Query 009529
Match_columns 532
No_of_seqs 166 out of 782
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 14:13:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/009529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/009529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02629 powdery mildew resist 100.0 1E-109 3E-114 868.6 31.5 326 169-521 49-386 (387)
2 PF13839 PC-Esterase: GDSL/SGN 100.0 5.3E-51 1.2E-55 399.9 22.2 244 225-521 1-262 (263)
3 PF14416 PMR5N: PMR5 N termina 99.9 2.1E-27 4.6E-32 185.6 4.9 55 170-224 1-55 (55)
4 cd01842 SGNH_hydrolase_like_5 96.9 0.0023 5.1E-08 61.9 6.9 52 330-403 52-103 (183)
5 cd01841 NnaC_like NnaC (CMP-Ne 58.2 43 0.00093 30.7 7.5 71 371-467 70-140 (174)
6 cd01834 SGNH_hydrolase_like_2 57.4 5.5 0.00012 36.7 1.3 15 239-253 1-15 (191)
7 cd01829 SGNH_hydrolase_peri2 S 53.4 10 0.00022 35.7 2.4 63 327-404 58-120 (200)
8 cd01841 NnaC_like NnaC (CMP-Ne 50.5 8 0.00017 35.6 1.2 13 240-252 1-13 (174)
9 cd01836 FeeA_FeeB_like SGNH_hy 44.6 2.6E+02 0.0057 25.9 10.6 75 371-467 86-161 (191)
10 PF13472 Lipase_GDSL_2: GDSL-l 42.9 1.1E+02 0.0024 27.0 7.4 96 326-468 59-154 (179)
11 cd00229 SGNH_hydrolase SGNH_hy 42.1 2.3E+02 0.0049 24.5 10.0 16 325-340 62-77 (187)
12 PF09125 COX2-transmemb: Cytoc 41.5 40 0.00086 24.9 3.3 21 21-41 15-35 (38)
13 cd01827 sialate_O-acetylestera 38.0 1.5E+02 0.0034 27.3 7.9 33 371-404 88-120 (188)
14 cd01825 SGNH_hydrolase_peri1 S 36.5 15 0.00033 34.0 0.7 32 371-403 76-107 (189)
15 cd04506 SGNH_hydrolase_YpmR_li 35.8 1.7E+02 0.0037 27.5 7.9 29 371-400 101-129 (204)
16 cd01844 SGNH_hydrolase_like_6 35.8 18 0.0004 33.6 1.2 30 373-403 75-104 (177)
17 COG2845 Uncharacterized protei 34.9 29 0.00064 37.1 2.6 26 238-263 115-140 (354)
18 cd01832 SGNH_hydrolase_like_1 34.8 17 0.00037 33.6 0.8 70 371-468 87-156 (185)
19 cd01838 Isoamyl_acetate_hydrol 34.6 17 0.00036 33.7 0.7 33 371-404 87-119 (199)
20 cd01835 SGNH_hydrolase_like_3 33.1 20 0.00042 33.7 0.9 13 240-252 2-14 (193)
21 PF00185 OTCace: Aspartate/orn 32.8 27 0.00059 32.9 1.8 25 238-263 1-25 (158)
22 PF12273 RCR: Chitin synthesis 32.1 35 0.00075 31.1 2.4 9 18-26 1-9 (130)
23 PF12273 RCR: Chitin synthesis 31.8 27 0.00058 31.9 1.6 22 22-43 2-23 (130)
24 cd01820 PAF_acetylesterase_lik 30.2 39 0.00085 32.6 2.5 33 371-404 108-140 (214)
25 PRK10528 multifunctional acyl- 29.7 27 0.00059 33.3 1.3 15 239-253 10-24 (191)
26 cd00885 cinA Competence-damage 29.3 42 0.00091 32.2 2.5 27 498-524 141-167 (170)
27 cd01827 sialate_O-acetylestera 28.5 27 0.00058 32.5 1.0 13 241-253 2-14 (188)
28 cd01822 Lysophospholipase_L1_l 27.2 28 0.00061 31.7 0.9 27 371-400 83-109 (177)
29 cd01831 Endoglucanase_E_like E 27.1 30 0.00064 32.0 1.0 13 241-253 1-13 (169)
30 PRK03670 competence damage-ind 27.1 48 0.001 33.9 2.6 27 498-524 150-176 (252)
31 cd01833 XynB_like SGNH_hydrola 25.7 25 0.00055 31.7 0.3 31 371-402 59-89 (157)
32 PF07172 GRP: Glycine rich pro 23.4 49 0.0011 29.1 1.7 17 30-46 7-23 (95)
33 cd01839 SGNH_arylesterase_like 22.9 40 0.00086 32.1 1.0 32 371-402 100-135 (208)
34 PF12026 DUF3513: Domain of un 22.5 8.6 0.00019 38.5 -3.6 18 236-253 131-148 (210)
35 cd04501 SGNH_hydrolase_like_4 21.9 42 0.00091 31.1 1.0 29 371-402 78-106 (183)
36 cd01832 SGNH_hydrolase_like_1 21.2 5.3E+02 0.011 23.6 8.2 12 241-252 1-12 (185)
No 1
>PLN02629 powdery mildew resistance 5
Probab=100.00 E-value=1.2e-109 Score=868.62 Aligned_cols=326 Identities=31% Similarity=0.590 Sum_probs=271.3
Q ss_pred CCCCCcCccccEeeCCCCCCCCCCCCC-CcccccccccCCCCCCCCceeeecCCCCCCCCCCHHHHHHHHcCCcEEEEec
Q 009529 169 VASGCDLYHGSWFYDSSGPVYTNNTCP-VITQMQNCQGNGRPDKEYENWRWRPAECDLPRFDGKKFLELMRGKTLAFIGD 247 (532)
