Query 009521
Match_columns 532
No_of_seqs 274 out of 1124
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 07:04:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.6 3.1E-16 1.1E-20 131.5 6.7 59 332-390 5-64 (82)
2 4h10_B Circadian locomoter out 99.6 1.3E-15 4.3E-20 124.9 6.9 59 331-389 6-65 (71)
3 4ati_A MITF, microphthalmia-as 99.6 1.9E-15 6.4E-20 134.8 7.4 64 329-392 23-90 (118)
4 4h10_A ARYL hydrocarbon recept 99.6 1.2E-15 4.2E-20 125.6 3.5 56 329-384 5-64 (73)
5 1an4_A Protein (upstream stimu 99.5 8.4E-16 2.9E-20 123.0 2.0 53 334-386 6-64 (65)
6 1a0a_A BHLH, protein (phosphat 99.5 1.1E-15 3.7E-20 122.5 1.9 53 334-386 3-62 (63)
7 1hlo_A Protein (transcription 99.5 3.2E-14 1.1E-18 118.4 6.3 58 333-390 12-71 (80)
8 1nkp_B MAX protein, MYC proto- 99.5 4E-14 1.4E-18 118.4 6.5 57 334-390 3-61 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 8.1E-14 2.8E-18 118.4 6.5 56 334-389 7-65 (88)
10 3u5v_A Protein MAX, transcript 99.4 1.1E-13 3.7E-18 114.8 5.0 59 334-392 6-68 (76)
11 1nlw_A MAD protein, MAX dimeri 99.3 1.2E-12 4E-17 109.5 7.2 56 334-389 2-60 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.1 4.3E-11 1.5E-15 97.3 4.9 53 334-386 13-67 (68)
13 2ql2_B Neurod1, neurogenic dif 99.1 1.4E-10 4.9E-15 92.0 5.9 52 335-386 4-58 (60)
14 4f3l_A Mclock, circadian locom 99.1 1.3E-10 4.5E-15 119.0 6.8 54 333-386 12-66 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 3.9E-10 1.3E-14 116.9 5.7 55 330-384 10-68 (387)
16 4ath_A MITF, microphthalmia-as 98.7 2E-08 6.7E-13 84.5 6.3 46 344-389 3-52 (83)
17 2lfh_A DNA-binding protein inh 98.6 1.1E-08 3.8E-13 83.0 2.7 46 338-383 19-67 (68)
18 4aya_A DNA-binding protein inh 98.1 6.2E-06 2.1E-10 71.2 6.8 47 340-386 32-81 (97)
19 3muj_A Transcription factor CO 47.3 23 0.00079 32.2 5.0 35 347-381 95-133 (138)
20 2wt7_A Proto-oncogene protein 27.9 1.2E+02 0.004 23.5 5.6 21 337-357 10-30 (63)
21 3fx7_A Putative uncharacterize 24.8 1.3E+02 0.0044 25.6 5.7 43 344-394 46-88 (94)
22 1pd7_B MAD1; PAH2, SIN3, eukar 20.5 1E+02 0.0034 20.5 3.2 21 364-384 1-21 (26)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.63 E-value=3.1e-16 Score=131.47 Aligned_cols=59 Identities=32% Similarity=0.466 Sum_probs=55.3
Q ss_pred hhhhhcchhhHHHHHHHHHHHHHHHhhCCCC-CCCchhhHHHHHHHHHHHHHHHHHHhhh
Q 009521 332 RAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQLQLQMSQV 390 (532)
Q Consensus 332 r~~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~-~K~dKasIL~~AI~YIk~Lq~qvq~Le~ 390 (532)
..+..|+++||+||++||++|.+|+.|||++ .|+||++||++||+||++|+.+++.|+.
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~ 64 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQ 64 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999998 7999999999999999999999998854
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.59 E-value=1.3e-15 Score=124.89 Aligned_cols=59 Identities=25% Similarity=0.434 Sum_probs=53.5
Q ss_pred chhhhhcchhhHHHHHHHHHHHHHHHhhCCCC-CCCchhhHHHHHHHHHHHHHHHHHHhh
Q 009521 331 SRAAEVHNLSERRRRDRINEKMRALQELIPHC-NKTDKASMLDEAIEYLKSLQLQLQMSQ 389 (532)
Q Consensus 331 ~r~~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~-~K~dKasIL~~AI~YIk~Lq~qvq~Le 389 (532)
...+.+|+++||+||++||++|.+|+.|||.+ .|+||++||++||+||+.||.++.=||
T Consensus 6 ~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 6 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34467899999999999999999999999975 599999999999999999999988554
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.58 E-value=1.9e-15 Score=134.82 Aligned_cols=64 Identities=33% Similarity=0.591 Sum_probs=51.8
Q ss_pred ccchhhhhcchhhHHHHHHHHHHHHHHHhhCCCCC----CCchhhHHHHHHHHHHHHHHHHHHhhhhc
Q 009521 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQMSQVMW 392 (532)
Q Consensus 329 rr~r~~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~~----K~dKasIL~~AI~YIk~Lq~qvq~Le~~~ 392 (532)
++.+.+..|+++||+||++||++|.+|+.|||.|. |++|++||++||+||++||.+++.|+...
