Your job contains 1 sequence.
>009521
MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ
VQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKHT
RQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGK
LVNFSQSTAPPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMS
RASSSGLNDDVRKVISPSERGKTETIEPTVTSSSGGSGSSFNRTSKQSTGDNSLKRKSRD
AVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIP
HCNKTDKASMLDEAIEYLKSLQLQLQMSQVMWMGSGMAPLMFPGMQHYMSRMGMGMGPPP
LPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMG
FHPMQANSQPMNMFRFGSPTMQNQIVSLPSSSCVPFSGGAATDNSPLSGKMG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 009521
(532 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2077680 - symbol:PIL6 "AT3G59060" species:3702... 441 9.9e-58 2
TAIR|locus:2053733 - symbol:PIF4 "AT2G43010" species:3702... 403 3.3e-53 2
TAIR|locus:2061634 - symbol:PIL5 "phytochrome interacting... 320 8.0e-39 2
UNIPROTKB|Q8GRJ1 - symbol:OJ1343_B12.103 "Transcription f... 330 8.1e-37 2
TAIR|locus:2012345 - symbol:PIF3 "AT1G09530" species:3702... 386 9.2e-36 1
TAIR|locus:4010713915 - symbol:AT4G28811 species:3702 "Ar... 240 7.2e-22 2
UNIPROTKB|Q5NAE0 - symbol:P0498A12.33 "Putative BP-5 prot... 263 1.5e-21 2
TAIR|locus:2117773 - symbol:AT4G28790 species:3702 "Arabi... 220 9.8e-21 2
UNIPROTKB|Q7FA23 - symbol:OSJNBa0058K23.6 "Os04g0618600 p... 248 1.9e-20 1
UNIPROTKB|Q5VRS4 - symbol:OSJNBa0015I14.14 "Basic helix-l... 237 3.1e-19 1
TAIR|locus:4010713916 - symbol:AT4G28815 species:3702 "Ar... 203 4.9e-19 3
TAIR|locus:2117788 - symbol:AT4G28800 species:3702 "Arabi... 210 6.3e-19 2
TAIR|locus:2155503 - symbol:ALC "AT5G67110" species:3702 ... 204 1.7e-17 2
TAIR|locus:2115080 - symbol:SPT "AT4G36930" species:3702 ... 234 3.6e-17 1
UNIPROTKB|Q948F6 - symbol:OSJNBa0049O12.18 "Putative SPAT... 216 3.0e-16 1
TAIR|locus:2041369 - symbol:PIL1 "phytochrome interacting... 202 2.1e-14 2
TAIR|locus:2126876 - symbol:UNE10 "AT4G00050" species:370... 206 2.8e-14 2
TAIR|locus:2047555 - symbol:LRL1 "AT2G24260" species:3702... 174 1.4e-11 2
TAIR|locus:2163163 - symbol:PIF7 "AT5G61270" species:3702... 181 3.9e-11 2
UNIPROTKB|Q6AUE8 - symbol:OSJNBb0029I19.4 "Os03g0639300 p... 174 1.5e-10 1
TAIR|locus:2126624 - symbol:LRL2 "AT4G30980" species:3702... 171 3.5e-10 1
TAIR|locus:2147760 - symbol:LRL3 "AT5G58010" species:3702... 167 8.6e-10 1
TAIR|locus:2132303 - symbol:UNE12 "AT4G02590" species:370... 167 1.0e-09 1
UNIPROTKB|Q7Y1H4 - symbol:OSJNBa0094F01.11 "Putative unch... 166 1.1e-09 1
UNIPROTKB|Q6Z2G7 - symbol:P0680A05.9 "Putative bHLH trans... 166 2.1e-09 1
UNIPROTKB|Q94LR3 - symbol:OSJNBa0010C11.7 "Helix-loop-hel... 143 4.8e-09 1
UNIPROTKB|Q6EPZ6 - symbol:P0014G10.34 "BHLH transcription... 163 8.4e-09 2
UNIPROTKB|Q6Z7E7 - symbol:P0020C11.18 "Putative bHLH tran... 162 1.3e-08 1
TAIR|locus:2007534 - symbol:AT1G03040 "AT1G03040" species... 156 1.7e-08 1
UNIPROTKB|Q2QMM0 - symbol:LOC_Os12g40710 "Helix-loop-heli... 154 1.8e-08 1
TAIR|locus:2201906 - symbol:AT1G10120 "AT1G10120" species... 154 4.9e-08 1
UNIPROTKB|Q69Y51 - symbol:P0698A06.26-2 "Putative bHLH tr... 154 6.0e-08 1
UNIPROTKB|Q8GZV6 - symbol:OJ1017C11.10 "Putative uncharac... 158 6.4e-08 1
UNIPROTKB|Q84T08 - symbol:OSJNBa0087C10.10 "BHLH transcri... 149 6.8e-08 1
UNIPROTKB|Q69WS3 - symbol:OJ1118_E12.15 "Putative bHLH pr... 149 7.1e-08 1
TAIR|locus:2202867 - symbol:BPEp "AT1G59640" species:3702... 151 9.0e-08 1
UNIPROTKB|Q5VR96 - symbol:P0038C05.31-1 "Os06g0275600 pro... 151 1.5e-07 1
UNIPROTKB|Q6K8Y4 - symbol:OJ1695_H09.18 "Basic helix-loop... 137 2.1e-07 4
TAIR|locus:2079676 - symbol:AT3G07340 "AT3G07340" species... 150 2.1e-07 2
TAIR|locus:2205420 - symbol:AT1G68920 species:3702 "Arabi... 150 2.4e-07 1
UNIPROTKB|Q2QMV9 - symbol:LOC_Os12g39850 "Helix-loop-heli... 144 2.9e-07 2
UNIPROTKB|Q75M33 - symbol:P0668H12.5 "BHLH transcription ... 146 3.2e-07 1
TAIR|locus:2095198 - symbol:AT3G23690 "AT3G23690" species... 146 3.9e-07 1
TAIR|locus:2115200 - symbol:BEE2 "AT4G36540" species:3702... 143 5.3e-07 1
UNIPROTKB|Q84LH4 - symbol:OSJNBb0011H13.2 "Putative Helix... 143 6.4e-07 1
TAIR|locus:505006688 - symbol:AT5G50915 "AT5G50915" speci... 140 9.7e-07 1
TAIR|locus:2118934 - symbol:RSL2 "AT4G33880" species:3702... 142 9.7e-07 1
UNIPROTKB|Q6ZCV8 - symbol:P0028A08.20 "Os08g0487700 prote... 142 1.1e-06 1
UNIPROTKB|Q2R0R9 - symbol:LOC_Os11g41640 "Helix-loop-heli... 137 1.3e-06 1
TAIR|locus:2139484 - symbol:CIB1 "AT4G34530" species:3702... 140 1.5e-06 1
TAIR|locus:2172209 - symbol:AT5G62610 "AT5G62610" species... 138 1.5e-06 1
TAIR|locus:2152551 - symbol:AT5G48560 "AT5G48560" species... 148 2.0e-06 2
UNIPROTKB|Q69JJ6 - symbol:OSJNBa0026C08.22 "TA1 protein-l... 140 2.4e-06 1
TAIR|locus:2098008 - symbol:PIL2 "phytochrome interacting... 140 2.4e-06 2
TAIR|locus:2012393 - symbol:AT1G68810 "AT1G68810" species... 132 3.9e-06 2
TAIR|locus:2028804 - symbol:CIB5 "AT1G26260" species:3702... 137 4.3e-06 1
UNIPROTKB|Q336P5 - symbol:Os10g0575000 "Os10g0575000 prot... 140 5.1e-06 1
UNIPROTKB|Q6AV35 - symbol:OSJNBa0063J18.7 "Putative trans... 134 5.7e-06 1
UNIPROTKB|Q84QW1 - symbol:OJ1191_A10.109 "BHLH transcript... 139 6.0e-06 2
TAIR|locus:2027809 - symbol:BEE3 "AT1G73830" species:3702... 132 6.0e-06 1
TAIR|locus:504954900 - symbol:AT5G43175 "AT5G43175" speci... 129 7.4e-06 1
UNIPROTKB|Q2QMN2 - symbol:LOC_Os12g40590 "Helix-loop-heli... 131 8.2e-06 1
UNIPROTKB|Q2QML8 - symbol:LOC_Os12g40730 "Helix-loop-heli... 138 8.3e-06 2
TAIR|locus:2053766 - symbol:AT2G42300 "AT2G42300" species... 133 8.4e-06 1
UNIPROTKB|Q2QQ32 - symbol:LOC_Os12g32400 "Helix-loop-heli... 125 1.2e-05 1
TAIR|locus:2014144 - symbol:BEE1 "BR enhanced expression ... 129 1.3e-05 1
UNIPROTKB|Q8S490 - symbol:rau1 "Transcription factor RAU1... 110 1.7e-05 1
TAIR|locus:2204898 - symbol:HFR1 "AT1G02340" species:3702... 129 1.8e-05 1
TAIR|locus:2199221 - symbol:RSL4 "AT1G27740" species:3702... 126 2.8e-05 1
TAIR|locus:2062235 - symbol:NAI1 "AT2G22770" species:3702... 126 4.9e-05 1
UNIPROTKB|Q5N802 - symbol:P0004D12.24 "BHLH transcription... 134 6.1e-05 2
TAIR|locus:2065086 - symbol:AT2G40200 "AT2G40200" species... 122 7.7e-05 1
UNIPROTKB|Q6ZFY4 - symbol:OJ1311_H06.19 "BHLH protein-lik... 123 9.0e-05 1
UNIPROTKB|Q6Z339 - symbol:B1121A12.20 "Os02g0726700 prote... 124 9.3e-05 1
UNIPROTKB|Q84LF9 - symbol:RERJ1 "Transcription Factor" sp... 123 9.8e-05 1
TAIR|locus:2090847 - symbol:ICE1 "AT3G26744" species:3702... 126 0.00011 1
TAIR|locus:2032990 - symbol:CES "AT1G25330" species:3702 ... 119 0.00011 2
TAIR|locus:2085964 - symbol:BHLH32 "AT3G25710" species:37... 122 0.00016 1
UNIPROTKB|Q6ZA99 - symbol:P0431A03.9 "Os08g0432800 protei... 122 0.00016 1
UNIPROTKB|Q6ESL3 - symbol:OJ1294_G06.8 "DNA binding prote... 121 0.00022 1
UNIPROTKB|Q8W5G3 - symbol:OSJNBa0002J24.23 "Helix-loop-he... 117 0.00046 1
TAIR|locus:2035237 - symbol:AT1G01260 "AT1G01260" species... 121 0.00048 1
UNIPROTKB|Q657A4 - symbol:P0022F12.30 "Regulatory protein... 118 0.00050 1
UNIPROTKB|Q69TX2 - symbol:P0021C04.13 "BHLH protein-like"... 112 0.00062 1
TAIR|locus:2008693 - symbol:FBH1 "AT1G35460" species:3702... 114 0.00066 1
UNIPROTKB|Q651K2 - symbol:B1089G05.30 "BHLH protein-like"... 114 0.00089 1
TAIR|locus:2062230 - symbol:AT2G22760 "AT2G22760" species... 114 0.00089 1
TAIR|locus:2144791 - symbol:HEC3 "AT5G09750" species:3702... 111 0.00098 1
>TAIR|locus:2077680 [details] [associations]
symbol:PIL6 "AT3G59060" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0009585 "red,
far-red light phototransduction" evidence=IMP] [GO:0009693
"ethylene biosynthetic process" evidence=IMP] [GO:0010600
"regulation of auxin biosynthetic process" evidence=IDA]
[GO:0010928 "regulation of auxin mediated signaling pathway"
evidence=IDA] [GO:0000096 "sulfur amino acid metabolic process"
evidence=RCA] [GO:0006546 "glycine catabolic process" evidence=RCA]
[GO:0006636 "unsaturated fatty acid biosynthetic process"
evidence=RCA] [GO:0006733 "oxidoreduction coenzyme metabolic
process" evidence=RCA] [GO:0006766 "vitamin metabolic process"
evidence=RCA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0008652 "cellular amino acid biosynthetic process"
evidence=RCA] [GO:0009072 "aromatic amino acid family metabolic
process" evidence=RCA] [GO:0009073 "aromatic amino acid family
biosynthetic process" evidence=RCA] [GO:0009106 "lipoate metabolic
process" evidence=RCA] [GO:0009108 "coenzyme biosynthetic process"
evidence=RCA] [GO:0009117 "nucleotide metabolic process"
evidence=RCA] [GO:0009630 "gravitropism" evidence=RCA] [GO:0009684
"indoleacetic acid biosynthetic process" evidence=RCA] [GO:0009695
"jasmonic acid biosynthetic process" evidence=RCA] [GO:0009965
"leaf morphogenesis" evidence=RCA] [GO:0010017 "red or far-red
light signaling pathway" evidence=RCA] [GO:0015995 "chlorophyll
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0019748 "secondary metabolic process"
evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
evidence=RCA] [GO:0030003 "cellular cation homeostasis"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0044272 "sulfur compound biosynthetic process" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009693 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL163527 GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240264 HSSP:P22415 GO:GO:0010928
ProtClustDB:CLSN2680212 GO:GO:0010600 EMBL:AF488598 EMBL:AB103112
EMBL:AY081271 EMBL:BT000049 IPI:IPI00541791 IPI:IPI00543835
IPI:IPI00890365 PIR:T47788 RefSeq:NP_001030889.1
RefSeq:NP_001030890.1 RefSeq:NP_191465.3 RefSeq:NP_851021.1
UniGene:At.43437 UniGene:At.67329 ProteinModelPortal:Q84LH8
SMR:Q84LH8 IntAct:Q84LH8 STRING:Q84LH8 EnsemblPlants:AT3G59060.2
EnsemblPlants:AT3G59060.3 EnsemblPlants:AT3G59060.4 GeneID:825075
KEGG:ath:AT3G59060 TAIR:At3g59060 eggNOG:NOG259206
InParanoid:Q84LH8 OMA:SHCGSNQ PhylomeDB:Q84LH8
Genevestigator:Q84LH8 Uniprot:Q84LH8
Length = 444
Score = 441 (160.3 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 127/322 (39%), Positives = 175/322 (54%)
Query: 219 SMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTXXXXXXX 278
S++TVG SHCGSNQ S+ ++ +S S+R K E T
Sbjct: 146 SVITVGPSHCGSNQ-----------STNIHQATTLPVSMSDRSKNVE-ERLDTSSGGSSG 193
Query: 279 XXFNRTSKQSTGDNS--LKRKSRDAVDSECQSEAA---GFESG----AGNKTAQRSGSCR 329
+ R +K++ S + RK + +D++ +S + G S GNK++QRSGS R
Sbjct: 194 CSYGRNNKETVSGTSVTIDRKRKHVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTR 253
Query: 330 RSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYXXXXXXXXXXXX 389
RSRAAEVHNLSERRRRDRINE+M+ALQELIPHC++TDKAS+LDEAI+Y
Sbjct: 254 RSRAAEVHNLSERRRRDRINERMKALQELIPHCSRTDKASILDEAIDYLKSLQMQLQ--- 310
Query: 390 VMWMGSGMA--------PLMFPGMQH--YMSRXXXXXXXXXLPSVTNPMHFSRVPLVDQS 439
VMWMGSGMA P+MFPG+Q Y+++ ++ + M S+ P++++S
Sbjct: 311 VMWMGSGMAAAAAAAASPMMFPGVQSSPYINQM----------AMQSQMQLSQFPVMNRS 360
Query: 440 MSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHP--------MQA-NSQP 490
A + ++CQ NPV Q Q QN +EQ ARYMG P MQ QP
Sbjct: 361 ---APQNHPGLVCQ----NPVQLQLQAQNQILSEQLARYMGGIPQMPPAGNQMQTVQQQP 413
Query: 491 MNMFRFGSPTMQNQIVSLPSSS 512
+M FGSP +S P+++
Sbjct: 414 ADMLGFGSPAGPQSQLSAPATT 435
Score = 170 (64.9 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 48/146 (32%), Positives = 71/146 (48%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
M DWNFE + +S + + ++ELVELLW++G VVL SQA+ R+PS+ +Q
Sbjct: 1 MEQVFADWNFEDNFHMSTNKRSIRPEDELVELLWRDGQVVLQSQAR--REPSVQVQTHKQ 58
Query: 61 VQKQTLRGSGSC--GNSSNL-------IQDDETVSWIHCP---IEDSFEKDFYSQLFSEL 108
+TLR + N + + D ETVSWI P + D FE +F S FS +
Sbjct: 59 ---ETLRKPNNIFLDNQETVQKPNYAALDDQETVSWIQYPPDDVIDPFESEFSSHFFSSI 115
Query: 109 PPSGPMEVDKHTRQLREEKMVKFDPP 134
G E + + + + PP
Sbjct: 116 DHLGGPEKPRTIEETVKHEAQAMAPP 141
>TAIR|locus:2053733 [details] [associations]
symbol:PIF4 "AT2G43010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0010017 "red or far-red light
signaling pathway" evidence=RCA;IMP] [GO:0010161 "red light
signaling pathway" evidence=IGI] [GO:0009704 "de-etiolation"
evidence=IMP] [GO:0010600 "regulation of auxin biosynthetic
process" evidence=IDA] [GO:0010928 "regulation of auxin mediated
signaling pathway" evidence=IDA] [GO:0000165 "MAPK cascade"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=RCA] [GO:0009617 "response to bacterium" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] [GO:0009862 "systemic
acquired resistance, salicylic acid mediated signaling pathway"
evidence=RCA] [GO:0009867 "jasmonic acid mediated signaling
pathway" evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0031348 "negative
regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0009585 Gene3D:4.10.280.10
SUPFAM:SSF47459 GO:GO:0010161 GO:GO:0009704 GO:GO:0010928
EMBL:AC006224 EMBL:AJ440755 EMBL:AF251694 EMBL:AY142625
EMBL:AF360221 EMBL:EF193514 EMBL:EF193515 EMBL:EF193516
EMBL:EF193517 EMBL:EF193518 EMBL:EF193519 EMBL:EF193520
EMBL:EF193521 EMBL:EF193522 EMBL:EF193523 EMBL:EF193524
EMBL:EF193525 EMBL:EF193526 EMBL:EF193527 IPI:IPI00520232
IPI:IPI00534557 PIR:H84860 RefSeq:NP_565991.2 UniGene:At.19015
ProteinModelPortal:Q8W2F3 SMR:Q8W2F3 IntAct:Q8W2F3 STRING:Q8W2F3
EnsemblPlants:AT2G43010.1 GeneID:818903 KEGG:ath:AT2G43010
TAIR:At2g43010 eggNOG:NOG244119 InParanoid:Q8W2F3 KO:K16189
OMA:IRETEME PhylomeDB:Q8W2F3 ProtClustDB:CLSN2680212
Genevestigator:Q8W2F3 GermOnline:AT2G43010 GO:GO:0010600
Uniprot:Q8W2F3
Length = 430
Score = 403 (146.9 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
Identities = 113/290 (38%), Positives = 150/290 (51%)
Query: 190 PPKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLND 249
PP + P + SG + + E+ + S+ TVG SHCGSN DLD+S ++
Sbjct: 129 PPPQVMPPPKFRLTNSSSG-IRETEMEQYSVTTVGPSHCGSNPSQNDLDVS------MSH 181
Query: 250 DVRKVISPSERGKTETIEPTVTXXXXXXXX-XFNRTSKQSTGDNSLKR-KSRDAVDSECQ 307
D K I E + P + F + K+ + + R ++
Sbjct: 182 DRSKNIE-------EKLNPNASSSSGGSSGCSFGKDIKEMASGRCITTDRKRKRINHT-- 232
Query: 308 SEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDK 367
E+ GNK+ QRSGS RRSRAAEVHNLSERRRRDRINE+M+ALQELIPHC+KTDK
Sbjct: 233 DESVSLSDAIGNKSNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKTDK 292
Query: 368 ASMLDEAIEYXXXXXXXXXXXXVMWMGSGMA------PLMFPGMQHYMSRXXXXXXXXXL 421
AS+LDEAI+Y VMWMGSGMA P+MFPG+Q +
Sbjct: 293 ASILDEAIDYLKSLQLQLQ---VMWMGSGMAAAAASAPMMFPGVQPQQ----------FI 339
Query: 422 PSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNF 471
+ +P+ R P++DQS A N ++CQ NPV QNQ+ + F
Sbjct: 340 RQIQSPVQLPRFPVMDQS---AIQNNPGLVCQ----NPV--QNQIISDRF 380
Score = 165 (63.1 bits), Expect = 3.3e-53, Sum P(2) = 3.3e-53
Identities = 43/105 (40%), Positives = 55/105 (52%)
Query: 8 WNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLR 67
W+FE + +S + + +ELVELLW++G VVL SQ H E Q QKQ