Q Consensus 169 ~~~~CDl~~G~WV~D~~~PlY~~~~Cp-~i~~~~nC~~nGRPD~~Yl~WRWQP~~C~LprFD~~~fLe~LRgKrl~FVGD 247 (532)
..+.||+|+|+||+|+++|||++++|| ||+++|||++|||||++|++|||||++|+||||||.+||++|||||||||||
T Consensus 49 ~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FVGD 128 (387)
T PLN02629 49 NQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFVGD 128 (387)
T ss_pred CccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEecc
Confidence 467899999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhhhcccccCCc----CccceeeEEEeecCEEEEEEEeccceeccCCCCCCCCCCceeEeecCCCchhh
Q 009529 248 SVARNQMESMLCLLWQVEVPKNR----GNRRMQRWYFKSTSVTIVRIWSSWLVKKINEPFDFAPAGVDKLHLDAPDENFM 323 (532)
Q Consensus 248 SL~Rnq~eSLlCLL~~~~~P~~~----~~~~~~r~~f~s~nvTV~f~WSPFLV~~~~~~~~~a~~g~~~L~LD~~d~~~a 323 (532)
||+|||||||+|||+++ +|... ....+.+|+|++||+||+|||+||||+.+.+. +...|+||+++. ++
T Consensus 129 SL~RNQ~eSLvClL~~~-~p~~~~~~~~~~~~~~~~F~~yN~TV~~ywspfLV~~~~~~------~~~~l~LD~id~-~a 200 (387)
T PLN02629 129 SLGRNQWESLICLISSS-VPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVDIDAVQ------GKRVLKLEEISG-NA 200 (387)
T ss_pred ccchhHHHHHHHHhhcc-CCCCceeeecCCceEEEEeccCCEEEEEEecceEEeeecCC------CceeEEecCcch-hh
Confidence 99999999999999886 44321 12346789999999999999999999976432 346799999875 58
Q ss_pred hcCCCCcEEEEecCcccccceeEEecceEecceecCCCCCC-CCccchhhHHHHHHHHHHHHHHhCCCC-cceEEEEEec
Q 009529 324 EFVPSFDVIVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSR-PMKVNNVDAFGISVETIMTAIATHPNY-TGLTIVRSYS 401 (532)
Q Consensus 324 ~~~~~~DVLVfNTGhWw~r~~~~~~~g~~vg~~~~~~~~~~-~~~~~~~~Ay~~al~T~~~wi~~~~~~-~~~vFfRT~S 401 (532)
+.|+++|||||||||||.+++.+. |++.+ ..+.. ..+|+..+||++||+||++||+.+.+. +++|||||+|
T Consensus 201 ~~w~~~DvlVfntghWw~~~~~~~------~~~~~-~~g~~~~~~~~~~~A~r~al~T~~~wv~~~~~~~kt~vffrT~S 273 (387)
T PLN02629 201 NAWRDADVLIFNTGHWWSHQGSLQ------GWDYI-ESGGTYYQDMDRLVALEKALRTWAYWVDTNVDRSRTRVFFQSIS 273 (387)
T ss_pred hhhccCCEEEEeCccccCCCCeeE------Eeeee-ccCCccccCccHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEecC
Confidence 999999999999999999986543 33322 22212 236788899999999999999887654 7789999999
Q ss_pred CCCCCCCCCCCCC-----CCCCcceeCccCccccCCchhhhHHHHHHHHHHHHHHhcCCCceEEeecccccccCCCCCCC
Q 009529 402 PDHYEGGTWNTGG-----SCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIKKATNKSKLRLMDITEAFGYRHDGHPG 476 (532)
Q Consensus 402 P~Hfegg~Wn~GG-----~C~~~T~Pl~~ge~~~~~~~~~m~~~qv~e~~~al~~a~~~~~V~LLDIT~LS~lR~DGHPS 476 (532)
|+||+||+||+|| +|+++|+|+..+++ ..++..+|. +++++. +.++.+|+|||||+||+||||||||
T Consensus 274 P~Hfe~g~Wn~gg~~~~~~C~~et~P~~~~~~-~~~~~~~~~--~ve~v~-----~~~~~~v~lLDIT~ls~lR~DgHPs 345 (387)
T PLN02629 274 PTHYNPSEWSAGASTTTKNCYGETTPMSGMTY-PGAYPDQMR--VVDEVI-----RGMHNPAYLLDITLLSELRKDGHPS 345 (387)
T ss_pred cccccCCCcCCCCCCCCCCCccCCccCcCccc-cCcchHHHH--HHHHHH-----HhcCCceEEEechhhhhcCCCCCcc
Confidence 9999999999874 69999999985544 344444443 344432 2356899999999999999999999
Q ss_pred CCCCCCCCcccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHHH
Q 009529 477 PYRNPDPNKITKRGPDGRPPPQDCLHWCMPGPVDTWNELVLEIIR 521 (532)
Q Consensus 477 ~Y~~~~~~~~t~~g~~~~~~~~DClHWCLPGvpDtWNeLLya~L~ 521 (532)
+|++.. +.++...+..++||+||||||||||||||||++|+
T Consensus 346 ~Y~~~~----~~~~~~~p~~~~DC~HWCLPGvpDTWNelL~a~L~ 386 (387)
T PLN02629 346 IYSGDL----SPSQRANPDRSADCSHWCLPGLPDTWNQLFYTALF 386 (387)
T ss_pred cccCCC----chhhccCCCCCCCcccccCCCCCccHHHHHHHHHh
Confidence 997542 22233333457999999999999999999999986
No 2
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=100.00 E-value=5.3e-51 Score=399.88 Aligned_cols=244 Identities=39% Similarity=0.733 Sum_probs=190.4
Q ss_pred CCCCCHHHHHHHHcCCcEEEEechhhHHHHHHHHhhhhcccc-----cCCcC---ccceeeEEEeecCEEEEEEEeccce
