Query 009521
Match_columns 532
No_of_seqs 274 out of 1124
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 14:07:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.4 4.7E-13 1E-17 104.6 6.4 54 333-386 4-60 (60)
2 PF00010 HLH: Helix-loop-helix 99.4 6.1E-13 1.3E-17 103.6 5.5 49 334-382 2-55 (55)
3 KOG1318 Helix loop helix trans 99.3 2E-12 4.3E-17 136.9 6.2 62 327-388 227-292 (411)
4 smart00353 HLH helix loop heli 99.3 5.3E-12 1.2E-16 96.9 6.7 49 338-386 1-52 (53)
5 KOG1319 bHLHZip transcription 98.9 9.3E-10 2E-14 105.7 5.0 56 334-389 63-125 (229)
6 KOG4304 Transcriptional repres 98.7 7.3E-09 1.6E-13 104.5 4.4 53 334-386 33-93 (250)
7 KOG3561 Aryl-hydrocarbon recep 98.7 1.2E-08 2.6E-13 116.0 6.5 80 334-415 21-106 (803)
8 KOG2483 Upstream transcription 98.1 7.3E-06 1.6E-10 82.1 7.6 55 334-388 60-117 (232)
9 KOG2588 Predicted DNA-binding 98.0 2.3E-06 4.9E-11 98.3 2.3 56 334-389 277-333 (953)
10 KOG3960 Myogenic helix-loop-he 98.0 1.3E-05 2.8E-10 80.5 7.3 57 337-393 122-180 (284)
11 KOG0561 bHLH transcription fac 97.6 8.6E-05 1.9E-09 76.5 5.1 55 333-387 60-116 (373)
12 KOG4029 Transcription factor H 97.5 9.9E-05 2.1E-09 73.3 4.2 53 336-388 112-168 (228)
13 PLN03217 transcription factor 97.4 0.0004 8.6E-09 59.7 5.9 45 345-389 19-69 (93)
14 KOG3910 Helix loop helix trans 96.7 0.0022 4.8E-08 69.9 5.9 54 334-387 527-584 (632)
15 KOG4447 Transcription factor T 94.6 0.017 3.8E-07 54.8 1.7 52 335-386 80-133 (173)
16 KOG3898 Transcription factor N 94.2 0.09 2E-06 53.7 6.1 51 335-385 74-127 (254)
17 KOG3560 Aryl-hydrocarbon recep 93.9 0.047 1E-06 60.6 3.6 39 342-380 34-76 (712)
18 KOG3558 Hypoxia-inducible fact 91.5 0.14 3.1E-06 58.3 3.2 47 335-381 48-98 (768)
19 KOG4395 Transcription factor A 84.8 4.3 9.4E-05 41.8 8.3 53 334-386 175-230 (285)
20 KOG3559 Transcriptional regula 84.3 0.91 2E-05 49.4 3.5 45 340-384 8-56 (598)
21 KOG3582 Mlx interactors and re 45.2 5.6 0.00012 46.0 -0.8 54 335-388 653-711 (856)
22 KOG4447 Transcription factor T 36.7 23 0.0005 34.2 2.0 44 340-383 29-74 (173)
23 COG4710 Predicted DNA-binding 26.1 2.2E+02 0.0048 24.5 5.8 44 347-394 15-62 (80)
24 PF15392 Joubert: Joubert synd 25.5 1.6E+02 0.0035 31.5 6.1 56 333-388 56-116 (329)
25 PF07908 D-aminoacyl_C: D-amin 20.7 53 0.0012 25.3 1.1 16 28-43 18-33 (48)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.40 E-value=4.7e-13 Score=104.62 Aligned_cols=54 Identities=50% Similarity=0.773 Sum_probs=50.3
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHHHHH
Q 009521 333 AAEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 386 (532)
Q Consensus 333 ~~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~---~K~dKasIL~~AI~YIk~Lq~qvq 386 (532)
.+..|+..||+||++||+.|..|+.+||.+ .|++|++||..||+||++|+.+++
T Consensus 4 ~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 4 RREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 356899999999999999999999999988 789999999999999999998763
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.38 E-value=6.1e-13 Score=103.58 Aligned_cols=49 Identities=55% Similarity=0.889 Sum_probs=46.3
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCC-----CCCchhhHHHHHHHHHHHHH
Q 009521 334 AEVHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 382 (532)
Q Consensus 334 ~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~-----~K~dKasIL~~AI~YIk~Lq 382 (532)
+..|+..||+||++||+.|.+|+++||.+ .|++|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 45799999999999999999999999988 58999999999999999997
No 3
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.31 E-value=2e-12 Score=136.95 Aligned_cols=62 Identities=40% Similarity=0.730 Sum_probs=55.6
Q ss_pred ccccchhhhhcchhhHHHHHHHHHHHHHHHhhCCCCC----CCchhhHHHHHHHHHHHHHHHHHHh
Q 009521 327 SCRRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQMS 388 (532)
Q Consensus 327 ~~rr~r~~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~~----K~dKasIL~~AI~YIk~Lq~qvq~L 388 (532)
..|.+|+|+.||++|||||++||++|++|..|||.|+ |..|..||..+++||+.||+..++.
