Query 009526
Match_columns 532
No_of_seqs 286 out of 1332
Neff 6.5
Searched_HMMs 46136
Date Thu Mar 28 14:11:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1291 Mn2+ and Fe2+ transpor 100.0 7E-115 2E-119 900.2 22.9 450 63-519 19-486 (503)
2 PRK00701 manganese transport p 100.0 1.8E-83 3.9E-88 688.4 48.0 407 65-481 26-437 (439)
3 TIGR01197 nramp NRAMP (natural 100.0 1.9E-79 4.1E-84 647.2 41.4 372 70-448 1-390 (390)
4 COG1914 MntH Mn2+ and Fe2+ tra 100.0 1.6E-78 3.4E-83 640.4 46.4 405 64-482 8-414 (416)
5 PF01566 Nramp: Natural resist 100.0 1E-66 2.2E-71 547.0 36.9 356 92-455 1-358 (358)
6 PF03222 Trp_Tyr_perm: Tryptop 98.7 0.0001 2.3E-09 79.0 35.9 158 75-235 5-168 (394)
7 TIGR00813 sss transporter, SSS 98.7 8.3E-05 1.8E-09 79.7 34.0 118 80-202 12-134 (407)
8 PRK15419 proline:sodium sympor 98.6 0.00052 1.1E-08 75.8 39.5 119 82-202 51-178 (502)
9 TIGR02119 panF sodium/pantothe 98.6 0.00033 7.1E-09 76.7 37.3 118 82-201 51-174 (471)
10 PF00474 SSF: Sodium:solute sy 98.6 2.4E-05 5.2E-10 83.7 27.7 114 82-197 17-133 (406)
11 PRK15132 tyrosine transporter 98.6 0.00043 9.4E-09 74.4 34.9 325 74-426 4-343 (403)
12 PRK13629 threonine/serine tran 98.5 0.00062 1.3E-08 73.7 34.9 151 81-236 27-187 (443)
13 TIGR02121 Na_Pro_sym sodium/pr 98.4 0.0018 4E-08 71.2 36.1 118 83-202 48-174 (487)
14 PRK09442 panF sodium/panthothe 98.4 0.0084 1.8E-07 65.9 44.5 117 83-201 53-175 (483)
15 PRK09664 tryptophan permease T 98.3 0.0037 8.1E-08 67.4 33.8 325 74-426 10-355 (415)
16 COG1457 CodB Purine-cytosine p 98.3 0.003 6.5E-08 68.4 33.0 121 105-230 53-173 (442)
17 TIGR02711 symport_actP cation/ 98.2 0.0078 1.7E-07 67.4 36.1 121 79-202 75-198 (549)
18 PRK09395 actP acetate permease 98.2 0.016 3.5E-07 64.9 36.9 121 79-202 77-200 (551)
19 PRK12488 acetate permease; Pro 98.1 0.024 5.1E-07 63.6 36.5 121 79-202 75-198 (549)
20 PRK10483 tryptophan permease; 98.1 0.015 3.2E-07 62.9 33.4 153 74-233 12-173 (414)
21 PRK11375 allantoin permease; P 98.0 0.042 9E-07 60.7 36.9 44 104-147 60-103 (484)
22 TIGR00814 stp serine transport 98.0 0.0087 1.9E-07 64.4 29.3 125 107-235 33-170 (397)
23 TIGR00837 araaP aromatic amino 98.0 0.0072 1.6E-07 64.0 27.8 72 335-409 255-326 (381)
24 PF01235 Na_Ala_symp: Sodium:a 98.0 0.0061 1.3E-07 65.7 27.1 272 84-381 30-338 (416)
25 TIGR00930 2a30 K-Cl cotranspor 97.9 0.097 2.1E-06 62.4 40.3 27 351-377 387-413 (953)
26 COG0733 Na+-dependent transpor 97.9 0.051 1.1E-06 58.7 34.4 265 79-369 13-323 (439)
27 COG0591 PutP Na+/proline sympo 97.9 0.057 1.2E-06 59.8 34.4 124 76-201 40-172 (493)
28 PRK10249 phenylalanine transpo 97.8 0.099 2.1E-06 57.1 39.6 106 76-187 31-138 (458)
29 COG3949 Uncharacterized membra 97.7 0.023 5E-07 59.0 25.6 146 69-223 6-152 (349)
30 TIGR00800 ncs1 NCS1 nucleoside 97.7 0.13 2.9E-06 55.9 32.6 47 104-150 47-93 (442)
31 PRK11049 D-alanine/D-serine/gl 97.6 0.2 4.2E-06 54.9 40.6 61 86-150 41-101 (469)
32 PRK10484 putative transporter; 97.5 0.24 5.1E-06 55.2 41.0 70 81-150 48-118 (523)
33 PRK11017 codB cytosine permeas 97.5 0.23 4.9E-06 53.6 37.6 117 105-227 43-160 (404)
34 TIGR03648 Na_symport_lg probab 97.5 0.3 6.6E-06 54.7 41.2 119 79-202 40-163 (552)
35 PRK10238 aromatic amino acid t 97.4 0.32 6.9E-06 53.1 41.9 146 65-216 12-158 (456)
36 TIGR02358 thia_cytX probable h 97.3 0.32 6.9E-06 52.1 34.3 120 104-228 29-153 (386)
37 TIGR00796 livcs branched-chain 97.3 0.33 7.1E-06 52.0 34.6 68 83-151 5-72 (378)
38 TIGR00835 agcS amino acid carr 97.3 0.37 8E-06 52.4 30.2 275 83-384 57-368 (425)
39 TIGR00907 2A0304 amino acid pe 97.3 0.31 6.7E-06 53.4 29.5 41 429-469 392-434 (482)
40 PF02133 Transp_cyt_pur: Perme 97.2 0.078 1.7E-06 57.4 23.2 63 87-150 23-88 (440)
41 PRK11387 S-methylmethionine tr 97.2 0.52 1.1E-05 51.6 43.6 60 86-149 35-95 (471)
42 PRK15049 L-asparagine permease 97.1 0.67 1.4E-05 51.3 44.4 69 77-149 39-108 (499)
43 TIGR00910 2A0307_GadC glutamat 97.1 0.71 1.5E-05 51.2 37.7 49 100-149 29-82 (507)
44 TIGR00905 2A0302 transporter, 97.0 0.84 1.8E-05 50.0 40.4 37 335-374 270-306 (473)
45 COG0814 SdaC Amino acid permea 96.9 0.87 1.9E-05 49.4 34.2 156 77-236 13-177 (415)
46 KOG1289 Amino acid transporter 96.7 0.53 1.2E-05 52.1 23.8 160 199-370 189-363 (550)
47 TIGR00911 2A0308 L-type amino 96.6 1.6 3.4E-05 48.2 39.0 36 113-150 90-125 (501)
48 TIGR03810 arg_ornith_anti argi 96.5 1.7 3.8E-05 47.4 41.7 38 335-375 266-303 (468)
49 PRK11021 putative transporter; 96.3 2 4.3E-05 46.1 39.0 34 336-372 249-282 (410)
50 COG4147 DhlC Predicted symport 96.3 2.3 5.1E-05 46.5 30.8 76 124-201 95-171 (529)
51 TIGR00913 2A0310 amino acid pe 96.3 2.3 5.1E-05 46.4 44.6 37 113-150 49-85 (478)
52 COG1953 FUI1 Cytosine/uracil/t 96.3 2.5 5.3E-05 46.6 31.8 139 88-227 53-214 (497)
53 TIGR01773 GABAperm gamma-amino 96.3 2.3 4.9E-05 46.2 41.8 81 65-150 12-93 (452)
54 PRK10746 putative transport pr 96.3 2.4 5.2E-05 46.4 40.7 97 115-215 58-155 (461)
55 PRK10197 gamma-aminobutyrate t 96.2 2.4 5.2E-05 46.1 40.8 34 115-150 40-73 (446)
56 COG4145 PanF Na+/panthothenate 96.0 2.9 6.2E-05 44.6 32.0 118 79-204 47-176 (473)
57 PF13520 AA_permease_2: Amino 95.8 3.3 7.1E-05 44.3 35.0 38 336-376 261-298 (426)
58 COG1113 AnsP Gamma-aminobutyra 95.7 4.2 9.2E-05 44.4 33.9 126 86-216 28-159 (462)
59 TIGR00909 2A0306 amino acid tr 95.6 4 8.8E-05 43.7 34.7 38 337-377 268-305 (429)
60 TIGR00912 2A0309 spore germina 95.6 3.7 8E-05 43.0 31.7 106 110-224 40-152 (359)
61 TIGR00908 2A0305 ethanolamine 95.3 5.4 0.00012 43.1 41.4 37 112-150 52-88 (442)
62 PRK11357 frlA putative fructos 94.9 6.8 0.00015 42.4 35.4 37 111-149 54-90 (445)
63 TIGR03813 put_Glu_GABA_T putat 94.8 7.9 0.00017 42.4 37.9 63 81-149 11-78 (474)
64 COG1115 AlsT Na+/alanine sympo 94.7 7.9 0.00017 42.2 31.9 281 84-383 74-384 (452)
65 PF00324 AA_permease: Amino ac 94.4 0.36 7.9E-06 52.8 11.9 26 349-374 287-312 (478)
66 PRK10580 proY putative proline 94.2 10 0.00022 41.2 42.3 75 67-150 11-90 (457)
67 PRK15015 carbon starvation pro 93.1 1.3 2.7E-05 50.3 12.9 61 88-150 98-162 (701)
68 PF02554 CstA: Carbon starvati 93.0 2.4 5.3E-05 45.1 14.3 61 88-150 67-131 (376)
69 PF03845 Spore_permease: Spore 92.5 15 0.00032 38.0 29.5 116 109-233 37-159 (320)
70 PF05525 Branch_AA_trans: Bran 91.8 23 0.00049 38.7 37.2 330 79-439 9-353 (427)
71 PRK10655 potE putrescine trans 91.5 23 0.0005 38.2 42.7 32 116-149 54-85 (438)
72 PRK10435 cadB lysine/cadaverin 90.5 29 0.00063 37.5 42.7 36 111-149 48-83 (435)
73 TIGR03428 ureacarb_perm permea 89.9 34 0.00073 37.5 39.9 31 447-477 412-442 (475)
74 COG0833 LysP Amino acid transp 88.8 45 0.00098 37.4 29.9 142 76-230 60-206 (541)
75 PRK10644 arginine:agmatin anti 88.5 40 0.00087 36.5 42.7 37 111-149 51-87 (445)
76 PRK10836 lysine transporter; P 87.6 49 0.0011 36.4 42.5 61 66-129 16-78 (489)
77 PRK15433 branched-chain amino 83.5 76 0.0016 34.9 33.0 77 78-155 13-89 (439)
78 PF00209 SNF: Sodium:neurotran 82.6 87 0.0019 34.9 22.4 19 352-370 349-367 (523)
79 COG1966 CstA Carbon starvation 82.6 91 0.002 35.2 34.2 53 97-150 75-131 (575)
80 KOG1286 Amino acid transporter 81.5 1E+02 0.0022 35.0 21.0 31 349-379 316-349 (554)
81 PLN03074 auxin influx permease 78.4 1.1E+02 0.0025 33.7 28.8 50 388-441 349-398 (473)
82 KOG1303 Amino acid transporter 77.8 1.2E+02 0.0025 33.5 29.4 133 133-270 105-248 (437)
83 COG1114 BrnQ Branched-chain am 71.0 1.6E+02 0.0036 32.1 37.0 75 78-153 10-84 (431)
84 PRK03557 zinc transporter ZitB 69.6 1.5E+02 0.0031 30.9 16.4 19 204-222 81-99 (312)
85 PRK15238 inner membrane transp 68.1 1.9E+02 0.0042 31.8 38.2 61 85-149 21-86 (496)
86 KOG2349 Na+:iodide/myo-inosito 66.8 1.4E+02 0.003 34.0 14.6 106 84-195 58-168 (585)
87 PF06738 DUF1212: Protein of u 64.4 57 0.0012 31.0 9.8 11 173-183 116-126 (193)
88 TIGR00906 2A0303 cationic amin 64.0 2.5E+02 0.0055 31.6 40.6 28 349-376 312-339 (557)
89 COG0531 PotE Amino acid transp 58.8 2.5E+02 0.0055 29.9 40.1 35 336-373 275-309 (466)
90 PRK09509 fieF ferrous iron eff 57.9 2.3E+02 0.0049 29.1 14.2 18 204-221 73-90 (299)
91 PF11196 DUF2834: Protein of u 57.0 1.3E+02 0.0028 26.0 10.2 59 454-512 38-96 (97)
92 TIGR01297 CDF cation diffusion 48.8 2.8E+02 0.0061 27.5 12.4 17 204-220 52-68 (268)
93 PRK10420 L-lactate permease; P 41.5 2.2E+02 0.0048 32.3 11.0 41 254-297 490-530 (551)
94 PF06570 DUF1129: Protein of u 38.2 3.8E+02 0.0083 25.9 12.4 54 427-483 119-173 (206)
95 PF06609 TRI12: Fungal trichot 36.6 7.1E+02 0.015 28.6 17.8 21 107-127 81-101 (599)
96 COG3671 Predicted membrane pro 36.2 2.5E+02 0.0054 25.3 8.1 34 496-532 89-122 (125)
97 TIGR00795 lctP L-lactate trans 32.7 2.1E+02 0.0045 32.3 9.0 26 254-279 476-501 (530)
98 PLN00151 potassium transporter 32.6 9.4E+02 0.02 28.8 24.0 32 188-219 275-306 (852)
99 PF11654 DUF2665: Protein of u 31.2 89 0.0019 23.5 3.9 38 106-146 9-46 (47)
100 PRK09695 glycolate transporter 29.9 5E+02 0.011 29.5 11.5 41 254-297 498-538 (560)
101 KOG1304 Amino acid transporter 29.8 8E+02 0.017 27.2 32.9 79 392-474 364-443 (449)
102 COG0659 SUL1 Sulfate permease 28.9 9E+02 0.019 27.4 18.7 89 70-170 52-153 (554)
103 COG2966 Uncharacterized conser 28.5 4E+02 0.0087 27.0 9.5 9 173-181 138-146 (250)
104 PRK15433 branched-chain amino 27.6 8.6E+02 0.019 26.8 13.6 59 136-196 268-326 (439)
105 PF14362 DUF4407: Domain of un 26.6 3.1E+02 0.0068 28.1 8.6 34 169-204 32-65 (301)
106 TIGR00927 2A1904 K+-dependent 26.0 1.4E+02 0.0031 35.9 6.4 29 102-134 938-966 (1096)
107 PRK10692 hypothetical protein; 25.6 3.5E+02 0.0077 23.0 6.9 64 449-514 2-65 (92)
108 PF05525 Branch_AA_trans: Bran 24.5 9.6E+02 0.021 26.3 14.8 79 135-220 263-341 (427)
109 PF06724 DUF1206: Domain of Un 23.9 2.5E+02 0.0054 22.4 5.8 32 330-364 31-63 (73)
110 PF05313 Pox_P21: Poxvirus P21 23.4 6.9E+02 0.015 24.2 10.3 70 425-500 87-157 (189)
111 PF10762 DUF2583: Protein of u 23.3 3.5E+02 0.0075 23.0 6.4 64 449-514 2-65 (89)
112 PF05915 DUF872: Eukaryotic pr 22.7 2.7E+02 0.0059 24.8 6.3 26 492-518 84-109 (115)
113 KOG1288 Amino acid transporter 20.0 1.1E+03 0.023 28.0 11.4 29 352-380 373-401 (945)
No 1
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.2e-115 Score=900.24 Aligned_cols=450 Identities=61% Similarity=0.985 Sum_probs=427.6
Q ss_pred CCCcccHHHHHHhhchHHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhh
Q 009526 63 QVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREE 142 (532)
Q Consensus 63 ~~~~~~~~~l~~~lGPG~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~ 142 (532)
+.++++|||+|+|+||||+||+||+||||++||+|+||++||+|||++++++++++++|++++|+|+||||||+|.||+|
T Consensus 19 ~~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~ 98 (503)
T KOG1291|consen 19 KPPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREE 98 (503)
T ss_pred CccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 009526 143 YPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMAL 222 (532)
Q Consensus 143 y~~~~~~~l~i~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l 222 (532)
||||+|+.+|+++|++++++|+|||+|+|+|+|+|++ +|+|+||++|++||+++++++|||.||+|.++.+++..|++
T Consensus 99 Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~--IPL~~GVliTilD~f~fL~l~kyGiRklE~~~~~Li~~mai 176 (503)
T KOG1291|consen 99 YPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSN--IPLWAGVLITILDTFLFLFLDKYGIRKLEAFFAFLIVTMAI 176 (503)
T ss_pred ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChhhhhhcccccCCC---hhHHHHHHHHHcccchhHHHHHHHHHhhhhcCCCCcccchHHhhhhHHHHH
Q 009526 223 SFAWMFGDTQPSGKELLVGVLVPRLS---SKTIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALNYYSIES 299 (532)
Q Consensus 223 ~F~~~~~~~~P~~~~v~~G~~vP~~~---~~~l~~avaiiGatimP~~lflhS~lV~~r~~~~~~~~~~~~~l~~~~~Ds 299 (532)
||.+++..++|+.+|++.|.++|+++ ++.+++++|++||+|||||+|+||++||+|+.|++.+++++|+++|..+|+
T Consensus 177 ~F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies 256 (503)
T KOG1291|consen 177 SFGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIES 256 (503)
T ss_pred HHheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHH
Confidence 99999999999999999999999987 789999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-hhhccCCCcccc-------------cCchhHHHHHHHhhcCChhHHHHHHHHHHHhhhchh
Q 009526 300 SVALLVSFMINLFLTTVF-AKGFYGTKQANS-------------IGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSS 365 (532)
Q Consensus 300 ~i~l~vs~lIn~~i~~v~-A~~~~~~~~~~~-------------~~l~~a~~~L~~~~G~~~~~a~~ifaigLlaAg~sS 365 (532)
.++++++|.||.+++.++ |+.||++.+.+. .++.+++.+|++.+|+ ++.++|++|+++|||||
T Consensus 257 ~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g~---~a~~Ifai~lLasGQSs 333 (503)
T KOG1291|consen 257 AIALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFGP---AALYIFAIGLLASGQSS 333 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhcc---HHHHHHHHHHHHCCCcc
Confidence 999999999999999999 999998775432 3477889999999999 99999999999999999
Q ss_pred hhhhhhhHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 009526 366 TITGTYAGQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPFALIPLLTLVSKE 445 (532)
Q Consensus 366 tit~t~ag~~v~~gfl~~~~~~~~r~l~t~~iaivpal~v~~~~g~~~~~l~~l~~~~~vl~s~~LPfalipll~l~n~k 445 (532)
++||||+||++||||+||+++||.||+.||++||+|++++++.+|.+ +++++++++||+|+++|||+++|++.|+|+|
T Consensus 334 titgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~--~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r 411 (503)
T KOG1291|consen 334 TITGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGED--GLSGLNDFLNVLQSLQLPFAVIPLLTFTSSR 411 (503)
T ss_pred cceeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcc--cHHHHHHHHHHHHHHhhhHHHhhHHhhhccH
Confidence 99999999999999999999999999999999999999999988854 5999999999999999999999999999999
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Q 009526 446 QVMGVFRIGPVLERLAWTVAALVMVINGYLLLDFFVSEVK-GLLFGFLVFTGTAAYVAFIIYLITRGSDLSSNCF 519 (532)
Q Consensus 446 ~iMG~~~~~~~~~il~~i~~~~i~~lni~~v~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~ 519 (532)
++||+|+|++..+..+|.+..+++.+|.|++++.+..... ++..+..+....++|++|++||+.++.+....|.
T Consensus 412 ~IM~~~~~~~~~~~~~~~~~~~~~~in~y~~v~~~~~~~~~~~~~~~~~~~~~~~y~~~i~yL~~~~l~~~~~~~ 486 (503)
T KOG1291|consen 412 KIMGVFKNGLVTEELTWTVAALVLGINGYFLVSFFWSLVGKHSKIVVTVNVWTLAYLAFILYLAATCLNAYSIIS 486 (503)
T ss_pred HHhhhhccCccceeeeehheeeeeeeeeEEeeeehhhhcCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999988866655 4557788889999999999999999865434443
No 2
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=1.8e-83 Score=688.41 Aligned_cols=407 Identities=38% Similarity=0.679 Sum_probs=378.8
Q ss_pred CcccHHHHHHhhchHHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCC
Q 009526 65 PPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYP 144 (532)
Q Consensus 65 ~~~~~~~l~~~lGPG~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~ 144 (532)
++..||++++++|||++++++|+||||++|++|+||+|||+|+|++++++++++++|++++|+|++|||+++|.||||||
T Consensus 26 ~~~~~~~~l~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~ 105 (439)
T PRK00701 26 GRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIATGRDLAQACRDRYP 105 (439)
T ss_pred cchhHHHHHHHcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCC
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 009526 145 NWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSF 224 (532)
Q Consensus 145 ~~~~~~l~i~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F 224 (532)
|+.++++|+.++++++++|++|++|+++|+|+++| +|.+++++++++++++++++.+++||++|+++..++++|.+||
T Consensus 106 ~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~g--ip~~~~v~i~~~~~~~~l~l~~~~y~~~E~i~~~lv~~m~l~f 183 (439)
T PRK00701 106 RPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFG--IPLLQGALITALDTFLILMLQRRGFRPLEAIIGGLLLVIAAAF 183 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 8999999999988887776667788999999999999999999
Q ss_pred HHHHHhcCCChhhhhhcccccC---CCh-hHHHHHHHHHcccchhHHHHHHHHHhhhhcCCCCcccchHHhhhhHHHHHH
Q 009526 225 AWMFGDTQPSGKELLVGVLVPR---LSS-KTIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALNYYSIESS 300 (532)
Q Consensus 225 ~~~~~~~~P~~~~v~~G~~vP~---~~~-~~l~~avaiiGatimP~~lflhS~lV~~r~~~~~~~~~~~~~l~~~~~Ds~ 300 (532)
+++++.++|||+|+++| ++|+ +|+ ++++.++|++|||+||||+|+||+++++|+.++ +++..++++|+.|+|+.