Q 009529 225 LPRFDGKKFLELMRGKTLAFIGDSVARNQMESMLCLLWQVEV-----PKNRG---NRRMQRWYFKSTSVTIVRIWSSWLV 296 (532)
Q Consensus 225 LprFD~~~fLe~LRgKrl~FVGDSL~Rnq~eSLlCLL~~~~~-----P~~~~---~~~~~r~~f~s~nvTV~f~WSPFLV 296 (532)
|++||+.++|++||||+|+|||||++||||+||+|+|.+... +.... ......+.|+.+|+||.|+|+|||+
T Consensus 1 ~~~~d~~~cL~~lr~k~i~fiGDS~~Rq~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~p~l~ 80 (263)
T PF13839_consen 1 LPRFDARECLQRLRNKRIVFIGDSTTRQQYESLVCLLGPEVPSWQESPHSGIEFPNHRNFRYNFPDYNVTLSFYWDPFLV 80 (263)
T ss_pred CChhhHHHHHHHccCCEEEEEechhhHHHHHHHHHHHhccccccccccccccccccCCceEEeecCCCeEEEEecccccc
Confidence 689999999999999999999999999999999999988643 11110 1124567789999999999999999
Q ss_pred eccCCCCCCCCCCceeEeecCCCchhhhcCC----CCcEEEEecCcccccceeEEecceEecceecCCCCCCCCccchhh
Q 009529 297 KKINEPFDFAPAGVDKLHLDAPDENFMEFVP----SFDVIVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSRPMKVNNVD 372 (532)
Q Consensus 297 ~~~~~~~~~a~~g~~~L~LD~~d~~~a~~~~----~~DVLVfNTGhWw~r~~~~~~~g~~vg~~~~~~~~~~~~~~~~~~ 372 (532)
+. +|.++..++..|. .+||||||+|+||.+.+.++.++ . . .+++..+
T Consensus 81 ~~----------------l~~~~~~~~~~~~~~~~~pdvvV~nsG~W~~~~~~~~~~~-----------~-~-~~~~~~~ 131 (263)
T PF13839_consen 81 DQ----------------LDSIDEEIANNWPTSGARPDVVVINSGLWYLRRSGFIEWG-----------D-N-KEINPLE 131 (263)
T ss_pred cc----------------ccccchhhhccccccccCCCEEEEEcchhhhhcchhcccC-----------C-C-cCcchHH
Confidence 64 2333323344454 89999999999999886655431 0 1 2456789
Q ss_pred HHHHHHHHHHHHHHhCC-CC--cceEEEEEecCCCCCCCCCCCCCCCCCcceeCccCccccCCchhhhHHHHHHHHHHHH
Q 009529 373 AFGISVETIMTAIATHP-NY--TGLTIVRSYSPDHYEGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAI 449 (532)
Q Consensus 373 Ay~~al~T~~~wi~~~~-~~--~~~vFfRT~SP~Hfegg~Wn~GG~C~~~T~Pl~~ge~~~~~~~~~m~~~qv~e~~~al 449 (532)
+|+..++++++++.... .. +++||||+++|.||++++|++||+|.... .. .+...++.++++++
T Consensus 132 ~y~~~l~~~~~~~~~~~~~~~~~~~v~~r~~~P~h~~~~~~~~gg~c~~~~---------~~----~~~~~~~~~~~~~~ 198 (263)
T PF13839_consen 132 AYRNRLRTLADWVRRLLDRSKPPTRVFWRTTSPVHFEGGDWNSGGSCNPPR---------RE----EITNEQIDELNEAL 198 (263)
T ss_pred HHHHHHHHHHHHHHhhhccccccceEEEEecCCccccccccccCCCcCccc---------cc----CCCHHHHHHHHHHH
Confidence 99999999999998654 33 37899999999999999999999998110 01 12223445556665
Q ss_pred HHhc-CCCceEEeec-ccccccCC-CCCCCCCCCCCCCcccCCCCCCCCCCCCcccccCCCchhHHHHHHHHHHH
Q 009529 450 KKAT-NKSKLRLMDI-TEAFGYRH-DGHPGPYRNPDPNKITKRGPDGRPPPQDCLHWCMPGPVDTWNELVLEIIR 521 (532)
Q Consensus 450 ~~a~-~~~~V~LLDI-T~LS~lR~-DGHPS~Y~~~~~~~~t~~g~~~~~~~~DClHWCLPGvpDtWNeLLya~L~ 521 (532)
..+. ...++++||| |.|+.+|+ ||||++|++..+. ..+||+|||+|||+|+||+|||++|+
T Consensus 199 ~~~~~~~~~~~~ldi~~~~~~~r~~d~H~~~~~~~~~~-----------~~~Dc~Hw~~p~v~d~~~~lL~~~lc 262 (263)
T PF13839_consen 199 REALKKNSRVHLLDIFTMLSSFRPDDAHPGIYRNQWPR-----------QPQDCLHWCLPGVIDTWNELLLNLLC 262 (263)
T ss_pred HHHhhcCCCceeeeecchhhhccccccCcccccCCCCC-----------CCCCCcCcCCCcHHHHHHHHHHHHhh
Confidence 4443 7889999999 99999999 9999999875321 25899999999999999999999986
No 3
>PF14416 PMR5N: PMR5 N terminal Domain
Probab=99.94 E-value=2.1e-27 Score=185.65 Aligned_cols=55 Identities=53% Similarity=1.194 Sum_probs=53.4
Q ss_pred CCCCcCccccEeeCCCCCCCCCCCCCCcccccccccCCCCCCCCceeeecCCCCC
Q 009529 170 ASGCDLYHGSWFYDSSGPVYTNNTCPVITQMQNCQGNGRPDKEYENWRWRPAECD 224 (532)
Q Consensus 170 ~~~CDl~~G~WV~D~~~PlY~~~~Cp~i~~~~nC~~nGRPD~~Yl~WRWQP~~C~ 224 (532)
+++||||+|+||+|+++|||++++||||+++|||++|||||++|++|||||++|+
T Consensus 1 e~~Cd~~~G~WV~D~~~PlY~~~~Cp~i~~~~nC~~nGRpD~~y~~wRWqP~~Cd 55 (55)
T PF14416_consen 1 EKRCDYFDGRWVPDPSYPLYTNSTCPFIDEGFNCQKNGRPDSDYLKWRWQPRGCD 55 (55)
T ss_pred CCccCcccCEEEeCCCCCccCCCCCCcCCCccchhhcCCCCCccceeeecCCCCC
Confidence 4689999999999999999999999999999999999999999999999999996
No 4