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 4455666789999999999999999999999999995 6779999999999999999988854
No 4
>smart00353 HLH helix loop helix domain.
Probab=99.30 E-value=5.3e-12 Score=96.93 Aligned_cols=49 Identities=53% Similarity=0.736 Sum_probs=45.7
Q ss_pred chhhHHHHHHHHHHHHHHHhhCCC---CCCCchhhHHHHHHHHHHHHHHHHH
Q 009521 338 NLSERRRRDRINEKMRALQELIPH---CNKTDKASMLDEAIEYLKSLQLQLQ 386 (532)
Q Consensus 338 n~~ERrRR~kINe~~~~Lr~LVP~---~~K~dKasIL~~AI~YIk~Lq~qvq 386 (532)
|..||+||++||+.|..|+.+||. ..|++|++||.+||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999995 5689999999999999999999886
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.92 E-value=9.3e-10 Score=105.66 Aligned_cols=56 Identities=32% Similarity=0.595 Sum_probs=50.4
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCCC-------CCchhhHHHHHHHHHHHHHHHHHHhh
Q 009521 334 AEVHNLSERRRRDRINEKMRALQELIPHCN-------KTDKASMLDEAIEYLKSLQLQLQMSQ 389 (532)
Q Consensus 334 ~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~~-------K~dKasIL~~AI~YIk~Lq~qvq~Le 389 (532)
+..|...||+|||-||..+..|++|||.|. |+.||.||.++|+||.+|.+++.+-|
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe 125 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQE 125 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447999999999999999999999999774 88899999999999999998776543
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.74 E-value=7.3e-09 Score=104.46 Aligned_cols=53 Identities=36% Similarity=0.540 Sum_probs=47.5
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCC--------CCCchhhHHHHHHHHHHHHHHHHH
Q 009521 334 AEVHNLSERRRRDRINEKMRALQELIPHC--------NKTDKASMLDEAIEYLKSLQLQLQ 386 (532)
Q Consensus 334 ~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~--------~K~dKasIL~~AI~YIk~Lq~qvq 386 (532)
+..|-++|||||+|||+.|.+|++||+.+ .|++||.||+.|++|++.|+...+
T Consensus 33 k~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 33 KVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 34688999999999999999999999933 478999999999999999998655
No 7
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.73 E-value=1.2e-08 Score=115.99 Aligned_cols=80 Identities=26% Similarity=0.390 Sum_probs=64.6
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCCC----CCchhhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCC--cchhh
Q 009521 334 AEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQMSQVMWMGSGMAPLMF--PGMQH 407 (532)
Q Consensus 334 ~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~~----K~dKasIL~~AI~YIk~Lq~qvq~Le~~~m~~~~~p~~~--p~~~~ 407 (532)
+++|+.+||||||++|..|.+|.+|||.|. |+||.+||++||.+||.+++.- ++.......+.|.++ +.+.+
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~~--~~~~~~~~d~KpSflS~~eL~~ 98 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQE--SENSSIDQDYKPSFLSNDELTH 98 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhhh--cccccccccccccccchHHHHH
Confidence 568999999999999999999999999996 9999999999999999998863 234455566777665 45666
Q ss_pred hHhhhcCC
Q 009521 408 YMSRMGMG 415 (532)
Q Consensus 408 ~~~~~~~~ 415 (532)
+|-.+..|
T Consensus 99 LmLeAlDG 106 (803)
T KOG3561|consen 99 LILEALDG 106 (803)
T ss_pred HHHHHhcC
Confidence 66655444
No 8
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.10 E-value=7.3e-06 Score=82.10 Aligned_cols=55 Identities=29% Similarity=0.472 Sum_probs=47.7
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCCC--CCc-hhhHHHHHHHHHHHHHHHHHHh
Q 009521 334 AEVHNLSERRRRDRINEKMRALQELIPHCN--KTD-KASMLDEAIEYLKSLQLQLQMS 388 (532)
Q Consensus 334 ~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~~--K~d-KasIL~~AI~YIk~Lq~qvq~L 388 (532)
+..||.-||+||+.|.++|..|+.+||... |.. .++||++|++||++|+.+....
