BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 009525
(532 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MA15|Y1796_ARATH Uncharacterized aarF domain-containing protein kinase At1g79600,
chloroplastic OS=Arabidopsis thaliana GN=At1g79600 PE=1
SV=1
Length = 711
Score = 866 bits (2238), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/515 (82%), Positives = 468/515 (90%), Gaps = 6/515 (1%)
Query: 18 SRRRAKAIAKAALVEARPRAVPALRKSSGSGSVQKVLV---GDRADDLQAEARAMARAVN 74
+RRR +A+AALV+ARP+ A S S V+ D ADDLQAEARA+ RA++
Sbjct: 36 NRRR---LARAALVQARPKEDGAAASPSPSSRPASVVQYRRADLADDLQAEARALGRAID 92
Query: 75 ASVYSPELLARNYGSRPVQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRR 134
AS+YSPEL+AR +GS+P + LRR+L+IL ALG F+LKL IDQ+ G L++N +KRA ELRR
Sbjct: 93 ASIYSPELIARKHGSQPFKALRRSLEILGALGGFALKLGIDQKQGNLEKNMKKRAIELRR 152
Query: 135 IFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDS 194
IFTRLGPTFVKLGQGLSTRPD+CPP+YLEEL+ELQDALPTFPDAEAF+CIEREL L+L++
Sbjct: 153 IFTRLGPTFVKLGQGLSTRPDLCPPDYLEELAELQDALPTFPDAEAFACIERELDLSLET 212
Query: 195 IFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKY 254
IFSS+SP PIAAASLGQVYKAQL+YSGQ+VAVKVQRPGIEEAIGLDFYLIRGVG LINKY
Sbjct: 213 IFSSVSPEPIAAASLGQVYKAQLRYSGQVVAVKVQRPGIEEAIGLDFYLIRGVGKLINKY 272
Query: 255 VDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVL 314
VD ITTDV+ LIDEFA RVYQELNYVQE QNARRFKKLYADK DVLVPDIFWDYTS KVL
Sbjct: 273 VDFITTDVLTLIDEFACRVYQELNYVQEAQNARRFKKLYADKADVLVPDIFWDYTSRKVL 332
Query: 315 TMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGK 374
TMEWVEG KLNEQ+AIESQGLKVLDLVNTGIQCSLRQLLEYG+FHADPHPGNLLATP+GK
Sbjct: 333 TMEWVEGTKLNEQLAIESQGLKVLDLVNTGIQCSLRQLLEYGFFHADPHPGNLLATPDGK 392
Query: 375 LAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRN 434
LAFLDFGMMSETPEEARFAIIGHVVH+VNRDYEAMARDYYAL FLSPDVDVTPI+PALR+
Sbjct: 393 LAFLDFGMMSETPEEARFAIIGHVVHLVNRDYEAMARDYYALKFLSPDVDVTPIIPALRD 452
Query: 435 FFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKV 494
FFDDALN +VSELNFKT+VDGLGAV YQYPFNVP YYALILRSLTVLEGLALYADPNFKV
Sbjct: 453 FFDDALNYTVSELNFKTLVDGLGAVFYQYPFNVPPYYALILRSLTVLEGLALYADPNFKV 512
Query: 495 LAASYPYFAKRLLTDPNPYLRDALVELLFKDGRFR 529
LAASYPYFAKRLLTDPNPYLRDAL+ELLFKDG+FR
Sbjct: 513 LAASYPYFAKRLLTDPNPYLRDALIELLFKDGKFR 547
>sp|Q55680|Y005_SYNY3 Uncharacterized protein sll0005 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0005 PE=3 SV=1
Length = 681
Score = 501 bits (1291), Expect = e-141, Method: Compositional matrix adjust.
Identities = 239/452 (52%), Positives = 323/452 (71%), Gaps = 1/452 (0%)
Query: 78 YSPELLARNYGSRPVQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFT 137
Y P+L+ Y RP+Q+L R + IL L F L + ++ G R +A +LR + T
Sbjct: 53 YHPDLIMEFYRKRPLQVLGRLINILFPLLRFILGIWWEKLRGKDPTVSRAKAIQLRELLT 112
Query: 138 RLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFS 197
LGPT++K+GQ LSTRPD+ PP +L+EL+ LQD LP+FP+ A+ IE ELG + I++
Sbjct: 113 NLGPTYIKVGQALSTRPDLVPPVFLDELTTLQDQLPSFPNEVAYRFIEEELGAPAEEIYA 172
Query: 198 SISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKYVDI 257
+SP PIAAASLGQVYK +LK +G+ VAVKVQRP + I LD Y++R + + V
Sbjct: 173 ELSPEPIAAASLGQVYKGKLK-TGEAVAVKVQRPDLVRRITLDIYIMRSLSLWARRSVKR 231
Query: 258 ITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTME 317
+ +D+VA+ DE ASRV++E+NY QE N +F +LY ++ VP I+W YT +VLTME
Sbjct: 232 LRSDLVAITDELASRVFEEMNYYQEAINGEKFAQLYGSLPEIYVPSIYWQYTGRRVLTME 291
Query: 318 WVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAF 377
WVEG+KL AI++QG+ LV G+QCSLRQLLE+G+FHADPHPGNLLA +G+LA+
Sbjct: 292 WVEGIKLTNIKAIQAQGIDATHLVEVGVQCSLRQLLEHGFFHADPHPGNLLAMADGRLAY 351
Query: 378 LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFD 437
LDFGMMS R+ +I VVH+VNRD++++A+DY LDFL PD D+ PI+PAL F
Sbjct: 352 LDFGMMSTIQPYQRYGLIEAVVHLVNRDFDSLAKDYVKLDFLKPDTDLKPIIPALGQVFG 411
Query: 438 DALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAA 497
+AL +SV+ELNFK+I D + A++Y++PF VPAYYALI+RS+ LEG+A+ DPNFKVL+
Sbjct: 412 NALGASVAELNFKSITDQMSAMMYEFPFRVPAYYALIIRSMVTLEGIAIGIDPNFKVLSK 471
Query: 498 SYPYFAKRLLTDPNPYLRDALVELLFKDGRFR 529
+YPY AKRLLTD + LR +L ELLFK+G FR
Sbjct: 472 AYPYIAKRLLTDQSEELRTSLKELLFKEGSFR 503
>sp|P73121|Y1919_SYNY3 Uncharacterized protein slr1919 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1919 PE=3 SV=1
Length = 566
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/457 (45%), Positives = 310/457 (67%), Gaps = 2/457 (0%)
Query: 74 NASVYSPELLARNYGSRPVQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELR 133
N Y+ + +A Y RP ++L R L+++ + G F LL DQ G ++ KR+RA +LR
Sbjct: 15 NIRRYNAQAIANYYRRRPWKVLWRALEVVWSFGFFLTCLLWDQWTGQVEYYKRQRAEDLR 74
Query: 134 RIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLD 193
+ T+LGPTF+K+GQ LSTRPD+ ++LEEL +LQD LP F + AF +E +LG+ +D
Sbjct: 75 ELLTKLGPTFIKVGQALSTRPDLVRRDFLEELIKLQDQLPPFDNDLAFQLMEEQLGMKVD 134
Query: 194 SIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINK 253
+ IS P+AAASLGQVY+A L +SG+ VAVKVQRP + + LD YL+R +
Sbjct: 135 EAYREISAHPVAAASLGQVYRAML-FSGEEVAVKVQRPNLRPRLSLDLYLMRLGAQKFGR 193
Query: 254 YVDI-ITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGK 312
++ + + D+ ++DEF ++++E++Y+ EG+NA +F + + +V VP I+W Y++ K
Sbjct: 194 FLPLNLGHDLTLIVDEFGIKLFEEIDYLNEGRNAEKFAENFHGDAEVKVPCIYWQYSNQK 253
Query: 313 VLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPE 372
VLT+EW++G KL + I + GL D++ G+ LRQLLE+G+FHADPHPGNL AT +
Sbjct: 254 VLTLEWIQGFKLTDTDKIRAAGLDPSDIIRIGVTSGLRQLLEHGFFHADPHPGNLFATLD 313
Query: 373 GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPAL 432
G++A++DFGMM + + I +V ++N+DY A+ D+ AL FL+P+ D+TPI+PAL
Sbjct: 314 GRMAYIDFGMMDQLEPGTKETIASSIVQLINKDYLALTEDFIALGFLAPNTDITPIIPAL 373
Query: 433 RNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNF 492
N F A+ SV + NFKTI D ++Y YPF VPA +ALI+RSL EGLAL DPNF
Sbjct: 374 ENVFGSAIGQSVQDFNFKTITDDFSELMYDYPFRVPAKFALIIRSLVTQEGLALSLDPNF 433
Query: 493 KVLAASYPYFAKRLLTDPNPYLRDALVELLFKDGRFR 529
K++ +YPY A+RLLT +P LR L+++LFK+G+F+
Sbjct: 434 KIVEVAYPYVARRLLTGESPQLRRQLIDVLFKNGKFQ 470
>sp|Q94BU1|Y1181_ARATH Uncharacterized aarF domain-containing protein kinase At1g71810,
chloroplastic OS=Arabidopsis thaliana GN=At1g71810 PE=1
SV=1
Length = 692
Score = 412 bits (1058), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/443 (45%), Positives = 298/443 (67%), Gaps = 9/443 (2%)
Query: 87 YGSRPVQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKL 146
Y +P+ LLRR QI + L D+ DQ + RAAELR++ LGP +VK+
Sbjct: 78 YKKKPLILLRRLAQIGTTFSYWFGLRLADEALERSDQMFKVRAAELRKLLVELGPAYVKI 137
Query: 147 GQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAA 206
Q +S+RPD+ PP YL+ELS LQD + F AF+ IE ELGL +D +FS ISP P+AA
Sbjct: 138 AQAVSSRPDLIPPIYLDELSLLQDQITPFSTEVAFNMIEDELGLPIDELFSEISPEPVAA 197
Query: 207 ASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKYVDIITTDVVALI 266
ASLGQVY+A+L+ SG++VAVKVQRPG+ AI LD ++R + LI K +D+ A++
Sbjct: 198 ASLGQVYQARLRRSGKVVAVKVQRPGVRAAIALDTLILRYIAGLIKK-AGRFNSDLEAVV 256
Query: 267 DEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNE 326
DE+A+ +++E++Y+ E QN +F+KLY +DVLVP ++ +Y++ KVL MEWVEG KLNE
Sbjct: 257 DEWATSLFKEMDYLNEAQNGIKFRKLYGGIKDVLVPKMYTEYSTSKVLVMEWVEGQKLNE 316
Query: 327 QVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFGMMSET 386
+ L LV G+ CS QLLEYG++HADPHPGN L T +G+LA+LDFGMM +
Sbjct: 317 --------VNDLYLVEVGVYCSFNQLLEYGFYHADPHPGNFLRTYDGQLAYLDFGMMGDF 368
Query: 387 PEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSE 446
E R + +H+VNRD++A+A+D+ L L P + + + AL + F DA++ V
Sbjct: 369 RPELRDGFMEACLHLVNRDFKALAKDFVTLGLLPPTAEKSAVTKALTDVFQDAISRGVRN 428
Query: 447 LNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRL 506
++F ++ LG +Y++ F +P Y++L++RSL VLEG+A+ PN+KVL ++YP+ A+++
Sbjct: 429 ISFGDLLGDLGKTMYRFKFRIPPYFSLVIRSLAVLEGIAIGISPNYKVLGSTYPWIARKI 488
Query: 507 LTDPNPYLRDALVELLFKDGRFR 529
LTD +P L+ +L LL+++G FR
Sbjct: 489 LTDSSPQLKSSLQNLLYEEGVFR 511
>sp|Q8RWG1|Y4139_ARATH Uncharacterized aarF domain-containing protein kinase At4g31390,
chloroplastic OS=Arabidopsis thaliana GN=At4g31390 PE=1
SV=1
Length = 682
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/508 (38%), Positives = 301/508 (59%), Gaps = 4/508 (0%)
Query: 26 AKAALVEARPRAVPALRKSSGSGSVQKVLVGDRADDLQAEARAMARAVNASVYSPELL-A 84
A A V R ++ ++ SG + V VG + L+ V YSPE + +
Sbjct: 61 AAATDVGGRNSTDASVMTTAMSGVERGVRVGKSSSALEQLDIERGVCVPFRKYSPETVRS 120
Query: 85 RNYGSRP--VQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPT 142
+ SR V L+ R ++I+ LG + L D G ++ RA +LR + LGP+
Sbjct: 121 KVLESRGAVVSLVSRGVEIVWTLGLYWSTLTYDFLVGRDEEVVPFRARQLRNLLCNLGPS 180
Query: 143 FVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSSISPS 202
F+K GQ L+ RPDI +Y+ EL LQD +P FP+ AF+ IE ELG L++IFS IS
Sbjct: 181 FIKAGQVLANRPDIIREDYMNELCILQDDVPPFPNEVAFNIIEEELGQPLENIFSKISSQ 240
Query: 203 PIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKY-VDIITTD 261
IAAASLGQVY+A L+ +G+ VA+KVQRP IE I D +L R + +N + + + +
