BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 009529
         (532 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A5GAY2|RPOC_GEOUR DNA-directed RNA polymerase subunit beta' OS=Geobacter
           uraniireducens (strain Rf4) GN=rpoC PE=3 SV=1
          Length = 1377

 Score = 35.0 bits (79), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 359 WPDKSRPMKVNNV-DAFGISVETIM---TAIATHPNYTGLTIVRSYSPDHYEGGTWNTGG 414
           W  KS P ++ N+ D     +E ++     + T P  TG+   + +S D Y+      GG
Sbjct: 115 WFLKSLPSRIGNLMDITLKDLEKVLYFEAYVVTDPKNTGMPFAQVFSEDQYQKALEEYGG 174

Query: 415 SCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIKKATNKSKLRLMDITEAF 467
                    A+ E +K+   +V+ ++       A  +A  K   + + + EAF
Sbjct: 175 QFEAGMGAAAIRECLKSMDLDVIADQLRVEMLEATSEAKRKKTAKRLKVVEAF 227


>sp|Q9ULI3|HEG1_HUMAN Protein HEG homolog 1 OS=Homo sapiens GN=HEG1 PE=1 SV=3
          Length = 1381

 Score = 33.5 bits (75), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%)

Query: 475 PGP-YRNPDPNKITKRGPDGRPP 496
           PGP YR P+P   T+RGP GR P
Sbjct: 78  PGPSYRAPEPGAATQRGPSGRAP 100


>sp|Q9LLA7|AP32_ASAEU MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2
           PE=2 SV=1
          Length = 210

 Score = 32.7 bits (73), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 169 VASGCDLYHGSWFYDSSGPVYTNNTCPV-----ITQMQNCQGNGRPDKEYENWRWRPAEC 223
           +A  CD   G   + SSG ++  ++ P+     I + Q   GN  P   Y+N +     C
Sbjct: 10  LAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKLSGNCAP--VYDNQQ---VYC 64

Query: 224 DLPRFDGKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEVPKNRGNRR 274
           ++ R   K  ++ ++     F G+ +    M  ML L  Q+E+  N+   R
Sbjct: 65  EITRM--KNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSR 113


>sp|P13899|POLG_TMEVD Genome polyprotein OS=Theiler's murine encephalomyelitis virus
           (strain DA) PE=1 SV=1
          Length = 2301

 Score = 32.3 bits (72), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 17/125 (13%)

Query: 44  SPIGSTVRVYFT-GFDKKLDLPISPNNWSFIDNDVLPLEPSLKDAEK----SNSSSVDLS 98
           +P+ S +    + G D  L +PISP  W+   +D         +AEK    ++ +SVD  
Sbjct: 616 APVNSDILTLVSAGDDFTLRMPISPTKWAPQGSD---------NAEKGKVSNDDASVDFV 666

Query: 99  SGSRKEEEARNGSVAFSYAKDVEIGKGHLGSSENSGSIYIGSNNTNNLAKLAMPALPSPP 158
           +   K  E +   VAF Y + V IG   L   +N  S ++   N   L  L +  LPS  
Sbjct: 667 AEPVKLPENQT-RVAFFYDRAVPIGM--LRPGQNIESTFVYQENDLRLNCLLLTPLPSFC 723

Query: 159 PSNNN 163
           P + +
Sbjct: 724 PDSTS 728


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.134    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 222,904,214
Number of Sequences: 539616
Number of extensions: 10454102
Number of successful extensions: 24672
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 24662
Number of HSP's gapped (non-prelim): 21
length of query: 532
length of database: 191,569,459
effective HSP length: 122
effective length of query: 410
effective length of database: 125,736,307
effective search space: 51551885870
effective search space used: 51551885870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)