Sbjct: 6 WSFEENYSLSTNRRSIRPQDELVELLWRDGQVVLQSQT---------HREQTQTQKQDHH 56
Query: 68 GSGSCGNSSNLIQDDETVSWI-HCPIEDSFEKD-FYSQLFSELPP 110
SS ++D ETVSWI + P ED FE D F S FS + P
Sbjct: 57 EEAL--RSSTFLEDQETVSWIQYPPDEDPFEPDDFSSHFFSTMDP 99
Score = 134 (52.2 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 63/263 (23%), Positives = 109/263 (41%)
Query: 52 SLNHNEPRQVQKQTLRGSGSCGNSSNLIQDDETVSWI-HCPIEDSFEKD-FYSQLFSELP 109
S H E Q QKQ SS ++D ETVSWI + P ED FE D F S FS +
Sbjct: 41 SQTHREQTQTQKQDHHEEAL--RSSTFLEDQETVSWIQYPPDEDPFEPDDFSSHFFSTMD 98
Query: 110 PSGPMEVDKHTRQLREEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAA 169
P + + T + + K +PP + V P+ MPPP+F + +++
Sbjct: 99 P-----LQRPTSETVKPKSSP-EPPQVM-------VKPKACPDPPPQVMPPPKFRLTNSS 145
Query: 170 PQNKNLGDLGKLVNFSQSTAPPK--GELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSH 227
+ ++ +S +T P G P D S + ++ + E SS
Sbjct: 146 SGIRET----EMEQYSVTTVGPSHCGS-NPSQNDLDVSMSHDRSKN-IEEKLNPNASSSS 199
Query: 228 CGSNQVAYDLDMSRASSSGL--NDDVRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTS 285
GS+ ++ D+ +S D RK I+ ++ ++ ++ + NR S
Sbjct: 200 GGSSGCSFGKDIKEMASGRCITTDRKRKRINHTD--ESVSLSDAIGNKSNQRSGS-NRRS 256
Query: 286 KQSTGDNSLKRKSRDAVDSECQS 308
+ + N +R+ RD ++ ++
Sbjct: 257 RAAEVHNLSERRRRDRINERMKA 279
Score = 116 (45.9 bits), Expect = 9.9e-17, Sum P(2) = 9.9e-17
Identities = 38/104 (36%), Positives = 55/104 (52%)
Query: 424 VTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHP 483
+ +P+ R P++DQS A N ++CQ NPV QNQ+ ++++ARY+G P
Sbjct: 342 IQSPVQLPRFPVMDQS---AIQNNPGLVCQ----NPV--QNQI----ISDRFARYIGGFP 388
Query: 484 -MQANSQ--PMNMFRFGSPTMQNQIVSLPSSSCVPFSGGAATDN 524
MQA +Q PM M RF SP Q PSS + G+ D+
Sbjct: 389 HMQAATQMQPMEMLRFSSPAGQQS--QQPSSVPTKTTDGSRLDH 430
>TAIR|locus:2061634 [details] [associations]
symbol:PIL5 "phytochrome interacting factor 3-like 5"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0015995 "chlorophyll
biosynthetic process" evidence=IMP] [GO:0010187 "negative
regulation of seed germination" evidence=IGI;IMP] [GO:0010313
"phytochrome binding" evidence=IDA] [GO:0009959 "negative
gravitropism" evidence=IMP;TAS] [GO:0010029 "regulation of seed
germination" evidence=TAS] [GO:0010099 "regulation of
photomorphogenesis" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0009740 "gibberellic acid mediated
signaling pathway" evidence=RCA;IMP] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=IMP] [GO:0010161 "red
light signaling pathway" evidence=IDA] [GO:0006783 "heme
biosynthetic process" evidence=IMP] [GO:0042802 "identical protein
binding" evidence=IPI] [GO:0009686 "gibberellin biosynthetic
process" evidence=RCA] [GO:0009845 "seed germination" evidence=RCA]
[GO:0048608 "reproductive structure development" evidence=RCA]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010187 GO:GO:0006783 Gene3D:4.10.280.10
SUPFAM:SSF47459 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30
GO:GO:0010161 EMBL:AC006081 HSSP:P61244 HOGENOM:HOG000240264
GO:GO:0015995 GO:GO:0010100 GO:GO:0009740 GO:GO:0009959
EMBL:AF488560 EMBL:AB103113 EMBL:AK228820 EMBL:BT029775
IPI:IPI00527244 IPI:IPI00537020 PIR:A84586 RefSeq:NP_001189559.1
RefSeq:NP_179608.2 RefSeq:NP_849996.1 UniGene:At.43003
UniGene:At.69322 ProteinModelPortal:Q8GZM7 SMR:Q8GZM7 IntAct:Q8GZM7
STRING:Q8GZM7 PRIDE:Q8GZM7 EnsemblPlants:AT2G20180.2
EnsemblPlants:AT2G20180.3 GeneID:816538 KEGG:ath:AT2G20180
TAIR:At2g20180 eggNOG:NOG264707 InParanoid:Q8GZM7 OMA:QEDEMTS
PhylomeDB:Q8GZM7 ProtClustDB:CLSN2690808 Genevestigator:Q8GZM7
GO:GO:0010313 Uniprot:Q8GZM7
Length = 478
Score = 320 (117.7 bits), Expect = 8.0e-39, Sum P(2) = 8.0e-39
Identities = 118/342 (34%), Positives = 161/342 (47%)
Query: 200 GQFDRKRSGN----LTQGEVRECSMMT------VGSSHCGSNQVAYDLDMSRASSSGLND 249
G F+ R G L++ VRE + ++ +S G + D S + G +
Sbjct: 153 GDFNNGRGGESGPLLSKAVVRESTQVSPSATPSAAASESGLTRRTDGTDSSAVAGGGAYN 212
Query: 250 DVRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTSKQSTGDNSLKRKSRDAVDSECQSE 309
K ++ + IE T T + + T + KRK R+A ++ ++E
Sbjct: 213 RKGKAVAMT----APAIEITGTSSSVVSK---SEIEPEKTNVDDRKRKEREATTTD-ETE 264
Query: 310 AAGFESGAGNKTAQRSG-SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKA 368
+ E+ K A+ S S +RSRAAEVHNLSER+RRDRINE+M+ALQELIP CNK+DKA
Sbjct: 265 SRSEET----KQARVSTTSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKA 320
Query: 369 SMLDEAIEYXXXXXXXXXXXXVMWMGSGMAPLMFPGMQHYMSRXXXXXXXXXL---PS-V 424
SMLDEAIEY +M MG GM P+M+PGMQ YM PS +
Sbjct: 321 SMLDEAIEYMKSLQLQIQ---MMSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPSFM 377
Query: 425 TNP-MHFSRVPLVDQSMSMAQAQNRAVMCQ--ASVLNPVNYQ-----NQMQN-SNFTEQY 475
P M ++ PL Q+ V + V P N Q Q Q + +T+ Y
Sbjct: 378 PFPNMLAAQRPLPTQTHMAGSGPQYPVHASDPSRVFVP-NQQYDPTSGQPQYPAGYTDPY 436
Query: 476 ARYMGFHPMQANSQPMNMFRFGSPTMQNQIVSLPSSSCVPFS 517
++ G HP +QP P QNQ S PSSS V S
Sbjct: 437 QQFRGLHP----TQP--------PQFQNQATSYPSSSRVSSS 466
Score = 148 (57.2 bits), Expect = 8.0e-39, Sum P(2) = 8.0e-39
Identities = 37/89 (41%), Positives = 52/89 (58%)
Query: 23 MGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSNL-IQD 81
MG+D++L+ELLWQNG VV+ +Q +KPS + P+ + + S + NL IQ+
Sbjct: 33 MGEDDDLMELLWQNGQVVVQNQRLHTKKPS--SSPPKLLPSMDPQQQPS--SDQNLFIQE 88
Query: 82 DETVSWIHCPIEDSFEKDFYSQL-FSELP 109
DE SW+H P+ D DF S L FS P
Sbjct: 89 DEMTSWLHYPLRDD---DFCSDLLFSAAP 114
>UNIPROTKB|Q8GRJ1 [details] [associations]
symbol:OJ1343_B12.103 "Transcription factor BHLH9-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P61244 EMBL:AP003824 EMBL:AP004010
Uniprot:Q8GRJ1
Length = 417
Score = 330 (121.2 bits), Expect = 8.1e-37, Sum P(2) = 8.1e-37
Identities = 103/297 (34%), Positives = 143/297 (48%)
Query: 226 SHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTS 285
S CGSN V ++ A + +DD+ +P E + E P S
Sbjct: 137 SICGSNAV-----VAPALPADDDDDI-DAAAPREEEEEEEEGPGAARAAGASSSG---GS 187
Query: 286 KQSTGDNSL-KRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRR 344
+G L KR + VDS SE A E+ + ++R + RR+RAAEVHNLSERRR
Sbjct: 188 GSGSGSYPLFKRGREELVDS--LSEVAD-ET----RPSKRPAAKRRTRAAEVHNLSERRR 240
Query: 345 RDRINEKMRALQELIPHCNKTDKASMLDEAIEYXXXXXXXXXXXXVMWMGSGMAPLMFPG 404
RDRINEK+RALQEL+PHCNKTDKAS+LDEAIEY +MWM +G+ P+MFPG
Sbjct: 241 RDRINEKLRALQELVPHCNKTDKASILDEAIEYLKSLQMQVQ---IMWMTTGIVPMMFPG 297
Query: 405 MQHYMSRXXXXXXXXXLPSVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQN 464
M +P +++ M+ + N+ + +N + +
Sbjct: 298 THQLMPPMGMGLNTACMPGA-QAQGLNQMQRTTYYMNNS-LPNQMPQIPSPAMNAPSVPD 355
Query: 465 QMQNSNFTEQYARYMGFH---PMQANSQPMNMFRFGSPTM-QNQIVSLPSSSCVPFS 517
MQN N R H + A +Q +F +GS QN+I L S + +P S
Sbjct: 356 DMQNDNRIRG-PRNPFLHCNDTLTATAQVPGLFTYGSQIAEQNEIQELLSGAVIPSS 411
Score = 86 (35.3 bits), Expect = 8.1e-37, Sum P(2) = 8.1e-37
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 18 NQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPS 52
NQ KP+ D ELVELLWQ+G VV + AQT+ + S
Sbjct: 18 NQKKPLS-DGELVELLWQDGGVV--AHAQTRHRSS 49
>TAIR|locus:2012345 [details] [associations]
symbol:PIF3 "AT1G09530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009639 "response to red or far red
light" evidence=IMP] [GO:0010017 "red or far-red light signaling
pathway" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0031539
"positive regulation of anthocyanin metabolic process"
evidence=IMP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=IMP] [GO:0009704 "de-etiolation" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA] [GO:0009630
"gravitropism" evidence=RCA] [GO:0007165 "signal transduction"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC003970
GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0010017
GO:GO:0009704 GO:GO:0009740 GO:GO:0031539 EMBL:AF100166
EMBL:AF251693 EMBL:AF088280 EMBL:AK117255 EMBL:EF193482
EMBL:EF193483 EMBL:EF193484 EMBL:EF193485 EMBL:EF193486
EMBL:EF193487 EMBL:EF193488 EMBL:EF193489 EMBL:EF193490
EMBL:EF193491 EMBL:EF193492 EMBL:EF193493 EMBL:EF193494
EMBL:EF193495 EMBL:EF193496 IPI:IPI00530297 PIR:H86228
RefSeq:NP_172424.1 RefSeq:NP_849626.1 UniGene:At.10926
ProteinModelPortal:O80536 SMR:O80536 DIP:DIP-33892N IntAct:O80536
STRING:O80536 EnsemblPlants:AT1G09530.1 EnsemblPlants:AT1G09530.2
GeneID:837479 KEGG:ath:AT1G09530 TAIR:At1g09530 eggNOG:NOG285764
InParanoid:O80536 KO:K12126 OMA:WENGQIS PhylomeDB:O80536
ProtClustDB:CLSN2679266 Genevestigator:O80536 GermOnline:AT1G09530
Uniprot:O80536
Length = 524
Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
Identities = 136/419 (32%), Positives = 193/419 (46%)
Query: 27 NELVELLWQNGHVVLSSQAQTQRK---PSLNHNEPRQV---QKQTLRGSGSCGNSS---N 77
+E+VEL+W+NG + SQ+ R P N + R++ K T+ S
Sbjct: 27 DEVVELVWENGQISTQSQSSRSRNIPPPQANSSRAREIGNGSKTTMVDEIPMSVPSLMTG 86
Query: 78 LIQDDETVSWI-HCPIEDSFEKDFYSQLFSELPPS---GPMEVDKHTRQLREEKMVKFDP 133
L QDD+ V W+ H P D + DF + S + + M V++ L + + +
Sbjct: 87 LSQDDDFVPWLNHHPSLDGYCSDFLRDVSSPVTVNEQESDMAVNQTAFPLFQRRKDGNES 146
Query: 134 PGAVTSSQHPNV-NHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGK--LVNFSQSTAP 190
A +SSQ+ +HS+ + +P + + L K LVNFS P
Sbjct: 147 APAASSSQYNGFQSHSLYGSDRARDLPSQQTNPDRFTQTQEPLITSNKPSLVNFSHFLRP 206
Query: 191 PKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDD 250
+ D K + V + ++ S ++V L+ S AS++ ++
Sbjct: 207 ATFAKTTNNNLHDTKEKSPQSPPNVFQTRVLGAKDSE---DKV---LNESVASATPKDNQ 260
Query: 251 VRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTSKQSTGDNSLKRKSRDAVDSECQSEA 310
+IS K + E V + S+ + SLKRK + D +C SE
Sbjct: 261 KACLISEDSCRKDQESEKAVVCSSVGSGNSLDGPSESPS--LSLKRKHSNIQDIDCHSED 318
Query: 311 AGFESGAGNKTA--QRSG-SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDK 367
ESG G K A R+G +RSR+AEVHNLSERRRRDRINEKMRALQELIP+CNK DK
Sbjct: 319 VEEESGDGRKEAGPSRTGLGSKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKVDK 378
Query: 368 ASMLDEAIEYXXXXXXXXXXXXVMWMGSG--MAP-LMFP-GMQHYMSRXXXXXXXXXLP 422
ASMLDEAIEY +M M SG + P +MFP GM HY + +P
Sbjct: 379 ASMLDEAIEYLKSLQLQVQ---IMSMASGYYLPPAVMFPPGMGHYPAAAAAMAMGMGMP 434
>TAIR|locus:4010713915 [details] [associations]
symbol:AT4G28811 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
HOGENOM:HOG000240264 EMBL:AJ519811 IPI:IPI00518617 PIR:H85335
PIR:T04518 RefSeq:NP_001078462.1 UniGene:At.46149
ProteinModelPortal:Q8GT73 SMR:Q8GT73 PRIDE:Q8GT73
EnsemblPlants:AT4G28811.1 GeneID:5008170 KEGG:ath:AT4G28811
TAIR:At4g28811 eggNOG:NOG314238 PhylomeDB:Q8GT73
ProtClustDB:CLSN2699107 Genevestigator:Q8GT73 Uniprot:Q8GT73
Length = 544
Score = 240 (89.5 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
Identities = 72/201 (35%), Positives = 99/201 (49%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
G + A S S +RSRAA++HNLSERRRR+RINE+M+ LQEL+P C KTDK SML++ IEY
Sbjct: 343 GTEEAHGSTSRKRSRAADMHNLSERRRRERINERMKTLQELLPRCRKTDKVSMLEDVIEY 402
Query: 378 XXXXXXXXXXXXVMWMGSGMAP-LMFPG-MQHYMSRXXXXXXXXXLP---------SVTN 426
+M MG GM P +M G Q +M P +
Sbjct: 403 VKSLQLQIQ---MMSMGHGMMPPMMHEGNTQQFMPHMAMGMKGMNRPPPFVPFPGKTFPR 459
Query: 427 PMHFSRV----PLVDQSMSMAQAQNRAVMCQASV-LNPVNYQNQMQNSNFTEQYARYMGF 481
P H + V P + QA + + + S+ NPV NQ + + Y++++G
Sbjct: 460 PGHMAGVGPSYPALRYPFPDTQASDLSRVHVPSLHSNPV--PNQPRFPAYINPYSQFVGL 517
Query: 482 HPMQANSQPMNMFRFGSPTMQ 502
H MQ P+ G PT Q
Sbjct: 518 HQMQQPPLPLQ----GQPTSQ 534
Score = 87 (35.7 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 26 DNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNS-SNL-IQDDE 83
++++VELLW++G VV S Q Q P + ++T+ S N+ IQ+DE
Sbjct: 108 EDDVVELLWKSGQVVQSIQTQRPIPPPIFRGSGSGGGEETVLPLPPLHPSHQNIFIQEDE 167
Query: 84 TVSWIHCPIEDSF 96
SW++ P+ +
Sbjct: 168 MASWLYHPLRQDY 180
Score = 68 (29.0 bits), Expect = 6.9e-20, Sum P(2) = 6.9e-20
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 23 MGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ-VQKQTLRGSGSCG-------- 73
MG+D ++VELLW NG VV +SQ Q +PS P + + + GSG
Sbjct: 1 MGED-DIVELLW-NGQVVRTSQPQ---RPSSGKPSPTPPILRGSGSGSGEENAPLPLPLL 55
Query: 74 ------NSSNL-IQDDETVSWIHCPIED-SFEKDFYSQLFSELPPSGPM 114
+ NL I+++E SW+H + + Q LPP P+
Sbjct: 56 QPPRPLHHQNLFIREEEMSSWLHYSYTGVTSTPATHPQSSVSLPPPPPI 104
>UNIPROTKB|Q5NAE0 [details] [associations]
symbol:P0498A12.33 "Putative BP-5 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003020
ProteinModelPortal:Q5NAE0 Gramene:Q5NAE0 Uniprot:Q5NAE0
Length = 565
Score = 263 (97.6 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 67/131 (51%), Positives = 79/131 (60%)
Query: 285 SKQSTGDNSLKR--KSRDAVDSEC---QSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNL 339
S G + L R K + +EC Q + E G K+ RS +RSR AEVHNL
Sbjct: 262 SGNGAGSDELWRQQKRKCQAQAECSASQDDDLDDEPGVLRKSGTRS--TKRSRTAEVHNL 319
Query: 340 SERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYXXXXXXXXXXXXVMWMGSGMA- 398
SERRRRDRINEKMRALQELIP+CNK DKASMLDEAIEY +M MG+G+
Sbjct: 320 SERRRRDRINEKMRALQELIPNCNKIDKASMLDEAIEYLKTLQLQVQ---MMSMGTGLCI 376
Query: 399 -PLMFP-GMQH 407
P++ P MQH
Sbjct: 377 PPMLLPTAMQH 387
Score = 59 (25.8 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 81 DDETVSWIHCPIEDSFEK---------DFYSQLFSEL 108
DD+TV WIH PI D + D+ S FSEL
Sbjct: 21 DDDTVPWIHYPIIDDEDAAAPAALAAADYGSDFFSEL 57
>TAIR|locus:2117773 [details] [associations]
symbol:AT4G28790 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL161573
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353 EMBL:BT015828
EMBL:BT020214 IPI:IPI00521625 IPI:IPI00529771 IPI:IPI00915578
PIR:T04520 RefSeq:NP_194608.3 RefSeq:NP_974634.1 UniGene:At.31988
ProteinModelPortal:Q9SVU6 SMR:Q9SVU6 PRIDE:Q9SVU6
EnsemblPlants:AT4G28790.1 GeneID:829000 KEGG:ath:AT4G28790
TAIR:At4g28790 HOGENOM:HOG000240264 InParanoid:Q9SVU6
PhylomeDB:Q9SVU6 ProtClustDB:CLSN2680993 Genevestigator:Q9SVU6
Uniprot:Q9SVU6
Length = 413
Score = 220 (82.5 bits), Expect = 9.8e-21, Sum P(2) = 9.8e-21
Identities = 74/213 (34%), Positives = 100/213 (46%)
Query: 205 KRSGNLTQGEVREC-SMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKT 263
++ GN+ G V S T+ SS S + + SRA+ +G V RGK
Sbjct: 156 RQRGNIFLGGVEAVPSNSTLLSSATESIPATHGTE-SRATVTGGVSRTFAVPGLGPRGKA 214
Query: 264 ETIEPTVTXXXXXXXXXFNRTSKQSTGDNSL----KRKSRDAVDSECQSEAAGFESGAGN 319
IE T +Q + + KRK+R+ + E Q G
Sbjct: 215 VAIETAGTQSWGLCKAETEPVQRQPATETDITDERKRKTREETNVENQ----------GT 264
Query: 320 KTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYXX 379
+ A+ S S +RSRAA +H LSERRRR +INE M+ALQEL+P C KTD++SMLD+ IEY
Sbjct: 265 EEARDSTSSKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVK 324
Query: 380 XXXXXXXXXXVMWMGSGMAP-LMFPG--MQHYM 409
MG M P +M+ G Q YM
Sbjct: 325 SLQSQIQMFS---MGHVMIPPMMYAGNIQQQYM 354
Score = 92 (37.4 bits), Expect = 9.8e-21, Sum P(2) = 9.8e-21
Identities = 42/118 (35%), Positives = 57/118 (48%)
Query: 16 ISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSC--- 72
IS + MG+D ++VELL ++ VV SSQ QT PS +P + LRGSGS
Sbjct: 15 ISPEKYIMGED-DIVELLGKSSQVVTSSQTQT---PSC---DPPLI----LRGSGSGDGE 63