T Consensus 184 ~~~~~~~~P~~~~v~~G-l~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~~k~~~~-~~~~~~~~l~~~r~Dt~ 261 (439)
T PRK00701 184 IVELFLAQPDWAAVLKG-FIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVVGR-TGEEKREALRFTRIDSA 261 (439)
T ss_pred HHHHheeCCCHHHHhcc-cCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHHhccccC-ChHhHHHHHHHHHHHHH
Confidence 99999999999999999 7999 874 678999999999999999999999999885443 33456788999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCcccccCchhHHHHHHHhhcCChhHHHHHHHHHHHhhhchhhhhhhhhHHHHHhhh
Q 009526 301 VALLVSFMINLFLTTVFAKGFYGTKQANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGF 380 (532)
Q Consensus 301 i~l~vs~lIn~~i~~v~A~~~~~~~~~~~~~l~~a~~~L~~~~G~~~~~a~~ifaigLlaAg~sStit~t~ag~~v~~gf 380 (532)
+++.+++++|.++++++|.++|+++..+..+..|+++.|+|.+|+ ++.++|++|+++|||+|++++++++|+++|+|
T Consensus 262 ~g~~i~~li~~ai~v~~A~~l~~~g~~~~~~~~~~a~~L~p~~G~---~a~~lFaiGL~aag~sS~i~~~~a~~~v~~~~ 338 (439)
T PRK00701 262 IALTIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSPLLGA---AAATLFGIALLASGLSSTVVGTLAGQIVMEGF 338 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHHhH---HHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999988754456789999999999999 99999999999999999999999999999999
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCChHHHHH
Q 009526 381 LNLPMKKWLRALITRSCAIVPTMIVALIFN-TSEASLDILNEWLNVLQSIQIPFALIPLLTLVSKEQVMGVFRIGPVLER 459 (532)
Q Consensus 381 l~~~~~~~~r~l~t~~iaivpal~v~~~~g-~~~~~l~~l~~~~~vl~s~~LPfalipll~l~n~k~iMG~~~~~~~~~i 459 (532)
++|+.++|.||..+|.++++|++++.++.+ .+ +.++++++|++|+++||++++|+++++|||++||+|||+++.|+
T Consensus 339 l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~---p~~lli~aqv~~~i~LP~~~~~ll~l~~~~~imG~~~~~~~~~~ 415 (439)
T PRK00701 339 LRLRIPLWVRRLITRGLAMVPALIVILLGGELD---PTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVKI 415 (439)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHhhccchhhHHHHH
Confidence 999999999999999999999988755432 33 56888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 009526 460 LAWTVAALVMVINGYLLLDFFV 481 (532)
Q Consensus 460 l~~i~~~~i~~lni~~v~~~~~ 481 (532)
++|++.++++.+|++++++.++
T Consensus 416 ~~~~~~~~i~~l~~~~~~~~~~ 437 (439)
T PRK00701 416 IAWIIAVLIVALNIYLLYQTFT 437 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998775
No 3
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=1.9e-79 Score=647.17 Aligned_cols=372 Identities=46% Similarity=0.801 Sum_probs=339.9
Q ss_pred HHHHHhhchHHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHH
Q 009526 70 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARF 149 (532)
Q Consensus 70 ~~l~~~lGPG~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 149 (532)
||+++++|||++++++|+||||++|++|+||+|||+|+|++++++++++++|++++|+|++|||+++|.|||||||+.++
T Consensus 1 ~~~l~~lGPg~lva~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 1 RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRI 80 (390)
T ss_pred CcHHHHhChHHHHHHHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCchHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 009526 150 VLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFG 229 (532)
Q Consensus 150 ~l~i~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~~~ 229 (532)
.+|++++++++++|++|++|+|+|+|+++| +|.|+++++++++++.++++.+++||++|+++..++++|.+||+++++
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~g--~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~~~lv~~m~~~f~~~~~ 158 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLLSH--IPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELF 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHhCCceeHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 899999999888888777777888999999999999999999999999
Q ss_pred hcCCChhhhhhcccccCCC---hhHHHHHHHHHcccchhHHHHHHHHHhhhhcCCCCcccchHHhh-------------h
Q 009526 230 DTQPSGKELLVGVLVPRLS---SKTIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEAL-------------N 293 (532)
Q Consensus 230 ~~~P~~~~v~~G~~vP~~~---~~~l~~avaiiGatimP~~lflhS~lV~~r~~~~~~~~~~~~~l-------------~ 293 (532)
.++|||+|+++|.++|++| +++++.++|++|||+||||+|+||++||+|++++++++.+++++ +
T Consensus 159 ~~~P~~~~~~~g~~vP~~p~~~~~~~~~~vaiiGttv~p~~~fl~s~lv~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (390)
T TIGR01197 159 YAKPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVS 238 (390)
T ss_pred eeCCCHHHHhhcccCCCccCCCCchHHHHHHHHhhhhhHHHHHHHHHhhhccccCcccchhhhhhhhhchhHHHHHHHHH
Confidence 9999999999998899875 47789999999999999999999999999998876654444434 5
Q ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCCc-ccccCchhHHHHHHHhhcCChhHHHHHHHHHHHhhhchhhhhhhh
Q 009526 294 YYSIESSVALLVSF-MINLFLTTVFAKGFYGTKQ-ANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTY 371 (532)
Q Consensus 294 ~~~~Ds~i~l~vs~-lIn~~i~~v~A~~~~~~~~-~~~~~l~~a~~~L~~~~G~~~~~a~~ifaigLlaAg~sStit~t~ 371 (532)
+.|.|+.++++... ++|.++++++|..+|+++. .+..++.++++.|+|.+|+ ++.++|++||++|||||++|+++
T Consensus 239 ~~~~d~~~~i~~~~~~v~~~ilv~aaa~l~~~~~~~~~~~~~~~~~~L~p~~G~---~a~~lF~igLlaAG~sS~it~~~ 315 (390)
T TIGR01197 239 FSINEFVIALFTAALFVNTNILVVAGATLFNSNNNADAADLFSIGVLLGCLFSP---AAGYIFAVGLLAAGQSSGMVGTY 315 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcCCHHHHHHHHHHHhhH---HHHHHHHHHHHHhHHHHHHHHHH
Confidence 56667777776644 4899999999999997543 4566788999999999999 99999999999999999999999
Q ss_pred hHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 009526 372 AGQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPFALIPLLTLVSKEQVM 448 (532)
Q Consensus 372 ag~~v~~gfl~~~~~~~~r~l~t~~iaivpal~v~~~~g~~~~~l~~l~~~~~vl~s~~LPfalipll~l~n~k~iM 448 (532)
+||++++||+|||.++|.|++.+|+++++|++++..+.+.. +++++++++|++|+++||++++|+++++|||++|
T Consensus 316 ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~~--~p~~liv~aQv~~~l~LP~~~i~Ll~~~~~k~lM 390 (390)
T TIGR01197 316 SGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGRE--GLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390 (390)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 99999999999999999999999998999998877665433 2678999999999999999999999999999998
No 4
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-78 Score=640.42 Aligned_cols=405 Identities=37% Similarity=0.626 Sum_probs=380.0
Q ss_pred CCcccHHHHHHhhchHHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhC
Q 009526 64 VPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEY 143 (532)
Q Consensus 64 ~~~~~~~~l~~~lGPG~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y 143 (532)
.++.+||+.++++|||++|+.+|+||||++|++|+|++|||+|+|++++++++++++|++++|+|++|||+++|.|||||
T Consensus 8 ~~~~~~~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y 87 (416)
T COG1914 8 KKRSTLRKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERY 87 (416)
T ss_pred chHHHHHHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHc
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 009526 144 PNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALS 223 (532)
Q Consensus 144 ~~~~~~~l~i~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~ 223 (532)
+|+.++++|+.+|++++++|++|++|+|+|+|++++ +|+.++++++++++++++..+ |||++|++...++.++.+|
T Consensus 88 ~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~--ip~~~g~iItav~~~iil~~~--~~r~~E~~v~~l~~~~~i~ 163 (416)
T COG1914 88 LPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG--IPLIIGAVITAVDVLIILLLK--GYRLLERVVLILGLVLVIL 163 (416)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 999999999999988766655 6799999999999999999
Q ss_pred HHHHHHhcCCChhhhhhcccccCCCh-hHHHHHHHHHcccchhHHHHHHHHHhhhhcCCCCcccchHHhhhhHHHHHHHH
Q 009526 224 FAWMFGDTQPSGKELLVGVLVPRLSS-KTIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALNYYSIESSVA 302 (532)
Q Consensus 224 F~~~~~~~~P~~~~v~~G~~vP~~~~-~~l~~avaiiGatimP~~lflhS~lV~~r~~~~~~~~~~~~~l~~~~~Ds~i~ 302 (532)
|+++++.++|+++++.++.++|+.|. +.++.++|++|||||||++|+||++||++.. +++..+++.|+.++|+.++
T Consensus 164 ~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~---~~~~~~~~~~~~~~d~~i~ 240 (416)
T COG1914 164 FVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGI---KGEENLRALRYSRIDTIIG 240 (416)
T ss_pred HHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccc---cchhHHHHHHHHHHHHHHH
Confidence 99999999999999999988999876 8899999999999999999999999998332 2345678999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCc-ccccCchhHHHHHHHhhcCChhHHHHHHHHHHHhhhchhhhhhhhhHHHHHhhhc
Q 009526 303 LLVSFMINLFLTTVFAKGFYGTKQ-ANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFL 381 (532)
Q Consensus 303 l~vs~lIn~~i~~v~A~~~~~~~~-~~~~~l~~a~~~L~~~~G~~~~~a~~ifaigLlaAg~sStit~t~ag~~v~~gfl 381 (532)
+....++|.+++++++.++|.++. .+..+.+++.+.+.|.+|+ .+..+|+++++++|++|+.+++|++|.+|++++
T Consensus 241 ~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~---~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~ 317 (416)
T COG1914 241 MIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGS---AAFVLFGVALLAAGLSSTVVATYAGQIVMEGFL 317 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhh---HHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhh
Confidence 999999999999999999998876 3456788999999999998 899999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCChHHHHHHH
Q 009526 382 NLPMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPFALIPLLTLVSKEQVMGVFRIGPVLERLA 461 (532)
Q Consensus 382 ~~~~~~~~r~l~t~~iaivpal~v~~~~g~~~~~l~~l~~~~~vl~s~~LPfalipll~l~n~k~iMG~~~~~~~~~il~ 461 (532)
+++.++|.||..+|.++++|+..+.+.+| + +.+++.++|+++++++|++++|++.+++||++||+|+|+++.++++
T Consensus 318 ~~~~~~~~r~~i~~~~~~ip~~~i~i~~g-~---~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~ 393 (416)
T COG1914 318 NWRIPLWRRRLITRTFAIVPGLAIIILFG-D---PARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLG 393 (416)
T ss_pred cccCchHhhHHHHHHHHHHHHHHHHHHHc-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHH
Confidence 99999999999999999999888888887 4 5689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 009526 462 WTVAALVMVINGYLLLDFFVS 482 (532)
Q Consensus 462 ~i~~~~i~~lni~~v~~~~~~ 482 (532)
|++++++..+|++++++.+.+
T Consensus 394 ~~v~~~i~~L~i~li~~~~~~ 414 (416)
T COG1914 394 WIVVILIVALNIILLVGTLGG 414 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988754
No 5
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=100.00 E-value=1e-66 Score=546.98 Aligned_cols=356 Identities=35% Similarity=0.571 Sum_probs=328.7
Q ss_pred hhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009526 92 LEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSA 171 (532)
Q Consensus 92 i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l~i~~~la~i~~di~eviG~A 171 (532)
|+|++|+||+|||+|+|++++++++++++|++++|+|++|||++.|.|||+|||+..+++|+.+++++++++++|++|++
T Consensus 1 ~~t~~~aGA~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a 80 (358)
T PF01566_consen 1 IATATQAGAQYGYSLLWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIA 80 (358)
T ss_pred CcchHHhHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcccccCCCh-h
Q 009526 172 IAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTQPSGKELLVGVLVPRLSS-K 250 (532)
Q Consensus 172 ial~lL~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~~~~~~P~~~~v~~G~~vP~~~~-~ 250 (532)
+|+++++| +|.+.+++++++++++++++.+.+||++|+++++++.+|.+||+++++.++|||+++.+|++.|++|. +
T Consensus 81 ~al~ll~g--~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~ 158 (358)
T PF01566_consen 81 IALNLLFG--IPLWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPG 158 (358)
T ss_pred HHHHhhcC--CCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchh
Confidence 99999997 89999999999999888885566679999999999999999999999999999999999987799998 8
Q ss_pred HHHHHHHHHcccchhHHHHHHHHHhhhhcCCCCcccchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCccccc
Q 009526 251 TIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALNYYSIESSVALLVSFMINLFLTTVFAKGFYGTKQANSI 330 (532)
Q Consensus 251 ~l~~avaiiGatimP~~lflhS~lV~~r~~~~~~~~~~~~~l~~~~~Ds~i~l~vs~lIn~~i~~v~A~~~~~~~~~~~~ 330 (532)
++..++|++|||+||||+|+||+++++|+++.+++++ ++++|+.|+|+.+++++++++|.++++++|.++|+.+. +..
T Consensus 159 ~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~-~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~-~~~ 236 (358)
T PF01566_consen 159 SLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRP-DEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGS-EVE 236 (358)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-chh
Confidence 9999999999999999999999999999987643211 26899999999999999999999999999999994332 356
Q ss_pred CchhHHHHHHHhhc-CChhHHHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 009526 331 GLVNAGQYLQEKYG-GGYLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIF 409 (532)
Q Consensus 331 ~l~~a~~~L~~~~G-~~~~~a~~ifaigLlaAg~sStit~t~ag~~v~~gfl~~~~~~~~r~l~t~~iaivpal~v~~~~ 409 (532)
+.+|+++.|+|.+| + ++.++|++|+++|+|||+++++++++++++++++++.+++.|+..++...+.|+.+++...
T Consensus 237 ~~~~~~~~L~~~~G~~---~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (358)
T PF01566_consen 237 TAAQAAQALEPLLGSP---WARYLFAIGLFAAGFSSSITATLAGAYVLADFLGWRWSLSRRRLITRAIAFIPALIIALLI 313 (358)
T ss_pred hHHHHHHHHHHhcCch---HHHHhHHHHHHHHHHhhHHHhccccceehHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999 8 9999999999999999999999999999999999999998888888888888888877766
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCChH
Q 009526 410 NTSEASLDILNEWLNVLQSIQIPFALIPLLTLVSKEQVMGVFRIGP 455 (532)
Q Consensus 410 g~~~~~l~~l~~~~~vl~s~~LPfalipll~l~n~k~iMG~~~~~~ 455 (532)
+... .+.++++++|+++++.+|++++|+++++|||++||+|||+|
T Consensus 314 ~~~~-~~~~ll~~~~v~~~~~lP~~~~~l~~l~n~~~~mG~~~n~~ 358 (358)
T PF01566_consen 314 GAPG-APVQLLIFAQVLNSLLLPFVAIPLLLLANDKKLMGEYRNSW 358 (358)
T ss_pred cchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhCcccCC
Confidence 6442 25689999999999999999999999999999999999986
No 6
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.72 E-value=0.0001 Score=78.98 Aligned_cols=158 Identities=18% Similarity=0.188 Sum_probs=97.5
Q ss_pred hhchHHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhc--CCCHHHHHHhhCCchHHHHHH
Q 009526 75 FTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVAT--GRHLAELCREEYPNWARFVLW 152 (532)
Q Consensus 75 ~lGPG~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvT--Gk~Lae~~r~~y~~~~~~~l~ 152 (532)
.+|=.+++....+|+|=+.-=.++|...=.-.+.+++++-++++.-+.+-+|.-.-+ |.++.+..+|++||+.+++.+
T Consensus 5 ~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~~ 84 (394)
T PF03222_consen 5 ILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVIG 84 (394)
T ss_pred HHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHH
Confidence 456666676677888877766664443333445555566666677777777777765 788999999999998887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 009526 153 FMAEVALIGADIQEVIGSAIAIQILS----HGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMF 228 (532)
Q Consensus 153 i~~~la~i~~di~eviG~Aial~lL~----gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~~ 228 (532)
+...+...+...+-+.|.+--+.-++ +.++|.+.+.++..+....+++ .|.|.++|+...++..|.++|+...
T Consensus 85 ~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~---~g~~~v~~~n~~lv~~~i~~~~~l~ 161 (394)
T PF03222_consen 85 ISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVY---FGTKAVDRINRVLVFGMIISFIILV 161 (394)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 64333322222222222222222222 2235666655554333222233 3457899999999999999998877
Q ss_pred HhcCCCh
Q 009526 229 GDTQPSG 235 (532)
Q Consensus 229 ~~~~P~~ 235 (532)
...-|.|
T Consensus 162 ~~~~p~~ 168 (394)
T PF03222_consen 162 VYLIPHW 168 (394)
T ss_pred HHHhhhc
Confidence 7666655
No 7
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.69 E-value=8.3e-05 Score=79.71 Aligned_cols=118 Identities=11% Similarity=0.167 Sum_probs=81.1
Q ss_pred HHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHH----HHHHHHHHHhHhhhhcCCCHHHHHHhhCCc-hHHHHHHHH
Q 009526 80 FLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATV----MGLLIQLLSARVGVATGRHLAELCREEYPN-WARFVLWFM 154 (532)
Q Consensus 80 ~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i----~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~-~~~~~l~i~ 154 (532)
+-+.+.+++.+......+.+-++|+.-+|..+...+ .++++...--|.+ ..+..|.+++||++ ..+...-+.
T Consensus 12 ~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~~~~ 88 (407)
T TIGR00813 12 ASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFGKRILRGLSVLS 88 (407)
T ss_pred HHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhCchHHHHHHHHH
Confidence 345567899999999999999999888775554332 2233333323433 67899999999998 455443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 009526 155 AEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLE 202 (532)
Q Consensus 155 ~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~ 202 (532)
..+..+.....++.|.+..++.++| +|.+.++++.++.+.+...++
T Consensus 89 ~i~~~~~~~~~q~~g~~~il~~~~g--i~~~~~~ii~~~i~~~Yt~~G 134 (407)
T TIGR00813 89 LILYIFLYMSVDLFSGALLIELITG--LDLYLSLLLLGAITILYTVFG 134 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHHHHHHc
Confidence 3444555556678899988988888 999999888877655544443
No 8
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.64 E-value=0.00052 Score=75.83 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=76.7
Q ss_pred HHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHH-HHHHHHHhHhhhhc-----CCCHHHHHHhhCCch---HHHHHH
Q 009526 82 MSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMG-LLIQLLSARVGVAT-----GRHLAELCREEYPNW---ARFVLW 152 (532)
Q Consensus 82 ~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~-~~~Q~laaRlgvvT-----Gk~Lae~~r~~y~~~---~~~~l~ 152 (532)
+.++++....+......+.++|++-.|..+-..+.. +....+..|+-.-+ -.+..|..++||++. .+.+..
T Consensus 51 ~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~~~ 130 (502)
T PRK15419 51 AGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISA 130 (502)
T ss_pred HHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHHHH
Confidence 445678888888888888899998878654332221 22334455655432 247899999999853 333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 009526 153 FMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLE 202 (532)
Q Consensus 153 i~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~ 202 (532)
+...+..+.....++.|.+..++.++| +|.+.++++.++.+.+...++
T Consensus 131 i~~~~~~~~~~~~ql~~~~~~l~~~~g--i~~~~~iii~~~iv~iYt~~G 178 (502)
T PRK15419 131 LVILLFFTIYCASGIVAGARLFESTFG--MSYETALWAGAAATILYTFIG 178 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHhh
Confidence 333333333334556788888888888 899999888877665554444
No 9
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.63 E-value=0.00033 Score=76.66 Aligned_cols=118 Identities=15% Similarity=0.240 Sum_probs=74.7
Q ss_pred HHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHH-HHHhHh---hhh-cCCCHHHHHHhhCCc-hHHHHHHHHH
Q 009526 82 MSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQ-LLSARV---GVA-TGRHLAELCREEYPN-WARFVLWFMA 155 (532)
Q Consensus 82 ~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q-~laaRl---gvv-TGk~Lae~~r~~y~~-~~~~~l~i~~ 155 (532)
+.+++++.+........+.++|+...|......++.+++- .++.|+ +-- .-.++.|..++||++ ..++...+..
T Consensus 51 ~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~i~~ 130 (471)
T TIGR02119 51 LVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARYNNKFLVWLSSISL 130 (471)
T ss_pred HHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCCchHHHHHHHH
Confidence 4556788888888888888888764333222222222211 122232 211 346899999999995 4455444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 009526 156 EVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFL 201 (532)
Q Consensus 156 ~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l 201 (532)
.+..+.....++.|.+..++.++| +|.+.++++.++.+.+...+
T Consensus 131 i~~~~~~~~~ql~g~g~~l~~~~g--i~~~~~iii~~~iv~iYt~~ 174 (471)
T TIGR02119 131 LVFFFSAMVAQFIGGARLIESLTG--LSYLTALFIFSSSVLIYTTF 174 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHh
Confidence 444555556678888999998888 99999988887654444443
No 10
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.63 E-value=2.4e-05 Score=83.66 Aligned_cols=114 Identities=17% Similarity=0.225 Sum_probs=81.5
Q ss_pred HHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHH-HHHHhHhhhhcCCCHHHHHHhhCCchH--HHHHHHHHHHH
Q 009526 82 MSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLI-QLLSARVGVATGRHLAELCREEYPNWA--RFVLWFMAEVA 158 (532)
Q Consensus 82 ~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~-Q~laaRlgvvTGk~Lae~~r~~y~~~~--~~~l~i~~~la 158 (532)
+.++.++.+++....+.+.++|+.-+|..+-..+...++ -.++-|+=-....+..|.+++||++.. +.+..+...+.
T Consensus 17 ~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~ 96 (406)
T PF00474_consen 17 LVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKALLRILAAIIIIVF 96 (406)
T ss_dssp HHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchhhhhhcccccchh
Confidence 345678999999999999999999998887666655444 345777777788899999999999887 55545544555
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 009526 159 LIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFI 197 (532)
Q Consensus 159 ~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~ 197 (532)
.+.....++.|.+..++.++| +|.+.++++..+.+.+
T Consensus 97 ~~~~~~~q~~~~~~~~~~~~g--i~~~~~~~i~~~i~~i 133 (406)
T PF00474_consen 97 MIPYLAAQLVGGGALLSVLFG--IPYNTAILIVGVIVII 133 (406)
T ss_dssp HHTHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred hhhhhhccccccccchhhccc--hhhhHHHHHHHHHHHH
Confidence 555556678888888998998 8998888877654433
No 11
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.56 E-value=0.00043 Score=74.43 Aligned_cols=325 Identities=16% Similarity=0.136 Sum_probs=154.8
Q ss_pred HhhchHHHHHHhhcCCCchhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHhHhhhh--cCCCHHHHHHhhCCchHHHH
Q 009526 74 LFTGPGFLMSIAFLDPGNLEGDLQSGAVAGY-SLLWLLMWATVMGLLIQLLSARVGVA--TGRHLAELCREEYPNWARFV 150 (532)
Q Consensus 74 ~~lGPG~L~a~a~idpG~i~t~~qaGA~~Gy-~LLWvllla~i~~~~~Q~laaRlgvv--TGk~Lae~~r~~y~~~~~~~ 150 (532)
+.+|-.++++...+|+|=+.==.++|...=+ .+++.++.-.+|.+.-.. -+|.-.- .|.++-+..+|++||..+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~-l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALL-LLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 4578888888889999988877776653222 233322222223332222 3332222 46789999999999987776
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHH---hcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 009526 151 LWFMAEVALIGADIQEVIG-SAIAIQIL---SHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAW 226 (532)
Q Consensus 151 l~i~~~la~i~~di~eviG-~Aial~lL---~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~ 226 (532)
.|+...+.......+=..| ..+--|.+ ++-.+|.+.+.++..+....+++ .|.|..+|+..+++..|.++|+.
