binding, ce 2e-05
1e3p_A757 Guanosine pentaphosphate synthetase; polyribonucle 8e-05
1e3p_A757 Guanosine pentaphosphate synthetase; polyribonucle 6e-04
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Length = 178 Back     alignment and structure
 Score =  147 bits (372), Expect = 7e-42
 Identities = 43/185 (23%), Positives = 83/185 (44%), Gaps = 16/185 (8%)

Query: 39  GPEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRI---GETVPGSEERVVTVYSA 95
                  + L P    GSIIG+GG+ + QL+ +T + I++    +  PG+ ERV  +   
Sbjct: 2   LGSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT 61

Query: 96  SDETNAFEDGDKFVSPAQDALFKVHDRVIAEE----LRGDEDSDGGHQVTAKLLVPSDQI 151
            +        +       + + ++   V   E    L+     +       K++VP+   
Sbjct: 62  IEAL------NAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTA 115

Query: 152 GCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASR 211
           G +IGKGG  V+ I  ++GA +++ +    P      + +V +SGE    +KA+  I  +
Sbjct: 116 GLIIGKGGATVKAIMEQSGAWVQLSQK---PDGINLQNRVVTVSGEPEQNRKAVELIIQK 172

Query: 212 LHDNP 216
           + ++P
Sbjct: 173 IQEDP 177
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Length = 178 Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Length = 178 Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Length = 174 Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Length = 174 Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Length = 174 Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Length = 163 Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Length = 163 Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Length = 163 Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Length = 163 Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Length = 160 Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Length = 160 Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Length = 160 Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Length = 160 Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Length = 164 Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Length = 164 Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Length = 164 Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Length = 164 Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Length = 164 Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Length = 89 Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Length = 89 Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Length = 89 Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Length = 89 Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Length = 73 Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Length = 73 Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Length = 73 Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Length = 73 Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Length = 76 Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Length = 76 Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Length = 76 Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Length = 76 Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Length = 87 Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Length = 87 Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Length = 87 Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Length = 87 Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Length = 82 Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Length = 82 Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Length = 82 Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Length = 82 Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Length = 85 Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Length = 85 Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Length = 85 Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Length = 85 Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Length = 82 Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Length = 82 Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Length = 82 Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Length = 82 Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Length = 94 Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Length = 94 Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Length = 94 Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Length = 94 Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Length = 76 Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Length = 76 Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Length = 76 Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Length = 76 Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Length = 104 Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Length = 104 Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Length = 104 Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Length = 104 Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 107 Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 107 Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 107 Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 107 Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 106 Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 106 Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 106 Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Length = 106 Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Length = 92 Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Length = 92 Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Length = 92 Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Length = 92 Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Length = 144 Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Length = 144 Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Length = 144 Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 94 Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 94 Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 94 Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 94 Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Length = 219 Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Length = 219 Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Length = 219 Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Length = 219 Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 104 Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 104 Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 104 Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 104 Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 95 Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 95 Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Length = 191 Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Length = 191 Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Length = 191 Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 97 Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 97 Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 97 Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Length = 71 Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Length = 71 Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Length = 71 Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Length = 376 Back     alignment and structure