Query: 73 GNS-------------SNLIQDDETVSWIHCPIEDSFEKDFYSQL-FSELPPSGPMEV 116
GN S IQ+DE SW+H P + YSQL +S + + P +
Sbjct: 64 GNGPLPQPPPPLYHQQSLFIQEDEMASWLHQPNRQDY---LYSQLLYSGVASTHPQSL 118
>UNIPROTKB|Q7FA23 [details] [associations]
symbol:OSJNBa0058K23.6 "Os04g0618600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP008210
EMBL:CM000141 EMBL:AL662970 RefSeq:NP_001053893.1 UniGene:Os.4548
EnsemblPlants:LOC_Os04g52770.1 GeneID:4337015 KEGG:osa:4337015
eggNOG:NOG275283 OMA:RSAEFHN ProtClustDB:CLSN2695118 Uniprot:Q7FA23
Length = 181
Score = 248 (92.4 bits), Expect = 1.9e-20, P = 1.9e-20
Identities = 51/88 (57%), Positives = 63/88 (71%)
Query: 322 AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYXXXX 381
A+R RRSR+AE HN SERRRRDRINEK++ALQEL+P+C KTDK SMLDEAI+Y
Sbjct: 3 ARRPTPTRRSRSAEFHNFSERRRRDRINEKLKALQELLPNCTKTDKVSMLDEAIDYLKSL 62
Query: 382 XXXXXXXXVMWMGSGMAPLMFPGMQHYM 409
++ MG GMAP++ P +Q YM
Sbjct: 63 QLQLQ---MLVMGKGMAPVVPPELQQYM 87
>UNIPROTKB|Q5VRS4 [details] [associations]
symbol:OSJNBa0015I14.14 "Basic helix-loop-helix protein
SPATULA-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 EMBL:CM000143
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AP002536 KEGG:dosa:Os06t0164400-01
Uniprot:Q5VRS4
Length = 315
Score = 237 (88.5 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 52/75 (69%), Positives = 59/75 (78%)
Query: 306 CQSEAAGF---ESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
C SEA G E+ AG + SGS +RSRAAEVHNLSE+RRR +INEKM+ALQ LIP+
Sbjct: 75 CDSEAGGSSEPEAAAGARPRGGSGS-KRSRAAEVHNLSEKRRRSKINEKMKALQSLIPNS 133
Query: 363 NKTDKASMLDEAIEY 377
NKTDKASMLDEAIEY
Sbjct: 134 NKTDKASMLDEAIEY 148
>TAIR|locus:4010713916 [details] [associations]
symbol:AT4G28815 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
EMBL:AL161573 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353
PIR:H85335 PIR:T04518 EMBL:AJ577586 IPI:IPI00530422
RefSeq:NP_001078463.1 UniGene:At.71260 ProteinModelPortal:Q7XHI7
SMR:Q7XHI7 EnsemblPlants:AT4G28815.1 GeneID:5008171
KEGG:ath:AT4G28815 TAIR:At4g28815 eggNOG:NOG83291 PhylomeDB:Q7XHI7
Genevestigator:Q7XHI7 Uniprot:Q7XHI7
Length = 307
Score = 203 (76.5 bits), Expect = 4.9e-19, Sum P(3) = 4.9e-19
Identities = 44/93 (47%), Positives = 58/93 (62%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
G + A+ S S +RSRAAE+HNL+ERRRR++INE+M+ LQ+LIP CNK+ K SML++ IEY
Sbjct: 136 GTEEARGSTSRKRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVIEY 195
Query: 378 XXXXXXXXXXXXV-MWMGSGMAP--LMFPGMQH 407
M MG P + FP H
Sbjct: 196 VKSLEMQINQFMPHMAMGMNQPPAYIPFPSQAH 228
Score = 64 (27.6 bits), Expect = 4.9e-19, Sum P(3) = 4.9e-19
Identities = 33/102 (32%), Positives = 46/102 (45%)
Query: 24 GQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGSGSCGNSSN------ 77
G+D ++VELL + G QTQ PS ++P + LRGSGS G N
Sbjct: 22 GED-DIVELLCKIG--------QTQI-PS---SDPLPI----LRGSGSGGREENTPLPPP 64
Query: 78 ------LIQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGP 113
IQ+DE SW H P+ + S+L++ P P
Sbjct: 65 LPHQNLFIQEDEMSSWPHHPLRQDY---LCSELYASTPAPHP 103
Score = 49 (22.3 bits), Expect = 4.9e-19, Sum P(3) = 4.9e-19
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 450 VMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQANSQP 490
V Q+ NPV+ Q QM Y +++G H MQ + P
Sbjct: 254 VWLQSPQPNPVSNQPQMN------PYGQFVGHHQMQQSLPP 288
>TAIR|locus:2117788 [details] [associations]
symbol:AT4G28800 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AL161573
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL035353 IPI:IPI00517558
IPI:IPI01020410 PIR:T04519 RefSeq:NP_194609.5 UniGene:At.71648
ProteinModelPortal:Q9SVU7 SMR:Q9SVU7 GeneID:829001
KEGG:ath:AT4G28800 TAIR:At4g28800 InParanoid:Q9SVU7
Genevestigator:Q9SVU7 Uniprot:Q9SVU7
Length = 445
Score = 210 (79.0 bits), Expect = 6.3e-19, Sum P(2) = 6.3e-19
Identities = 64/191 (33%), Positives = 90/191 (47%)
Query: 307 QSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD 366
+S+ E G + A+ S S +RSR AE+HNL+ERRRR++INEKM+ LQ+LIP CNK+
Sbjct: 230 ESKLKAREETHGTEEARGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKST 289
Query: 367 KASMLDEAIEYXXXXXXXXXXXXVMWMGSGMAPLMFPGMQHYMSRXXXXXXXXXLPSVTN 426
K S LD+AIEY M +G P M M+R P +
Sbjct: 290 KVSTLDDAIEYVKSLQSQIQGMMSPMMNAGNTQQFMPHMAMDMNRPPPFIP---FPGTSF 346
Query: 427 PM--HFSRV----PLVDQSMSMAQAQNRA-VMCQASVLNPVNYQNQMQNSNFTEQYARYM 479
PM + V P Q + + V + NPV+ NQ Q + Y+++
Sbjct: 347 PMPAQMAGVGPSYPAPRYPFPNIQTFDPSRVRLPSPQPNPVS--NQPQFPAYMNPYSQFA 404
Query: 480 GFHPMQANSQP 490
G H +Q P
Sbjct: 405 GPHQLQQPPPP 415
Score = 88 (36.0 bits), Expect = 6.3e-19, Sum P(2) = 6.3e-19
Identities = 28/94 (29%), Positives = 46/94 (48%)
Query: 25 QDNELVELLWQNGHVVLSSQAQTQR---KPSLNHN-EPRQVQKQTLRGSGSCGNSSNL-I 79
+++++VELLWQ+G VV ++Q Q P L + R + L + NL I
Sbjct: 18 REDDIVELLWQSGQVVGTNQTHRQSYDPPPILRGSGSGRGEENAPLSQPPPHLHQQNLFI 77
Query: 80 QDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGP 113
Q+ E SW+H ++ F S+L + P + P
Sbjct: 78 QEGEMYSWLHHSYRQNY---FCSELLNSTPATHP 108
>TAIR|locus:2155503 [details] [associations]
symbol:ALC "AT5G67110" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0010047 "fruit dehiscence" evidence=IMP]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0010047 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB020742 EMBL:BT028946 EMBL:AF488605 IPI:IPI00537617
IPI:IPI00846166 IPI:IPI00846501 RefSeq:NP_001078810.1
RefSeq:NP_001078811.1 RefSeq:NP_201512.1 UniGene:At.28825
HSSP:P36956 ProteinModelPortal:Q9FHA2 SMR:Q9FHA2 IntAct:Q9FHA2
STRING:Q9FHA2 EnsemblPlants:AT5G67110.1 GeneID:836846
KEGG:ath:AT5G67110 TAIR:At5g67110 eggNOG:NOG329583
HOGENOM:HOG000033902 InParanoid:Q9FHA2 OMA:HTRINET PhylomeDB:Q9FHA2
ProtClustDB:CLSN2686902 Genevestigator:Q9FHA2 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 Uniprot:Q9FHA2
Length = 210
Score = 204 (76.9 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 47/100 (47%), Positives = 61/100 (61%)
Query: 304 SECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN 363
SE + FE A++ S +R+ A+ HNLSE++RR +INEKM+ALQ+LIP+ N
Sbjct: 67 SETGQDKYAFEHKRSG--AKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSN 124
Query: 364 KTDKASMLDEAIEYXXXXXXXXXXXXVMWMGSGMAPLMFP 403
KTDKASMLDEAIEY VM G G+ P+ P
Sbjct: 125 KTDKASMLDEAIEYLKQLQLQVQTLAVM-NGLGLNPMRLP 163
Score = 39 (18.8 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 15/50 (30%), Positives = 18/50 (36%)
Query: 91 PIEDSFE-KDFYSQLFSELPPSGPMEVDKHTRQLREEKMVKFDPPGAVTS 139
P S E F Q+ S P + P K T E GAV+S
Sbjct: 12 PPSSSDELSSFLRQILSRTPTAQPSSPPKSTNVSSAETFFPSVSGGAVSS 61
>TAIR|locus:2115080 [details] [associations]
symbol:SPT "AT4G36930" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009908 "flower
development" evidence=NAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;TAS]
[GO:0009409 "response to cold" evidence=IMP] [GO:0010114 "response
to red light" evidence=IMP] [GO:0010187 "negative regulation of
seed germination" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0048440 "carpel development" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007623 "circadian
rhythm" evidence=IEP] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677
GO:GO:0007623 GO:GO:0009409 GO:GO:0003700 GO:GO:0006351
GO:GO:0010114 GO:GO:0010187 GO:GO:0048440 GO:GO:0010154
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:Z99707 EMBL:AL161590 EMBL:AF319540
EMBL:AK229267 EMBL:BT026462 IPI:IPI00541204 PIR:B85436
RefSeq:NP_568010.1 UniGene:At.4639 ProteinModelPortal:Q9FUA4
SMR:Q9FUA4 IntAct:Q9FUA4 STRING:Q9FUA4 EnsemblPlants:AT4G36930.1
GeneID:829847 KEGG:ath:AT4G36930 TAIR:At4g36930 eggNOG:NOG276771
HOGENOM:HOG000090429 InParanoid:Q9FUA4 OMA:NAPEMIN PhylomeDB:Q9FUA4
ProtClustDB:CLSN2917674 Genevestigator:Q9FUA4 GermOnline:AT4G36930
Uniprot:Q9FUA4
Length = 373
Score = 234 (87.4 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 57/126 (45%), Positives = 72/126 (57%)
Query: 284 TSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG-----SCRRSRAAEVHN 338
+S +S+ + + +C+SE G E+ + +SG S +R RAAEVHN
Sbjct: 145 SSGTRVSSSSVGASGNETDEYDCESEEGG-EAVVDEAPSSKSGPSSRSSSKRCRAAEVHN 203
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYXXXXXXXXXXXXVMWMGSGMA 398
LSE+RRR RINEKM+ALQ LIP+ NKTDKASMLDEAIEY M G +
Sbjct: 204 LSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLT-MRNGINLH 262
Query: 399 PLMFPG 404
PL PG
Sbjct: 263 PLCLPG 268
>UNIPROTKB|Q948F6 [details] [associations]
symbol:OSJNBa0049O12.18 "Putative SPATULA" species:4530
"Oryza sativa" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 InterPro:IPR024097 InterPro:IPR024102
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AC069158
ProteinModelPortal:Q948F6 Gramene:Q948F6 Genevestigator:Q948F6
Uniprot:Q948F6
Length = 298
Score = 216 (81.1 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 48/74 (64%), Positives = 57/74 (77%)
Query: 306 CQSEAA--GFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN 363
C+SE A ES + A+ G +RSRAAEVHNLSE+RRR RINEKM+ALQ LIP+ +
Sbjct: 6 CESEEALGSSESEQPTRPARPRG--KRSRAAEVHNLSEKRRRSRINEKMKALQSLIPNSS 63
Query: 364 KTDKASMLDEAIEY 377
KTDKASMLD+AIEY
Sbjct: 64 KTDKASMLDDAIEY 77
>TAIR|locus:2041369 [details] [associations]
symbol:PIL1 "phytochrome interacting factor 3-like 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009641 "shade
avoidance" evidence=IEP] [GO:0010017 "red or far-red light
signaling pathway" evidence=IEP;IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 EMBL:AC004411 Gene3D:4.10.280.10 SUPFAM:SSF47459
GO:GO:0010017 GO:GO:0009641 HOGENOM:HOG000115543
ProtClustDB:CLSN2680935 EMBL:AB090873 EMBL:AY219127 EMBL:AY954840
IPI:IPI00545843 PIR:T02190 RefSeq:NP_182220.2 UniGene:At.36425
ProteinModelPortal:Q8L5W8 SMR:Q8L5W8 IntAct:Q8L5W8 STRING:Q8L5W8
PRIDE:Q8L5W8 EnsemblPlants:AT2G46970.1 GeneID:819311
KEGG:ath:AT2G46970 TAIR:At2g46970 eggNOG:NOG291407
InParanoid:Q8L5W8 OMA:MELVCEN PhylomeDB:Q8L5W8
Genevestigator:Q8L5W8 Uniprot:Q8L5W8
Length = 416
Score = 202 (76.2 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 53/135 (39%), Positives = 73/135 (54%)
Query: 281 FNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQ-----RSGSCRRSRAAE 335
F+R + + SLKRK D + E + + + + Q R +R R+ E
Sbjct: 173 FSRGTSRDLSCCSLKRKYGDIEEEESTYLSNNSDDESDDAKTQVHARTRKPVTKRKRSTE 232
Query: 336 VHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYXXXXXXXXXXXXVMWMGS 395
VH L ER+RRD N+KMRALQ+L+P+C K DKAS+LDEAI+Y +M MG+
Sbjct: 233 VHKLYERKRRDEFNKKMRALQDLLPNCYKDDKASLLDEAIKYMRTLQLQVQ---MMSMGN 289
Query: 396 GMA--PLMFPGMQHY 408
G+ P M P M HY
Sbjct: 290 GLIRPPTMLP-MGHY 303
Score = 52 (23.4 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 15 PISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTL 66
P SN +KP +D + +EL+ +NG ++ R+P N + +Q ++Q+L
Sbjct: 18 PSSN-IKPKLKDEDYMELVCENGQILAKI-----RRPKNNGSFQKQ-RRQSL 62
>TAIR|locus:2126876 [details] [associations]
symbol:UNE10 "AT4G00050" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009567
"double fertilization forming a zygote and endosperm" evidence=IMP]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0009506 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:AL161471 HSSP:P22415 GO:GO:0009567
EMBL:AF069299 EMBL:AF488561 EMBL:AK117229 EMBL:BT025971
IPI:IPI00517893 PIR:T01333 RefSeq:NP_191916.3 UniGene:At.44779
ProteinModelPortal:Q8GZ38 SMR:Q8GZ38 IntAct:Q8GZ38
EnsemblPlants:AT4G00050.1 GeneID:828175 KEGG:ath:AT4G00050
TAIR:At4g00050 eggNOG:NOG239145 HOGENOM:HOG000084918
InParanoid:Q8GZ38 OMA:MMSRMNM PhylomeDB:Q8GZ38
ProtClustDB:CLSN2690671 Genevestigator:Q8GZ38 Uniprot:Q8GZ38
Length = 399
Score = 206 (77.6 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 54/127 (42%), Positives = 69/127 (54%)
Query: 281 FNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG-SCRRSRAAEVHNL 339
F TS S DN++ D DS C S E K +S S +RSRAA +HN
Sbjct: 168 FTSTSMGSH-DNTI-----DDHDSVCHSRPQ-MEDEEEKKAGGKSSVSTKRSRAAAIHNQ 220
Query: 340 SERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYXXXXXXXXXXXXVMWMGSGMAP 399
SER+RRD+IN++M+ LQ+L+P+ +KTDKASMLDE IEY M M S M P
Sbjct: 221 SERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVSMMSRMNMPSMMLP 280
Query: 400 LMFPGMQ 406
+ Q
Sbjct: 281 MAMQQQQ 287
Score = 45 (20.9 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 26 DNELVELLWQNGHVVL 41
D E+ EL W+NG + L
Sbjct: 33 DYEVAELTWENGQLGL 48
>TAIR|locus:2047555 [details] [associations]
symbol:LRL1 "AT2G24260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0080147
"root hair cell development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC005967
HOGENOM:HOG000239571 GO:GO:0080147 EMBL:AF488599 EMBL:AK176370
EMBL:AK176390 EMBL:BT026512 IPI:IPI00528969 PIR:E84634
RefSeq:NP_180003.1 UniGene:At.20792 ProteinModelPortal:Q9ZUG9
SMR:Q9ZUG9 EnsemblPlants:AT2G24260.1 GeneID:816961
KEGG:ath:AT2G24260 TAIR:At2g24260 eggNOG:NOG284260
InParanoid:Q9ZUG9 OMA:STATCHS PhylomeDB:Q9ZUG9
ProtClustDB:CLSN2683027 Genevestigator:Q9ZUG9 Uniprot:Q9ZUG9
Length = 350
Score = 174 (66.3 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 37/93 (39%), Positives = 59/93 (63%)
Query: 287 QSTGDNSLKRKSRDAVDSECQSEAAGFESG--AGNKTAQRSGSCRRSRAAEVHNLSERRR 344
Q +G + ++ + ++ Q+ A+ G A ++ RR +A + H+++ER R
Sbjct: 97 QGSGGGLMNQQGQTQTQTQPQASASTATGGTVAAPPQSRTKIRARRGQATDPHSIAERLR 156
Query: 345 RDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
R+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y
Sbjct: 157 RERIAERMKALQELVPNGNKTDKASMLDEIIDY 189
Score = 52 (23.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 15/39 (38%), Positives = 18/39 (46%)
Query: 74 NSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELP-PS 111
NSS L + S I P +DF Q+FS P PS
Sbjct: 3 NSSLLTPSSSSSSHIQTPSTTFDHEDFLDQIFSSAPWPS 41
>TAIR|locus:2163163 [details] [associations]
symbol:PIF7 "AT5G61270" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0009416
"response to light stimulus" evidence=IDA] [GO:0009704
"de-etiolation" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016607
GO:GO:0003700 GO:GO:0006351 GO:GO:0003690 GO:GO:0009585
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB010073 HSSP:P22415
GO:GO:0009704 EMBL:AF488604 EMBL:BX831447 EMBL:AY568656
EMBL:AJ630484 EMBL:AK220640 IPI:IPI00537261 IPI:IPI00656604
RefSeq:NP_001032117.1 RefSeq:NP_200935.2 UniGene:At.29114
ProteinModelPortal:Q570R7 SMR:Q570R7 IntAct:Q570R7 STRING:Q570R7
EnsemblPlants:AT5G61270.1 GeneID:836248 KEGG:ath:AT5G61270
TAIR:At5g61270 eggNOG:NOG286182 HOGENOM:HOG000097081
InParanoid:Q9FLK6 OMA:HNESERR PhylomeDB:Q570R7
ProtClustDB:CLSN2681114 Genevestigator:Q570R7 Uniprot:Q570R7
Length = 366
Score = 181 (68.8 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 41/89 (46%), Positives = 54/89 (60%)
Query: 289 TGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRI 348