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~---~g~~~v~~~n~~L~~~~ii~~~~ 159 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVC---VGTSSVDLFNRFLFSAKIIFLVV 159 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHH
Confidence 6665433322222221122 11111222 23235666655544433222232 35589999999999999999987
Q ss_pred HHHhcCCChhhhhhccc-ccCCChhHHHHHHHHHcccchhHHH--H-HH---HHHhhhhcCCCCcccchHHhhhhHHHHH
Q 009526 227 MFGDTQPSGKELLVGVL-VPRLSSKTIRQAVGVVGCVIMPHNV--F-LH---SALVQSRNIDPKKKGRVQEALNYYSIES 299 (532)
Q Consensus 227 ~~~~~~P~~~~v~~G~~-vP~~~~~~l~~avaiiGatimP~~l--f-lh---S~lV~~r~~~~~~~~~~~~~l~~~~~Ds 299 (532)
.....-|+|.- ..+. .|.- .+.+..++ |-.+ | .| +++++..+.| + ++..|-..+-+
T Consensus 160 ~~~~l~p~~~~--~~L~~~~~~-~~~~~~~i--------Pvl~~SFgfh~iIpsl~~y~~~~---~---~~~~k~i~~Gs 222 (403)
T PRK15132 160 MLALMMPHIHK--VNLLTLPLQ-QGLALSAI--------PVIFTSFGFHGSVPSIVSYMGGN---I---RKLRWVFIIGS 222 (403)
T ss_pred HHHHHHHhcCH--HHHhcCCcc-ccHHHHHH--------HHHHHHhhCCcccHHHHHHhCcC---H---HHHHHHHHHHH
Confidence 76666676641 1111 1321 12222222 2222 1 22 3444332211 1 22223223333
Q ss_pred HHHHHHHHHHHH-HHHHHHhhhccCCCcccccCchhHHHHHHHhhcCChhHHHHHHHHHHHhhhchhhhhhhhhHHHHHh
Q 009526 300 SVALLVSFMINL-FLTTVFAKGFYGTKQANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAGQFIMG 378 (532)
Q Consensus 300 ~i~l~vs~lIn~-~i~~v~A~~~~~~~~~~~~~l~~a~~~L~~~~G~~~~~a~~ifaigLlaAg~sStit~t~ag~~v~~ 378 (532)
.+.+++-.+-.. ++..+.+..+.+. ..+..++.+.-+.++...+.+ +..++.-+=-+.|-.+|.+..+++-.--+.
T Consensus 223 ~i~li~yl~W~~~~lg~l~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~--~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~ 299 (403)
T PRK15132 223 AIPLVAYIFWQLATLGSIDSTTFMGL-LANHAGLNGLLQALREVVASP--HVELAVHLFADLALATSFLGVALGLFDYLA 299 (403)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHH-HHccCchHHHHHHHHHHccCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322221111 1111222222110 011223444556677766653 333322222223555666665655333334
Q ss_pred hhcCCcchhhHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 009526 379 GFLNLPMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVL 426 (532)
Q Consensus 379 gfl~~~~~~~~r~l~t~~iaivpal~v~~~~g~~~~~l~~l~~~~~vl 426 (532)
+.++++.++. .|..+..+..+|.++++.+. |..+.....++...
T Consensus 300 d~~~~~~~~~-~r~~~~~l~flppli~a~~~---P~~F~~al~~aG~~ 343 (403)
T PRK15132 300 DLFQRRNTVG-GRLQTGLITFLPPLAFALFY---PRGFVMALGYAGVA 343 (403)
T ss_pred HHHccCcccc-CCchhehhhHHHHHHHHHHh---HHHHHHHHHHHHHH
Confidence 4445443332 24455566778888877642 33355555555554
No 12
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.53 E-value=0.00062 Score=73.70 Aligned_cols=151 Identities=15% Similarity=0.067 Sum_probs=98.4
Q ss_pred HHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhc---CCCHHHHHHhhCCchHHHHHHHHHHH
Q 009526 81 LMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVAT---GRHLAELCREEYPNWARFVLWFMAEV 157 (532)
Q Consensus 81 L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvT---Gk~Lae~~r~~y~~~~~~~l~i~~~l 157 (532)
......+|+|=+.-=.++|...=+-++-.++++-++++.-..+-.|.-.-. |.+..+..+|++||..+.+.|+.-.+
T Consensus 27 ~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYff 106 (443)
T PRK13629 27 GLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFF 106 (443)
T ss_pred HHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHHH
Confidence 344457999988888888887777777777777777777777777776654 67899999999999777765554332
Q ss_pred H---HHHHH---HHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 009526 158 A---LIGAD---IQEVIGSAIAIQILSHG-VLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGD 230 (532)
Q Consensus 158 a---~i~~d---i~eviG~Aial~lL~gg-~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~~~~ 230 (532)
. ..... +++.+..-+ .|- .|. .+|.+...++..+. +..+-..|-|.++|++.+++..+.++|+...+.
T Consensus 107 ~ly~ll~aY~~~itn~l~sfl-~~q-l~~~~~~r~l~slifv~~---l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~ 181 (443)
T PRK13629 107 AICPLLWIYGVTITNTFMTFW-ENQ-LGFAPLNRGFVALFLLLL---MAFVIWFGKDLMVKVMSYLVWPFIASLVLISLS 181 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-Hhh-cCcCCccHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22111 222211111 111 231 35666554443322 222223456999999999999999999988888
Q ss_pred cCCChh
Q 009526 231 TQPSGK 236 (532)
Q Consensus 231 ~~P~~~ 236 (532)
.-|+|.
T Consensus 182 LiP~w~ 187 (443)
T PRK13629 182 LIPYWN 187 (443)
T ss_pred HHHHcC
Confidence 778775
No 13
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.42 E-value=0.0018 Score=71.22 Aligned_cols=118 Identities=18% Similarity=0.201 Sum_probs=70.6
Q ss_pred HHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHH-HHHHHhHhhhhc-----CCCHHHHHHhhCCch---HHHHHHH
Q 009526 83 SIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLL-IQLLSARVGVAT-----GRHLAELCREEYPNW---ARFVLWF 153 (532)
Q Consensus 83 a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~-~Q~laaRlgvvT-----Gk~Lae~~r~~y~~~---~~~~l~i 153 (532)
+++++....+........++|+.-.|...-..+..++ .-.++-|+-..+ -.+..|.+++||++. .+.+..+
T Consensus 48 ~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai 127 (487)
T TIGR02121 48 GASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISAL 127 (487)
T ss_pred HHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHH
Confidence 4455666666666667778888777775422221122 122344444333 246999999999853 3332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 009526 154 MAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLE 202 (532)
Q Consensus 154 ~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~ 202 (532)
+..+..+.....++.|.+..++.++| +|.+.+++++++.+.+...++
T Consensus 128 ~~~~~~~~~~~~~l~~~~~~l~~~~g--i~~~~~iii~~~i~~~Yt~~G 174 (487)
T TIGR02121 128 IILVFFTIYTSSGLVAGGKLFESTFG--LDYKTGLLIGALIIVIYTFFG 174 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHhh
Confidence 23333333344566788888888888 899999988877665544443
No 14
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.36 E-value=0.0084 Score=65.95 Aligned_cols=117 Identities=14% Similarity=0.214 Sum_probs=71.8
Q ss_pred HHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHH-HHHHHhHh---h-hhcCCCHHHHHHhhCCch-HHHHHHHHHH
Q 009526 83 SIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLL-IQLLSARV---G-VATGRHLAELCREEYPNW-ARFVLWFMAE 156 (532)
Q Consensus 83 a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~-~Q~laaRl---g-vvTGk~Lae~~r~~y~~~-~~~~l~i~~~ 156 (532)
.+++++.+......+...++|+...|......+..++ +..++.|+ + -.-..+..|..++||++. .++...+...
T Consensus 53 ~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ryg~~~~~~~~~i~~~ 132 (483)
T PRK09442 53 IATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARYQSRLLVWLASLSLL 132 (483)
T ss_pred HHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHhCChHHHHHHHHHHH
Confidence 3556788888888888888888755544322222211 11122222 1 123578999999999864 3443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 009526 157 VALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFL 201 (532)
Q Consensus 157 la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l 201 (532)
+..+.....+..|.+..++.++| +|.+.++++.++.+.+...+
T Consensus 133 ~~~~~~~~~ql~~~g~~l~~~~g--i~~~~~iii~~~iv~iYt~~ 175 (483)
T PRK09442 133 VFFFAAMTAQFIGGARLLETATG--ISYETGLLIFGITVALYTAF 175 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHh
Confidence 34444455677888888999988 99999888877654443333
No 15
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.29 E-value=0.0037 Score=67.39 Aligned_cols=325 Identities=13% Similarity=0.019 Sum_probs=154.6
Q ss_pred HhhchHHHHHHhhcCCCchhhh-hhhHHHhhHHHHHHHHH---HHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHH
Q 009526 74 LFTGPGFLMSIAFLDPGNLEGD-LQSGAVAGYSLLWLLMW---ATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARF 149 (532)
Q Consensus 74 ~~lGPG~L~a~a~idpG~i~t~-~qaGA~~Gy~LLWvlll---a~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 149 (532)
+.+|=.++++...+|.|=+.-- ..+|+-|-++.+-.++. .+.-++.+-|..-|.. .|.++....|+..||..++
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHHH
Confidence 4688777888888998866532 22333333332222211 1222334566666664 6888999999999997777
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHH---hcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 009526 150 VLWFMAEV---ALIGADIQEVIGSAIAIQIL---SHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALS 223 (532)
Q Consensus 150 ~l~i~~~l---a~i~~di~eviG~Aial~lL---~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~ 223 (532)
+.|+.... +...+.+.. |..+--+.+ .+.++|.+.+.++..+....+++. |.|.+|++..+++..|.++
T Consensus 88 i~~~~~~fl~Y~Ll~AYisg--gG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~---gt~~vd~~nr~l~~~~ii~ 162 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISA--NGAIISETISMNLGYHANPRIVGICTAIFVASVLWI---SSLAASRITSLFLGLKIIS 162 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhc--cHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHHH
Confidence 76664322 222222221 111111222 233467665444433322223333 4588888888999999999
Q ss_pred HHHHHHhcCC--ChhhhhhcccccCCCh-----hHHHHHHHHHcccchhHHHHHH---HHHhhhhcCCCCcccchHHhhh
Q 009526 224 FAWMFGDTQP--SGKELLVGVLVPRLSS-----KTIRQAVGVVGCVIMPHNVFLH---SALVQSRNIDPKKKGRVQEALN 293 (532)
Q Consensus 224 F~~~~~~~~P--~~~~v~~G~~vP~~~~-----~~l~~avaiiGatimP~~lflh---S~lV~~r~~~~~~~~~~~~~l~ 293 (532)
|+......-| ++..+.+. |.... ..+..++-++=+ .+-+| +++++..+.| .++-.|
T Consensus 163 f~~~~~~l~~~i~~~~L~~~---~~~~~~~~~~~~i~~alPVl~~-----SFgfh~iIPsl~~y~~~d------~~~~~k 228 (415)
T PRK09664 163 FVIVFGSFFFQVDYSILRDA---TSTTAGTSYFPYIFMALPVCLA-----SFGFHGNIPSLIICYGKR------KDKLIK 228 (415)
T ss_pred HHHHHHHHhhcccHHHHhcC---ccccccchHHHHHHHHHHHHHH-----hhhCCCcchHHHHHhCcc------HHHHHH
Confidence 9886665433 33322211 21111 112222222211 00122 3444332211 122333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCCcccccCchhHHHHHHHhhcCChhHHHHHHHHHHHhhhchhhhhhhhh
Q 009526 294 YYSIESSVALLVSFMINLFLTT-VFAKGFYGTKQANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYA 372 (532)
Q Consensus 294 ~~~~Ds~i~l~vs~lIn~~i~~-v~A~~~~~~~~~~~~~l~~a~~~L~~~~G~~~~~a~~ifaigLlaAg~sStit~t~a 372 (532)
...+-+.+.+++-++...+++. +....+.... .+..++.+..+.+....... +..++..+=.+.|-.+|.+..+++
T Consensus 229 aIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~-~~g~nv~~l~~s~~~~~~~~--~i~~~~~~Fa~~Ai~TSFlGv~LG 305 (415)
T PRK09664 229 SVVFGSLLALVIYLFWLYCTMGNIPRESFKAII-SSGGNVDSLVKSFLGTKQHG--IIEFCLLVFSNLAVASSFFGVTLG 305 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH-HcCCCchHHHHHHHhhccCh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666655555655554 1111110000 00112222222222222221 333333333334555666666665
Q ss_pred HHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Q 009526 373 GQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVL 426 (532)
Q Consensus 373 g~~v~~gfl~~~~~~~~r~l~t~~iaivpal~v~~~~g~~~~~l~~l~~~~~vl 426 (532)
-.-.+.+.++++.++ ..|..+..+..+|.+++++++ |......+.++...
T Consensus 306 L~D~l~D~~~~~~~~-~~r~~~~~ltflPPl~~al~~---P~gFl~AL~yAG~~ 355 (415)
T PRK09664 306 LFDYLADLFKIDNSH-GGRFKTVLLTFLPPALLYLIF---PNGFIYGIGGAGLC 355 (415)
T ss_pred HHHHHHHHhCCCCcc-ccceeeehhhHhhhHHHHHHh---hHHHHHHHHHHHHH
Confidence 333444555665433 345555666778888877654 22344455555554
No 16
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.29 E-value=0.003 Score=68.38 Aligned_cols=121 Identities=22% Similarity=0.315 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 009526 105 SLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPL 184 (532)
Q Consensus 105 ~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l~i~~~la~i~~di~eviG~Aial~lL~gg~ipl 184 (532)
+-++.+++.++++.++--..+-.|..||.+-...-|..+|++-.++.-+...+..++--.-+++=.+.+.+...+ +|.
T Consensus 53 ~si~aillG~llG~i~~A~~s~~Ga~~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~--~~~ 130 (442)
T COG1457 53 QSLLAILLGNLLGGIFMAYFSYQGARTGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTG--LPV 130 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCC--CcH
Confidence 347889999999999999999999999999999999999988765433322333333333343333333222233 899
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 009526 185 WAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGD 230 (532)
Q Consensus 185 ~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~~~~ 230 (532)
|+++++.++.+.+..+ +|||.++++-++.+-.+.+.|++....
T Consensus 131 ~~~ili~g~l~~l~~i---fG~r~l~~l~~~a~~~~~~lf~~l~~~ 173 (442)
T COG1457 131 WAGILIIGVLMTLVTI---FGYRALHKLERIAVPLLLLLFLYLLAL 173 (442)
T ss_pred HHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888866554333 466777777777777777777776554
No 17
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.23 E-value=0.0078 Score=67.38 Aligned_cols=121 Identities=14% Similarity=0.199 Sum_probs=82.6
Q ss_pred HHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHH--HHHHHhHhhhhcCCCHHHHHHhhCC-chHHHHHHHHH
Q 009526 79 GFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLL--IQLLSARVGVATGRHLAELCREEYP-NWARFVLWFMA 155 (532)
Q Consensus 79 G~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~--~Q~laaRlgvvTGk~Lae~~r~~y~-~~~~~~l~i~~ 155 (532)
|+-+++.+++..+.......+.++|++-+|..+ ....+++ .-.++-|+--..-.+..|.+++||+ |..+....+..
T Consensus 75 g~si~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~ 153 (549)
T TIGR02711 75 GLAIAGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGS 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHH
Confidence 444566778888888888888899999877553 3333321 1224555544445789999999996 55666544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 009526 156 EVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLE 202 (532)
Q Consensus 156 ~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~ 202 (532)
.+..+.....+..|.+..++.++| +|.+.++++.++.+.+...++
T Consensus 154 i~~~~~yl~~ql~g~g~il~~~~g--i~~~~~iii~~~i~~~Yt~~G 198 (549)
T TIGR02711 154 LVVVALYLIAQMVGAGKLIELLFG--LNYHVAVVLVGILMVMYVLFG 198 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhh
Confidence 444455555678888888999998 899999988887665554444
No 18
>PRK09395 actP acetate permease; Provisional
Probab=98.17 E-value=0.016 Score=64.92 Aligned_cols=121 Identities=16% Similarity=0.185 Sum_probs=82.8
Q ss_pred HHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHH--HHHHhHhhhhcCCCHHHHHHhhCC-chHHHHHHHHH
Q 009526 79 GFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLI--QLLSARVGVATGRHLAELCREEYP-NWARFVLWFMA 155 (532)
Q Consensus 79 G~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~--Q~laaRlgvvTGk~Lae~~r~~y~-~~~~~~l~i~~ 155 (532)
|+-+.+.++..++.......+..+|+.-.|..+- ..+++++ -.++.|+=-..-.+..|..++||+ |..+.+.-+..
T Consensus 77 ~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~-~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~ 155 (551)
T PRK09395 77 GLAIAGDYMSAASFLGISALVFTSGYDGLIYSIG-FLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGS 155 (551)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHH
Confidence 3445667788888888888888899887665442 2222211 223455544445789999999998 55666544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 009526 156 EVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLE 202 (532)
Q Consensus 156 ~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~ 202 (532)
.+..+.....+..|.+..++.++| +|.+.++++.++.+.+...++
T Consensus 156 iv~~~~yl~~q~~g~g~il~~~~g--i~~~~~ili~~~i~~iYt~~G 200 (551)
T PRK09395 156 LVVVALYLIAQMVGAGKLIQLLFG--LNYHVAVVLVGVLMMVYVLFG 200 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhhc
Confidence 445555556778888888998888 999999988887666554444
No 19
>PRK12488 acetate permease; Provisional
Probab=98.10 E-value=0.024 Score=63.56 Aligned_cols=121 Identities=14% Similarity=0.199 Sum_probs=84.4
Q ss_pred HHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHH--HHHHhHhhhhcCCCHHHHHHhhCC-chHHHHHHHHH
Q 009526 79 GFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLI--QLLSARVGVATGRHLAELCREEYP-NWARFVLWFMA 155 (532)
Q Consensus 79 G~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~--Q~laaRlgvvTGk~Lae~~r~~y~-~~~~~~l~i~~ 155 (532)
|+-+++.++...+.......+..+|++-+|..+ +...++++ -.++-|+=-..-.+..|.+.+||+ |+.+.+..+..
T Consensus 75 ~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~-g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~ 153 (549)
T PRK12488 75 GLAIAGDMISAASFLGISAMMFMNGYDGLLYAL-GVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGT 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHH-HHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHH
Confidence 455667788888888888888999999877654 23333322 234444433344789999999997 56777655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 009526 156 EVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLE 202 (532)
Q Consensus 156 ~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~ 202 (532)
.+..+.....++.|.+..++.++| +|.+.++++.++.+.+...++
T Consensus 154 i~~~~~yl~~q~~g~g~il~~l~g--i~~~~~iii~~~i~~~Yt~~G 198 (549)
T PRK12488 154 LTVVLMYLVAQMVGAGKLIELLFG--ISYLYAVVIVGALMVLYVTFG 198 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhcc
Confidence 555556666788889998999988 999999888877655544443
No 20
>PRK10483 tryptophan permease; Provisional
Probab=98.10 E-value=0.015 Score=62.91 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=89.3
Q ss_pred HhhchHHHHHHhhcCCCchhhh-hhhHHHhhHHHHHHHHHHHH---HHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHH
Q 009526 74 LFTGPGFLMSIAFLDPGNLEGD-LQSGAVAGYSLLWLLMWATV---MGLLIQLLSARVGVATGRHLAELCREEYPNWARF 149 (532)
Q Consensus 74 ~~lGPG~L~a~a~idpG~i~t~-~qaGA~~Gy~LLWvllla~i---~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 149 (532)
+.+|=.++++...+|.|=+.-- ..+|+-|.++++-.++.-.. -++.+-|..-|.. -|.++...-|+..||..++
T Consensus 12 ~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~LG~~g~~ 89 (414)
T PRK10483 12 SLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLLGKGWNV 89 (414)
T ss_pred cHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHHH
Confidence 3578888888888998876532 23344444443322222222 2334556666653 5778899999989997776
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHH--hcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 009526 150 VLWFMAEV---ALIGADIQEVIGSAIAIQIL--SHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSF 224 (532)
Q Consensus 150 ~l~i~~~l---a~i~~di~eviG~Aial~lL--~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F 224 (532)
+.|+...+ +...+.+.. |..+--+.+ .+.++|.+.+.++..+....+++. |.|..|++..+++..|.++|
T Consensus 90 i~~~s~lfl~Y~Ll~AYisg--~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~---gt~~vd~~n~~l~~~~i~~f 164 (414)
T PRK10483 90 VNGISIAFVLYILTYAYISA--SGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWL---STKAVSRMTAIVLGAKVITF 164 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhC--cHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHH
Confidence 65553322 222232221 111111222 233478888776665443334443 45889999999999999999
Q ss_pred HHHHHhcCC
Q 009526 225 AWMFGDTQP 233 (532)
Q Consensus 225 ~~~~~~~~P 233 (532)
+......-|
T Consensus 165 ~~~~~~l~~ 173 (414)
T PRK10483 165 FLTFGSLLG 173 (414)
T ss_pred HHHHHHHHh
Confidence 877655433
No 21
>PRK11375 allantoin permease; Provisional
Probab=98.02 E-value=0.042 Score=60.70 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchH
Q 009526 104 YSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWA 147 (532)
Q Consensus 104 y~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~ 147 (532)
++-++.+++++++..++-.+.++.|..||.+-.-.+|..||++-
T Consensus 60 ~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~G 103 (484)
T PRK11375 60 FSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRG 103 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHcccc
Confidence 35577888999999999999999999999999999999998654
No 22
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.00 E-value=0.0087 Score=64.40 Aligned_cols=125 Identities=14% Similarity=0.208 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHhH------hhhhc-CCCHHHHHHhhCCchHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q 009526 107 LWLLMWATVMGLLIQLLSAR------VGVAT-GRHLAELCREEYPNWARFVLWFMAEVAL------IGADIQEVIGSAIA 173 (532)
Q Consensus 107 LWvllla~i~~~~~Q~laaR------lgvvT-Gk~Lae~~r~~y~~~~~~~l~i~~~la~------i~~di~eviG~Aia 173 (532)
.|..+++.+..+++....+| +.--. |+++.|..++++||+.+.+.++.-.+.. .+..+.+..+.-+-
T Consensus 33 ~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~ 112 (397)
T TIGR00814 33 LWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLV 112 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666566655 34444 7899999999999988766544322211 11112222222111
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 009526 174 IQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTQPSG 235 (532)
Q Consensus 174 l~lL~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~~~~~~P~~ 235 (532)
+ ..+.+.|.+... ..+...++....+.|.|.+.|+..+++..+.+.++...+..-|.|
T Consensus 113 -~-~~~~~~p~~~i~--~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~ 170 (397)
T TIGR00814 113 -N-QLGTAPPLRGLL--SLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHW 170 (397)
T ss_pred -H-hcCCCCcHHHHH--HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1 112123444211 111122223444568899999999988887777777666655544
No 23
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=97.96 E-value=0.0072 Score=64.03 Aligned_cols=72 Identities=17% Similarity=0.049 Sum_probs=40.2
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHhhhchhhhhhhhhHHHHHhhhcCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 009526 335 AGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLPMKKWLRALITRSCAIVPTMIVALIF 409 (532)
Q Consensus 335 a~~~L~~~~G~~~~~a~~ifaigLlaAg~sStit~t~ag~~v~~gfl~~~~~~~~r~l~t~~iaivpal~v~~~~ 409 (532)
..+.++..+|.+ +...+..++.+.|-.+|.+...++..-..++.++++.++ .+|.....+..+|.++++.+.
