BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009529
         (532 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TBJ|A Chain A, The 1.7a Crystal Structure Of Actibind A T2 Ribonucleases
           As Antitumorigenic Agents
          Length = 237

 Score = 32.0 bits (71), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 21/116 (18%)

Query: 382 MTAIATHPNYTGL-TIVRSYSPDHYEGG---------TWNTGGSCTGKEKPLA-----VG 426
           +T+I    N T L + ++ Y PD YEG           WN  G+C    +P         
Sbjct: 75  ITSILEAQNRTELLSYMKEYWPD-YEGADEDESFWEHEWNKHGTCINTIEPSCYTDYYAQ 133

Query: 427 ELVKNGFTEVMHEKQVAGFNNAIKKA----TNKSKLRLMDITEAFGYRHDGHPGPY 478
           E V + F +V+   +      A+  A    +  +  +L DI +A    HDG+P PY
Sbjct: 134 EEVGDFFQQVVDLFKTLDSYTALSDAGITPSEDATYKLSDIEDALAAIHDGYP-PY 188


>pdb|3D3Z|A Chain A, Crystal Structure Of Actibind A T2 Rnase
          Length = 247

 Score = 31.6 bits (70), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 21/116 (18%)

Query: 382 MTAIATHPNYTGL-TIVRSYSPDHYEGG---------TWNTGGSCTGKEKPLA-----VG 426
           +T+I    N T L + ++ Y PD YEG           WN  G+C    +P         
Sbjct: 75  ITSILEAQNRTELLSYMKEYWPD-YEGADEDESFWEHEWNKHGTCINTIEPSCYTDYYAQ 133

Query: 427 ELVKNGFTEVMHEKQVAGFNNAIKKA----TNKSKLRLMDITEAFGYRHDGHPGPY 478
           E V + F +V+   +      A+  A    +  +  +L DI +A    HDG+P PY
Sbjct: 134 EEVGDFFQQVVDLFKTLDSYTALSDAGITPSEDATYKLSDIEDALAAIHDGYP-PY 188


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,680,254
Number of Sequences: 62578
Number of extensions: 718012
Number of successful extensions: 1248
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1247
Number of HSP's gapped (non-prelim): 3
length of query: 532
length of database: 14,973,337
effective HSP length: 103
effective length of query: 429
effective length of database: 8,527,803
effective search space: 3658427487
effective search space used: 3658427487
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)