TGD R + D+E + E+G N G RR RAA +HN SERRRRDRI
Sbjct: 131 TGDRDYFRSGSETQDTEGDEQETRGEAGRSN------G--RRGRAAAIHNESERRRRDRI 182
Query: 349 NEKMRALQELIPHCNKTDKASMLDEAIEY 377
N++MR LQ+L+P +K DK S+LD+ IE+
Sbjct: 183 NQRMRTLQKLLPTASKADKVSILDDVIEH 211
Score = 41 (19.5 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 31 ELLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRG 68
EL W+NG + + + +P+ ++N P + Q+L G
Sbjct: 8 ELTWENGQLTVHGLGD-EVEPTTSNN-P--IWTQSLNG 41
>UNIPROTKB|Q6AUE8 [details] [associations]
symbol:OSJNBb0029I19.4 "Os03g0639300 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
GO:GO:0005634 EMBL:AP008209 EMBL:AC128646 RefSeq:NP_001173558.1
UniGene:Os.19229 STRING:Q6AUE8 GeneID:9270162 KEGG:osa:9270162
Uniprot:Q6AUE8
Length = 307
Score = 174 (66.3 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 64/213 (30%), Positives = 94/213 (44%)
Query: 1 MNPCIPDWNFEGDIPISNQMKPMGQDNELVELLWQNGHVVLSSQAQTQRKPSLNHNEPRQ 60
MN +PDW+ GD + +G+D+ L+ELLW NGHVV+ SQ ++ P PR
Sbjct: 1 MNQFVPDWSNMGDAS-----RTLGEDDNLIELLWCNGHVVMQSQNHHRKLP------PRP 49
Query: 61 VQKQTLRGSGSCGNSSNLIQDDETVSWIHCPIEDSFEKDFYSQLFSELP--------PSG 112
+K ++ +Q+DE W + DS EKD +S LF E P P+G
Sbjct: 50 PEKA----------AAAAVQEDEAGLWFPFALADSLEKDIFSDLFYEAPVAATAEAAPAG 99
Query: 113 P-MEVDKHTRQLR-EEKMVKFDPPGAVTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAP 170
P D + + + M + + G +S+ P + P NA R + A
Sbjct: 100 PGAGADGEGKTCKGDAAMAEEERGGPGAASEAPR--ELMPPPKSTNASCS-RQQTMSLAD 156
Query: 171 QNKNLGDLGKLVNFSQST---APPKGELGPCSG 200
N GDL +LV +S+ A K E G G
Sbjct: 157 GGDNAGDLSELVRARRSSGGAARRKAEAGGGGG 189
Score = 129 (50.5 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 72/268 (26%), Positives = 91/268 (33%)
Query: 79 IQDDETVSWIHCPIEDSFEKDFYSQLFSELPPSGPMEVDKHTRQLREEKMVKFDPPGAVT 138
+Q+DE W + DS EKD +S LF E P + E + K G
Sbjct: 58 VQEDEAGLWFPFALADSLEKDIFSDLFYEAPVAATAEAAPAGPGAGADGEGK-TCKGDAA 116
Query: 139 SSQHPNVNHSVVPELQRNAMPPP--------RFEVHDAAPQNKNLGDLGKLVNFSQSTAP 190
++ E R MPPP R + A N GDL +LV +S+
Sbjct: 117 MAEEERGGPGAASEAPRELMPPPKSTNASCSRQQTMSLADGGDNAGDLSELVRARRSSG- 175
Query: 191 PKGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDD 250
G RK G + +GSS CGSNQV + AS G
Sbjct: 176 ---------GAARRKAEAGGGGGGASSSMLSAIGSSICGSNQV--QVQQRTASEPG---- 220
Query: 251 VRKVISPSERGKTETIE------------PTVTXXXXXXXXXFNRTSKQ---STGDNSLK 295
R+ PS G I TV F T+ ST + S K
Sbjct: 221 -RRGAPPSAVGSANAIPCGGRDHGHGHEATTVASSSGRSNCCFGTTTTTEPTSTSNRSSK 279
Query: 296 RKSRDAV-DSECQSEAAGFESGAGNKTA 322
RK D DSE SE S N+ A
Sbjct: 280 RKRLDTTEDSESPSEVGVLPSNT-NRDA 306
>TAIR|locus:2126624 [details] [associations]
symbol:LRL2 "AT4G30980" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0080147
"root hair cell development" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL022198
EMBL:AL161578 HOGENOM:HOG000239571 GO:GO:0080147
ProtClustDB:CLSN2683027 EMBL:AF488601 IPI:IPI00524968 PIR:G85362
RefSeq:NP_194827.2 UniGene:At.31786 ProteinModelPortal:Q8S3D5
SMR:Q8S3D5 EnsemblPlants:AT4G30980.1 GeneID:829223
KEGG:ath:AT4G30980 TAIR:At4g30980 eggNOG:NOG295725
InParanoid:O65552 OMA:GGSHENT PhylomeDB:Q8S3D5
Genevestigator:Q8S3D5 Uniprot:Q8S3D5
Length = 310
Score = 171 (65.3 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 40/94 (42%), Positives = 56/94 (59%)
Query: 288 STGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGS----CRRSRAAEVHNLSERR 343
STG ++ QS+A + G TAQ RR +A + H+++ER
Sbjct: 89 STGSLPFHLPQGSGGQTQTQSQATA-SATTGGATAQPQTKPKVRARRGQATDPHSIAERL 147
Query: 344 RRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
RR+RI E+M++LQEL+P+ NKTDKASMLDE I+Y
Sbjct: 148 RRERIAERMKSLQELVPNGNKTDKASMLDEIIDY 181
>TAIR|locus:2147760 [details] [associations]
symbol:LRL3 "AT5G58010" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0080147 "root hair cell development"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HSSP:P36956 HOGENOM:HOG000239571 GO:GO:0080147
EMBL:AB026635 EMBL:AF488614 IPI:IPI00540554 RefSeq:NP_200609.1
UniGene:At.29300 ProteinModelPortal:Q9LSQ3 SMR:Q9LSQ3 PRIDE:Q9LSQ3
EnsemblPlants:AT5G58010.1 GeneID:835913 KEGG:ath:AT5G58010
TAIR:At5g58010 eggNOG:NOG252939 InParanoid:Q9LSQ3 OMA:TEQRVAK
PhylomeDB:Q9LSQ3 ProtClustDB:CLSN2916934 Genevestigator:Q9LSQ3
Uniprot:Q9LSQ3
Length = 297
Score = 167 (63.8 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 31/49 (63%), Positives = 42/49 (85%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
RR +A + H+++ER RR+RI E+M++LQEL+P+ NKTDKASMLDE IEY
Sbjct: 102 RRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEY 150
>TAIR|locus:2132303 [details] [associations]
symbol:UNE12 "AT4G02590" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009567 "double fertilization forming a zygote and endosperm"
evidence=IMP] [GO:0031347 "regulation of defense response"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0007275 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000239571
ProtClustDB:CLSN2687635 EMBL:AC002330 EMBL:AL161494 GO:GO:0031347
GO:GO:0009567 EMBL:AF488592 EMBL:AF367328 EMBL:AY143951
EMBL:AY088218 IPI:IPI00545077 IPI:IPI00892352 PIR:T01090
RefSeq:NP_001031577.1 RefSeq:NP_001118919.1 RefSeq:NP_567245.1
UniGene:At.20028 ProteinModelPortal:O22768 SMR:O22768 IntAct:O22768
PaxDb:O22768 PRIDE:O22768 EnsemblPlants:AT4G02590.1
EnsemblPlants:AT4G02590.2 GeneID:828126 KEGG:ath:AT4G02590
TAIR:At4g02590 eggNOG:euNOG02041 InParanoid:O22768 OMA:PAWEKWS
PhylomeDB:O22768 Genevestigator:O22768 Uniprot:O22768
Length = 310
Score = 167 (63.8 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 41/98 (41%), Positives = 57/98 (58%)
Query: 290 GDNSLKRKSRDAVDSECQSEAAGFE---------SGAGNKTAQRSG-SCRRSRAAEVHNL 339
G S KR S D VD+ C S F S T+ R RR +A + H++
Sbjct: 100 GHGSGKRFSDDVVDNRCSSMKPVFHGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSI 159
Query: 340 SERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
+ER RR+RI E++RALQEL+P NKTD+A+M+DE ++Y
Sbjct: 160 AERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDY 197
>UNIPROTKB|Q7Y1H4 [details] [associations]
symbol:OSJNBa0094F01.11 "Putative uncharacterized protein
OSJNBa0094F01.11" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0009567
EMBL:AC093713 EMBL:AK104412 RefSeq:NP_001051563.1 UniGene:Os.27522
EnsemblPlants:LOC_Os03g58330.1 GeneID:4334429 KEGG:osa:4334429
OMA:TDGTERQ ProtClustDB:CLSN2694399 Uniprot:Q7Y1H4
Length = 294
Score = 166 (63.5 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/71 (46%), Positives = 48/71 (67%)
Query: 307 QSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTD 366
QS+ G G + RR +A + H+++ER RR+RI E+MRALQEL+P+ NKTD
Sbjct: 114 QSKQGGAAVGPQPPAPRPKVRARRGQATDPHSIAERLRRERIAERMRALQELVPNTNKTD 173
Query: 367 KASMLDEAIEY 377
+A+MLDE ++Y
Sbjct: 174 RAAMLDEILDY 184
>UNIPROTKB|Q6Z2G7 [details] [associations]
symbol:P0680A05.9 "Putative bHLH transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008208 eggNOG:NOG251551 EMBL:AP005323 EMBL:AK119183
RefSeq:NP_001047868.1 UniGene:Os.7751
EnsemblPlants:LOC_Os02g47660.1 GeneID:4330462 KEGG:osa:4330462
OMA:TVESLCQ ProtClustDB:CLSN2693116 Uniprot:Q6Z2G7
Length = 361
Score = 166 (63.5 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 39/84 (46%), Positives = 53/84 (63%)
Query: 295 KRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRA 354
K+K+ A + + +A + AG KT RR +A + H+L+ER RR+RI+E+MR
Sbjct: 134 KKKAEVASPKDSPATSASTVT-AGQKTDYIHVRARRGQATDSHSLAERVRRERISERMRY 192
Query: 355 LQELIPHCNK-TDKASMLDEAIEY 377
LQEL+P CNK T KA MLDE I Y
Sbjct: 193 LQELVPGCNKVTGKAGMLDEIINY 216
>UNIPROTKB|Q94LR3 [details] [associations]
symbol:OSJNBa0010C11.7 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
GO:GO:0003677 EMBL:DP000086 EMBL:AP008216 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC069300 RefSeq:NP_001065353.1
UniGene:Os.27587 IntAct:Q94LR3 STRING:Q94LR3 GeneID:4349351
KEGG:osa:4349351 ProtClustDB:CLSN2714538 Uniprot:Q94LR3
Length = 191
Score = 143 (55.4 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 56/185 (30%), Positives = 80/185 (43%)
Query: 340 SERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYXXXXXXXXXXXXVMWMGSGMAP 399
+ +RRDRIN+KM+ LQ+L+P+ +KTDKASMLDE I+Y + MGS M P
Sbjct: 9 NNHKRRDRINQKMKTLQKLVPNSSKTDKASMLDEVIDYLKQLQAQVQV--MSRMGSMMMP 66
Query: 400 LMFPGMQHYMSRXXXXXXXXXLP-SVTN--------PMHFSRVPLVDQSMSMAQAQNRAV 450
+ Q MS + S+ N PMH P + S A + + A
Sbjct: 67 MGMAMPQLQMSVMAQMAQMAQIGLSMMNMGQAGGYAPMHMHTPPFLPVSWDAAASSSSAA 126
Query: 451 MCQASVLNPVNYQNQMQNSNF-TEQYARYMGFHP--MQANSQPMNMFRFGSPTMQNQIVS 507
P S F Q A+ P M+A ++ M M++ + Q Q
Sbjct: 127 AADRPP-QPTGAATSDAFSAFLASQAAQQNAQQPNGMEAYNRMMAMYQKLNHQQQQQ-QD 184
Query: 508 LPSSS 512
PS+S
Sbjct: 185 QPSNS 189
>UNIPROTKB|Q6EPZ6 [details] [associations]
symbol:P0014G10.34 "BHLH transcription factor PTF1-like
protein" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP008215 HOGENOM:HOG000239571 EMBL:AP005784
RefSeq:NP_001175840.1 UniGene:Os.59658
EnsemblPlants:LOC_Os09g25040.1 GeneID:9272478 KEGG:osa:9272478
OMA:SMSVLTA Uniprot:Q6EPZ6
Length = 499
Score = 163 (62.4 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 39/74 (52%), Positives = 52/74 (70%)
Query: 307 QSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-- 364
Q+ AAG GA QR + RR +A + H+++ER RR+RI E+M+ALQEL+P+ NK
Sbjct: 234 QAGAAG--GGAPAPPRQRVRA-RRGQATDPHSIAERLRRERIAERMKALQELVPNANKLM 290
Query: 365 -TDKASMLDEAIEY 377
TDKASMLDE I+Y
Sbjct: 291 QTDKASMLDEIIDY 304
Score = 44 (20.5 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 99 DFYSQLFSELPPS 111
DF Q+ S LPPS
Sbjct: 34 DFLDQMLSSLPPS 46
>UNIPROTKB|Q6Z7E7 [details] [associations]
symbol:P0020C11.18 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:CM000139
EMBL:AP004865 EMBL:AK241924 EnsemblPlants:LOC_Os02g35660.1
OMA:TTAMQYL Uniprot:Q6Z7E7
Length = 524
Score = 162 (62.1 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 33/67 (49%), Positives = 49/67 (73%)
Query: 312 GFESG-AGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASM 370
G SG AGN + RR +A + H+++ER RR++I+++M+ LQEL+P+ NKT+KASM
Sbjct: 299 GNGSGSAGNGAPKPRVRARRGQATDPHSIAERLRREKISDRMKDLQELVPNSNKTNKASM 358
Query: 371 LDEAIEY 377
LDE I+Y
Sbjct: 359 LDEIIDY 365
>TAIR|locus:2007534 [details] [associations]
symbol:AT1G03040 "AT1G03040" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF251692
EMBL:AC006550 EMBL:AY054469 EMBL:AY114633 IPI:IPI00529284
PIR:B86161 RefSeq:NP_001184895.1 RefSeq:NP_563672.1
UniGene:At.20497 ProteinModelPortal:Q93Y00 SMR:Q93Y00 IntAct:Q93Y00
PaxDb:Q93Y00 PRIDE:Q93Y00 EnsemblPlants:AT1G03040.1 GeneID:839446
KEGG:ath:AT1G03040 TAIR:At1g03040 eggNOG:NOG281566
HOGENOM:HOG000239571 InParanoid:Q93Y00 OMA:SIVKPEM PhylomeDB:Q93Y00
ProtClustDB:CLSN2687635 Genevestigator:Q93Y00 Uniprot:Q93Y00
Length = 302
Score = 156 (60.0 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 37/97 (38%), Positives = 58/97 (59%)
Query: 291 DNSLKRKSRDAVDSECQSEAAGFESGAGNKTA-----QRSG-----SCRRSRAAEVHNLS 340
D + KR D +D+ C S F ++ A Q+S RR +A + H+++
Sbjct: 99 DETGKRFQDDVLDNRCSSMKPIFHGQPMSQPAPPMPHQQSTIRPRVRARRGQATDPHSIA 158
Query: 341 ERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
ER RR+RI E++R+LQEL+P NKTD+A+M+DE ++Y
Sbjct: 159 ERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDY 195
>UNIPROTKB|Q2QMM0 [details] [associations]
symbol:LOC_Os12g40710 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 Gramene:Q2QMM0 Uniprot:Q2QMM0
Length = 266
Score = 154 (59.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 37/105 (35%), Positives = 55/105 (52%)
Query: 308 SEAAGFESGAGNKTAQRSGSCRRSR-AAEVHNLSERRRRDRINEKMRALQELIPHC-NKT 365
S+ +G K + +G R R AA HNL+E+RRR +I E+ R LQ L+P C NK+
Sbjct: 57 SDDSGERKKKKKKASSAAGKASRHRHAAGAHNLTEKRRRFKITERFRTLQRLVPGCDNKS 116
Query: 366 DKASMLDEAIEYXXXXXXXXXXXXVMWMGSGMAPLMFPGMQHYMS 410
++AS LD+ I+Y + GS A +++P H S
Sbjct: 117 NQASTLDQTIQYMKSLQHQLEATSAV--GSPAAAVLYPAAVHPQS 159
>TAIR|locus:2201906 [details] [associations]
symbol:AT1G10120 "AT1G10120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC004122 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:BT012655 EMBL:AK221806 EMBL:AK229309
EMBL:AK230347 EMBL:AF488606 IPI:IPI00541831 PIR:T00632
RefSeq:NP_172483.4 UniGene:At.43391 UniGene:At.69296
ProteinModelPortal:Q6NKN9 SMR:Q6NKN9 EnsemblPlants:AT1G10120.1
GeneID:837549 KEGG:ath:AT1G10120 TAIR:At1g10120 eggNOG:NOG271189
HOGENOM:HOG000090626 InParanoid:Q6NKN9 OMA:GESSHED PhylomeDB:Q6NKN9
ProtClustDB:CLSN2681496 Genevestigator:Q6NKN9 Uniprot:Q6NKN9
Length = 366
Score = 154 (59.3 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 44/97 (45%), Positives = 58/97 (59%)
Query: 287 QSTGDNSLKR----KSRDAVDSEC-QSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSE 341
Q D S K+ +S++ V+ E QSE A E N R+ RR +A H+L+E
Sbjct: 169 QRGNDQSQKKHKNDQSKETVNKESSQSEEAPKE----NYIHMRA---RRGQATNSHSLAE 221
Query: 342 RRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEY 377
R RR++I+E+MR LQEL+P CNK T KA MLDE I Y
Sbjct: 222 RVRREKISERMRLLQELVPGCNKITGKAVMLDEIINY 258
>UNIPROTKB|Q69Y51 [details] [associations]
symbol:P0698A06.26-2 "Putative bHLH transcription factor
PTF1" species:39947 "Oryza sativa Japonica Group" [GO:0005634
"nucleus" evidence=IC] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0006355 Gene3D:4.10.280.10 SUPFAM:SSF47459
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 EMBL:AP003514
ProteinModelPortal:Q69Y51 EnsemblPlants:LOC_Os06g09370.3
Gramene:Q69Y51 HOGENOM:HOG000241730 Uniprot:Q69Y51
Length = 401
Score = 154 (59.3 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 315 SGAGNKT-AQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDE 373
S GN A+ RR +A + H+++ER RR++I+E+M+ LQ L+P+ NK DKASMLDE
Sbjct: 227 SAPGNSANAKPRTRARRGQATDPHSIAERLRREKISERMKNLQVLVPNSNKADKASMLDE 286
Query: 374 AIEY 377
I+Y
Sbjct: 287 IIDY 290
>UNIPROTKB|Q8GZV6 [details] [associations]
symbol:OJ1017C11.10 "Putative uncharacterized protein
OJ1017C11.10" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR001810
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50181 PROSITE:PS50888
SMART:SM00256 SMART:SM00353 GO:GO:0005634 SUPFAM:SSF81383
Gene3D:4.10.280.10 SUPFAM:SSF47459 InterPro:IPR019955
PROSITE:PS50053 EMBL:AC135157 ProteinModelPortal:Q8GZV6
Gramene:Q8GZV6 Uniprot:Q8GZV6
Length = 776
Score = 158 (60.7 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 52/173 (30%), Positives = 80/173 (46%)
Query: 218 CSMMTVGSSHC---GSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTXXX 274
CS HC G+NQ+A LD++ + V + + G + PT
Sbjct: 512 CSAAASSQGHCFAVGANQLA-SLDLAMDFDEPILFPVHN--ASLQEG-IQFYNPTGDTQL 567
Query: 275 XXXXXX---FNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESG--AGNKTAQRSG--- 326
+ ++ +G+ S S++ Q E + +G AG+ A R
Sbjct: 568 SRNMSIDKCLKGSKRKGSGEGSSSLHSQEETGEMPQRELSMEHAGEKAGDADASREEYVH 627
Query: 327 -SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEY 377