T Consensus 255 l~~~~~~~~~~~--~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~-~~~~~~~~~~~~~pl~~a~~~ 326 (381)
T TIGR00837 255 LVNALQGVLKSS--AIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK-KGRFKTGLLTFLPPLVFALFY 326 (381)
T ss_pred HHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCchhhhhhHHhHHHHHHHh
Confidence 344566667653 455666777777777777766665433344444543222 223344455567777766544
No 24
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.96 E-value=0.0061 Score=65.67 Aligned_cols=272 Identities=14% Similarity=0.177 Sum_probs=144.0
Q ss_pred HhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCC---------HHHHHHhhCC-chHHHHHHH
Q 009526 84 IAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRH---------LAELCREEYP-NWARFVLWF 153 (532)
Q Consensus 84 ~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~---------Lae~~r~~y~-~~~~~~l~i 153 (532)
++-+|+||++.-..|=+.=|-.-+..+.++.+++....+.-.-+++..++. ..--+++-.+ ||...+.-+
T Consensus 30 a~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~la~~fai 109 (416)
T PF01235_consen 30 AGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKWLAILFAI 109 (416)
T ss_pred HhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccchHHHHHHH
Confidence 446999999988888777787777777777777777777777777665432 4444555454 343332212
Q ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 009526 154 MAEVALIGA--DIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDT 231 (532)
Q Consensus 154 ~~~la~i~~--di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~~~~~ 231 (532)
. .+...+. ...+.--++.+++--++ +|.|...++.++.+.+ ..+ .|.|++-++...++=+|++.|+...+..
T Consensus 110 ~-~~~~~~~~~~~~Q~nsi~~~~~~~f~--i~~~~~gi~l~~l~~~-vi~--GGikrI~~v~~~lVP~Ma~~Yi~~~l~i 183 (416)
T PF01235_consen 110 F-LIIAFGIGFNMVQANSIADALSSAFG--IPPWITGIILAILVAL-VIF--GGIKRIAKVSEKLVPFMAILYILGGLII 183 (416)
T ss_pred H-HHHHHHhhhhHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHH-HHH--cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111 11222233445555566 7777655444433322 222 4679999999999999999998765432
Q ss_pred ---CCC-h----hhhhhcccccCCChhHHHHHHHHHcccchhHHH-------HHH------HHHhhh-hcCCCCcccchH
Q 009526 232 ---QPS-G----KELLVGVLVPRLSSKTIRQAVGVVGCVIMPHNV-------FLH------SALVQS-RNIDPKKKGRVQ 289 (532)
Q Consensus 232 ---~P~-~----~~v~~G~~vP~~~~~~l~~avaiiGatimP~~l-------flh------S~lV~~-r~~~~~~~~~~~ 289 (532)
|.+ . .++.++.|-|+- ..=|.+|++++--.- |-+ +...++ .+.| +..|
T Consensus 184 i~~n~~~ip~~~~~If~~AF~~~a------a~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~----hP~~ 253 (416)
T PF01235_consen 184 IIINIDQIPAAFSLIFSSAFTPKA------AFGGFAGSTIMMAIRQGVARGLFSNEAGLGSAPIAHAAAETD----HPVR 253 (416)
T ss_pred HHhhhhhHHHHHHHHHHHHcCCcc------chhhHHHHHHHHHHHHhhhhhhccCCCCCChhHHHHHHhcCC----CcHH
Confidence 322 2 344555555542 123455555532111 110 000000 0111 1122
Q ss_pred Hhhh---hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccccCchhHHHHHHHhhcCChhHHHHHHHHHHHhhhchhh
Q 009526 290 EALN---YYSIESSVALLVSFMINLFLTTVFAKGFYGTKQANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSST 366 (532)
Q Consensus 290 ~~l~---~~~~Ds~i~l~vs~lIn~~i~~v~A~~~~~~~~~~~~~l~~a~~~L~~~~G~~~~~a~~ifaigLlaAg~sSt 366 (532)
+.+- .-.+|+.+ ++.+-.+.++..+. .+..+ +..+.+-..++++..+|. +..++..+.++.-++||.
T Consensus 254 QGl~~~~~vFiDTii---VCt~TalvIl~tG~--~~~~~--~~~g~~l~~~Af~~~~g~---~g~~~v~i~l~lFafTTi 323 (416)
T PF01235_consen 254 QGLVQMFEVFIDTII---VCTITALVILVTGV--WSWGS--GLEGAALTQAAFSTVLGS---WGPYFVAIALFLFAFTTI 323 (416)
T ss_pred HeeeeeehHhHHHHH---HHHHHHHHhhccCC--CCCCC--cchHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHH
Confidence 2211 11233322 22222222222221 11111 111122235678888887 888999999999999999
Q ss_pred hhhhhhHHHHHhhhc
Q 009526 367 ITGTYAGQFIMGGFL 381 (532)
Q Consensus 367 it~t~ag~~v~~gfl 381 (532)
++..|-++...+=.+
T Consensus 324 lg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 324 LGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHc
Confidence 998887766665555
No 25
>TIGR00930 2a30 K-Cl cotransporter.
Probab=97.94 E-value=0.097 Score=62.37 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhhchhhhhhhhhHHHHH
Q 009526 351 LYIWGIGLLAAGQSSTITGTYAGQFIM 377 (532)
Q Consensus 351 ~~ifaigLlaAg~sStit~t~ag~~v~ 377 (532)
..+..+|.+.+.++|.++..++...++
T Consensus 387 ~~lI~ig~~~stlss~la~l~~asRvl 413 (953)
T TIGR00930 387 PPLITAGIFSATLSSALASLVSAPRLF 413 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999988887776655444
No 26
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.93 E-value=0.051 Score=58.68 Aligned_cols=265 Identities=21% Similarity=0.226 Sum_probs=124.3
Q ss_pred HHHHHHh--hcCCCch-----hhhhhhHHHhhHHHHHHHH--HHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCC-chHH
Q 009526 79 GFLMSIA--FLDPGNL-----EGDLQSGAVAGYSLLWLLM--WATVMGLLIQLLSARVGVATGRHLAELCREEYP-NWAR 148 (532)
Q Consensus 79 G~L~a~a--~idpG~i-----~t~~qaGA~~Gy~LLWvll--la~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~-~~~~ 148 (532)
||+++++ .+|-||+ .++...|+.|= +++.+. +.-+...+.+.. +|--++++.-+..|+.-| |++.
T Consensus 13 GFILAa~GsAVGLGNiWrFPy~~~~nGGgAFl--l~yli~~l~~GiPlli~Ef~---iGr~~~~~~~~a~~~l~~~~~~~ 87 (439)
T COG0733 13 GFILAAAGSAVGLGNIWRFPYMAGENGGGAFL--LPYLIFLLLVGIPLLLAEFA---IGRRGRKNAVGAFRKLAPKKKWE 87 (439)
T ss_pred HHHHHHHHHHhcccccccCCeEeeecCcchHH--HHHHHHHHHHhHHHHHHHHH---hhhhcCCChhHHHHHhccCccch
Confidence 5565554 6999997 34555555543 333322 222333344444 566688888888888664 5445
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHH----------------HHHHhcCCcc-hHHHHHHHHHHHHHHHHHhhcchhH-H
Q 009526 149 FVLWFMAEVA-LIGADIQEVIGSAIA----------------IQILSHGVLP-LWAGVIITALDCFIFLFLENYGVRK-L 209 (532)
Q Consensus 149 ~~l~i~~~la-~i~~di~eviG~Aia----------------l~lL~gg~ip-l~~gvlit~~~~~~~l~l~~yg~r~-l 209 (532)
+.-|...... ++.+-=.-++|=.+. ..-.|...+. .+..+.-+.+.-.+-.++-+.|.++ +
T Consensus 88 ~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GI 167 (439)
T COG0733 88 WIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGI 167 (439)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhH
Confidence 5444422111 111111111111110 0001110011 1211111111111112223445555 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh--cCCChhhhhhcccccCCC----hhHHHHHHHH------HcccchhHHHHHHHHHhhh
Q 009526 210 EAVFAVLIATMALSFAWMFGD--TQPSGKELLVGVLVPRLS----SKTIRQAVGV------VGCVIMPHNVFLHSALVQS 277 (532)
Q Consensus 210 E~~~~~Lv~~m~l~F~~~~~~--~~P~~~~v~~G~~vP~~~----~~~l~~avai------iGatimP~~lflhS~lV~~ 277 (532)
||..++++=.+.++|+..++. +.|...|=.+=++.|..+ .+.+..+.|- +|..+ ++-+.|++-
T Consensus 168 Ek~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~---mitYsSYL~-- 242 (439)
T COG0733 168 EKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGI---MITYSSYLS-- 242 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHH---HHHHHhhcC--
Confidence 999999988888888877765 366655555555667643 1222222221 12211 222334432
Q ss_pred hcCCCCcccchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccccC-----chhHHHHHHHhhcCChhHHHH
Q 009526 278 RNIDPKKKGRVQEALNYYSIESSVALLVSFMINLFLTTVFAKGFYGTKQANSIG-----LVNAGQYLQEKYGGGYLPILY 352 (532)
Q Consensus 278 r~~~~~~~~~~~~~l~~~~~Ds~i~l~vs~lIn~~i~~v~A~~~~~~~~~~~~~-----l~~a~~~L~~~~G~~~~~a~~ 352 (532)
|+. +..+.+......|+.++++..+.|--+....+.. ..+..+ +.++-+.+. +|+ .-..
T Consensus 243 k~~-----~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~------~~~GpgL~Fi~LP~if~~mp--~G~---~~~~ 306 (439)
T COG0733 243 KKS-----DLVSSALSIVLLNTLISLLAGLVIFPALFSFGAD------ASQGPGLVFIVLPAVFNQMP--LGT---LFGI 306 (439)
T ss_pred ccc-----chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCCCCeeehhHHHHHHHhCc--hhH---HHHH
Confidence 221 2345566666777777666654433222222111 111122 122223332 555 4456
Q ss_pred HHHHHHHhhhchhhhhh
Q 009526 353 IWGIGLLAAGQSSTITG 369 (532)
Q Consensus 353 ifaigLlaAg~sStit~ 369 (532)
+|-+.++.|+.||++.-
T Consensus 307 lFFl~l~fAalTS~iSm 323 (439)
T COG0733 307 LFFLLLLFAALTSAISM 323 (439)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888899999887643
No 27
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.91 E-value=0.057 Score=59.78 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=77.9
Q ss_pred hchHHH-HHHhhcCCCchhhhhhhHHHh--hHHHHHHHHHHHH-HHHHHHHHHhHhhhhc----CCCHHHHHHhhCC-ch
Q 009526 76 TGPGFL-MSIAFLDPGNLEGDLQSGAVA--GYSLLWLLMWATV-MGLLIQLLSARVGVAT----GRHLAELCREEYP-NW 146 (532)
Q Consensus 76 lGPG~L-~a~a~idpG~i~t~~qaGA~~--Gy~LLWvllla~i-~~~~~Q~laaRlgvvT----Gk~Lae~~r~~y~-~~ 146 (532)
+||... ++++.-|-+.++---..|..| |+.-+|.....++ .-...-..+-|+=..+ -.++.|..++||+ ++
T Consensus 40 lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~ 119 (493)
T COG0591 40 LGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKI 119 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChH
Confidence 455422 233344555454444455555 9999998877533 3333344455555555 5679999999999 77
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 009526 147 ARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFL 201 (532)
Q Consensus 147 ~~~~l~i~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l 201 (532)
.+.+.-+...+..+.-...++.|.+..++..+| +|.+.+..+.+..+.+.-++
T Consensus 120 lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--i~~~~~~~~~~~~v~~Yt~~ 172 (493)
T COG0591 120 LRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--ISYVTGILIGALIVALYTFL 172 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--CCHHHHHHHHHHHHHHHHHH
Confidence 776554444455555555567788888888888 89888887766555544444
No 28
>PRK10249 phenylalanine transporter; Provisional
Probab=97.77 E-value=0.099 Score=57.09 Aligned_cols=106 Identities=18% Similarity=0.254 Sum_probs=49.6
Q ss_pred hchHHHHHHh-hcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHHH-HH
Q 009526 76 TGPGFLMSIA-FLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVL-WF 153 (532)
Q Consensus 76 lGPG~L~a~a-~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l-~i 153 (532)
++=|-.+..+ ++.||...+..-.++-.+|-+ .-++....++.+.|++.|+=. +| +.....++.+|++..+.. |.
T Consensus 31 i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li--~~~~~~~~~~~~aEl~~~~P~-~G-g~~~y~~~~~g~~~gf~~gw~ 106 (458)
T PRK10249 31 IALGGAIGTGLFLGIGPAIQMAGPAVLLGYGV--AGIIAFLIMRQLGEMVVEEPV-SG-SFAHFAYKYWGPFAGFLSGWN 106 (458)
T ss_pred hhhhcccchhHHHHHHHHHHhcCcHHHHHHHH--HHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhChHHHHHHHHH
Confidence 3333333333 466666554322222222211 122334455556666666554 45 677788888998665432 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHH
Q 009526 154 MAEVALIGADIQEVIGSAIAIQILSHGVLPLWAG 187 (532)
Q Consensus 154 ~~~la~i~~di~eviG~Aial~lL~gg~ipl~~g 187 (532)
. -+........|..+.+.-++.+++. .|.|..
T Consensus 107 ~-~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 138 (458)
T PRK10249 107 Y-WVMFVLVGMAELTAAGIYMQYWFPD-VPTWIW 138 (458)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHcCCc-CcHHHH
Confidence 1 1111222234554444444444442 565543
No 29
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.74 E-value=0.023 Score=58.99 Aligned_cols=146 Identities=16% Similarity=0.227 Sum_probs=95.6
Q ss_pred HHHHHHhhchHHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhh-cCCCHHHHHHhhCCchH
Q 009526 69 WKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVA-TGRHLAELCREEYPNWA 147 (532)
Q Consensus 69 ~~~l~~~lGPG~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvv-TGk~Lae~~r~~y~~~~ 147 (532)
.|..++++| -++.+++--.=++ .|-=..||+.=.|-+.+++++-.++-.....+|-. .-+|..|..+.-.|++.
T Consensus 6 ~~~~f~~ig--~~vGAGfAsGqEi---~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~ 80 (349)
T COG3949 6 MRWAFAFIG--TVVGAGFASGQEI---MQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKF 80 (349)
T ss_pred HHHHHHHHH--HhhcccccchHHH---HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHH
Confidence 344555655 3333333222222 23335688888999999999888877777777766 55667788877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 009526 148 RFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALS 223 (532)
Q Consensus 148 ~~~l~i~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~ 223 (532)
....=++..+..+.+..-+..|.+..++-.+| +|.|+|.++......+.++++| .++++++...++=++.++
T Consensus 81 ~ki~d~~iif~lf~~~vVM~AGags~~~e~~~--lP~wiGali~i~~v~i~lfl~~--vegi~tvn~iI~P~LIi~ 152 (349)
T COG3949 81 AKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG--LPYWIGALIIILLVLILLFLGR--VEGIITVNGIITPFLIII 152 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHhC--ccHHHHHHHHHHHHHHHHHHhc--ccceeeeheeHHHHHHHH
Confidence 55544444555566666667777767777788 9999997777766666666665 377777766644444333
No 30
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.68 E-value=0.13 Score=55.92 Aligned_cols=47 Identities=15% Similarity=0.365 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHH
Q 009526 104 YSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFV 150 (532)
Q Consensus 104 y~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 150 (532)
++-++.+++++++..++--+.++.|..||.+-....|..||++-..+
T Consensus 47 ~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v~sR~~FG~~Gs~~ 93 (442)
T TIGR00800 47 WQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPVLSRASFGIYGSLL 93 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcchhhhhhhhhhHhHH
Confidence 45677888999999999999999999999999999999999765543
No 31
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.56 E-value=0.2 Score=54.92 Aligned_cols=61 Identities=10% Similarity=0.170 Sum_probs=29.3
Q ss_pred hcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHH
Q 009526 86 FLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFV 150 (532)
Q Consensus 86 ~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 150 (532)
++.||......-.++-++|-+..++.+. ....+-|++...+. .| +..+..++.||+...+.
T Consensus 41 f~~~g~~~~~aGp~~i~~~~i~~i~~~~--~~~s~aEl~s~~~~-~~-~~~~ya~~~~g~~~gf~ 101 (469)
T PRK11049 41 FMGSGKTISLAGPSIIFVYMIIGFMLFF--VMRAMGELLLSNLE-YK-SFSDFASDLLGPWAGYF 101 (469)
T ss_pred HHHhhHHHhhcCcHHHHHHHHHHHHHHH--HHHHHHHHHHhcCC-CC-cHHHHHHHHhCcHHHHH
Confidence 4556655544322333333333332222 22334455543222 23 46677788899876554
No 32
>PRK10484 putative transporter; Provisional
Probab=97.54 E-value=0.24 Score=55.20 Aligned_cols=70 Identities=16% Similarity=0.141 Sum_probs=41.6
Q ss_pred HHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHH-HHHHHHhHhhhhcCCCHHHHHHhhCCchHHHH
Q 009526 81 LMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGL-LIQLLSARVGVATGRHLAELCREEYPNWARFV 150 (532)
Q Consensus 81 L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~-~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 150 (532)
=+.++++..++.......+.++|+.-+|..+...+..+ ..-..+.|+--.-=.+..|..++||++..+..
T Consensus 48 sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~~ 118 (523)
T PRK10484 48 SLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRI 118 (523)
T ss_pred HHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHHH
Confidence 34455788888888888888888876532222222111 11122444332223579999999999765543
No 33
>PRK11017 codB cytosine permease; Provisional
Probab=97.48 E-value=0.23 Score=53.57 Aligned_cols=117 Identities=12% Similarity=0.146 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCcc
Q 009526 105 SLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEV-ALIGADIQEVIGSAIAIQILSHGVLP 183 (532)
Q Consensus 105 ~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l~i~~~l-a~i~~di~eviG~Aial~lL~gg~ip 183 (532)
+-++.+++++++..++--+.++.|..||.+-...+|..||++-..+..++-.+ ++.=.-++..++ +.+++-++| ++
T Consensus 43 ~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~-~~~l~~~~~--~~ 119 (404)
T PRK11017 43 DFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMF-AIPVVKATG--LD 119 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhC--CC
Confidence 45678888889999999999999999999999999999997654432222111 111112222222 233444556 56
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 009526 184 LWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWM 227 (532)
Q Consensus 184 l~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~ 227 (532)
.+.+.++..+......+ +|+|++|++.++..-.+.+.+++.
T Consensus 120 ~~~~~~i~~~l~~~~~~---~G~~~i~~~~~~~~p~~~~~~~~~ 160 (404)
T PRK11017 120 INLLIVLSGLLMTVTAY---FGISALTILSRIAVPAIALLGGYS 160 (404)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444433333333 344666666555544444444443
No 34
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.47 E-value=0.3 Score=54.75 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=79.3
Q ss_pred HHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHH----HHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCC-chHHHHHHH
Q 009526 79 GFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMW----ATVMGLLIQLLSARVGVATGRHLAELCREEYP-NWARFVLWF 153 (532)
Q Consensus 79 G~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvlll----a~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~-~~~~~~l~i 153 (532)
|+-+.+.++...........+.++|++-+|..+- ..++.+++-..--|.+. .+..|...+||+ |..++...+
T Consensus 40 ~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~---~T~~e~l~~Rf~s~~~~~~~~i 116 (552)
T TIGR03648 40 GMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK---YTVPDFIGDRYYSNTARLVAVI 116 (552)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---ccHHHHHHHHhCCCceehhHHH
Confidence 3445566777777777777888889887766531 12244455555556654 489999999998 444554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHh
Q 009526 154 MAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLE 202 (532)
Q Consensus 154 ~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~ 202 (532)
...+..+.....++.|.+..++.++| +|.+.++++.++.+.+...++
T Consensus 117 ~~~~~~~~~l~~ql~~~~~~l~~~~g--i~~~~~iii~~~i~~iYt~~G 163 (552)
T TIGR03648 117 CAIFISFTYVAGQMRGVGVVFSRFLE--VDFETGVFIGMAIVFFYAVLG 163 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhh
Confidence 44444455555567788889999988 999999988877655444443
No 35
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.39 E-value=0.32 Score=53.12 Aligned_cols=146 Identities=14% Similarity=0.177 Sum_probs=67.8
Q ss_pred CcccHHHHHHhhchHHHHHHh-hcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhC
Q 009526 65 PPFSWKKLWLFTGPGFLMSIA-FLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEY 143 (532)
Q Consensus 65 ~~~~~~~l~~~lGPG~L~a~a-~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y 143 (532)
+..+.|+... ++=|=.+..+ ++.||...++.-.++-++|-+. -+.....+.-+-|++.|+=. +| +..+-.++.+
T Consensus 12 r~L~~~~~~~-i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~--gi~~~~v~~s~aEl~s~~P~-aG-g~y~~~~~~~ 86 (456)
T PRK10238 12 RGLKNRHIQL-IALGGAIGTGLFLGSASVIQSAGPGIILGYAIA--GFIAFLIMRQLGEMVVEEPV-AG-SFSHFAYKYW 86 (456)
T ss_pred ccCcHHHHHH-HHhhccccchHHHhhHHHHHhcCcHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC-CC-CHHHHHHHHc
Confidence 4444555433 3333333332 4667776665433333333222 22333344455677777664 34 6667777888
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 009526 144 PNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVL 216 (532)
Q Consensus 144 ~~~~~~~l~i~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~L 216 (532)
|++..+...-..-+..+.....|..+.+.-++..++ ..|.|...++..+....+-..+..-+.++|.++..+
T Consensus 87 g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~i 158 (456)
T PRK10238 87 GSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP-EIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAII 158 (456)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 987655432111122222223444444444555554 267776554443322222222212245677765443
No 36
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.34 E-value=0.32 Score=52.15 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh----
Q 009526 104 YSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMAEVALIG-ADIQEVIGSAIAIQILS---- 178 (532)
Q Consensus 104 y~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l~i~~~la~i~-~di~eviG~Aial~lL~---- 178 (532)
++-+..+++++++..+..-+.++.|..||.+-.-..|..||++-..+.-++-.+..++ .-+|-..| +.+++.+.