Sbjct: 241 TIAAASLGQVYRATLRATGEDVAIKVQRPQIEPIIYRDLFLFRTLASFLNGFSLQKLGCN 300
Query: 262 VVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEG 321
++DEF ++ +EL+Y E +N F + + D V +P ++ + +VL MEW++G
Sbjct: 301 AELIVDEFGEKLLEELDYTLEARNIEDFLENFKDDPTVKIPGVYKNLCGPRVLVMEWIDG 360
Query: 322 VKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFG 381
++ + AI+ G+ + + G+ +LRQLLE+G FH DPHPGN+ A +G++A++DFG
Sbjct: 361 IRCTDPQAIKDAGIDLNGFLTVGVSAALRQLLEFGLFHGDPHPGNIFAMQDGRIAYVDFG 420
Query: 382 MMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALN 441
++ ++ + +I VVH VN DY MA D+ L FL+ D DV+PIVPAL + ++
Sbjct: 421 NVAVLSQQNKQILIDAVVHAVNEDYGEMANDFTRLGFLAKDTDVSPIVPALEAIWQNSAG 480
Query: 442 SSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPY 501
+++ NF+++ ++Y +P +P ++L++RSL EG+ P+FK L +YPY
Sbjct: 481 KGLADFNFRSVTGQFNKLVYDFPIRIPERFSLVIRSLLTQEGICFTLKPDFKFLEVAYPY 540
Query: 502 FAKRLLTDPNPYLRDALVELLFKDGRFR 529
AKRLLTDPNP LR+ L+++LFKDG F+
Sbjct: 541 VAKRLLTDPNPALRERLIQVLFKDGVFQ 568
>sp|P73627|Y1770_SYNY3 Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1770 PE=3 SV=1
Length = 585
Score = 272 bits (696), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 143/395 (36%), Positives = 236/395 (59%), Gaps = 4/395 (1%)
Query: 121 LDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEA 180
L Q +R++A +R LGPTF+K+GQ STR D+ P EY+EELS+LQD +P F +A
Sbjct: 77 LQQRRRRQAKWIRENLLSLGPTFIKVGQLFSTRSDLFPAEYVEELSKLQDEVPAFSYEQA 136
Query: 181 FSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLD 240
IE ELG + ++ S P P+AAASLGQV+KAQL ++G+ V VKVQRPG+++ +D
Sbjct: 137 AGIIEEELGKPIAKLYRSFDPVPLAAASLGQVHKAQL-HTGEDVVVKVQRPGLKKLFTID 195
Query: 241 FYLIRGVG-FLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 299
+++ + + N D + +E ++QE +Y++EG++A F++ + ++ V
Sbjct: 196 LAILKKIAQYFQNHPKWGRGRDWNGIYEECCKILWQETDYLREGRSADTFRRNFRGEDWV 255
Query: 300 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 359
VP ++W YTS ++LT+E++ G+K++ A+E+ GL+ +L G + L QLL +G+FH
Sbjct: 256 KVPRVYWRYTSTQILTLEYLPGIKISHYDALEAAGLERKELAQLGARAYLFQLLNHGFFH 315
Query: 360 ADPHPGNLLATPE-GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDF 418
ADPHPGNL +PE G+L F DFGMM E + + ++ + + ++ E + AL
Sbjct: 316 ADPHPGNLAVSPEAGELIFYDFGMMGEITPDTKNKLMDTLFGVAEKNAERIVNSLVALGA 375
Query: 419 LSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSL 478
L D+ PI +++ D+ ++ E + I D L + Y PF PA + ++R+
Sbjct: 376 LKETEDMGPIRRSVQFLLDNFMDKPFEEQSITKISDDLYEIAYDQPFRFPATFTFVMRAF 435
Query: 479 TVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPY 513
+ LEG+ DP+F +A + P FA +++ + N +
Sbjct: 436 STLEGVGKGLDPDFNFMAVAQP-FALQIMNNSNGF 469
>sp|Q55884|Y095_SYNY3 Uncharacterized protein sll0095 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0095 PE=3 SV=1
Length = 567
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 141/403 (34%), Positives = 235/403 (58%), Gaps = 6/403 (1%)
Query: 123 QNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFS 182
Q + +RA L + LGPTF+K+GQ LSTR DI P EY+E ++LQD +P F +A +
Sbjct: 52 QRRYRRAQWLVQQLLYLGPTFIKIGQSLSTRADIIPAEYIEAFTQLQDRVPPFDSRQAIA 111
Query: 183 CIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFY 242
IE+EL +D IF +P+A+ASLGQV++A L +G+ V VKVQRPG++ + LDF
Sbjct: 112 VIEQELHGAIDEIFQQFEVTPLASASLGQVHRAVLP-TGEAVVVKVQRPGLDSLLNLDFE 170
Query: 243 LIRGVGFLINKYVDIITT-----DVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 297
L+ L +++ ++ A+ EF S ++ E++Y+ EG+NA RF++ +AD
Sbjct: 171 LLHQTLRLAKRWLPGFRRLAQKYEIEAIYQEFFSLLFLEIDYIHEGKNAERFRQNFADYP 230
Query: 298 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 357
V VP+I+W YT+ VLT+E++ G+K++++ A+E+ G+ + ++ TGI L+QLL G+
Sbjct: 231 RVRVPEIYWQYTTRMVLTLEYLPGIKVDDRQALETAGINLDLVIQTGICAYLKQLLVDGF 290
Query: 358 FHADPHPGNLLATPEGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALD 417
F +DPHPGN+ +G L F DFG M+E A+ ++ ++ +D + +
Sbjct: 291 FQSDPHPGNMAVDSQGDLIFYDFGTMAEVKIIAKDQMVQTFFAVLRKDTNQVLEALIYMG 350
Query: 418 FLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRS 477
+ P D++PI + D+ + + F + + + A+ Q PF +P IL+S
Sbjct: 351 LVEPKGDLSPIKRIINFLLDNFRDKPIDIKAFDQVGEEVYAMFQQQPFRLPPQMTFILKS 410
Query: 478 LTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALVE 520
++ L+G+A DP + ++AAS P+ + P L AL++
Sbjct: 411 ISTLDGIARALDPRYNLIAASQPFIQSITVAQPKRSLAMALLQ 453
>sp|Q9K0N0|UBIB_NEIMB Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=ubiB PE=3 SV=1
Length = 503
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 113/379 (29%), Positives = 206/379 (54%), Gaps = 2/379 (0%)
Query: 129 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 188
A LR LGP F+K GQ LSTRPD+ P +Y EL++LQD +P F + IE+ L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 189 GLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIR-GV 247
G +++ +++ PIA+AS+ QV+KA+L +SG+ VAVKV RP + I D L+R G
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGEQVAVKVLRPNLLPVIEQDLSLMRFGA 169
Query: 248 GFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWD 307
G++ + D ++ EF ++ EL+ ++E NA + + + + + ++VP +F+D
Sbjct: 170 GWVERLFADGKRLKPREVVAEFDKYLHDELDLMREAANASQLGRNFQNSDMLIVPKVFYD 229
Query: 308 YTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNL 367
Y + VLT+EW++G +++ +++ G+ + L + G++ Q+ G+FHAD HPGN+
Sbjct: 230 YCTSDVLTIEWMDGTPVSDIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNI 289
Query: 368 LATPEGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTP 427
L + + LDFG++ + + + + + NRDY +A + ++ D
Sbjct: 290 LVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEE 349
Query: 428 IVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALY 487
+ A+R + N +S+++F ++ L V ++ + L+ ++L +EGL
Sbjct: 350 LEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 409
Query: 488 ADPNFKVLAASYPYFAKRL 506
DP+ + + P+ K +
Sbjct: 410 LDPDLDLWKTAKPFLVKWM 428
>sp|Q7NZD1|UBIB_CHRVO Probable ubiquinone biosynthesis protein UbiB OS=Chromobacterium
violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 /
NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=ubiB PE=3 SV=1
Length = 508
Score = 202 bits (515), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/373 (30%), Positives = 195/373 (52%), Gaps = 5/373 (1%)
Query: 139 LGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSS 198
LGP FVK GQ LSTR D+ PPEY +EL+ LQD +P F A +ER LG ++ +F
Sbjct: 59 LGPIFVKFGQVLSTRRDLLPPEYADELALLQDRVPPFDGDIARQVVERSLGRKVEELFVD 118
Query: 199 ISPSPIAAASLGQVYKAQLKY----SGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINK- 253
P+A+AS+ QV+KA L+ G+ VAVKV RPGI I D L+R + + K
Sbjct: 119 FDLKPVASASVAQVHKAWLRQPDGGRGREVAVKVLRPGILPVIEQDLSLMRTLAGWVEKL 178
Query: 254 YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKV 313
+ D ++ EF ++ EL+ + E NA + ++ + + ++VP++F+DY+S +V
Sbjct: 179 FADGKRLKPREVVAEFDKYLHDELDMMHEAANASQLRRNFKGSDMLIVPEVFYDYSSREV 238
Query: 314 LTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEG 373
LT+EW+ G+ + + + G+ + L G++ Q+ +G+FHAD HPGN+ +G
Sbjct: 239 LTLEWMHGIPVGQIERLREAGVDLQKLSRFGVEIFFTQVFRHGFFHADMHPGNIFVAADG 298
Query: 374 KLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALR 433
+ LDFG++ + + + + + NRDY +A + ++ D + A+R
Sbjct: 299 RYIALDFGIVGSLTDTDKHYLAVNFLAFFNRDYHRVATAHIESGWVPRDTRAEELEAAVR 358
Query: 434 NFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFK 493
+ +SE++F ++ L ++ + L+ ++L +EGL DP
Sbjct: 359 TVCEPIFEKPLSEISFGMVLLRLFETSRRFNVEIQPQLVLLQKTLLNIEGLGRQLDPELD 418
Query: 494 VLAASYPYFAKRL 506
+ + P+ K +
Sbjct: 419 LWDTAKPFLTKWM 431
>sp|Q9JVQ5|UBIB_NEIMA Probable ubiquinone biosynthesis protein UbiB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=ubiB PE=3 SV=1
Length = 503
Score = 202 bits (514), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 112/379 (29%), Positives = 204/379 (53%), Gaps = 2/379 (0%)
Query: 129 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 188
A LR LGP F+K GQ LSTRPD+ P +Y EL++LQD +P F + IE+ L
Sbjct: 51 AVRLRLALESLGPIFIKFGQVLSTRPDLIPHDYAVELAKLQDKVPPFDARLSREQIEKSL 110
Query: 189 GLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIR-GV 247
G +++ +++ PIA+AS+ QV+KA+L +SG+ VAVKV RP + I D L+R G
Sbjct: 111 GQSIEKLYAEFETEPIASASIAQVHKARL-HSGERVAVKVLRPNLLPLIEQDLSLMRFGA 169
Query: 248 GFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWD 307
++ + D + ++ EF ++ EL+ ++E NA + + + + ++VP +F+D
Sbjct: 170 AWVERLFSDGRRLKPLEVVAEFDKYLHDELDLMREAANAGQLGRNFHNSNMLIVPKVFYD 229
Query: 308 YTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNL 367
Y + VLT+EW++G + + +++ G+ + L + G++ Q+ G+FHAD HPGN+
Sbjct: 230 YCTSDVLTIEWMDGTPVADIAKLKADGIDLHKLADYGVEIFFTQVFRDGFFHADMHPGNI 289
Query: 368 LATPEGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTP 427
L + + LDFG++ + + + + + NRDY +A + ++ D
Sbjct: 290 LVAADNRYIALDFGIVGTLTDYDKRYLAINFLAFFNRDYRRVATAHIESGWVPADTRAEE 349
Query: 428 IVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALY 487
+ A+R + N +S+++F ++ L V ++ + L+ ++L +EGL
Sbjct: 350 LEAAVRAVCEPVFNKPISQISFGLVLMRLFEVSRRFNVEIQPQLVLLQKTLLNIEGLGRQ 409
Query: 488 ADPNFKVLAASYPYFAKRL 506