+R +A H+L+ER RR++INE+M+ LQ+L+P CNK T KA MLDE I Y
Sbjct: 628 VRAKRGQATNSHSLAERFRREKINERMKLLQDLVPGCNKITGKAMMLDEIINY 680
>UNIPROTKB|Q84T08 [details] [associations]
symbol:OSJNBa0087C10.10 "BHLH transcription factor,
putative, expressed" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238007 EMBL:AC108906 RefSeq:NP_001051605.1
UniGene:Os.33544 STRING:Q84T08 EnsemblPlants:LOC_Os03g58830.1
GeneID:4334471 KEGG:osa:4334471 OMA:GTSTSEW ProtClustDB:CLSN2694415
Uniprot:Q84T08
Length = 265
Score = 149 (57.5 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 285 SKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQR--SGSCRRSRAAEVHNLSER 342
+ +S+GDNS R + DS S++ Q RR +A + H+L+ER
Sbjct: 94 ASKSSGDNSSLRTEAET-DSRNASKSGDQNPPPPEPPKQDYIHVRARRGQATDSHSLAER 152
Query: 343 RRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEY 377
RR++I+E+M+ LQ+L+P CNK KAS+LDE I Y
Sbjct: 153 ARREKISERMKILQDLVPGCNKVIGKASVLDEIINY 188
>UNIPROTKB|Q69WS3 [details] [associations]
symbol:OJ1118_E12.15 "Putative bHLH protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003743
ProteinModelPortal:Q69WS3 Gramene:Q69WS3 Uniprot:Q69WS3
Length = 268
Score = 149 (57.5 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 39/95 (41%), Positives = 58/95 (61%)
Query: 297 KSRDAVDSECQSEAAGFESGAGNKTAQRSGS-------------CRRSRAAEVHNLSERR 343
KS D DS ++EA G +SG +K A ++ + RR +A + H+L+ER
Sbjct: 88 KSSDKNDS-LRTEA-GTDSGNSSKAADKNATPPEPPKQDYIHVRARRGQATDSHSLAERA 145
Query: 344 RRDRINEKMRALQELIPHCNKT-DKASMLDEAIEY 377
RR++I+E+M+ LQ+L+P CNK KAS+LDE I Y
Sbjct: 146 RREKISERMKILQDLVPGCNKVIGKASVLDEIINY 180
>TAIR|locus:2202867 [details] [associations]
symbol:BPEp "AT1G59640" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0048446 "petal morphogenesis" evidence=IMP] [GO:0009062 "fatty
acid catabolic process" evidence=RCA] [GO:0009694 "jasmonic acid
metabolic process" evidence=RCA] [GO:0009753 "response to jasmonic
acid stimulus" evidence=RCA] [GO:0009827 "plant-type cell wall
modification" evidence=RCA] [GO:0009860 "pollen tube growth"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0048441 "petal development" evidence=RCA] [GO:0048443 "stamen
development" evidence=RCA] [GO:0048481 "ovule development"
evidence=RCA] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 EMBL:AM269753 EMBL:AM269754
EMBL:AC009317 EMBL:BT003964 EMBL:BT005064 EMBL:AY086373
EMBL:AB028232 IPI:IPI00530097 IPI:IPI00531813 PIR:B96620 PIR:T52428
RefSeq:NP_564749.1 RefSeq:NP_849829.1 UniGene:At.455
ProteinModelPortal:Q0JXE7 SMR:Q0JXE7 IntAct:Q0JXE7 STRING:Q0JXE7
PRIDE:Q0JXE7 EnsemblPlants:AT1G59640.2 GeneID:842254
KEGG:ath:AT1G59640 TAIR:At1g59640 eggNOG:NOG296410
InParanoid:Q0JXE7 OMA:RGASPEW PhylomeDB:Q0JXE7
ProtClustDB:CLSN2688917 Genevestigator:Q0JXE7 GO:GO:0048446
Uniprot:Q0JXE7
Length = 343
Score = 151 (58.2 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 37/97 (38%), Positives = 59/97 (60%)
Query: 288 STGDNSLKRKSRDAV-DSECQSEAAGFESGAGNKTAQRSGS-----CRRSRAAEVHNLSE 341
S G+N KR+ D V D + ++E+ G E+ + + + RR +A + H+L+E
Sbjct: 94 SEGEN--KRQKIDEVCDGKAEAESLGTETEQKKQQMEPTKDYIHVRARRGQATDSHSLAE 151
Query: 342 RRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEY 377
R RR++I+E+M+ LQ+L+P CNK KA +LDE I Y
Sbjct: 152 RARREKISERMKILQDLVPGCNKVIGKALVLDEIINY 188
>UNIPROTKB|Q5VR96 [details] [associations]
symbol:P0038C05.31-1 "Os06g0275600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008212 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP003044 RefSeq:NP_001057380.1 UniGene:Os.32526
EnsemblPlants:LOC_Os06g16400.1 EnsemblPlants:LOC_Os06g16400.2
GeneID:4340749 KEGG:osa:4340749 ProtClustDB:CLSN2697804
Uniprot:Q5VR96
Length = 437
Score = 151 (58.2 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 68/242 (28%), Positives = 105/242 (43%)
Query: 148 SVVPELQRNAMPP----PRFEVHDAAPQNKNLGDLGKLVNFS-QSTAPPKGEL--G--PC 198
S++ L A PP P F A N G+LG ++N P G+ G PC
Sbjct: 76 SLLGMLSAGAPPPFVATPGFVDSTAGFPCYNGGNLGAMINHPFPGIHQPLGDFQNGVEPC 135
Query: 199 SGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDM-SRASSSGLNDDVRKVISP 257
D + G+ + E ++H + + +L M R +G ++ R +S
Sbjct: 136 REIEDIEIEGSKNVSQTGEKQQGDGETTHAVDSS-SKELSMPGRNGGAGHDEGTR--VSC 192
Query: 258 SERGKTETIEPTVTXXXXXXXXXFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGA 317
S++ K + V S Q D+ R +V S +S + A
Sbjct: 193 SKKRKRSGQDGGVKHAEGGEQLA-TVGSAQKNEDDEKGEPKRSSVASG-KSSGKQIKDNA 250
Query: 318 GN-KTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAI 375
G+ K RR +A H+L+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I
Sbjct: 251 GSPKEDYIHVRARRGQATNSHSLAERVRREKISERMKYLQDLVPGCSKVTGKAVMLDEII 310
Query: 376 EY 377
Y
Sbjct: 311 NY 312
>UNIPROTKB|Q6K8Y4 [details] [associations]
symbol:OJ1695_H09.18 "Basic helix-loop-helix (BHLH)-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000239571 EMBL:AP003975 EMBL:AP004094
EnsemblPlants:LOC_Os02g55250.1 OMA:GQDDFFD Uniprot:Q6K8Y4
Length = 463
Score = 137 (53.3 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 30/60 (50%), Positives = 40/60 (66%)
Query: 344 RRDRINEKMRALQELIPHCNKTDKASMLDEAIEYXXXXXXXXXXXXVMWMG--SGMAPLM 401
RR+RI E+M+ALQEL+P+ NKTDKASMLDE I+Y + +G S +APL+
Sbjct: 252 RRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGASAVAPLV 311
Score = 55 (24.4 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 304 SECQSEAAGFESGAGNKTAQRSGS-CRRSRAAEVHNLSER 342
S + AAG SG G R RR +A + H+++ER
Sbjct: 189 SASAAAAAGASSGGGAAAPPRQRQRARRGQATDPHSIAER 228
Score = 38 (18.4 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 500 TMQNQIVSLPSSSCVPFSGGAA 521
++ I S SSS +P +GG A
Sbjct: 381 SLATAISSATSSSLLPRTGGGA 402
Score = 37 (18.1 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 97 EKDFYSQLFSELP 109
+ DF+ Q+ S LP
Sbjct: 19 QDDFFDQMLSTLP 31
>TAIR|locus:2079676 [details] [associations]
symbol:AT3G07340 "AT3G07340" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000238007 EMBL:AC009853 EMBL:AK175369 EMBL:AK175496
EMBL:AK176563 EMBL:AK176663 EMBL:BT026497 EMBL:AF488595
IPI:IPI00521004 RefSeq:NP_187390.1 UniGene:At.40357
ProteinModelPortal:Q9SRT2 SMR:Q9SRT2 EnsemblPlants:AT3G07340.1
GeneID:819922 KEGG:ath:AT3G07340 GeneFarm:2908 TAIR:At3g07340
eggNOG:NOG283912 InParanoid:Q9SRT2 OMA:MENELFM PhylomeDB:Q9SRT2
ProtClustDB:CLSN2684837 Genevestigator:Q9SRT2 Uniprot:Q9SRT2
Length = 456
Score = 150 (57.9 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 51/160 (31%), Positives = 73/160 (45%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEYXXXXXXXXXX 387
RR +A + H+L+ER RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y
Sbjct: 261 RRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEF 320
Query: 388 XXVMWMGSGMAPLMFPGMQHYMSRXXXXXXXXXLPSVTNPMHFSRVPLVDQSMSMAQAQN 447
M + S L F M +S+ PS N MH +V +D S +
Sbjct: 321 LS-MKLSSVNTRLDF-NMDALLSKDI-------FPSSNNLMHHQQVLQLDSSAETLLGDH 371
Query: 448 RAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFHPMQAN 487
Q LNP N + N T + ++ P A+
Sbjct: 372 HNKNLQ---LNPDISSNNVINPLETSETRSFISHLPTLAH 408
Score = 43 (20.2 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 20/62 (32%), Positives = 22/62 (35%)
Query: 196 GPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVI 255
G SG+ RKR Q S V SS + D D R S N D K I
Sbjct: 197 GESSGELSRKRKTKSKQN-----SPSAVSSSK--EIEEKEDSDPKRCKKSEENGDKTKSI 249
Query: 256 SP 257
P
Sbjct: 250 DP 251
>TAIR|locus:2205420 [details] [associations]
symbol:AT1G68920 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC011665 EMBL:AF488584 EMBL:AY128299
EMBL:BT002259 IPI:IPI00536565 IPI:IPI00545990 PIR:G96713
RefSeq:NP_001031255.1 RefSeq:NP_177058.1 RefSeq:NP_849863.2
UniGene:At.28096 ProteinModelPortal:Q9CAA9 SMR:Q9CAA9 STRING:Q9CAA9
EnsemblPlants:AT1G68920.1 EnsemblPlants:AT1G68920.2 GeneID:843225
KEGG:ath:AT1G68920 TAIR:At1g68920 eggNOG:NOG301979
HOGENOM:HOG000238007 InParanoid:Q3E6P7 OMA:MLKGGIF PhylomeDB:Q9CAA9
ProtClustDB:CLSN2682343 Genevestigator:Q9CAA9 Uniprot:Q9CAA9
Length = 486
Score = 150 (57.9 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 36/95 (37%), Positives = 54/95 (56%)
Query: 288 STGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSG----SCRRSRAAEVHNLSERR 343
+ GD KR + +S + +G + G + + G RR +A H+L+ER
Sbjct: 263 NNGDE--KRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERV 320
Query: 344 RRDRINEKMRALQELIPHCNK-TDKASMLDEAIEY 377
RR++I+E+M+ LQ+L+P CNK T KA MLDE I Y
Sbjct: 321 RREKISERMKFLQDLVPGCNKVTGKAVMLDEIINY 355
>UNIPROTKB|Q2QMV9 [details] [associations]
symbol:LOC_Os12g39850 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011 EMBL:CM000149
KEGG:dosa:Os12t0589000-00 OMA:DESEMMA Uniprot:Q2QMV9
Length = 304
Score = 144 (55.7 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 37/105 (35%), Positives = 56/105 (53%)
Query: 303 DSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHC 362
DS E A ++GA +K R+G R A + +L R+RR+RINE+++ LQ L+P+
Sbjct: 198 DSSSSQEVA--DAGATSKGKSRAG---RGAATDPQSLYARKRRERINERLKTLQNLVPNG 252
Query: 363 NKTDKASMLDEAIEYXXXXXXXXX--XXXVMWMGSGMAPLMFPGM 405
K D ++ML+EA+ Y MWM AP+ + GM
Sbjct: 253 TKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWM---YAPIAYNGM 294
Score = 41 (19.5 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 22/93 (23%), Positives = 37/93 (39%)
Query: 85 VSWIHCPIED-SFEKDFYSQLFSELPPSGPMEVDKHTRQLREEKMVKFDPPGAVTSSQHP 143
+SW + S E + +QLFS P G E + + + A +S+ +
Sbjct: 10 MSWTVFDLPSHSDESEMMAQLFSAFPIHGEEEGHEQLPWFDQSSNPCYYSCNA-SSTAYS 68
Query: 144 NVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLG 176
N N S +P P +E + + N+ LG
Sbjct: 69 NSNASSIPA-------PSEYEGYCFSDSNEALG 94
>UNIPROTKB|Q75M33 [details] [associations]
symbol:P0668H12.5 "BHLH transcription factor" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008211 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000142 EMBL:AC084818 EMBL:AC073405 EMBL:HQ858853
EMBL:AK065864 RefSeq:NP_001054390.1 UniGene:Os.23082
EnsemblPlants:LOC_Os05g01256.1 EnsemblPlants:LOC_Os05g01256.2
GeneID:4337537 KEGG:osa:4337537 eggNOG:NOG296531 Uniprot:Q75M33
Length = 339
Score = 146 (56.5 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 41/101 (40%), Positives = 58/101 (57%)
Query: 309 EAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDK 367
EAAG E AG + RR +A + H+L+ER RR++I+E+M+ LQ L+P C+K T K
Sbjct: 167 EAAGGEPPAGYIHVR----ARRGQATDSHSLAERVRREKISERMKMLQSLVPGCDKVTGK 222
Query: 368 ASMLDEAIEYXXXXXXXXXXXXVMWMGSGMAPLMF---PGM 405
A MLDE I Y M + S ++PLM+ PG+
Sbjct: 223 ALMLDEIISYVQSLQNQVEFLS-MKLAS-LSPLMYEFGPGI 261
>TAIR|locus:2095198 [details] [associations]
symbol:AT3G23690 "AT3G23690" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
EMBL:AP000377 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 EMBL:AY065441 EMBL:AY096536
EMBL:EU550216 EMBL:EU550217 EMBL:EU550218 EMBL:EU550219
EMBL:EU550220 EMBL:EU550221 EMBL:EU550222 EMBL:EU550223
EMBL:EU550224 EMBL:EU550225 EMBL:EU550226 EMBL:EU550227
EMBL:EU550228 EMBL:EU550229 EMBL:EU550230 EMBL:EU550231
EMBL:EU550232 EMBL:EU550233 EMBL:EU550234 EMBL:EU550235
EMBL:EU550236 EMBL:EU550237 EMBL:EU550238 EMBL:EU550239
EMBL:AF488609 IPI:IPI00545445 RefSeq:NP_189011.2 UniGene:At.6666
ProteinModelPortal:Q9LK48 SMR:Q9LK48 PaxDb:Q9LK48 PRIDE:Q9LK48
EnsemblPlants:AT3G23690.1 GeneID:821950 KEGG:ath:AT3G23690
TAIR:At3g23690 eggNOG:NOG292697 InParanoid:Q9LK48 OMA:MEFNANA
PhylomeDB:Q9LK48 ProtClustDB:CLSN2917952 Genevestigator:Q9LK48
Uniprot:Q9LK48
Length = 371
Score = 146 (56.5 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 41/140 (29%), Positives = 66/140 (47%)
Query: 241 RASSSGLNDDVRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTSKQSTGDNSLKRKSRD 300
R ++ N RK I PS GK ++T + + S++
Sbjct: 106 RVHTTKSNSRKRKSI-PSGNGKESPASSSLTASNSKVSGENGGSKGGKRSKQDVAGSSKN 164
Query: 301 AVDSECQSEAAGFESGAGNKTAQR--SGSCRRSRAAEVHNLSERRRRDRINEKMRALQEL 358
V+ +C S+ + + + RR +A + H+L+ER RR++I+E+M LQ+L
Sbjct: 165 GVE-KCDSKGDNKDDAKPPEAPKDYIHVRARRGQATDSHSLAERARREKISERMTLLQDL 223
Query: 359 IPHCNK-TDKASMLDEAIEY 377
+P CN+ T KA MLDE I Y
Sbjct: 224 VPGCNRITGKAVMLDEIINY 243
>TAIR|locus:2115200 [details] [associations]
symbol:BEE2 "AT4G36540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009740 "gibberellic acid mediated signaling pathway"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
PROSITE:PS00678 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161589 EMBL:Z99708
EMBL:AF488591 EMBL:AF370231 EMBL:AY059122 EMBL:AY054588
EMBL:BT000388 EMBL:AY084997 EMBL:AY138254 IPI:IPI00540245
IPI:IPI00548266 PIR:D85431 RefSeq:NP_195372.1 RefSeq:NP_849508.1
UniGene:At.25403 ProteinModelPortal:Q93VJ4 SMR:Q93VJ4 IntAct:Q93VJ4
PRIDE:Q93VJ4 EnsemblPlants:AT4G36540.1 GeneID:829806
KEGG:ath:AT4G36540 TAIR:At4g36540 eggNOG:NOG240651
InParanoid:Q93VJ4 OMA:ELECHID PhylomeDB:Q93VJ4
ProtClustDB:CLSN2685556 Genevestigator:Q93VJ4 Uniprot:Q93VJ4
Length = 304
Score = 143 (55.4 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEY 377
RR A + H+L+ER RR++I++KM+ LQ+++P CNK T KA MLDE I Y
Sbjct: 144 RRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINY 193
>UNIPROTKB|Q84LH4 [details] [associations]
symbol:OSJNBb0011H13.2 "Putative Helix-loop-helix
DNA-binding domain containing protein" species:39947 "Oryza sativa
Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000009 EMBL:AP008209
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000140 EMBL:AC120983
EMBL:AC135956 RefSeq:NP_001051150.1 UniGene:Os.24540
EnsemblPlants:LOC_Os03g51910.1 GeneID:4333984 KEGG:osa:4333984
eggNOG:NOG262475 OMA:SKQMMLS ProtClustDB:CLSN2694257 Uniprot:Q84LH4
Length = 327
Score = 143 (55.4 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 48/165 (29%), Positives = 77/165 (46%)
Query: 214 EVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTXX 273
E RE + + C + Q++ D G++D + +++PS + + + T
Sbjct: 50 EDREGLYRSPNGTFCQNIQLSDDHSSGAKRRKGIDDHIA-LLNPSASSRIQNVGDQQTEV 108
Query: 274 XXXXXXXFNRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRA 333
R S + DN +KS + S+ S G G K +R +A
Sbjct: 109 SSQQ----ERISMEE--DN---QKSCSKMQSKEDSS-----DGDGTKEDYVHVRAKRGQA 154
Query: 334 AEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEY 377
H+L+ER RR +I+E+M+ LQ+L+P C+K T KA MLDE I Y
Sbjct: 155 TNSHSLAERLRRKKISERMKLLQDLVPGCSKITGKAVMLDEIINY 199
>TAIR|locus:505006688 [details] [associations]
symbol:AT5G50915 "AT5G50915" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0009739
"response to gibberellin stimulus" evidence=IEP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0009739 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB017063 EMBL:AF428350 EMBL:AY057549 EMBL:AY113059
EMBL:AY087602 IPI:IPI00536793 RefSeq:NP_568745.1 RefSeq:NP_851163.1
UniGene:At.23601 ProteinModelPortal:Q93W88 SMR:Q93W88
EnsemblPlants:AT5G50915.1 EnsemblPlants:AT5G50915.2 GeneID:835164