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~g-g~~l~~~~~~~~ 107 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVG-AKAASLLGGRLF 107 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc
Confidence 5667888899999999999999999999999999999999976554322221111111 11222222 22233332
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 009526 179 HGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMF 228 (532)
Q Consensus 179 gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~~ 228 (532)
|. .+...+..+.++. .....-+|+|+++++..+.+-++.+.+++..
T Consensus 108 ~~-~~~~~~~~i~~~l---~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~ 153 (386)
T TIGR02358 108 GE-ESPMLWILIVGIL---VTLWLLSGPLAFVWLNNWSVWLLLIATLWLL 153 (386)
T ss_pred CC-CchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1233333333322 2222235667777777776666666665544
No 37
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.33 E-value=0.33 Score=52.05 Aligned_cols=68 Identities=15% Similarity=0.043 Sum_probs=43.8
Q ss_pred HHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHHH
Q 009526 83 SIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVL 151 (532)
Q Consensus 83 a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l 151 (532)
=.-+.|.||+..-..-|.+.|.+..+.++--.+-++.+=.++----..+| +--+..++++||+...++
T Consensus 5 FamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~av~~~g-G~~~~l~~~~g~~f~~lf 72 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIALALVG-GGYDSLSARIGKVFGILF 72 (378)
T ss_pred HHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHheeeecC-CCHHHHHHHhChHHHHHH
Confidence 34589999999999999998877666555444444433333322222245 455667777999877665
No 38
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.32 E-value=0.37 Score=52.38 Aligned_cols=275 Identities=15% Similarity=0.144 Sum_probs=127.6
Q ss_pred HHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHH----HHHHHHHHHhHhhhhcCCC-H----HHHHHhhC-CchHHHHHH
Q 009526 83 SIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATV----MGLLIQLLSARVGVATGRH-L----AELCREEY-PNWARFVLW 152 (532)
Q Consensus 83 a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i----~~~~~Q~laaRlgvvTGk~-L----ae~~r~~y-~~~~~~~l~ 152 (532)
-++-+|.||+..-..+=+.-|.+-+..+.++.+ .++.--.++-|+-...+++ . ..-+++.. +||...++-
T Consensus 57 la~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~gl~~k~lg~lfa 136 (425)
T TIGR00835 57 LAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKKGLGMRWLAVLFA 136 (425)
T ss_pred HHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHHHhCccHHHHHHH
Confidence 345688888887777733344444333334444 4444444444444323333 2 23344444 466554322
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 009526 153 FMAEVAL--IGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGD 230 (532)
Q Consensus 153 i~~~la~--i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~~~~ 230 (532)
+. .+.. ++...| .-..+-.++-.++ +|.|...++.++.+.. +. ..|.|++-++...++-+|.+.|+...+.
T Consensus 137 ~~-~i~~f~~~~~~Q-~nsi~~~~~~~~~--~~~~v~~i~l~~l~~~-vi--~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ 209 (425)
T TIGR00835 137 VF-LIASFGIGNMVQ-ANAIASALSNAFN--VPKLVTGIVLTVLTAL-II--FGGLKRIAKISSVVVPFMALLYVIMALY 209 (425)
T ss_pred HH-HHHHHhhhHHHH-HHHHHHHHHHHcC--CcHHHHHHHHHHHHHH-HH--hcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1111 111111 1122223332345 7877755444433322 22 2477999999999988988888544332
Q ss_pred c---C-----CChhhhhhcccccCCChhHHHHHHHHHcccchhHH-------HHHH-----HH-Hhh-hhcCCCCcccch
Q 009526 231 T---Q-----PSGKELLVGVLVPRLSSKTIRQAVGVVGCVIMPHN-------VFLH-----SA-LVQ-SRNIDPKKKGRV 288 (532)
Q Consensus 231 ~---~-----P~~~~v~~G~~vP~~~~~~l~~avaiiGatimP~~-------lflh-----S~-lV~-~r~~~~~~~~~~ 288 (532)
. + |-...+.++.|-|+- .+=|.+|++++--. +|-+ |+ ..+ +.+.| +..
T Consensus 210 ii~~n~~~lp~~~~~If~~AF~~~a------~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~----hP~ 279 (425)
T TIGR00835 210 IIIMNIEQLPAVISLIFRSAFGGDA------AAGGFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAAAAAQVS----HPV 279 (425)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCchh------hHhHHHHHHHHHHHHHhhHHHHhccccccCcHHHHHHHhcCC----CcH
Confidence 1 2 233445555544441 12334554432211 1111 00 000 11111 112
Q ss_pred HHhhh---hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccccCchhHHHHHHHhhcCChhHHHHHHHHHHHhhhchh
Q 009526 289 QEALN---YYSIESSVALLVSFMINLFLTTVFAKGFYGTKQANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSS 365 (532)
Q Consensus 289 ~~~l~---~~~~Ds~i~l~vs~lIn~~i~~v~A~~~~~~~~~~~~~l~~a~~~L~~~~G~~~~~a~~ifaigLlaAg~sS 365 (532)
|+.+- .-.+|+.+-..++ .+.+++. +.|+... +..+.+-..++++..+|. |..++..+.++.-++||
T Consensus 280 ~QGl~~~~~vfiDTivvCt~T---alvil~t---g~~~~~~-~~~g~~lt~~af~~~~g~---~g~~~v~i~~~lFaftT 349 (425)
T TIGR00835 280 RQGLVQMLGVFIDTMIVCTAT---ALVILLS---GVWNNGE-GLSGAQLTQQALSYGLGS---FGAVFVAVALFLFAFST 349 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHc---CccCCCC-CCcHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHH
Confidence 22221 1122332211111 1112221 2232110 001111123567777887 78899999999999999
Q ss_pred hhhhhhhHHHHHhhhcCCc
Q 009526 366 TITGTYAGQFIMGGFLNLP 384 (532)
Q Consensus 366 tit~t~ag~~v~~gfl~~~ 384 (532)
.++..|-++...+=+++.|
T Consensus 350 ii~~~yyge~~~~yl~~~~ 368 (425)
T TIGR00835 350 IIGWYYYGEKNAEFLKGNK 368 (425)
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 9988877665555444544
No 39
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.31 E-value=0.31 Score=53.40 Aligned_cols=41 Identities=12% Similarity=0.173 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhcCcc--ccCCCCChHHHHHHHHHHHHHHH
Q 009526 429 IQIPFALIPLLTLVSKEQ--VMGVFRIGPVLERLAWTVAALVM 469 (532)
Q Consensus 429 ~~LPfalipll~l~n~k~--iMG~~~~~~~~~il~~i~~~~i~ 469 (532)
..++.++....++..+|+ .-++|+.+++...+.++..+.+.
T Consensus 392 ~~i~y~~~~~~~l~~~~~~~~~~~f~lg~~~~~~~~~~~~~~~ 434 (482)
T TIGR00907 392 LDVSYVIPIICKLAKGRNTIAPGPFWLGKYGFFVNAVAVAWTV 434 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCcCCcchHHHHHHHHHHHH
Confidence 445555555555544443 34467776655544444433333
No 40
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.21 E-value=0.078 Score=57.40 Aligned_cols=63 Identities=13% Similarity=0.234 Sum_probs=42.3
Q ss_pred cCCCchhhhhhhHHHhh---HHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHH
Q 009526 87 LDPGNLEGDLQSGAVAG---YSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFV 150 (532)
Q Consensus 87 idpG~i~t~~qaGA~~G---y~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 150 (532)
+-+.++.+-... ..+| .+-+..+++++++..++--+.++.|.-||.+-....|..||.+.+.+
T Consensus 23 ~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~FG~~Gs~l 88 (440)
T PF02133_consen 23 ISIATFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRASFGYRGSKL 88 (440)
T ss_dssp -SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTTS-TTTTHH
T ss_pred HHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhccCcchHHH
Confidence 344444444433 3444 34567888999999999999999999999999999999999765543
No 41
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.19 E-value=0.52 Score=51.58 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=31.7
Q ss_pred hcCCCchhhhhh-hHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHH
Q 009526 86 FLDPGNLEGDLQ-SGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARF 149 (532)
Q Consensus 86 ~idpG~i~t~~q-aGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 149 (532)
+..||......- +|.-++|-+.-+ +.....+.+-|++.++=. +| +.-+-.++.+|+...+
T Consensus 35 f~~~g~~~~~~G~~~~~l~~~i~~~--~~~~~~~~~aELas~~P~-aG-G~y~y~~~~~g~~~gf 95 (471)
T PRK11387 35 FFNTGYIISTTGAAGTLLAYLIGAL--VVYLVMQCLGELSVAMPE-TG-AFHVYAARYLGPATGY 95 (471)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC-CC-CHHHHHHHhcChHHHH
Confidence 455565554433 133334333322 223334445678877764 33 4667778888886554
No 42
>PRK15049 L-asparagine permease; Provisional
Probab=97.11 E-value=0.67 Score=51.34 Aligned_cols=69 Identities=14% Similarity=0.077 Sum_probs=35.8
Q ss_pred chHHHHHHh-hcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHH
Q 009526 77 GPGFLMSIA-FLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARF 149 (532)
Q Consensus 77 GPG~L~a~a-~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 149 (532)
+=|-.+..+ ++.||......-.++-.+|- ..-++..+.+..+-|++.++=. +| +...-.++.+|++..+
T Consensus 39 ~~G~~IGsGiF~~~g~~~~~aGp~~il~~l--i~~i~~~~v~~slaELas~~P~-aG-g~y~y~~~~~G~~~gf 108 (499)
T PRK15049 39 AIGGAIGTGLFLGAGARLQMAGPALALVYL--ICGLFSFFILRALGELVLHRPS-SG-SFVSYAREFLGEKAAY 108 (499)
T ss_pred hhhccccchHHHhhHHHHHhcCCHHHHHHH--HHHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhCcHhHH
Confidence 333333333 45666655444333333332 2223344444555677766653 34 6677778878886544
No 43
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.08 E-value=0.71 Score=51.23 Aligned_cols=49 Identities=16% Similarity=0.283 Sum_probs=30.0
Q ss_pred HHhhHHHHHHHHHHH-----HHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHH
Q 009526 100 AVAGYSLLWLLMWAT-----VMGLLIQLLSARVGVATGRHLAELCREEYPNWARF 149 (532)
Q Consensus 100 A~~Gy~LLWvllla~-----i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 149 (532)
|.+|+++....+++. +.+..+.|++++..-.+| +...-.|+-+|++..+
T Consensus 29 a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G-G~y~wv~~a~G~~~Gf 82 (507)
T TIGR00910 29 ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG-GIFAWVSNTLGERFGF 82 (507)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CeeeehhhccCccHHH
Confidence 467787755444443 346666777766542233 6667778888876554
No 44
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=96.96 E-value=0.84 Score=50.00 Aligned_cols=37 Identities=16% Similarity=0.081 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHhhhchhhhhhhhhHH
Q 009526 335 AGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAGQ 374 (532)
Q Consensus 335 a~~~L~~~~G~~~~~a~~ifaigLlaAg~sStit~t~ag~ 374 (532)
..+..+..+|+ +...+..++.+.+.+++..+...++.
T Consensus 270 ~~~~~~~~~g~---~~~~~i~i~~~is~~~~~~~~~~~~s 306 (473)
T TIGR00905 270 MAAVLEMIVGK---WGAVLISLGLIISVLGSLLSWTMLAA 306 (473)
T ss_pred HHHHHHHHhCh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777 66667778777777777666555433
No 45
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=96.91 E-value=0.87 Score=49.37 Aligned_cols=156 Identities=16% Similarity=0.102 Sum_probs=85.7
Q ss_pred chHHHHHHhhcCCCchhhhhhhHHHhhHHHH-HHHHHHHHHHHHHHHHHhHhhhhcCC---CHHHHHHhhCCchHHHHHH
Q 009526 77 GPGFLMSIAFLDPGNLEGDLQSGAVAGYSLL-WLLMWATVMGLLIQLLSARVGVATGR---HLAELCREEYPNWARFVLW 152 (532)
Q Consensus 77 GPG~L~a~a~idpG~i~t~~qaGA~~Gy~LL-Wvllla~i~~~~~Q~laaRlgvvTGk---~Lae~~r~~y~~~~~~~l~ 152 (532)
|=-+++.-..+|.|=+.-=.+++ ..||--. -.++++-++.+..+++-.|.-.-+++ +..+..++++||+.+++..
T Consensus 13 ~~vl~l~gT~IGAGvL~lP~a~~-~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~ 91 (415)
T COG0814 13 GGVLILAGTAIGAGVLFLPVAFG-GGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIG 91 (415)
T ss_pred HHHHHHHccccccchhhhhHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHH
Confidence 33444555567777665544443 3333222 23445666777777777777766555 7899999999998888655
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHhcCC-cchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 009526 153 FMAEVALIGADIQEVIGSAI----AIQILSHGV-LPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWM 227 (532)
Q Consensus 153 i~~~la~i~~di~eviG~Ai----al~lL~gg~-ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~ 227 (532)
+...+...+...+=..+.+- -++-.++.. .+...+.++.......+.+.+ -+...|....++..+.++++..
T Consensus 92 ~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~---~~~~lk~ts~l~~~~v~~~~~l 168 (415)
T COG0814 92 LSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLG---TLAVLKITSLLVFGKVIYLVLL 168 (415)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhc---hhHHHHHHHHHHHHHHHHHHHH
Confidence 44333322222211111110 011112322 344544444333222233333 3677788888888888888777
Q ss_pred HHhcCCChh
Q 009526 228 FGDTQPSGK 236 (532)
Q Consensus 228 ~~~~~P~~~ 236 (532)
.+..-|.|.
T Consensus 169 ~~~~~~~~~ 177 (415)
T COG0814 169 VVYLIPHWN 177 (415)
T ss_pred HHHHhcccC
Confidence 776666653
No 46
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.70 E-value=0.53 Score=52.12 Aligned_cols=160 Identities=13% Similarity=0.053 Sum_probs=72.8
Q ss_pred HHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhc---CCChhhhhhcccccC-------CChhHHHHHHHHHccc--chhH
Q 009526 199 LFLENYGVRKLEAVFAVLIATMALSFAWMFGDT---QPSGKELLVGVLVPR-------LSSKTIRQAVGVVGCV--IMPH 266 (532)
Q Consensus 199 l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~~~~~---~P~~~~v~~G~~vP~-------~~~~~l~~avaiiGat--imP~ 266 (532)
.++..+.-|.++++.++-+....+.++...+.. +.+-...-+|-.+.. .+...+...++..+.. +.-|
T Consensus 189 ~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGy 268 (550)
T KOG1289|consen 189 GLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGY 268 (550)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEecc
Confidence 344556668888888887666666666555432 111000111222211 1224566777766542 3333
Q ss_pred HHHHHHHHhhhhcCCCCcccchHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCcc-cccCchhHHHHHHHhhc
Q 009526 267 NVFLHSALVQSRNIDPKKKGRVQEALNYYSIESSVALLVSFMINLFLTTVFAKGFY-GTKQA-NSIGLVNAGQYLQEKYG 344 (532)
Q Consensus 267 ~lflhS~lV~~r~~~~~~~~~~~~~l~~~~~Ds~i~l~vs~lIn~~i~~v~A~~~~-~~~~~-~~~~l~~a~~~L~~~~G 344 (532)
----|= .+|- .+. .+.+=|-..--..++.++++.++++++ ..+- ..+.. ++..-+...+.+.+.+|
T Consensus 269 Da~~H~--aEE~-~nA-----sk~aPrgIi~s~~i~~i~gw~~~I~i~----~~i~~D~~~v~ns~~g~p~~~i~~~~lg 336 (550)
T KOG1289|consen 269 DAAAHM--AEET-KNA-----SKAAPRGIISSIAIGFILGWIIIIGIA----YTIPDDLDAVLNSSLGQPIVQIYYQALG 336 (550)
T ss_pred CchHHH--HHHh-cch-----hhhccHHHHHHHHHHHHHHHHHHHHHH----HhccchHHHHhcCCCCChHHHHHHHhcC
Confidence 222331 1111 110 011222222233444455555554443 2221 11100 11112445778888888
Q ss_pred CChhH-HHHHHHHHHHhhhchhhhhhh
Q 009526 345 GGYLP-ILYIWGIGLLAAGQSSTITGT 370 (532)
Q Consensus 345 ~~~~~-a~~ifaigLlaAg~sStit~t 370 (532)
+.... -..+-.+.++..|+++..+.+
T Consensus 337 ~k~~v~~~~l~ii~~f~~gi~s~~a~S 363 (550)
T KOG1289|consen 337 KKGAVFLLSLIIIALFFMGISSLTASS 363 (550)
T ss_pred CCceEehhHHHHHHHHHhhHHHHHHHH
Confidence 74321 223556677778888776554
No 47
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=96.61 E-value=1.6 Score=48.17 Aligned_cols=36 Identities=17% Similarity=0.164 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHH
Q 009526 113 ATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFV 150 (532)
Q Consensus 113 a~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 150 (532)
+.+.++.+-|++.++=. +| +.-.-.++.||+...+.
T Consensus 90 ~~~~al~~aELas~~P~-sG-G~y~~~~~~~g~~~gf~ 125 (501)
T TIGR00911 90 SIVGALVYAELGTTIPK-SG-GEYNYILEVFGPLLAFL 125 (501)
T ss_pred HHHHHHHHHHHHhhcCC-CC-chhhhHHhHhCCHHHHH
Confidence 34455666677666542 23 55666777888876553
No 48
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=96.50 E-value=1.7 Score=47.44 Aligned_cols=38 Identities=16% Similarity=0.013 Sum_probs=28.1
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHhhhchhhhhhhhhHHH
Q 009526 335 AGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAGQF 375 (532)
Q Consensus 335 a~~~L~~~~G~~~~~a~~ifaigLlaAg~sStit~t~ag~~ 375 (532)
....++..+|+ +...++.++.+.+.+++..+..+++..
T Consensus 266 ~~~~~~~~~g~---~~~~~i~~~~~is~~~~~~~~~~~~sR 303 (468)
T TIGR03810 266 MAYVLEHMVGT---WGAVLINIGLIISILGAWLSWTLLPAE 303 (468)
T ss_pred HHHHHHHHcch---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788887 777788888888888887776665433
No 49
>PRK11021 putative transporter; Provisional
Probab=96.32 E-value=2 Score=46.06 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=21.8
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhhhchhhhhhhhh
Q 009526 336 GQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYA 372 (532)
Q Consensus 336 ~~~L~~~~G~~~~~a~~ifaigLlaAg~sStit~t~a 372 (532)
.+.+++.+|+ +...++.+..+.+.+++..+..++
T Consensus 249 ~~~~~~~~G~---~~~~ii~i~~~~s~~~~~~~~~~~ 282 (410)
T PRK11021 249 PGIFVQLFGG---YALWVICVIGYLACFASVNIYTQS 282 (410)
T ss_pred HHHHHHHhCc---hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778887 555666766666667666554444
No 50
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.28 E-value=2.3 Score=46.52 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=53.9
Q ss_pred HhHhhhhcCCCHHHHHHhhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHH
Q 009526 124 SARVGVATGRHLAELCREEYP-NWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFL 201 (532)
Q Consensus 124 aaRlgvvTGk~Lae~~r~~y~-~~~~~~l~i~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l 201 (532)
+-|+==.-+-+.+|-+.+||. +..|++.-+...+......++++.|++.-+..++| +|..+++.+..+...+...+
T Consensus 95 A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g--v~~~vgv~ig~ilm~~Yvv~ 171 (529)
T COG4147 95 AEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG--VPYHVGVVIGGILMMVYVVL 171 (529)
T ss_pred HHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--CCceeehhhHhHHHHHHHHh
Confidence 344444455678999999986 56666555544555566667789999999999999 89999988877655444444
No 51
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=96.27 E-value=2.3 Score=46.41 Aligned_cols=37 Identities=8% Similarity=-0.082 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHH
Q 009526 113 ATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFV 150 (532)
Q Consensus 113 a~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 150 (532)
.....+.+-|++.++=.. |-+..+-.++.+|+...+.
T Consensus 49 ~~~~a~~~aEl~s~~P~~-gG~~~~~~~~~~g~~~gf~ 85 (478)
T TIGR00913 49 IYCVMQSLGEMATFYPVV-SGSFATYASRFVDPAFGFA 85 (478)
T ss_pred HHHHHHHHHHHHHhCCCC-CCCHHHHHHHHcCcHHHHH
Confidence 344555567777766543 3356677788888765543
No 52
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.27 E-value=2.5 Score=46.65 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=76.4
Q ss_pred CCCchhhhhhhHHHhhHH-----HHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHH-HHHHHHHHHHHH
Q 009526 88 DPGNLEGDLQSGAVAGYS-----LLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARF-VLWFMAEVALIG 161 (532)
Q Consensus 88 dpG~i~t~~qaGA~~Gy~-----LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~-~l~i~~~la~i~ 161 (532)
|-=|+-++..++.-+... -+-.+++++++-.++..+.+|-|..+|-+-...+|.-||-+... ...+=+..+++=
T Consensus 53 ~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~W 132 (497)
T COG1953 53 MVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGIYGANFPALIRAIVAIVW 132 (497)
T ss_pred hhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 333444444444444333 34456777888888899999999999999999999998854322 111112233333
Q ss_pred HHHHHHHHHHHHHHHHh----cC-----C------c--chHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 009526 162 ADIQEVIGSAIAIQILS----HG-----V------L--PLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSF 224 (532)
Q Consensus 162 ~di~eviG~Aial~lL~----gg-----~------i--pl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F 224 (532)
.-+|..+|. .+++++. |. . + .-+++-++.=+....+++.+-+..||+|.+-..++-++.+.+
T Consensus 133 yGvqty~Gg-~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl 211 (497)
T COG1953 133 YGVQTYAGG-LAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGL 211 (497)
T ss_pred HHHHHHHhH-HHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHH
Confidence 333433332 2333321 21 0 1 122222222223333344444567888888888777776666
Q ss_pred HHH
Q 009526 225 AWM 227 (532)
Q Consensus 225 ~~~ 227 (532)
++=
T Consensus 212 ~Iw 214 (497)
T COG1953 212 AIW 214 (497)
T ss_pred HHH
Confidence 543
No 53
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=96.26 E-value=2.3 Score=46.20 Aligned_cols=81 Identities=10% Similarity=0.145 Sum_probs=41.2
Q ss_pred CcccHHHHHHhhchHHHHHHh-hcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhC
Q 009526 65 PPFSWKKLWLFTGPGFLMSIA-FLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEY 143 (532)
Q Consensus 65 ~~~~~~~l~~~lGPG~L~a~a-~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y 143 (532)
+..+.|+.. .++=|-++..+ ++.||......-.++-.+ .+..-++....++.+-|++.|+-. + -+..+-.++.+
T Consensus 12 ~~L~~~~~~-~i~ig~~IGsGif~~~g~~~~~~G~~~~i~--~~i~~v~~~~~a~~~aEl~s~~P~-~-Gg~~~~~~~~~ 86 (452)
T TIGR01773 12 NGLKTRHVT-MLSIAGVIGAGLFVGSGSAIASAGPAALLA--YLLAGLLVVFIMRMLGEMAVANPD-T-GSFSTYADDAI 86 (452)
T ss_pred CcCcHHHHH-HHHHhhhhhchHHHhhHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHhcCC-C-CCHHHHHHHHh
Confidence 334444433 23333333332 455655554322222222 222223444566777777777654 2 36678888889
Q ss_pred CchHHHH
Q 009526 144 PNWARFV 150 (532)
Q Consensus 144 ~~~~~~~ 150 (532)
|++..+.