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=96.91 E-value=0.0023 Score=61.95 Aligned_cols=52 Identities=13% Similarity=0.312 Sum_probs=38.6
Q ss_pred cEEEEecCcccccceeEEecceEecceecCCCCCCCCccchhhHHHHHHHHHHHHHHhCCCCcceEEEEEecCC
Q 009529 330 DVIVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSRPMKVNNVDAFGISVETIMTAIATHPNYTGLTIVRSYSPD 403 (532)
Q Consensus 330 DVLVfNTGhWw~r~~~~~~~g~~vg~~~~~~~~~~~~~~~~~~Ay~~al~T~~~wi~~~~~~~~~vFfRT~SP~ 403 (532)
||||||+|.|=.. .|.+ +.++.|++-|++.+..+++.-...++++|.|++|-
T Consensus 52 DVIi~Ns~LWDl~---------------ry~~-------~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv 103 (183)
T cd01842 52 DLVIMNSCLWDLS---------------RYQR-------NSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPV 103 (183)
T ss_pred eEEEEecceeccc---------------ccCC-------CCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCC
Confidence 9999999999211 0111 23578999999999888874444568899999997
No 5
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=58.19 E-value=43 Score=30.72 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCcceEEEEEecCCCCCCCCCCCCCCCCCcceeCccCccccCCchhhhHHHHHHHHHHHHH
Q 009529 371 VDAFGISVETIMTAIATHPNYTGLTIVRSYSPDHYEGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIK 450 (532)
Q Consensus 371 ~~Ay~~al~T~~~wi~~~~~~~~~vFfRT~SP~Hfegg~Wn~GG~C~~~T~Pl~~ge~~~~~~~~~m~~~qv~e~~~al~ 450 (532)
.+.|+..+++.++.+.+.. +...+|+-++.|...... +. . . ....+.+++++++
T Consensus 70 ~~~~~~~~~~l~~~~~~~~-p~~~vi~~~~~p~~~~~~-------~~----~----------~----~~~~~~~~n~~l~ 123 (174)
T cd01841 70 SNQFIKWYRDIIEQIREEF-PNTKIYLLSVLPVLEEDE-------IK----T----------R----SNTRIQRLNDAIK 123 (174)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCEEEEEeeCCcCcccc-------cc----c----------C----CHHHHHHHHHHHH
Confidence 4667888888887776531 234578888877654210 00 0 0 0113445666664
Q ss_pred HhcCCCceEEeeccccc
Q 009529 451 KATNKSKLRLMDITEAF 467 (532)
Q Consensus 451 ~a~~~~~V~LLDIT~LS 467 (532)
.......+.++|+..+.
T Consensus 124 ~~a~~~~~~~id~~~~~ 140 (174)
T cd01841 124 ELAPELGVTFIDLNDVL 140 (174)
T ss_pred HHHHHCCCEEEEcHHHH
Confidence 32233459999999865
No 6
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=57.41 E-value=5.5 Score=36.73 Aligned_cols=15 Identities=33% Similarity=0.767 Sum_probs=13.7
Q ss_pred CCcEEEEechhhHHH
Q 009529 239 GKTLAFIGDSVARNQ 253 (532)
Q Consensus 239 gKrl~FVGDSL~Rnq 253 (532)
|+||+|+|||++...
T Consensus 1 ~~~v~~~GDSit~g~ 15 (191)
T cd01834 1 GDRIVFIGNSITDRG 15 (191)
T ss_pred CCEEEEeCCChhhcc
Confidence 789999999999875
No 7
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.38 E-value=10 Score=35.72 Aligned_cols=63 Identities=10% Similarity=0.064 Sum_probs=33.7
Q ss_pred CCCcEEEEecCcccccceeEEecceEecceecCCCCCCCCccchhhHHHHHHHHHHHHHHhCCCCcceEEEEEecCCC
Q 009529 327 PSFDVIVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSRPMKVNNVDAFGISVETIMTAIATHPNYTGLTIVRSYSPDH 404 (532)
Q Consensus 327 ~~~DVLVfNTGhWw~r~~~~~~~g~~vg~~~~~~~~~~~~~~~~~~Ay~~al~T~~~wi~~~~~~~~~vFfRT~SP~H 404 (532)
..+|+||+..|.+=... ...+ .. +.+ .. .-.-.+.|+..++.+++.+... ...|++-+..|.+
T Consensus 58 ~~pd~vii~~G~ND~~~---~~~~----~~-~~~-~~---~~~~~~~~~~~l~~lv~~~~~~---~~~vili~~pp~~ 120 (200)
T cd01829 58 EKPDVVVVFLGANDRQD---IRDG----DG-YLK-FG---SPEWEEEYRQRIDELLNVARAK---GVPVIWVGLPAMR 120 (200)
T ss_pred CCCCEEEEEecCCCCcc---ccCC----Cc-eee-cC---ChhHHHHHHHHHHHHHHHHHhC---CCcEEEEcCCCCC
Confidence 47899999999873211 0000 00 000 00 0012467888888887776632 3357777766654
No 8
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=50.51 E-value=8 Score=35.62 Aligned_cols=13 Identities=46% Similarity=0.805 Sum_probs=11.4
Q ss_pred CcEEEEechhhHH
Q 009529 240 KTLAFIGDSVARN 252 (532)
Q Consensus 240 Krl~FVGDSL~Rn 252 (532)
|+|+|+|||++..