KEGG:ath:AT5G50915 TAIR:At5g50915 eggNOG:NOG262059
HOGENOM:HOG000242938 InParanoid:Q93W88 OMA:ISERMRT PhylomeDB:Q93W88
ProtClustDB:CLSN2689980 Genevestigator:Q93W88 Uniprot:Q93W88
Length = 286
Score = 140 (54.3 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEY 377
RR +A + H+L+ER RR++I+E+MR LQ L+P C+K T KA MLDE I Y
Sbjct: 139 RRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINY 188
>TAIR|locus:2118934 [details] [associations]
symbol:RSL2 "AT4G33880" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009733 "response to auxin stimulus" evidence=IEP] [GO:0016049
"cell growth" evidence=IMP] [GO:0048766 "root hair initiation"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009733 GO:GO:0003677 GO:GO:0016049 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL031032
EMBL:AL161584 HOGENOM:HOG000240244 GO:GO:0048766 EMBL:AF488616
EMBL:BT003137 EMBL:AK228110 IPI:IPI00526320 PIR:T05216
RefSeq:NP_195114.2 UniGene:At.31542 ProteinModelPortal:Q84WK0
SMR:Q84WK0 EnsemblPlants:AT4G33880.1 GeneID:829531
KEGG:ath:AT4G33880 TAIR:At4g33880 eggNOG:NOG318365
InParanoid:Q84WK0 OMA:TINTNSY PhylomeDB:Q84WK0
ProtClustDB:CLSN2680247 Genevestigator:Q84WK0 Uniprot:Q84WK0
Length = 352
Score = 142 (55.0 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 37/125 (29%), Positives = 61/125 (48%)
Query: 285 SKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAA--EVHNLSER 342
S+Q++ + + D + E + + +K +G R SR A + +L R
Sbjct: 223 SRQNSSTTFCTEEESNCADQDGGGEDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYAR 282
Query: 343 RRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYXXXXXXXXXXXXV--MWMGSGMAPL 400
+RR+RINE++R LQ L+P+ K D ++ML+EA+ Y +WM AP+
Sbjct: 283 KRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDDLWM---YAPI 339
Query: 401 MFPGM 405
F GM
Sbjct: 340 AFNGM 344
>UNIPROTKB|Q6ZCV8 [details] [associations]
symbol:P0028A08.20 "Os08g0487700 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AP008214 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:CM000145 EMBL:AP004557 RefSeq:NP_001062102.1 UniGene:Os.60678
EnsemblPlants:LOC_Os08g38080.1 GeneID:4345892 KEGG:osa:4345892
eggNOG:NOG275480 Uniprot:Q6ZCV8
Length = 365
Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 34/86 (39%), Positives = 50/86 (58%)
Query: 300 DAVDSECQSEAAGFESGAGNKTA---QRSG----SCRRSRAAEVHNLSERRRRDRINEKM 352
+ + + A G G G K A Q+ G R+ +A H+L+ER RR++I+E+M
Sbjct: 143 EVIGPPATAAAGGKSKGKGAKDAGEAQKEGYSHVRARKGQATNNHSLAERLRREKISERM 202
Query: 353 RALQELIPHCNK-TDKASMLDEAIEY 377
+ LQ+L+P C+K T KA MLDE I Y
Sbjct: 203 KLLQDLVPGCSKVTGKALMLDEIINY 228
>UNIPROTKB|Q2R0R9 [details] [associations]
symbol:LOC_Os11g41640 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
EMBL:DP000010 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000240244 KEGG:dosa:Os11t0634700-00 Gramene:Q2R0R9
OMA:SLYAKRR Uniprot:Q2R0R9
Length = 246
Score = 137 (53.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 40/133 (30%), Positives = 70/133 (52%)
Query: 283 RTSKQSTGDNSLK--RKSRDAVDSECQS-EAAGFESGA---GNKTAQRSGSCRRSR--AA 334
RTS+ + +++ S + V+ C S + G +S A G+ ++S + R + +
Sbjct: 104 RTSRSVSSSSTITDYETSSELVNPSCSSGSSVGEDSIAATDGSVVLKQSDNSRGHKQCSK 163
Query: 335 EVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYXXXXXXXXXXXXV--MW 392
+ +L +RRR+RINE++R LQ+L+P+ K D ++ML+EA++Y W
Sbjct: 164 DTQSLYAKRRRERINERLRILQQLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDTW 223
Query: 393 MGSGMAPLMFPGM 405
M APL + GM
Sbjct: 224 M---FAPLAYNGM 233
>TAIR|locus:2139484 [details] [associations]
symbol:CIB1 "AT4G34530" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0009911 "positive regulation of flower development"
evidence=IMP] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0009911
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AL161585 EMBL:AL023094
HOGENOM:HOG000238007 EMBL:AF488596 EMBL:AK117846 EMBL:AY120741
EMBL:BT005313 IPI:IPI00519970 PIR:T05273 RefSeq:NP_195179.2
UniGene:At.48937 ProteinModelPortal:Q8GY61 SMR:Q8GY61
DIP:DIP-59356N IntAct:Q8GY61 PRIDE:Q8GY61 EnsemblPlants:AT4G34530.1
GeneID:829604 KEGG:ath:AT4G34530 TAIR:At4g34530 eggNOG:NOG251551
InParanoid:Q8GY61 OMA:SGYSHEM PhylomeDB:Q8GY61
ProtClustDB:CLSN2915063 Genevestigator:Q8GY61 Uniprot:Q8GY61
Length = 335
Score = 140 (54.3 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 35/99 (35%), Positives = 57/99 (57%)
Query: 282 NRTSKQSTGDN-SLKRKSRDAVDSECQ-SEAAGFESGAGNKTAQRSGSCRRSRAAEVHNL 339
++ ++Q+ G S+K+ A E S + + KT RR +A + H++
Sbjct: 126 SKITEQNNGSTKSIKKMKHKAKKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSI 185
Query: 340 SERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEY 377
+ER RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y
Sbjct: 186 AERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINY 224
>TAIR|locus:2172209 [details] [associations]
symbol:AT5G62610 "AT5G62610" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HSSP:P36956 EMBL:AB020751 HOGENOM:HOG000238007 EMBL:AY072104
EMBL:AY123023 EMBL:AY084578 EMBL:AF488611 IPI:IPI00518025
RefSeq:NP_201067.1 UniGene:At.24534 UniGene:At.24682
ProteinModelPortal:Q9LV17 SMR:Q9LV17 PaxDb:Q9LV17 PRIDE:Q9LV17
EnsemblPlants:AT5G62610.1 GeneID:836382 KEGG:ath:AT5G62610
GeneFarm:2935 TAIR:At5g62610 eggNOG:NOG269855 InParanoid:Q9LV17
OMA:DDSSKMV PhylomeDB:Q9LV17 ProtClustDB:CLSN2916786
Genevestigator:Q9LV17 Uniprot:Q9LV17
Length = 281
Score = 138 (53.6 bits), Expect = 1.5e-06, P = 1.5e-06
Identities = 28/50 (56%), Positives = 38/50 (76%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEY 377
RR +A + H+L+ER RR++I+EKM ALQ++IP CNK KA +LDE I Y
Sbjct: 156 RRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINY 205
>TAIR|locus:2152551 [details] [associations]
symbol:AT5G48560 "AT5G48560" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AB015468 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238007 eggNOG:NOG283912
ProtClustDB:CLSN2684837 EMBL:AF488610 EMBL:BT002945 EMBL:BT005637
IPI:IPI00543091 RefSeq:NP_199667.1 UniGene:At.43769
ProteinModelPortal:Q9FJL4 SMR:Q9FJL4 IntAct:Q9FJL4 PaxDb:Q9FJL4
PRIDE:Q9FJL4 EnsemblPlants:AT5G48560.1 GeneID:834912
KEGG:ath:AT5G48560 TAIR:At5g48560 InParanoid:Q9FJL4 OMA:SASCYAT
PhylomeDB:Q9FJL4 Genevestigator:Q9FJL4 Uniprot:Q9FJL4
Length = 498
Score = 148 (57.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 37/97 (38%), Positives = 55/97 (56%)
Query: 287 QSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGS-----CRRSRAAEVHNLSE 341
+S+ + KR+ + D E + E G +S K + RR +A + H+L+E
Sbjct: 258 KSSEEKGGKRRREEEDDEEEEGEGEGNKSN-NTKPPEPPKDYIHVRARRGQATDSHSLAE 316
Query: 342 RRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEY 377
R RR++I E+M+ LQ+L+P CNK T KA MLDE I Y
Sbjct: 317 RVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINY 353
Score = 37 (18.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 470 NFTEQYARYMGFHPMQANSQPMNMFRFGSPTMQNQIVSLPSSS 512
N+ + R + F M+ +S F + ++ V +PSS+
Sbjct: 352 NYVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSKDVMIPSSN 394
>UNIPROTKB|Q69JJ6 [details] [associations]
symbol:OSJNBa0026C08.22 "TA1 protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP008215
ProtClustDB:CLSN2697804 EMBL:AP006169 EMBL:HQ858863 EMBL:AK121418
RefSeq:NP_001063455.1 UniGene:Os.38400
EnsemblPlants:LOC_Os09g29830.3 GeneID:4347355 KEGG:osa:4347355
Uniprot:Q69JJ6
Length = 428
Score = 140 (54.3 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 34/96 (35%), Positives = 53/96 (55%)
Query: 284 TSKQSTGDNSLKRKSRDAVDSECQSEAAGF-ESGAGNKTAQRSGSCRRSRAAEVHNLSER 342
++ +S +S A + +S+ G E+ K RR +A H+L+ER
Sbjct: 205 SANESVHSKDKGEESSPATTNGGKSKGKGAKETSESQKEEYIHVRARRGQATNSHSLAER 264
Query: 343 RRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEY 377
RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y
Sbjct: 265 LRREKISERMKLLQDLVPGCSKVTGKAVMLDEIINY 300
>TAIR|locus:2098008 [details] [associations]
symbol:PIL2 "phytochrome interacting factor 3-like 2"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010017 "red or far-red light signaling
pathway" evidence=IEP] [GO:0010089 "xylem development"
evidence=RCA] [GO:0044036 "cell wall macromolecule metabolic
process" evidence=RCA] InterPro:IPR011598 InterPro:IPR024097
InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
PANTHER:PTHR10014 PANTHER:PTHR10014:SF30 GO:GO:0010017
EMBL:AL138651 EMBL:AB090874 EMBL:BT033108 IPI:IPI00525935
IPI:IPI00846835 PIR:T48001 RefSeq:NP_001078329.1 RefSeq:NP_191768.2
UniGene:At.1005 UniGene:At.50304 ProteinModelPortal:Q8L5W7
SMR:Q8L5W7 IntAct:Q8L5W7 STRING:Q8L5W7 EnsemblPlants:AT3G62090.2
GeneID:825382 KEGG:ath:AT3G62090 TAIR:At3g62090 eggNOG:NOG305930
HOGENOM:HOG000115543 InParanoid:Q8L5W7 OMA:ETNMLES PhylomeDB:Q8L5W7
ProtClustDB:CLSN2680935 Genevestigator:Q8L5W7 Uniprot:Q8L5W7
Length = 363
Score = 140 (54.3 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 50/150 (33%), Positives = 72/150 (48%)
Query: 230 SNQVAYDLDMSRASSSGLNDDVRKVISPSERGKTETIEPTVTXXXXXXXXX--FNRTSKQ 287
SN+ D + +ASSS R ++ R K + I P F+ +S
Sbjct: 95 SNKHVDDSETLKASSSK-----RMMVDYHNRKKIKFIPPDEQSVVADRSFKLGFDTSSVG 149
Query: 288 STGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDR 347
T D+ ++D E S+ A + A +T R +R R AE +N ER +R+
Sbjct: 150 FTEDSEGSMYLSSSLDDE--SDDARPQVPA--RT--RKALVKRKRNAEAYNSPERNQRND 203
Query: 348 INEKMRALQELIPHCNKTDKASMLDEAIEY 377
IN+KMR LQ L+P+ +K D SMLDEAI Y
Sbjct: 204 INKKMRTLQNLLPNSHKDDNESMLDEAINY 233
Score = 40 (19.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 492 NMFRF----GSPTMQNQIVSLPSSSCVPFS 517
+M RF G MQN +P+ +C P S
Sbjct: 299 DMLRFLNHPGLMPMQNSAPFIPTENCSPQS 328
>TAIR|locus:2012393 [details] [associations]
symbol:AT1G68810 "AT1G68810" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC011914 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AC011665 EMBL:AY072161 EMBL:AY122983
IPI:IPI00517468 PIR:H96712 RefSeq:NP_564944.1 UniGene:At.46879
HSSP:P22415 ProteinModelPortal:Q9S7Y1 SMR:Q9S7Y1
EnsemblPlants:AT1G68810.1 GeneID:843213 KEGG:ath:AT1G68810
TAIR:At1g68810 eggNOG:NOG328059 HOGENOM:HOG000243133
InParanoid:Q9S7Y1 OMA:FVIKASL PhylomeDB:Q9S7Y1
ProtClustDB:CLSN2689090 Genevestigator:Q9S7Y1 Uniprot:Q9S7Y1
Length = 368
Score = 132 (51.5 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 312 GFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASML 371
G ++ G TAQ + A++ H+ +ERRRR+RIN + L+ ++P+ KTDKAS+L
Sbjct: 153 GLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSILPNTTKTDKASLL 212
Query: 372 DEAIEY 377
E I++
Sbjct: 213 AEVIQH 218
Score = 47 (21.6 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 54 NHNEPRQVQKQTLRGSGSCGNSSNLI-QDDETVSWIHCPIEDSFEKDF 100
+H++P Q +TL SG+ G+ + QD + W P S + F
Sbjct: 41 HHHDPSQ--SETLGASGNVGSGFTIFSQDSVSPIW-SLPPPTSIQPPF 85
>TAIR|locus:2028804 [details] [associations]
symbol:CIB5 "AT1G26260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009911 "positive regulation of flower development"
evidence=IGI] [GO:0048513 "organ development" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AC079829 GO:GO:0009911
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000238007
EMBL:AK117355 EMBL:BT005334 EMBL:AJ630483 EMBL:AY568655
EMBL:AF488608 IPI:IPI00529982 IPI:IPI00547855 PIR:H86388
RefSeq:NP_001031093.1 RefSeq:NP_173950.1 RefSeq:NP_973913.1
UniGene:At.41276 ProteinModelPortal:Q9C670 SMR:Q9C670 IntAct:Q9C670
STRING:Q9C670 EnsemblPlants:AT1G26260.1 EnsemblPlants:AT1G26260.2
GeneID:839167 KEGG:ath:AT1G26260 TAIR:At1g26260 eggNOG:NOG284637
InParanoid:Q9C670 OMA:ETHGYES PhylomeDB:Q9C670
ProtClustDB:CLSN2682645 Genevestigator:Q9C670 Uniprot:Q9C670
Length = 390
Score = 137 (53.3 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 33/96 (34%), Positives = 49/96 (51%)
Query: 283 RTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSER 342
R K + K+K + S + + K RR +A H+L+ER
Sbjct: 180 RIGKDCEEEEDKKQKDEQSPTSNANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAER 239
Query: 343 RRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEY 377
RR++I+E+M+ LQ+L+P C+K T KA MLDE I Y
Sbjct: 240 VRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINY 275
>UNIPROTKB|Q336P5 [details] [associations]
symbol:Os10g0575000 "Os10g0575000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:DP000086 EMBL:AP008216 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 eggNOG:NOG295658 KO:K13422 RefSeq:NP_001065478.1
UniGene:Os.100484 STRING:Q336P5 GeneID:4349484 KEGG:osa:4349484
ProtClustDB:CLSN2698296 Uniprot:Q336P5
Length = 699
Score = 140 (54.3 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 56/256 (21%), Positives = 109/256 (42%)
Query: 137 VTSSQHPNVNHSVVPELQRNAMPPPRFEVHDAAPQNKNLGDLGKLVNFSQ------STAP 190
+T + P+V H+ P + A PP R + + Q + G + +NFS + AP
Sbjct: 315 LTENPSPSV-HAPTPS--QPAAPPQRQQQQQQSSQAQQ-GPFRRELNFSDFASNGGAAAP 370
Query: 191 P--KGELGPCSGQFDRKRSGNLTQGEVRECSMMTVGSSHCGSNQVAYDLDMSRASSSGLN 248
P K E G + SG + ++ ++ GS + ++ A++ +
Sbjct: 371 PFFKPETGEILNFGNDSSSGRRNPSPAPPAATASLTTAP-GSLFSQHTPTLTAAANDAKS 429
Query: 249 DDVRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTSKQSTGDNSLKRKSRDAVDSECQ- 307
++ ++ + + R P T T++ STG + + D D E
Sbjct: 430 NNQKRSMEATSRASNTNNHPAATANEGMLSFSSAPTTRPSTGTGAPAKSESDHSDLEASV 489
Query: 308 -----SEAAGFESGAGNKTAQRSGSCRRSRAAEVHNL-SERRRRDRINEKMRALQELIPH 361
S A + +R R ++++ +ER+RR+++N++ AL+ ++P+
Sbjct: 490 REVESSRVVAPPPEAEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPN 549
Query: 362 CNKTDKASMLDEAIEY 377
+K DKAS+L +AI Y
Sbjct: 550 VSKMDKASLLGDAISY 565
>UNIPROTKB|Q6AV35 [details] [associations]
symbol:OSJNBa0063J18.7 "Putative transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0003677 EMBL:DP000009
EMBL:AP008209 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:CM000140
EMBL:AC107206 RefSeq:NP_001050667.1 UniGene:Os.79759
EnsemblPlants:LOC_Os03g42100.1 GeneID:4333457 KEGG:osa:4333457
eggNOG:NOG300710 OMA:CTSENDS ProtClustDB:CLSN2694086 Uniprot:Q6AV35
Length = 310
Score = 134 (52.2 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 43/129 (33%), Positives = 68/129 (52%)
Query: 283 RTSKQSTG-DNSLKRKSRDAVDSECQSE--AAGF-ESGAGNKTAQRSGSCRRSRAAEVHN 338
+ + Q G D S+ +R ++ S C SE + G ES K+ ++ S RS A + +
Sbjct: 176 KKAAQCEGEDGSIAVTNRQSL-SCCTSENDSIGSQESPVAAKSNGKAQSGHRS-ATDPQS 233
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYXXXXXXXXX--XXXVMWMGSG 396
L R+RR+RINE+++ LQ L+P+ K D ++ML+EA+ Y MWM
Sbjct: 234 LYARKRRERINERLKILQNLVPNGTKVDISTMLEEAMHYVKFLQLQIKLLSSDEMWM--- 290
Query: 397 MAPLMFPGM 405
AP+ + GM
Sbjct: 291 YAPIAYNGM 299
>UNIPROTKB|Q84QW1 [details] [associations]
symbol:OJ1191_A10.109 "BHLH transcription
factor(GBOF-1)-like" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:AP008214
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003888
RefSeq:NP_001062289.1 UniGene:Os.10830