T Consensus 87 g~~~gf~ 93 (452)
T TIGR01773 87 GRWAGFT 93 (452)
T ss_pred CcHHHHH
Confidence 9876554
No 54
>PRK10746 putative transport protein YifK; Provisional
Probab=96.25 E-value=2.4 Score=46.39 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Q 009526 115 VMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVL-WFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITAL 193 (532)
Q Consensus 115 i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l-~i~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~ 193 (532)
..+..+-|++.++=. +| +..+-.++.+|++..+.. |.. -+.-+..-..|..+.+.-++..++. +|.|....+..+
T Consensus 58 ~v~~~~aEl~~~~P~-sG-g~~~y~~~~~g~~~Gf~~gw~~-~~~~~~~~~~~~~a~~~~l~~~~p~-~~~~~~~~~~~~ 133 (461)
T PRK10746 58 FIMRSMGEMLFLEPV-TG-SFAVYAHRYMSPFFGYLTAWSY-WFMWMAVGISEITAIGVYVQFWFPE-MAQWIPALIAVA 133 (461)
T ss_pred HHHHHHHHHHHhcCC-CC-CHHHHHHHHhCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHccCC-CchHHHHHHHHH
Confidence 344455677766642 34 567777877887554332 211 1111112223444444334444442 566655444332
Q ss_pred HHHHHHHHhhcchhHHHHHHHH
Q 009526 194 DCFIFLFLENYGVRKLEAVFAV 215 (532)
Q Consensus 194 ~~~~~l~l~~yg~r~lE~~~~~ 215 (532)
....+-..+-.-+.++|..+..
T Consensus 134 ~~~~lN~~gv~~~~~~e~~~~~ 155 (461)
T PRK10746 134 LVALANLAAVRLYGEIEFWFAM 155 (461)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 2111111221124667766543
No 55
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=96.22 E-value=2.4 Score=46.11 Aligned_cols=34 Identities=12% Similarity=0.314 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHH
Q 009526 115 VMGLLIQLLSARVGVATGRHLAELCREEYPNWARFV 150 (532)
Q Consensus 115 i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 150 (532)
+.++.+-|++.++=. +| +.-+-.+|.+|++..+.
T Consensus 40 ~~al~~aEL~s~~P~-~G-g~y~y~~~~~G~~~gf~ 73 (446)
T PRK10197 40 MIMRMLAEMAVATPD-TG-SFSTYADKAIGRWAGYT 73 (446)
T ss_pred HHHHHHHHHHHhCCC-CC-CHHHHHHHHcChHHHHH
Confidence 345555666665543 33 67888889999876553
No 56
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=95.95 E-value=2.9 Score=44.59 Aligned_cols=118 Identities=18% Similarity=0.350 Sum_probs=69.2
Q ss_pred HHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHH--H---------HHHHHHHHhHhhhhcCCCHHHHHHhhCCc-h
Q 009526 79 GFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATV--M---------GLLIQLLSARVGVATGRHLAELCREEYPN-W 146 (532)
Q Consensus 79 G~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i--~---------~~~~Q~laaRlgvvTGk~Lae~~r~~y~~-~ 146 (532)
++..++.|+..++.... -|+.|.|.|-|+++ +++ . +=-+.+.+=|++.+ ++-|..|.||.. .
T Consensus 47 Amt~~aTYisaSSFigG--pgaayk~GlgwvlL-a~iqvp~~~l~lgvlgkk~~~~ar~~nAl---tI~D~l~~RY~s~f 120 (473)
T COG4145 47 AMTFTATYISASSFIGG--PGAAYKYGLGWVLL-AMIQVPTVWLALGVLGKKFAILAREYNAL---TINDLLFARYQSRF 120 (473)
T ss_pred hhHHHHHHHHHhhhcCC--CcHHHHhchHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHhCCe---eHHHHHHHHhcchH
Confidence 34445566666666554 36778888889544 332 1 11122223333332 467777888753 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhc
Q 009526 147 ARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENY 204 (532)
Q Consensus 147 ~~~~l~i~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~~y 204 (532)
..|..-+...++-++....+++|.|=-++...| +|.-.|.+++++...+.-+++.+
T Consensus 121 l~~las~~Lifff~~~m~~qfiGgarLlE~~~g--idY~tgL~ifa~~V~iYt~fGGF 176 (473)
T COG4145 121 LVWLASLSLIFFFVGAMTVQFIGGARLLETALG--IDYTTGLLIFAVSVAIYTAFGGF 176 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC--CCchhhHHHHHHHHHHHHhhcce
Confidence 333333333344455555678898877777777 89999999998776655555543
No 57
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=95.83 E-value=3.3 Score=44.25 Aligned_cols=38 Identities=11% Similarity=-0.033 Sum_probs=25.3
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhhhchhhhhhhhhHHHH
Q 009526 336 GQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAGQFI 376 (532)
Q Consensus 336 ~~~L~~~~G~~~~~a~~ifaigLlaAg~sStit~t~ag~~v 376 (532)
....+...|+ +...++.+++..+.+++..+...+....
T Consensus 261 ~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~sR~ 298 (426)
T PF13520_consen 261 AVLASAVGGS---WLAIIVSIAAILSLFGSINAFIFGASRL 298 (426)
T ss_dssp HHHHHHHHCC---THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccccc---ccccccccccccccccccchhhcchhhc
Confidence 3444555556 6777888888888888777766554433
No 58
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=95.67 E-value=4.2 Score=44.39 Aligned_cols=126 Identities=22% Similarity=0.317 Sum_probs=84.4
Q ss_pred hcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhh--cCCCHHHHHHhhCCchHHHH----HHHHHHHHH
Q 009526 86 FLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVA--TGRHLAELCREEYPNWARFV----LWFMAEVAL 159 (532)
Q Consensus 86 ~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvv--TGk~Lae~~r~~y~~~~~~~----l~i~~~la~ 159 (532)
.+|.|=...+.++=+..|-+.+-+-+++-++.+++.+.-+.+-+. +-.+..+-++|.+|+|..++ .|.+-
T Consensus 28 aIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~w---- 103 (462)
T COG1113 28 AIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFFW---- 103 (462)
T ss_pred hhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHHHHH----
Confidence 355555555555666677788888888888888888888888777 34578999999999876443 34432
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 009526 160 IGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVL 216 (532)
Q Consensus 160 i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~L 216 (532)
+...++|+.+.++=++.-+++ +|.|+.+++..+....+-+..-..+..+|..+..+
T Consensus 104 v~v~~ae~tAi~~y~~~WfP~-vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlI 159 (462)
T COG1113 104 VLVGIAELTAIGIYLQFWFPD-VPQWVFALAAVVLLLAVNLISVKVFGELEFWFALI 159 (462)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223355666777777888875 69999888776544433333322346778766553
No 59
>TIGR00909 2A0306 amino acid transporter.
Probab=95.61 E-value=4 Score=43.75 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=24.1
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhhhchhhhhhhhhHHHHH
Q 009526 337 QYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAGQFIM 377 (532)
Q Consensus 337 ~~L~~~~G~~~~~a~~ifaigLlaAg~sStit~t~ag~~v~ 377 (532)
...++..|+ +...+..++...+.+++..+..++.....
T Consensus 268 ~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~sR~~ 305 (429)
T TIGR00909 268 LVGYDLGQG---IGGLILTAGAVFSIASVMLAGIYGTSRVL 305 (429)
T ss_pred HHHHHhCch---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666 66667778887777777776665544333
No 60
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=95.57 E-value=3.7 Score=43.03 Aligned_cols=106 Identities=11% Similarity=0.177 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHhHhhhh-cCCCHHHHHHhhCCchHHHHH-HHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 009526 110 LMWATVMGLLIQLLSARVGVA-TGRHLAELCREEYPNWARFVL-WFMA-----EVALIGADIQEVIGSAIAIQILSHGVL 182 (532)
Q Consensus 110 llla~i~~~~~Q~laaRlgvv-TGk~Lae~~r~~y~~~~~~~l-~i~~-----~la~i~~di~eviG~Aial~lL~gg~i 182 (532)
.+++.+..++.-...+|++.. -|+++.|..++.+||+....+ |... ..+....+.+|++- . .+.+ ..
T Consensus 40 ~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~l~-~t 113 (359)
T TIGR00912 40 IILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIK----T-YLLP-RT 113 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HhcC-CC
Confidence 344444444444444444433 478999999999999876643 2211 11122222223221 1 1222 25
Q ss_pred chHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 009526 183 PLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSF 224 (532)
Q Consensus 183 pl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F 224 (532)
|.|...++..+. ..+..+.|.|...|+..++..++.+.+
T Consensus 114 p~~~~~l~~l~~---~~~~~~~Gi~~i~r~~~i~~~~~i~~~ 152 (359)
T TIGR00912 114 PIIVIIILIIIV---SIYIVRKGIEVLLRTAEILLIIFLILF 152 (359)
T ss_pred CHHHHHHHHHHH---HHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 776654443322 223344577888887777666655553
No 61
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=95.28 E-value=5.4 Score=43.12 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHH
Q 009526 112 WATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFV 150 (532)
Q Consensus 112 la~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~ 150 (532)
...+.++.+-|++.|+-.. | +...-.++.+|++..+.
T Consensus 52 ~~~~~a~~~aEl~s~~P~~-G-g~y~~~~~~~G~~~gf~ 88 (442)
T TIGR00908 52 MYLTFCFSLAELSTMIPTA-G-GGYGFARRAFGPWGGFL 88 (442)
T ss_pred HHHHHHHHHHHHHHHcCCC-C-CHHHHHHHHhCcHHHHH
Confidence 3445667788999988753 3 56667788899876554
No 62
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=94.92 E-value=6.8 Score=42.40 Aligned_cols=37 Identities=11% Similarity=-0.098 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHH
Q 009526 111 MWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARF 149 (532)
Q Consensus 111 lla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 149 (532)
++..+.++.+-|++.++=.. | +.-.-.++.+|+...+
T Consensus 54 v~~l~~al~~aEl~s~~P~~-G-G~y~y~~~~~g~~~gf 90 (445)
T PRK11357 54 LIVIPQMCVYAELSTAYPEN-G-ADYVYLKNAGSRPLAF 90 (445)
T ss_pred HHHHHHHHHHHHHHhhcCCC-C-CceeeHHHhcCChhHH
Confidence 45566777788888877543 3 3334566778876554
No 63
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=94.77 E-value=7.9 Score=42.38 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=33.7
Q ss_pred HHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHH-----HHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHH
Q 009526 81 LMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWAT-----VMGLLIQLLSARVGVATGRHLAELCREEYPNWARF 149 (532)
Q Consensus 81 L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~-----i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 149 (532)
+..++-++-.|+.+ .|.+|...+...+++. +.++.+-|++.++=. +| +..+-.||.+|+...+
T Consensus 11 ~~~~~v~~~~~~~~----~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~G-G~y~~~~~a~G~~~gf 78 (474)
T TIGR03813 11 MNITAVVSLRGLPA----EAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KG-GVFRWVGEAFGARWGF 78 (474)
T ss_pred HHHHHHHHhhcchH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CC-CceeeHhhhcChhHHH
Confidence 33344445555543 3456666643333333 345566666665543 22 5666778888876544
No 64
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=94.73 E-value=7.9 Score=42.23 Aligned_cols=281 Identities=15% Similarity=0.191 Sum_probs=128.8
Q ss_pred HhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcC----CC-----HHHHHHhhCC-chHHHHHHH
Q 009526 84 IAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATG----RH-----LAELCREEYP-NWARFVLWF 153 (532)
Q Consensus 84 ~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTG----k~-----Lae~~r~~y~-~~~~~~l~i 153 (532)
++-+|.||++.-..|=+.=|-.-+..+.+..+++-.-++.=+-+++.-+ ++ .+--+.+-++ ||...+.-
T Consensus 74 a~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~~r~l~v~FA- 152 (452)
T COG1115 74 AARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLGMRWLAVLFA- 152 (452)
T ss_pred HhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcCCcHHHHHHH-
Confidence 4469999998877776666666565555555555444444333333211 11 1111111122 23222211
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Q 009526 154 MAEVAL---IGADIQEVIGSAIAIQILSHGVLPLWA-GVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFG 229 (532)
Q Consensus 154 ~~~la~---i~~di~eviG~Aial~lL~gg~ipl~~-gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~~~ 229 (532)
...+.. ++...| .-.++-+++--++ +|.|. ++.++.+..++ --.|.|++-++...++=.|++.|+...+
T Consensus 153 ~~li~afg~i~n~vQ-~NsIa~a~~~af~--~~~~~~gi~la~l~~~V----I~GGi~rIa~v~~~vVPfMA~~Yi~~~~ 225 (452)
T COG1115 153 FALIAAFGFIGNGVQ-SNSIASALANAFG--IPPLVTGIVLALLVALV----IFGGIKRIAKVSSKVVPFMAILYVLVAL 225 (452)
T ss_pred HHHHHHHHhhcchhh-HHHHHHHHHHhcC--CcHHHHHHHHHHHHHHH----HHcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 222222 2344556666777 77555 44444332221 2257799999999999999999987654
Q ss_pred hc---C----CC-hhhhhhcccccCCChhHHHHHHHHHcccchhHHHH-HHHHH-hhhhcCCCCcccchHHhhhhHHHHH
Q 009526 230 DT---Q----PS-GKELLVGVLVPRLSSKTIRQAVGVVGCVIMPHNVF-LHSAL-VQSRNIDPKKKGRVQEALNYYSIES 299 (532)
Q Consensus 230 ~~---~----P~-~~~v~~G~~vP~~~~~~l~~avaiiGatimP~~lf-lhS~l-V~~r~~~~~~~~~~~~~l~~~~~Ds 299 (532)
.. + |+ ...+.++-|-|+ ..+=|.+|++++--... ..-++ ..|.+.....-......-++--.+-
T Consensus 226 ~Ii~~n~~~iP~~i~~If~sAF~~~------aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~QG 299 (452)
T COG1115 226 VIIVLNISQIPAVIALIFSSAFGPK------AAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVKQG 299 (452)
T ss_pred HHHHhhHhhhHHHHHHHHHhcCCch------hhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHHhhcCCCcHHHh
Confidence 32 2 11 122233323222 12334555544322211 00000 0011100000000000000111111
Q ss_pred HHHHHHHHHHHHH------HHHHHhhhccCCCcccccCchhHHHHHHHhhcCChhHHHHHHHHHHHhhhchhhhhhhhhH
Q 009526 300 SVALLVSFMINLF------LTTVFAKGFYGTKQANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAG 373 (532)
Q Consensus 300 ~i~l~vs~lIn~~------i~~v~A~~~~~~~~~~~~~l~~a~~~L~~~~G~~~~~a~~ifaigLlaAg~sStit~t~ag 373 (532)
.++++-.|+=++. ++++. ...|..+.. ..+.+=.-++++..+|+ +..++.+++++.-++||.+...|-+
T Consensus 300 lv~~~gvfiDT~iVCt~Ta~iIL~-sg~~~~~~~-~~G~~ltq~A~~~~~g~---~G~~fv~i~l~lFafTTIlg~yyyg 374 (452)
T COG1115 300 LVQMLGVFIDTLVVCTATAFIILL-SGAWNSGGG-LSGAALTQAAFSSHLGS---WGSYFVAIALFLFAFTTILGWYYYG 374 (452)
T ss_pred HHHHhhhhhhhhHHhhHHHHHHHH-cCCcccCCC-CchHHHHHHHHHHhcCc---cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222211111 11111 122221110 01112123578899998 8999999999999999999888777
Q ss_pred HHHHhhhcCC
Q 009526 374 QFIMGGFLNL 383 (532)
Q Consensus 374 ~~v~~gfl~~ 383 (532)
+..++=..+.
T Consensus 375 e~~~~fl~~~ 384 (452)
T COG1115 375 EKNIEFLFGS 384 (452)
T ss_pred HHHHHHHhCC
Confidence 7666554443
No 65
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=94.45 E-value=0.36 Score=52.80 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhhhchhhhhhhhhHH
Q 009526 349 PILYIWGIGLLAAGQSSTITGTYAGQ 374 (532)
Q Consensus 349 ~a~~ifaigLlaAg~sStit~t~ag~ 374 (532)
+...++.++.+.+.+++.....+++.
T Consensus 287 ~~~~i~~~~~l~s~~s~~~~~~~~~s 312 (478)
T PF00324_consen 287 WLAWIVNAGILISAFSSANASLYAAS 312 (478)
T ss_pred cccceecccchhhhhhhhhhhhcccc
Confidence 45567788888888887776665533
No 66
>PRK10580 proY putative proline-specific permease; Provisional
Probab=94.17 E-value=10 Score=41.24 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=38.8
Q ss_pred ccHHHHHHhhchHHHHHHh-hcCCCchhhhhhhHHHhhHHHHHHHHHH----HHHHHHHHHHHhHhhhhcCCCHHHHHHh
Q 009526 67 FSWKKLWLFTGPGFLMSIA-FLDPGNLEGDLQSGAVAGYSLLWLLMWA----TVMGLLIQLLSARVGVATGRHLAELCRE 141 (532)
Q Consensus 67 ~~~~~l~~~lGPG~L~a~a-~idpG~i~t~~qaGA~~Gy~LLWvllla----~i~~~~~Q~laaRlgvvTGk~Lae~~r~ 141 (532)
.+.+... .++=|-++..+ +..||..... +|. ..+|..+++ ...++.+.|++.|+-. + -+..+-.++
T Consensus 11 L~~~~~~-~i~vg~~IG~Gif~~~g~~~~~--aG~----~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~-Gg~y~y~~~ 81 (457)
T PRK10580 11 LSTRHIR-FMALGSAIGTGLFYGSADAIKM--AGP----SVLLAYIIGGVAAYIIMRALGEMSVHNPA-A-SSFSRYAQE 81 (457)
T ss_pred CcHHHHH-HHHHHHHHHHHHHHHHHHHHHH--hCh----HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C-CCHHHHHHH
Confidence 4444443 23444444333 4566654442 333 233433333 3345556777776553 2 356667788
Q ss_pred hCCchHHHH
Q 009526 142 EYPNWARFV 150 (532)
Q Consensus 142 ~y~~~~~~~ 150 (532)
.+||...+.
T Consensus 82 ~~G~~~gf~ 90 (457)
T PRK10580 82 NLGPLAGYI 90 (457)
T ss_pred HcCcHHHHH
Confidence 889876554
No 67
>PRK15015 carbon starvation protein A; Provisional
Probab=93.06 E-value=1.3 Score=50.32 Aligned_cols=61 Identities=31% Similarity=0.483 Sum_probs=43.5
Q ss_pred CCCchhhhhhhHHHhhH--HHHHHHHHHHHHHHHHHHHHhHhhhh--cCCCHHHHHHhhCCchHHHH
Q 009526 88 DPGNLEGDLQSGAVAGY--SLLWLLMWATVMGLLIQLLSARVGVA--TGRHLAELCREEYPNWARFV 150 (532)
Q Consensus 88 dpG~i~t~~qaGA~~Gy--~LLWvllla~i~~~~~Q~laaRlgvv--TGk~Lae~~r~~y~~~~~~~ 150 (532)
|+|-++.-..| ++||| .+||+++=+.+.+ .+|.+.+=...+ -||++.|..||+.|+..+..
T Consensus 98 GAGPivGPvlA-a~~GwlP~~LWIl~G~vf~G-aVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~l 162 (701)
T PRK15015 98 GAGPLVGPVLA-AQMGYLPGMIWLLAGVVLAG-AVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVI 162 (701)
T ss_pred ccCccHHHHHH-HHHcchHHHHHHHHcceeec-hhhhhhheeeeecCCCccHHHHHHHHhhHHHHHH
Confidence 34444444444 48999 5888876555554 778877766655 69999999999999876654
No 68
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=93.01 E-value=2.4 Score=45.07 Aligned_cols=61 Identities=18% Similarity=0.386 Sum_probs=44.8
Q ss_pred CCCchhhhhhhHHHhhHH--HHHHHHHHHHHHHHHHHHHhHhhhh--cCCCHHHHHHhhCCchHHHH
Q 009526 88 DPGNLEGDLQSGAVAGYS--LLWLLMWATVMGLLIQLLSARVGVA--TGRHLAELCREEYPNWARFV 150 (532)
Q Consensus 88 dpG~i~t~~qaGA~~Gy~--LLWvllla~i~~~~~Q~laaRlgvv--TGk~Lae~~r~~y~~~~~~~ 150 (532)
|.|-+..-..+ ++|||- +||+++=+.+.+ .+|.+.+=...+ -||++.|.++++.||..+.+
T Consensus 67 GaGPI~GPi~a-a~~GwlPa~lWI~~G~if~G-aVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~l 131 (376)
T PF02554_consen 67 GAGPIVGPILA-AQFGWLPALLWIVFGCIFAG-AVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKL 131 (376)
T ss_pred ccccchHHHHH-HHhcchHHHHHHHHccHHHH-HHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHH
Confidence 44446666665 999996 888776655555 667766655555 79999999999999877664
No 69
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=92.49 E-value=15 Score=38.02 Aligned_cols=116 Identities=18% Similarity=0.354 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhh-cCCCHHHHHHhhCCchHHHHHHHH---HHH---HHHHHHHHHHHHHHHHHHHHhcCC
Q 009526 109 LLMWATVMGLLIQLLSARVGVA-TGRHLAELCREEYPNWARFVLWFM---AEV---ALIGADIQEVIGSAIAIQILSHGV 181 (532)
Q Consensus 109 vllla~i~~~~~Q~laaRlgvv-TGk~Lae~~r~~y~~~~~~~l~i~---~~l---a~i~~di~eviG~Aial~lL~gg~ 181 (532)
..+++.+...++-.+..|+.-- .|+++.|..++.+|||....+-+. -.+ +....+..|++. ..++ +.