T Consensus 23 k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 23 KERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445668999999999999999999999999885 67899999999999999999999986543
No 4
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.55 E-value=1.2e-15 Score=125.60 Aligned_cols=56 Identities=38% Similarity=0.607 Sum_probs=51.0
Q ss_pred ccchhhhhcchhhHHHHHHHHHHHHHHHhhCCCC----CCCchhhHHHHHHHHHHHHHHH
Q 009521 329 RRSRAAEVHNLSERRRRDRINEKMRALQELIPHC----NKTDKASMLDEAIEYLKSLQLQ 384 (532)
Q Consensus 329 rr~r~~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~----~K~dKasIL~~AI~YIk~Lq~q 384 (532)
+.++++++|+++||+||++||+.|.+|+.|||.| .|+|||+||+.||+||+.|+..
T Consensus 5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 4556678999999999999999999999999987 6999999999999999999753
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.55 E-value=8.4e-16 Score=123.04 Aligned_cols=53 Identities=34% Similarity=0.567 Sum_probs=49.2
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCCC------CCchhhHHHHHHHHHHHHHHHHH
Q 009521 334 AEVHNLSERRRRDRINEKMRALQELIPHCN------KTDKASMLDEAIEYLKSLQLQLQ 386 (532)
Q Consensus 334 ~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~~------K~dKasIL~~AI~YIk~Lq~qvq 386 (532)
+..|+.+||+||++||+.|.+|+.|||.|. |++|++||++||+||++||++++
T Consensus 6 r~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 458999999999999999999999999886 78999999999999999998754
No 6
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.54 E-value=1.1e-15 Score=122.51 Aligned_cols=53 Identities=30% Similarity=0.476 Sum_probs=48.2
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCC-------CCCchhhHHHHHHHHHHHHHHHHH
Q 009521 334 AEVHNLSERRRRDRINEKMRALQELIPHC-------NKTDKASMLDEAIEYLKSLQLQLQ 386 (532)
Q Consensus 334 ~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~-------~K~dKasIL~~AI~YIk~Lq~qvq 386 (532)
+.+|+++||+||++||+.|.+|+.|||.+ .|++||+||+.||+||+.||++++
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 45899999999999999999999999966 467799999999999999998764
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.48 E-value=3.2e-14 Score=118.44 Aligned_cols=58 Identities=31% Similarity=0.552 Sum_probs=54.1
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHhhCCCC--CCCchhhHHHHHHHHHHHHHHHHHHhhh
Q 009521 333 AAEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQMSQV 390 (532)
Q Consensus 333 ~~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~--~K~dKasIL~~AI~YIk~Lq~qvq~Le~ 390 (532)
.+..|+.+||+||++||+.|..|+.+||.+ .|++|++||..||+||+.|+.+++.|+.
T Consensus 12 ~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~ 71 (80)
T 1hlo_A 12 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999987 5999999999999999999999998864
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.47 E-value=4e-14 Score=118.43 Aligned_cols=57 Identities=32% Similarity=0.564 Sum_probs=52.8
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCC--CCCchhhHHHHHHHHHHHHHHHHHHhhh
Q 009521 334 AEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQMSQV 390 (532)
Q Consensus 334 ~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~--~K~dKasIL~~AI~YIk~Lq~qvq~Le~ 390 (532)
+..||.+||+||++||+.|..|+.+||.+ .|++|++||.+||+||+.|+.+++.|+.