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~ 117 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQ 117 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence 458999999999999999999999999764 333 7999999999999999876543
No 9
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.01 E-value=2.3e-06 Score=98.30 Aligned_cols=56 Identities=36% Similarity=0.571 Sum_probs=51.8
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCCC-CCchhhHHHHHHHHHHHHHHHHHHhh
Q 009521 334 AEVHNLSERRRRDRINEKMRALQELIPHCN-KTDKASMLDEAIEYLKSLQLQLQMSQ 389 (532)
Q Consensus 334 ~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~~-K~dKasIL~~AI~YIk~Lq~qvq~Le 389 (532)
|.+||++|||.|..||++|.+|+.+||+.. |+.|..+|.+||+||++|+...+.|.
T Consensus 277 RtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk 333 (953)
T KOG2588|consen 277 RTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLK 333 (953)
T ss_pred cchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccc
Confidence 458999999999999999999999999885 99999999999999999999877663
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.01 E-value=1.3e-05 Score=80.53 Aligned_cols=57 Identities=30% Similarity=0.403 Sum_probs=48.6
Q ss_pred cchhhHHHHHHHHHHHHHHHhh-CCCCC-CCchhhHHHHHHHHHHHHHHHHHHhhhhcc
Q 009521 337 HNLSERRRRDRINEKMRALQEL-IPHCN-KTDKASMLDEAIEYLKSLQLQLQMSQVMWM 393 (532)
Q Consensus 337 Hn~~ERrRR~kINe~~~~Lr~L-VP~~~-K~dKasIL~~AI~YIk~Lq~qvq~Le~~~m 393 (532)
-.+.||||=.||||.|.+|+.- +++-+ .+-|..||..||+||+.||.-++++..+..
T Consensus 122 ATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~ 180 (284)
T KOG3960|consen 122 ATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEK 180 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 4689999999999999999875 55554 689999999999999999999998755443
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.56 E-value=8.6e-05 Score=76.46 Aligned_cols=55 Identities=31% Similarity=0.510 Sum_probs=48.9
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHhhCCCC--CCCchhhHHHHHHHHHHHHHHHHHH
Q 009521 333 AAEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQM 387 (532)
Q Consensus 333 ~~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~--~K~dKasIL~~AI~YIk~Lq~qvq~ 387 (532)
+++.-|.-||||=.-||..|..||.|||.. .|++||.||+.+.+||.+|+.+.-+
T Consensus 60 RReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ 116 (373)
T KOG0561|consen 60 RREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTE 116 (373)
T ss_pred HHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccc
Confidence 356778899999999999999999999976 5999999999999999999876444
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.48 E-value=9.9e-05 Score=73.32 Aligned_cols=53 Identities=28% Similarity=0.427 Sum_probs=48.1
Q ss_pred hcchhhHHHHHHHHHHHHHHHhhCCC----CCCCchhhHHHHHHHHHHHHHHHHHHh
Q 009521 336 VHNLSERRRRDRINEKMRALQELIPH----CNKTDKASMLDEAIEYLKSLQLQLQMS 388 (532)
Q Consensus 336 ~Hn~~ERrRR~kINe~~~~Lr~LVP~----~~K~dKasIL~~AI~YIk~Lq~qvq~L 388 (532)
.+|..||.|=..||..|..||.+||. .+|+.|..+|..||.||++|+.-++.-
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~ 168 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQ 168 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccc
Confidence 47788999999999999999999993 568999999999999999999988843
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.36 E-value=0.0004 Score=59.73 Aligned_cols=45 Identities=27% Similarity=0.534 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhCCC------CCCCchhhHHHHHHHHHHHHHHHHHHhh
Q 009521 345 RDRINEKMRALQELIPH------CNKTDKASMLDEAIEYLKSLQLQLQMSQ 389 (532)
Q Consensus 345 R~kINe~~~~Lr~LVP~------~~K~dKasIL~~AI~YIk~Lq~qvq~Le 389 (532)
-|.||+-+..|+.|+|. ..|..-+-||++++.||+.|+.+|..|.
