Query 009522
Match_columns 532
No_of_seqs 114 out of 126
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 07:05:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/009522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vov_A MOPE, surface-associate 13.5 98 0.0033 30.5 2.7 25 189-213 69-95 (336)
2 2a26_A Calcyclin-binding prote 11.0 2.5E+02 0.0084 21.5 3.7 24 489-512 26-49 (50)
3 2jxc_B Stonin-2, stoned B; end 10.7 1.2E+02 0.0042 23.0 1.8 23 278-300 1-23 (45)
4 2kfd_A PRE-mRNA-processing pro 8.7 91 0.0031 25.7 0.6 17 237-253 28-44 (69)
5 3ljm_A Coil Ser L9C; de novo d 8.6 2.9E+02 0.0098 19.4 2.9 6 494-499 3-8 (31)
6 2odv_A Plectin 1, HD1; plakin 8.4 3.3E+02 0.011 25.9 4.4 34 492-525 100-143 (235)
7 2qag_B Septin-6, protein NEDD5 8.2 80 0.0027 32.7 0.0 49 462-510 328-383 (427)
8 4gyx_A Type III collagen fragm 7.6 1.4E+02 0.0048 21.0 1.0 6 279-284 2-7 (31)
9 2d46_A Calcium channel, voltag 7.3 2.1E+02 0.0073 23.0 2.1 18 485-502 42-59 (61)
10 1r5s_A GAP junction alpha-1 pr 6.8 2.3E+02 0.0078 25.8 2.3 15 278-292 1-22 (132)
No 1
>2vov_A MOPE, surface-associated protein; metal-binding protein, oxidized tryptophan, methanotroph bacterium, kunurenine, copper binding; HET: KYN; 1.35A {Methylococcus capsulatus} PDB: 2vox_A* 2vow_A
Probab=13.47 E-value=98 Score=30.48 Aligned_cols=25 Identities=40% Similarity=0.678 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCc--CCccccccCCC
Q 009522 189 KTGTFPSPGTPNYR--NASVGMHKGWS 213 (532)
Q Consensus 189 ~~G~FpSPGtPnY~--~~~~g~qKGWS 213 (532)
+.-+-|-||||-|. ..-.||+|-+|
T Consensus 69 kiasppgpgtpiygpprdfsgynksys 95 (336)
T 2vov_A 69 KIASPPGPGTPIYGPPRDFSGYNKSYS 95 (336)
T ss_dssp SBCCCSSSSCCCBCSCCBCTTSCEEEE
T ss_pred EecCCCCCCCcCcCCCcccccccccee
Confidence 45667999999995 23467777654
No 2
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=11.02 E-value=2.5e+02 Score=21.48 Aligned_cols=24 Identities=21% Similarity=0.155 Sum_probs=20.7
Q ss_pred HhHHHHHHhHHHHHHHHHHhHHHH
Q 009522 489 LRITAWENLQKAKAEAAIRKLEVL 512 (532)
Q Consensus 489 aKI~AWEnlQKAKAEA~mrKlEm~ 512 (532)
..++.+-+.+++++|.+|.++|++
T Consensus 26 ~rVk~~L~~ei~~lE~ei~~~~~~ 49 (50)
T 2a26_A 26 KRVRDALTAEKSKIETEIKNKMQQ 49 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 367888999999999999999875
No 3
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal rearrangement, cytoplasm, membrane, phosphorylation, polymorphism, proto-oncogene; NMR {Homo sapiens}
Probab=10.66 E-value=1.2e+02 Score=23.01 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=12.5
Q ss_pred CCCCCCCCCccccCCCCcccccC
Q 009522 278 GPLGPPGLAYYSLYSPAMPMFDG 300 (532)
Q Consensus 278 GPLgPPG~~~Ys~~Spsv~l~dg 300 (532)
||||+|.+.--..|+..-|++|-
T Consensus 1 gpl~~p~~~e~~Pw~atNPFLde 23 (45)
T 2jxc_B 1 GPLGSPSVTEASPWRATNPFLNE 23 (45)
T ss_dssp -----CCCSCCCCSCSSCSSSST
T ss_pred CCCCCCccccCCCcccCCcchhh
Confidence 89999998666667766677654
No 4
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=8.73 E-value=91 Score=25.71 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=14.0
Q ss_pred CCCCCCCccccccceee
Q 009522 237 NGRTLPSKWEDAERWIL 253 (532)
Q Consensus 237 nGRtLPSKWEDAERWI~ 253 (532)
.|.+.|+-||||-.=|+
T Consensus 28 ~~k~kPe~WE~A~~~I~ 44 (69)
T 2kfd_A 28 TGKPKPSTWDLASKELG 44 (69)