T Consensus 3 R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~ 61 (83)
T 1nkp_B 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQ 61 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999985 6999999999999999999999888753
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.45 E-value=8.1e-14 Score=118.38 Aligned_cols=56 Identities=32% Similarity=0.475 Sum_probs=52.1
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHHHHHHhh
Q 009521 334 AEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQMSQ 389 (532)
Q Consensus 334 ~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~---~K~dKasIL~~AI~YIk~Lq~qvq~Le 389 (532)
+..||..||+||++||++|..|+.+||.+ .|++|++||.+||+||++|+.+++.|+
T Consensus 7 R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~ 65 (88)
T 1nkp_A 7 RRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLI 65 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999976 599999999999999999999988764
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.41 E-value=1.1e-13 Score=114.83 Aligned_cols=59 Identities=29% Similarity=0.397 Sum_probs=50.8
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCC---CCCC-chhhHHHHHHHHHHHHHHHHHHhhhhc
Q 009521 334 AEVHNLSERRRRDRINEKMRALQELIPH---CNKT-DKASMLDEAIEYLKSLQLQLQMSQVMW 392 (532)
Q Consensus 334 ~~~Hn~~ERrRR~kINe~~~~Lr~LVP~---~~K~-dKasIL~~AI~YIk~Lq~qvq~Le~~~ 392 (532)
+..||..||+||++||++|.+|+.+||. ..|. +|+.||.+||+||++|++++++||...
T Consensus 6 R~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~~~ 68 (76)
T 3u5v_A 6 RAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNLNP 68 (76)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3479999999999999999999999995 3465 799999999999999999999887544
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.35 E-value=1.2e-12 Score=109.48 Aligned_cols=56 Identities=23% Similarity=0.309 Sum_probs=51.7
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHHHHHHhh
Q 009521 334 AEVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQMSQ 389 (532)
Q Consensus 334 ~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~---~K~dKasIL~~AI~YIk~Lq~qvq~Le 389 (532)
+..||..||+||+.||++|..|+++||.+ .|.+|+.||.+||+||+.|+.+.+.|+
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~ 60 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAV 60 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999999965 589999999999999999999998774
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.12 E-value=4.3e-11 Score=97.29 Aligned_cols=53 Identities=28% Similarity=0.481 Sum_probs=48.6
Q ss_pred hhhcchhhHHHHHHHHHHHHHHHhhCCCC--CCCchhhHHHHHHHHHHHHHHHHH
Q 009521 334 AEVHNLSERRRRDRINEKMRALQELIPHC--NKTDKASMLDEAIEYLKSLQLQLQ 386 (532)
Q Consensus 334 ~~~Hn~~ERrRR~kINe~~~~Lr~LVP~~--~K~dKasIL~~AI~YIk~Lq~qvq 386 (532)
+..||..||+|+..||+.|..|+.+||.. .|++|+.||..||+||++|++.++
T Consensus 13 R~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 13 RKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 45799999999999999999999999965 589999999999999999998654
No 13
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.07 E-value=1.4e-10 Score=92.00 Aligned_cols=52 Identities=27% Similarity=0.355 Sum_probs=48.0
Q ss_pred hhcchhhHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHHHHH
Q 009521 335 EVHNLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 386 (532)
Q Consensus 335 ~~Hn~~ERrRR~kINe~~~~Lr~LVP~~---~K~dKasIL~~AI~YIk~Lq~qvq 386 (532)
..||..||+|+..||+.|..|+.+||.. .|++|+.||..||+||+.|++.++
T Consensus 4 ~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 4 MKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4699999999999999999999999965 489999999999999999998765
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.06 E-value=1.3e-10 Score=118.96 Aligned_cols=54 Identities=28% Similarity=0.528 Sum_probs=43.6
Q ss_pred hhhhcchhhHHHHHHHHHHHHHHHhhCC-CCCCCchhhHHHHHHHHHHHHHHHHH
Q 009521 333 AAEVHNLSERRRRDRINEKMRALQELIP-HCNKTDKASMLDEAIEYLKSLQLQLQ 386 (532)
Q Consensus 333 ~~~~Hn~~ERrRR~kINe~~~~Lr~LVP-~~~K~dKasIL~~AI~YIk~Lq~qvq 386 (532)
.+..|+++||+||++||+.|.+|++||| ...|+||++||+.||+|||.|+....
T Consensus 12 ~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~~ 66 (361)
T 4f3l_A 12 KRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETTA 66 (361)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhcc
Confidence 3457999999999999999999999999 55799999999999999999987543
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.96 E-value=3.9e-10 Score=116.93 Aligned_cols=55 Identities=35% Similarity=0.515 Sum_probs=49.2
Q ss_pred cchhhhhcchhhHHHHHHHHHHHHHHHhhCC----CCCCCchhhHHHHHHHHHHHHHHH
Q 009521 330 RSRAAEVHNLSERRRRDRINEKMRALQELIP----HCNKTDKASMLDEAIEYLKSLQLQ 384 (532)
Q Consensus 330 r~r~~~~Hn~~ERrRR~kINe~~~~Lr~LVP----~~~K~dKasIL~~AI~YIk~Lq~q 384 (532)
.+.++++|+.+||+||+|||+.|.+|+.||| ...|+||++||+.||+|||.|+..
T Consensus 10 ~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 10 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 3455779999999999999999999999999 557999999999999999999843
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.70 E-value=2e-08 Score=84.45 Aligned_cols=46 Identities=30% Similarity=0.597 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhhCCCCC----CCchhhHHHHHHHHHHHHHHHHHHhh
Q 009521 344 RRDRINEKMRALQELIPHCN----KTDKASMLDEAIEYLKSLQLQLQMSQ 389 (532)
Q Consensus 344 RR~kINe~~~~Lr~LVP~~~----K~dKasIL~~AI~YIk~Lq~qvq~Le 389 (532)
-|++||++|.+|..|||.++ |.+|++||.+||+||++||++++.+.
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~ 52 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAK 52 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999999999874 68999999999999999999877663
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.63 E-value=1.1e-08 Score=82.99 Aligned_cols=46 Identities=24% Similarity=0.397 Sum_probs=42.1
Q ss_pred chhhHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHH
Q 009521 338 NLSERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQL 383 (532)
Q Consensus 338 n~~ERrRR~kINe~~~~Lr~LVP~~---~K~dKasIL~~AI~YIk~Lq~ 383 (532)
+..||+|+..||+.|..||.+||.. .|++|..||..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4668999999999999999999965 589999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.06 E-value=6.2e-06 Score=71.21 Aligned_cols=47 Identities=28% Similarity=0.456 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHHHHhhCCCC---CCCchhhHHHHHHHHHHHHHHHHH
Q 009521 340 SERRRRDRINEKMRALQELIPHC---NKTDKASMLDEAIEYLKSLQLQLQ 386 (532)
Q Consensus 340 ~ERrRR~kINe~~~~Lr~LVP~~---~K~dKasIL~~AI~YIk~Lq~qvq 386 (532)
.||.|=..||+.|..||.+||.. .|+.|..+|..||+||+.|++.++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~ 81 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALD 81 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 35778888999999999999965 489999999999999999999988
No 19
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=47.33 E-value=23 Score=32.22 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhhCCCC----CCCchhhHHHHHHHHHHHH
Q 009521 347 RINEKMRALQELIPHC----NKTDKASMLDEAIEYLKSL 381 (532)
Q Consensus 347 kINe~~~~Lr~LVP~~----~K~dKasIL~~AI~YIk~L 381 (532)
.|.-.|..|+++||.. .++-|-.||+.|.++++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4888999999999955 4788999999999998876
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.89 E-value=1.2e+02 Score=23.50 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=9.4
Q ss_pred cchhhHHHHHHHHHHHHHHHh
Q 009521 337 HNLSERRRRDRINEKMRALQE 357 (532)
Q Consensus 337 Hn~~ERrRR~kINe~~~~Lr~ 357 (532)
..++-++-|.+=.+++..|..
T Consensus 10 NR~AA~rcR~rKk~~~~~Le~ 30 (63)
T 2wt7_A 10 NKMAAAKCRNRRRELTDTLQA 30 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 21
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.81 E-value=1.3e+02 Score=25.64 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCchhhHHHHHHHHHHHHHHHHHHhhhhccC
Q 009521 344 RRDRINEKMRALQELIPHCNKTDKASMLDEAIEYLKSLQLQLQMSQVMWMG 394 (532)
Q Consensus 344 RR~kINe~~~~Lr~LVP~~~K~dKasIL~~AI~YIk~Lq~qvq~Le~~~m~ 394 (532)
.|+|+.+-|..|.+.+ .-..+.|=+||.+|.++|+.||.-+..
T Consensus 46 kr~kFee~fe~l~s~l--------~~f~e~a~e~vp~L~~~i~vle~~~~~ 88 (94)
T 3fx7_A 46 RRDKFSEVLDNLKSTF--------NEFDEAAQEQIAWLKERIRVLEEDYLE 88 (94)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH--------HHHHHhhHHHhHHHHHHHHHhHHHHHH
Confidence 3456666666665532 123457889999999999999876653
No 22
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=20.45 E-value=1e+02 Score=20.52 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=17.0
Q ss_pred CCchhhHHHHHHHHHHHHHHH
Q 009521 364 KTDKASMLDEAIEYLKSLQLQ 384 (532)
Q Consensus 364 K~dKasIL~~AI~YIk~Lq~q 384 (532)
|+.+..+|-+|.+||...+.+
T Consensus 1 ~~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 1 VRMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCCSTHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHh
Confidence 456788999999999987764
Done!