DP+ + + P+ K +
Sbjct: 410 LDPDLDLWKTAKPFLVKWM 428
>sp|A0KEF8|UBIB_AERHH Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
9240) GN=ubiB PE=3 SV=1
Length = 546
Score = 199 bits (507), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 127/437 (29%), Positives = 218/437 (49%), Gaps = 22/437 (5%)
Query: 81 ELLARNYGSRPVQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLG 140
EL+ Y P +L RR+L F LK ++R G+ R A +R F LG
Sbjct: 23 ELVPARYQPWPGRLARRSL--------FWLK---NKRQGL------NRGARIRLAFEALG 65
Query: 141 PTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSSIS 200
P F+K GQ LSTR D+ PP+ EEL+ LQD +P F A IE LG T++++F
Sbjct: 66 PIFIKFGQMLSTRRDLLPPDIAEELALLQDRVPPFCGQAARRQIEASLGCTIETLFDDFD 125
Query: 201 PSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKYV-DIIT 259
+P+A+AS+ QV+ A+LK +G+ + +KV RP IE I D L++ + L+ ++V
Sbjct: 126 ETPLASASIAQVHTARLKENGREIVIKVIRPDIEPVIEADLRLMQALARLVARFVPQSGR 185
Query: 260 TDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWV 319
+ +++E+ + ELN ++E NA + ++ + E + VP++F ++ +VL ME +
Sbjct: 186 LRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTGSEALYVPEVFTEHCREQVLVMERI 245
Query: 320 EGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLAT---PEGKLA 376
G+ +++ A+E+ G + L G++ Q+ +FHAD HPGN+ + PE L
Sbjct: 246 YGIPVSDIAALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVSYEHPENPLW 305
Query: 377 F-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNF 435
+D G++ E + + + + NRDY +A + ++ PD V A+R
Sbjct: 306 IGIDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTKVDEFEFAIRTV 365
Query: 436 FDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVL 495
+ +SE++F ++ L ++ V L+ ++L +EGL P +
Sbjct: 366 LEPIFEKPLSEISFGHVLLNLFNTARRFNMQVQPQLVLLQKTLLYVEGLGRQLYPQLDLW 425
Query: 496 AASYPYFAKRLLTDPNP 512
+ PY + P
Sbjct: 426 QTAKPYLENWMYQQVGP 442
>sp|C4L962|UBIB_TOLAT Probable ubiquinone biosynthesis protein UbiB OS=Tolumonas auensis
(strain DSM 9187 / TA4) GN=ubiB PE=3 SV=1
Length = 543
Score = 192 bits (489), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 122/436 (27%), Positives = 214/436 (49%), Gaps = 21/436 (4%)
Query: 81 ELLARNYGSRPVQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLG 140
EL+ R++ PV+L RR+L L RN +Q+ R A LR F LG
Sbjct: 23 ELIPRHWQPWPVRLFRRSLFWL--------------RNRYPEQS---RGARLRHAFEGLG 65
Query: 141 PTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSSIS 200
P F+K GQ LSTR D+ PP+ EEL+ LQD +P+F A IE+ LG ++++F+
Sbjct: 66 PVFIKFGQMLSTRRDLLPPDLAEELAMLQDRVPSFDGQLAREQIEQALGQPIEALFADFD 125
Query: 201 PSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKYVDIITT 260
P+A+AS+ QV+ A+LK + + +KV RP I+ I D L+R ++ +
Sbjct: 126 QQPLASASVAQVHTARLKENNAEIVIKVIRPDIKPVINDDIRLMRLCAKIVAFLIPNNRL 185
Query: 261 DVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVE 320
V +I+E+ + ELN + E NA + ++ + + + VP ++ DY VL ME +
Sbjct: 186 RPVEVIEEYRRTLLDELNLMSEAANAIQLRRNFENSSHLYVPLVYSDYCRESVLVMERIY 245
Query: 321 GVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEG----KLA 376
G+ ++++ A+E+ G + L G++ Q+ +FHAD HPGN+ + E +
Sbjct: 246 GIPVSDRAALEANGTDLKLLAERGVEVFFTQVFRDSFFHADMHPGNVFVSYEHPHDPQWI 305
Query: 377 FLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFF 436
+D G++ + + + + + NRDY +A + ++ PD V ALR
Sbjct: 306 GIDCGIVGTLNRQDKRYLAENFLAFFNRDYRKVAELHVQSGWVPPDTKVEEFESALRTVL 365
Query: 437 DDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLA 496
+ ++E++F ++ L ++ +V L+ ++L +EGL + P +
Sbjct: 366 EPIFAKPLAEISFGQVLLNLFNTARRFNMHVQPQLVLLQKTLLYIEGLGRHLYPQLDLWQ 425
Query: 497 ASYPYFAKRLLTDPNP 512
+ P+ + P
Sbjct: 426 TAKPFLEHWMRQQIGP 441
>sp|Q8Y275|UBIB_RALSO Probable ubiquinone biosynthesis protein UbiB OS=Ralstonia
solanacearum (strain GMI1000) GN=ubiB PE=3 SV=1
Length = 525
Score = 192 bits (488), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 200/390 (51%), Gaps = 8/390 (2%)
Query: 123 QNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFS 182
+ R R LR +LGP FVK GQ LSTR D+ PP+ +EL++LQD +P F A +
Sbjct: 44 RQTRPRGERLRLALEQLGPIFVKFGQVLSTRRDLLPPDVADELAKLQDRVPPFDPKIAAA 103
Query: 183 CIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYS---GQIVAVKVQRPGIEEAIGL 239
+ER LG L ++F P+A+AS+ QV+ A L+ G+ VAVKV RPG+ I
Sbjct: 104 IVERSLGKPLSALFHRFDHHPVASASIAQVHFATLRGGPDDGREVAVKVLRPGMLPVIDS 163
Query: 240 DFYLIRGVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKED 298
D L+R V + K + D ++ EF ++ EL+ ++E NA + ++ +A E
Sbjct: 164 DLALMRDVATWMEKLWADGKRLKPREVVAEFDKYLHDELDLMREAANASQLRRNFAKSEL 223
Query: 299 VLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYF 358
+LVP++FWD+ + +V ME + GV+++ + + G+ L G++ Q+ G+F
Sbjct: 224 LLVPEVFWDWCTSEVFVMERMHGVRVSHADELRAAGVDTHKLARDGVEIFFTQVFRDGFF 283
Query: 359 HADPHPGNLLAT--PE--GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYY 414
HAD HPGN+L + PE G+ LDFG++ E + + + + RDY +A +
Sbjct: 284 HADMHPGNILVSVAPESLGRYIALDFGIVGALSEFDKNYLAQNFLAFFQRDYHRVALLHV 343
Query: 415 ALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALI 474
+ + V + A+R + + + E++ ++ L ++ V L+
Sbjct: 344 ESGWAPEETRVEELEGAIRACCEPYFDRPLGEISLGLVLMRLFQTSRRFNVEVQPQLVLL 403
Query: 475 LRSLTVLEGLALYADPNFKVLAASYPYFAK 504
++L +EGL DP+ + + P+ +
Sbjct: 404 QKTLLNVEGLGRQLDPDLDLWKTAKPFLER 433
>sp|Q63X97|UBIB_BURPS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain K96243) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 129 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 188
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 189 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 245
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 246 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 304
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 305 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 364
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 365 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 420
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 421 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 480
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 481 LEGLALYADPNFKVLAASYPYFAKRLLTD 509
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A3N5V1|UBIB_BURP6 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 668) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 129 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 188
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 189 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 245
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 246 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 304
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 305 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 364
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 365 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 420
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 421 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 480
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 481 LEGLALYADPNFKVLAASYPYFAKRLLTD 509
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|Q3JVZ2|UBIB_BURP1 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1710b) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 129 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 188
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 189 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 245
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 246 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 304
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 305 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 364
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 365 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 420
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 421 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 480
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 481 LEGLALYADPNFKVLAASYPYFAKRLLTD 509
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A3NRJ7|UBIB_BURP0 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
pseudomallei (strain 1106a) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 129 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 188
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 189 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 245
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 246 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 304
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 305 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 364
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 365 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 420
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 421 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 480
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 481 LEGLALYADPNFKVLAASYPYFAKRLLTD 509