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLS 69 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLS 69 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999994 3467788899999999999999999884
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.74 E-value=0.0022 Score=69.93 Aligned_cols=54 Identities=28% Similarity=0.329 Sum_probs=46.4
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCCCC----CchhhHHHHHHHHHHHHHHHHHH
Q 009521 334 AEVHNLSERRRRDRINEKMRALQELIPHCNK----TDKASMLDEAIEYLKSLQLQLQM 387 (532)
Q Consensus 334 ~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~~K----~dKasIL~~AI~YIk~Lq~qvq~ 387 (532)
+...|..||-|-..|||.|++|-.+.----| --|..||..||.-|-.|++||.+
T Consensus 527 R~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 527 RMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 4468999999999999999999998663333 35999999999999999999993
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=94.60 E-value=0.017 Score=54.77 Aligned_cols=52 Identities=35% Similarity=0.490 Sum_probs=46.8
Q ss_pred hhcchhhHHHHHHHHHHHHHHHhhCCCC--CCCchhhHHHHHHHHHHHHHHHHH
Q 009521 335 EVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQ 386 (532)
Q Consensus 335 ~~Hn~~ERrRR~kINe~~~~Lr~LVP~~--~K~dKasIL~~AI~YIk~Lq~qvq 386 (532)
--||+.||+|-..+|+.|.+||.+||.. .|++|.-.|+-|..||-+|=+-++
T Consensus 80 v~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 80 VMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 3699999999999999999999999955 699999999999999999876554
No 16
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=94.21 E-value=0.09 Score=53.68 Aligned_cols=51 Identities=35% Similarity=0.456 Sum_probs=44.1
Q ss_pred hhcchhhHHHHHHHHHHHHHHHhhCCC---CCCCchhhHHHHHHHHHHHHHHHH
Q 009521 335 EVHNLSERRRRDRINEKMRALQELIPH---CNKTDKASMLDEAIEYLKSLQLQL 385 (532)
Q Consensus 335 ~~Hn~~ERrRR~kINe~~~~Lr~LVP~---~~K~dKasIL~~AI~YIk~Lq~qv 385 (532)
..=|..||+|=-.+|+.|..||++||. ..|+.|+..|.-|-+||..|++-.
T Consensus 74 ~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 74 LKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred ccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 345778999999999999999999994 358999999999999999998643
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=93.93 E-value=0.047 Score=60.65 Aligned_cols=39 Identities=38% Similarity=0.674 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHhhCC----CCCCCchhhHHHHHHHHHHH
Q 009521 342 RRRRDRINEKMRALQELIP----HCNKTDKASMLDEAIEYLKS 380 (532)
Q Consensus 342 RrRR~kINe~~~~Lr~LVP----~~~K~dKasIL~~AI~YIk~ 380 (532)
||-|||+|..|+.|..|+| -.+|+||.+||.-+|-|++.
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLRV 76 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHHH
Confidence 6789999999999999999 34699999999999999864
No 18
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=91.46 E-value=0.14 Score=58.30 Aligned_cols=47 Identities=34% Similarity=0.470 Sum_probs=39.3
Q ss_pred hhcchhhHHHHHHHHHHHHHHHhhCCCC----CCCchhhHHHHHHHHHHHH
Q 009521 335 EVHNLSERRRRDRINEKMRALQELIPHC----NKTDKASMLDEAIEYLKSL 381 (532)
Q Consensus 335 ~~Hn~~ERrRR~kINe~~~~Lr~LVP~~----~K~dKasIL~~AI~YIk~L 381 (532)
|.-.-+-|.||-|-|+-|.+|..+||-- ..+|||+|+.-||-|+|-=
T Consensus 48 EkSRdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRlr 98 (768)
T KOG3558|consen 48 EKSRDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRLR 98 (768)
T ss_pred hhhhhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHHH
Confidence 3344567999999999999999999932 3689999999999999743
No 19
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=84.79 E-value=4.3 Score=41.81 Aligned_cols=53 Identities=28% Similarity=0.369 Sum_probs=46.9
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCCC---CCchhhHHHHHHHHHHHHHHHHH
Q 009521 334 AEVHNLSERRRRDRINEKMRALQELIPHCN---KTDKASMLDEAIEYLKSLQLQLQ 386 (532)
Q Consensus 334 ~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~~---K~dKasIL~~AI~YIk~Lq~qvq 386 (532)
+..-|..||+|=..+|..|+.||.+||... |+.|-..|..|-.||--|-..++