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A Length = 144 Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Length = 723 Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Length = 723 Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Length = 726 Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Length = 726 Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Length = 630 Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Length = 630 Back     alignment and structure
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 95 Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Length = 757 Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Length = 757 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query533
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 99.93
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 99.93
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 99.92
1j4w_A174 FUSE binding protein; single-stranded DNA binding 99.91
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 99.9
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 99.89
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 99.89
3n89_A376 Defective in GERM LINE development protein 3, ISO; 99.89
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 99.87
1j4w_A174 FUSE binding protein; single-stranded DNA binding 99.87
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 99.86
3n89_A376 Defective in GERM LINE development protein 3, ISO; 99.84
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 99.72
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 99.71
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 99.6
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 99.59
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 99.52
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 99.51
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 99.51
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 99.5
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 99.5
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 99.5
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 99.49
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 99.47
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 99.45
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 99.44
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 99.44
2dgr_A83 Ring finger and KH domain-containing protein 1; st 99.44
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 99.43
1x4n_A92 FAR upstream element binding protein 1; KH domain, 99.42
1x4m_A94 FAR upstream element binding protein 1; KH domain, 99.42
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 99.42
1tua_A191 Hypothetical protein APE0754; structural genomics, 99.42
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 99.42
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 99.4
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 99.39
1tua_A191 Hypothetical protein APE0754; structural genomics, 99.38
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 99.38
1we8_A104 Tudor and KH domain containing protein; structural 99.37
1x4n_A92 FAR upstream element binding protein 1; KH domain, 99.36
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 99.36
2dgr_A83 Ring finger and KH domain-containing protein 1; st 99.35
1x4m_A94 FAR upstream element binding protein 1; KH domain, 99.35
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 99.34
1we8_A104 Tudor and KH domain containing protein; structural 99.34
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 99.32
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 99.32
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 99.3
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 99.29
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 99.29
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 99.27
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 99.26
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 99.25
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 99.22
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 99.2
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 99.13
2ctj_A95 Vigilin; K homology type I domain, RNA-binding, ce 99.07
2ctf_A102 Vigilin; K homology type I domain, RNA-binding, ce 99.06
2ctj_A95 Vigilin; K homology type I domain, RNA-binding, ce 99.06
2ctf_A102 Vigilin; K homology type I domain, RNA-binding, ce 99.01
2cpq_A91 FragIle X mental retardation syndrome related prot 98.85
2cpq_A91 FragIle X mental retardation syndrome related prot 98.74
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 98.56
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 98.45
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 98.44
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 98.36
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 98.18
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 98.07
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 98.05
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 97.79
3v69_A140 Protein filia; RNA-binding, embryogenesis, KH doma 97.68
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 97.62
2cxc_A144 NUSA; transcription termination, RNA binding prote 97.48
2cxc_A144 NUSA; transcription termination, RNA binding prote 97.17
3v69_A140 Protein filia; RNA-binding, embryogenesis, KH doma 97.14
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 97.1
2asb_A251 Transcription elongation protein NUSA; protein-RNA 96.06
1k0r_A366 NUSA; two component arrangement, S1 domain, two K- 95.8
3cdi_A723 Polynucleotide phosphorylase; mRNA turnover, RNAse 95.75
2asb_A251 Transcription elongation protein NUSA; protein-RNA 95.08
1e3p_A757 Guanosine pentaphosphate synthetase; polyribonucle 94.79
1k0r_A366 NUSA; two component arrangement, S1 domain, two K- 94.47
3cdi_A723 Polynucleotide phosphorylase; mRNA turnover, RNAse 94.37
1hh2_P344 NUSA, N utilization substance protein A; transcrip 94.22
1hh2_P344 NUSA, N utilization substance protein A; transcrip 92.69
1e3p_A757 Guanosine pentaphosphate synthetase; polyribonucle 92.64
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
Probab=99.93  E-value=4.6e-26  Score=211.15  Aligned_cols=162  Identities=24%  Similarity=0.411  Sum_probs=128.8