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A1V750|UBIB_BURMS Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain SAVP1) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 129 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 188
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 189 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 245
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 246 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 304
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 305 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 364
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 365 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 420
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 421 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 480
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 481 LEGLALYADPNFKVLAASYPYFAKRLLTD 509
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|Q62MP2|UBIB_BURMA Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain ATCC 23344) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 129 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 188
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 189 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 245
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 246 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 304
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 305 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 364
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 365 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 420
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 421 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 480
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 481 LEGLALYADPNFKVLAASYPYFAKRLLTD 509
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A2S8L4|UBIB_BURM9 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10229) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 129 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 188
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 189 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 245
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 246 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 304
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 305 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 364
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 365 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 420
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 421 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 480
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 481 LEGLALYADPNFKVLAASYPYFAKRLLTD 509
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A3MNU1|UBIB_BURM7 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
mallei (strain NCTC 10247) GN=ubiB PE=3 SV=1
Length = 525
Score = 191 bits (484), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/389 (28%), Positives = 204/389 (52%), Gaps = 9/389 (2%)
Query: 129 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 188
A LRR LGP FVK GQ LSTR D+ P ++ EL++LQD +P F A A + +E+ L
Sbjct: 49 AVRLRRALESLGPIFVKFGQVLSTRRDLLPVDFANELAKLQDQVPPFDSAVAIAIVEKSL 108
Query: 189 GLTLDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIR 245
G +D +F P+A+AS+ QV+ A+LK + G+ VAVKV RP + I D L+R
Sbjct: 109 GARIDVLFDEFERVPVASASIAQVHFAKLKQGEHKGKAVAVKVLRPNMLPVIDSDLALMR 168
Query: 246 GVGFLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 304
+ + + D ++ EF ++ EL+ ++E N + ++ +A + +LVP++
Sbjct: 169 DIATWAERLWADGRRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEM 228
Query: 305 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 364
FWDY++ VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HP
Sbjct: 229 FWDYSTPAVLVMERMTGVPISQVDTLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHP 288
Query: 365 GNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 420
GN+ + + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 289 GNIQVSLDPKHFGRYIALDFGIVGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVP 348
Query: 421 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 480
PD V + A+R + + ++ +++ ++ L + ++ + L+ +++
Sbjct: 349 PDTRVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLN 408
Query: 481 LEGLALYADPNFKVLAASYPYFAKRLLTD 509
+EGL DP + + PY +R +T+
Sbjct: 409 VEGLGRSLDPELDLWKTAKPYL-ERWMTE 436
>sp|A9BP42|UBIB_DELAS Probable ubiquinone biosynthesis protein UbiB OS=Delftia
acidovorans (strain DSM 14801 / SPH-1) GN=ubiB PE=3 SV=1
Length = 521
Score = 189 bits (480), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/399 (28%), Positives = 199/399 (49%), Gaps = 16/399 (4%)
Query: 126 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 185
+ R LR LGP FVK GQ LSTR D+ PP+ EEL+ LQD +P F A IE
Sbjct: 47 KPRGQRLREALEELGPIFVKFGQVLSTRSDLMPPDVAEELARLQDRVPPFDSQIAVDTIE 106
Query: 186 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQI---VAVKVQRPGIEEAIGLDFY 242
R LD IF S P+A+AS+ QV+ A + + VAVKV RPG++ I D
Sbjct: 107 RAFRKKLDQIFVSFEREPVASASIAQVHFAVISDRNGVQRDVAVKVLRPGMKTVIDKDLA 166
Query: 243 LIRGVGFLINKYVDIITTDVVAL-----IDEFASRVYQELNYVQEGQNARRFKKLYADKE 297
L+ ++ ++V+ ++ D L + EF + ++ EL+ ++E NA + ++ +
Sbjct: 167 LMH----MMARWVERLSADGKRLKPRQVVAEFDNYLHDELDLIREASNAAQLRRNMEGLD 222
Query: 298 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 357
VL+P+++WD+ V+ M+ + GV +++ + G+ + L G+ Q+ G+
Sbjct: 223 LVLIPEVYWDFCRSDVMVMQRMTGVPISQVERLREAGVDIPKLARDGVTIFFTQVFRDGF 282
Query: 358 FHADPHPGNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDY 413
FHAD HPGN++ + E G+ LDFG++ E + + + RDY+ +A +
Sbjct: 283 FHADMHPGNIMVSLEPETFGRYISLDFGIVGTLTEYDKEYLAQNFTAFFRRDYKRVAELH 342
Query: 414 YALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYAL 473
++ P V + A+R + + ++E++ ++ L ++ + L
Sbjct: 343 IESGWVPPSTRVDELEAAIRAVCEPYFDRPLAEISLGMVLMRLFQTSRRFQVEIQPQLVL 402
Query: 474 ILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 512
+ ++L +EGL DPN + + + P+ K +L P
Sbjct: 403 LQKTLLNIEGLGRQLDPNLDLWSTAKPFLEKWMLDQMGP 441
>sp|B3PH50|UBIB_CELJU Probable ubiquinone biosynthesis protein UbiB OS=Cellvibrio
japonicus (strain Ueda107) GN=ubiB PE=3 SV=1
Length = 552
Score = 188 bits (478), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 110/395 (27%), Positives = 201/395 (50%), Gaps = 6/395 (1%)
Query: 123 QNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFS 182
Q + R LRR LGP FVK GQ LSTRPD+ P + + EL+ LQD + F E
Sbjct: 43 QPRLSRGERLRRACEDLGPIFVKFGQLLSTRPDLVPADIVLELNHLQDNVTPFSKGEFQR 102
Query: 183 CIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDF- 241
+E LG ++ +F+S + P+A+AS+ QV+ A LK G+ V +KV RPGI++ I D
Sbjct: 103 IVESSLGASVAEVFASFNIEPLASASVAQVHTAVLK-DGREVVIKVIRPGIDKVIAQDIA 161
Query: 242 YLIRGVGFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLV 301
L+R ++ N +D V +++++ + ++ EL+ +E N + ++ + + + V
Sbjct: 162 LLLRVARWVENNTLDGKRLHPVEIVEDYRTTIFDELDLQREAANGSQLRRNFLNSPLLYV 221
Query: 302 PDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHAD 361
P+++W+YT VL ME + G+ + + A+ +Q + L G++ Q+ E+ +FHAD
Sbjct: 222 PEVYWEYTRTNVLVMERIYGIPVTDLAALNAQQTDMKKLAERGVEIFFTQVFEHNFFHAD 281
Query: 362 PHPGNLLATPEGKLA----FLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALD 417
HPGN+ E A +D ++ ++ + +++ M RDY +A +
Sbjct: 282 MHPGNIFVAHEHPSAPQYIAVDMAIVGSLTRADQYYLARNLLAMFRRDYRQVAELHVESG 341
Query: 418 FLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRS 477
++ V V + A+R + + E++F ++ L ++ V L+ ++
Sbjct: 342 WVPSHVRVEELEAAVRTVCEPIFEKPLKEISFAQVLLNLFRTARRFEMEVQPQLVLLQKT 401
Query: 478 LTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 512
L +EGL P+ + A ++P+ + L +P
Sbjct: 402 LLNIEGLGRQLYPDLDLWATAHPFLERWLKNRFHP 436
>sp|A1U669|UBIB_MARAV Probable ubiquinone biosynthesis protein UbiB OS=Marinobacter
aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=ubiB
PE=3 SV=1
Length = 547
Score = 187 bits (475), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 197/385 (51%), Gaps = 6/385 (1%)
Query: 123 QNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFS 182
Q K R LR LGP FVK GQ LSTR D+ P + E L +LQD +P FP +A
Sbjct: 46 QPKLSRGDRLRLALEELGPVFVKFGQILSTRRDLLPDDMAESLKQLQDRVPPFPSEQARG 105
Query: 183 CIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFY 242
IE+ LG + +F+ SP P+A+AS+ QV+ A L +GQ V VKV RPGIE+ I D
Sbjct: 106 IIEKSLGAPVSELFAEFSPDPMASASVAQVHAATLP-NGQKVVVKVLRPGIEKVIRQDLG 164
Query: 243 LIRGVGFLINKYV-DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLV 301
L+ + L+ KY + V ++ ++ S ++ EL+ +E NA + ++ + + + +
Sbjct: 165 LMYLMAGLLEKYWSEGKRLHPVEVVADYDSTIHDELDLQREAANASQLRRNFENSPLIYI 224
Query: 302 PDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHAD 361
P I WDYT VL ME + G+ + + A+E G+ + L G++ Q+ +FHAD
Sbjct: 225 PFIDWDYTRKSVLVMERIHGIPIADVPALEKAGVNMRVLAEKGVEIFFTQVFRDSFFHAD 284