EnsemblPlants:LOC_Os08g41320.1 GeneID:4346087 KEGG:osa:4346087
eggNOG:NOG320619 OMA:ERISQRM ProtClustDB:CLSN2697487 Uniprot:Q84QW1
Length = 405
Score = 139 (54.0 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEY 377
RR +A + H+L+ER RR+RI+++M+ LQ+L+P CNK KA MLDE I Y
Sbjct: 207 RRGQATDSHSLAERVRRERISQRMKVLQDLVPGCNKVIGKALMLDEIINY 256
Score = 39 (18.8 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 17/67 (25%), Positives = 26/67 (38%)
Query: 423 SVTNPMHFSRVPLVDQSMSMAQAQNRAVMCQASVLNPVNYQNQMQNSNFTEQYARYMGFH 482
+ NP+ FS +P + Q M QA C S + + ++ F EQ + F
Sbjct: 272 ATVNPLDFSNLPTLLQK-DMFQA------CGPSASSVFSLESSNSAFRFAEQGDVFQQFA 324
Query: 483 PMQANSQ 489
SQ
Sbjct: 325 QNSMESQ 331
>TAIR|locus:2027809 [details] [associations]
symbol:BEE3 "AT1G73830" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
HOGENOM:HOG000090950 ProtClustDB:CLSN2680013 EMBL:AF488585
EMBL:AC012679 EMBL:AK118781 EMBL:BT006055 IPI:IPI00541876
RefSeq:NP_177524.2 UniGene:At.34949 ProteinModelPortal:Q8GWK7
SMR:Q8GWK7 EnsemblPlants:AT1G73830.1 GeneID:843719
KEGG:ath:AT1G73830 TAIR:At1g73830 eggNOG:NOG264296
InParanoid:Q8GWK7 OMA:LENNFHQ PhylomeDB:Q8GWK7
Genevestigator:Q8GWK7 Uniprot:Q8GWK7
Length = 261
Score = 132 (51.5 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 34/103 (33%), Positives = 54/103 (52%)
Query: 284 TSKQSTGDNSLKRKSRDA-----VDSECQSEAAGFESGAGNKTAQRSG---SCRRSRAAE 335
TS+ S D +L S + ++ S G S + +R RR +A +
Sbjct: 97 TSENSVSDQTLSTSSAQVSINGNISTKNNSSRRGKRSKNREEEKEREVVHVRARRGQATD 156
Query: 336 VHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEY 377
H+++ER RR +INE+++ LQ+++P C KT A+MLDE I Y
Sbjct: 157 SHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINY 199
>TAIR|locus:504954900 [details] [associations]
symbol:AT5G43175 "AT5G43175" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AB008267 HOGENOM:HOG000240244 ProtClustDB:CLSN2688032
IPI:IPI00519888 RefSeq:NP_680385.1 UniGene:At.55333
ProteinModelPortal:Q3E7L7 SMR:Q3E7L7 EnsemblPlants:AT5G43175.1
GeneID:834335 KEGG:ath:AT5G43175 TAIR:At5g43175 eggNOG:NOG323547
InParanoid:Q3E7L7 OMA:MENEAFV PhylomeDB:Q3E7L7
Genevestigator:Q3E7L7 Uniprot:Q3E7L7
Length = 223
Score = 129 (50.5 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 26/81 (32%), Positives = 49/81 (60%)
Query: 297 KSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQ 356
+S + +S +A G S +K+ +R R A++ +L R+RR+RIN++++ LQ
Sbjct: 104 QSLSSYNSSDDEKALGLVSNT-SKSLKRKAKANRGIASDPQSLYARKRRERINDRLKTLQ 162
Query: 357 ELIPHCNKTDKASMLDEAIEY 377
L+P+ K D ++ML++A+ Y
Sbjct: 163 SLVPNGTKVDISTMLEDAVHY 183
>UNIPROTKB|Q2QMN2 [details] [associations]
symbol:LOC_Os12g40590 "Helix-loop-helix DNA-binding domain
containing protein, expressed" species:39947 "Oryza sativa Japonica
Group" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 EMBL:CM000149 eggNOG:NOG272270
KEGG:dosa:Os12t0597800-01 Uniprot:Q2QMN2
Length = 265
Score = 131 (51.2 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 24/44 (54%), Positives = 31/44 (70%)
Query: 334 AEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
AE H L+E+RRR RINEK + LQ L+P C+K ++S LD I Y
Sbjct: 154 AETHGLTEKRRRSRINEKFKMLQRLVPGCDKCSQSSTLDRTIHY 197
>UNIPROTKB|Q2QML8 [details] [associations]
symbol:LOC_Os12g40730 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
InterPro:IPR024097 InterPro:IPR024102 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 PANTHER:PTHR10014
PANTHER:PTHR10014:SF30 EMBL:DP000011 KEGG:dosa:Os12t0599400-00
KEGG:dosa:Os12t0599550-00 Gramene:Q2QML8 HOGENOM:HOG000244163
Uniprot:Q2QML8
Length = 387
Score = 138 (53.6 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 44/145 (30%), Positives = 68/145 (46%)
Query: 285 SKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRR 344
+K T D+S +RK + A + +S+ A ++ ++SG + H RR
Sbjct: 172 NKDETSDDSGERKKKKASSAAGKSKQASPRGCRSSQPYRKSGDSIDELFTKFH-----RR 226
Query: 345 RDRINEKMRALQELIPHCNKTDKASMLDEAIEYXXXXXXXXXXXXVMWMGSGMAPLMFPG 404
R +I E+ R LQ L+P C+K+++AS LD+ I+Y V+ GS A L++P
Sbjct: 227 RFKITERFRTLQRLVPGCDKSNQASTLDQTIQYMKSLQHQLKAMSVV--GSPPA-LLYPA 283
Query: 405 MQHYMSRXXXXXXXXXLPSVTNPMH 429
H S P VT PMH
Sbjct: 284 AVHPQSYMHPPPPP---PPVTMPMH 305
Score = 38 (18.4 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 28 ELVELLWQNG 37
+L EL+WQ G
Sbjct: 52 DLFELMWQGG 61
>TAIR|locus:2053766 [details] [associations]
symbol:AT2G42300 "AT2G42300" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AC005956 EMBL:AY065411 EMBL:AY096521 EMBL:AK175584
EMBL:AK176019 EMBL:AK176634 EMBL:AF488583 IPI:IPI00532521
PIR:C84852 RefSeq:NP_850368.1 UniGene:At.28495
ProteinModelPortal:Q8VZ02 SMR:Q8VZ02 EnsemblPlants:AT2G42300.1
GeneID:818831 KEGG:ath:AT2G42300 TAIR:At2g42300 eggNOG:NOG301522
HOGENOM:HOG000037005 InParanoid:Q8VZ02 OMA:PEWGREE PhylomeDB:Q8VZ02
ProtClustDB:CLSN2680198 Genevestigator:Q8VZ02 Uniprot:Q8VZ02
Length = 327
Score = 133 (51.9 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 35/93 (37%), Positives = 53/93 (56%)
Query: 287 QSTGDNSLKRKSRDA-VDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRR 345
Q+ +S KRK R+ V S + + ES +K RR +A + H+L+ER RR
Sbjct: 148 QNQSYSSGKRKEREKKVKSSTKKNKSSVES---DKLPYVHVRARRGQATDNHSLAERARR 204
Query: 346 DRINEKMRALQELIPHCNKTD-KASMLDEAIEY 377
++IN +M+ LQEL+P C+K A +LDE I +
Sbjct: 205 EKINARMKLLQELVPGCDKIQGTALVLDEIINH 237
>UNIPROTKB|Q2QQ32 [details] [associations]
symbol:LOC_Os12g32400 "Helix-loop-helix DNA-binding domain
containing protein" species:39947 "Oryza sativa Japonica Group"
[GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 GO:GO:0003677
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:DP000011 EMBL:CM000149
eggNOG:NOG284967 Uniprot:Q2QQ32
Length = 198
Score = 125 (49.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 33/81 (40%), Positives = 45/81 (55%)
Query: 325 SGSCRRSRAAEV-HNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEYXXXXXX 383
S +C+ S +AE + + RR RINE++R LQELIP+ K D ++ML+EAI+Y
Sbjct: 106 SKACKHSVSAESSQSYYAKNRRQRINERLRILQELIPNGTKVDISTMLEEAIQYVKFLHL 165
Query: 384 XXX--XXXVMWMGSGMAPLMF 402
MWM APL F
Sbjct: 166 QIKLLSSDEMWM---YAPLAF 183
>TAIR|locus:2014144 [details] [associations]
symbol:BEE1 "BR enhanced expression 1" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC013354
EMBL:AY138253 EMBL:AF488579 EMBL:AK117269 EMBL:BT005268
IPI:IPI00539846 RefSeq:NP_173276.2 UniGene:At.46141
ProteinModelPortal:Q8GZ13 SMR:Q8GZ13 IntAct:Q8GZ13
EnsemblPlants:AT1G18400.1 GeneID:838421 KEGG:ath:AT1G18400
TAIR:At1g18400 eggNOG:euNOG17991 HOGENOM:HOG000090950
InParanoid:Q8GZ13 PhylomeDB:Q8GZ13 ProtClustDB:CLSN2680013
Genevestigator:Q8GZ13 Uniprot:Q8GZ13
Length = 260
Score = 129 (50.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 43/137 (31%), Positives = 69/137 (50%)
Query: 242 ASSSGLNDDVRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTSKQSTGDNSLKRKSRDA 301
++SS L+ D ++ E K + + PT++ + T+ +T SL+R R
Sbjct: 75 STSSFLHSD-HNIVD--ETKKRKALLPTLSSSETSGVS--DNTNVIATETGSLRRGKRLK 129
Query: 302 VDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPH 361
E + E E + A RR +A + H+L+ER RR +INE++R LQ+++P
Sbjct: 130 KKKEEEDEK---EREVVHVRA------RRGQATDSHSLAERVRRGKINERLRCLQDMVPG 180
Query: 362 CNKT-DKASMLDEAIEY 377
C K A+MLDE I Y
Sbjct: 181 CYKAMGMATMLDEIINY 197
>UNIPROTKB|Q8S490 [details] [associations]
symbol:rau1 "Transcription factor RAU1" species:4530 "Oryza
sativa" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AF465824
ProteinModelPortal:Q8S490 Gramene:Q8S490 Genevestigator:Q8S490
Uniprot:Q8S490
Length = 150
Score = 110 (43.8 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEY 377
+R A +++ER RR RI+E++R LQEL+P+ +K T+ A MLD A++Y
Sbjct: 72 KRGCATHPRSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDY 121
>TAIR|locus:2204898 [details] [associations]
symbol:HFR1 "AT1G02340" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007165 "signal transduction" evidence=TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0009585 "red, far-red light
phototransduction" evidence=TAS] [GO:0009642 "response to light
intensity" evidence=IEP] [GO:0009785 "blue light signaling pathway"
evidence=TAS] [GO:0003712 "transcription cofactor activity"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0009738
"abscisic acid mediated signaling pathway" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA] [GO:0009630
"gravitropism" evidence=RCA] [GO:0010017 "red or far-red light
signaling pathway" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0009738
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003712
GO:GO:0009585 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AC064879
GO:GO:0009642 GO:GO:0009785 EMBL:AF288287 EMBL:AF324245
EMBL:AF323182 EMBL:AK117248 IPI:IPI00545685 PIR:G86153
RefSeq:NP_563650.1 UniGene:At.24795 ProteinModelPortal:Q9FE22
SMR:Q9FE22 IntAct:Q9FE22 STRING:Q9FE22 PRIDE:Q9FE22
EnsemblPlants:AT1G02340.1 GeneID:839300 KEGG:ath:AT1G02340
TAIR:At1g02340 eggNOG:NOG274868 HOGENOM:HOG000112891 OMA:FSSHAMR
PhylomeDB:Q9FE22 ProtClustDB:CLSN2916946 Genevestigator:Q9FE22
GermOnline:AT1G02340 Uniprot:Q9FE22
Length = 292
Score = 129 (50.5 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/39 (61%), Positives = 34/39 (87%)
Query: 340 SERRRRD-RINEKMRALQELIPHCNKTDKASMLDEAIEY 377
S+RRRRD +++ KMR LQ+L+P+C+KTDK S+LD+ IEY
Sbjct: 141 SKRRRRDEKMSNKMRKLQQLVPNCHKTDKVSVLDKTIEY 179
>TAIR|locus:2199221 [details] [associations]
symbol:RSL4 "AT1G27740" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009733 "response to auxin stimulus" evidence=IEP] [GO:0016049
"cell growth" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0048766 "root hair
initiation" evidence=IMP] [GO:0048765 "root hair cell
differentiation" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045893 GO:GO:0009733
GO:GO:0003677 GO:GO:0016049 GO:GO:0003700 GO:GO:0006351
EMBL:AC012375 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AY085436
IPI:IPI00523669 PIR:B86402 RefSeq:NP_564293.1 UniGene:At.41015
ProteinModelPortal:Q8LEG1 SMR:Q8LEG1 EnsemblPlants:AT1G27740.1
GeneID:839667 KEGG:ath:AT1G27740 TAIR:At1g27740 eggNOG:NOG244031
HOGENOM:HOG000240244 InParanoid:Q8LEG1 OMA:DESNTNW PhylomeDB:Q8LEG1
ProtClustDB:CLSN2688032 Genevestigator:Q8LEG1 GO:GO:0048766
Uniprot:Q8LEG1
Length = 258
Score = 126 (49.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 39/156 (25%), Positives = 73/156 (46%)
Query: 252 RKVISPSERGKTETIEPTVTXXXXXXXXXFNRTSKQSTGDNSLKRKSRDAVDSECQSEAA 311
RK++ KT + VT R S +S N++ + + VD + S ++
Sbjct: 98 RKLLDVENLCKTNS-NCDVTRQELAKSKKKQRVSSES---NTVDESNTNWVDGQSLSNSS 153
Query: 312 GFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASML 371
E + ++ + + + A + +L R+RR++INE+++ LQ L+P+ K D ++ML
Sbjct: 154 DDEKASVTSVKGKTRATKGT-ATDPQSLYARKRREKINERLKTLQNLVPNGTKVDISTML 212
Query: 372 DEAIEYXXXXXXXXXXXXV--MWMGSGMAPLMFPGM 405
+EA+ Y +WM APL + G+
Sbjct: 213 EEAVHYVKFLQLQIKLLSSDDLWM---YAPLAYNGL 245
>TAIR|locus:2062235 [details] [associations]
symbol:NAI1 "AT2G22770" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:0007029 "endoplasmic reticulum organization" evidence=IMP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10
SUPFAM:SSF47459 HOGENOM:HOG000240300 ProtClustDB:CLSN2690866
EMBL:AF488564 EMBL:AK176248 IPI:IPI00531737 PIR:F84616
RefSeq:NP_850031.2 UniGene:At.43434 ProteinModelPortal:Q8S3F1
SMR:Q8S3F1 STRING:Q8S3F1 PRIDE:Q8S3F1 EnsemblPlants:AT2G22770.1
GeneID:816807 KEGG:ath:AT2G22770 TAIR:At2g22770 eggNOG:NOG310015
InParanoid:Q8S3F1 OMA:TDEYLID PhylomeDB:Q8S3F1
Genevestigator:Q8S3F1 Uniprot:Q8S3F1
Length = 320
Score = 126 (49.4 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 33/122 (27%), Positives = 60/122 (49%)
Query: 257 PSERGKTETIEPTVTXXXXXXXXXFNRTSKQ-STGDNSLKRKSRDAVDSECQSEAAGFES 315
P+++ KT + + +RTS+ S G K + + + +
Sbjct: 52 PTKQMKTNNNMNSTSSSPSSSSSSGSRTSQVISFGSPDTKTNPVETSLNFSNQVSMDQKV 111
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 375
G+ K +G R + H L+ER+RR ++NE++ AL L+P KTDKA++L++AI
Sbjct: 112 GSKRKDCVNNGGRREPHLLKEHVLAERKRRQKLNERLIALSALLPGLKKTDKATVLEDAI 171
Query: 376 EY 377
++
Sbjct: 172 KH 173
>UNIPROTKB|Q5N802 [details] [associations]
symbol:P0004D12.24 "BHLH transcription factor"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP008207 eggNOG:NOG283912 EMBL:AP003433 EMBL:HQ858864
EMBL:AK101063 RefSeq:NP_001045188.1 UniGene:Os.5763
EnsemblPlants:LOC_Os01g68700.2 GeneID:4324327 KEGG:osa:4324327
ProtClustDB:CLSN2692207 Uniprot:Q5N802
Length = 481
Score = 134 (52.2 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEY 377
RR A + H+L+ER RR++I+++M+ LQ+L+P CNK KA MLDE I Y
Sbjct: 280 RRGEATDSHSLAERVRREKISQRMKLLQDLVPGCNKVVGKAVMLDEIINY 329
Score = 37 (18.1 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 135 GAVTSSQHPNVNHSVVPELQRNAMPP 160
G S P +N S++ + A PP
Sbjct: 65 GGTPLSSPPKLNLSMMGQFHHYAAPP 90
>TAIR|locus:2065086 [details] [associations]
symbol:AT2G40200 "AT2G40200" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 EMBL:AF085279 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AF488586 EMBL:BT029997 EMBL:BT030051
IPI:IPI00547467 PIR:E84826 RefSeq:NP_181549.1 UniGene:At.37090
ProteinModelPortal:Q9XEF0 SMR:Q9XEF0 EnsemblPlants:AT2G40200.1
GeneID:818611 KEGG:ath:AT2G40200 TAIR:At2g40200 eggNOG:NOG318931
HOGENOM:HOG000095217 InParanoid:Q9XEF0 OMA:QPETISD PhylomeDB:Q9XEF0
ProtClustDB:CLSN2913057 ArrayExpress:Q9XEF0 Genevestigator:Q9XEF0
Uniprot:Q9XEF0
Length = 254
Score = 122 (48.0 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 30/81 (37%), Positives = 48/81 (59%)
Query: 300 DAVDSECQSEAAGFESGA--GNKTAQRS-GSCRRSRA-AEVHNLSERRRRDRINEKMRAL 355
++ DS+ GF S + GN A G ++ + + H L+E+RRRDRIN + AL
Sbjct: 26 ESSDSDWNRFNLGFSSSSFGGNFPADDCVGGIEKAESLSRSHRLAEKRRRDRINSHLTAL 85
Query: 356 QELIPHCNKTDKASMLDEAIE 376
++L+P+ +K DKA++L IE
Sbjct: 86 RKLVPNSDKLDKAALLATVIE 106
>UNIPROTKB|Q6ZFY4 [details] [associations]
symbol:OJ1311_H06.19 "BHLH protein-like" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP003983
EMBL:AP004161 Uniprot:Q6ZFY4
Length = 298
Score = 123 (48.4 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 296 RKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRAL 355
+K A S+ S + + GAG K A ++ S + + +L+ + RR+RI+E++R L
Sbjct: 169 QKRAHAESSQAMSPSKK-QCGAGRK-AGKAKSAPTTPTKDPQSLAAKNRRERISERLRIL 226
Query: 356 QELIPHCNKTDKASMLDEAIEY 377
QEL+P+ K D +ML++AI Y
Sbjct: 227 QELVPNGTKVDLVTMLEKAISY 248
>UNIPROTKB|Q6Z339 [details] [associations]
symbol:B1121A12.20 "Os02g0726700 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P36956
EMBL:AP008208 EMBL:AP005284 RefSeq:NP_001047993.1 UniGene:Os.52592
GeneID:4330593 KEGG:osa:4330593 ProtClustDB:CLSN2919237
Uniprot:Q6Z339
Length = 344
Score = 124 (48.7 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 29/70 (41%), Positives = 43/70 (61%)