T Consensus 1 ~~iv~~GdS~t~~ 13 (174)
T cd01841 1 KNIVFIGDSLFEG 13 (174)
T ss_pred CCEEEEcchhhhc
Confidence 7899999999963
No 9
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=44.64 E-value=2.6e+02 Score=25.90 Aligned_cols=75 Identities=11% Similarity=0.184 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHHhCCCCcceEEEEEecCCCCCCCCCCCCCCCCCcceeCccCccccCCchhhhHHHHHHHHHHHHH
Q 009529 371 VDAFGISVETIMTAIATHPNYTGLTIVRSYSPDHYEGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIK 450 (532)
Q Consensus 371 ~~Ay~~al~T~~~wi~~~~~~~~~vFfRT~SP~Hfegg~Wn~GG~C~~~T~Pl~~ge~~~~~~~~~m~~~qv~e~~~al~ 450 (532)
.+.|+..++.+++.+.+. .+...+|+-+..|-.... ..|-. .. ........+++++++
T Consensus 86 ~~~~~~~l~~li~~i~~~-~~~~~iiv~~~p~~~~~~------------~~~~~--------~~-~~~~~~~~~~n~~~~ 143 (191)
T cd01836 86 IARWRKQLAELVDALRAK-FPGARVVVTAVPPLGRFP------------ALPQP--------LR-WLLGRRARLLNRALE 143 (191)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCCEEEEECCCCcccCC------------CCcHH--------HH-HHHHHHHHHHHHHHH
Confidence 467888888888877652 223457776665433110 01100 00 111223445666665
Q ss_pred HhcCC-CceEEeeccccc
Q 009529 451 KATNK-SKLRLMDITEAF 467 (532)
Q Consensus 451 ~a~~~-~~V~LLDIT~LS 467 (532)
..... ..+.++|+....
T Consensus 144 ~~a~~~~~~~~id~~~~~ 161 (191)
T cd01836 144 RLASEAPRVTLLPATGPL 161 (191)
T ss_pred HHHhcCCCeEEEecCCcc
Confidence 32233 489999998764
No 10
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=42.92 E-value=1.1e+02 Score=26.99 Aligned_cols=96 Identities=19% Similarity=0.338 Sum_probs=51.3
Q ss_pred CCCCcEEEEecCcccccceeEEecceEecceecCCCCCCCCccchhhHHHHHHHHHHHHHHhCCCCcceEEEEEecCCCC
Q 009529 326 VPSFDVIVLSSGHWFAKQSVYILNNEIVGGQLWWPDKSRPMKVNNVDAFGISVETIMTAIATHPNYTGLTIVRSYSPDHY 405 (532)
Q Consensus 326 ~~~~DVLVfNTGhWw~r~~~~~~~g~~vg~~~~~~~~~~~~~~~~~~Ay~~al~T~~~wi~~~~~~~~~vFfRT~SP~Hf 405 (532)
...+|+|||..|.= + +.. + .. .....+.|...|++.++.+... +.+++-++.|...
T Consensus 59 ~~~~d~vvi~~G~N----------D-~~~-----~--~~--~~~~~~~~~~~l~~~i~~~~~~----~~vi~~~~~~~~~ 114 (179)
T PF13472_consen 59 DPKPDLVVISFGTN----------D-VLN-----G--DE--NDTSPEQYEQNLRRIIEQLRPH----GPVILVSPPPRGP 114 (179)
T ss_dssp GTTCSEEEEE--HH----------H-HCT-----C--TT--CHHHHHHHHHHHHHHHHHHHTT----SEEEEEE-SCSSS
T ss_pred cCCCCEEEEEcccc----------c-ccc-----c--cc--ccccHHHHHHHHHHHHHhhccc----CcEEEecCCCccc
Confidence 46889999998751 0 000 0 00 1123567888888887776543 2677778877776
Q ss_pred CCCCCCCCCCCCCcceeCccCccccCCchhhhHHHHHHHHHHHHHHhcCCCceEEeecccccc
Q 009529 406 EGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIKKATNKSKLRLMDITEAFG 468 (532)
Q Consensus 406 egg~Wn~GG~C~~~T~Pl~~ge~~~~~~~~~m~~~qv~e~~~al~~a~~~~~V~LLDIT~LS~ 468 (532)
....+. . .........+++++++......+.++|+.....
T Consensus 115 ~~~~~~-----~------------------~~~~~~~~~~~~~~~~~a~~~~~~~id~~~~~~ 154 (179)
T PF13472_consen 115 DPRDPK-----Q------------------DYLNRRIDRYNQAIRELAKKYGVPFIDLFDAFD 154 (179)
T ss_dssp STTTTH-----T------------------TCHHHHHHHHHHHHHHHHHHCTEEEEEHHHHHB
T ss_pred cccccc-----c------------------hhhhhhHHHHHHHHHHHHHHcCCEEEECHHHHc
Confidence 443221 0 001122334455544322334899999998854
No 11
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=42.05 E-value=2.3e+02 Score=24.47 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=12.9
Q ss_pred cCCCCcEEEEecCccc
Q 009529 325 FVPSFDVIVLSSGHWF 340 (532)
Q Consensus 325 ~~~~~DVLVfNTGhWw 340 (532)
....+|+||+..|..-
T Consensus 62 ~~~~~d~vil~~G~ND 77 (187)
T cd00229 62 LKDKPDLVIIELGTND 77 (187)
T ss_pred ccCCCCEEEEEecccc
Confidence 3568999999998864
No 12
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=41.46 E-value=40 Score=24.92 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 009529 21 SSILVSVGGLAMFLVFASLLL 41 (532)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~ 41 (532)
.|+++++.-+++|+++++..+
T Consensus 15 ~Wi~F~l~mi~vFi~li~ytl 35 (38)
T PF09125_consen 15 GWIAFALAMILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888887655
No 13
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=38.02 E-value=1.5e+02 Score=27.31 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHHHHHhCCCCcceEEEEEecCCC
Q 009529 371 VDAFGISVETIMTAIATHPNYTGLTIVRSYSPDH 404 (532)
Q Consensus 371 ~~Ay~~al~T~~~wi~~~~~~~~~vFfRT~SP~H 404 (532)
.+.|+..++..++.+.+.. +...+++.+..|..
