BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009524
         (532 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 106/291 (36%), Gaps = 70/291 (24%)

Query: 63  LVYLAREKRPQYSHNFKAGAMNALIRVSSKISNGQVTLNVDCDMYSNNSQAVRDALCFFM 122
           +VY  RE+    + + KAG M+A +    +   G++ +  D D   +     R    F  
Sbjct: 214 VVYSTRER----NEHAKAGNMSAAL----ERLKGELVVVFDADHVPSRDFLARTVGYFVE 265

Query: 123 DEEKGHEFAFVQFPQ---NFDNVTKNELYSNSLRIYNEVEF----EGMDGYGGPIYCGSG 175
           D +       VQ P    N D + +N    +     NE+ +     G+D +GG  +CGS 
Sbjct: 266 DPD----LFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSA 321

Query: 176 CFHRREILCGRKYDKETKIELKRENDXXXXXXXXXXXXXXXXXXXCTYETNTQWGKEIGL 235
              RR  L                                        E     G+ I  
Sbjct: 322 AVLRRRALD---------------------------------------EAGGFAGETI-- 340

Query: 236 KYGCPVEDVITGISIQCQGWKSVYCKPERDAFLGVSPTTLLQFLVQRKRWSEGDFQIMLC 295
                 ED  T + I  +GWKS+Y   +R    G+ P T   F+ QR RW+ G  Q++L 
Sbjct: 341 -----TEDAETALEIHSRGWKSLYI--DRAMIAGLQPETFASFIQQRGRWATGMMQMLLL 393

Query: 296 RYSPARYAHGKISXXXXXXXXXXXXWAPNCLATLFYSIVPSLYLLKGIPLF 346
           +    R   G I+            + P  L  + + + P +YL  GI +F
Sbjct: 394 KNPLFRRGLG-IAQRLCYLNSMSFWFFP--LVRMMFLVAPLIYLFFGIEIF 441


>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
           EUKARYOTIC Rad54
          Length = 644

 Score = 30.8 bits (68), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 7/55 (12%)

Query: 230 GKEIGLKYGCPVEDVI-TGISIQCQG--W----KSVYCKPERDAFLGVSPTTLLQ 277
           G+ I   YGC + D +  G ++QC    W    +S  CKPE D  + VSP++L++
Sbjct: 73  GRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVR 127


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.138    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,746,352
Number of Sequences: 62578
Number of extensions: 582294
Number of successful extensions: 987
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 979
Number of HSP's gapped (non-prelim): 11
length of query: 532
length of database: 14,973,337
effective HSP length: 103
effective length of query: 429
effective length of database: 8,527,803
effective search space: 3658427487
effective search space used: 3658427487
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)