Query: 362 PHPGNL---LATP-EGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALD 417
HPGN+ ++ P + K +DFG++ + + + +++ RDY +A+ +
Sbjct: 285 MHPGNIFVDVSNPADPKYIAIDFGIVGTLAPDDQSYLARNLLAFFRRDYRQVAQLHIQSG 344
Query: 418 FLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRS 477
++ P+ V A+R + + +++F + L ++ V L+ ++
Sbjct: 345 WVPPETRVNEFEAAIRTVCEPIFERPLKDISFGHFLLRLFQTARRFNMEVQPQLVLLQKT 404
Query: 478 LTVLEGLALYADPNFKVLAASYPYF 502
L +EGL P+ + + + P+
Sbjct: 405 LLNVEGLGRQLYPDLDLWSTAQPFL 429
>sp|A4STK9|UBIB_AERS4 Probable ubiquinone biosynthesis protein UbiB OS=Aeromonas
salmonicida (strain A449) GN=ubiB PE=3 SV=1
Length = 546
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 122/437 (27%), Positives = 211/437 (48%), Gaps = 22/437 (5%)
Query: 81 ELLARNYGSRPVQLLRRTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLG 140
EL+ Y P +L RR+L F LK Q R A +R F LG
Sbjct: 23 ELVPARYQPWPGRLARRSL--------FWLKK---------KQPDLSRGARIRLAFEALG 65
Query: 141 PTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSSIS 200
P F+K GQ LSTR D+ PP+ EEL+ LQD +P F A IE LG ++++F
Sbjct: 66 PIFIKFGQMLSTRRDLLPPDIAEELAMLQDRVPPFCGQAARLKIEESLGCPVETLFDDFD 125
Query: 201 PSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKYV-DIIT 259
+P+A+AS+ QV+ +LK +G+ + +KV RP IE I D L++ + L+ ++V
Sbjct: 126 ETPLASASIAQVHTGRLKENGREIVIKVIRPDIEPVIEADLRLMQTLARLVARFVPQSAR 185
Query: 260 TDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWV 319
+ +++E+ + ELN ++E NA + ++ + + + VP++F ++ VL ME +
Sbjct: 186 LRPIEVVEEYRKTILDELNLMREAANAIQLRRNFTGSDALYVPEVFTEHCREHVLVMERI 245
Query: 320 EGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLAT---PEGKLA 376
G+ +++ A+E+ G + L G++ Q+ +FHAD HPGN+ + P+ L
Sbjct: 246 YGIPVSDIPALEANGTNMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVSYEHPDNPLW 305
Query: 377 F-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNF 435
+D G++ E + + + + NRDY +A + ++ PD V A+R
Sbjct: 306 IGIDCGIVGTLNREDKRYLAENFLAFFNRDYRRVAELHVESGWVPPDTKVDEFEFAIRTV 365
Query: 436 FDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVL 495
+ +SE++F ++ L ++ V L+ ++L +EGL P +
Sbjct: 366 LEPIFEKPLSEISFGHVLLNLFNTARRFNMAVQPQLVLLQKTLLYVEGLGRQLYPQLDLW 425
Query: 496 AASYPYFAKRLLTDPNP 512
+ PY + P
Sbjct: 426 QTAKPYLENWMHEQVGP 442
>sp|Q46189|YHG1_CLOPA Uncharacterized protein in hydrogenase 1 5'region (Fragment)
OS=Clostridium pasteurianum PE=3 SV=1
Length = 530
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 118/408 (28%), Positives = 206/408 (50%), Gaps = 12/408 (2%)
Query: 97 RTLQILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDI 156
R +I+ L + ++D + L+ NK K LR+ F LGPTF+K+GQ LSTRPD+
Sbjct: 5 RLKEIVKVLAYYGFGFIVDSK---LNGNK-KSPENLRKAFEELGPTFIKIGQILSTRPDL 60
Query: 157 CPPEYLEELSELQDALP--TFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYK 214
P Y++ELS+LQ+ +P F D E + EL T+D+ F +PI +AS+ QV+
Sbjct: 61 LPLPYIKELSKLQNNVPPENFIDIE--NLFFEELSSTIDNTFLYFDKTPIGSASIAQVHD 118
Query: 215 AQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRG-VGFLINKYVDIITTDVVALIDEFASRV 273
A LK G+ V VK+QRPGI E + D +I+ + K+ D + D IDE
Sbjct: 119 AILK-DGRFVIVKIQRPGIAEMMKTDLSIIKKLLNITKTKFTDAL-IDPKEAIDELFIST 176
Query: 274 YQELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQ 333
QEL+++ E N ++FKKL D + V P + K++ ME + G+K++ + ++
Sbjct: 177 TQELDFINEINNIKKFKKLNEDVKFVRTPYTIDKLCTEKIIVMEKIVGIKIDNLKKLLNE 236
Query: 334 GLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPEGKLAFLDFGMMSETPEEARFA 393
G + +L +Q+ + G+FH DPHPGNLL E + ++DFG+M + + +
Sbjct: 237 GYDLEELGKKLTLSYFKQVFQDGFFHGDPHPGNLLIR-ENHICYIDFGIMGTISKSLKIS 295
Query: 394 IIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIV 453
+ ++ + D M ++ V+ + ++ FD+ ++ S+ + ++
Sbjct: 296 LNDAILAVAYHDVNKMISVIMSIGVKKGYVNRNSLYESIEYLFDNYISVSLKNIKISVML 355
Query: 454 DGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPY 501
+ + +P ++L+S ++EG+ P ++ PY
Sbjct: 356 QEIFQISKNNNIKLPKELTMLLKSTLMIEGVIARISPELSIVDVLIPY 403
>sp|C5CWY2|UBIB_VARPS Probable ubiquinone biosynthesis protein UbiB OS=Variovorax
paradoxus (strain S110) GN=ubiB PE=3 SV=1
Length = 521
Score = 182 bits (462), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 199/397 (50%), Gaps = 16/397 (4%)
Query: 128 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 187
R LR RLGP FVK GQ LSTR D+ PP+ +EL+ LQD +P FP A A + IER
Sbjct: 49 RGQRLREALERLGPIFVKFGQVLSTRRDLLPPDIADELAFLQDRVPPFPSAVAIATIERA 108
Query: 188 LGLTLDSIFSSISPSPIAAASLGQVYKAQLKY-SGQI--VAVKVQRPGIEEAIGLDFYLI 244
+ +F +PIA+AS+ QV+ A ++ G++ VAVKV RP + I D L+
Sbjct: 109 FRRPVGDVFVQFDETPIASASIAQVHFATIRTDEGEVREVAVKVLRPSMRGVIEKDLALM 168
Query: 245 RGVGFLINKYVDIITTDVVAL-----IDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 299
++ +V+ ++ D L + EF ++ EL+ V+E NA + ++ A E V
Sbjct: 169 A----MMAGWVEKLSPDGKRLKPREVVGEFDKYLHDELDLVREAANAAQLRRNMASLELV 224
Query: 300 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 359
L+P++FWD+ +V+ ME + GV + + + + G+ + L G+ Q+ G+FH
Sbjct: 225 LIPEMFWDFCHPEVIVMERMNGVPIAQLDRLRAAGVDIPKLARDGVTIFFTQVFRDGFFH 284
Query: 360 ADPHPGNLLAT--PE--GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 415
AD HPGN+ + PE G+ LDFG++ E + + + V RDY+ +A +
Sbjct: 285 ADMHPGNIQVSLAPETFGRYISLDFGIIGTLTESDKEYLAQNFVAFFRRDYKRVAELHLE 344
Query: 416 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 475
++ + + A+R + + + E++ ++ L ++ + L+
Sbjct: 345 SGWVPEGTRIDELEGAIRTVCEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQ 404
Query: 476 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 512
++L +EGL DP + + P+ K ++ P
Sbjct: 405 KTLLNIEGLGRQLDPELDLWHTAKPFLEKWMVDQIGP 441
>sp|B9ME24|UBIB_ACIET Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax ebreus
(strain TPSY) GN=ubiB PE=3 SV=1
Length = 521
Score = 182 bits (462), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 199/397 (50%), Gaps = 16/397 (4%)
Query: 128 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 187
R LR LGP FVK GQ LSTR D+ PP+ +EL+ LQD +P F A + IER
Sbjct: 49 RGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERA 108
Query: 188 LGLTLDSIFSSISPSPIAAASLGQVYKAQLKY---SGQIVAVKVQRPGIEEAIGLDFYLI 244
+ +F S P+A+AS+ QV+ A ++ + VAVKV RPG+ I D L+
Sbjct: 109 FRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALM 168
Query: 245 RGVGFLINKYVDIITTDVVAL-----IDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 299
R ++ +V+ ++ D L + EF + ++ EL+ V+E NA + ++ + V
Sbjct: 169 R----MMAGWVESLSADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLV 224
Query: 300 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 359
L+P++FWD+ +VL ME ++GV +N+ + S G+ + L G+ Q+ G+FH
Sbjct: 225 LIPEVFWDFCHAEVLVMERMKGVPINQVERLRSAGVDIPKLARDGVTIFFTQVFRDGFFH 284
Query: 360 ADPHPGNLLAT--PE--GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 415
AD HPGN+ + PE G+ LDFG++ E + + + RDY+ +A +
Sbjct: 285 ADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIE 344
Query: 416 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 475
++ V + A+R + + + E++ ++ L ++ + L+
Sbjct: 345 SGWVPAHTRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQ 404
Query: 476 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 512
++L +EGL DP+ + + + P+ K +L P
Sbjct: 405 KTLLNIEGLGRQLDPDLDLWSTAKPFLEKWMLDQLGP 441
>sp|B1KR05|UBIB_SHEWM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella woodyi
(strain ATCC 51908 / MS32) GN=ubiB PE=3 SV=1
Length = 549
Score = 182 bits (461), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 112/397 (28%), Positives = 200/397 (50%), Gaps = 6/397 (1%)
Query: 122 DQNKRKRAAE-LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEA 180
+Q+K K E L+ + LGP ++K GQ LSTR D+ E+ EEL+ LQD +P F + A
Sbjct: 46 NQHKDKVGGERLKLVMQELGPVYIKFGQMLSTRRDLLDDEWAEELAMLQDRVPPFDSSIA 105
Query: 181 FSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLD 240
IE ELG ++D+ F +P+A+AS+ QV+ A LK +G+ V +KV RP +E + D
Sbjct: 106 REMIELELGTSIDTYFDDFDNTPLASASISQVHTATLKSNGKAVVLKVLRPNVEAQVDAD 165
Query: 241 FYLI-RGVGFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 299
+L+ + FL +++++ + + ELN E NA + + + D +
Sbjct: 166 LHLMSQAANFLETVLGHGNRLRPAEVVEDYRTTIEGELNLKLEALNAVKLRNNFLDSGSL 225
Query: 300 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 359
+P ++ + +++ ME +EG+ +++ A+++QG + L G++ Q+ +FH
Sbjct: 226 YIPYMYEELCFTRLIVMERIEGIPVSDMAALKAQGTNLKVLAERGVELFFTQVFRDNFFH 285
Query: 360 ADPHPGNLLAT---PEGKLAF-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 415
AD HPGN+ + PE LD G+M EE + + + + NRDY +A+ Y
Sbjct: 286 ADMHPGNIFVSREHPEDPYYIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYHRIAQLYIE 345
Query: 416 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 475
++SPD D+ A++ + N + E++F ++ L ++ V L+
Sbjct: 346 SGWVSPDTDIAAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLE 405
Query: 476 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 512
++L +EGL P + + P+ K + P
Sbjct: 406 KTLLYIEGLGRQLYPQLDLWQTAKPFLEKWMSEQVGP 442
>sp|A1W4D7|UBIB_ACISJ Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax sp.