T Consensus 175 r~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 175 RLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 446789999999999999999999999664 78999999999999998877665
No 20
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=84.30 E-value=0.91 Score=49.39 Aligned_cols=45 Identities=31% Similarity=0.483 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCC----CCCchhhHHHHHHHHHHHHHHH
Q 009521 340 SERRRRDRINEKMRALQELIPHC----NKTDKASMLDEAIEYLKSLQLQ 384 (532)
Q Consensus 340 ~ERrRR~kINe~~~~Lr~LVP~~----~K~dKasIL~~AI~YIk~Lq~q 384 (532)
+.|.||++-|..|.+|..++|-. ..+||++|+.-+..|||--.--
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~vF 56 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRNVF 56 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHHhc
Confidence 45899999999999999999944 3599999999999999865443
No 21
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=45.25 E-value=5.6 Score=46.04 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=46.3
Q ss_pred hhcchhhHHHHHHHHHHHHHHHhhCCCCC-----CCchhhHHHHHHHHHHHHHHHHHHh
Q 009521 335 EVHNLSERRRRDRINEKMRALQELIPHCN-----KTDKASMLDEAIEYLKSLQLQLQMS 388 (532)
Q Consensus 335 ~~Hn~~ERrRR~kINe~~~~Lr~LVP~~~-----K~dKasIL~~AI~YIk~Lq~qvq~L 388 (532)
-.|.-+|.+||.+|.-.+..|-.++-+.. |+.++.-|.+.++||..++.+...+
T Consensus 653 it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v 711 (856)
T KOG3582|consen 653 ITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPV 711 (856)
T ss_pred ccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhcccc
Confidence 46999999999999999999999998664 6778888999999999888765543
No 22
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=36.69 E-value=23 Score=34.23 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCCC--CCchhhHHHHHHHHHHHHHH
Q 009521 340 SERRRRDRINEKMRALQELIPHCN--KTDKASMLDEAIEYLKSLQL 383 (532)
Q Consensus 340 ~ERrRR~kINe~~~~Lr~LVP~~~--K~dKasIL~~AI~YIk~Lq~ 383 (532)
.|+.|..++|+.+.-|+.|+|+.. ++.+.--|.-+-+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 588999999999999999999763 44444446666666666654
No 23
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=26.14 E-value=2.2e+02 Score=24.52 Aligned_cols=44 Identities=23% Similarity=0.360 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhCCCCCCCchhhHHHHHHH-HHHHHHH---HHHHhhhhccC
Q 009521 347 RINEKMRALQELIPHCNKTDKASMLDEAIE-YLKSLQL---QLQMSQVMWMG 394 (532)
Q Consensus 347 kINe~~~~Lr~LVP~~~K~dKasIL~~AI~-YIk~Lq~---qvq~Le~~~m~ 394 (532)
.+.+++..|.+- ..--|+.+|.+||+ ||...+. .+..||...-|
T Consensus 15 E~~eRL~~Ls~~----tgrtkayyvrEaIE~~ieemED~ylA~~aler~k~G 62 (80)
T COG4710 15 ELKERLDNLSKN----TGRTKAYYVREAIEAYIEEMEDFYLAVNALERLKDG 62 (80)
T ss_pred HHHHHHHHHHHh----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 355666666652 22369999999997 6665553 55556655543
No 24
>PF15392 Joubert: Joubert syndrome-associated
Probab=25.49 E-value=1.6e+02 Score=31.53 Aligned_cols=56 Identities=20% Similarity=0.389 Sum_probs=37.8
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHhhC-----CCCCCCchhhHHHHHHHHHHHHHHHHHHh
Q 009521 333 AAEVHNLSERRRRDRINEKMRALQELI-----PHCNKTDKASMLDEAIEYLKSLQLQLQMS 388 (532)
Q Consensus 333 ~~~~Hn~~ERrRR~kINe~~~~Lr~LV-----P~~~K~dKasIL~~AI~YIk~Lq~qvq~L 388 (532)
.++...+..|+||+||-+.+..|.++. |-|.+-+-..+-.+-|.-.+.++.+..+|
T Consensus 56 RrEIq~WMkRKrkERmaEYl~qlaEkR~qEH~PF~p~~~p~~~TSreIrl~QK~K~EKdRl 116 (329)
T PF15392_consen 56 RREIQAWMKRKRKERMAEYLKQLAEKREQEHKPFCPRSNPFYMTSREIRLRQKMKEEKDRL 116 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999887775 45554443444455555555555544443
No 25
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=20.65 E-value=53 Score=25.29 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=13.0
Q ss_pred chhhheeeCCeEEEee
Q 009521 28 ELVELLWQNGHVVLSS 43 (532)
Q Consensus 28 dlvELLW~NGQVV~qS 43 (532)
+=||.+|-||++|...
T Consensus 18 ~GI~~V~VNG~~vv~~ 33 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVED 33 (48)
T ss_dssp BSEEEEEETTEEEECT
T ss_pred CCEEEEEECCEEEEEC
Confidence 3478999999999743
Done!