T Consensus 88 ~~~~~~~l~~li~~i~~~~-~~~~iil~t~~p~~ 120 (188)
T cd01827 88 KDDFKKDYETMIDSFQALP-SKPKIYICYPIPAY 120 (188)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCeEEEEeCCccc
Confidence 4678888888888776532 23356777766654
No 14
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.54 E-value=15 Score=33.97 Aligned_cols=32 Identities=0% Similarity=0.007 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCcceEEEEEecCC
Q 009529 371 VDAFGISVETIMTAIATHPNYTGLTIVRSYSPD 403 (532)
Q Consensus 371 ~~Ay~~al~T~~~wi~~~~~~~~~vFfRT~SP~ 403 (532)
.+.|+..++..++.+.+. ++...+++.+..|.
T Consensus 76 ~~~~~~~~~~li~~i~~~-~~~~~iv~~~~~~~ 107 (189)
T cd01825 76 ASEYRQQLREFIKRLRQI-LPNASILLVGPPDS 107 (189)
T ss_pred HHHHHHHHHHHHHHHHHH-CCCCeEEEEcCCch
Confidence 467888899998888764 22345777777664
No 15
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=35.83 E-value=1.7e+02 Score=27.53 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCcceEEEEEe
Q 009529 371 VDAFGISVETIMTAIATHPNYTGLTIVRSY 400 (532)
Q Consensus 371 ~~Ay~~al~T~~~wi~~~~~~~~~vFfRT~ 400 (532)
.+.|+..++.+++.+.+.. ++..+++-++
T Consensus 101 ~~~~~~~l~~~i~~ir~~~-p~~~Ivv~~~ 129 (204)
T cd04506 101 EETYQNNLKKIFKEIRKLN-PDAPIFLVGL 129 (204)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCeEEEEec
Confidence 4678888999888887632 2234554443
No 16
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.79 E-value=18 Score=33.65 Aligned_cols=30 Identities=3% Similarity=-0.104 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhCCCCcceEEEEEecCC
Q 009529 373 AFGISVETIMTAIATHPNYTGLTIVRSYSPD 403 (532)
Q Consensus 373 Ay~~al~T~~~wi~~~~~~~~~vFfRT~SP~ 403 (532)
.|...++..++.+.+.. +.+.+++-+..|.
T Consensus 75 ~~~~~~~~~i~~i~~~~-p~~~iil~~~~~~ 104 (177)
T cd01844 75 MVRERLGPLVKGLRETH-PDTPILLVSPRYC 104 (177)
T ss_pred HHHHHHHHHHHHHHHHC-cCCCEEEEecCCC
Confidence 56777777777776532 2334666665443
No 17
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.94 E-value=29 Score=37.06 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=22.4
Q ss_pred cCCcEEEEechhhHHHHHHHHhhhhc
Q 009529 238 RGKTLAFIGDSVARNQMESMLCLLWQ 263 (532)
Q Consensus 238 RgKrl~FVGDSL~Rnq~eSLlCLL~~ 263 (532)
.++++.|||||+++..-+.|.--|.+
T Consensus 115 ~a~kvLvvGDslm~gla~gl~~al~t 140 (354)
T COG2845 115 DADKVLVVGDSLMQGLAEGLDKALAT 140 (354)
T ss_pred CCCEEEEechHHhhhhHHHHHHHhcc
Confidence 46889999999999998888888754
No 18
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=34.76 E-value=17 Score=33.59 Aligned_cols=70 Identities=13% Similarity=0.168 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCcceEEEEEecCCCCCCCCCCCCCCCCCcceeCccCccccCCchhhhHHHHHHHHHHHHH
Q 009529 371 VDAFGISVETIMTAIATHPNYTGLTIVRSYSPDHYEGGTWNTGGSCTGKEKPLAVGELVKNGFTEVMHEKQVAGFNNAIK 450 (532)
Q Consensus 371 ~~Ay~~al~T~~~wi~~~~~~~~~vFfRT~SP~Hfegg~Wn~GG~C~~~T~Pl~~ge~~~~~~~~~m~~~qv~e~~~al~ 450 (532)
.+.|+..++.+++.+.. + ...+++-+..|.. ...|+.. . ....+++++++++
T Consensus 87 ~~~~~~~~~~~i~~i~~-~--~~~vil~~~~~~~--------------~~~~~~~----------~-~~~~~~~~n~~l~ 138 (185)
T cd01832 87 PDTYRADLEEAVRRLRA-A--GARVVVFTIPDPA--------------VLEPFRR----------R-VRARLAAYNAVIR 138 (185)
T ss_pred HHHHHHHHHHHHHHHHh-C--CCEEEEecCCCcc--------------ccchhHH----------H-HHHHHHHHHHHHH
Confidence 46788888888887772 2 3356666654430 0123211 0 1123455666665
Q ss_pred HhcCCCceEEeecccccc
Q 009529 451 KATNKSKLRLMDITEAFG 468 (532)
Q Consensus 451 ~a~~~~~V~LLDIT~LS~ 468 (532)
.......+.++|+..+..