(strain JS42) GN=ubiB PE=3 SV=1
Length = 521
Score = 181 bits (460), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 116/397 (29%), Positives = 199/397 (50%), Gaps = 16/397 (4%)
Query: 128 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 187
R LR LGP FVK GQ LSTR D+ PP+ +EL+ LQD +P F A + IER
Sbjct: 49 RGQRLREALESLGPIFVKFGQVLSTRRDLMPPDIADELALLQDRVPPFDPDVAIATIERA 108
Query: 188 LGLTLDSIFSSISPSPIAAASLGQVYKAQLKY---SGQIVAVKVQRPGIEEAIGLDFYLI 244
+ +F S P+A+AS+ QV+ A ++ + VAVKV RPG+ I D L+
Sbjct: 109 FRRPIGEVFVSFDRQPVASASIAQVHFAVIRDRQGHAREVAVKVLRPGMLPVIDKDLALM 168
Query: 245 RGVGFLINKYVDIITTDVVAL-----IDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 299
R ++ +V+ ++ D L + EF + ++ EL+ V+E NA + ++ + V
Sbjct: 169 R----MMAGWVESLSADGKRLKPREVVAEFDNYLHDELDLVREAANAAQLRRNMQGLDLV 224
Query: 300 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 359
L+P++FWD+ +VL ME ++GV +N+ + S G+ + L G+ Q+ G+FH
Sbjct: 225 LIPEVFWDFCHAEVLVMERMKGVPINQVDRLRSAGVDIPKLARDGVTIFFTQVFRDGFFH 284
Query: 360 ADPHPGNLLAT--PE--GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 415
AD HPGN+ + PE G+ LDFG++ E + + + RDY+ +A +
Sbjct: 285 ADMHPGNIQVSLAPETFGRYISLDFGIVGTLTEFDKEYLAQNFTAFFRRDYKRVAELHIE 344
Query: 416 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 475
++ V + A+R + + + E++ ++ L ++ + L+
Sbjct: 345 SGWVPAHTRVNELEAAIRTVCEPYFDRPLKEISLGMVLLRLFQTSRRFQVEIQPQLVLLQ 404
Query: 476 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 512
++L +EGL DP+ + + + P+ K +L P
Sbjct: 405 KTLLNIEGLGRQLDPDLDLWSTAKPFLEKWMLDQLGP 441
>sp|A4XPM5|UBIB_PSEMY Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas
mendocina (strain ymp) GN=ubiB PE=3 SV=1
Length = 527
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 108/386 (27%), Positives = 195/386 (50%), Gaps = 14/386 (3%)
Query: 128 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 187
R A LR LGP F+K GQ LSTR D+ PP+ +EL+ LQD +P FP+ +A + IER+
Sbjct: 55 RGARLRLALEDLGPIFIKFGQLLSTRRDLLPPDIADELARLQDQVPPFPEDQAIALIERQ 114
Query: 188 LGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGV 247
LG + +F+ P+A+AS+ QV+ AQLK SG+ V VKV RPG++ I D +
Sbjct: 115 LGAPVSQLFARFDSQPLASASVAQVHAAQLK-SGEEVVVKVVRPGLKPVIRQDLAWL--- 170
Query: 248 GFLINKYVDIITTDV-----VALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVP 302
FL+ + + + D V ++ ++ ++ EL+ ++E NA + ++ + + VP
Sbjct: 171 -FLLARIAERASADARRLRPVEVVSDYEKTIFDELDLLREAANASQLRRNFEGSPLLYVP 229
Query: 303 DIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADP 362
++WD +VL ME + GV + + + Q + L G++ Q+ +FHAD
Sbjct: 230 QVYWDLCRHQVLVMERIYGVPVTDLATLADQRTDMKLLAERGVEIFFTQVFRDSFFHADM 289
Query: 363 HPGNLLA---TPEG-KLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDF 418
HPGN+ TP + +D G++ +E + + +++ RDY +A+ + +
Sbjct: 290 HPGNIFVSTRTPWSPQYIAIDCGIIGSLTDEDQDYLARNLIAFFKRDYRKVAQLHIDSGW 349
Query: 419 LSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSL 478
+ D V A+R + + +++F ++ L ++ V L+ ++L
Sbjct: 350 VPADTKVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLVLLQKTL 409
Query: 479 TVLEGLALYADPNFKVLAASYPYFAK 504
+EGL P+ + + + P+ +
Sbjct: 410 LNIEGLGRQLYPDLDLWSTAQPFLER 435
>sp|A1SAK0|UBIB_SHEAM Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
amazonensis (strain ATCC BAA-1098 / SB2B) GN=ubiB PE=3
SV=1
Length = 549
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 113/399 (28%), Positives = 202/399 (50%), Gaps = 6/399 (1%)
Query: 120 VLDQNKRKRAAE-LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDA 178
V +++K K E L+ LGP ++K GQ LSTR D+ E+ +ELS LQD +P F A
Sbjct: 44 VRNRHKDKCGGERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAQELSMLQDRVPAFDSA 103
Query: 179 EAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIG 238
A IE EL +DS+F +P+A+AS+ QV+ A LK +GQ V +KV RP +E I
Sbjct: 104 LAREAIEAELKAPIDSLFDDFDDTPLASASISQVHTATLKSNGQQVVLKVLRPNVEANIK 163
Query: 239 LDFYLIRGVGFLINKYV-DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 297
D L+ V +N+ + + V +++++ + + ELN E NA + + + D +
Sbjct: 164 ADLELMLQVATWVNRLLGEGNRLRPVEVVEDYQNTILGELNLKLEALNATKLRNNFLDSD 223
Query: 298 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 357
+ +P ++ + +++ ME ++G+ +++ A+ +QG + L G++ Q+ +
Sbjct: 224 ALYIPYVYEELCHPRLMVMERIDGIPVSDIEALNAQGTNLKLLAERGVELFFTQVFRDNF 283
Query: 358 FHADPHPGNLLAT---PEGKLAF-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDY 413
FHAD HPGN+ + PE LD G+M EE + + + + NRDY +A+ Y
Sbjct: 284 FHADMHPGNIFISREHPENPFYIGLDCGIMGSLNEEDKRYLAENFLAFFNRDYHRIAQLY 343
Query: 414 YALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYAL 473
++S D D+ A++ + N ++E++F ++ L ++ V L
Sbjct: 344 VESGWVSADTDILAFEQAVKLVCEPMFNKPLNEISFGHVLLELFRTARRFDIVVQPQLVL 403
Query: 474 ILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 512
+ ++L +EGL P + + P+ + + P
Sbjct: 404 LEKTLLYIEGLGRQLYPQLDLWQTAKPFLERWMAEQVGP 442
>sp|A5WA47|UBIB_PSEP1 Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ubiB PE=3 SV=1
Length = 540
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 116/414 (28%), Positives = 201/414 (48%), Gaps = 14/414 (3%)
Query: 100 QILVALGSFSLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPP 159
Q L+ SL+LL+ R + R A LR LGP F+K GQ LSTR D+ PP
Sbjct: 28 QPLLPWWLASLRLLMPWRWLPRKPTELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPP 87
Query: 160 EYLEELSELQDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKY 219
+ +EL LQD +P F +A + IE +LG + +FS P+A+AS+ QV+ A+LK
Sbjct: 88 DIADELMLLQDRVPPFDPKKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLK- 146
Query: 220 SGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLINKYVDIITTDV-----VALIDEFASRVY 274
+G+ V VKV RPG++ I D + FLI K + + D V ++ ++ +Y
Sbjct: 147 TGEEVVVKVVRPGLKPVIAQDLAWL----FLIAKAAERASADARRLHPVEIVGDYEKTIY 202
Query: 275 QELNYVQEGQNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQG 334
EL+ ++E NA + ++ + D E + VP ++WD KVL ME + GV + + + Q
Sbjct: 203 DELDLLREAANASQLRRNFEDSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQR 262
Query: 335 LKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATP----EGKLAFLDFGMMSETPEEA 390
+ L G++ Q+ +FHAD HPGN+ + + +D G++ E
Sbjct: 263 TDMKLLAERGVEVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAED 322
Query: 391 RFAIIGHVVHMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFK 450
+ + ++ RDY +A+ + ++ + V A+R + + +++F
Sbjct: 323 QDYLARNLFAFFKRDYRRVAQLHIDSGWVPANTKVNEFEAAIRTVCEPIFEKPLKDISFG 382
Query: 451 TIVDGLGAVLYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAK 504
++ L ++ V L+ ++L +EGL P+ + + + PY +
Sbjct: 383 QVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPYLER 436
>sp|P73577|Y889_SYNY3 Uncharacterized protein slr0889 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0889 PE=3 SV=1
Length = 408
Score = 179 bits (453), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 119/369 (32%), Positives = 183/369 (49%), Gaps = 25/369 (6%)
Query: 132 LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLT 191
L +I LGP ++KLGQ LSTRPD+ PP Y+ L+ LQ +P P + ++RE
Sbjct: 46 LTKILVELGPFYIKLGQLLSTRPDLLPPRYINALTALQSNVPPLPWSAIEDLLQREFPQP 105
Query: 192 LDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLIRGVGFLI 251
L F I PIAA S+GQ+++A L+ SG+ VA+KV+RPGI+ + D LI+ V L+
Sbjct: 106 LGETFQEIESEPIAAGSIGQIHRAVLQ-SGETVAIKVKRPGIDVIVEQDSLLIKDVAELL 164
Query: 252 NKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRF-----KKLYADKEDVLVPDIFW 306
D+V L DEF V ELN+ E K + D +++P ++W
Sbjct: 165 ALTEFGQNYDIVKLADEFTQTVKAELNFDTEAAYTNNLRTNLAKTTWFDPNQLVIPKVYW 224
Query: 307 DYTSGKVLTMEWVEGV-----KLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHAD 361
+ T+ K L +EW++GV L + + + K ++ + +QL G+FHAD
Sbjct: 225 ELTNQKFLVLEWLDGVPILTADLTQPPSDKDIAEKKKEITTLLFRAFFQQLYVDGFFHAD 284
Query: 362 PHPGNLLATPEGKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYAL----- 416
PHPGN+ +G+LA +D GM+ R + ++ +V+ D + A+ L
Sbjct: 285 PHPGNIFYLADGRLALIDCGMVGRLDPRTRQLLTEMLLAIVDLDAKRCAQLTVELSESVG 344
Query: 417 --DFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALI 474
+F +VD + LR ++D S+SE NF +V + VPA L
Sbjct: 345 RVNFQRLEVDYERM---LRKYYD----LSLSEFNFSEVVYEFLRIARVNKLKVPACLGLY 397
Query: 475 LRSLTVLEG 483
+ L LEG
Sbjct: 398 AKCLANLEG 406
>sp|Q8PDW1|UBIB_XANCP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=ubiB PE=3 SV=1
Length = 557
Score = 179 bits (453), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 196/393 (49%), Gaps = 17/393 (4%)
Query: 126 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 185
+ R A LR LGP FVK GQ LSTR D+ PP+ EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 186 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 241
R LGL + F++ +P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADI 168
Query: 242 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 297
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 298 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 357
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 358 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 411
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 412 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 471
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAEVLIKLFRVAQRYELTLQPQL 405
Query: 472 ALILRSLTVLEGLALYADPNFKVLAASYPYFAK 504
L+ ++L +EG+ DP + A + P +
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVLER 438
>sp|Q4V052|UBIB_XANC8 Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain 8004) GN=ubiB PE=3
SV=1
Length = 557
Score = 179 bits (453), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 196/393 (49%), Gaps = 17/393 (4%)
Query: 126 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 185
+ R A LR LGP FVK GQ LSTR D+ PP+ EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 186 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 241
R LGL + F++ +P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADI 168
Query: 242 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 297
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 298 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 357
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 358 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 411
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 412 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 471
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAEVLIKLFRVAQRYELTLQPQL 405
Query: 472 ALILRSLTVLEGLALYADPNFKVLAASYPYFAK 504
L+ ++L +EG+ DP + A + P +
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVLER 438
>sp|B0RLZ0|UBIB_XANCB Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
campestris pv. campestris (strain B100) GN=ubiB PE=3
SV=1
Length = 557
Score = 177 bits (448), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 113/393 (28%), Positives = 195/393 (49%), Gaps = 17/393 (4%)
Query: 126 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 185