T Consensus 37 ~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~----~~~l-p~- 110 (320)
T PF03845_consen 37 SVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIK----TYLL-PE- 110 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhc-Cc-
Confidence 4566777777777777777775 899999999999999877643221 112 222222233322 1223 32
Q ss_pred cchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 009526 182 LPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGDTQP 233 (532)
Q Consensus 182 ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~~~~~~P 233 (532)
-|.|...++..+.+ .+..+.|.+.+=|....+...+.+.++......-|
T Consensus 111 TP~~~i~~~~ll~~---~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~ 159 (320)
T PF03845_consen 111 TPIWVIILLFLLVA---AYAARKGIEVIARVAEILFPIFLILLLLILLLSIP 159 (320)
T ss_pred CCHHHHHHHHHHHH---HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 68777555544332 33345566666665555555554555444444433
No 70
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=91.80 E-value=23 Score=38.73 Aligned_cols=330 Identities=16% Similarity=0.150 Sum_probs=155.0
Q ss_pred HHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhh-cCCCHHHHHHhhCCchHHHHHHHHHHH
Q 009526 79 GFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVA-TGRHLAELCREEYPNWARFVLWFMAEV 157 (532)
Q Consensus 79 G~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvv-TGk~Lae~~r~~y~~~~~~~l~i~~~l 157 (532)
|+..=.-+.|+||+.-=..-|.+.|-+..|..+-..+-++.+=.++ .+.+. +|.+..+.-++ -||+...++....-+
T Consensus 9 g~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lg-via~~~~~~~~~~l~~~-v~~~f~~if~~~i~l 86 (427)
T PF05525_consen 9 GFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLG-VIAVAKSGGGIEDLASR-VGPKFALIFTILIYL 86 (427)
T ss_pred HHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCHHHHhcc-cCcHHHHHHHHHHHH
Confidence 4555567899999999999999999999998888777777666655 44444 55566666555 688777665544333
Q ss_pred HHHHHHH--HHH--HHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH--HHHHHHH
Q 009526 158 ALIGADI--QEV--IGSAIAIQILSH--GVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMAL--SFAWMFG 229 (532)
Q Consensus 158 a~i~~di--~ev--iG~Aial~lL~g--g~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l--~F~~~~~ 229 (532)
.+ +--. .-- ..-.++..-+++ ..++++...++....++ ++..|- -|.+|++=+++-=++.+ ..++...
T Consensus 87 ~I-GP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~--~l~~~p-~kivd~iGk~LTP~LL~~l~ilii~~ 162 (427)
T PF05525_consen 87 SI-GPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITY--LLSLNP-SKIVDRIGKFLTPILLILLAILIIKG 162 (427)
T ss_pred HH-HhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHH--HHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1111 100 001112222222 12333333333222222 222222 26666665554222222 2222222
Q ss_pred hcCCChhhhh-hcccccCCC--hh--HHHHHHHHHcccchhHHHHHHHHHhhhhcCCCCcccchHHhhhhHHHHHHHHHH
Q 009526 230 DTQPSGKELL-VGVLVPRLS--SK--TIRQAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALNYYSIESSVALL 304 (532)
Q Consensus 230 ~~~P~~~~v~-~G~~vP~~~--~~--~l~~avaiiGatimP~~lflhS~lV~~r~~~~~~~~~~~~~l~~~~~Ds~i~l~ 304 (532)
..+|...... .+- .++-| .+ .-++-+=.+++.+-- .+..++ .++|+.++ .|+-.|+...-..++.+
T Consensus 163 i~~p~g~~~~~~~~-y~~~~f~~Gf~eGY~TMD~laal~Fg-~iIi~~--i~~~g~~~-----~k~~~~~~~~ag~ia~~ 233 (427)
T PF05525_consen 163 IFSPIGPPQAPSGA-YASNPFFKGFLEGYQTMDALAALAFG-IIIINA--IRQKGYKD-----KKEIKKYTIKAGLIAGI 233 (427)
T ss_pred HHcCCCCccccchh-hhhhHHHHHHHHHHhhhhHHHHHHHH-HHHHHH--HHHhCCCC-----HHHHHHHHHHHHHHHHH
Confidence 3344321000 000 01111 00 111222222221100 111111 24454431 13344444444445544
Q ss_pred HHHHHHHHHHHHHhhhccCCCcccccCchhHHHHHHHhhcCChhHHHHHHHHHHHhhhchhhhhhhhh-HHHHHhhhcCC
Q 009526 305 VSFMINLFLTTVFAKGFYGTKQANSIGLVNAGQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYA-GQFIMGGFLNL 383 (532)
Q Consensus 305 vs~lIn~~i~~v~A~~~~~~~~~~~~~l~~a~~~L~~~~G~~~~~a~~ifaigLlaAg~sStit~t~a-g~~v~~gfl~~ 383 (532)
.-.+|-....-++|..-..-+. +..+.+=..+.-+..+|+ ....++++..+.|.+++.+.-+-+ +++.-|-+ +
T Consensus 234 lL~~IY~gL~~lGa~~~~~~~~-~~~g~~lL~~i~~~~~G~---~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~-~- 307 (427)
T PF05525_consen 234 LLALIYGGLAYLGATSSGSFPD-DINGAELLSQIANHLFGS---AGQILLGIIVFLACLTTAIGLISACAEYFSELF-P- 307 (427)
T ss_pred HHHHHHHHHHHHccCCcccccC-CCCHHHHHHHHHHHHcCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-
Confidence 4455555555555543111010 011111224455788998 888999999999999988755433 34444433 3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 009526 384 PMKKWLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPFALIPLL 439 (532)
Q Consensus 384 ~~~~~~r~l~t~~iaivpal~v~~~~g~~~~~l~~l~~~~~vl~s~~LPfalipll 439 (532)
|-.++.....+.++ +.+++ ..| ++++..++.=+..+.=|.+.+-.+
T Consensus 308 ---kisY~~~v~i~~i~-S~~ia-n~G-----l~~Ii~~s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 308 ---KISYKVWVIIFTIF-SFIIA-NLG-----LDQIIKISVPILMFIYPVAIVLIL 353 (427)
T ss_pred ---ccChHHHHHHHHHH-HHHHH-HhC-----HHHHHHHHHHHHHHHhHHHHHHHH
Confidence 23333333333322 33332 223 556666655455566777766554
No 71
>PRK10655 potE putrescine transporter; Provisional
Probab=91.50 E-value=23 Score=38.18 Aligned_cols=32 Identities=6% Similarity=0.089 Sum_probs=19.3
Q ss_pred HHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHH
Q 009526 116 MGLLIQLLSARVGVATGRHLAELCREEYPNWARF 149 (532)
Q Consensus 116 ~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 149 (532)
..+.+-|++.|+=. +| +...-.|+.+||+..+
T Consensus 54 ~a~~~aeL~~~~P~-~G-G~y~y~~~~~G~~~gf 85 (438)
T PRK10655 54 LAYAFAKCGMFSRK-SG-GMGGYAEYAFGKSGNF 85 (438)
T ss_pred HHHHHHHHhhhCCC-CC-chHHHHHHHcCcchHH
Confidence 35566666666433 23 4566677888886544
No 72
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=90.47 E-value=29 Score=37.53 Aligned_cols=36 Identities=14% Similarity=0.081 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHH
Q 009526 111 MWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARF 149 (532)
Q Consensus 111 lla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 149 (532)
+.+.+.++.+.|++.|+=. +| +..+-.|| +++...+
T Consensus 48 ~~~l~~al~~aEL~s~~P~-~G-G~y~y~~~-~g~~~gf 83 (435)
T PRK10435 48 IGAMSLAYVYARLATKNPQ-QG-GPIAYAGE-ISPAFGF 83 (435)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHH-HCcHHHH
Confidence 3455677888888888865 45 56666676 7765444
No 73
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=89.94 E-value=34 Score=37.48 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=21.3
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 009526 447 VMGVFRIGPVLERLAWTVAALVMVINGYLLL 477 (532)
Q Consensus 447 iMG~~~~~~~~~il~~i~~~~i~~lni~~v~ 477 (532)
.-|+|+.+++...+.++..+.++...+.+..
T Consensus 412 ~~g~f~lg~~g~~vn~~a~~~~~~~~v~~~~ 442 (475)
T TIGR03428 412 PAGLFSLGRWGLPVNILAVVYGALMVVNLSW 442 (475)
T ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHC
Confidence 4577888888777777777666665554443
No 74
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=88.77 E-value=45 Score=37.39 Aligned_cols=142 Identities=13% Similarity=0.205 Sum_probs=80.2
Q ss_pred hchHHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhC-Cc----hHHHH
Q 009526 76 TGPGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEY-PN----WARFV 150 (532)
Q Consensus 76 lGPG~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y-~~----~~~~~ 150 (532)
+|.|++++.+. .+.++=-+|+--+|.+.-+++..+.. -+=||+..+= ++|- .+....+| ++ -..|.
T Consensus 60 IGTGLfvgsG~----~l~~aGP~g~li~y~i~G~~vy~vm~--sLGEma~~~P-~sGs--F~~ya~rfvdpa~GFa~gWn 130 (541)
T COG0833 60 IGTGLFVGSGK----ALSQAGPAGLLIAYLIIGIMVYFVMQ--SLGELAVFYP-VSGS--FSTYATRFVDPAFGFALGWN 130 (541)
T ss_pred cccceeeecch----hhhccCcHHHHHHHHHHHHHHHHHHH--HHHHHHhhcC-CCCc--hhhhhhhhcCchHHHHHHHH
Confidence 77777765432 12222256777788777776665543 3558888888 6773 12222222 22 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 009526 151 LWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGD 230 (532)
Q Consensus 151 l~i~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~m~l~F~~~~~~ 230 (532)
.|+. -+..+. .|+..+++-++.-++..+|.|.++.+..+..+++=++.-.+|--.|..+..+=.++.+.|++..+.
T Consensus 131 Yw~~-w~v~~~---~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii 206 (541)
T COG0833 131 YWLN-WAVTLP---LELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGII 206 (541)
T ss_pred HHHH-HHHHhh---HHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHH
Confidence 3432 112222 356566666777765457889888887765555445554456677777666555555566554443
No 75
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=88.50 E-value=40 Score=36.45 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHH
Q 009526 111 MWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARF 149 (532)
Q Consensus 111 lla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 149 (532)
+.+.+.++.+-|++.++=. +| +.-+-.|+.|||+..+
T Consensus 51 ~~~l~~al~~aEL~s~~P~-aG-G~y~~~~~~~g~~~gf 87 (445)
T PRK10644 51 IGALGLSMVYAKMSSLDPS-PG-GSYAYARRCFGPFLGY 87 (445)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHHHcCchHHH
Confidence 4555667777888887753 34 6666788889987654
No 76
>PRK10836 lysine transporter; Provisional
Probab=87.63 E-value=49 Score=36.41 Aligned_cols=61 Identities=18% Similarity=0.207 Sum_probs=27.8
Q ss_pred cccHHHHHHhhchHHHHHHh-hcCCCchhhhhhh-HHHhhHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 009526 66 PFSWKKLWLFTGPGFLMSIA-FLDPGNLEGDLQS-GAVAGYSLLWLLMWATVMGLLIQLLSARVGV 129 (532)
Q Consensus 66 ~~~~~~l~~~lGPG~L~a~a-~idpG~i~t~~qa-GA~~Gy~LLWvllla~i~~~~~Q~laaRlgv 129 (532)
..+.++... ++=|-.+..+ ++.||......-. ++-.+|-+. -+++...++.+-|++.|+=.
T Consensus 16 ~L~~~~~~~-l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~--g~~~~~~al~~aEL~s~~P~ 78 (489)
T PRK10836 16 ELKARHLTM-IAIGGSIGTGLFVASGATISQAGPGGALLSYMLI--GLMVYFLMTSLGELAAYMPV 78 (489)
T ss_pred cCcHHHHHH-HHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHH--HHHHHHHHHHHHHHHHHCCC
Confidence 344444332 3333333333 4566665553221 122222222 22344455566788887765
No 77
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=83.48 E-value=76 Score=34.89 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=56.8
Q ss_pred hHHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHHHHHHH
Q 009526 78 PGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWFMA 155 (532)
Q Consensus 78 PG~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l~i~~ 155 (532)
=|+..=+-+.|+||+.-=..-|.+.|-+..+.++-.++-++.+=.++.=-...+|.+..+.-++ -+|+....+....
T Consensus 13 iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~g~~~~l~~r-v~~~f~~~f~~~i 89 (439)
T PRK15433 13 LGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTP-IGKVAGVLLATVC 89 (439)
T ss_pred HHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhhh-cchHHHHHHHHHH
Confidence 4666667899999999999999999999988888777777777666554444566566666555 6887776554443
No 78
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=82.61 E-value=87 Score=34.93 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhchhhhhhh
Q 009526 352 YIWGIGLLAAGQSSTITGT 370 (532)
Q Consensus 352 ~ifaigLlaAg~sStit~t 370 (532)
.+|-+.++.+|.+|.++..
T Consensus 349 ~lFFl~l~~agl~S~i~~~ 367 (523)
T PF00209_consen 349 ILFFLMLFLAGLTSQISML 367 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCce
Confidence 4677777777887776543
No 79
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=82.60 E-value=91 Score=35.16 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=37.2
Q ss_pred hhHHHhhH--HHHHHHHHHHHHHHHHHHHHhHhhhh--cCCCHHHHHHhhCCchHHHH
Q 009526 97 QSGAVAGY--SLLWLLMWATVMGLLIQLLSARVGVA--TGRHLAELCREEYPNWARFV 150 (532)
Q Consensus 97 qaGA~~Gy--~LLWvllla~i~~~~~Q~laaRlgvv--TGk~Lae~~r~~y~~~~~~~ 150 (532)
..+|+||| .+||+++=+. ++-.+|.+-.=.-.+ -||++.|..+|+.|+..+.+
T Consensus 75 vlAAq~G~Lp~~LWIl~G~V-faGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 75 ALAAQYGWLPAFLWILLGCV-FAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred HHHHHhcCcHHHHHHHHhhh-hhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 45789996 7889776544 444566654433332 69999999999999877654
No 80
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=81.48 E-value=1e+02 Score=34.96 Aligned_cols=31 Identities=29% Similarity=0.308 Sum_probs=25.2
Q ss_pred HHHH---HHHHHHHhhhchhhhhhhhhHHHHHhh
Q 009526 349 PILY---IWGIGLLAAGQSSTITGTYAGQFIMGG 379 (532)
Q Consensus 349 ~a~~---ifaigLlaAg~sStit~t~ag~~v~~g 379 (532)
++++ ++.++++.+..|+...+.|++...+-.
T Consensus 316 ~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~a 349 (554)
T KOG1286|consen 316 GAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYA 349 (554)
T ss_pred CccccchhhhHHHHHHHHHHHHHHhHHhHHHHHH
Confidence 5677 999999999999999898887765533
No 81
>PLN03074 auxin influx permease; Provisional
Probab=78.37 E-value=1.1e+02 Score=33.71 Aligned_cols=50 Identities=18% Similarity=0.230 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 009526 388 WLRALITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPFALIPLLTL 441 (532)
Q Consensus 388 ~~r~l~t~~iaivpal~v~~~~g~~~~~l~~l~~~~~vl~s~~LPfalipll~l 441 (532)
...|...|....+.+.+++... |. +..++.+...+....+-+.+=+++++
T Consensus 349 ~~~r~~~R~~lv~~~~~iA~~I---P~-fg~llsLvGs~~~s~l~~i~P~l~~l 398 (473)
T PLN03074 349 ICLRALARLPVVVPIWFLAIIF---PF-FGPINSAVGALLVSFTVYIIPSLAHM 398 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc---cc-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777666666665432 21 44444444444333333333333343
No 82
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=77.82 E-value=1.2e+02 Score=33.45 Aligned_cols=133 Identities=17% Similarity=0.153 Sum_probs=60.8
Q ss_pred CCHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C--CcchHHHHHHHHHHHHHHHHHhhcch
Q 009526 133 RHLAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSH----G--VLPLWAGVIITALDCFIFLFLENYGV 206 (532)
Q Consensus 133 k~Lae~~r~~y~~~~~~~l~i~~~la~i~~di~eviG~Aial~lL~g----g--~ipl~~gvlit~~~~~~~l~l~~yg~ 206 (532)
++-.|+.++-||++.+++.+.+..+...+..+.-++-.+.-++-+++ . .+..-...++++..++.+.++.+.
T Consensus 105 ~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~-- 182 (437)
T KOG1303|consen 105 YRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNF-- 182 (437)
T ss_pred CChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCc--
Confidence 44678888888866555444443333333333322222222222221 1 121123345555555555555554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCChh----hhhhcccccCCC-hhHHHHHHHHHcccchhHHHHH
Q 009526 207 RKLEAVFAVLIATMALSFAWMFGDTQPSGK----ELLVGVLVPRLS-SKTIRQAVGVVGCVIMPHNVFL 270 (532)
Q Consensus 207 r~lE~~~~~Lv~~m~l~F~~~~~~~~P~~~----~v~~G~~vP~~~-~~~l~~avaiiGatimP~~lfl 270 (532)
+.+- ......++|.+++...++.+..-.+ +..++ .++.. .+..+.++|++.-.-.-|+.+.
T Consensus 183 ~~l~-~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~--~~~~~~~~~~f~a~g~iaFaf~gH~v~p 248 (437)
T KOG1303|consen 183 HSLS-YLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGG--YLDLGTIPTVFTALGIIAFAYGGHAVLP 248 (437)
T ss_pred chhH-HHHHHHHHHHHHHHHHHHHHhhccccccCCcccC--cccCCCCcchhhhhhheeeeecCCeeee
Confidence 2222 2223345555555555444321111 11122 12221 1122688999988887788773
No 83
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=71.03 E-value=1.6e+02 Score=32.08 Aligned_cols=75 Identities=20% Similarity=0.228 Sum_probs=57.4
Q ss_pred hHHHHHHhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHHHHHH
Q 009526 78 PGFLMSIAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNWARFVLWF 153 (532)
Q Consensus 78 PG~L~a~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~~l~i 153 (532)
=|+..=+-+.|+||++-=...|-+.|....|..+-..+-++.+=.+.-=-....|++..+.-++ -+||...++-.
T Consensus 10 ~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~g~~~~~l~~~-i~~~fg~~f~~ 84 (431)
T COG1114 10 LGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALYGGGVESLATR-IGPWFGVLFAI 84 (431)
T ss_pred HHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhccCCCHHHHhhh-ccchHHHHHHH
Confidence 3666667789999999999999999999888887766666666666555566688888777655 78887765433
No 84
>PRK03557 zinc transporter ZitB; Provisional
Probab=69.59 E-value=1.5e+02 Score=30.87 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=15.2
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 009526 204 YGVRKLEAVFAVLIATMAL 222 (532)
Q Consensus 204 yg~r~lE~~~~~Lv~~m~l 222 (532)
||+.|+|.+...+.+++.+
T Consensus 81 yG~~r~E~l~al~~~~~l~ 99 (312)
T PRK03557 81 FGWLRLTTLAAFVNAIALV 99 (312)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 8999999998887776543
No 85
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=68.10 E-value=1.9e+02 Score=31.76 Aligned_cols=61 Identities=11% Similarity=0.175 Sum_probs=32.2
Q ss_pred hhcCCCchhhhh-hhHHHhhHHHHHHHHHHHH----HHHHHHHHHhHhhhhcCCCHHHHHHhhCCchHHH
Q 009526 85 AFLDPGNLEGDL-QSGAVAGYSLLWLLMWATV----MGLLIQLLSARVGVATGRHLAELCREEYPNWARF 149 (532)
Q Consensus 85 a~idpG~i~t~~-qaGA~~Gy~LLWvllla~i----~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~~~~ 149 (532)
+-++-+++..+. +.|. -..+|.++.+.+ .+..+-|++.++=-.+| +.-.-.|+-+|+...+
T Consensus 21 ~vig~~~~~~~~~~~G~---~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG-G~Y~w~~~~~G~~~gf 86 (496)
T PRK15238 21 SVFGFANSPRAFYLMGY---SAIPWYILSAILFFIPFALMMAEYGSAFKDEKG-GIYSWMNKSVGPKFAF 86 (496)
T ss_pred HHHhCCchHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHcCchHHH
Confidence 344555555333 2332 234454444433 44556666665432223 6777788888876654
No 86
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=66.81 E-value=1.4e+02 Score=34.03 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=59.3
Q ss_pred HhhcCCCchhhhhhhHHHhhHHHHHHHHHHHHHHHHHHH----HHhHhhhhcCCCHHHHHHhhCCchHHHHHHHHHHHHH
Q 009526 84 IAFLDPGNLEGDLQSGAVAGYSLLWLLMWATVMGLLIQL----LSARVGVATGRHLAELCREEYPNWARFVLWFMAEVAL 159 (532)
Q Consensus 84 ~a~idpG~i~t~~qaGA~~Gy~LLWvllla~i~~~~~Q~----laaRlgvvTGk~Lae~~r~~y~~~~~~~l~i~~~la~ 159 (532)
+++++.+++..-...|++||.+-.|.-+-+.......-. .--|.++. +.-|-.+.||++..+. ++.+..+..
T Consensus 58 aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~~~~~f~Pvf~~~~v~---~~~eYl~~Rf~~~~r~-l~~l~f~l~ 133 (585)
T KOG2349|consen 58 ASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLLLGWIFIPVFYRLGVT---TMYEYLEKRFGGRVRY-LATLSFILM 133 (585)
T ss_pred hhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHhhheEEEEEEEecCee---ehhHHHHHHhcccchh-hHHHHHHHH
Confidence 678889999999999999999887765544443322221 12344443 3567777788876444 233322222
Q ss_pred HHHHHHHHH-HHHHHHHHHhcCCcchHHHHHHHHHHH
Q 009526 160 IGADIQEVI-GSAIAIQILSHGVLPLWAGVIITALDC 195 (532)
Q Consensus 160 i~~di~evi-G~Aial~lL~gg~ipl~~gvlit~~~~ 195 (532)
+..-+...+ --|+++|-.+| +.++..+.+....|
T Consensus 134 ~~~~l~v~~y~pal~~~qvtg--~~~~l~~~~~~~ic 168 (585)
T KOG2349|consen 134 IFLYLPVDMYAPALAINQVTG--INLYLIVVILGLIC 168 (585)
T ss_pred HHhheeeeEeehHHHHHHHhc--cCceeehHHHHHHH
Confidence 222222111 23667777777 55554444444444
No 87
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=64.40 E-value=57 Score=31.04 Aligned_cols=11 Identities=27% Similarity=0.247 Sum_probs=6.8
Q ss_pred HHHHHhcCCcc
Q 009526 173 AIQILSHGVLP 183 (532)
Q Consensus 173 al~lL~gg~ip 183 (532)
++.++|||.+.
T Consensus 116 ~fa~lfgg~~~ 126 (193)
T PF06738_consen 116 AFALLFGGSWI 126 (193)
T ss_pred HHHHHHCCCHH
Confidence 45567887643
No 88
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=63.99 E-value=2.5e+02 Score=31.62 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhchhhhhhhhhHHHH
Q 009526 349 PILYIWGIGLLAAGQSSTITGTYAGQFI 376 (532)
Q Consensus 349 ~a~~ifaigLlaAg~sStit~t~ag~~v 376 (532)
++..+..++.+.+..++.++..++...+
T Consensus 312 ~~~~ii~~~~~~~~~~sl~~~~~~~sRi 339 (557)
T TIGR00906 312 PAKYIVAVGALCGMSTSLLGGMFPLPRV 339 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888888777766654433
No 89
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=58.78 E-value=2.5e+02 Score=29.90 Aligned_cols=35 Identities=17% Similarity=-0.209 Sum_probs=22.6
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhhhchhhhhhhhhH
Q 009526 336 GQYLQEKYGGGYLPILYIWGIGLLAAGQSSTITGTYAG 373 (532)
Q Consensus 336 ~~~L~~~~G~~~~~a~~ifaigLlaAg~sStit~t~ag 373 (532)
........|. +...+..++.+.+.+++..+...+.