Query: 309 EAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN-KTDK 367
EA E + +A + S RS+ H+ +E+RRR +IN+++ L+EL+PH + K DK
Sbjct: 126 EATRAEGRSSASSADQGPSTPRSK----HSATEQRRRTKINDRLEILRELLPHTDQKRDK 181
Query: 368 ASMLDEAIEY 377
AS L E IEY
Sbjct: 182 ASFLSEVIEY 191
>UNIPROTKB|Q84LF9 [details] [associations]
symbol:RERJ1 "Transcription Factor" species:4530 "Oryza
sativa" [GO:0005634 "nucleus" evidence=IC] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
Gene3D:4.10.280.10 SUPFAM:SSF47459 HSSP:P01106 EMBL:AB040744
ProteinModelPortal:Q84LF9 Gramene:Q84LF9 Genevestigator:Q84LF9
Uniprot:Q84LF9
Length = 310
Score = 123 (48.4 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 35/99 (35%), Positives = 49/99 (49%)
Query: 282 NRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHN--- 338
N S G +S + AV + + AG SG G T G A N
Sbjct: 38 NYESSSPDGSHSSSAPAPAAVGGDAAAAVAG--SGGGMTTMMMGGGGGGGDDAGGANKNI 95
Query: 339 LSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
L ER RR ++NEK+ AL+ ++P+ K DKAS++ +AIEY
Sbjct: 96 LMERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEY 134
>TAIR|locus:2090847 [details] [associations]
symbol:ICE1 "AT3G26744" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA;TAS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IDA] [GO:0050826 "response to freezing"
evidence=RCA;IMP] [GO:0010440 "stomatal lineage progression"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0009410 "response to xenobiotic
stimulus" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=RCA] [GO:0009845 "seed germination"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0009933 "meristem structural organization"
evidence=RCA] [GO:0010162 "seed dormancy process" evidence=RCA]
[GO:0010182 "sugar mediated signaling pathway" evidence=RCA]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016567 "protein ubiquitination" evidence=RCA]
[GO:0016571 "histone methylation" evidence=RCA] [GO:0016579
"protein deubiquitination" evidence=RCA] [GO:0019915 "lipid
storage" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0048522 "positive regulation of
cellular process" evidence=RCA] InterPro:IPR011598 Pfam:PF00010
PROSITE:PS50888 SMART:SM00353 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0045893 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0050826 EMBL:AB016889 GO:GO:0010440
Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB026648 EMBL:AY195621
EMBL:AY079016 EMBL:BT020379 EMBL:AK228443 IPI:IPI00518051
IPI:IPI00656676 RefSeq:NP_001030774.1 RefSeq:NP_001030776.2
RefSeq:NP_189309.2 UniGene:At.25302 ProteinModelPortal:Q9LSE2
SMR:Q9LSE2 STRING:Q9LSE2 PaxDb:Q9LSE2 PRIDE:Q9LSE2
EnsemblPlants:AT3G26744.1 EnsemblPlants:AT3G26744.2
EnsemblPlants:AT3G26744.4 GeneID:822287 KEGG:ath:AT3G26744
TAIR:At3g26744 eggNOG:NOG236974 HOGENOM:HOG000085036
InParanoid:Q9LSE2 OMA:NSESSGM PhylomeDB:Q9LSE2
ProtClustDB:CLSN2690572 Genevestigator:Q9LSE2 GermOnline:AT3G26744
Uniprot:Q9LSE2
Length = 494
Score = 126 (49.4 bits), Expect = 0.00011, P = 0.00011
Identities = 42/162 (25%), Positives = 75/162 (46%)
Query: 228 CGSNQVAYDLD-MSRASSSGLNDDVRKVISPSERGKTETIEPTVTXXXXXXXXXFNRTSK 286
CG +L+ ++ G + KV+ P E + +PT+ SK
Sbjct: 189 CGGFTAPLELEGFGSPANGGFVGNRAKVLKPLEVLASSGAQPTLFQKRAAMRQSSG--SK 246
Query: 287 QSTGDNS-LKRKSRDAVDSECQSEAAGF--------ESGAGNKTAQRSGSCR-RSRAAEV 336
++S ++R S D E E +G ESG ++ Q G + + +
Sbjct: 247 MGNSESSGMRRFSDDGDMDETGIEVSGLNYESDEINESGKAAESVQIGGGGKGKKKGMPA 306
Query: 337 HNL-SERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
NL +ERRRR ++N+++ L+ ++P +K D+AS+L +AI+Y
Sbjct: 307 KNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDY 348
>TAIR|locus:2032990 [details] [associations]
symbol:CES "AT1G25330" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IMP;TAS]
[GO:2000488 "positive regulation of brassinosteroid biosynthetic
process" evidence=IMP] [GO:0048441 "petal development"
evidence=RCA] [GO:0048443 "stamen development" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
eggNOG:NOG264296 EMBL:AC079374 EMBL:DQ446289 EMBL:DQ652859
EMBL:AK175757 EMBL:AY088885 EMBL:AF488607 IPI:IPI00519962
PIR:B86383 PIR:D86381 RefSeq:NP_564229.1 UniGene:At.48236
UniGene:At.63980 ProteinModelPortal:A4D998 SMR:A4D998
EnsemblPlants:AT1G25330.1 GeneID:839117 KEGG:ath:AT1G25330
GeneFarm:2907 TAIR:At1g25330 InParanoid:A4D998 PhylomeDB:A4D998
Genevestigator:A4D998 GO:GO:2000488 Uniprot:A4D998
Length = 223
Score = 119 (46.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKT-DKASMLDEAIEY 377
+R +A + H+L+ER RR++INE+++ LQ+L+P C K A MLD I+Y
Sbjct: 107 KRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDY 156
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 32 LLWQNGHVVLSSQAQTQRKPSLNHNEPRQVQKQTLRGS 69
+L+ NG +V ++ + P+L H R+ + GS
Sbjct: 40 MLFSNGALVDANHNNSHFFPNLLHGNTRRKGNKEESGS 77
>TAIR|locus:2085964 [details] [associations]
symbol:BHLH32 "AT3G25710" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009718
"anthocyanin-containing compound biosynthetic process"
evidence=IMP] [GO:0016036 "cellular response to phosphate
starvation" evidence=IMP] [GO:0080147 "root hair cell development"
evidence=IMP] [GO:0048364 "root development" evidence=IEP]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB028607
GO:GO:0003677 GO:GO:0009718 GO:GO:0003700 GO:GO:0006351
Gene3D:4.10.280.10 SUPFAM:SSF47459 GO:GO:0016036
HOGENOM:HOG000243133 ProtClustDB:CLSN2689090 EMBL:DQ205679
EMBL:AY058840 EMBL:AY079033 EMBL:AY086383 EMBL:AF488571
IPI:IPI00523379 RefSeq:NP_189199.1 UniGene:At.22148
ProteinModelPortal:Q9LS08 SMR:Q9LS08 IntAct:Q9LS08 STRING:Q9LS08
PRIDE:Q9LS08 EnsemblPlants:AT3G25710.1 GeneID:822159
KEGG:ath:AT3G25710 TAIR:At3g25710 eggNOG:NOG304577 OMA:RERINTH
PhylomeDB:Q9LS08 Genevestigator:Q9LS08 GO:GO:0080147 Uniprot:Q9LS08
Length = 344
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 312 GFESGA-GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASM 370
GF+ G +AQ + A++ H+ +ERRRR+RIN + L+ ++P+ KTDKAS+
Sbjct: 110 GFDGEIMGKLSAQEVMDAKALAASKSHSEAERRRRERINTHLAKLRSILPNTTKTDKASL 169
Query: 371 LDEAIEY 377
L E I++
Sbjct: 170 LAEVIQH 176
>UNIPROTKB|Q6ZA99 [details] [associations]
symbol:P0431A03.9 "Os08g0432800 protein" species:39947
"Oryza sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:AP008214 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:AP004666 EMBL:AK109616 RefSeq:NP_001061870.1
UniGene:Os.56209 EnsemblPlants:LOC_Os08g33590.1 GeneID:4345648
KEGG:osa:4345648 eggNOG:NOG311977 OMA:TSAMMED
ProtClustDB:CLSN2697339 Uniprot:Q6ZA99
Length = 345
Score = 122 (48.0 bits), Expect = 0.00016, P = 0.00016
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
G TA+ + A+ H+ +ERRRR RIN + L+ L+P+ KTDKAS+L E IE+
Sbjct: 106 GRMTAKEIMDAKALAASRSHSEAERRRRQRINGHLARLRSLLPNTTKTDKASLLAEVIEH 165
>UNIPROTKB|Q6ESL3 [details] [associations]
symbol:OJ1294_G06.8 "DNA binding protein-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP005093 ProteinModelPortal:Q6ESL3
EnsemblPlants:LOC_Os09g24490.1 KEGG:dosa:Os09t0410700-00
Gramene:Q6ESL3 OMA:RRHECIA Uniprot:Q6ESL3
Length = 363
Score = 121 (47.7 bits), Expect = 0.00022, P = 0.00022
Identities = 26/60 (43%), Positives = 37/60 (61%)
Query: 318 GNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
G TA+ + A+ H+ +ERRRR RIN + L+ L+P+ KTDKAS+L E IE+
Sbjct: 91 GRVTAREIMDAKALAASRSHSEAERRRRQRINGHLARLRSLLPNTTKTDKASLLAEVIEH 150
>UNIPROTKB|Q8W5G3 [details] [associations]
symbol:OSJNBa0002J24.23 "Helix-loop-helix DNA-binding
domain containing protein, expressed" species:39947 "Oryza sativa
Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 GO:GO:0003677 EMBL:DP000009 Gene3D:4.10.280.10
SUPFAM:SSF47459 EMBL:CM000140 HOGENOM:HOG000240244 EMBL:AC090713
EnsemblPlants:LOC_Os03g55550.1 eggNOG:NOG237829 OMA:WIWERRR
Uniprot:Q8W5G3
Length = 310
Score = 117 (46.2 bits), Expect = 0.00046, P = 0.00046
Identities = 36/96 (37%), Positives = 50/96 (52%)
Query: 282 NRTSKQSTGDNSLKRKSRDAVDSECQSEAAGFESGAGNKTAQRSGSCRRSRAAEVHNLSE 341
N+ S QS G S + V+ AG G K R RRS A +L
Sbjct: 175 NQESMQS-GSCSDNESNCSQVNRRKVDRVAG---GGNGKVPAR----RRS-ATIAQSLYA 225
Query: 342 RRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
RRRR+RIN ++R LQ+L+P+ K D ++ML+EA+ Y
Sbjct: 226 RRRRERINGRLRILQKLVPNGTKVDISTMLEEAVHY 261
>TAIR|locus:2035237 [details] [associations]
symbol:AT1G01260 "AT1G01260" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0009694 "jasmonic acid metabolic process" evidence=RCA]
[GO:0009753 "response to jasmonic acid stimulus" evidence=RCA]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
eggNOG:NOG313259 HOGENOM:HOG000238207 InterPro:IPR025610
Pfam:PF14215 EMBL:AF251698 EMBL:AC023628 EMBL:AF488559
EMBL:AY079012 EMBL:AY120752 EMBL:BT004517 IPI:IPI00539052
PIR:H86142 RefSeq:NP_001077440.1 RefSeq:NP_001184883.1
RefSeq:NP_171634.1 UniGene:At.28312 ProteinModelPortal:Q9LNJ5
SMR:Q9LNJ5 IntAct:Q9LNJ5 EnsemblPlants:AT1G01260.1
EnsemblPlants:AT1G01260.2 EnsemblPlants:AT1G01260.3 GeneID:839545
KEGG:ath:AT1G01260 TAIR:At1g01260 InParanoid:Q9LNJ5 OMA:FPANYCY
PhylomeDB:Q9LNJ5 ProtClustDB:CLSN2682849 Genevestigator:Q9LNJ5
Uniprot:Q9LNJ5
Length = 590
Score = 121 (47.7 bits), Expect = 0.00048, P = 0.00048
Identities = 22/71 (30%), Positives = 46/71 (64%)
Query: 308 SEAAGFESGAGNKTAQRSGSCRRSRAAEVHNL-SERRRRDRINEKMRALQELIPHCNKTD 366
++A G + N+ +R RA ++++ +ER+RR+++N++ AL+ ++P+ +K D
Sbjct: 404 ADAVGADESGNNRPRKRGRRPANGRAEALNHVEAERQRREKLNQRFYALRSVVPNISKMD 463
Query: 367 KASMLDEAIEY 377
KAS+L +A+ Y
Sbjct: 464 KASLLGDAVSY 474
>UNIPROTKB|Q657A4 [details] [associations]
symbol:P0022F12.30 "Regulatory protein B-Peru-like"
species:39947 "Oryza sativa Japonica Group" [GO:0005634 "nucleus"
evidence=IC] InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888
SMART:SM00353 GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP002908 EMBL:AP003310 EnsemblPlants:LOC_Os01g39580.1
Uniprot:Q657A4
Length = 370
Score = 118 (46.6 bits), Expect = 0.00050, P = 0.00050
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 375
G G + +GSC + + H +SERRRR+++NE L+ L+P +K DKAS+L E I
Sbjct: 172 GGGAWMNRAAGSC----SIKNHVMSERRRREKLNEMFLILKSLVPSIDKVDKASILSETI 227
Query: 376 EY 377
Y
Sbjct: 228 AY 229
>UNIPROTKB|Q69TX2 [details] [associations]
symbol:P0021C04.13 "BHLH protein-like" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AP004687
ProteinModelPortal:Q69TX2 EnsemblPlants:LOC_Os06g10820.1
Gramene:Q69TX2 HOGENOM:HOG000241748 Uniprot:Q69TX2
Length = 211
Score = 112 (44.5 bits), Expect = 0.00062, P = 0.00062
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 329 RRSR-AAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
R +R ++E +++ R RR+R++++MRALQ L+P + D ASML+EAI Y
Sbjct: 116 RNARVSSEPQSVAARLRRERVSQRMRALQRLVPGGARLDTASMLEEAIRY 165
>TAIR|locus:2008693 [details] [associations]
symbol:FBH1 "AT1G35460" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AF488612 EMBL:AC023064 EMBL:AF411791 EMBL:AY093794
IPI:IPI00538359 PIR:F86475 RefSeq:NP_174776.1 UniGene:At.18017
ProteinModelPortal:Q9C8P8 SMR:Q9C8P8 PRIDE:Q9C8P8
EnsemblPlants:AT1G35460.1 GeneID:840438 KEGG:ath:AT1G35460
TAIR:At1g35460 eggNOG:NOG263612 HOGENOM:HOG000095218
InParanoid:Q9C8P8 OMA:NLCLTEL PhylomeDB:Q9C8P8
ProtClustDB:CLSN2679906 Genevestigator:Q9C8P8 Uniprot:Q9C8P8
Length = 259
Score = 114 (45.2 bits), Expect = 0.00066, P = 0.00066
Identities = 23/50 (46%), Positives = 37/50 (74%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNK-TDKASMLDEAIEY 377
+R A +++ER RR RI++++R LQEL+P+ +K T+ A ML+EA+EY
Sbjct: 184 KRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEY 233
>UNIPROTKB|Q651K2 [details] [associations]
symbol:B1089G05.30 "BHLH protein-like" species:39947 "Oryza
sativa Japonica Group" [GO:0005634 "nucleus" evidence=IC]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:CM000143 Gene3D:4.10.280.10 SUPFAM:SSF47459
EMBL:AP005967 EnsemblPlants:LOC_Os06g30090.1 Uniprot:Q651K2
Length = 294
Score = 114 (45.2 bits), Expect = 0.00089, P = 0.00089
Identities = 22/49 (44%), Positives = 33/49 (67%)
Query: 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
+R+ E + + + RR+RI+E++RALQEL+P K D +MLD AI Y
Sbjct: 192 QRANNKETQSSAAKSRRERISERLRALQELVPSGGKVDMVTMLDRAISY 240
>TAIR|locus:2062230 [details] [associations]
symbol:AT2G22760 "AT2G22760" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
InterPro:IPR011598 Pfam:PF00010 PROSITE:PS50888 SMART:SM00353
GO:GO:0005634 EMBL:AC005617 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC006340
Gene3D:4.10.280.10 SUPFAM:SSF47459 HOGENOM:HOG000240300
EMBL:AF488563 EMBL:DQ446550 EMBL:DQ653016 IPI:IPI00530407
PIR:E84616 RefSeq:NP_179861.2 UniGene:At.39393
ProteinModelPortal:Q1PF16 SMR:Q1PF16 IntAct:Q1PF16 PRIDE:Q1PF16
EnsemblPlants:AT2G22760.1 GeneID:816806 KEGG:ath:AT2G22760
TAIR:At2g22760 eggNOG:NOG292366 InParanoid:Q1PF16 OMA:GCMINIL
PhylomeDB:Q1PF16 ProtClustDB:CLSN2690866 Genevestigator:Q1PF16
Uniprot:Q1PF16
Length = 295
Score = 114 (45.2 bits), Expect = 0.00089, P = 0.00089
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 316 GAGNKTAQRSGSCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAI 375
G G K S R A+ H L+ER+RR++++EK AL L+P K DK ++LD+AI
Sbjct: 99 GRGTKRKTCSHGTRSPVLAKEHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDAI 158
>TAIR|locus:2144791 [details] [associations]
symbol:HEC3 "AT5G09750" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0010500 "transmitting tissue development" evidence=IGI]
[GO:0048462 "carpel formation" evidence=IMP] InterPro:IPR011598
Pfam:PF00010 PROSITE:PS50888 SMART:SM00353 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:4.10.280.10 SUPFAM:SSF47459 EMBL:AB020752
EMBL:AL353994 GO:GO:0048462 GO:GO:0010500 IPI:IPI00522404
PIR:T49923 RefSeq:NP_196537.1 UniGene:At.65500
ProteinModelPortal:Q9LXD8 SMR:Q9LXD8 IntAct:Q9LXD8 STRING:Q9LXD8
EnsemblPlants:AT5G09750.1 GeneID:830835 KEGG:ath:AT5G09750
TAIR:At5g09750 eggNOG:NOG238444 HOGENOM:HOG000210013
InParanoid:Q9LXD8 OMA:NDPIGMA ProtClustDB:CLSN2916890
Genevestigator:Q9LXD8 Uniprot:Q9LXD8
Length = 224
Score = 111 (44.1 bits), Expect = 0.00098, P = 0.00098
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 338 NLSERRRRDRINEKMRALQELIPHCNKTDKASMLDEAIEY 377
+++ R RR+RI+E++R LQ L+P K D ASMLDEAI Y
Sbjct: 131 SVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRY 170
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.313 0.127 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 532 502 0.00085 119 3 11 23 0.44 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 88
No. of states in DFA: 616 (65 KB)
Total size of DFA: 303 KB (2157 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 46.65u 0.08s 46.73t Elapsed: 00:00:02
Total cpu time: 46.67u 0.08s 46.75t Elapsed: 00:00:02
Start: Fri May 10 06:16:05 2013 End: Fri May 10 06:16:07 2013