+ R A LR LGP FVK GQ LSTR D+ PP+ EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPPDVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 186 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 241
R LGL + F++ +P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFAAFDTTPLASASIAQVHAATLPPDANGLRREVVVKVLRPDIERQIDADI 168
Query: 242 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 297
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 298 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 357
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDVAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 358 FHADPHPGNLL--ATPEG----KLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 411
FHAD H GN+ + PE + LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERCLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 412 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 471
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAEVLIKLFRVAQRYELTLQPQL 405
Query: 472 ALILRSLTVLEGLALYADPNFKVLAASYPYFAK 504
L+ ++L +EG+ DP + A + P +
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVLER 438
>sp|B0TJ18|UBIB_SHEHH Probable ubiquinone biosynthesis protein UbiB OS=Shewanella
halifaxensis (strain HAW-EB4) GN=ubiB PE=3 SV=1
Length = 549
Score = 176 bits (447), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 114/405 (28%), Positives = 203/405 (50%), Gaps = 6/405 (1%)
Query: 122 DQNKRKRAAE-LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEA 180
+Q+K K E L+ LGP ++K GQ LSTR D+ E+ EEL+ LQD +P F A A
Sbjct: 46 NQHKDKVGGERLKLAMQELGPVYIKFGQMLSTRRDLLSDEWAEELAMLQDRVPPFDSAIA 105
Query: 181 FSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLD 240
+ IE EL ++S F+ P+A+AS+ QV+ A LK +G V +K+ RP +E+ + D
Sbjct: 106 RASIETELNAPIESYFNDFDDIPLASASISQVHTATLKSNGAAVVLKILRPDVEQKVHAD 165
Query: 241 FYLI-RGVGFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDV 299
L+ + FL +++++ + + ELN E NA + + + D +
Sbjct: 166 LLLMSQAADFLETLLGTNNRLRPAEVVEDYRTTIEGELNLKLEALNAIKLRNNFIDSNAL 225
Query: 300 LVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFH 359
+P ++ + +++ ME ++G+ ++++VA+E+QG + L G++ Q+ +FH
Sbjct: 226 YIPYMYEELCFTRLIVMERIDGIPVSDKVALEAQGTNLKLLAERGVELFFTQVFRDNFFH 285
Query: 360 ADPHPGNLLAT---PEGKLAF-LDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYA 415
AD HPGN+ + P L LD G+M EE + + + + NRDY +A+ Y
Sbjct: 286 ADMHPGNIFVSREHPNDPLYIGLDCGIMGTLTEEDKRYLAENFLAFFNRDYRRIAQLYIE 345
Query: 416 LDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALIL 475
++SPD DV A++ + N + E++F ++ L ++ V L+
Sbjct: 346 SGWVSPDTDVAAFEQAVKVVCEPMFNKPLDEISFGHVLLELFRTARRFDMVVQPQLVLLE 405
Query: 476 RSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNPYLRDALVE 520
++L +EGL P + + P+ + + P + A V+
Sbjct: 406 KTLLYIEGLGRQLYPQLDLWQTAKPFLEQWMAEQVGPKVMAAKVK 450
>sp|B2JCV1|UBIB_BURP8 Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phymatum (strain DSM 17167 / STM815) GN=ubiB PE=3 SV=1
Length = 527
Score = 176 bits (446), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 106/383 (27%), Positives = 195/383 (50%), Gaps = 8/383 (2%)
Query: 132 LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLT 191
LR LGP FVK GQ LSTR D+ P+ EL++LQD +P F A A + IE+ LG
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLRPDIATELAKLQDQVPPFDSAVAIAIIEKSLGAP 111
Query: 192 LDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIRGVG 248
+D+IF P+A+AS+ QV+ A LK ++G+ VAVKV RP + I D L+R +
Sbjct: 112 VDTIFDDFERVPVASASIAQVHFATLKIGQHAGKQVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 249 FLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWD 307
+ + D ++ EF ++ EL+ ++E N + ++ +A + +LVP+++W+
Sbjct: 172 VWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYWE 231
Query: 308 YTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNL 367
Y + VL ME + GV +++ + G+ + L G++ Q+ G+FHAD HPGN+
Sbjct: 232 YCTANVLVMERMVGVPISQVDTLRVAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNI 291
Query: 368 LATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDV 423
+ + G+ LDFG++ + + + + + RDY +A + ++
Sbjct: 292 QVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPATT 351
Query: 424 DVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEG 483
V + A+R + + ++ +++ ++ L + ++ + L+ +++ +EG
Sbjct: 352 RVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEG 411
Query: 484 LALYADPNFKVLAASYPYFAKRL 506
L DP + + PY + +
Sbjct: 412 LGRSLDPELDLWKTAKPYLERWM 434
>sp|C1DHS4|UBIB_AZOVD Probable ubiquinone biosynthesis protein UbiB OS=Azotobacter
vinelandii (strain DJ / ATCC BAA-1303) GN=ubiB PE=3 SV=1
Length = 537
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 110/400 (27%), Positives = 203/400 (50%), Gaps = 16/400 (4%)
Query: 123 QNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFS 182
++++ RA LR LGP F+K GQ LSTR D+ P + +EL+ LQD +P F ++ +
Sbjct: 51 RSEQPRAVRLRLALQDLGPIFIKFGQILSTRRDLLPEDIADELTWLQDRVPPFNPQQSVA 110
Query: 183 CIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFY 242
IE +LG +D F+ P+A+AS+ QV+ AQLK +G+ V VKV RPG++ I D
Sbjct: 111 LIEEQLGARVDEAFARFDSEPLASASVAQVHAAQLK-TGEEVVVKVVRPGLKAVIRQDLA 169
Query: 243 LIRGVGFLINKYVDIITTD-----VVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 297
+ +L + + +T+ +V ++ ++ +Y EL+ ++E NA + K+ +
Sbjct: 170 WL----YLFARLAERASTEARRLHLVDVVSDYEKTIYDELDLLREAANASQLKRNFEGSP 225
Query: 298 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 357
+ VP I+WD+ KVL ME + GV + + A+ QG + L G++ Q+ +
Sbjct: 226 LLYVPQIYWDWCRPKVLVMERIYGVPVTDLAALVDQGTDLKLLAERGVEIFFTQVFRDSF 285
Query: 358 FHADPHPGNLLATP----EGKLAFLDFGMM-SETPEEARFAIIGHVVHMVNRDYEAMARD 412
FHAD HPGN+ + + + +D G++ S TP++ + + +++ RDY +A+
Sbjct: 286 FHADMHPGNIFVSTRQPWDPQYIAIDCGIVGSLTPQDQDY-LARNLLAFFKRDYRKVAQL 344
Query: 413 YYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYA 472
+ ++ D V A+R + + +++F ++ L ++ V
Sbjct: 345 HIDSGWVPADTQVNEFEAAIRTVCEPIFEKPLKDISFGQLLLRLFQTARRFNMEVQPQLV 404
Query: 473 LILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 512
L+ ++L +EGL P + + P+ + + +P
Sbjct: 405 LLQKTLLNIEGLGRQLYPELDLWTTAKPFLERWMRKRMSP 444
>sp|B0KM38|UBIB_PSEPG Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain GB-1) GN=ubiB PE=3 SV=1
Length = 540
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 115/410 (28%), Positives = 200/410 (48%), Gaps = 15/410 (3%)
Query: 109 SLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSEL 168
SL+LL+ R + R A LR LGP F+K GQ LSTR D+ P + +EL L
Sbjct: 37 SLRLLMPWRWLPRKPTELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLL 96
Query: 169 QDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKV 228
QD +P F +A + IE +LG + +FS P+A+AS+ QV+ A+LK +G+ V VKV
Sbjct: 97 QDRVPPFDPQKAVALIEEQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKV 155
Query: 229 QRPGIEEAIGLDFYLIRGVGFLINKYVDIITTDV-----VALIDEFASRVYQELNYVQEG 283
RPG++ I D + FLI K + + D V ++ ++ +Y EL+ ++E
Sbjct: 156 VRPGLKPVIAQDLAWL----FLIAKAAERASADARRLHPVEIVGDYEKTIYDELDLLREA 211
Query: 284 QNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNT 343
NA + ++ + E + VP ++WD KVL ME + GV + + V + Q + L
Sbjct: 212 ANASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMVTLADQRTDMKLLAER 271
Query: 344 GIQCSLRQLLEYGYFHADPHPGNLLATP----EGKLAFLDFGMMSETPEEARFAIIGHVV 399
G++ Q+ +FHAD HPGN+ + + +D G++ E + + +++
Sbjct: 272 GVEVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLI 331
Query: 400 HMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAV 459
RDY +A+ + ++ V A+R + + +++F ++ L
Sbjct: 332 AFFKRDYRRVAQLHIDSGWVPAHTKVNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQT 391
Query: 460 LYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAKRLLTD 509
++ V L+ ++L +EGL P+ + + + P F +R + D
Sbjct: 392 ARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKP-FLERWMRD 440
>sp|B1J2S6|UBIB_PSEPW Probable ubiquinone biosynthesis protein UbiB OS=Pseudomonas putida
(strain W619) GN=ubiB PE=3 SV=1
Length = 539
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 111/405 (27%), Positives = 197/405 (48%), Gaps = 14/405 (3%)
Query: 109 SLKLLIDQRNGVLDQNKRKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSEL 168
SL+LL+ R ++ R A LR LGP F+K GQ LSTR D+ P + +EL L
Sbjct: 36 SLRLLMPWRWLPRTPSELSRGARLRLALQDLGPIFIKFGQLLSTRRDLLPTDIADELMLL 95
Query: 169 QDALPTFPDAEAFSCIERELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKV 228
QD +P F +A + IE +LG + +FS P+A+AS+ QV+ A+LK +G+ V VKV
Sbjct: 96 QDRVPPFDPKQAVALIESQLGAKVGEVFSRFDVEPLASASVAQVHAARLK-TGEEVVVKV 154
Query: 229 QRPGIEEAIGLDFYLIRGVGFLINKYVDIITTDV-----VALIDEFASRVYQELNYVQEG 283
RPG++ I D + FLI K + + D V ++ ++ +Y EL+ ++E
Sbjct: 155 VRPGLKPVIAQDLAWL----FLIAKGAERASADARRLHPVEIVGDYEKTIYDELDLLREA 210
Query: 284 QNARRFKKLYADKEDVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNT 343
NA + ++ + E + VP ++WD KVL ME + GV + + + Q + L
Sbjct: 211 ANASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKLLAER 270
Query: 344 GIQCSLRQLLEYGYFHADPHPGNLLATP----EGKLAFLDFGMMSETPEEARFAIIGHVV 399
G++ Q+ + +FHAD HPGN+ + + +D G++ E + + +++
Sbjct: 271 GVEVFFTQVFRHSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLI 330
Query: 400 HMVNRDYEAMARDYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAV 459
RDY +A + ++ V A+R + + +++F ++ L
Sbjct: 331 AFFKRDYRRVAELHIDSGWVPAHTKVNEFEAAIRTVCEPIFEKPLKDISFGQVLMRLFQT 390
Query: 460 LYQYPFNVPAYYALILRSLTVLEGLALYADPNFKVLAASYPYFAK 504
++ V L+ ++L +EGL P+ + + + P+ +
Sbjct: 391 ARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPFLER 435
>sp|Q5H616|UBIB_XANOR Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain KACC10331 / KXO85) GN=ubiB PE=3 SV=1
Length = 557
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 194/393 (49%), Gaps = 17/393 (4%)
Query: 126 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 185
+ R A LR LGP FVK GQ LSTR D+ P + EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 186 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 241
R LGL + F+S P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADI 168
Query: 242 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 297
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 298 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 357
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 358 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 411
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 412 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 471
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAQVLIKLFRVAQRYELTLQPQL 405
Query: 472 ALILRSLTVLEGLALYADPNFKVLAASYPYFAK 504
L+ ++L +EG+ DP + A + P +
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVLER 438
>sp|B2ST34|UBIB_XANOP Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain PXO99A) GN=ubiB PE=3 SV=1
Length = 557
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 194/393 (49%), Gaps = 17/393 (4%)
Query: 126 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 185