T Consensus 139 ~~a~~~~v~~vd~~~~~~ 156 (185)
T cd01832 139 AVAARYGAVHVDLWEHPE 156 (185)
T ss_pred HHHHHcCCEEEecccCcc
Confidence 333345799999987654
No 19
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=34.64 E-value=17 Score=33.74 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCcceEEEEEecCCC
Q 009529 371 VDAFGISVETIMTAIATHPNYTGLTIVRSYSPDH 404 (532)
Q Consensus 371 ~~Ay~~al~T~~~wi~~~~~~~~~vFfRT~SP~H 404 (532)
.+.|+..++.+++.+.+. .+...+++-+..|..
T Consensus 87 ~~~~~~~~~~~i~~~~~~-~~~~~ii~~t~~~~~ 119 (199)
T cd01838 87 LDEYKENLRKIVSHLKSL-SPKTKVILITPPPVD 119 (199)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCCeEEEeCCCCCC
Confidence 577888888888877763 123457777766643
No 20
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.07 E-value=20 Score=33.68 Aligned_cols=13 Identities=38% Similarity=0.600 Sum_probs=11.5
Q ss_pred CcEEEEechhhHH
Q 009529 240 KTLAFIGDSVARN 252 (532)
Q Consensus 240 Krl~FVGDSL~Rn 252 (532)
+||+|+|||++..
T Consensus 2 ~~i~~lGDSit~G 14 (193)
T cd01835 2 KRLIVVGDSLVYG 14 (193)
T ss_pred cEEEEEcCccccC
Confidence 6899999999964
No 21
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=32.78 E-value=27 Score=32.91 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=21.2
Q ss_pred cCCcEEEEechhhHHHHHHHHhhhhc
Q 009529 238 RGKTLAFIGDSVARNQMESMLCLLWQ 263 (532)
Q Consensus 238 RgKrl~FVGDSL~Rnq~eSLlCLL~~ 263 (532)
.|++|+|||| ..-|.-.|++.+|..
T Consensus 1 ~gl~i~~vGD-~~~rv~~Sl~~~~~~ 25 (158)
T PF00185_consen 1 KGLKIAYVGD-GHNRVAHSLIELLAK 25 (158)
T ss_dssp TTEEEEEESS-TTSHHHHHHHHHHHH
T ss_pred CCCEEEEECC-CCChHHHHHHHHHHH
Confidence 4899999999 656789999999854
No 22
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=32.15 E-value=35 Score=31.12 Aligned_cols=9 Identities=11% Similarity=0.061 Sum_probs=3.9
Q ss_pred chhhHHHHH
Q 009529 18 RSLSSILVS 26 (532)
Q Consensus 18 ~~~~~~~~~ 26 (532)
||+..+++.
T Consensus 1 RW~l~~iii 9 (130)
T PF12273_consen 1 RWVLFAIII 9 (130)
T ss_pred CeeeHHHHH
Confidence 454444433
No 23
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=31.81 E-value=27 Score=31.85 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 009529 22 SILVSVGGLAMFLVFASLLLVS 43 (532)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~ 43 (532)
|++++|+.+++||+|+++++.+
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777766544
No 24
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=30.21 E-value=39 Score=32.57 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHhCCCCcceEEEEEecCCC
Q 009529 371 VDAFGISVETIMTAIATHPNYTGLTIVRSYSPDH 404 (532)
Q Consensus 371 ~~Ay~~al~T~~~wi~~~~~~~~~vFfRT~SP~H 404 (532)
.+.|...++.+++.+.+. .+...+++-++.|..
T Consensus 108 ~~~~~~~l~~ii~~l~~~-~P~~~Iil~~~~p~~ 140 (214)
T cd01820 108 AEEIAEGILAIVEEIREK-LPNAKILLLGLLPRG 140 (214)
T ss_pred HHHHHHHHHHHHHHHHHH-CCCCeEEEEeccCCC
Confidence 456677777777776543 122346666766643
No 25
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=29.72 E-value=27 Score=33.30 Aligned_cols=15 Identities=33% Similarity=0.547 Sum_probs=12.8
Q ss_pred CCcEEEEechhhHHH
Q 009529 239 GKTLAFIGDSVARNQ 253 (532)
Q Consensus 239 gKrl~FVGDSL~Rnq 253 (532)
+.+|+|+|||++...
T Consensus 10 ~~~iv~~GDSit~G~ 24 (191)
T PRK10528 10 ADTLLILGDSLSAGY 24 (191)
T ss_pred CCEEEEEeCchhhcC
Confidence 678999999999653
No 26
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=29.26 E-value=42 Score=32.16 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=21.9
Q ss_pred CCcccccCCCchhHHHHHHHHHHHhhh
Q 009529 498 QDCLHWCMPGPVDTWNELVLEIIRREF 524 (532)
Q Consensus 498 ~DClHWCLPGvpDtWNeLLya~L~~e~ 524 (532)
++|..+||||||..-..||-+.+...+
T Consensus 141 ~~~~i~~lPG~P~e~~~m~~~~~~~~l 167 (170)
T cd00885 141 NGKNVFLLPGVPSEMKPMLEEEVLPRL 167 (170)
T ss_pred CCeEEEEECCChHHHHHHHHHHHHHHH
Confidence 468999999999999988886665443
No 27
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.51 E-value=27 Score=32.46 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=10.8
Q ss_pred cEEEEechhhHHH
Q 009529 241 TLAFIGDSVARNQ 253 (532)
Q Consensus 241 rl~FVGDSL~Rnq 253 (532)
||+|+|||++..-
T Consensus 2 ~i~~~GDSit~G~ 14 (188)
T cd01827 2 KVACVGNSITEGA 14 (188)
T ss_pred eEEEEeccccccc
Confidence 6999999997643
No 28
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=27.20 E-value=28 Score=31.74 Aligned_cols=27 Identities=4% Similarity=0.112 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHhCCCCcceEEEEEe
Q 009529 371 VDAFGISVETIMTAIATHPNYTGLTIVRSY 400 (532)
Q Consensus 371 ~~Ay~~al~T~~~wi~~~~~~~~~vFfRT~ 400 (532)
.+.|+..++.+++.+.+. + ..+++-++
T Consensus 83 ~~~~~~~l~~li~~~~~~-~--~~vil~~~ 109 (177)
T cd01822 83 PDQTRANLRQMIETAQAR-G--APVLLVGM 109 (177)
T ss_pred HHHHHHHHHHHHHHHHHC-C--CeEEEEec
Confidence 456888888888877664 2 24555554
No 29
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=27.13 E-value=30 Score=31.99 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=10.8
Q ss_pred cEEEEechhhHHH
Q 009529 241 TLAFIGDSVARNQ 253 (532)
Q Consensus 241 rl~FVGDSL~Rnq 253 (532)
+|+|+|||++...