Q ss_pred             CCCceEEEEEecCCccceeecCCcHHHHHHHHHhCCeEEEcCC---CCCCCceEEEEEcCCccccccccCcccCCHHHHH
Q 009520           39 GPEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET---VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDA  115 (533)
Q Consensus        39 ~~~~~~~rilvp~~~~g~IIGk~G~~Ik~i~~~tga~I~i~~~---~~~~~ervv~I~G~~~~~~~~~~~~~~v~~a~~a  115 (533)
                      .++.++++|+||.+++|.||||+|++|++|+++|||+|+|++.   .+++.+|+|+|+|..++             +.+|
T Consensus         2 l~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~-------------v~~A   68 (178)
T 2anr_A            2 LGSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEA-------------LNAV   68 (178)
T ss_dssp             -CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHH-------------HHHH
T ss_pred             CCCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHH-------------HHHH
Confidence            3678999999999999999999999999999999999999864   46789999999998665             3455


Q ss_pred             HHHHHHHHHHhhccCC-----------CCCCCCCceEEEEEecCCceeeeeccCchHHHHHHhhcCceEEEeecCCCCcc
Q 009520          116 LFKVHDRVIAEELRGD-----------EDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC  184 (533)
Q Consensus       116 ~~~i~~~i~~~~~~~~-----------~~~~~~~~~~~~llVp~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~  184 (533)
                      ...|.+.+.+......           .........+++|+||.+++|+||||+|++||+|+++|||+|+|.++...   
T Consensus        69 ~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~---  145 (178)
T 2anr_A           69 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDG---  145 (178)
T ss_dssp             HHHHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-----
T ss_pred             HHHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCC---
Confidence            5555554432110000           00012245789999999999999999999999999999999999875432   