+ R A LR LGP FVK GQ LSTR D+ P + EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 186 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 241
R LGL + F+S P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADI 168
Query: 242 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 297
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 298 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 357
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 358 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 411
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 412 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 471
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAQVLIKLFRVAQRYELTLQPQL 405
Query: 472 ALILRSLTVLEGLALYADPNFKVLAASYPYFAK 504
L+ ++L +EG+ DP + A + P +
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVLER 438
>sp|Q2P8Q0|UBIB_XANOM Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas oryzae
pv. oryzae (strain MAFF 311018) GN=ubiB PE=3 SV=1
Length = 557
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 194/393 (49%), Gaps = 17/393 (4%)
Query: 126 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 185
+ R A LR LGP FVK GQ LSTR D+ P + EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGEAARLIVE 108
Query: 186 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 241
R LGL + F+S P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 RALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADI 168
Query: 242 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 297
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLSAELDLQREGANASVLRRFWEGSD 225
Query: 298 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 357
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 358 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 411
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 412 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 471
+ ++ +V + + A R+ + +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFTRPLSEISLAQVLIKLFRVAQRYELTLQPQL 405
Query: 472 ALILRSLTVLEGLALYADPNFKVLAASYPYFAK 504
L+ ++L +EG+ DP + A + P +
Sbjct: 406 ILLQKTLLNIEGVGRQLDPKLDIWAVARPVLER 438
>sp|Q145N7|UBIB_BURXL Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
xenovorans (strain LB400) GN=ubiB PE=3 SV=1
Length = 525
Score = 174 bits (442), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 194/381 (50%), Gaps = 8/381 (2%)
Query: 132 LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLT 191
LR LGP FVK GQ LSTR D+ P + EL++LQD +P F A A +E+ LG
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLPVDIANELAKLQDQVPPFDSAVAIGLVEKSLGAP 111
Query: 192 LDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIRGVG 248
+D +F P+A+AS+ QV+ A +K ++G+ VAVKV RP + I D L+R +
Sbjct: 112 VDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 249 FLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWD 307
+ + D ++ EF ++ EL+ ++E N + ++ +A + +LVP+++W+
Sbjct: 172 VWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYWE 231
Query: 308 YTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNL 367
+ + VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HPGN+
Sbjct: 232 FCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNI 291
Query: 368 LATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDV 423
+ + G+ LDFG++ + + + + + RDY +A + ++ P
Sbjct: 292 QVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPTT 351
Query: 424 DVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEG 483
V + A+R + + ++ +++ ++ L + ++ + L+ +++ +EG
Sbjct: 352 RVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEG 411
Query: 484 LALYADPNFKVLAASYPYFAK 504
L DP + + PY +
Sbjct: 412 LGRSLDPELDLWKTAKPYLER 432
>sp|Q8PQT0|UBIB_XANAC Probable ubiquinone biosynthesis protein UbiB OS=Xanthomonas
axonopodis pv. citri (strain 306) GN=ubiB PE=3 SV=1
Length = 557
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 114/393 (29%), Positives = 194/393 (49%), Gaps = 17/393 (4%)
Query: 126 RKRAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIE 185
+ R A LR LGP FVK GQ LSTR D+ P + EEL+ LQD + F A +E
Sbjct: 49 QSRGARLRLALQELGPIFVKFGQILSTRRDLIPADVAEELTLLQDRVKPFDGQAARLIVE 108
Query: 186 RELGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSG----QIVAVKVQRPGIEEAIGLDF 241
LGL + F+S P+A+AS+ QV+ A L + V VKV RP IE I D
Sbjct: 109 AALGLPVSVAFASFDTVPLASASIAQVHAATLPPDANGVRREVVVKVLRPEIERQIDADI 168
Query: 242 YLIRGVGFLINKYV----DIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKE 297
L+ + L+ + I +VVA E + EL+ +EG NA ++ + +
Sbjct: 169 ALLHSLATLVERTHPRADKIRPREVVA---EIEGTLAAELDLQREGANASVLRRFWEGSD 225
Query: 298 DVLVPDIFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGY 357
D+ VP++ W +T+ + LT+E V G+ ++ +++ G+ L G++ Q+ +
Sbjct: 226 DLYVPEVIWSHTAERALTLERVYGIPSDDIAKLDAAGIDRKALAAKGVRVFYTQVFRDNF 285
Query: 358 FHADPHPGNLL--ATPEGKL----AFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMAR 411
FHAD H GN+ + PE +L LDFG+M + +E ++ + + + + ++DY MA
Sbjct: 286 FHADAHAGNIWVDSDPERRLNPRFIALDFGIMGQLSQEDQYYLAENFMAIFHKDYRRMAE 345
Query: 412 DYYALDFLSPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYY 471
+ ++ +V + + A R+ + N +SE++ ++ L V +Y +
Sbjct: 346 LHVEAGWMPSNVRIDELEAAARSVCEPYFNRPLSEISLAQVLIKLFRVAQRYELTLQPQL 405
Query: 472 ALILRSLTVLEGLALYADPNFKVLAASYPYFAK 504
L+ ++L +EG+ DP + A + P +
Sbjct: 406 ILLQKTLLNIEGVGRQLDPRLDIWAVARPVLER 438
>sp|B2SX38|UBIB_BURPP Probable ubiquinone biosynthesis protein UbiB OS=Burkholderia
phytofirmans (strain DSM 17436 / PsJN) GN=ubiB PE=3 SV=1
Length = 525
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/381 (27%), Positives = 194/381 (50%), Gaps = 8/381 (2%)
Query: 132 LRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERELGLT 191
LR LGP FVK GQ LSTR D+ P + +EL++LQD +P F A A +E LG
Sbjct: 52 LRLALESLGPIFVKFGQVLSTRRDLLPVDIADELAKLQDQVPPFESAVAIRLVENALGAP 111
Query: 192 LDSIFSSISPSPIAAASLGQVYKAQLK---YSGQIVAVKVQRPGIEEAIGLDFYLIRGVG 248
+D +F P+A+AS+ QV+ A +K ++G+ VAVKV RP + I D L+R +
Sbjct: 112 VDVLFDDFERVPVASASIAQVHFATVKAGQHAGKAVAVKVLRPNMLPVIDSDLALLRDIA 171
Query: 249 FLINK-YVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDIFWD 307
+ + D ++ EF ++ EL+ ++E N + ++ +A + +LVP+++W+
Sbjct: 172 VWAERLWADGKRLKPREVVAEFDKYLHDELDLMREAANGSQLRRNFAGLDLLLVPEMYWE 231
Query: 308 YTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHPGNL 367
+ + VL ME + GV +++ + + G+ + L G++ Q+ G+FHAD HPGN+
Sbjct: 232 FCTPTVLVMERMVGVPISQVETLRAAGVDIPKLAREGVEIFFTQVFRDGFFHADMHPGNI 291
Query: 368 LATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLSPDV 423
+ + G+ LDFG++ + + + + + RDY +A + ++ P
Sbjct: 292 QVSLDPAHFGRYIALDFGIIGALSDFDKNYLAQNFLAFFKRDYHRVATLHLESGWVPPTT 351
Query: 424 DVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTVLEG 483
V + A+R + + ++ +++ ++ L + ++ + L+ +++ +EG
Sbjct: 352 RVEELESAIRAVCEPYFDRALKDISLGQVLMRLFSTSRRFNVEIQPQLVLLQKTMLNVEG 411
Query: 484 LALYADPNFKVLAASYPYFAK 504
L DP + + PY +
Sbjct: 412 LGRSLDPELDLWKTAKPYLER 432
>sp|A1TTA2|UBIB_ACIAC Probable ubiquinone biosynthesis protein UbiB OS=Acidovorax
citrulli (strain AAC00-1) GN=ubiB PE=3 SV=1
Length = 522
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 111/393 (28%), Positives = 193/393 (49%), Gaps = 8/393 (2%)
Query: 128 RAAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIERE 187
R LR RLGP FVK GQ LSTR D+ PP+ EL+ LQD +P F A + IER
Sbjct: 49 RGQRLREALERLGPIFVKFGQVLSTRRDLLPPDIANELALLQDRVPPFDPDVAVATIERA 108
Query: 188 LGLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQI---VAVKVQRPGIEEAIGLDFYLI 244
+ +F S P+A+AS+ QV+ A ++ + VAVKV RPG+ I D L+
Sbjct: 109 FRRPVGEVFVSFERVPVASASIAQVHFAIVRDRHGVEREVAVKVLRPGMLPVIDNDLGLM 168
Query: 245 RGV-GFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPD 303
R + G++ + D ++ EF + ++ EL+ ++E NA + ++ V +P+
Sbjct: 169 RAMAGWVESLSADGKRLKPRQVVAEFDNYLHDELDLIREAANAAQLRRNMERLGLVRIPE 228
Query: 304 IFWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPH 363
I WD+ +VL ME ++GV +++ + + G+ + L G+ Q+ G+FHAD H
Sbjct: 229 ILWDFCHPEVLVMERMKGVPISQIERLRAAGVDIRQLARDGVTIFFTQVFRDGFFHADMH 288
Query: 364 PGNLLATPE----GKLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFL 419
PGN+ + E G+ LDFG++ E + + + RDY+ +A + ++
Sbjct: 289 PGNIQVSLEPGSFGRYISLDFGIVGSLTEFDKEYLAQNFTAFFRRDYKRVAELHVESGWV 348
Query: 420 SPDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLT 479
D + + A+R + + + E++ ++ L ++ + L+ ++L
Sbjct: 349 PADTRINELESAIRAVCEPYFDRPLKEISLGMVLMRLFQTSRRFHVEIQPQLVLLQKTLL 408
Query: 480 VLEGLALYADPNFKVLAASYPYFAKRLLTDPNP 512
+EGL DP + + + P+ K +L P
Sbjct: 409 NIEGLGRQLDPELDLWSTAKPFLEKWMLDQMGP 441
>sp|B2VG47|UBIB_ERWT9 Probable ubiquinone biosynthesis protein UbiB OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=ubiB PE=3
SV=1
Length = 545
Score = 173 bits (438), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 204/424 (48%), Gaps = 25/424 (5%)
Query: 129 AAELRRIFTRLGPTFVKLGQGLSTRPDICPPEYLEELSELQDALPTFPDAEAFSCIEREL 188
A LR +LGP ++K GQ +STR D+ PP ++L+ LQD + F A+A IE L
Sbjct: 54 GARLRLALEQLGPVWIKFGQMMSTRRDLFPPHIADQLAMLQDKVAPFDGAQAKKLIEHSL 113
Query: 189 GLTLDSIFSSISPSPIAAASLGQVYKAQLKYSGQIVAVKVQRPGIEEAIGLDFYLI---- 244
G ++S F P+A+AS+ QV+ A LK +G+ V +KV RP I I D LI
Sbjct: 114 GAPVESQFDDFDIVPLASASIAQVHTATLKENGREVVIKVIRPDILPVIKADMKLIYRLA 173
Query: 245 RGVGFLINKYVDIITTDVVALIDEFASRVYQELNYVQEGQNARRFKKLYADKEDVLVPDI 304
R V L+ + +VVA ++ + ELN ++E NA + ++ +AD + + VP+I
Sbjct: 174 RWVPRLLPDGRRLRPQEVVA---DYEKTLLDELNLLREAANAIQLRRNFADGQMLYVPEI 230
Query: 305 FWDYTSGKVLTMEWVEGVKLNEQVAIESQGLKVLDLVNTGIQCSLRQLLEYGYFHADPHP 364
+ DY S +L ME + G+ +++ +E G+ + L G+Q Q+ +FHAD HP
Sbjct: 231 YSDYCSENMLVMERIYGIPISDVATLEQHGVNMKLLAERGVQVFFTQVFRDSFFHADMHP 290
Query: 365 GNLLATPEG----KLAFLDFGMMSETPEEARFAIIGHVVHMVNRDYEAMARDYYALDFLS 420
GN+ + E + +D G++ +E + + + + NRDY +A + ++
Sbjct: 291 GNIFVSYEHPEDPQYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVP 350
Query: 421 PDVDVTPIVPALRNFFDDALNSSVSELNFKTIVDGLGAVLYQYPFNVPAYYALILRSLTV 480
D +V A+R + ++E++F ++ L ++ V L+ ++L
Sbjct: 351 ADTNVEDFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLY 410
Query: 481 LEGLALYADPNFKVLAASYPYFAK------------RLLTDPNPYLRDALVEL--LFKDG 526
+EG+ P + + P+ R L + PY + L EL LF D
Sbjct: 411 VEGVGRQLYPQLDLWKTAKPFLENWIKDQIGIPAIVRALKEKAPYWAEKLPELPELFYDS 470
Query: 527 RFRH 530
+H
Sbjct: 471 LRQH 474
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,147,258
Number of Sequences: 539616
Number of extensions: 8363473
Number of successful extensions: 24364
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 112
Number of HSP's that attempted gapping in prelim test: 23579
Number of HSP's gapped (non-prelim): 373
length of query: 532
length of database: 191,569,459
effective HSP length: 122
effective length of query: 410
effective length of database: 125,736,307
effective search space: 51551885870
effective search space used: 51551885870
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)