T Consensus 1 ~i~~iGDSit~G~ 13 (169)
T cd01831 1 KIEFIGDSITCGY 13 (169)
T ss_pred CEEEEeccccccC
Confidence 5899999999654
No 30
>PRK03670 competence damage-inducible protein A; Provisional
Probab=27.10 E-value=48 Score=33.94 Aligned_cols=27 Identities=7% Similarity=0.191 Sum_probs=22.1
Q ss_pred CCcccccCCCchhHHHHHHHHHHHhhh
Q 009529 498 QDCLHWCMPGPVDTWNELVLEIIRREF 524 (532)
Q Consensus 498 ~DClHWCLPGvpDtWNeLLya~L~~e~ 524 (532)
..|.++||||||-.+..||-..++..+
T Consensus 150 ~~~~v~~lPGvP~e~~~M~~~~v~p~l 176 (252)
T PRK03670 150 KGTKIFVLPGMPREMKAMLEKEVLPRL 176 (252)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHHHhh
Confidence 468999999999999999987665444
No 31
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=25.72 E-value=25 Score=31.70 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHhCCCCcceEEEEEecC
Q 009529 371 VDAFGISVETIMTAIATHPNYTGLTIVRSYSP 402 (532)
Q Consensus 371 ~~Ay~~al~T~~~wi~~~~~~~~~vFfRT~SP 402 (532)
.+.|+..++++++.+.+. .++..+++-++.|
T Consensus 59 ~~~~~~~~~~~i~~i~~~-~p~~~ii~~~~~p 89 (157)
T cd01833 59 PDTAPDRLRALIDQMRAA-NPDVKIIVATLIP 89 (157)
T ss_pred HHHHHHHHHHHHHHHHHh-CCCeEEEEEeCCC
Confidence 467888888888877654 2234566666554
No 32
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=23.45 E-value=49 Score=29.09 Aligned_cols=17 Identities=47% Similarity=0.663 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhccCCC
Q 009529 30 LAMFLVFASLLLVSSPI 46 (532)
Q Consensus 30 ~~~~~~~~~~~~~~~~~ 46 (532)
|.|.|++|++||+||-.
T Consensus 7 llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 7 LLLGLLLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 34444555666666543
No 33
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.89 E-value=40 Score=32.14 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHhCC----CCcceEEEEEecC
Q 009529 371 VDAFGISVETIMTAIATHP----NYTGLTIVRSYSP 402 (532)
Q Consensus 371 ~~Ay~~al~T~~~wi~~~~----~~~~~vFfRT~SP 402 (532)
.+.|+..++.+++.+.+.. .+...+++-+..|
T Consensus 100 ~~~~~~~l~~lv~~i~~~~~~~~~~~~~iil~~pp~ 135 (208)
T cd01839 100 AAEIAQGLGALVDIIRTAPIEPGMPAPKILIVAPPP 135 (208)
T ss_pred HHHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCc
Confidence 4678888888888776642 1233455555444
No 34
>PF12026 DUF3513: Domain of unknown function (DUF3513); InterPro: IPR021901 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 192 to 218 amino acids in length. This domain is found associated with PF00018 from PFAM, PF08824 from PFAM. This domain has a conserved QPP sequence motif. ; PDB: 3T6G_D 1X27_N.
Probab=22.53 E-value=8.6 Score=38.50 Aligned_cols=18 Identities=33% Similarity=0.781 Sum_probs=15.4
Q ss_pred HHcCCcEEEEechhhHHH
Q 009529 236 LMRGKTLAFIGDSVARNQ 253 (532)
Q Consensus 236 ~LRgKrl~FVGDSL~Rnq 253 (532)
.|-+.+|+||||+|.|+-
T Consensus 131 Il~ahkLVfiGDTl~r~~ 148 (210)
T PF12026_consen 131 ILSAHKLVFIGDTLCREA 148 (210)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred EEEeeeeeeeccHHHHHh
Confidence 578999999999999864
No 35
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=21.87 E-value=42 Score=31.07 Aligned_cols=29 Identities=10% Similarity=0.137 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHHhCCCCcceEEEEEecC
Q 009529 371 VDAFGISVETIMTAIATHPNYTGLTIVRSYSP 402 (532)
Q Consensus 371 ~~Ay~~al~T~~~wi~~~~~~~~~vFfRT~SP 402 (532)
.+.|...++..++.+.+. ...+++.+..|
T Consensus 78 ~~~~~~~~~~li~~~~~~---~~~~il~~~~p 106 (183)
T cd04501 78 LEMIKDNIRSMVELAEAN---GIKVILASPLP 106 (183)
T ss_pred HHHHHHHHHHHHHHHHHC---CCcEEEEeCCC
Confidence 467888888888877653 22456666555
No 36
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=21.21 E-value=5.3e+02 Score=23.57 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=10.4
Q ss_pred cEEEEechhhHH
Q 009529 241 TLAFIGDSVARN 252 (532)
Q Consensus 241 rl~FVGDSL~Rn 252 (532)
||+|+|||++..
T Consensus 1 ~i~~~GDSit~G 12 (185)
T cd01832 1 RYVALGDSITEG 12 (185)
T ss_pred CeeEecchhhcc
Confidence 699999999964
Done!