Q ss_pred             cCCCCceEEEEcCHHHHHHHHHHHHHHHhcCC
Q 009520          185 ALRSDELVQISGEASVVKKALCQIASRLHDNP  216 (533)
Q Consensus       185 ~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~~  216 (533)
                      ..+.++.|+|+|++++|.+|+.+|.++|+++|
T Consensus       146 ~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p  177 (178)
T 2anr_A          146 INLQNRVVTVSGEPEQNRKAVELIIQKIQEDP  177 (178)
T ss_dssp             --CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence            24678999999999999999999999999864
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Back     alignment and structure
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus} Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A Back     alignment and structure
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A Back     alignment and structure
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus} Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A Back     alignment and structure
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A Back     alignment and structure
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 533
d1we8a_104 d.51.1.1 (A:) Tudor and KH domain containing prote 3e-15
d1we8a_104 d.51.1.1 (A:) Tudor and KH domain containing prote 8e-10
d1we8a_104 d.51.1.1 (A:) Tudor and KH domain containing prote 2e-05
d1we8a_104 d.51.1.1 (A:) Tudor and KH domain containing prote 7e-05
d2axya171 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Hum 3e-15
d2axya171 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Hum 3e-13
d2axya171 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Hum 4e-09
d2axya171 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Hum 5e-08
d1wvna170 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Huma 7e-15
d1wvna170 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Huma 2e-11
d1wvna170 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Huma 1e-08
d1wvna170 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Huma 4e-08
d1dtja_74 d.51.1.1 (A:) Neuro-oncological ventral antigen 2, 2e-14
d1dtja_74 d.51.1.1 (A:) Neuro-oncological ventral antigen 2, 5e-12
d1dtja_74 d.51.1.1 (A:) Neuro-oncological ventral antigen 2, 2e-08
d1dtja_74 d.51.1.1 (A:) Neuro-oncological ventral antigen 2, 1e-06
d1x4ma181 d.51.1.1 (A:8-88) Far upstream binding element, FB 5e-14
d1x4ma181 d.51.1.1 (A:8-88) Far upstream binding element, FB 1e-10
d1x4ma181 d.51.1.1 (A:8-88) Far upstream binding element, FB 3e-07
d1x4ma181 d.51.1.1 (A:8-88) Far upstream binding element, FB 7e-06
d1x4na179 d.51.1.1 (A:8-86) Far upstream binding element, FB 1e-13
d1x4na179 d.51.1.1 (A:8-86) Far upstream binding element, FB 2e-10
d1x4na179 d.51.1.1 (A:8-86) Far upstream binding element, FB 4e-09
d1x4na179 d.51.1.1 (A:8-86) Far upstream binding element, FB 1e-08
d1zzka175 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapie 7e-13
d1zzka175 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapie 1e-10
d1zzka175 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapie 1e-07
d1zzka175 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapie 4e-07
d1j4wa271 d.51.1.1 (A:104-174) Far upstream binding element, 5e-12
d1j4wa271 d.51.1.1 (A:104-174) Far upstream binding element, 7e-10
d1j4wa271 d.51.1.1 (A:104-174) Far upstream binding element, 3e-08
d1j4wa271 d.51.1.1 (A:104-174) Far upstream binding element, 1e-05
d2ctea181 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T 1e-11
d2ctea181 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T 8e-08
d2ctea181 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T 2e-07
d2ctea181 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T 6e-06
d2ctka191 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [T 1e-10
d2ctka191 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [T 2e-09
d2ctka191 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [T 2e-06
d2ctka191 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [T 3e-05
d2ctla184 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [T 2e-10
d2ctla184 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [T 7e-10
d2ctla184 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [T 7e-08
d2ctla184 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [T 9e-05
d1j4wa174 d.51.1.1 (A:1-74) Far upstream binding element, FB 6e-10
d1j4wa174 d.51.1.1 (A:1-74) Far upstream binding element, FB 4e-09
d1j4wa174 d.51.1.1 (A:1-74) Far upstream binding element, FB 1e-07
d1j4wa174 d.51.1.1 (A:1-74) Far upstream binding element, FB 2e-07
d1viga_71 d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId 7e-09
d1viga_71 d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId 1e-05
d1viga_71 d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId 5e-05
d1viga_71 d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId 4e-04
d2ctma181 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T 1e-08
d2ctma181 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T 7e-06
d2ctma181 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T 1e-05
d2ctma181 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T 0.001
d1e3ha454 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/ 3e-08
d1e3ha454 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/ 1e-07
d1e3ha454 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/ 3e-06
d1e3ha454 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/ 1e-05
d2ctja182 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [T 5e-08
d2ctja182 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [T 3e-04
d2ctja182 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [T 0.001
d2cpqa178 d.51.1.1 (A:212-289) Fragile X mental retardation 2e-06
d2cpqa178 d.51.1.1 (A:212-289) Fragile X mental retardation 2e-05
d2cpqa178 d.51.1.1 (A:212-289) Fragile X mental retardation 0.002
d1tuaa184 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Ae 2e-06
d1tuaa184 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Ae 9e-06
d1tuaa184 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Ae 2e-05
d2ba0a384 d.51.1.1 (A:136-219) Exosome complex RNA-binding p 5e-06
d2ba0a384 d.51.1.1 (A:136-219) Exosome complex RNA-binding p 2e-05
d2ba0a384 d.51.1.1 (A:136-219) Exosome complex RNA-binding p 2e-05
d2z0sa287 d.51.1.1 (A:148-234) Exosome complex RNA-binding p 3e-05
d2z0sa287 d.51.1.1 (A:148-234) Exosome complex RNA-binding p 7e-04
d2z0sa287 d.51.1.1 (A:148-234) Exosome complex RNA-binding p 0.004
d2je6i369 d.51.1.1 (I:153-221) Exosome complex RNA-binding p 6e-04
d2je6i369 d.51.1.1 (I:153-221) Exosome complex RNA-binding p 7e-04
d2je6i369 d.51.1.1 (I:153-221) Exosome complex RNA-binding p 0.001
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Tudor and KH domain containing protein, Tdrkh
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.2 bits (169), Expect = 3e-15
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 139 QVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEA 198
            V  +L VP   +G +IG+GG+ +++I   +GA+I   K+       L    L++ISG  
Sbjct: 14  PVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKE---SEGTLLLSRLIKISGTQ 70