T Consensus 275 ~~~~~~~~g~---~~~~~i~~~~~~~~~~~~~~~~~~~ 309 (466)
T COG0531 275 ALAALFGGGN---WGAIIIAILALLSLFGSLLAWILAV 309 (466)
T ss_pred HHHHHHcCcc---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554 5667778888888887776665543
No 90
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=57.90 E-value=2.3e+02 Score=29.10 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=14.3
Q ss_pred cchhHHHHHHHHHHHHHH
Q 009526 204 YGVRKLEAVFAVLIATMA 221 (532)
Q Consensus 204 yg~r~lE~~~~~Lv~~m~ 221 (532)
||+.|+|.+...+.+++.
T Consensus 73 yG~~r~E~l~~l~~~~~l 90 (299)
T PRK09509 73 FGHGKAESLAALAQSMFI 90 (299)
T ss_pred CccHHHHHHHHHHHHHHH
Confidence 788999999888766544
No 91
>PF11196 DUF2834: Protein of unknown function (DUF2834); InterPro: IPR021362 This is a bacterial family of uncharacterised proteins.
Probab=57.00 E-value=1.3e+02 Score=25.98 Aligned_cols=59 Identities=10% Similarity=0.193 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 009526 454 GPVLERLAWTVAALVMVINGYLLLDFFVSEVKGLLFGFLVFTGTAAYVAFIIYLITRGS 512 (532)
Q Consensus 454 ~~~~~il~~i~~~~i~~lni~~v~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~~ 512 (532)
++....+.+=..+..+.+.+..+.|.--....++|.+++........+++-+||..|..
T Consensus 38 n~as~~~~~Dl~i~ai~~~vwi~~E~rr~~ir~~w~~i~~t~~vgvs~glPLyL~lRer 96 (97)
T PF11196_consen 38 NPASSFLSWDLLIAAIALLVWIVVEARRLGIRHWWLYIVLTFFVGVSFGLPLYLYLRER 96 (97)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35556666655566666666666666434556778777888778888999999998853
No 92
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=48.81 E-value=2.8e+02 Score=27.48 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.2
Q ss_pred cchhHHHHHHHHHHHHH
Q 009526 204 YGVRKLEAVFAVLIATM 220 (532)
Q Consensus 204 yg~r~lE~~~~~Lv~~m 220 (532)
||+.|+|.+...+.++.
T Consensus 52 yG~~r~E~l~~l~~~~~ 68 (268)
T TIGR01297 52 FGHGRAEILAALLNGLF 68 (268)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 89999999988877664
No 93
>PRK10420 L-lactate permease; Provisional
Probab=41.49 E-value=2.2e+02 Score=32.25 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=26.4
Q ss_pred HHHHHHcccchhHHHHHHHHHhhhhcCCCCcccchHHhhhhHHH
Q 009526 254 QAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALNYYSI 297 (532)
Q Consensus 254 ~avaiiGatimP~~lflhS~lV~~r~~~~~~~~~~~~~l~~~~~ 297 (532)
.+=|-+|.+|.|+|+-.-.+.+...+.+ .+..|+.+++...
T Consensus 490 ~~Gg~~GkmIspq~I~~a~a~vg~~G~E---g~ilr~t~~~~l~ 530 (551)
T PRK10420 490 TTGGVTGKMISPQSIAIACAAVGLVGKE---SDLFRFTVKHSLI 530 (551)
T ss_pred HHhhHHhhccCHHHHHHHHHHHccCCcH---HHHHHHHHHHHHH
Confidence 3467788899999999888777544322 2344555555433
No 94
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=38.16 E-value=3.8e+02 Score=25.95 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhcCccccCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 009526 427 QSIQIPFALIPLLTLVSKEQVMGV-FRIGPVLERLAWTVAALVMVINGYLLLDFFVSE 483 (532)
Q Consensus 427 ~s~~LPfalipll~l~n~k~iMG~-~~~~~~~~il~~i~~~~i~~lni~~v~~~~~~~ 483 (532)
.++...++..-+.++..+. +.+ .|.+.+ +.+...+...+..+.++.+.+.+.+.
T Consensus 119 ~~i~~G~~~~~~~~~i~~~--~~~~~r~~~~-k~~~~~~~~~~~w~~~~~~~~~lp~~ 173 (206)
T PF06570_consen 119 VSIVGGLVFYFIFKYIYPY--KKKKKRPSWW-KYILISVLAMVLWIVIFVLTSFLPPV 173 (206)
T ss_pred HHHHHHHHHHHHHHHHhcc--cccccccHHH-HHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3445555555555554433 333 344444 44444444444445555555555443
No 95
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=36.59 E-value=7.1e+02 Score=28.61 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHh
Q 009526 107 LWLLMWATVMGLLIQLLSARV 127 (532)
Q Consensus 107 LWvllla~i~~~~~Q~laaRl 127 (532)
.|+...-++.....+-..+|+
T Consensus 81 ~w~~~~~~l~~av~~~~~G~L 101 (599)
T PF06609_consen 81 SWFSTAWTLASAVSFPFVGRL 101 (599)
T ss_pred hHHHHHHHHHHHHHHHhhHHH
Confidence 455544445555555555554
No 96
>COG3671 Predicted membrane protein [Function unknown]
Probab=36.17 E-value=2.5e+02 Score=25.35 Aligned_cols=34 Identities=29% Similarity=0.280 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCcccccccccccCCCCC
Q 009526 496 GTAAYVAFIIYLITRGSDLSSNCFSLEMSKRYSNPGN 532 (532)
Q Consensus 496 ~~~~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (532)
....+.+.-+|.+.|...+ |+...-+|++-||-|
T Consensus 89 Gv~i~~AlgvW~i~Riv~G---~~yl~~g~ayp~p~~ 122 (125)
T COG3671 89 GVVILVALGVWYIYRIVIG---FKYLNEGKAYPNPKT 122 (125)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHhCCCcCCCccc
Confidence 3445666677777776544 666667777888854
No 97
>TIGR00795 lctP L-lactate transport. The only characterized member of this family, from E. coli, appears to catalyze lactate:H+ uptake. Members of this family have 12 probable TMS.
Probab=32.74 E-value=2.1e+02 Score=32.35 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=20.1
Q ss_pred HHHHHHcccchhHHHHHHHHHhhhhc
Q 009526 254 QAVGVVGCVIMPHNVFLHSALVQSRN 279 (532)
Q Consensus 254 ~avaiiGatimP~~lflhS~lV~~r~ 279 (532)
.+=|-+|.+|.|||+-.-.+.+...+
T Consensus 476 ~~Gg~~G~mIsp~~I~~a~a~vg~~G 501 (530)
T TIGR00795 476 TVGGVMGKMISPQSIAIACAAVGLVG 501 (530)
T ss_pred HHhHHHhhccCHHHHHHHHHHHccCC
Confidence 34677889999999998887775443
No 98
>PLN00151 potassium transporter; Provisional
Probab=32.58 E-value=9.4e+02 Score=28.82 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q 009526 188 VIITALDCFIFLFLENYGVRKLEAVFAVLIAT 219 (532)
Q Consensus 188 vlit~~~~~~~l~l~~yg~r~lE~~~~~Lv~~ 219 (532)
++++++.-..+..+++||-.|+-++|.-++.+
T Consensus 275 V~Is~~ILv~LF~~Q~~GT~kVg~~FgPImll 306 (852)
T PLN00151 275 VMISVAFLVILFSVQRFGTSKVGFAFGPALAL 306 (852)
T ss_pred hhHHHHHHHHHHHHHhccchhhhhhhccHHHH
Confidence 45555443444566899999999988765443
No 99
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=31.15 E-value=89 Score=23.51 Aligned_cols=38 Identities=29% Similarity=0.474 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHhhCCch
Q 009526 106 LLWLLMWATVMGLLIQLLSARVGVATGRHLAELCREEYPNW 146 (532)
Q Consensus 106 LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~~r~~y~~~ 146 (532)
.+..+.+.+...++.+. |.+--.|++|.|+++++|.+|
T Consensus 9 P~~av~iG~~ayyl~e~---R~~rp~g~~L~eLl~~k~~~~ 46 (47)
T PF11654_consen 9 PLFAVFIGTSAYYLYEN---REGRPEGHSLNELLRRKWNKW 46 (47)
T ss_pred hHHHHHHHHHHHHHHHH---hccCCCCCcHHHHHHHHhhcc
Confidence 34555666666666666 999999999999999998765
No 100
>PRK09695 glycolate transporter; Provisional
Probab=29.88 E-value=5e+02 Score=29.53 Aligned_cols=41 Identities=17% Similarity=0.180 Sum_probs=26.3
Q ss_pred HHHHHHcccchhHHHHHHHHHhhhhcCCCCcccchHHhhhhHHH
Q 009526 254 QAVGVVGCVIMPHNVFLHSALVQSRNIDPKKKGRVQEALNYYSI 297 (532)
Q Consensus 254 ~avaiiGatimP~~lflhS~lV~~r~~~~~~~~~~~~~l~~~~~ 297 (532)
.+=|-+|.+|.|+|+-.-.+.+.-.+.+ .+..|+.+++...
T Consensus 498 ~~Gg~~GkmIspq~I~~a~a~vgl~G~E---g~ilr~t~~~~l~ 538 (560)
T PRK09695 498 TSGGVTGKMISPQSIAVACAATGMVGRE---SELFRYTVKHSLI 538 (560)
T ss_pred HHhhHHhhccCHHHHHHHHHHHccCCch---hHHHHHHHHHHHH
Confidence 3467788899999999888777543322 2344555555433
No 101
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=29.80 E-value=8e+02 Score=27.16 Aligned_cols=79 Identities=14% Similarity=0.208 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-CCCCChHHHHHHHHHHHHHHHH
Q 009526 392 LITRSCAIVPTMIVALIFNTSEASLDILNEWLNVLQSIQIPFALIPLLTLVSKEQVM-GVFRIGPVLERLAWTVAALVMV 470 (532)
Q Consensus 392 l~t~~iaivpal~v~~~~g~~~~~l~~l~~~~~vl~s~~LPfalipll~l~n~k~iM-G~~~~~~~~~il~~i~~~~i~~ 470 (532)
...|....+-+..++.. .| ++..+.-+.....+..|-++.=|++.+.-..... |.++-.++.|++..+..++..+
T Consensus 364 ~~~R~~lVllt~~iA~~---iP-nL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v 439 (449)
T KOG1304|consen 364 YALRVFLVLLTFLIAVA---VP-NLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFV 439 (449)
T ss_pred HHHHHHHHHHHHHHHHH---CC-cHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHH
Confidence 34455544444455543 12 2555554445554445555555555443333333 6778888888666555555554
Q ss_pred HHHH
Q 009526 471 INGY 474 (532)
Q Consensus 471 lni~ 474 (532)
.+-|
T Consensus 440 ~Gty 443 (449)
T KOG1304|consen 440 YGTY 443 (449)
T ss_pred HHHh
Confidence 4443
No 102
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=28.94 E-value=9e+02 Score=27.45 Aligned_cols=89 Identities=17% Similarity=0.199 Sum_probs=45.0
Q ss_pred HHHHHhhchHHHHHHhh------cCCCchhhhhhhHH-----HhhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHH
Q 009526 70 KKLWLFTGPGFLMSIAF------LDPGNLEGDLQSGA-----VAGYSLLWLLMWATVMGLLIQLLSARVGVATGRHLAEL 138 (532)
Q Consensus 70 ~~l~~~lGPG~L~a~a~------idpG~i~t~~qaGA-----~~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~Lae~ 138 (532)
.-++..+-||++.+.-- .||-.-.+-..+.. ++|++ ....++++.-++|.+.+.+-. +..
T Consensus 52 ~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~~---~~~~~tllaGv~~i~~G~lRL------G~l 122 (554)
T COG0659 52 AGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLA---LAFLATLLAGVFQILLGLLRL------GRL 122 (554)
T ss_pred HHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh------hhh
Confidence 34666677777765432 23332222222222 33433 345667777788888765432 223
Q ss_pred HHhhCCchHHHHHHHHHHH--HHHHHHHHHHHHH
Q 009526 139 CREEYPNWARFVLWFMAEV--ALIGADIQEVIGS 170 (532)
Q Consensus 139 ~r~~y~~~~~~~l~i~~~l--a~i~~di~eviG~ 170 (532)
+ +..|+..-. ..+..+ .++.+++.++.|.
T Consensus 123 i-~fip~pVl~--Gf~~Giai~I~~~Ql~~~~G~ 153 (554)
T COG0659 123 I-RFIPRPVLI--GFTAGIAILIILTQLPVLLGL 153 (554)
T ss_pred h-hhccHHHHH--HHHHHHHHHHHHHHHHHHcCC
Confidence 3 324655433 444444 4466666666554
No 103
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=28.51 E-value=4e+02 Score=27.00 Aligned_cols=9 Identities=33% Similarity=0.338 Sum_probs=5.6
Q ss_pred HHHHHhcCC
Q 009526 173 AIQILSHGV 181 (532)
Q Consensus 173 al~lL~gg~ 181 (532)
++..++||+
T Consensus 138 ~f~~l~gG~ 146 (250)
T COG2966 138 AFALLFGGG 146 (250)
T ss_pred HHHHHcCCc
Confidence 455677755
No 104
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=27.58 E-value=8.6e+02 Score=26.81 Aligned_cols=59 Identities=12% Similarity=0.016 Sum_probs=41.9
Q ss_pred HHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Q 009526 136 AELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCF 196 (532)
Q Consensus 136 ae~~r~~y~~~~~~~l~i~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~ 196 (532)
.+..++.+|++..+++-+...+++..+.++.+.+.+-=++-+++ ++...++.++.+.++
T Consensus 268 ~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--isY~~~v~i~~l~S~ 326 (439)
T PRK15433 268 HAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--LSYRTLVFILGGFSM 326 (439)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHH
Confidence 44567778998888877777888888888877777766666655 676666666555444
No 105
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=26.64 E-value=3.1e+02 Score=28.06 Aligned_cols=34 Identities=15% Similarity=0.336 Sum_probs=20.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhc
Q 009526 169 GSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENY 204 (532)
Q Consensus 169 G~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~~y 204 (532)
+++.++...++ .|.|..+++..+..++++.+.|+
T Consensus 32 s~~~a~~~~~~--~~~~~ai~~glvwgl~I~~lDR~ 65 (301)
T PF14362_consen 32 SGGYALYTVFG--GPVWAAIPFGLVWGLVIFNLDRF 65 (301)
T ss_pred HHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666 46577677776666555555554
No 106
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=26.01 E-value=1.4e+02 Score=35.88 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCC
Q 009526 102 AGYSLLWLLMWATVMGLLIQLLSARVGVATGRH 134 (532)
Q Consensus 102 ~Gy~LLWvllla~i~~~~~Q~laaRlgvvTGk~ 134 (532)
|--.++|+-+++.++. .++.++|.+.|-+
T Consensus 938 Fi~SIiwIsi~SyilV----~~at~IG~vlGIs 966 (1096)
T TIGR00927 938 FLGSIMWIAMFSYLMV----WWAHQVGETIGIS 966 (1096)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHhhhhcCCC
Confidence 3344566666665554 4566666655544
No 107
>PRK10692 hypothetical protein; Provisional
Probab=25.61 E-value=3.5e+02 Score=23.05 Aligned_cols=64 Identities=13% Similarity=-0.040 Sum_probs=41.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009526 449 GVFRIGPVLERLAWTVAALVMVINGYLLLDFFVSEVKGLLFGFLVFTGTAAYVAFIIYLITRGSDL 514 (532)
Q Consensus 449 G~~~~~~~~~il~~i~~~~i~~lni~~v~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~ 514 (532)
+.......-|++..+..++|++--.|.+.+.+++..-+- +..=..+...+++.++||+--+..+
T Consensus 2 KRk~a~~~GN~lMglGmv~Mv~gigysi~~~i~~L~Lp~--~~~~gal~~IFiGAllWL~GArigG 65 (92)
T PRK10692 2 KRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQLNLPQ--FFAHGALLSIFVGALLWLAGARVGG 65 (92)
T ss_pred cchhhHHHhhHHHHHHHHHHHHHHHHHHHHhcccCCchH--HHHhhHHHHHHHHHHHHHhcccccC
Confidence 333445567888888888888877888888886642221 1222334556788899998655443
No 108
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=24.49 E-value=9.6e+02 Score=26.32 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=50.0
Q ss_pred HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 009526 135 LAELCREEYPNWARFVLWFMAEVALIGADIQEVIGSAIAIQILSHGVLPLWAGVIITALDCFIFLFLENYGVRKLEAVFA 214 (532)
Q Consensus 135 Lae~~r~~y~~~~~~~l~i~~~la~i~~di~eviG~Aial~lL~gg~ipl~~gvlit~~~~~~~l~l~~yg~r~lE~~~~ 214 (532)
|.+..++.+|+.-..++-+...+++..+.++=+...|-=++-+++ .++...++.++.+.+++ +.+.| +|++.+
T Consensus 263 L~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~-kisY~~~v~i~~i~S~~---ian~G---l~~Ii~ 335 (427)
T PF05525_consen 263 LSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP-KISYKVWVIIFTIFSFI---IANLG---LDQIIK 335 (427)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccChHHHHHHHHHHHHH---HHHhC---HHHHHH
Confidence 445556667888777777777888888877766566666776776 57777777766654443 23443 455555
Q ss_pred HHHHHH
Q 009526 215 VLIATM 220 (532)
Q Consensus 215 ~Lv~~m 220 (532)
+.+=++
T Consensus 336 ~s~PiL 341 (427)
T PF05525_consen 336 ISVPIL 341 (427)
T ss_pred HHHHHH
Confidence 443333
No 109
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=23.93 E-value=2.5e+02 Score=22.42 Aligned_cols=32 Identities=28% Similarity=0.326 Sum_probs=21.0
Q ss_pred cCchhHH-HHHHHhhcCChhHHHHHHHHHHHhhhch
Q 009526 330 IGLVNAG-QYLQEKYGGGYLPILYIWGIGLLAAGQS 364 (532)
Q Consensus 330 ~~l~~a~-~~L~~~~G~~~~~a~~ifaigLlaAg~s 364 (532)
.+.+++. ..++..+|+ +...+.++|+++.+.-
T Consensus 31 ~~~~~~~~~l~~~p~G~---~ll~~vg~gli~~gi~ 63 (73)
T PF06724_consen 31 QGSQGALAWLLEQPFGR---WLLGAVGLGLIGYGIW 63 (73)
T ss_pred CCHHHHHHHHHhCCCcH---HHHHHHHHHHHHHHHH
Confidence 3445554 455666888 7777778887776643
No 110
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=23.37 E-value=6.9e+02 Score=24.23 Aligned_cols=70 Identities=9% Similarity=0.059 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 009526 425 VLQSIQIPFALIPLLTLVSKEQVMGVF-RIGPVLERLAWTVAALVMVINGYLLLDFFVSEVKGLLFGFLVFTGTAAY 500 (532)
Q Consensus 425 vl~s~~LPfalipll~l~n~k~iMG~~-~~~~~~~il~~i~~~~i~~lni~~v~~~~~~~~~~~~~~~~~~~~~~~y 500 (532)
++.++++|+-...+. .+-.-+++... .++..+.+++.+..++.+.++-..-... .....+++++++.|+|
T Consensus 87 ~iAs~llP~PsLVIa-YCl~mqi~~~~~~~~~gMsIvcv~~Si~ti~~~~~s~s~~-----~~ti~yIiL~iLf~~Y 157 (189)
T PF05313_consen 87 IIASLLLPFPSLVIA-YCLSMQIYNPGANNNVGMSIVCVIMSIITIIVNSVSGSSG-----AYTISYIILAILFCIY 157 (189)
T ss_pred HHHHHHcCccHHHHH-HHHHheeecCCCcceehhHHHHHHHHHHHHHHHhhhHhHH-----HHHHHHHHHHHHHHHh
Confidence 455788888443332 22223344332 3344445555554444444433221000 1122455665555555
No 111
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=23.29 E-value=3.5e+02 Score=22.97 Aligned_cols=64 Identities=8% Similarity=-0.103 Sum_probs=41.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 009526 449 GVFRIGPVLERLAWTVAALVMVINGYLLLDFFVSEVKGLLFGFLVFTGTAAYVAFIIYLITRGSDL 514 (532)
Q Consensus 449 G~~~~~~~~~il~~i~~~~i~~lni~~v~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~ 514 (532)
+.......-|++..+..+++++--.|.+.+.+++..-+-+ ..=..+...+++.++||+--+..+
T Consensus 2 KRk~a~~~GN~lMglGmv~Mv~gigysi~~~~~~L~Lp~~--~~~gal~~IFiGAllWL~GARigG 65 (89)
T PF10762_consen 2 KRKNAFLLGNVLMGLGMVVMVGGIGYSILSQIPQLGLPQF--LAHGALFSIFIGALLWLVGARIGG 65 (89)
T ss_pred CchhhHHHhhHHHHHhHHHHHHhHHHHHHHhcccCCCcHH--HHhhHHHHHHHHHHHHHhcccccC
Confidence 3334455667888888888888778888888866422211 222334556888999998655444
No 112
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=22.70 E-value=2.7e+02 Score=24.79 Aligned_cols=26 Identities=19% Similarity=0.117 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 009526 492 LVFTGTAAYVAFIIYLITRGSDLSSNC 518 (532)
Q Consensus 492 ~~~~~~~~y~~~~~~l~~~~~~~~~~~ 518 (532)
+++.+-.+|-..++|.++|..++ .+|
T Consensus 84 ~L~fIPG~Y~~~i~y~a~rg~~G-ysf 109 (115)
T PF05915_consen 84 ILCFIPGFYHTRIAYYAWRGYKG-YSF 109 (115)
T ss_pred HHHHhccHHHHHHHHHHHcCCCC-CCH
Confidence 44455567999999999998887 555
No 113
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=20.03 E-value=1.1e+03 Score=27.96 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=24.7
Q ss_pred HHHHHHHHhhhchhhhhhhhhHHHHHhhh
Q 009526 352 YIWGIGLLAAGQSSTITGTYAGQFIMGGF 380 (532)
Q Consensus 352 ~ifaigLlaAg~sStit~t~ag~~v~~gf 380 (532)
.+..+|+++++++|.+.+-.++..+.|..
T Consensus 373 ~fi~iGi~sttlfss~s~liGasrvL~al 401 (945)
T KOG1288|consen 373 PFILIGILSTTLFSSMSGLIGASRVLEAL 401 (945)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 46789999999999999988888888765
Done!