T ss_dssp SSSCCCSSHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHc
Confidence 46999999999976665
No 5
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=8.59 E-value=2.9e+02 Score=19.41 Aligned_cols=6 Identities=67% Similarity=1.464 Sum_probs=3.0
Q ss_pred HHHhHH
Q 009522 494 WENLQK 499 (532)
Q Consensus 494 WEnlQK 499 (532)
||.++|
T Consensus 3 wealek 8 (31)
T 3ljm_A 3 WEALEK 8 (31)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 6
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=8.44 E-value=3.3e+02 Score=25.90 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=25.6
Q ss_pred HHHHHhHHHHHH------HHHHhHHHHh----hHHHHHHHhhcc
Q 009522 492 TAWENLQKAKAE------AAIRKLEVLH----SFFCLLFVCYSW 525 (532)
Q Consensus 492 ~AWEnlQKAKAE------A~mrKlEm~~----~f~~~~~~~~~~ 525 (532)
.+|++|++|-.| .+|+++|.+. .|+.-...|-.|
T Consensus 100 ~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka~~~e~~ 143 (235)
T 2odv_A 100 KEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQ 143 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999998764 5778877665 788777777666
No 7
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=8.15 E-value=80 Score=32.74 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=0.0
Q ss_pred hhhhhhcccccccccccchhhhhhhhHHhHHHHHH-------hHHHHHHHHHHhHH
Q 009522 462 KKAADAQTSAWDITESTKTISKIKREELRITAWEN-------LQKAKAEAAIRKLE 510 (532)
Q Consensus 462 k~~~esrAaAWEeaEkaK~~~R~qREEaKI~AWEn-------lQKAKAEA~mrKlE 510 (532)
+...+.+...=|+.-+..+..|.+.+|.+++.||. .+|.+.+.++++||
T Consensus 328 ~~~~~~~~~~~e~~~~~~f~~~v~~~e~~l~~~e~~l~~~~~~~~~~~~~~~~~le 383 (427)
T 2qag_B 328 RNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLE 383 (427)
T ss_dssp --------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666777788889999999996 23334445555554
No 8
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=7.57 E-value=1.4e+02 Score=20.96 Aligned_cols=6 Identities=83% Similarity=1.868 Sum_probs=2.5
Q ss_pred CCCCCC
Q 009522 279 PLGPPG 284 (532)
Q Consensus 279 PLgPPG 284 (532)
|.||||
T Consensus 2 ppgppg 7 (31)
T 4gyx_A 2 PPGPPG 7 (31)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 344443
No 9
>2d46_A Calcium channel, voltage-dependent, beta 4 subunit isoform A; Ca2+ channel, BETA4A subunit, nuclear magnetic resonance, alternative spliving; NMR {Homo sapiens}
Probab=7.32 E-value=2.1e+02 Score=23.05 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=15.5
Q ss_pred hhhHHhHHHHHHhHHHHH
Q 009522 485 KREELRITAWENLQKAKA 502 (532)
Q Consensus 485 qREEaKI~AWEnlQKAKA 502 (532)
-|+|+.=||+.-|+|||.
T Consensus 42 ~RrE~ErqA~~QLekAk~ 59 (61)
T 2d46_A 42 IRQEREQQAAIQLERAKS 59 (61)
T ss_dssp THHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 577888999999999984
No 10
>1r5s_A GAP junction alpha-1 protein; CX43CT, membrane protein; NMR {Rattus norvegicus} SCOP: f.50.1.1
Probab=6.81 E-value=2.3e+02 Score=25.82 Aligned_cols=15 Identities=53% Similarity=0.990 Sum_probs=10.8
Q ss_pred CCCCCCCC-------CccccCC
Q 009522 278 GPLGPPGL-------AYYSLYS 292 (532)
Q Consensus 278 GPLgPPG~-------~~Ys~~S 292 (532)
||||-||. +||--+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~ 22 (132)
T 1r5s_A 1 GPLGSPSKDCGSPKYAYFNGCS 22 (132)
T ss_dssp CCCSCTTTTSSCSSSCCCCCCC
T ss_pred CCCCCCccccCCcceeeecccC
Confidence 89999882 6776554
Done!