Query: 199 SVVKKALCQIASRLHDNPSRSQHLLASAISNSHSSSG 235
             V  A   I  ++ ++    + +  SA   S  SSG
Sbjct: 71  KEVAAAKHLILEKVSEDEELRKRIAHSA---SGPSSG 104
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 81 Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 81 Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 81 Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 81 Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 91 Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 91 Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 91 Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 91 Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Length = 54 Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Length = 54 Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Length = 54 Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Length = 54 Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 78 Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 78 Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 78 Back     information, alignment and structure
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Length = 84 Back     information, alignment and structure
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Length = 84 Back     information, alignment and structure
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Length = 84 Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 84 Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 84 Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 84 Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 87 Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 87 Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 87 Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 69 Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 69 Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 69 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query533
d1zzka175 HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} 99.56
d1wvna170 Poly(RC)-binding protein 1 {Human (Homo sapiens) [ 99.56
d2axya171 Poly(RC)-binding protein 2 {Human (Homo sapiens) [ 99.56
d1x4ma181 Far upstream binding element, FBP {Mouse (Mus musc 99.55
d1dtja_74 Neuro-oncological ventral antigen 2, nova-2, KH3 { 99.54
d1j4wa271 Far upstream binding element, FBP {Human (Homo sap 99.54
d2axya171 Poly(RC)-binding protein 2 {Human (Homo sapiens) [ 99.53
d1j4wa174 Far upstream binding element, FBP {Human (Homo sap 99.52
d1x4ma181 Far upstream binding element, FBP {Mouse (Mus musc 99.5
d1j4wa271 Far upstream binding element, FBP {Human (Homo sap 99.5
d1dtja_74 Neuro-oncological ventral antigen 2, nova-2, KH3 { 99.49
d1zzka175 HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} 99.48
d1wvna170 Poly(RC)-binding protein 1 {Human (Homo sapiens) [ 99.48
d1x4na179 Far upstream binding element, FBP {Mouse (Mus musc 99.47
d1j4wa174 Far upstream binding element, FBP {Human (Homo sap 99.46
d1we8a_104 Tudor and KH domain containing protein, Tdrkh {Mou 99.46
d2ctma181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.43
d1x4na179 Far upstream binding element, FBP {Mouse (Mus musc 99.43
d1we8a_104 Tudor and KH domain containing protein, Tdrkh {Mou 99.42
d2ctla184 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.39
d2ctea181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.38
d1viga_71 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.34
d2ctma181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.34
d2ctja182 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.34
d2ctla184 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.33
d2ctea181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.31
d2ctka191 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.3
d1viga_71 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.27
d2ctja182 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.27
d2ctka191 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.22
d2cpqa178 Fragile X mental retardation syndrome related prot 99.22
d2ba0a384 Exosome complex RNA-binding protein 1, ECR1 {Archa 99.21
d2ctfa190 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.19
d2ctfa190 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.13
d2ba0a384 Exosome complex RNA-binding protein 1, ECR1 {Archa 99.12
d2cpqa178 Fragile X mental retardation syndrome related prot 99.08
d2je6i369 Exosome complex RNA-binding protein 1, ECR1 {Sulfo 98.82
d1tuaa184 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 98.78
d2je6i369 Exosome complex RNA-binding protein 1, ECR1 {Sulfo 98.74
d1tuaa184 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 98.72
d2z0sa287 Exosome complex RNA-binding protein 1, ECR1 {Aerop 98.72
d2z0sa287 Exosome complex RNA-binding protein 1, ECR1 {Aerop 98.66
d1e3ha454 Polynucleotide phosphorylase/guanosine pentaphosph 98.58
d1e3ha454 Polynucleotide phosphorylase/guanosine pentaphosph 98.58
d1tuaa2104 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 98.45
d1tuaa2104 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 98.35
d1k1ga_122 RNA splicing factor 1 {Human (Homo sapiens) [TaxId 98.13
d1k1ga_122 RNA splicing factor 1 {Human (Homo sapiens) [TaxId 97.85
d2bl5a1134 Quaking protein A (Xqua) {African clawed frog (Xen 97.73
d2bl5a1134 Quaking protein A (Xqua) {African clawed frog (Xen 97.46
d1hh2p368 Transcription factor NusA, C-terminal domains {The 95.41
d2asba367 Transcription factor NusA, C-terminal domains {Myc 95.19
d2asba367 Transcription factor NusA, C-terminal domains {Myc 94.91
d1hh2p368 Transcription factor NusA, C-terminal domains {The 94.55
d2ja9a285 Ribosomal RNA-processing protein 40, RRP40 {Saccha 83.72
d2ja9a285 Ribosomal RNA-processing protein 40, RRP40 {Saccha 80.45
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: HnRNP K, KH3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.6e-15  Score=115.98  Aligned_cols=72  Identities=26%  Similarity=0.486  Sum_probs=65.2

Q ss_pred             ceeEEEeecCCceeEEecCCChhHHHHHHhcCceEEEecCCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHhc
Q 009520          369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN  445 (533)
Q Consensus       369 ~~~~~l~Vp~~~~G~IIGkgG~~Ik~I~~~tga~I~i~~~~~~P~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~  445 (533)
                      .+|.+|.||.+++|+||||+|++|++|+++|||+|.|...     .+.+++|+|+|+|++++|+.|+.+|.++|+++
T Consensus         3 ~~t~~i~VP~~~vg~iIG~~G~~I~~I~~~sga~I~i~~~-----~~~~~~r~i~I~G~~~~v~~A~~~I~~~i~e~   74 (75)
T d1zzka1           3 IITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-----LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY   74 (75)
T ss_dssp             CEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT-----TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEChHhcCeeECCCCchHHHHHhhcCCeEEEccC-----CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence            5788999999999999999999999999999999999643     23467899999999999999999999999874
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1hh2p3 d.52.3.1 (P:277-344) Transcription factor NusA, C-terminal domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1hh2p3 d.52.3.1 (P:277-344) Transcription factor NusA, C-terminal domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure