BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009522
         (532 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P11823|SHUT_ADE40 Shutoff protein OS=Human adenovirus F serotype 40 GN=L4 PE=2 SV=2
          Length = 770

 Score = 34.3 bits (77), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 54/132 (40%), Gaps = 17/132 (12%)

Query: 116 AQKEDSVATAEDDNRTLDSARNS--FSQSLKECQERRLRAEALSRRRPASLDLNNATFIS 173
           A  E +    EDD      AR S    ++LKEC +  L  E LSR   A+L         
Sbjct: 55  ALSEPNYLGGEDDVLLKHIARQSTIVREALKECTQTPLTVEELSRAYEANL--------F 106

Query: 174 SPRLGAMKK---SSNLSRKTGTFPSPGTPNYRNASVGMHKGWSSERVPLQTTGNRRQVGA 230
           SPR+   K+   +   + +   +P    P    A    H  + ++R+PL    NR + G 
Sbjct: 107 SPRVPPKKQPNGTCETNPRLNFYPVFAVP---EALATYHIFFKNQRIPLSCRANRTR-GD 162

Query: 231 ALLPFNNGRTLP 242
            LL    G  +P
Sbjct: 163 GLLHLKAGAHIP 174


>sp|Q11034|Y1364_MYCTU Uncharacterized protein Rv1364c/MT1410 OS=Mycobacterium
           tuberculosis GN=Rv1364c PE=1 SV=1
          Length = 653

 Score = 33.1 bits (74), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 4/75 (5%)

Query: 136 RNSFSQSLKECQERRLRAEALSRRRPASLDLNNATFISSPRLGAMKKSSNLSRKTGT--- 192
           R     +     +R++  E+ S   P ++DL+  T + S  +GA+  + + +RK GT   
Sbjct: 562 RGDVDSTTAATLDRQIAVESRSGIAPVTIDLSAVTHLGSAGVGALAAACDRARKQGTECV 621

Query: 193 -FPSPGTPNYRNASV 206
               PG+P +   S+
Sbjct: 622 LVAPPGSPAHHVLSL 636


>sp|Q0CZN5|DRS1_ASPTN ATP-dependent RNA helicase drs1 OS=Aspergillus terreus (strain NIH
           2624 / FGSC A1156) GN=drs1 PE=3 SV=1
          Length = 821

 Score = 32.7 bits (73), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 30/52 (57%)

Query: 456 IVDDWRKKAADAQTSAWDITESTKTISKIKREELRITAWENLQKAKAEAAIR 507
           + D W KKAAD +    ++ E  KT  ++ + E+++T  ENL K +AE   R
Sbjct: 684 VADQWAKKAADLEEEINEVLEEEKTEKQLAQAEMQVTKGENLIKHEAEIMSR 735


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.126    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,220,330
Number of Sequences: 539616
Number of extensions: 7927030
Number of successful extensions: 19525
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 111
Number of HSP's that attempted gapping in prelim test: 19448
Number of HSP's gapped (non-prelim): 177
length of query: 532
length of database: 191,569,459
effective HSP length: 122
effective length of query: 410
effective length of database: 125,736,307
effective search space: 51551885870
effective search space used: 51551885870
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)